Citrus Sinensis ID: 002736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880------
Protein Sequence
MNPRLLRGERFGVRGDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV
Secondary Structure (PSIPRED)
ccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEccccccEEEEcccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEccccccEEEEEcccccccccccccccccccccccccccccccEEEEEEccccccEEEEEcccEEEEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEcccccEEEEEccccccccccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccccEEEcccccccccccEEEcccccEEEEEEEccccccEEEEEcccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccccccccEccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEcccccEEEEEccccccccccccHccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccEccccccccccccccccHHHHHHccccccHHHHHHHHHHHcccHHHHcccccccHHHHHHHHEEEEEHccccccHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccEEcccHHHHHHHccHHHEEEcccccccccccccccccccEEccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEcccccEccccccEEEEEEcccccEEEEEccccEEEEEEEEccccccccccEEEEEEccccEEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEEcccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEEccccccEEEEEcccccEEEEEEc
Coil and Loop (DISEMBL)
mnprllrgerfgvrgddsndfelrkhsdgvelthgdhlrnqgglsgvceneaaidpfvhaieWGDVSlrqwldkpkrsvdVYECLHIFRQIVEIVYAAHSQGIvvhnvrpscfvmssfnhvsfiesascsdsgsdsheeglntqnmetkdlssplpldMLQRRTRLRRedlqlvtaptndlseascmqsssaygTHVVLVEGMqehkildnrvnveqveekkqpfpmkQILLMEtnwyaspeelagapvscasdiYRLGVLLFELfcpfstgeektrtmsslrhrvlppqlllkfpkeASFCLWllhpepsgrpkmgELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKkgglgsfaelanddlsglnipslniidndcsatmgsrkrfrpelqlHHLEecddnlddnqkhnltgneerslFKSSRLMKNFKKLESAYFltrcrpvkpsgrplvrhsqlssdgrtskplvnerssinnlgskegysegrrsgwinpFLEGLCKYLSFSKLRVkadlnqgdllnssnlvcslsfdrDGELFAAAGVNKKIKVFECDAiinenrdihypVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHErrvwsidfssadptllasgsddgsvKLWSINQAILLLHLGVSIGTIKTKANVccvqfpldsgrslafgsadhriyyydlrnskiplctlighnktvSYVKFVDattlvsastdntlkLWDLsmctsrvidtplhsftghtnvknfvgLSVWDGyvatgsetnevfvyhkafpmpalsfnfnhadplsgpetddAAQFISSVcwrgqssntLVAANSSGNIKILEMV
Flexible Loop (DISEMBL)
mnprllrgerfgvrgddsndfelRKHSdgvelthgdHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTqnmetkdlssplpLDMLQRRTRLRREDLQlvtaptndlseasCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNltgneerslfkssRLMKNFKKLESAYFltrcrpvkpsgrplvrhsqlssdgrtskplvnerssinnlgskegysegrrsGWINPFLEGLCKYLSFSKLRVKADlnqgdllnssNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMreherrvwsidfssaDPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSsntlvaanssgnikilemv
Low Complexity Region (SEG)
MNPRLLRGERFGVRGDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIEsascsdsgsdsHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIelreqideeellleflllVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDllnssnlvcslsFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV
Disordered region (IsUnstruct)
***************************************NQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIE******************************************************************AYGTHVVLVEGMQEHKILDNRVNVE********FPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTG*********LRHRVLPPQLLLKFPKEASFCLWLLH**************************************DEEELLLEFLLLVQQRK***AKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSA*************************************************FKKLESAYFLTRCR**********************************************SGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHA**********AAQFISSVCWRGQ********************
Disordered Region (DISOPRED)
****************************************************************DVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFI*************************************************************************VLVE***********************************WYA**EEL****VSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLL***************SEFLNEPRD****************EEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGL*****************************MG***RF*****************************RSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLV**SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV
Disordered Region (DISEMBL)
MNPRLLRGERFGVRGDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIES***************NTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFST**********LRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPS******************PLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV
Disordered Region (DISPRO)
************************************************************I*W*DVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESA*********************************************************************************************KKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFA***********************************************************EERSLFKSSRLMKNFKKLESAYFLTR****************LSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPRLLRGERFGVRGDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	886	2.2.26 [Sep-21-2011]
Q9LJR3	845	Protein SPA1-RELATED 3 OS	yes	no	0.878	0.920	0.657	0.0
Q94BM7	794	Protein SPA1-RELATED 4 OS	no	no	0.855	0.954	0.618	0.0
Q9SYX2	1029	Protein SUPPRESSOR OF PHY	no	no	0.831	0.716	0.408	1e-160
Q9T014	1036	Protein SPA1-RELATED 2 OS	no	no	0.450	0.385	0.505	1e-115
P93471	672	E3 ubiquitin-protein liga	N/A	no	0.565	0.745	0.385	7e-98
P43254	675	E3 ubiquitin-protein liga	no	no	0.574	0.754	0.375	5e-95
Q8NHY2	731	E3 ubiquitin-protein liga	yes	no	0.546	0.662	0.365	4e-86
Q9R1A8	733	E3 ubiquitin-protein liga	yes	no	0.546	0.660	0.363	1e-85
Q9LTJ6	385	WD repeat-containing prot	no	no	0.338	0.779	0.365	9e-47
Q9FFA7	368	WD repeat-containing prot	no	no	0.341	0.823	0.358	4e-43

>sp|Q9LJR3|SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/846 (65%), Positives = 671/846 (79%), Gaps = 68/846 (8%)

Query: 49  ENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV 108
           ++   IDPFV ++EWGDVSLRQWLDKP+RSVDV+ECLH+FRQIVEIV AAHSQGIVVHNV
Sbjct: 59  DDSLGIDPFVRSLEWGDVSLRQWLDKPERSVDVFECLHVFRQIVEIVNAAHSQGIVVHNV 118

Query: 109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRR 168
           RPSCFVMSSFNHVSFIESASCSDSGSDS E+G  +Q    K++ S             RR
Sbjct: 119 RPSCFVMSSFNHVSFIESASCSDSGSDSLEDGPISQ----KEIGSS------------RR 162

Query: 169 EDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMK 228
           E+          +S+A  ++    Y            +K+L+ ++   + EEK QPFPMK
Sbjct: 163 EEA---------VSKAIAIEEKGVY------------NKLLERKIEKLE-EEKTQPFPMK 200

Query: 229 QILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLP 288
            IL MET+WY SPEE  G+  +CASD+YRLGVLLFELFCP  + EEK+RTMSSLRHRVLP
Sbjct: 201 HILAMETSWYTSPEEDFGSSSTCASDVYRLGVLLFELFCPVPSREEKSRTMSSLRHRVLP 260

Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEE 348
           PQ+LLK PKEASFCLWLLHPEP+ RP M +LLQSEF+ EPRD++EEREAAIELR++I+E+
Sbjct: 261 PQILLKCPKEASFCLWLLHPEPTCRPSMSDLLQSEFITEPRDNLEEREAAIELRDRIEEQ 320

Query: 349 ELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDD-- 406
           E LLEFLLL+QQRKQESA +LQD VS + SDIE+V K+Q IL+K+G   S ++ + DD  
Sbjct: 321 ESLLEFLLLIQQRKQESAYRLQDTVSLLSSDIEQVVKRQLILKKRGS--SLSDFSKDDHQ 378

Query: 407 -LSGLNIPSLNIIDNDCSATMGSRKRFRPE-LQLHHLEECDDNLDDNQKHNLTGNEERSL 464
             SG  + S    + + SA + SRKR R   L L +  E D+            ++  +L
Sbjct: 379 YTSGQPLMSFQA-NEEPSAFLASRKRVRQGILALENGVEVDEE-----------SQGSTL 426

Query: 465 FKSSRLMKNFKKLESAYFLTRCRPVKP--SGRPLVRHSQLSSDGRTSKPLVNERSSINNL 522
            +SSRLM+NFKKLES YFLTR R +K   SG+ L RHS LSS+      +V+E+SS++N 
Sbjct: 427 LESSRLMRNFKKLESVYFLTRRRQMKAAASGKSLTRHSPLSSENGRGSMIVSEKSSVSNP 486

Query: 523 GSKEGY--SEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDG 580
            + + +  ++ R+ GWI+PFLEGLC+YLSFS+LRVKADL QGDLLNSSNLVC+L+FDR+G
Sbjct: 487 VAPKAFFNNDSRQGGWIDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDREG 546

Query: 581 ELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEG 640
           ELFA AGVNKKIK+FEC++I+N+NRDIHYPVVE+A RSKLSS+CWNSYIKSQIASSNF+G
Sbjct: 547 ELFATAGVNKKIKIFECNSIVNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASSNFDG 606

Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLG 700
           VVQ+WDV+RSQ++TEM+EH++RVWSID SSADPTLLASGSDDG+VKLWSINQ       G
Sbjct: 607 VVQIWDVARSQLVTEMKEHKKRVWSIDISSADPTLLASGSDDGTVKLWSINQ-------G 659

Query: 701 VSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVK 760
           VSIGTIKTKANVCCVQFP DSGRSLAFGSADH++YYYDLRN KIPLCT+IGH+KTVSYVK
Sbjct: 660 VSIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVK 719

Query: 761 FVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSE 820
           FVD++TLVS+STDNTLKLWDLSM  S + ++PLHSFTGHTN+KNFVGLSV DGY+ATGSE
Sbjct: 720 FVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSE 779

Query: 821 TNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNI 880
           TNEVFVYHKAFPMP +S+ FN+ D +SG E DDA+QFISS+CWRGQSS TLVAANS+GNI
Sbjct: 780 TNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSS-TLVAANSNGNI 838

Query: 881 KILEMV 886
           KILEM+
Sbjct: 839 KILEMM 844

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94BM7|SPA4_ARATH Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/874 (61%), Positives = 644/874 (73%), Gaps = 116/874 (13%)

Query: 27  SDGVE-LTHGDHLR---------NQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPK 76
           +DG + L+H D++R         N GGL          D  V A+E  DVSLRQWLD P 
Sbjct: 23  TDGSKSLSHIDYVRSLLGSHKEANLGGLDD--------DSIVRALECEDVSLRQWLDNPD 74

Query: 77  RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDS 136
           RSVD +EC H+FRQIVEIV AAHSQGIVVHNVRPSCFVMSSFN+VSFIESASCSDSGS  
Sbjct: 75  RSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNNVSFIESASCSDSGS-- 132

Query: 137 HEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTH 196
            +E   T++ E                                                 
Sbjct: 133 -DEDATTKSRE------------------------------------------------- 142

Query: 197 VVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIY 256
              +   ++ +IL  R + +Q E KKQPFPMKQIL ME +WY S EE  G+  +CASDIY
Sbjct: 143 ---IGSSRQEEILSERRSKQQEEVKKQPFPMKQILAMEMSWYTSHEEDNGSLCNCASDIY 199

Query: 257 RLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM 316
           RLGVLLFELFCP S+ EEK+RTMSSLRHRVLPPQ+LL +PKEASFCLWLLHPEPS RP M
Sbjct: 200 RLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQILLNWPKEASFCLWLLHPEPSCRPSM 259

Query: 317 GELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFI 376
            ELLQSEF+NEPR+++EEREAA+ELR++I+E+ELLLEFL L+QQRKQE+A KLQD +S +
Sbjct: 260 SELLQSEFINEPRENLEEREAAMELRDRIEEQELLLEFLFLIQQRKQEAADKLQDTISLL 319

Query: 377 CSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPEL 436
            SDI++V K+Q +L++KG                          D  + + SRKR R   
Sbjct: 320 SSDIDQVVKRQLVLQQKG-------------------------RDVRSFLASRKRIRQGA 354

Query: 437 QLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSG--- 493
           +    EE +D+   +++  L    E +L +SSRLM+N KKLES YF TR R +K +    
Sbjct: 355 ETTAAEEENDDNSIDEESKLDDTLESTLLESSRLMRNLKKLESVYFATRYRQIKAATAAE 414

Query: 494 RPLVRH-SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSK 552
           +PL R+ S LS +GR+S     E+SS++   SK+  ++ R+ GWI+PFLEGLCKYLSFSK
Sbjct: 415 KPLARYYSALSCNGRSS-----EKSSMSQ-PSKDPINDSRQGGWIDPFLEGLCKYLSFSK 468

Query: 553 LRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV 612
           LRVKADL QGDLLNSSNLVC++ FDRDGE FA AGVNKKIK+FEC++II + RDIHYPVV
Sbjct: 469 LRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV 528

Query: 613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSAD 672
           E+ASRSKLS ICWNSYIKSQ+ASSNFEGVVQVWDV+R+Q++TEM+EHE+RVWSID+SSAD
Sbjct: 529 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSAD 588

Query: 673 PTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADH 732
           PTLLASGSDDGSVKLWSINQ       GVSIGTIKTKAN+CCVQFP ++GRSLAFGSADH
Sbjct: 589 PTLLASGSDDGSVKLWSINQ-------GVSIGTIKTKANICCVQFPSETGRSLAFGSADH 641

Query: 733 RIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTP 792
           ++YYYDLRN K+PLCT+IGH+KTVSYV+FVD++TLVS+STDNTLKLWDLSM  S + +TP
Sbjct: 642 KVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETP 701

Query: 793 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETD 852
           LHSF GHTNVKNFVGLSV DGY+ATGSETNEVFVYHKAFPMP LS+ F   DP+S  E D
Sbjct: 702 LHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVD 761

Query: 853 DAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
           DA+QFISSVCWRGQSS TLVAANS+GNIKILEMV
Sbjct: 762 DASQFISSVCWRGQSS-TLVAANSTGNIKILEMV 794

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYX2|SPA1_ARATH Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1

 Score =  565 bits (1455), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 343/839 (40%), Positives = 487/839 (58%), Gaps = 102/839 (12%)

Query: 66   VSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIE 125
            +SLR++L       +    L +FRQ+VE+V +AHS+ + + ++RPS F +     + +I 
Sbjct: 275  ISLREFLRSSYAKREKRHGLCLFRQLVELVDSAHSKRLFLLDLRPSLFTLVPSKKLRYIG 334

Query: 126  SASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS 185
            +   +D  SD  E+ LN +    ++ SS        R ++ R+ DL L  +P N L   S
Sbjct: 335  NFGKNDLESDVDED-LNRRRPVVEESSSG------GRDSKKRKMDLHL-NSPGNQLQATS 386

Query: 186  C----MQSSSAYGTHVVLVEG-----MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETN 236
                  + S     ++V         +Q+   + N ++V  V  K+          +E  
Sbjct: 387  TGRPFKRKSPVIDLNMVDARNPDSCELQQQDYIKN-LSVSSVSRKQS-----MSTWLEEQ 440

Query: 237  WYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFP 296
            WY  PEE+ G  +   S+IY LGVLLFEL C   +GE     M+ LRHR+LPP  L K+P
Sbjct: 441  WYTCPEEINGEDIGEKSNIYALGVLLFELLCHCESGEMHAAMMADLRHRILPPTFLSKYP 500

Query: 297  KEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLL 356
            KEA FCLWLLHPEPS RP   ++L+SE + E  DS++   AA E+       ELLL FL 
Sbjct: 501  KEAGFCLWLLHPEPSSRPSARDILKSELICED-DSVKSTAAAEEI------SELLLHFLS 553

Query: 357  LVQ-QRKQESAKKLQDIVSFICSDIEEVSKQQA----ILRKKGGLGSFAELANDDLSGLN 411
             ++ Q+K++++K LQDI + +  DI+E  ++ +    ++R  G +    + +        
Sbjct: 554  SLEVQKKKKASKLLQDIQT-LEDDIKEAERRYSSNVSLVRSHGAIEKRVQSSP------- 605

Query: 412  IPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLM 471
                  +D  C+    S   F P                      T N +R       LM
Sbjct: 606  ------LDEHCTT---SSALFVP----------------------TANTDR-------LM 627

Query: 472  KNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVN-ERSSINNLGSKEGYSE 530
             N ++LE AYF  R +         +  S  ++  R+ K L + +R S N   +++  ++
Sbjct: 628  SNIRQLEDAYFFMRSQ---------INLSSSAATARSDKTLKDRDRCSENQNENQDMSTK 678

Query: 531  GRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNK 590
            G+ S  +  F EGLCK+  +SK      +  GDLLNS+++VCSLSFD D E  AAAG++K
Sbjct: 679  GKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISK 738

Query: 591  KIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRS 650
            KIK+F+ +A +NE+  +HYP+VEM ++SKLS +CWNSYIK+ +AS++++GVVQ+WD    
Sbjct: 739  KIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTG 798

Query: 651  QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKA 710
            Q  ++  EH++R WS+DFS +DPT   SGSDD SVKLWSIN+         S+GTI + A
Sbjct: 799  QGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSINEK-------RSLGTIWSPA 851

Query: 711  NVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSA 770
            NVCCVQF   S   LAFGSAD+++Y YDLR  K P CTL GH K VSYVKF+D+ T+VSA
Sbjct: 852  NVCCVQFSSYSNHLLAFGSADYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSETIVSA 911

Query: 771  STDNTLKLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
            STDN+LKLW+L+   S  +     S T  GHTN KNFVGLSV DGY+A GSETNEV+ Y+
Sbjct: 912  STDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYY 971

Query: 829  KAFPMPALSFNFNHADPLSGPET-DDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
            K+ PMP  S+ F   DP+SG E  DD  QF+SSVCWR + SN LVAANS+GN+K+L++V
Sbjct: 972  KSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCWR-KKSNMLVAANSTGNMKLLKLV 1029

Controls normal photoperiodic flowering and regulates circadian rhythms. Required for suppression of photomorphogenesis in dark-grown seedlings and for normal elongation growth of adult plants. Integral component of the COP1/SPA E3 ubiquitin-protein ligase complex. Involved in HY5, HFR1, LAF1 and CO degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q9T014|SPA2_ARATH Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/421 (50%), Positives = 282/421 (66%), Gaps = 22/421 (5%)

Query: 469  RLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGY 528
            RL++N  +LESAYF  R     P  R  +R  +          L N  +++  + + E +
Sbjct: 635  RLIRNINQLESAYFAARIDAHLPEARYRLRPDR--------DLLRNSDNTVAEVENSETW 686

Query: 529  SEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGV 588
            S   R G    F +GLCKY  +SK   +  L   +L N+SN++CSL FDRD + FA AGV
Sbjct: 687  SSDDRVG---AFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGV 743

Query: 589  NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
            +KKIK++E +++ NE+ DIHYP +EM +RSKLS +CWN+YI++ +ASS+++G+V++WDV+
Sbjct: 744  SKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVT 803

Query: 649  RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
              Q ++   EHE+R WS+DFS A PT LASGSDD SVKLW+IN+   L       GTI+ 
Sbjct: 804  TGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCL-------GTIRN 856

Query: 709  KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
             ANVCCVQF   S   LAFGS+D R Y YDLRN + P C L GHNK VSY KF+D  TLV
Sbjct: 857  IANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLV 916

Query: 769  SASTDNTLKLWDLSMCTSRVIDTPLHS--FTGHTNVKNFVGLSVWDGYVATGSETNEVFV 826
            +ASTDNTLKLWDL   T   + T   S  F GHTN KNFVGLS  DGY+A GSETNEV+ 
Sbjct: 917  TASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYA 976

Query: 827  YHKAFPMPALSFNFNHADPLSGPET-DDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 885
            YH++ PMP  S+ F   DP+SG E  +D   F+SSVCWR + SN +V+A+S+G+IK+L++
Sbjct: 977  YHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWR-KRSNMVVSASSNGSIKVLQL 1035

Query: 886  V 886
            V
Sbjct: 1036 V 1036

Involved in suppression of photomorphogenesis in dark-grown seedlings. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1

 Score =  359 bits (921), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 220/570 (38%), Positives = 312/570 (54%), Gaps = 69/570 (12%)

Query: 332 MEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQA--- 388
           ME+ EA   +       ++LL+FL  ++++K +  K++Q  + FI  DI  V K +    
Sbjct: 150 MEQEEAERNM-------QILLDFLHCLRKQKVDELKEVQTDLQFIKEDIGAVEKHRMDLY 202

Query: 389 -----------ILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQ 437
                      +L   GG  S     + + SGL    LN+     S +   +   + ++ 
Sbjct: 203 RARDRYSVKLRMLDDSGGRKSRHSSMDLNSSGLASSPLNLRGGLSSGSHTKKNDGKSQIS 262

Query: 438 LH-HLEECDDNL--DDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPV-KPSG 493
            H H  +  D +   D+Q  N +G    +L +  R+   F  L+  Y   R +   KP G
Sbjct: 263 SHGHGIQRRDPITGSDSQYINQSG---LALVRKKRVHTQFNDLQECYLQKRRQAADKPHG 319

Query: 494 RPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKL 553
           +                    ER +  N  S+EGYS G     ++ F   L  +  +S+L
Sbjct: 320 Q-------------------QERDT--NFISREGYSCG-----LDDFQSVLTTFTRYSRL 353

Query: 554 RVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE 613
           RV A++  GD+ +S+N+V S+ FDRD +LFA AGV+++IKVF+  A++NE  D H PVVE
Sbjct: 354 RVIAEIRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCPVVE 413

Query: 614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADP 673
           M +RSKLS + WN Y K+QIASS++EG+V VW ++  + L E  EHE+R WS+DFS  DP
Sbjct: 414 MTTRSKLSCLSWNKYAKNQIASSDYEGIVTVWTMTTRKSLMEYEEHEKRAWSVDFSRTDP 473

Query: 674 TLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
           ++L SGSDD  VK+W  NQ         S+  I  KAN+CCV++   SG  +A GSADH 
Sbjct: 474 SMLVSGSDDCKVKVWCTNQE-------ASVLNIDMKANICCVKYNPGSGNYIAVGSADHH 526

Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPL 793
           I+YYDLRN   P+    GH K VSYVKF+    L SASTD+TL+LWD+        + P+
Sbjct: 527 IHYYDLRNISRPVHVFTGHKKAVSYVKFLSNDELASASTDSTLRLWDVKQ------NLPV 580

Query: 794 HSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDD 853
            +F GH N KNFVGL+V   Y+A GSETNEVFVYHK    P     F   D +   E + 
Sbjct: 581 RTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLD-MEDAEDEA 639

Query: 854 AAQFISSVCWRGQSSNTLVAANSSGNIKIL 883
            + FIS+VCW+     T++ ANS G IK+L
Sbjct: 640 GSYFISAVCWKSDRP-TILTANSQGTIKVL 668

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Pisum sativum (taxid: 3888)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2

 Score =  349 bits (896), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 316/567 (55%), Gaps = 58/567 (10%)

Query: 332 MEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQA-IL 390
           + ER+  +E  E     ++LL+FL  ++++K +   ++Q  + +I  DI  V + +  + 
Sbjct: 148 LAERKRKMEQEEAERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLY 207

Query: 391 RKKGGLGSFAELANDDLS------------GLNIPSLNIIDNDCSATMGSRK-RFRPELQ 437
           R +        +  DD S            G N  SL+I   +      ++K   + +  
Sbjct: 208 RARDRYSVKLRMLGDDPSTRNAWPHEKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGS 267

Query: 438 LHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYF-LTRCRPVKPSGRPL 496
            H L          +K  L+G++ +SL +S+  M   K++ + +  L  C         L
Sbjct: 268 SHGLP---------KKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECY--------L 310

Query: 497 VRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVK 556
            +  QL+    + +   N++S +     +EGYS G     +  F   L  +  +S+LRV 
Sbjct: 311 QKRRQLADQPNSKQE--NDKSVVR----REGYSNG-----LADFQSVLTTFTRYSRLRVI 359

Query: 557 ADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS 616
           A++  GD+ +S+N+V S+ FDRD ELFA AGV++ IKVF+  +++NE  D+  P+VEM++
Sbjct: 360 AEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMST 419

Query: 617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLL 676
           RSKLS + WN + K+ IASS++EG+V VWDV+  Q L E  EHE+R WS+DFS  +P++L
Sbjct: 420 RSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSML 479

Query: 677 ASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYY 736
            SGSDD  VK+W   Q         S+  I  KAN+CCV++   S   +A GSADH I+Y
Sbjct: 480 VSGSDDCKVKVWCTRQE-------ASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHY 532

Query: 737 YDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF 796
           YDLRN   PL    GH K VSYVKF+    L SASTD+TL+LWD+        + P+ +F
Sbjct: 533 YDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVK------DNLPVRTF 586

Query: 797 TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQ 856
            GHTN KNFVGL+V   Y+A GSETNEV+VYHK    P  S  F   D +   E +  + 
Sbjct: 587 RGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPD-MDDAEEEAGSY 645

Query: 857 FISSVCWRGQSSNTLVAANSSGNIKIL 883
           FIS+VCW+  S  T++ ANS G IK+L
Sbjct: 646 FISAVCWKSDSP-TMLTANSQGTIKVL 671

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors such as HY5, HYH and LAF1. Down-regulates MYB21, probably via ubiquitination process. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1

 Score =  320 bits (819), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 210/575 (36%), Positives = 295/575 (51%), Gaps = 91/575 (15%)

Query: 320 LQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSD 379
           L  E L + +  +E    A +L       ++L+EFL + ++ K+E  +++Q  +S +  D
Sbjct: 240 LMLELLVQKKKQLEAESHAAQL-------QILMEFLKVARRNKREQLEQIQKELSVLEED 292

Query: 380 IEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLH 439
           I+ V +           G ++ ++ D      +P         S+ + S +  +P     
Sbjct: 293 IKRVEEMS---------GLYSPVSEDS----TVPQFEAPSPSHSSIIDSTEYSQPPGF-- 337

Query: 440 HLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRH 499
                         +N T    R      RL  +F+ LE  YF TR              
Sbjct: 338 ---SGSSQTKKQPWYNSTLASRRK-----RLTAHFEDLEQCYFSTR-------------M 376

Query: 500 SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADL 559
           S++S D RT+  L                         + F E L K+  ++ +R  A L
Sbjct: 377 SRISDDSRTASQL-------------------------DEFQECLSKFTRYNSVRPLATL 411

Query: 560 NQG-DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRS 618
           +   DL N S++V S+ FDRD + FA AGV KKIKV+E D +I +  DIHYP  EM   S
Sbjct: 412 SYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNS 471

Query: 619 KLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLAS 678
           K+S I W+SY K+ +ASS++EG V +WD    Q     +EHE+R WS+DF+  DP LLAS
Sbjct: 472 KISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLAS 531

Query: 679 GSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD 738
           GSDD  VKLWS N       L  S+ +I+ KANVCCV+F   S   LAFG ADH ++YYD
Sbjct: 532 GSDDAKVKLWSTN-------LDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYD 584

Query: 739 LRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLS--MCTSRVIDTPLHSF 796
           LRN+K P+    GH K VSY KFV    +VSASTD+ LKLW++    C        L SF
Sbjct: 585 LRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYC--------LRSF 636

Query: 797 TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL--SGPETDDA 854
            GH N KNFVGL+    Y+A GSE N +++Y+K      L+F F+    +     + DD 
Sbjct: 637 KGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDT 696

Query: 855 AQFISSVCWRG---QSSNTLVAANSSGNIKILEMV 886
            +F+S+VCWR      SN L+AANS G IK+LE+V
Sbjct: 697 NEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV 731

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2

 Score =  318 bits (816), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 296/575 (51%), Gaps = 91/575 (15%)

Query: 320 LQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSD 379
           L  E L + +  +E    A +L       ++L+EFL + ++ K+E  +++Q  +S +  D
Sbjct: 242 LMLELLVQKKKQLEAESHAAQL-------QILMEFLKVARRNKREQLEQIQKELSVLEED 294

Query: 380 IEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLH 439
           I+ V +           G ++ ++ D      +P         S+ + S +  +P     
Sbjct: 295 IKRVEEMS---------GLYSPVSEDS----TVPQFEAPSPSHSSIIDSTEYSQPP---- 337

Query: 440 HLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRH 499
                       +K     +   S  +  RL  +F+ LE  YF TR              
Sbjct: 338 ----GFSGTSQTKKQPWYNSTLAS--RRKRLTAHFEDLEQCYFSTR-------------M 378

Query: 500 SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADL 559
           S++S D RT+  L                         + F E L K+  ++ +R  A L
Sbjct: 379 SRISDDSRTASQL-------------------------DEFQECLSKFTRYNSVRPLATL 413

Query: 560 NQG-DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRS 618
           +   DL N S++V S+ FDRD + FA AGV KKIKV+E   +I +  DIHYP  EM   S
Sbjct: 414 SYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNS 473

Query: 619 KLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLAS 678
           K+S I W+SY K+ +ASS++EG V +WD    Q     +EHE+R WS+DF+  DP LLAS
Sbjct: 474 KISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLAS 533

Query: 679 GSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD 738
           GSDD  VKLWS N       L  S+ +I+ KANVCCV+F   S   LAFG ADH ++YYD
Sbjct: 534 GSDDAKVKLWSTN-------LDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYD 586

Query: 739 LRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLS--MCTSRVIDTPLHSF 796
           LRN+K P+    GH K VSY KFV    +VSASTD+ LKLW++    C        L SF
Sbjct: 587 LRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYC--------LRSF 638

Query: 797 TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL--SGPETDDA 854
            GH N KNFVGL+    Y+A GSE N +++Y+K      L+F F+    +     + DD 
Sbjct: 639 KGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDT 698

Query: 855 AQFISSVCWRGQS---SNTLVAANSSGNIKILEMV 886
            +F+S+VCWR  S   SN L+AANS G IK+LE+V
Sbjct: 699 NEFVSAVCWRALSDGESNVLIAANSQGTIKVLELV 733

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LTJ6|RUP1_ARATH WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1

 Score =  189 bits (480), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 181/328 (55%), Gaps = 28/328 (8%)

Query: 567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE--MASRSKLSSIC 624
            S+ + ++ FD  GE+ A  G+ +KI+ +   +++ E+RD H    E  + + +KLSS+ 
Sbjct: 70  GSDAIGAIEFDPTGEIIATGGIARKIRSYRLSSLL-ESRDDHVTASESYICTPAKLSSLK 128

Query: 625 WNSYIKSQ-IASSNFEGVVQVWDVSRSQVLTEMREHE-RRVWSIDFSSADPTLL-ASGSD 681
           W      + I S +++GVV  +DV +   ++E  EH  RR+WS+D++  + +L+ ASGSD
Sbjct: 129 WRPDFSGRVIGSGDYDGVVTEYDVEKQVPVSERDEHGGRRIWSVDYTLYNGSLIGASGSD 188

Query: 682 DGSVKLWSINQAILLLHLGVSIGTIK--TKANVCCVQFPLDSGRSLAFGSADHRIYYYDL 739
           DG+V++W       L        T++    A +C V+F    G S+A G AD   Y YD+
Sbjct: 189 DGTVQMWDPRNGGTLEE------TVRPGGGAAICSVEFDPFGGSSIAVGCADRNAYVYDI 242

Query: 740 RNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH 799
           R    PL  L GH KTV+Y +F+D+ T+V+ STD +LK WD+     RV+ T    + GH
Sbjct: 243 RRLVDPLIVLDGHTKTVTYARFMDSHTIVTGSTDGSLKQWDIDN-GRRVVRT----YRGH 297

Query: 800 TNVKNFVGLSVW--DGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQF 857
            N +NFVGLSVW   G V +GSE N+VFVY K +  P       H +           +F
Sbjct: 298 VNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRFGSDR-----RF 352

Query: 858 ISSVCWRGQSSN--TLVAANSSGNIKIL 883
           +SSVC R    +  TLVA  S G ++I 
Sbjct: 353 VSSVCLRQVDEDWCTLVAGGSDGALEIF 380

Functions in association with RUP2 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFA7|RUP2_ARATH WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1

 Score =  177 bits (448), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 177/332 (53%), Gaps = 29/332 (8%)

Query: 569 NLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINEN--RDIHYPVVEMASR--------S 618
           +++ ++ FD    + A AG+++KI+ +   +++  N         V+ A+         +
Sbjct: 41  DVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAVSGTGVSFVDQATACEYYICTPA 100

Query: 619 KLSSICWNSYIKSQ-IASSNFEGVVQVWDVSRSQVLTEMREHE-RRVWSIDFS--SADPT 674
           KLSS+ W      + I S +++GVV  +D+ +   + E  EH  RRVWS+D++      T
Sbjct: 101 KLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTPVFERDEHGGRRVWSVDYTRHGGAST 160

Query: 675 LLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRI 734
           + ASGSDDG++++W   +      +GV       ++ VCCV+F    G ++A G AD + 
Sbjct: 161 VGASGSDDGTMQVWD-PRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKG 219

Query: 735 YYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLH 794
           Y YD+R    P  TL GH KTVSYV+F+D  T+V+A TD  LKLW  S+   RVI T   
Sbjct: 220 YVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGTDGCLKLW--SVEDGRVIRT--- 274

Query: 795 SFTGHTNVKNFVGLSVW--DGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETD 852
            + GH N +NFVGLSVW        GSE N VFVY + +  P     F      SG +  
Sbjct: 275 -YEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVDGFEPVGMNSGSDK- 332

Query: 853 DAAQFISSVCWR--GQSSNTLVAANSSGNIKI 882
              +F+SSVCWR  G    TLVA  S G +++
Sbjct: 333 ---RFVSSVCWRQSGVDQCTLVAGGSDGVLQV 361

Functions in association with RUP1 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development. May act as negative regulator of photoperiodic flowering by suppressing flowering through the action of CONSTANS (CO) and FLOWERING LOCUS T (FT).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	886
255585740	889	ubiquitin ligase protein cop1, putative	0.970	0.967	0.744	0.0
359493656	903	PREDICTED: protein SPA1-RELATED 3-like [	0.979	0.961	0.715	0.0
356542282	892	PREDICTED: protein SPA1-RELATED 3-like [	0.975	0.968	0.703	0.0
356546870	892	PREDICTED: protein SPA1-RELATED 3-like [	0.974	0.967	0.704	0.0
357452949	875	SPA1-like protein [Medicago truncatula]	0.951	0.963	0.690	0.0
224128308	857	predicted protein [Populus trichocarpa]	0.923	0.954	0.724	0.0
224114936	851	predicted protein [Populus trichocarpa]	0.914	0.951	0.711	0.0
449446929	850	PREDICTED: protein SPA1-RELATED 3-like [	0.936	0.976	0.708	0.0
75335085	845	RecName: Full=Protein SPA1-RELATED 3 gi|	0.878	0.920	0.657	0.0
356545455	788	PREDICTED: protein SPA1-RELATED 3-like [	0.887	0.997	0.660	0.0

>gi|255585740|ref|XP_002533551.1| ubiquitin ligase protein cop1, putative [Ricinus communis] gi|223526576|gb|EEF28831.1| ubiquitin ligase protein cop1, putative [Ricinus communis]

 Score = 1310 bits (3391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/873 (74%), Positives = 744/873 (85%), Gaps = 13/873 (1%)

Query: 15  GDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDK 74
           G  S D   RK +D V L H + L+NQ GLSG  ++E A+DPF  AIEWGDVSLRQWLDK
Sbjct: 29  GPLSRDSVFRKKTDRVVLAHHN-LKNQVGLSGGYKDEVAVDPFARAIEWGDVSLRQWLDK 87

Query: 75  PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGS 134
           P+RSVD +ECLHIFRQIV IV  AHSQGIVVHNVRPSCFVM+SFNHVSFIESASCSDSGS
Sbjct: 88  PERSVDEFECLHIFRQIVGIVNLAHSQGIVVHNVRPSCFVMTSFNHVSFIESASCSDSGS 147

Query: 135 DSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG 194
           DS E+GLN++ +E K+ SS LP D+ Q RTRLR ED Q  + P N LSEASC+QSSS + 
Sbjct: 148 DSLEDGLNSRTLEVKNPSSLLPNDIFQLRTRLRSEDFQPASTPINALSEASCIQSSSVHA 207

Query: 195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASD 254
           THV + E  +E K  D  +  ++ EE+KQPFPMKQILLMET+WY SPEE  G+P SCASD
Sbjct: 208 THVPVGENTEEDKANDRTIIEQEEEERKQPFPMKQILLMETSWYTSPEEATGSPSSCASD 267

Query: 255 IYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP 314
           IYRLGVLLFELFCPFS+ E+K+RTMSSLRHRVLPPQLLLK+PKEASFCLWLLHPEPS RP
Sbjct: 268 IYRLGVLLFELFCPFSSREDKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRP 327

Query: 315 KMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVS 374
           KM ELLQSEFLNEPR+++EEREAAI+L E+I+E++LLL+FLLL+QQRKQE+A KLQD VS
Sbjct: 328 KMCELLQSEFLNEPRENLEEREAAIQLSERIEEQDLLLDFLLLIQQRKQEAADKLQDTVS 387

Query: 375 FICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRP 434
            +CSDIEEV K +  L+KKG  GS  E   DD    N+P  +I+DND S+++GSRKRFRP
Sbjct: 388 LLCSDIEEVLKHRTFLKKKG--GSCLERMKDDNLVSNLPPFSIVDNDDSSSLGSRKRFRP 445

Query: 435 ELQLHHLEECDDNLDDNQKHNL-TGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSG 493
            +Q+ ++EE DDN DD Q  ++ T +++  L KSSRLMKNFKKLESAYFLTRCRP++ SG
Sbjct: 446 GIQIFNMEEFDDNRDDAQHSDMVTESQDSLLLKSSRLMKNFKKLESAYFLTRCRPIRSSG 505

Query: 494 RPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKL 553
           +P +R+S +SSDGR S  +V+ERSSINNL  KE + E R+SGWI+PFLEGLCKYLSF+KL
Sbjct: 506 KPFIRYSPISSDGRGST-VVSERSSINNLAPKEQHVESRQSGWISPFLEGLCKYLSFNKL 564

Query: 554 RVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE 613
           ++KADL QGDLLNSSNLVCSLSFDRDGE FA AGVNKKIK+FECDAIINENRDIHYPVVE
Sbjct: 565 KIKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDAIINENRDIHYPVVE 624

Query: 614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADP 673
           +A+RSKLSS+CWNSYIKSQIASSNFEGVVQVWD++RSQVLTEMREHERRVWSIDFSSADP
Sbjct: 625 IATRSKLSSVCWNSYIKSQIASSNFEGVVQVWDITRSQVLTEMREHERRVWSIDFSSADP 684

Query: 674 TLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
           T LASGSDD SVKLW+INQ       GVSIGTI+TKANVC VQFPLDS RSLAFGSADH+
Sbjct: 685 TTLASGSDDCSVKLWNINQ-------GVSIGTIRTKANVCSVQFPLDSSRSLAFGSADHK 737

Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPL 793
           +YYYDLRN+K+PLCTL+GHNKTVSYV+F+D+T LVSASTDNTLKLWDLSMC SR+IDTPL
Sbjct: 738 VYYYDLRNAKVPLCTLVGHNKTVSYVRFIDSTNLVSASTDNTLKLWDLSMCASRIIDTPL 797

Query: 794 HSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDD 853
            SFTGH NVKNFVGLSV DGY+ATGSETNEVF+YHKAFPMPALSF FN+ DPLSG E DD
Sbjct: 798 QSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFNNTDPLSGHEMDD 857

Query: 854 AAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
            AQFISSVCWR QSS TLVAANS+GNIKILEMV
Sbjct: 858 PAQFISSVCWRSQSS-TLVAANSTGNIKILEMV 889

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493656|ref|XP_002282441.2| PREDICTED: protein SPA1-RELATED 3-like [Vitis vinifera]

 Score = 1228 bits (3176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/893 (71%), Positives = 725/893 (81%), Gaps = 25/893 (2%)

Query: 2   NPRLLRGERFGVRGDDSND---FELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFV 58
           NPR     R G+ G  S+D      RK  D V  +H  + +NQ G+S VC+++ A+DPFV
Sbjct: 28  NPRQRHANRIGLSGGASHDSGFISGRKERDHVLSSHTKNHKNQVGISQVCDDDVALDPFV 87

Query: 59  HAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSF 118
            AIEWGDVSLR WLDKP+R VD  ECLHIF QI EIV AAHSQG+VV+NVRPSCFVMSSF
Sbjct: 88  RAIEWGDVSLRHWLDKPERRVDALECLHIFTQIAEIVNAAHSQGVVVNNVRPSCFVMSSF 147

Query: 119 NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT 178
           NHVSFIES SCSDSGSDS E+G N+   E   LSS LP D+  R++R   ED      PT
Sbjct: 148 NHVSFIESVSCSDSGSDSLEDGSNSHTEEDNGLSS-LPDDLHLRKSRSGNEDFLPTIMPT 206

Query: 179 ND----LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLME 234
           N     LSE SCMQSSS   THV LVE  +E+K  D R +VEQ EEKKQ FPMK+ILLME
Sbjct: 207 NASQIVLSETSCMQSSSVSATHVTLVEDREEYKSTDRR-SVEQSEEKKQTFPMKEILLME 265

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
           TNWY SPEE++GA  SCASDIY+LGVLLFELFC FS+ EEK+RTMS LRHRVLPPQLLLK
Sbjct: 266 TNWYTSPEEISGAQTSCASDIYQLGVLLFELFCTFSSREEKSRTMSCLRHRVLPPQLLLK 325

Query: 295 FPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEF 354
           +PKEASFCLWLLHPEPS RPK+ EL QSEFL EPRD MEEREAAIELRE+I+E+ELLLEF
Sbjct: 326 WPKEASFCLWLLHPEPSSRPKISELFQSEFLTEPRDKMEEREAAIELRERIEEQELLLEF 385

Query: 355 LLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPS 414
           LLL+QQRKQ +  KLQD +SF+ SDIEEV KQQA LRK+GG  S+ EL  DD S  ++  
Sbjct: 386 LLLMQQRKQGAVDKLQDTISFLSSDIEEVGKQQATLRKRGG--SYQELVKDDQSTSDLSP 443

Query: 415 LNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTG-NEERSLFKSSRLMKN 473
           +++ +N+ S ++ S KRFR    +HH++E DD L++ QK  +   N E  + KSSRLMKN
Sbjct: 444 MDVDENEDSTSVRSSKRFRQ--GVHHIKELDDTLNNGQKLGMNAENPEILISKSSRLMKN 501

Query: 474 FKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRR 533
           FKKLESAY LTR +P KPSG+P  + S  SS+GR S  +V ERSS+NNL SK+ Y+E  +
Sbjct: 502 FKKLESAYLLTRRKPTKPSGKPSNKISPPSSNGRGS-IVVTERSSVNNLASKDQYNEHGQ 560

Query: 534 SGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIK 593
           SGWINPFL+GLCKYLSFSKL+VKADL QGDLLNSSNLVCS+SFDRDGELFA AGVNKKIK
Sbjct: 561 SGWINPFLDGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSVSFDRDGELFATAGVNKKIK 620

Query: 594 VFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVL 653
           VFEC++I+NE+RDIHYP+VEMA RSKLSSICWNSYIKSQIASSNFEGVVQVWDV+RSQVL
Sbjct: 621 VFECNSILNEDRDIHYPLVEMACRSKLSSICWNSYIKSQIASSNFEGVVQVWDVTRSQVL 680

Query: 654 TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVC 713
           TEMREHERRVWSID+S ADPT+LASGSDDGSVKLWSINQ       GVS+GTIKTKANVC
Sbjct: 681 TEMREHERRVWSIDYSLADPTMLASGSDDGSVKLWSINQ-------GVSVGTIKTKANVC 733

Query: 714 CVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTD 773
           CVQF  DSGR LAFGSADHRIYYYDLRNSKIPLCTL+GHNKTVSYVKFVD+T LVSASTD
Sbjct: 734 CVQFTPDSGRYLAFGSADHRIYYYDLRNSKIPLCTLLGHNKTVSYVKFVDSTHLVSASTD 793

Query: 774 NTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPM 833
           NTLKLWDLSMCT+RV++ PL SFTGH NVKNFVGLSV DGY+ATGSE NEV +YHKAFPM
Sbjct: 794 NTLKLWDLSMCTARVLEGPLQSFTGHQNVKNFVGLSVSDGYIATGSEANEVVIYHKAFPM 853

Query: 834 PALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
           PAL+F FN  D  S  E+DD+AQFISSVCWRGQSS TLVAANS+GNIKILEMV
Sbjct: 854 PALTFKFNSMD--SDHESDDSAQFISSVCWRGQSS-TLVAANSAGNIKILEMV 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542282|ref|XP_003539598.1| PREDICTED: protein SPA1-RELATED 3-like [Glycine max]

 Score = 1221 bits (3158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/887 (70%), Positives = 718/887 (80%), Gaps = 23/887 (2%)

Query: 2   NPRLLRGERFGVRGDDSNDFELRKHSDGVELTHGDHLRN-QGGLSGVCENEAAIDPFVHA 60
           N R+   +R    G+ S D   RK  D V L  G   +N  GG SG+CE+E  +DPF  A
Sbjct: 27  NQRVHCPQRNPFSGEASQDSGFRKERDRVLLAQGGQPKNLGGGFSGLCEDEVEVDPFFCA 86

Query: 61  IEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNH 120
           +EWGD+SLRQWLDKP+RSVD +ECLHIFRQIVEIV  AHSQG+VVHNVRPSCFVMSSFNH
Sbjct: 87  VEWGDISLRQWLDKPERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNH 146

Query: 121 VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRRED-LQLVTAPTN 179
           +SFIESASCSD+GSDS  +G+N Q  E K  +S  P DM Q+   L  ED + + T+ T 
Sbjct: 147 ISFIESASCSDTGSDSLGDGMNNQGGEVKTPTSLCPHDMHQQS--LGSEDFMPIKTSTTP 204

Query: 180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYA 239
             S++SCM SS+ Y     L+E  +E+K+ D R + E+VE KKQ FPMKQILLME +WY 
Sbjct: 205 ARSDSSCMLSSAVYAARASLIEETEENKMKDRRKD-EEVEGKKQSFPMKQILLMEMSWYT 263

Query: 240 SPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEA 299
           SPEE AG   SCASD+YRLGVLLFELFCP S+ EEK+RTMSSLRHRVLPPQLLLK+PKEA
Sbjct: 264 SPEEGAGESSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEA 323

Query: 300 SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQ 359
           SFCLWLLHP+P  RP +GELLQSEFLNE RD  EEREAAIELR++I+++ELLLEFLLL+Q
Sbjct: 324 SFCLWLLHPDPKSRPTLGELLQSEFLNEQRDDTEEREAAIELRQRIEDQELLLEFLLLLQ 383

Query: 360 QRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIID 419
           QRKQE A+KLQ  VSF+CSDIEEV+KQ    ++  G    AEL +D+ S  + PS+  +D
Sbjct: 384 QRKQEVAEKLQHTVSFLCSDIEEVTKQHVRFKEITG----AELGSDERSASSFPSMTFVD 439

Query: 420 NDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLES 479
           ++ SA +G+RKR R  + + ++EECDD++ D+QK N +      L KSSRLMKNFKKLES
Sbjct: 440 SEDSAFLGTRKRVRLGMDVKNIEECDDDVGDDQKSNGS-----FLSKSSRLMKNFKKLES 494

Query: 480 AYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINP 539
           AYFLTRCRP   SG+  VRH  ++SDGR S  +V ERS IN+L SKE   EG  S WINP
Sbjct: 495 AYFLTRCRPAYSSGKLAVRHPPVTSDGRGS-VVVTERSCINDLKSKEQCREGA-SAWINP 552

Query: 540 FLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDA 599
           FLEGLCKYLSFSKL+VKADL QGDLL+SSNLVCSLSFDRDGE FA AGVNKKIKVFECD+
Sbjct: 553 FLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDS 612

Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           IINE+RDIHYPVVEMASRSKLSSICWN+YIKSQIASSNFEGVVQ+WDV+RSQV++EMREH
Sbjct: 613 IINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVISEMREH 672

Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           ERRVWSIDFSSADPT+LASGSDDGSVKLWSINQ       GVS+GTIKTKANVCCVQFPL
Sbjct: 673 ERRVWSIDFSSADPTMLASGSDDGSVKLWSINQ-------GVSVGTIKTKANVCCVQFPL 725

Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLW 779
           DS R LAFGSADHRIYYYDLRN K+PLCTL+GHNKTVSY+KFVD   LVSASTDNTLKLW
Sbjct: 726 DSARFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLW 785

Query: 780 DLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFN 839
           DLS C SRVID+P+ SFTGH NVKNFVGLSV DGY+ATGSETNEVF+YHKAFPMPALSF 
Sbjct: 786 DLSTCASRVIDSPIQSFTGHANVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFK 845

Query: 840 FNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
           F + DPLSG E DDA QF+SSVCW GQSS+TL+AANS+GN+KILEMV
Sbjct: 846 FQNTDPLSGNEVDDAVQFVSSVCWHGQSSSTLLAANSTGNVKILEMV 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546870|ref|XP_003541845.1| PREDICTED: protein SPA1-RELATED 3-like [Glycine max]

 Score = 1217 bits (3149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/887 (70%), Positives = 717/887 (80%), Gaps = 24/887 (2%)

Query: 2   NPRLLRGERFGVRGDDSNDFELRKHSDGVELTHGDHLRN-QGGLSGVCENEAAIDPFVHA 60
           N R+   +R    G+ S D   RK  D   L  G   +N  GG SG+CE+E  +DPF  A
Sbjct: 28  NQRVHCPQRNPFLGEASQDSGFRKERDRFLLAQGGQPKNLGGGFSGLCEDEVEVDPFFCA 87

Query: 61  IEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNH 120
           +EWGD+SLRQWLDKP+RSV  +ECLHIFRQIVEIV  AHSQG+VVHNVRPSCFVMSSFNH
Sbjct: 88  VEWGDISLRQWLDKPERSVGAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNH 147

Query: 121 VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLV-TAPTN 179
           +SFIESASCSD+GSDS  EGLN Q  E K  +S  P DM Q+   +  ED   V T  T 
Sbjct: 148 ISFIESASCSDTGSDSLGEGLNNQGGEVKTPTSLCPHDMPQQS--MGSEDFMPVKTLTTP 205

Query: 180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYA 239
             S++SCM SS+ Y     L+E  +E+K+ D R + ++VE KKQ FPMKQILLME +WY 
Sbjct: 206 AQSDSSCMLSSAVYAARASLIEETEENKMKDRRKD-DEVEGKKQSFPMKQILLMEMSWYT 264

Query: 240 SPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEA 299
           SPEE AG   SCASD+YRLGVLLFELFCP S+ EEK+RTMSSLRHRVLPPQLLLK+PKEA
Sbjct: 265 SPEEGAGESSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEA 324

Query: 300 SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQ 359
           SFCLWLLHP+PSGRP +GELLQS+FLNE RD MEEREAAIELR++ID++ELLLEFLLL+Q
Sbjct: 325 SFCLWLLHPDPSGRPTLGELLQSDFLNEQRDDMEEREAAIELRQRIDDQELLLEFLLLLQ 384

Query: 360 QRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIID 419
           QRKQE A+KLQ  VSF+CSDIEEV+KQ    ++  G    AEL +D+ S  + PS+ ++D
Sbjct: 385 QRKQEVAEKLQHTVSFLCSDIEEVTKQHVRFKEITG----AELGSDEHSASSFPSMTVVD 440

Query: 420 NDCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLES 479
           ++ SA +G+RKR R  + + ++EEC D++ D+QK N +      L KSSRLMKNFKKLES
Sbjct: 441 SEGSAFLGTRKRVRLGMDVKNIEECVDDVGDDQKSNGS-----FLSKSSRLMKNFKKLES 495

Query: 480 AYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINP 539
           AYFLTRCRP   SG+  VRH  ++SDGR S  ++ ERS IN+L SKE   EG  S WINP
Sbjct: 496 AYFLTRCRPAYSSGKLAVRHPPVTSDGRGS-VVMTERSCINDLKSKEQCREGA-SAWINP 553

Query: 540 FLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDA 599
           FLEGLCKYLSFSKL+VKADL QGDLL+SSNLVCSLSFDRDGE FA AGVNKKIKVFECD+
Sbjct: 554 FLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDS 613

Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           IINE+RDIHYPVVEMASRSKLSSICWN+YIKSQIASSNFEGVVQ+WDV+RSQV++EMREH
Sbjct: 614 IINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVISEMREH 673

Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           ERRVWSIDFSSADPT+LASGSDDGSVKLWSINQ       GVS+GTIKTKANVCCVQFPL
Sbjct: 674 ERRVWSIDFSSADPTMLASGSDDGSVKLWSINQ-------GVSVGTIKTKANVCCVQFPL 726

Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLW 779
           DS R LAFGSADHRIYYYDLRN K+PLCTL+GHNKTVSY+KFVD   LVSASTDNTLKLW
Sbjct: 727 DSARFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLW 786

Query: 780 DLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFN 839
           DLS C SRVID+P+ SFTGH NVKNFVGLSV DGY+ATGSETNEVF+YHKAF MPALSF 
Sbjct: 787 DLSTCASRVIDSPIQSFTGHANVKNFVGLSVSDGYIATGSETNEVFIYHKAFSMPALSFK 846

Query: 840 FNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
           F + DPLSG E DDAAQF+SSVCWRGQSS TL+AANS+GN+KILEMV
Sbjct: 847 FQNTDPLSGNEVDDAAQFVSSVCWRGQSS-TLLAANSTGNVKILEMV 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452949|ref|XP_003596751.1| SPA1-like protein [Medicago truncatula] gi|355485799|gb|AES67002.1| SPA1-like protein [Medicago truncatula]

 Score = 1193 bits (3086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/877 (69%), Positives = 706/877 (80%), Gaps = 34/877 (3%)

Query: 15  GDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAI-DPFVHAIEWGDVSLRQWLD 73
           G+ S D   RK  D +    GD  +N GG    CE E    DPF  ++EWGD+SLRQWLD
Sbjct: 28  GEGSQDSRFRKERDWIHGAQGDQNKNLGGF---CEGEEVENDPFFSSVEWGDISLRQWLD 84

Query: 74  KPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG 133
           KP RSVD +ECLHIFRQIVEIV AAH QG+VVHNVRPSCFVMSSFNH+SFIESASCSD+ 
Sbjct: 85  KPDRSVDFFECLHIFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTS 144

Query: 134 SDSHEEGLNT-QNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSA 192
           SDS  +G+N  Q +E K  +S  P D++ +++    ED       T+  S++SCM SS+ 
Sbjct: 145 SDSLGDGVNNDQGVEVKTPTSHCPRDIMHQQS-FGSEDFMPAKISTDARSDSSCMLSSAV 203

Query: 193 YGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCA 252
           Y     L+E  +E+K+ D R + E+VE KKQ FPMKQILLME +WY SPEE+AG P SCA
Sbjct: 204 YAARASLIEETEENKMKDMRKD-EEVEGKKQSFPMKQILLMEMSWYTSPEEVAGTPSSCA 262

Query: 253 SDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSG 312
           SD+YRLG+LLFELFCP S+ EEK+RTMSSLRHRVLPPQLLLK+PKEASFCLWLLHP+PS 
Sbjct: 263 SDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSS 322

Query: 313 RPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDI 372
           RP +GELLQSEFLNE RD MEEREAAIELR++I++EELLLEFL L++QRKQE A+KLQ  
Sbjct: 323 RPTLGELLQSEFLNEQRDDMEEREAAIELRQKIEDEELLLEFLSLLKQRKQEVAEKLQHT 382

Query: 373 VSFICSDIEEVSKQQAILRKKGGLGSFAELA-NDDLSGLNIPSLNIIDNDCSATMGSRKR 431
           +SF+CSDIEEV+K+Q   ++  G+    EL  +DD S    PS+ +ID++ SA +G+RKR
Sbjct: 383 ISFLCSDIEEVTKKQTRFKEIAGV----ELGGSDDRSASTFPSMTVIDSEDSACLGTRKR 438

Query: 432 FRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKP 491
            R  +   HL+ECDDN++ +QK     N    L K+SRLMKNFKKLESAYFLTRC+P   
Sbjct: 439 VRLGM---HLDECDDNMESDQK-----NHGSFLSKNSRLMKNFKKLESAYFLTRCKPTYS 490

Query: 492 SGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGR--RSGWINPFLEGLCKYLS 549
           SGRP VRHS +++ GR S  +++ERS IN+L  K+   +GR   S WINPFLEGLCKYLS
Sbjct: 491 SGRPGVRHSTIANGGRGS-VVMSERSCINSLALKD---QGRDSASAWINPFLEGLCKYLS 546

Query: 550 FSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHY 609
           FSKL+VKADL QGDLL+SSNLVCSLSFDRDGE FA AGVNKKIK+FECD II  +RDIHY
Sbjct: 547 FSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIIKGDRDIHY 606

Query: 610 PVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFS 669
           PVVEMA RSKLSS+CWN+YIKSQIASSNFEGVVQ+WDV+RSQ+L+EMREHERRVWSIDFS
Sbjct: 607 PVVEMACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQILSEMREHERRVWSIDFS 666

Query: 670 SADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS 729
           SADPT+LASGSDDGSVKLWSINQ       GVSIGTIKTKANVCCVQFPLDS R LAFGS
Sbjct: 667 SADPTMLASGSDDGSVKLWSINQ-------GVSIGTIKTKANVCCVQFPLDSARYLAFGS 719

Query: 730 ADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVI 789
           ADHRIYYYDLRN ++PLCTL+GHNKTVSY+KFVD   LVSASTDNTLKLWDLS CTSRV+
Sbjct: 720 ADHRIYYYDLRNLRVPLCTLVGHNKTVSYIKFVDNVNLVSASTDNTLKLWDLSTCTSRVV 779

Query: 790 DTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGP 849
           D+P+ SFTGHTNVKNFVGLSV DGY+ATGSETNEVFVYHKAFPMPAL F F + DP+SG 
Sbjct: 780 DSPIQSFTGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALQFKFQNTDPISGN 839

Query: 850 ETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
           E DDAAQF+SSVCWRGQS  TL+AANS+GN+KILEMV
Sbjct: 840 EVDDAAQFVSSVCWRGQSP-TLIAANSTGNVKILEMV 875

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128308|ref|XP_002329131.1| predicted protein [Populus trichocarpa] gi|222869800|gb|EEF06931.1| predicted protein [Populus trichocarpa]

 Score = 1188 bits (3073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/867 (72%), Positives = 707/867 (81%), Gaps = 49/867 (5%)

Query: 23  LRKHSDGVELTHGDHLRNQGG-LSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDV 81
            RK +D V L    +L+NQ G LSGVCE+EAA+D FV  +EW DVSLR WL+KP+RSVD 
Sbjct: 37  FRKETDRVVLAR-QNLKNQAGTLSGVCEDEAAVDHFVQNMEWNDVSLRHWLNKPERSVDE 95

Query: 82  YECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGL 141
           +ECLHIFRQIVEIV  AHSQGIVVHNVRPSCFVMSSFNHVSFIESAS SDSGSDS ++GL
Sbjct: 96  FECLHIFRQIVEIVNVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASYSDSGSDSLDDGL 155

Query: 142 NTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVE 201
           N Q +E K+ SS    DM Q+R                                ++ L E
Sbjct: 156 NRQTVEVKNASS-FSHDMCQQR--------------------------------NLPLGE 182

Query: 202 GMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL 261
             +E+K+L  R NVE  EE+KQPFPMKQILLME++WY SPEE+AG+P SCASDIY+LGVL
Sbjct: 183 ETEENKVLGTR-NVEHEEERKQPFPMKQILLMESSWYTSPEEVAGSPSSCASDIYQLGVL 241

Query: 262 LFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
           LFELF PF++ E+K+RTMSSLRHRVLPPQLLLK+PKEASFCLWLLHPEPS RPKMGELLQ
Sbjct: 242 LFELFSPFTSREDKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRPKMGELLQ 301

Query: 322 SEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIE 381
           SEFLNEPRD +EEREAAI+LRE+I+E+ELLLEFLL +QQRKQ++A KLQ  VS +CSDIE
Sbjct: 302 SEFLNEPRDYLEEREAAIQLRERIEEQELLLEFLLPMQQRKQDAANKLQGTVSLLCSDIE 361

Query: 382 EVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHL 441
           EV+K Q  L+KKG   +  E    D    N+P LNI D D S+++GSRKRF   LQ+ + 
Sbjct: 362 EVTKHQTFLKKKGS--TCKERGEGDHLASNLPPLNIYDIDDSSSLGSRKRFCSGLQILNT 419

Query: 442 EECDDNLDDNQKHN-LTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRP-LVRH 499
           E CDDNL++ +  +    ++E  LF+SSRLMKNFKKLESAYFLTR RPV+P G+P  VR+
Sbjct: 420 EGCDDNLNEGRNSDTFVESQESPLFRSSRLMKNFKKLESAYFLTRSRPVRPPGKPPFVRN 479

Query: 500 SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADL 559
           S +S DGR S  +V ERSSIN+L  K+ + +GR+SGWI+PFLEGLCKYLS+SKL+VKADL
Sbjct: 480 SPVSGDGRGSI-VVTERSSINSLALKDRFIKGRQSGWISPFLEGLCKYLSYSKLKVKADL 538

Query: 560 NQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSK 619
            QGDLLNSSNLVCSLSFDRDGE FA AGVNKKIKVFECD IINE RDIHYPVVEM SRSK
Sbjct: 539 KQGDLLNSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDTIINEARDIHYPVVEMVSRSK 598

Query: 620 LSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASG 679
           LSSICWN YI SQIASSNFEGVVQVWDV+RSQV+TEMREHERRVWSIDFSSADPT+LASG
Sbjct: 599 LSSICWNRYITSQIASSNFEGVVQVWDVTRSQVVTEMREHERRVWSIDFSSADPTMLASG 658

Query: 680 SDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDL 739
           SDDGSVKLWSINQ       GVSIG+IKTKANVC VQFP+DS RS+AFGSADHRIYYYDL
Sbjct: 659 SDDGSVKLWSINQ-------GVSIGSIKTKANVCSVQFPMDSSRSIAFGSADHRIYYYDL 711

Query: 740 RNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH 799
           RNSK+PLCTLIGHNKTVSYVKFVD T +VSASTDNTLKLWDLSM TSRVID PL SFTGH
Sbjct: 712 RNSKVPLCTLIGHNKTVSYVKFVDTTNIVSASTDNTLKLWDLSMGTSRVIDNPLQSFTGH 771

Query: 800 TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFIS 859
            NVKNFVGLSV DGY+ATGSETNEVFVYHKAFPMP LSF FN+ DPLSG E DDAAQFIS
Sbjct: 772 MNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSFKFNNTDPLSGHEMDDAAQFIS 831

Query: 860 SVCWRGQSSNTLVAANSSGNIKILEMV 886
           SVCWRGQSS TLVAANS+GNIKILEMV
Sbjct: 832 SVCWRGQSS-TLVAANSTGNIKILEMV 857

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114936|ref|XP_002316897.1| predicted protein [Populus trichocarpa] gi|222859962|gb|EEE97509.1| predicted protein [Populus trichocarpa]

 Score = 1182 bits (3059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/866 (71%), Positives = 707/866 (81%), Gaps = 56/866 (6%)

Query: 24  RKHSDGVELTHGDHLRNQGG-LSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVY 82
           ++ +D V L    +L+NQ G LSGVCE+EAA+D F+  IEW DVSLR WLDKP+RSV+ +
Sbjct: 39  KERTDRVVLAR-QNLKNQAGTLSGVCEDEAAVDRFMQTIEWNDVSLRHWLDKPQRSVNEF 97

Query: 83  ECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLN 142
           EC HIFRQ+VE+V  AHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDS ++GLN
Sbjct: 98  ECSHIFRQVVEVVNVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSLDDGLN 157

Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
           ++ ME K+ SS LP DM Q+R                                +V LVE 
Sbjct: 158 SETMEVKNSSSSLPHDMCQQR--------------------------------NVPLVEE 185

Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLL 262
            +EHK+ D R NVE  EE+KQPFPMKQILLME+ WY SPEE AG+P SCASDIYRLGVLL
Sbjct: 186 TEEHKVHDMR-NVEHEEERKQPFPMKQILLMESCWYTSPEEDAGSPSSCASDIYRLGVLL 244

Query: 263 FELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS 322
           FELFCPF++ E+K+RTMSSLRHRVLPPQLLLK+ KEASFCLWLLHPEPS RPK+GELLQS
Sbjct: 245 FELFCPFTSSEDKSRTMSSLRHRVLPPQLLLKWSKEASFCLWLLHPEPSSRPKIGELLQS 304

Query: 323 EFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEE 382
           +FLNEP +++EE EAA +LRE+I+E+ELLLEFLLL+QQRKQ++A KLQD +S +CSDIEE
Sbjct: 305 DFLNEPINNLEELEAATQLRERIEEQELLLEFLLLIQQRKQDAADKLQDTISLLCSDIEE 364

Query: 383 VSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLE 442
           V+K Q  L+KKG   +  E    D    NIP+LN++D D S+++GSRKRF P L++H++E
Sbjct: 365 VTKHQVFLKKKGD--TCKERGEGDHLTSNIPALNVVDIDDSSSLGSRKRFCPGLEIHNVE 422

Query: 443 ECDDNLDDNQKHN-LTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRP-LVRHS 500
           +CDDNLD++Q  +    ++E  LF+SSRLMKNFKKLESAYFLTRCRPV+P G+P   R+ 
Sbjct: 423 KCDDNLDESQNSDTFVESQESPLFRSSRLMKNFKKLESAYFLTRCRPVRPPGKPSFARNL 482

Query: 501 QLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLN 560
            + SDGR S  +  ERSSIN++  K+ ++EGRRSGWI+PFLEGLCKYLSFSKL+VKADL 
Sbjct: 483 PVISDGRISI-VATERSSINSIAPKQQFTEGRRSGWISPFLEGLCKYLSFSKLKVKADLK 541

Query: 561 QGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKL 620
           QGDLLNSSNLVCS+SFDRDGE FA AGVNKKIKVFECD IINE RDIHYPVVEM  RSKL
Sbjct: 542 QGDLLNSSNLVCSISFDRDGEFFATAGVNKKIKVFECDTIINEARDIHYPVVEMVCRSKL 601

Query: 621 SSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGS 680
           SSICWNSYIKSQ+ASSNFEGVVQVWDV+RSQV+TEMREHERRVWS+DFSSADPT+LASGS
Sbjct: 602 SSICWNSYIKSQLASSNFEGVVQVWDVTRSQVVTEMREHERRVWSVDFSSADPTMLASGS 661

Query: 681 DDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR 740
           DDGS               GVSIG+IKTKAN+CCVQFPLDS  S+AFGSADHRIYYYDLR
Sbjct: 662 DDGS---------------GVSIGSIKTKANICCVQFPLDSSCSIAFGSADHRIYYYDLR 706

Query: 741 NSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT 800
           NSK+PLCTLIGHNKTVSYVKFVD T LVSASTDNTLKLWDLSM TSRVID+P+ SFTGH 
Sbjct: 707 NSKVPLCTLIGHNKTVSYVKFVDMTNLVSASTDNTLKLWDLSMGTSRVIDSPVQSFTGHM 766

Query: 801 NVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISS 860
           N KNFVGLSV DGY+ATGSETNEVFVYHKAFPMP LSF FN+ DPLSG E DD AQFISS
Sbjct: 767 NAKNFVGLSVADGYIATGSETNEVFVYHKAFPMPVLSFKFNNTDPLSGHEMDDTAQFISS 826

Query: 861 VCWRGQSSNTLVAANSSGNIKILEMV 886
           VCWRGQSS TLVAANS+GNIKILEMV
Sbjct: 827 VCWRGQSS-TLVAANSTGNIKILEMV 851

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446929|ref|XP_004141223.1| PREDICTED: protein SPA1-RELATED 3-like [Cucumis sativus] gi|449498653|ref|XP_004160596.1| PREDICTED: protein SPA1-RELATED 3-like [Cucumis sativus]

 Score = 1169 bits (3023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/852 (70%), Positives = 692/852 (81%), Gaps = 22/852 (2%)

Query: 36  DHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIV 95
           DHLRN   +SGVCE +   DP++ + +W D+SLRQWLDKP RSVD  ECLHIFRQIVEIV
Sbjct: 20  DHLRNLDDISGVCEEDILADPYLRSHKWSDISLRQWLDKPGRSVDALECLHIFRQIVEIV 79

Query: 96  YAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPL 155
             AH+QGIVVHNVRPSCFVMSSFNHV+FIESASCSDSGSDS E+G+N+Q  E K  SSP 
Sbjct: 80  NIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGINSQMAEVKTSSSPF 139

Query: 156 PLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNV 215
           P       + L  E  + V  P N LSE SCMQSSS Y     L EG  + +  D R ++
Sbjct: 140 P-------SSLGSEGFRSVMTPINALSETSCMQSSSIYAAQASLNEGFGKFRKKDRR-HI 191

Query: 216 EQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEK 275
           E+ E+K Q FPMKQIL MET WY SPEE + +P S ASDIYRLGVLLFELFC FS+ EEK
Sbjct: 192 EETEDKVQSFPMKQILAMETTWYTSPEEASDSPSSSASDIYRLGVLLFELFCSFSSREEK 251

Query: 276 TRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEER 335
            RTMSSLRHRVLP QLLLK+PKEASFCLWLLHPEP+ RPK+ ELLQS FLNEP+D +EER
Sbjct: 252 NRTMSSLRHRVLPTQLLLKWPKEASFCLWLLHPEPTNRPKLSELLQSVFLNEPKDDLEER 311

Query: 336 EAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGG 395
           EAAI+LR++I+E+ELLLEFLLL+QQRKQE+A KLQD +SF+CSDIE+V + Q   +K   
Sbjct: 312 EAAIKLRKKIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVMRHQTNFKK--N 369

Query: 396 LGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNLDDNQK-H 454
           +GS  +L  D+   LN+PS+  + N  SA +GSRKRFRP +  H +E C DNLD   K  
Sbjct: 370 IGSHTDLVKDNHLPLNLPSMPPVRNTDSAALGSRKRFRPGILTHDIEACGDNLDHCSKTS 429

Query: 455 NLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVN 514
           +   NE+  LFKSSRLMKNFKKLE AYFL R R  KPS R  V+HS +SSDGR S  L  
Sbjct: 430 SENDNEQGVLFKSSRLMKNFKKLELAYFLMRGRVNKPS-RQFVKHSSVSSDGRGSVVLT- 487

Query: 515 ERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSL 574
           ERSS+NNL SKE  ++ R+ GWI+PFLEGLCKYLSFSKL+VKADL QGDLLNSSNLVCSL
Sbjct: 488 ERSSVNNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSL 547

Query: 575 SFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIA 634
           SFDRDGE FA AGVN+KIKVF  D+I+NE+RDIHYPVVEMASRSKLSS+CWN YIKSQIA
Sbjct: 548 SFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIA 607

Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI 694
           SSNFEGVVQVWDV+RSQV+TEM EHERRVWSIDFSSADPT+LASGSDDGSVKLWSINQ  
Sbjct: 608 SSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQ-- 665

Query: 695 LLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
                G+SIGTI+TKANVCCVQFP+DSGRSLAFGSADH+IYYYD+RN ++PLCT  GHNK
Sbjct: 666 -----GISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNK 720

Query: 755 TVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGY 814
           TVSYVK++D++TLVSASTDNTLKLWDLSM TSRV+D+P+ SFTGH N+KNFVGLSV DGY
Sbjct: 721 TVSYVKYIDSSTLVSASTDNTLKLWDLSMSTSRVVDSPVQSFTGHMNIKNFVGLSVSDGY 780

Query: 815 VATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAA 874
           +ATGSETNEVFVYHKAFPMPALS+ F   DPLS  E DD+AQFISSVCWR QSS +LVAA
Sbjct: 781 IATGSETNEVFVYHKAFPMPALSYKF-QIDPLSSHEMDDSAQFISSVCWRSQSS-SLVAA 838

Query: 875 NSSGNIKILEMV 886
           NS+G+IKILEMV
Sbjct: 839 NSTGHIKILEMV 850

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75335085|sp|Q9LJR3.1|SPA3_ARATH RecName: Full=Protein SPA1-RELATED 3 gi|9294263|dbj|BAB02165.1| photomorphogenesis repressor protein-like [Arabidopsis thaliana] gi|330688323|gb|AEC32932.1| SPA3 isoform 1 [Arabidopsis thaliana]

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/846 (65%), Positives = 671/846 (79%), Gaps = 68/846 (8%)

Query: 49  ENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV 108
           ++   IDPFV ++EWGDVSLRQWLDKP+RSVDV+ECLH+FRQIVEIV AAHSQGIVVHNV
Sbjct: 59  DDSLGIDPFVRSLEWGDVSLRQWLDKPERSVDVFECLHVFRQIVEIVNAAHSQGIVVHNV 118

Query: 109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRR 168
           RPSCFVMSSFNHVSFIESASCSDSGSDS E+G  +Q    K++ S             RR
Sbjct: 119 RPSCFVMSSFNHVSFIESASCSDSGSDSLEDGPISQ----KEIGSS------------RR 162

Query: 169 EDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMK 228
           E+          +S+A  ++    Y            +K+L+ ++   + EEK QPFPMK
Sbjct: 163 EEA---------VSKAIAIEEKGVY------------NKLLERKIEKLE-EEKTQPFPMK 200

Query: 229 QILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLP 288
            IL MET+WY SPEE  G+  +CASD+YRLGVLLFELFCP  + EEK+RTMSSLRHRVLP
Sbjct: 201 HILAMETSWYTSPEEDFGSSSTCASDVYRLGVLLFELFCPVPSREEKSRTMSSLRHRVLP 260

Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEE 348
           PQ+LLK PKEASFCLWLLHPEP+ RP M +LLQSEF+ EPRD++EEREAAIELR++I+E+
Sbjct: 261 PQILLKCPKEASFCLWLLHPEPTCRPSMSDLLQSEFITEPRDNLEEREAAIELRDRIEEQ 320

Query: 349 ELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDD-- 406
           E LLEFLLL+QQRKQESA +LQD VS + SDIE+V K+Q IL+K+G   S ++ + DD  
Sbjct: 321 ESLLEFLLLIQQRKQESAYRLQDTVSLLSSDIEQVVKRQLILKKRGS--SLSDFSKDDHQ 378

Query: 407 -LSGLNIPSLNIIDNDCSATMGSRKRFRPE-LQLHHLEECDDNLDDNQKHNLTGNEERSL 464
             SG  + S    + + SA + SRKR R   L L +  E D+            ++  +L
Sbjct: 379 YTSGQPLMSFQA-NEEPSAFLASRKRVRQGILALENGVEVDEE-----------SQGSTL 426

Query: 465 FKSSRLMKNFKKLESAYFLTRCRPVKP--SGRPLVRHSQLSSDGRTSKPLVNERSSINNL 522
            +SSRLM+NFKKLES YFLTR R +K   SG+ L RHS LSS+      +V+E+SS++N 
Sbjct: 427 LESSRLMRNFKKLESVYFLTRRRQMKAAASGKSLTRHSPLSSENGRGSMIVSEKSSVSNP 486

Query: 523 GSKEGY--SEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDG 580
            + + +  ++ R+ GWI+PFLEGLC+YLSFS+LRVKADL QGDLLNSSNLVC+L+FDR+G
Sbjct: 487 VAPKAFFNNDSRQGGWIDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDREG 546

Query: 581 ELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEG 640
           ELFA AGVNKKIK+FEC++I+N+NRDIHYPVVE+A RSKLSS+CWNSYIKSQIASSNF+G
Sbjct: 547 ELFATAGVNKKIKIFECNSIVNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASSNFDG 606

Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLG 700
           VVQ+WDV+RSQ++TEM+EH++RVWSID SSADPTLLASGSDDG+VKLWSINQ       G
Sbjct: 607 VVQIWDVARSQLVTEMKEHKKRVWSIDISSADPTLLASGSDDGTVKLWSINQ-------G 659

Query: 701 VSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVK 760
           VSIGTIKTKANVCCVQFP DSGRSLAFGSADH++YYYDLRN KIPLCT+IGH+KTVSYVK
Sbjct: 660 VSIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVK 719

Query: 761 FVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSE 820
           FVD++TLVS+STDNTLKLWDLSM  S + ++PLHSFTGHTN+KNFVGLSV DGY+ATGSE
Sbjct: 720 FVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSE 779

Query: 821 TNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNI 880
           TNEVFVYHKAFPMP +S+ FN+ D +SG E DDA+QFISS+CWRGQSS TLVAANS+GNI
Sbjct: 780 TNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSS-TLVAANSNGNI 838

Query: 881 KILEMV 886
           KILEM+
Sbjct: 839 KILEMM 844

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545455|ref|XP_003541158.1| PREDICTED: protein SPA1-RELATED 3-like [Glycine max]

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/824 (66%), Positives = 643/824 (78%), Gaps = 38/824 (4%)

Query: 64  GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSF 123
           GD+SLR WLDKP+RSV+V ECLHIFR+IVEIV+ AHSQGIVVHNVRPSCFVMSSFNHVSF
Sbjct: 2   GDISLRLWLDKPERSVNVSECLHIFREIVEIVHVAHSQGIVVHNVRPSCFVMSSFNHVSF 61

Query: 124 IESASCSDSGSDSHEEGLNTQNMETKDLSSPLP-LDMLQRRTRLRREDLQLVTAPTNDLS 182
           IESA+CSDSGSD+ EE +  +        +P P  DM Q+R  L  ED   V   T  L+
Sbjct: 62  IESATCSDSGSDTLEEAVEIKT------PTPTPSYDMHQQRC-LGSEDFVPVKTSTASLT 114

Query: 183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE 242
           ++SCM SS  +     L++  +E+K + NR   E+V  KKQ F  KQ+L ME +WY SPE
Sbjct: 115 DSSCMLSSLVFVAPASLIDDTEENK-MKNRRKDEEVAVKKQSFSTKQVLQMEASWYTSPE 173

Query: 243 ELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFC 302
           E AGA  SCASD+YRLGVLLFELFCP  + EEK+RTMS LRHRVLPPQLLLK+PKEASFC
Sbjct: 174 EFAGASPSCASDVYRLGVLLFELFCPLISREEKSRTMSGLRHRVLPPQLLLKWPKEASFC 233

Query: 303 LWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRK 362
           LWLLHPEP+ RP +G+LLQSEFLNEPRD +E  EAA+E+RE+ID++ELL EFL L+QQ+K
Sbjct: 234 LWLLHPEPNSRPTIGQLLQSEFLNEPRDDIENCEAAVEVRERIDDQELLQEFLSLIQQKK 293

Query: 363 QESAKKLQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDC 422
           +E+A+KLQ  +SF+CSDIEE +KQ+ +  +  G G       DD +    PS+ ++DN+ 
Sbjct: 294 EEAAEKLQHTISFLCSDIEEATKQKTLFNEITGTGL------DDCTTSTFPSITVVDNEE 347

Query: 423 SATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYF 482
           SA +G+RKR R    +   E  D+N+ D+QK     N+   L K+ R + N +KLESAYF
Sbjct: 348 SACLGTRKRVRTIPCVDDTEGIDNNMSDDQK-----NDRSILSKTPRFLNNLQKLESAYF 402

Query: 483 LTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLE 542
           LTRC+    SG+  V+HS + +D         ERS +N +  KE + EG+ S W NPFLE
Sbjct: 403 LTRCKSAYSSGKLAVQHSPIGTD---------ERSCVNKVALKEKFREGK-SPWTNPFLE 452

Query: 543 GLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN 602
           GL KYLSFSKL+VKADL QGDLL SSNLVCSLSFDRD E FA AGVNKKIKVFEC+  IN
Sbjct: 453 GLSKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEYFATAGVNKKIKVFECNTTIN 512

Query: 603 ENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERR 662
           E+RDIHYPVVEM SRS LSS CWN+YIKSQIASSNFEGVVQ+WDV+RS V +EMREHE+R
Sbjct: 513 EDRDIHYPVVEMVSRSTLSSTCWNTYIKSQIASSNFEGVVQLWDVTRSHVQSEMREHEQR 572

Query: 663 VWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSG 722
           VWSIDFSSADPTLLASGSDDGSVKLW+INQ       G+S+GTIKTKANVCCVQFPL+  
Sbjct: 573 VWSIDFSSADPTLLASGSDDGSVKLWNINQ-------GISVGTIKTKANVCCVQFPLEFA 625

Query: 723 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLS 782
            SLAFGSADHRIYYYDLRN K+PLCTL+GH+KTVSY+KFVD  +LVSASTDNTLKLWDLS
Sbjct: 626 HSLAFGSADHRIYYYDLRNLKVPLCTLVGHDKTVSYIKFVDTMSLVSASTDNTLKLWDLS 685

Query: 783 MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNH 842
           +C SRVID+P+ SFTGH NVKNFVGLSV DGY+ATGSETNEVF+YHKAFPMPALSF F  
Sbjct: 686 LCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYS 745

Query: 843 ADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
           +DPL G E DD+ QFI+SVCWRGQSS TL+AANS+GN+KILEM 
Sbjct: 746 SDPLFGNEEDDSTQFITSVCWRGQSS-TLLAANSTGNVKILEMT 788

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	886
TAIR|locus:2037005	794	SPA4 "SPA1-related 4" [Arabido	0.510	0.569	0.682	1.4e-229
TAIR|locus:2136133	1036	SPA2 "SPA1-related 2" [Arabido	0.450	0.385	0.489	8e-142
TAIR|locus:2039139	1029	SPA1 "SUPPRESSOR OF PHYA-105 1	0.454	0.391	0.492	2.7e-141
DICTYBASE|DDB_G0288453	970	DDB_G0288453 "E3 ubiquitin-pro	0.399	0.364	0.477	2.7e-88
TAIR|locus:2059359	675	COP1 "CONSTITUTIVE PHOTOMORPHO	0.408	0.536	0.453	1.7e-84
UNIPROTKB|Q8NHY2	731	RFWD2 "E3 ubiquitin-protein li	0.388	0.470	0.451	2.5e-81
ZFIN|ZDB-GENE-070410-134	694	rfwd2 "ring finger and WD repe	0.388	0.495	0.457	3.1e-81
UNIPROTKB|F1MHX1	735	RFWD2 "Uncharacterized protein	0.388	0.468	0.449	4e-81
MGI|MGI:1347046	733	Rfwd2 "ring finger and WD repe	0.388	0.469	0.451	5.1e-81
UNIPROTKB|E2RRJ5	733	RFWD2 "Uncharacterized protein	0.388	0.469	0.449	1.3e-80

TAIR|locus:2037005 SPA4 "SPA1-related 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1621 (575.7 bits), Expect = 1.4e-229, Sum P(2) = 1.4e-229
 Identities = 321/470 (68%), Positives = 378/470 (80%)

Query:   421 DCSATMGSRKRFRPELQLHHLEECDDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESA 480
             D  + + SRKR R   +    EE +D+   +++  L    E +L +SSRLM+N KKLES 
Sbjct:   339 DVRSFLASRKRIRQGAETTAAEEENDDNSIDEESKLDDTLESTLLESSRLMRNLKKLESV 398

Query:   481 YFLTRCRPVKPSG---RPLVRH-SQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGW 536
             YF TR R +K +    +PL R+ S LS +GR+S     E+SS++   SK+  ++ R+ GW
Sbjct:   399 YFATRYRQIKAATAAEKPLARYYSALSCNGRSS-----EKSSMSQ-PSKDPINDSRQGGW 452

Query:   537 INPFLEGLCKYLSFSKLRVKADLNQGDXXXXXXXXXXXXFDRDGELFAAAGVNKKIKVFE 596
             I+PFLEGLCKYLSFSKLRVKADL QGD            FDRDGE FA AGVNKKIK+FE
Sbjct:   453 IDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFE 512

Query:   597 CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEM 656
             C++II + RDIHYPVVE+ASRSKLS ICWNSYIKSQ+ASSNFEGVVQVWDV+R+Q++TEM
Sbjct:   513 CESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEM 572

Query:   657 REHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQ 716
             +EHE+RVWSID+SSADPTLLASGSDDGSVKLWSINQ       GVSIGTIKTKAN+CCVQ
Sbjct:   573 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-------GVSIGTIKTKANICCVQ 625

Query:   717 FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTL 776
             FP ++GRSLAFGSADH++YYYDLRN K+PLCT+IGH+KTVSYV+FVD++TLVS+STDNTL
Sbjct:   626 FPSETGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTL 685

Query:   777 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPAL 836
             KLWDLSM  S + +TPLHSF GHTNVKNFVGLSV DGY+ATGSETNEVFVYHKAFPMP L
Sbjct:   686 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL 745

Query:   837 SFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
             S+ F   DP+S  E DDA+QFISSVCWRGQSS TLVAANS+GNIKILEMV
Sbjct:   746 SYKFKTIDPVSELEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEMV 794

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2136133 SPA2 "SPA1-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 8.0e-142, Sum P(2) = 8.0e-142
 Identities = 206/421 (48%), Positives = 272/421 (64%)

Query:   469 RLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGY 528
             RL++N  +LESAYF  R     P  R  +R  +          L N  +++  + + E +
Sbjct:   635 RLIRNINQLESAYFAARIDAHLPEARYRLRPDR--------DLLRNSDNTVAEVENSETW 686

Query:   529 SEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDXXXXXXXXXXXXFDRDGELFAAAGV 588
             S   R G    F +GLCKY  +SK   +  L   +            FDRD + FA AGV
Sbjct:   687 SSDDRVG---AFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGV 743

Query:   589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
             +KKIK++E +++ NE+ DIHYP +EM +RSKLS +CWN+YI++ +ASS+++G+V++WDV+
Sbjct:   744 SKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVT 803

Query:   649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
               Q ++   EHE+R WS+DFS A PT LASGSDD SVKLW+IN+   L       GTI+ 
Sbjct:   804 TGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCL-------GTIRN 856

Query:   709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
              ANVCCVQF   S   LAFGS+D R Y YDLRN + P C L GHNK VSY KF+D  TLV
Sbjct:   857 IANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLV 916

Query:   769 SASTDNTLKLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSETNEVFV 826
             +ASTDNTLKLWDL   T   + T   S T  GHTN KNFVGLS  DGY+A GSETNEV+ 
Sbjct:   917 TASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYA 976

Query:   827 YHKAFPMPALSFNFNHADPLSGPETD-DAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 885
             YH++ PMP  S+ F   DP+SG E + D   F+SSVCWR + SN +V+A+S+G+IK+L++
Sbjct:   977 YHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWR-KRSNMVVSASSNGSIKVLQL 1035

Query:   886 V 886
             V
Sbjct:  1036 V 1036

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2039139 SPA1 "SUPPRESSOR OF PHYA-105 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.7e-141, Sum P(2) = 2.7e-141
 Identities = 209/424 (49%), Positives = 280/424 (66%)

Query:   467 SSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSSDGRTSKPLVN-ERSSINNLGSK 525
             + RLM N ++LE AYF  R +         +  S  ++  R+ K L + +R S N   ++
Sbjct:   623 TDRLMSNIRQLEDAYFFMRSQ---------INLSSSAATARSDKTLKDRDRCSENQNENQ 673

Query:   526 EGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDXXXXXXXXXXXXFDRDGELFAA 585
             +  ++G+ S  +  F EGLCK+  +SK      +  GD            FD D E  AA
Sbjct:   674 DMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAA 733

Query:   586 AGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVW 645
             AG++KKIK+F+ +A +NE+  +HYP+VEM ++SKLS +CWNSYIK+ +AS++++GVVQ+W
Sbjct:   734 AGISKKIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIW 793

Query:   646 DVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGT 705
             D    Q  ++  EH++R WS+DFS +DPT   SGSDD SVKLWSIN+         S+GT
Sbjct:   794 DAGTGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSINEKR-------SLGT 846

Query:   706 IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDAT 765
             I + ANVCCVQF   S   LAFGSAD+++Y YDLR  K P CTL GH K VSYVKF+D+ 
Sbjct:   847 IWSPANVCCVQFSSYSNHLLAFGSADYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSE 906

Query:   766 TLVSASTDNTLKLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSETNE 823
             T+VSASTDN+LKLW+L+   S  +     S T  GHTN KNFVGLSV DGY+A GSETNE
Sbjct:   907 TIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNE 966

Query:   824 VFVYHKAFPMPALSFNFNHADPLSGPET-DDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
             V+ Y+K+ PMP  S+ F   DP+SG E  DD  QF+SSVCWR + SN LVAANS+GN+K+
Sbjct:   967 VYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCWR-KKSNMLVAANSTGNMKL 1025

Query:   883 LEMV 886
             L++V
Sbjct:  1026 LKLV 1029

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048575 "short-day photoperiodism, flowering" evidence=IMP

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA;IMP

GO:2000028 "regulation of photoperiodism, flowering" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

GO:0009585 "red, far-red light phototransduction" evidence=IGI

DICTYBASE|DDB_G0288453 DDB_G0288453 "E3 ubiquitin-protein ligase RFWD2" [Dictyostelium discoideum (taxid:44689)]

 Score = 854 (305.7 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 179/375 (47%), Positives = 240/375 (64%)

Query:   514 NERSSINNLGSK-EGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDXXXXXXXXX 572
             N  S++NNL +  E    G+  G ++ F   L K+  +++ +V A L  GD         
Sbjct:   615 NTNSNLNNLNNNIESLKVGK--GLLS-FSRNLLKFTKYNEFKVLATLKYGDLFNTSSIVS 671

Query:   573 XXXFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ 632
                FDRD E FA AGV KKIK+FE   I  +N ++H PV EM  RSK+S + WN+YIKSQ
Sbjct:   672 SIEFDRDEEYFATAGVTKKIKIFEFSQI-RDNVEVHSPVKEMTCRSKISCLSWNTYIKSQ 730

Query:   633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
             IASS++EG++ +WD +  Q +  + EHE+RVWS+DFS  DPT LASGSDD  VKLWS   
Sbjct:   731 IASSDYEGIISLWDANTGQNIMTLEEHEKRVWSVDFSRTDPTQLASGSDDTRVKLWSTTT 790

Query:   693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 752
                      +I TI++KAN+CCV+F   S   +AFGSADH I+YYDLR  K PL    GH
Sbjct:   791 ER-------AITTIESKANICCVKFNPCSSNLIAFGSADHHIHYYDLRQYKDPLLIFKGH 843

Query:   753 NKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD 812
              K VSYVKF++   ++SASTD+TLKLW+++       +  + +FTGH+N KNFVGL+V  
Sbjct:   844 RKAVSYVKFMNKDEIISASTDSTLKLWNVNQ------NDCVRTFTGHSNEKNFVGLTVNG 897

Query:   813 GYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDD-AAQFISSVCWRGQSSNTL 871
              Y+  GSE N V+ Y+K    P ++  F  A+  +G ETDD  +QF+SSVCW+ + SN L
Sbjct:   898 DYICCGSENNGVYTYYKTLSKPIVTHRFG-ANSGTGEETDDDGSQFVSSVCWK-KDSNIL 955

Query:   872 VAANSSGNIKILEMV 886
             +AANS GNIKIL +V
Sbjct:   956 LAANSQGNIKILSLV 970

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2059359 COP1 "CONSTITUTIVE PHOTOMORPHOGENIC 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 820 (293.7 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 176/388 (45%), Positives = 235/388 (60%)

Query:   496 LVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRV 555
             L +  QL+ D   SK   N++S +     +EGYS G     +  F   L  +  +S+LRV
Sbjct:   310 LQKRRQLA-DQPNSKQ-ENDKSVVR----REGYSNG-----LADFQSVLTTFTRYSRLRV 358

Query:   556 KADLNQGDXXXXXXXXXXXXFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA 615
              A++  GD            FDRD ELFA AGV++ IKVF+  +++NE  D+  P+VEM+
Sbjct:   359 IAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMS 418

Query:   616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTL 675
             +RSKLS + WN + K+ IASS++EG+V VWDV+  Q L E  EHE+R WS+DFS  +P++
Sbjct:   419 TRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSM 478

Query:   676 LASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIY 735
             L SGSDD  VK+W   Q         S+  I  KAN+CCV++   S   +A GSADH I+
Sbjct:   479 LVSGSDDCKVKVWCTRQE-------ASVINIDMKANICCVKYNPGSSNYIAVGSADHHIH 531

Query:   736 YYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS 795
             YYDLRN   PL    GH K VSYVKF+    L SASTD+TL+LWD+        + P+ +
Sbjct:   532 YYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKD------NLPVRT 585

Query:   796 FTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAA 855
             F GHTN KNFVGL+V   Y+A GSETNEV+VYHK    P  S  F   D +   E +  +
Sbjct:   586 FRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPD-MDDAEEEAGS 644

Query:   856 QFISSVCWRGQSSNTLVAANSSGNIKIL 883
              FIS+VCW+  S  T++ ANS G IK+L
Sbjct:   645 YFISAVCWKSDSP-TMLTANSQGTIKVL 671

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=IGI;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000152 "nuclear ubiquitin ligase complex" evidence=TAS

GO:0009647 "skotomorphogenesis" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IGI;IMP

GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA;IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

GO:0009641 "shade avoidance" evidence=IMP

UNIPROTKB|Q8NHY2 RFWD2 "E3 ubiquitin-protein ligase RFWD2" [Homo sapiens (taxid:9606)]

 Score = 763 (273.6 bits), Expect = 2.5e-81, Sum P(3) = 2.5e-81
 Identities = 164/363 (45%), Positives = 216/363 (59%)

Query:   530 EGRRSGWINPFLEGLCKYLSFSKLRVKADLNQG-DXXXXXXXXXXXXFDRDGELFAAAGV 588
             + R +  ++ F E L K+  ++ +R  A L+   D            FDRD + FA AGV
Sbjct:   382 DSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 441

Query:   589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
              KKIKV+E D +I +  DIHYP  EM   SK+S I W+SY K+ +ASS++EG V +WD  
Sbjct:   442 TKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 501

Query:   649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
               Q     +EHE+R WS+DF+  DP LLASGSDD  VKLWS N       L  S+ +I+ 
Sbjct:   502 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTN-------LDNSVASIEA 554

Query:   709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
             KANVCCV+F   S   LAFG ADH ++YYDLRN+K P+    GH K VSY KFV    +V
Sbjct:   555 KANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIV 614

Query:   769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
             SASTD+ LKLW++           L SF GH N KNFVGL+    Y+A GSE N +++Y+
Sbjct:   615 SASTDSQLKLWNVGKPYC------LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYY 668

Query:   829 KAFPMPALSFNFNHADPLSGPET--DDAAQFISSVCWRGQ---SSNTLVAANSSGNIKIL 883
             K      L+F F+    +   +   DD  +F+S+VCWR      SN L+AANS G IK+L
Sbjct:   669 KGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVL 728

Query:   884 EMV 886
             E+V
Sbjct:   729 ELV 731

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

ZFIN|ZDB-GENE-070410-134 rfwd2 "ring finger and WD repeat domain 2" [Danio rerio (taxid:7955)]

 Score = 763 (273.6 bits), Expect = 3.1e-81, Sum P(3) = 3.1e-81
 Identities = 166/363 (45%), Positives = 217/363 (59%)

Query:   530 EGRRSGWINPFLEGLCKYLSFSKLRVKADLNQG-DXXXXXXXXXXXXFDRDGELFAAAGV 588
             + R    ++ F+E L K+  ++ +R  A L+   D            FDRD + FA AGV
Sbjct:   345 DSRTVNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 404

Query:   589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
              KKIKVFE   +I +  DIHYPV EM   SK+S I W+SY K+ +ASS++EG V +WD  
Sbjct:   405 TKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 464

Query:   649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
               Q     +EHE+R WS+DF+  DP LLASGSDD  VKLWS N       L  S+ +I+ 
Sbjct:   465 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTN-------LDNSVASIEA 517

Query:   709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
             KANVCCV+F   S   LAFG ADH ++YYDLRN+K P+    GH K VSY KFV+   +V
Sbjct:   518 KANVCCVKFSPTSRYHLAFGCADHCVHYYDLRNAKQPIMVFKGHRKAVSYAKFVNGGEIV 577

Query:   769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
             SASTD+ LKLW+++          L SF GH N KNFVGL+    YVA GSE N +++Y 
Sbjct:   578 SASTDSQLKLWNVNKPHC------LRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYC 631

Query:   829 KAFPMPALSFNFNHADPL--SGPETDDAAQFISSVCWRGQ---SSNTLVAANSSGNIKIL 883
             K      L+F F+    +     + DD  +F+S+VCWR      SN L+AANS G IK+L
Sbjct:   632 KGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVL 691

Query:   884 EMV 886
             E+V
Sbjct:   692 ELV 694

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MHX1 RFWD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 756 (271.2 bits), Expect = 4.0e-81, Sum P(3) = 4.0e-81
 Identities = 163/363 (44%), Positives = 215/363 (59%)

Query:   530 EGRRSGWINPFLEGLCKYLSFSKLRVKADLNQG-DXXXXXXXXXXXXFDRDGELFAAAGV 588
             + R +  ++ F E L K+  ++ +R  A L+   D            FDRD + FA AGV
Sbjct:   386 DSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 445

Query:   589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
              KKIKV+E   +I +  DIHYP  EM   SK+S I W+SY K+ +ASS++EG V +WD  
Sbjct:   446 TKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 505

Query:   649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
               Q     +EHE+R WS+DF+  DP LLASGSDD  VKLWS N       L  S+ +I+ 
Sbjct:   506 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTN-------LDNSVASIEA 558

Query:   709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
             KANVCCV+F   S   LAFG ADH ++YYDLRN+K P+    GH K VSY KFV    +V
Sbjct:   559 KANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIV 618

Query:   769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
             SASTD+ LKLW++           L SF GH N KNFVGL+    Y+A GSE N +++Y+
Sbjct:   619 SASTDSQLKLWNVGKPYC------LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYY 672

Query:   829 KAFPMPALSFNFNHADPLSGPET--DDAAQFISSVCWRGQ---SSNTLVAANSSGNIKIL 883
             K      L+F F+    +   +   DD  +F+S+VCWR      SN L+AANS G IK+L
Sbjct:   673 KGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVL 732

Query:   884 EMV 886
             E+V
Sbjct:   733 ELV 735

GO:0005925 "focal adhesion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1347046 Rfwd2 "ring finger and WD repeat domain 2" [Mus musculus (taxid:10090)]

 Score = 760 (272.6 bits), Expect = 5.1e-81, Sum P(3) = 5.1e-81
 Identities = 164/363 (45%), Positives = 216/363 (59%)

Query:   530 EGRRSGWINPFLEGLCKYLSFSKLRVKADLNQG-DXXXXXXXXXXXXFDRDGELFAAAGV 588
             + R +  ++ F E L K+  ++ +R  A L+   D            FDRD + FA AGV
Sbjct:   384 DSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 443

Query:   589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
              KKIKV+E   +I +  DIHYP  EM   SK+S I W+SY K+ +ASS++EG V +WD  
Sbjct:   444 TKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 503

Query:   649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
               Q     +EHE+R WS+DF+  DP LLASGSDD  VKLWS N       L  S+ +I+ 
Sbjct:   504 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTN-------LDNSVASIEA 556

Query:   709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
             KANVCCV+F   S   LAFG ADH ++YYDLRN+K P+    GH K VSY KFV    +V
Sbjct:   557 KANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIV 616

Query:   769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
             SASTD+ LKLW++           L SF GH N KNFVGL+    Y+A GSE N +++Y+
Sbjct:   617 SASTDSQLKLWNVGKPYC------LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYY 670

Query:   829 KAFPMPALSFNFNHADPLSGPET--DDAAQFISSVCWRGQS---SNTLVAANSSGNIKIL 883
             K      L+F F+    +   +   DD  +F+S+VCWR  S   SN L+AANS G IK+L
Sbjct:   671 KGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLIAANSQGTIKVL 730

Query:   884 EMV 886
             E+V
Sbjct:   731 ELV 733

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2RRJ5 RFWD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 756 (271.2 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
 Identities = 163/363 (44%), Positives = 215/363 (59%)

Query:   530 EGRRSGWINPFLEGLCKYLSFSKLRVKADLNQG-DXXXXXXXXXXXXFDRDGELFAAAGV 588
             + R +  ++ F E L K+  ++ +R  A L+   D            FDRD + FA AGV
Sbjct:   384 DSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV 443

Query:   589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
              KKIKV+E   +I +  DIHYP  EM   SK+S I W+SY K+ +ASS++EG V +WD  
Sbjct:   444 TKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF 503

Query:   649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
               Q     +EHE+R WS+DF+  DP LLASGSDD  VKLWS N       L  S+ +I+ 
Sbjct:   504 TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTN-------LDNSVASIEA 556

Query:   709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
             KANVCCV+F   S   LAFG ADH ++YYDLRN+K P+    GH K VSY KFV    +V
Sbjct:   557 KANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIV 616

Query:   769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
             SASTD+ LKLW++           L SF GH N KNFVGL+    Y+A GSE N +++Y+
Sbjct:   617 SASTDSQLKLWNVGKPYC------LRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYY 670

Query:   829 KAFPMPALSFNFNHADPLSGPET--DDAAQFISSVCWRGQ---SSNTLVAANSSGNIKIL 883
             K      L+F F+    +   +   DD  +F+S+VCWR      SN L+AANS G IK+L
Sbjct:   671 KGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVL 730

Query:   884 EMV 886
             E+V
Sbjct:   731 ELV 733

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LJR3	SPA3_ARATH	No assigned EC number	0.6572	0.8781	0.9207	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	886
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.0
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-11
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-09
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-06
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	4e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	0.002
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.002
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	0.002
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.003

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 1091 bits (2823), Expect = 0.0
 Identities = 542/863 (62%), Positives = 635/863 (73%), Gaps = 106/863 (12%)

Query: 32  LTHGDHLRNQGGLSGVCENEA-AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQ 90
           L+H D++R+  G       +    D  V A+E  DVSLRQWLD P RSVD +EC H+FRQ
Sbjct: 29  LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNPDRSVDAFECFHVFRQ 88

Query: 91  IVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKD 150
           IVEIV AAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSD  E+         ++
Sbjct: 89  IVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSD--EDATTKS----RE 142

Query: 151 LSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILD 210
           + S             RRE+                                     IL 
Sbjct: 143 IGSS------------RREE-------------------------------------ILS 153

Query: 211 NRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFS 270
            R   +  E KKQPFPMKQIL ME +WY SPEE  G+  +CASD+YRLGVLLFELFCP S
Sbjct: 154 ERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVS 213

Query: 271 TGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD 330
           + EEK+RTMSSLRHRVLPPQ+LL +PKEASFCLWLLHPEPS RP M ELLQSEF+NEPR+
Sbjct: 214 SREEKSRTMSSLRHRVLPPQILLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEPRE 273

Query: 331 SMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQDIVSFICSDIEEVSKQQAIL 390
           ++EEREAA+ELR++I+E+ELLLEFL L+QQRKQE+A KLQD +S + SDI++V K+Q +L
Sbjct: 274 NLEEREAAMELRDRIEEQELLLEFLFLIQQRKQEAADKLQDTISLLSSDIDQVVKRQLVL 333

Query: 391 RKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRP-ELQLHHLEECDDNLD 449
           ++KG                         +D  + + SRKR R     L   EE DDN  
Sbjct: 334 QQKG-------------------------SDVRSFLASRKRIRQGAETLAAEEENDDN-- 366

Query: 450 DNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSG---RPLVRHSQLSS-D 505
                 L    E +L +SSRLM+N KKLES YF TR R +K +    +PL R+    S +
Sbjct: 367 ---SSKLDDTLESTLLESSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLARYYSALSEN 423

Query: 506 GRTSKPLVNERSSINNLGSKEGY--SEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGD 563
           GR+S     E+SS++N      +  ++ R+ GWI+PFLEGLCKYLSFSKLRVKADL QGD
Sbjct: 424 GRSS-----EKSSMSNPAKPPDFYINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGD 478

Query: 564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSI 623
           LLNSSNLVC++ FDRDGE FA AGVNKKIK+FEC++II + RDIHYPVVE+ASRSKLS I
Sbjct: 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGI 538

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
           CWNSYIKSQ+ASSNFEGVVQVWDV+RSQ++TEM+EHE+RVWSID+SSADPTLLASGSDDG
Sbjct: 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598

Query: 684 SVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 743
           SVKLWSINQ       GVSIGTIKTKAN+CCVQFP +SGRSLAFGSADH++YYYDLRN K
Sbjct: 599 SVKLWSINQ-------GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651

Query: 744 IPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK 803
           +PLCT+IGH+KTVSYV+FVD++TLVS+STDNTLKLWDLSM  S + +TPLHSF GHTNVK
Sbjct: 652 LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711

Query: 804 NFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCW 863
           NFVGLSV DGY+ATGSETNEVFVYHKAFPMP LS+ F   DP+SG E DDA+QFISSVCW
Sbjct: 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW 771

Query: 864 RGQSSNTLVAANSSGNIKILEMV 886
           RGQSS TLVAANS+GNIKILEMV
Sbjct: 772 RGQSS-TLVAANSTGNIKILEMV 793

Length = 793

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  127 bits (321), Expect = 2e-32
 Identities = 81/314 (25%), Positives = 134/314 (42%), Gaps = 40/314 (12%)

Query: 571 VCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
           V  ++F  DG+L A    +  IKV++    +     +            +++    +Y+ 
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWD----LETGELLRTLKGHTGPVRDVAASADGTYL- 66

Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
              AS + +  +++WD+   + +  +  H   V S+ FS  D  +L+S S D ++K+W +
Sbjct: 67  ---ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDV 122

Query: 691 NQAILLLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
                    G  + T++   + V  V F  D G  +A  S D  I  +DLR  K  + TL
Sbjct: 123 ET-------GKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGK-CVATL 173

Query: 750 IGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGL 808
            GH   V+ V F  D   L+S+S+D T+KLWDLS          L +  GH N  N V  
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHENGVNSVAF 227

Query: 809 SVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSS 868
           S     +A+GSE   + V+                  LSG         ++S+ W     
Sbjct: 228 SPDGYLLASGSEDGTIRVWDLR--------TGECVQTLSGHTN-----SVTSLAW-SPDG 273

Query: 869 NTLVAANSSGNIKI 882
             L + ++ G I+I
Sbjct: 274 KRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (272), Expect = 6e-26
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 34/234 (14%)

Query: 558 DLNQGDLLNS----SNLVCSLSFDRDGELFAAAGVNKKIKVFE-----CDAIINENRDIH 608
           DL  G+ + +    ++ V S++F  DG + +++  +K IKV++     C   +  + D  
Sbjct: 79  DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-- 136

Query: 609 YPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDF 668
             V         +S+ ++    + +ASS+ +G +++WD+   + +  +  H   V S+ F
Sbjct: 137 -WV---------NSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 669 SSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAF 727
           S  D   L S S DG++KLW ++        G  +GT++   N V  V F    G  LA 
Sbjct: 186 S-PDGEKLLSSSSDGTIKLWDLST-------GKCLGTLRGHENGVNSVAF-SPDGYLLAS 236

Query: 728 GSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
           GS D  I  +DLR +   + TL GH  +V+ + +  D   L S S D T+++WD
Sbjct: 237 GSEDGTIRVWDLR-TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 30/230 (13%)

Query: 657 REHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQ 716
           + H   V  + F S D  LLA+GS DG++K+W +    LL  L    G ++         
Sbjct: 6   KGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRD-----VAA 59

Query: 717 FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNT 775
                G  LA GS+D  I  +DL   +  + TL GH   VS V F  D   L S+S D T
Sbjct: 60  SA--DGTYLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 776 LKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA 835
           +K+WD+           L +  GHT+  N V  S    +VA+ S+   + ++        
Sbjct: 117 IKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR----- 165

Query: 836 LSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 885
            +        L+G         ++SV +       L++++S G IK+ ++
Sbjct: 166 -TGKCVAT--LTGHT-----GEVNSVAFSP-DGEKLLSSSSDGTIKLWDL 206

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.4 bits (233), Expect = 3e-20
 Identities = 76/352 (21%), Positives = 131/352 (37%), Gaps = 53/352 (15%)

Query: 514 NERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCS 573
           N+   +         +        +     L   L    L    DL+   L    + + S
Sbjct: 11  NKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITS 70

Query: 574 LSFDRDGELFAAAGVNKKIKVFECD----------------------------------- 598
           ++F  DGEL  +   +  IK+++ D                                   
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 599 ------AIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV 652
                  + + +               ++S+ ++   K   + S+ +G +++WD+   + 
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 653 LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANV 712
           L+ +  H   V S+ FS     L+ASGS DG+++LW ++   LL        T+   ++ 
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR------STLSGHSDS 244

Query: 713 CCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAS 771
               F  D G  LA GS+D  I  +DLR+S   L TL GH+ +V  V F  D   L S S
Sbjct: 245 VVSSFSPD-GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 772 TDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNE 823
           +D T++LWDL         T      GH    + +  S     + +G   + 
Sbjct: 304 SDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.8 bits (216), Expect = 5e-18
 Identities = 96/399 (24%), Positives = 167/399 (41%), Gaps = 40/399 (10%)

Query: 445 DDNLDDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKPSGRPLVRHSQLSS 504
           D +  +    +L G  + S+ K +    +   +  A           S    V+   LS+
Sbjct: 93  DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS---------SSLDGTVKLWDLST 143

Query: 505 DGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDL 564
            G+  + L     S+ +L     +S   +       L+G  K       +  + L     
Sbjct: 144 PGKLIRTLEGHSESVTSLA----FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA---- 195

Query: 565 LNSSNLVCSLSFDRDGE-LFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSI 623
              ++ V SL+F  DG  L A+   +  I++++          +    +   S S +SS 
Sbjct: 196 -GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD-----LSTGKLLRSTLSGHSDSVVSSF 249

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSR-SQVLTEMREHERRVWSIDFSSADPTLLASGSDD 682
             +  +   +AS + +G +++WD+   S +L  +  H   V S+ FS  D  LLASGS D
Sbjct: 250 SPDGSL---LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSD 305

Query: 683 GSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNS 742
           G+V+LW +    LL  L +       +  V  + F  D    ++ GS D  I  +DLR  
Sbjct: 306 GTVRLWDLETGKLLSSLTL----KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 743 KIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
           K     L GH+  +S     D   + S STD T++LWDLS        + L +  GHT+ 
Sbjct: 362 KPLKT-LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST------GSLLRNLDGHTSR 414

Query: 803 KNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFN 841
              +  S     +A+GS  N + ++     + ++SF+ +
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 66.3 bits (160), Expect = 4e-11
 Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 34/291 (11%)

Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
             N+++ +    +  +  S       +S     + +   + +V + D+S       +R H
Sbjct: 9   SENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----LLRGH 64

Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLH--LGVSIGTIKTKANVCCVQF 717
           E  + SI FS     LL SGS DG++KLW ++    L+    G+   ++        +  
Sbjct: 65  EDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSK----LALSS 119

Query: 718 PLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAST-DNT 775
           P  +   LA  S D  +  +DL      + TL GH+++V+ + F  D   L S S+ D T
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 776 LKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLS-VWDGYVATGSETNEVFVYHKAFPMP 834
           +KLWDL          PL +  GHT+  + +  S      +A+GS    + ++  +    
Sbjct: 180 IKLWDLR------TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 835 ALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 885
             S    H+D             +SS    G   + L + +S G I++ ++
Sbjct: 234 LRSTLSGHSD-----------SVVSSFSPDG---SLLASGSSDGTIRLWDL 270

Length = 466

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 63.3 bits (155), Expect = 7e-11
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH-RVLPPQLL 292
            Y +PE L G     A DI+ LGV+L+EL     PF   ++       +   +   P   
Sbjct: 161 EYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPE 220

Query: 293 LKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFL 325
                EA      LL  +P  R    E LQ  F 
Sbjct: 221 WDISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLP---PQL 291
           T  Y +PE   G P S  SDI+ LG LL+E+   F+   E  R+M  LR++V     P +
Sbjct: 164 TPHYMAPEVWKGRPYSYKSDIWSLGCLLYEM-ATFAPPFE-ARSMQDLRYKVQRGKYPPI 221

Query: 292 LLKFPKEAS-FCLWLLHPEPSGRPKMGELLQS 322
              + ++   F   +L  +P  RP   ++L S
Sbjct: 222 PPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS 253

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 235 TNWYASPEELAGA-PVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ 290
           T WY +PE L G        D++ LGV+L+EL     PFS   E       L  R+L P 
Sbjct: 161 TPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFS--GENILDQLQLIRRILGPP 218

Query: 291 LLLKFPKE-------ASFCLWLLHPEPSGRPKMGELLQSEFL 325
           L    PK               L+ +PS RP   E+LQ  + 
Sbjct: 219 LEFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.6 bits (127), Expect = 3e-07
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 11/150 (7%)

Query: 563 DLLNSSNLVCSLSFDRDGELFAAAGV-NKKIKVFECDAIINENRDIHYPVVEMASRSKLS 621
            L      V SLSF  DG L  + G  +  I++++            +        S + 
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH--------SNVL 374

Query: 622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD 681
           S+ ++   +   + S  +G V++WD+S   +L  +  H  RV S+DFS  D   LASGS 
Sbjct: 375 SVSFSPDGRVVSSGST-DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSS 432

Query: 682 DGSVKLWSINQAILLLHLGVSIGTIKTKAN 711
           D +++LW +  ++  +        + +K++
Sbjct: 433 DNTIRLWDLKTSLKSVSFSPDGKVLASKSS 462

Length = 466

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 51.7 bits (125), Expect = 5e-07
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 12/95 (12%)

Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL---PPQL 291
           Y SPE     P +  SDI+ LG +L+EL     PF     +   +  L  ++L    P +
Sbjct: 169 YLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPF-----EGENLLELALKILKGQYPPI 223

Query: 292 LLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSEFL 325
             ++  E  +    LL  +P  RP + ++LQS F+
Sbjct: 224 PSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
           ++L  ++ H   V S+ FS  D  LLASGSDDG+V++W 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 180 DLSEASCMQSSSAYGTHVVLVE--GMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNW 237
           DL+  +C+ SS    T VV V   GM  + +LD+    E        FP+K         
Sbjct: 125 DLAARNCLVSS----TGVVKVSDFGMTRY-VLDD----EYTSSSGAKFPVK--------- 166

Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC----PF-STGEEKTRTMSSLRHRVLPPQLL 292
           ++ PE    +  S  SD++  GVL++E+F     PF      +   M S   R+  P+L 
Sbjct: 167 WSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKLA 226

Query: 293 LKFPKEASFCLWLLHPEPSGRPKMGELLQS 322
                E  +  W  H +P GRP   ELL++
Sbjct: 227 SMTVYEVMYSCW--HEKPEGRPTFAELLRA 254

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF---CPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
           Y SPE + G   S A+DI+ LG+ L E      PF    + +     ++     P   L 
Sbjct: 166 YMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPS-FFELMQAICDGPPPSLP 224

Query: 295 FPKEAS--FCLWL---LHPEPSGRPKMGELLQSEFLNE 327
             +E S  F  ++   L  +P  RP   ELLQ  F+ +
Sbjct: 225 -AEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIKK 261

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
           ++L  ++ H   V S+ FS  D   LASGSDDG++KLW 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 745 PLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
            L TL GH   V+ V F  D   L S S D T+++WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLL 262
           ++E  +LD  V+   +       P K   ++ T  Y +PE L G P S ++DIY LGV+L
Sbjct: 165 LEEEDLLDIDVDERNICYSSMTIPGK---IVGTPDYMAPERLLGVPASESTDIYALGVIL 221

Query: 263 FE-LFCPFSTGEEKTRTMSSLRHRVLPPQ 290
           ++ L   F    +K R + S R  +L P 
Sbjct: 222 YQMLTLSFPYRRKKGRKI-SYRDVILSPI 249

Length = 932

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 742 SKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
           S   L TL GH   V+ V F  D   L S S D T+KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL--PP 289
           T  Y SPE L   P   +SD++ LG +++++     PF    E   T   +       PP
Sbjct: 185 TAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEY-LTFQKILKLEYSFPP 243

Query: 290 QLLLKFPKEAS-FCLWLLHPEPSGRP----KMGELLQSEF 324
                FP +A      LL  +P  R        EL    F
Sbjct: 244 ----NFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPF 279

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 227 MKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF----CPFST-GEEKTRTMSS 281
           +KQI +    W A PE L     +  SD++  G+LL+E F     P+     ++TR    
Sbjct: 154 LKQIPI---KWTA-PEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIE 209

Query: 282 LRHRVLPPQLLLKFPKEASFCLWLL--HPEPSGRPKMGELLQS 322
             +R+  PQL      E  + L L     +P  RP   E+   
Sbjct: 210 SGYRMPAPQLC----PEEIYRLMLQCWAYDPENRPSFSEIYNE 248

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMS---SLRHRVLP 288
           T +Y +PE     P S  +D++ LGVLL+EL     PF  GE     M    + R+  LP
Sbjct: 208 TPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFD-GENMEEVMHKTLAGRYDPLP 266

Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELL 320
           P +    P+       LL  +P  RP   +LL
Sbjct: 267 PSI---SPEMQEIVTALLSSDPKRRPSSSKLL 295

Length = 496

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 41.3 bits (95), Expect = 0.002
 Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 17/117 (14%)

Query: 235 TNWYASPEELAG---APVSCASDIYRLGVLLFELFC-----PFSTGEEKTRTMSSLRHRV 286
           T  Y +PE L G   A  S +SDI+ LG+ L+EL               T     +   +
Sbjct: 171 TPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILEL 230

Query: 287 LPPQLLLKFPKE---------ASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEE 334
             P L                +     LL  +P  R      L  + L   +    +
Sbjct: 231 PTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESD 287

Length = 384

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFEL----FCPFSTGEEKTRTMSSLRHRVL--- 287
           T+ Y +PE + G   S  SDI+ LG+ L EL    F P+    +    +  L   ++   
Sbjct: 162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRF-PYPPENDPPDGIFELLQYIVNEP 220

Query: 288 PPQLLL-KFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLN 326
           PP+L   KF  +   F    L  +P  RP   ELL+  F+ 
Sbjct: 221 PPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIK 261

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	886
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.98
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.98
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.97
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.97
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.97
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
KOG0589	426	consensus Serine/threonine protein kinase [General	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.96
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.96
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.96
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.96
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.96
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.96
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
PHA03212	391	serine/threonine kinase US3; Provisional	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.96
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.96
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.96
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.96
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
PHA03209	357	serine/threonine kinase US3; Provisional	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.96
PTZ00036	440	glycogen synthase kinase; Provisional	99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
PTZ00284	467	protein kinase; Provisional	99.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.96
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.96
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.96
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
KOG0584	632	consensus Serine/threonine protein kinase [General	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.96
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.96
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.96
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
PTZ00421	493	coronin; Provisional	99.95
PHA03207	392	serine/threonine kinase US3; Provisional	99.95
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.95
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.95
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.95
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.95
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.95
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.95
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.95
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.95
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.95
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.95
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.95
PHA02988	283	hypothetical protein; Provisional	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.95
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.95
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.95
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.95
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.95
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.95
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.95
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.95
KOG0586	596	consensus Serine/threonine protein kinase [General	99.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.95
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.95
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.95
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.95
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.95
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.95
PHA03210	501	serine/threonine kinase US3; Provisional	99.95
PTZ00420	568	coronin; Provisional	99.94
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.94
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.94
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.94
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.94
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.94
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.94
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.94
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.94
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.94
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.94
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.94
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.94
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.94
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.94
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.94
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.94
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.94
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.94
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.94
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.94
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.94
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.94
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.94
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.94
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.94
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.94
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.94
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.94
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.94
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.94
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.94
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.94
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.94
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.94
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.94
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.94
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.94
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.94
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.94
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.94
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.94
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.94
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.94
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.94
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.94
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.94
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.94
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.94
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.94
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.94
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.94
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.94
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.94
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.94
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.94
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.94
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.94
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.94
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.94
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.94
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.94
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.94
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.93
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.93
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.93
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.93
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.93
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.93
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.93
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.93
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.93
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.93
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.93
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.93
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.93
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.93
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.93
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.93
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.93
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.93
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.93
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.93
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.93
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.93
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.93
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.93
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.93
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.93
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.93
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.93
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.93
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.93
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.93
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.93
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.93
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.93
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.93
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.93
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.93
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.93
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.93
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.93
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.93
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.93
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.93
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.93
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.93
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.93
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.93
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.93
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.93
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.93
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.93
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.93
PLN00009	294	cyclin-dependent kinase A; Provisional	99.93
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.93
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.93
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.93
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.93
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.93
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.93
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.93
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.93
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.93
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.93
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.93
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.93
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.93
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.93
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.93
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.93
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.93
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.93
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.93
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.93
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.93
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.92
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.92
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.92
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.92
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.92
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.92
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.92
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.92
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.92
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.92
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.92
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.92
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.92
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.92
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.92
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.92
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.92
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.92
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.92
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.92
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.92
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.92
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.92
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.92
PHA02882	294	putative serine/threonine kinase; Provisional	99.92
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.92
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.92
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.92
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.92
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.92
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.92
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.92
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.92
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.92
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.92
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.92
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.92
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.92
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.92
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.91
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.91
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.91
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.91
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.91
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.91
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.91
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.91
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.4e-91  Score=851.64  Aligned_cols=741  Identities=71%  Similarity=1.126  Sum_probs=577.0

Q ss_pred             cccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCc
Q 002736           49 ENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESAS  128 (886)
Q Consensus        49 ~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~  128 (886)
                      .++.+.+.++.+|||.+++|++||..+.+.+++.++++|++||+.||+|||++|||||||||+||||+..|.+|++|||+
T Consensus        47 ~~~~~~~~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~  126 (793)
T PLN00181         47 LDGLDDDSIVRALECEDVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESAS  126 (793)
T ss_pred             ccccccchhhhhhccCCccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccc
Confidence            34455578999999999999999977667799999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccc
Q 002736          129 CSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI  208 (886)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (886)
                      +...+.+.                          ...+++.|||.+..........                       .
T Consensus       127 ~~~~~~~~--------------------------~~~~ki~DfG~a~~~~~~~~~~-----------------------~  157 (793)
T PLN00181        127 CSDSGSDE--------------------------DATTKSREIGSSRREEILSERR-----------------------I  157 (793)
T ss_pred             cCcccccc--------------------------cCcccccccccccccccccccc-----------------------h
Confidence            97654321                          1235677887765421100000                       0


Q ss_pred             cccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhcCCCCCchhhHHhHhhccCCCC
Q 002736          209 LDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLP  288 (886)
Q Consensus       209 ~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~pf~~~~~~~~~~~~~~~~~~~  288 (886)
                            ..........++......+||+||||||++.+..|+.++|||||||+||||++|+.+.......+..+.....+
T Consensus       158 ------~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~~~~~  231 (793)
T PLN00181        158 ------EKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLP  231 (793)
T ss_pred             ------hhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHHhhcC
Confidence                  00001112233334455689999999999999999999999999999999999665555444455555555556


Q ss_pred             hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002736          289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEEELLLEFLLLVQQRKQESAKK  368 (886)
Q Consensus       289 ~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~~e~~~~~~~~e~~~~~~~l~~~l~~~~q~k~ee~~~  368 (886)
                      +......+....++.+||+++|.+||++.|+++||||........+++......+...+.+.+.+++...++++++++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  311 (793)
T PLN00181        232 PQILLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEPRENLEEREAAMELRDRIEEQELLLEFLFLIQQRKQEAADK  311 (793)
T ss_pred             hhhhhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhhhHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55555567788999999999999999999999999998765544444444455555566666778887778888999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHhhCCCCcchhcccccCCCCCCCCccccCCCCCcccCcccccccccccccccccCCcc
Q 002736          369 LQDIVSFICSDIEEVSKQQAILRKKGGLGSFAELANDDLSGLNIPSLNIIDNDCSATMGSRKRFRPELQLHHLEECDDNL  448 (886)
Q Consensus       369 lq~~l~~l~~Die~vek~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (886)
                      ++..++.++.||+++++|+......++..                         ......+++.+.+..+...+...+. 
T Consensus       312 ~~~~~~~l~~~i~~~~~r~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-  365 (793)
T PLN00181        312 LQDTISLLSSDIDQVVKRQLVLQQKGSDV-------------------------RSFLASRKRIRQGAETLAAEEENDD-  365 (793)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccc-------------------------ccccccchhhhccccchhhcccccc-
Confidence            99999999999999998665543221110                         1112223333332222111100000 


Q ss_pred             ccccccccCCCcccchhhhhHHHHhHhHHHHHHHhhccCcCCC---CCCCccccccccC-CCCCCCccccccccccccCC
Q 002736          449 DDNQKHNLTGNEERSLFKSSRLMKNFKKLESAYFLTRCRPVKP---SGRPLVRHSQLSS-DGRTSKPLVNERSSINNLGS  524 (886)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~y~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  524 (886)
                         ........+.+.+++++|||.+|+|||+|||.+|++....   ..+++.+..+... +++++     +..+..++..
T Consensus       366 ---~~~~~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  437 (793)
T PLN00181        366 ---NSSKLDDTLESTLLESSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLARYYSALSENGRSS-----EKSSMSNPAK  437 (793)
T ss_pred             ---ccccccccccccchhhhHHHHHHHHHHHHHhhhhhccccccccccccccccccccccccccc-----cccccccccc
Confidence               0000122346677889999999999999999999865332   2334444443333 33322     3334444443


Q ss_pred             cc-cccc-CCcccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccC
Q 002736          525 KE-GYSE-GRRSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN  602 (886)
Q Consensus       525 ~~-~~~~-~~~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~  602 (886)
                      .+ .|.. ....+++.+|.+|++++|++.+.+....++.+++.+|.+.|++++|+|+|++|||||.|++|+||++.....
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~  517 (793)
T PLN00181        438 PPDFYINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK  517 (793)
T ss_pred             cccccccccccccchhhhhhhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc
Confidence            22 3332 234566888999999999999999999998899999999999999999999999999999999999875433


Q ss_pred             cccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCC
Q 002736          603 ENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDD  682 (886)
Q Consensus       603 ~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  682 (886)
                      .....+.+...+.+...|.+++|+++.+.+||+++.||+|+|||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.|
T Consensus       518 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D  597 (793)
T PLN00181        518 DGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD  597 (793)
T ss_pred             cccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence            33344566667777889999999998889999999999999999999999999999999999999997678999999999


Q ss_pred             CcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec
Q 002736          683 GSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV  762 (886)
Q Consensus       683 g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~  762 (886)
                      |+|++||+++       +..+..+.....++++.|++.++.+|++|+.||+|++||+++.+.++..+.+|...|++++|.
T Consensus       598 g~v~iWd~~~-------~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~  670 (793)
T PLN00181        598 GSVKLWSINQ-------GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV  670 (793)
T ss_pred             CEEEEEECCC-------CcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe
Confidence            9999999998       667777777788999999776689999999999999999998876788889999999999999


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCC
Q 002736          763 DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNH  842 (886)
Q Consensus       763 ~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~  842 (886)
                      ++.+|+||+.|++|++||++.........++.++.+|.+.+++++|+|++.+||+|+.|++|++|+...+.++.++.+..
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~  750 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT  750 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence            89999999999999999998643222235688999999999999999999999999999999999999998888888877


Q ss_pred             CCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEeC
Q 002736          843 ADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV  886 (886)
Q Consensus       843 ~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l~  886 (886)
                      ...+.+....++..+|++++|+|++. +|++|+.||+|+||+||
T Consensus       751 ~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~~  793 (793)
T PLN00181        751 IDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEMV  793 (793)
T ss_pred             CCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEecC
Confidence            76666555567788999999999999 99999999999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-44  Score=365.95  Aligned_cols=312  Identities=20%  Similarity=0.308  Sum_probs=272.6

Q ss_pred             cccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      .+..++|..|.++++||..+-.+..+.     .+|.+.|.|++|+|||+.||+|+.||.|.+||..+....      ...
T Consensus       127 g~~l~tGsGD~TvR~WD~~TeTp~~t~-----KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~  195 (480)
T KOG0271|consen  127 GSRLVTGSGDTTVRLWDLDTETPLFTC-----KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRA  195 (480)
T ss_pred             CceEEecCCCceEEeeccCCCCcceee-----cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------ccc
Confidence            345688899999999999998887777     579999999999999999999999999999998764222      122


Q ss_pred             EecCCCCeeeEEEeCC----CCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002736          613 EMASRSKLSSICWNSY----IKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW  688 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~----~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lw  688 (886)
                      ..+|+..|++++|.|.    ...+|||++.||+|+|||+..++++..+.+|+.+|+||.|-  ...++++||.|++|++|
T Consensus       196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw  273 (480)
T KOG0271|consen  196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVW  273 (480)
T ss_pred             ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEE
Confidence            3479999999999874    34689999999999999999999999999999999999997  46799999999999999


Q ss_pred             eCchhhhhhccCceeeeeecC-CCeEEEEEe-----------CC------------------------CCcEEEEEeCCC
Q 002736          689 SINQAILLLHLGVSIGTIKTK-ANVCCVQFP-----------LD------------------------SGRSLAFGSADH  732 (886)
Q Consensus       689 d~~~~~~~~~~~~~~~~~~~~-~~v~~v~~s-----------p~------------------------~~~~l~~gs~Dg  732 (886)
                      +...       +.....+.++ ..|+.++.+           |.                        ++..+++||.|+
T Consensus       274 ~a~d-------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~  346 (480)
T KOG0271|consen  274 RALD-------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF  346 (480)
T ss_pred             Eccc-------hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence            9988       5555555543 456766655           22                        234599999999


Q ss_pred             eEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecC
Q 002736          733 RIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW  811 (886)
Q Consensus       733 ~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  811 (886)
                      ++.+|+-...+.|+..+.+|..-|+.|.|+ |+.++||||-|..|++||.++++      -+.+|+||-..|..|+|+.|
T Consensus       347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk------~lasfRGHv~~VYqvawsaD  420 (480)
T KOG0271|consen  347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK------FLASFRGHVAAVYQVAWSAD  420 (480)
T ss_pred             eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc------hhhhhhhccceeEEEEeccC
Confidence            999999988888999999999999999998 99999999999999999999984      48999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          812 DGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       812 g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                      .++|++||.|.+++||++.+.+...             ...+|...|.+|.|+|||. .+++|+.|..+++|.
T Consensus       421 sRLlVS~SkDsTLKvw~V~tkKl~~-------------DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  421 SRLLVSGSKDSTLKVWDVRTKKLKQ-------------DLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR  479 (480)
T ss_pred             ccEEEEcCCCceEEEEEeeeeeecc-------------cCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence            9999999999999999999876542             3356778899999999999 999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-42  Score=352.39  Aligned_cols=286  Identities=24%  Similarity=0.401  Sum_probs=253.6

Q ss_pred             CcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccce-EEecCCCCeeeEEEeCCCCCeEEEecCCC
Q 002736          562 GDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPV-VEMASRSKLSSICWNSYIKSQIASSNFEG  640 (886)
Q Consensus       562 ~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~-~~~~~~~~I~~l~~~~~~~~~las~s~Dg  640 (886)
                      ..+.+|.++|.|+.|+|+|..||||+.|.++++||+.+.        .|. ..-+|...|.||+|+| ++..||||+.||
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--------Tp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg  179 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--------TPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDG  179 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--------CcceeecCCccEEEEEEECC-CcchhhccccCC
Confidence            557899999999999999999999999999999999873        222 3346999999999999 799999999999


Q ss_pred             cEEEEECCCceE-EEEecccCCcEEEEEEccC----CCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEE
Q 002736          641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSA----DPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCC  714 (886)
Q Consensus       641 ~V~iWd~~t~~~-~~~~~~h~~~v~~v~~~p~----~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~  714 (886)
                      +|++||..+++. .+.+.+|.+.|++++|.|-    ...+||+++.||+|+|||+..       +.++..+. |...|+|
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-------~~~~~~lsgHT~~VTC  252 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-------GTCVRTLSGHTASVTC  252 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-------ceEEEEeccCccceEE
Confidence            999999999875 4778999999999999863    457999999999999999998       66766665 5678999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec------------CC------------------
Q 002736          715 VQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV------------DA------------------  764 (886)
Q Consensus       715 v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~------------~~------------------  764 (886)
                      |.|--+  .++++||.|++|++|+...+.. ...++||...|+.++.+            .+                  
T Consensus       253 vrwGG~--gliySgS~DrtIkvw~a~dG~~-~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  253 VRWGGE--GLIYSGSQDRTIKVWRALDGKL-CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             EEEcCC--ceEEecCCCceEEEEEccchhH-HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            999754  5899999999999999988774 88899999999988764            12                  


Q ss_pred             -------CEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCccee
Q 002736          765 -------TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALS  837 (886)
Q Consensus       765 -------~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~  837 (886)
                             +.|+|||.|+++.+|+-...+     +|+....||+..|+.|.||||++|||++|-|..|++|+-.+++.+.+
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las  404 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS  404 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh
Confidence                   349999999999999987664     67889999999999999999999999999999999999999998866


Q ss_pred             eccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          838 FNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       838 ~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      |+             +|-+.|..|+|+.|++ +|++++.|.++|||++
T Consensus       405 fR-------------GHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  405 FR-------------GHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDV  438 (480)
T ss_pred             hh-------------hccceeEEEEeccCcc-EEEEcCCCceEEEEEe
Confidence            53             5778899999999999 9999999999999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-42  Score=355.66  Aligned_cols=284  Identities=23%  Similarity=0.336  Sum_probs=257.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCC-CCCeEEEecCCCcEE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSY-IKSQIASSNFEGVVQ  643 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~-~~~~las~s~Dg~V~  643 (886)
                      .+...+|..+.|++|+..||||+.+|.+|||+..+.       .......+|.+.|.++.|+|. +...+|||+.||+|+
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk  244 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK  244 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence            566889999999999999999999999999998763       233456689999999999997 467999999999999


Q ss_pred             EEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCc
Q 002736          644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGR  723 (886)
Q Consensus       644 iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  723 (886)
                      +|++.+...+..+.+|..+|..+.|+| +|.+|+|+|.|.+-+|||+++.....      ..-.|...|.+++|+|+ |.
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL------~QEGHs~~v~~iaf~~D-GS  316 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELL------LQEGHSKGVFSIAFQPD-GS  316 (459)
T ss_pred             eeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhH------hhcccccccceeEecCC-Cc
Confidence            999999999999999999999999999 99999999999999999999953322      22345678999999999 99


Q ss_pred             EEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCc
Q 002736          724 SLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV  802 (886)
Q Consensus       724 ~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~  802 (886)
                      ++++|+.|..-+|||+|++++ +..+.+|.++|.+|.|+ +|..|||||.|++++|||++..      .++.++.+|++.
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nl  389 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------SELYTIPAHSNL  389 (459)
T ss_pred             eeeccCccchhheeecccCcE-EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc------ccceecccccch
Confidence            999999999999999999996 99999999999999997 9999999999999999999987      458999999999


Q ss_pred             eeEEEEec-CCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEE
Q 002736          803 KNFVGLSV-WDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIK  881 (886)
Q Consensus       803 v~~v~~sp-~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~  881 (886)
                      |..|.|+| .|.+|+|+|.|++++||...+..++.++             -+|.+.|.+|+.++++. .++|++.|.+||
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-------------aGHe~kV~s~Dis~d~~-~i~t~s~DRT~K  455 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-------------AGHEGKVISLDISPDSQ-AIATSSFDRTIK  455 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhh-------------cCCccceEEEEeccCCc-eEEEeccCceee
Confidence            99999999 5789999999999999999988877544             45778899999999999 999999999999


Q ss_pred             EEE
Q 002736          882 ILE  884 (886)
Q Consensus       882 iw~  884 (886)
                      +|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.8e-40  Score=335.98  Aligned_cols=264  Identities=25%  Similarity=0.359  Sum_probs=241.9

Q ss_pred             cccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcCcccCcccccccce-
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRD--GELFAAAGVNKKIKVFECDAIINENRDIHYPV-  611 (886)
Q Consensus       535 ~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d--~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~-  611 (886)
                      -+++|+.+|.+|+|+..+.....+|     .+|...|.++.|+|.  +..+|||+.||++++|+++..        .++ 
T Consensus       189 ~laT~swsG~~kvW~~~~~~~~~~l-----~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--------~~l~  255 (459)
T KOG0272|consen  189 HLATGSWSGLVKVWSVPQCNLLQTL-----RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--------TPLQ  255 (459)
T ss_pred             eEEEeecCCceeEeecCCcceeEEE-----eccccceeeEEEccCCCccceeeeccCCceeeeccCCC--------cchh
Confidence            3578899999999999998777776     689999999999996  669999999999999999862        122 


Q ss_pred             EEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCc
Q 002736          612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN  691 (886)
Q Consensus       612 ~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~  691 (886)
                      ...+|...|..++|+| ++.+|+|+++|.+-++||+++++.+...++|...|.+++|.| +|.+++||+.|..-+|||++
T Consensus       256 ~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR  333 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR  333 (459)
T ss_pred             hhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecc
Confidence            2235888999999999 799999999999999999999998888899999999999998 99999999999999999999


Q ss_pred             hhhhhhccCceeeeeec-CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEE
Q 002736          692 QAILLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLV  768 (886)
Q Consensus       692 ~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~  768 (886)
                      +       +.++..+.. ...|.+|+|+|+ |..||+||.|++++|||+|..+. +.++.+|..-|+.|+|.  .|.+|+
T Consensus       334 t-------gr~im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~  404 (459)
T KOG0272|consen  334 T-------GRCIMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLV  404 (459)
T ss_pred             c-------CcEEEEecccccceeeEeECCC-ceEEeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEE
Confidence            9       777777764 567999999999 99999999999999999998885 99999999999999997  788999


Q ss_pred             EEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEe
Q 002736          769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       769 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd  828 (886)
                      |+|.|++++||...+.      .|++++.||.+.|.++++++++++|+|+|.|+++++|.
T Consensus       405 TasyD~t~kiWs~~~~------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  405 TASYDNTVKIWSTRTW------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EcccCcceeeecCCCc------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999988      67999999999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-37  Score=298.62  Aligned_cols=297  Identities=22%  Similarity=0.356  Sum_probs=250.5

Q ss_pred             CcccCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCcccCcccccccce-EEecCCCCeeeEEEeCCCCCeEEEecCC
Q 002736          562 GDLLNSSNLVCSLSFDRD-GELFAAAGVNKKIKVFECDAIINENRDIHYPV-VEMASRSKLSSICWNSYIKSQIASSNFE  639 (886)
Q Consensus       562 ~~~~~h~~~V~sl~f~~d-~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~-~~~~~~~~I~~l~~~~~~~~~las~s~D  639 (886)
                      +.+.+|.+.|+.++..+. .+.+.+++.|++|.+|++.....   ....++ ...+|..-|+.+..++ ++++.+|+++|
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~---~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD   84 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI---KYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWD   84 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---ccCceeeeeeccceEecceEEcc-CCceEEecccc
Confidence            556889999999999986 67899999999999999987411   222233 3345888899999998 79999999999


Q ss_pred             CcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-c--CCCeEEEE
Q 002736          640 GVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-T--KANVCCVQ  716 (886)
Q Consensus       640 g~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~--~~~v~~v~  716 (886)
                      +++++||+.+++..+.|.+|...|.+++|+| +..++++|+.|.+|++||+..        .+..++. .  ...|.||.
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g--------~ck~t~~~~~~~~WVscvr  155 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG--------VCKYTIHEDSHREWVSCVR  155 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc--------cEEEEEecCCCcCcEEEEE
Confidence            9999999999999999999999999999998 899999999999999999985        3333333 2  56799999


Q ss_pred             EeCCC-CcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCce
Q 002736          717 FPLDS-GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLH  794 (886)
Q Consensus       717 ~sp~~-~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  794 (886)
                      |+|.. .-+|+++|.|++|++||+++.+. ...+.||.+.++.+.++ ||..+++|+.||.+.+||++.++      .+.
T Consensus       156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k------~ly  228 (315)
T KOG0279|consen  156 FSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK------NLY  228 (315)
T ss_pred             EcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc------eeE
Confidence            99984 46899999999999999999885 78899999999999998 99999999999999999999884      355


Q ss_pred             EeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEE
Q 002736          795 SFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAA  874 (886)
Q Consensus       795 ~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~  874 (886)
                      ++ +|...|++++|+|+.-+|+.+ .+..|+|||+.++..+..++..-..+    ......-...+++|+++|. .|++|
T Consensus       229 sl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~----s~~~~~~~clslaws~dG~-tLf~g  301 (315)
T KOG0279|consen  229 SL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP----SSKAGDPICLSLAWSADGQ-TLFAG  301 (315)
T ss_pred             ec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc----ccccCCcEEEEEEEcCCCc-EEEee
Confidence            55 588899999999986555554 45569999999999988877654332    1222344578899999999 99999


Q ss_pred             eCCCCEEEEEe
Q 002736          875 NSSGNIKILEM  885 (886)
Q Consensus       875 ~~dg~I~iw~l  885 (886)
                      -.|+.|++|++
T Consensus       302 ~td~~irv~qv  312 (315)
T KOG0279|consen  302 YTDNVIRVWQV  312 (315)
T ss_pred             ecCCcEEEEEe
Confidence            99999999986

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.3e-40  Score=339.94  Aligned_cols=208  Identities=21%  Similarity=0.229  Sum_probs=169.6

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ++.-.+-..+||++|.... +.   ...+..|+|||| .||+|.+++-.+ ..+.+..++.+|+||+.||.|||++||+|
T Consensus       225 ~EieILkkL~HP~IV~~~d-~f---~~~ds~YmVlE~v~GGeLfd~vv~n-k~l~ed~~K~~f~Qll~avkYLH~~GI~H  299 (475)
T KOG0615|consen  225 NEIEILKKLSHPNIVRIKD-FF---EVPDSSYMVLEYVEGGELFDKVVAN-KYLREDLGKLLFKQLLTAVKYLHSQGIIH  299 (475)
T ss_pred             HHHHHHHhcCCCCEEEEee-ee---ecCCceEEEEEEecCccHHHHHHhc-cccccchhHHHHHHHHHHHHHHHHcCccc
Confidence            3444556678888887666 33   245667999999 999999999554 57899999999999999999999999999


Q ss_pred             cccCCcceeeccC---CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          106 HNVRPSCFVMSSF---NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       106 rDlkP~NIll~~~---~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |||||+|||+..+   -.+||+|||+|+..+..+                                              
T Consensus       300 RDiKPeNILl~~~~e~~llKItDFGlAK~~g~~s----------------------------------------------  333 (475)
T KOG0615|consen  300 RDIKPENILLSNDAEDCLLKITDFGLAKVSGEGS----------------------------------------------  333 (475)
T ss_pred             ccCCcceEEeccCCcceEEEecccchhhccccce----------------------------------------------
Confidence            9999999999765   679999999997765332                                              


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC---CCcccccchHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP---VSCASDIYRLG  259 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~---~s~~sDIwSlG  259 (886)
                                                                   .+.++||||.|.|||++.+..   +..++||||||
T Consensus       334 ---------------------------------------------fm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlG  368 (475)
T KOG0615|consen  334 ---------------------------------------------FMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLG  368 (475)
T ss_pred             ---------------------------------------------ehhhhcCCccccChhheecCCeecccchheeeecc
Confidence                                                         223459999999999998755   34488999999


Q ss_pred             HHHHHHhc---CCCCCchhhHHhHhhcc---CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSLRH---RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       260 vil~eLl~---pf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      |+||-+|+   ||............+..   .+.|+.|...+.+..+||.+||..||+.|||+.|+|+||||+..+.
T Consensus       369 cvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~~  445 (475)
T KOG0615|consen  369 CVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFKDAPC  445 (475)
T ss_pred             ceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhcccc
Confidence            99999999   77655554434444433   3457888888999999999999999999999999999999997653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.8e-36  Score=296.70  Aligned_cols=282  Identities=16%  Similarity=0.238  Sum_probs=247.9

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQV  644 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~i  644 (886)
                      .+|.+.|.++.|++|.+++++++.||++.|||.-+..+.+.       ..-....|..++|+| +++.+|+|+.|+.+.|
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha-------ipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA-------IPLPSSWVMTCAYSP-SGNFVACGGLDNKCSI  123 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE-------EecCceeEEEEEECC-CCCeEEecCcCceeEE
Confidence            68999999999999999999999999999999877543332       112457899999999 7999999999999999


Q ss_pred             EECCCc------eEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEE
Q 002736          645 WDVSRS------QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQF  717 (886)
Q Consensus       645 Wd~~t~------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~  717 (886)
                      |++.+.      +..+++.+|++-+.|+.|.  +..+|+++|.|.++.+||+++       +..+..+. |.+.|.++++
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~--dD~~ilT~SGD~TCalWDie~-------g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFL--DDNHILTGSGDMTCALWDIET-------GQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEc--CCCceEecCCCceEEEEEccc-------ceEEEEecCCcccEEEEec
Confidence            999865      4567889999999999998  467999999999999999999       77777666 4577999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEe
Q 002736          718 PLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF  796 (886)
Q Consensus       718 sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  796 (886)
                      +|.+++.|++|+.|++.++||+|.+. .+.+|.+|...|++|+|. +|.-++|||.|+++++||++....      +..+
T Consensus       195 ~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~------~a~y  267 (343)
T KOG0286|consen  195 SPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE------LAVY  267 (343)
T ss_pred             CCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE------Eeee
Confidence            99559999999999999999999997 599999999999999996 999999999999999999998743      4555


Q ss_pred             e--cCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEE
Q 002736          797 T--GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAA  874 (886)
Q Consensus       797 ~--~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~  874 (886)
                      .  .-..+|++|+||..|++|.+|..|.++.+||.-.++.+..+             .+|...|+++..+|||. .|+||
T Consensus       268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-------------~GHeNRvScl~~s~DG~-av~Tg  333 (343)
T KOG0286|consen  268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-------------AGHENRVSCLGVSPDGM-AVATG  333 (343)
T ss_pred             ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-------------eccCCeeEEEEECCCCc-EEEec
Confidence            4  23457999999999999999999999999998887766433             36778899999999999 99999


Q ss_pred             eCCCCEEEEE
Q 002736          875 NSSGNIKILE  884 (886)
Q Consensus       875 ~~dg~I~iw~  884 (886)
                      +.|.++|||.
T Consensus       334 SWDs~lriW~  343 (343)
T KOG0286|consen  334 SWDSTLRIWA  343 (343)
T ss_pred             chhHheeecC
Confidence            9999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.6e-36  Score=295.92  Aligned_cols=291  Identities=24%  Similarity=0.320  Sum_probs=254.0

Q ss_pred             CcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCc
Q 002736          562 GDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGV  641 (886)
Q Consensus       562 ~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~  641 (886)
                      -.+.+|.+.|+.+.|+|+|.+|||||.|..|.+|+.......      ....-+|.+.|..+.|.+ +++.|+|++.|.+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVMELHGMR-DGSHILSCGTDKT  113 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------eeeeccccceeEeeeecc-CCCEEEEecCCce
Confidence            345789999999999999999999999999999996542111      112237999999999998 7999999999999


Q ss_pred             EEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCC
Q 002736          642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDS  721 (886)
Q Consensus       642 V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  721 (886)
                      |+.||+++|++.+.+++|.+-|++++-+.....++.+|++||+++|||+++       ...++++..+.++++|.|... 
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-------k~~~~t~~~kyqltAv~f~d~-  185 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-------KEAIKTFENKYQLTAVGFKDT-  185 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-------cchhhccccceeEEEEEeccc-
Confidence            999999999999999999999999986655678999999999999999999       788888888899999999988 


Q ss_pred             CcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCC
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT  800 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~  800 (886)
                      +..+.+|+-|+.|++||+|+... ++++.||.++|+.+..+ +|..+.|-+.|.++++||++-....  .+++..+.||.
T Consensus       186 s~qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~  262 (338)
T KOG0265|consen  186 SDQVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHI  262 (338)
T ss_pred             ccceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC--CceEEEeecch
Confidence            78899999999999999999885 99999999999999997 9999999999999999999865431  24578888875


Q ss_pred             Cc----eeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeC
Q 002736          801 NV----KNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANS  876 (886)
Q Consensus       801 ~~----v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~  876 (886)
                      ..    ...++|+|++.++.+|+.|..+++||......+..             ..+|.+.|++++|+|..+ +|.++++
T Consensus       263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk-------------lpGh~gsvn~~~Fhp~e~-iils~~s  328 (338)
T KOG0265|consen  263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK-------------LPGHYGSVNEVDFHPTEP-IILSCSS  328 (338)
T ss_pred             hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEE-------------cCCcceeEEEeeecCCCc-EEEEecc
Confidence            42    35578999999999999999999999887655532             356778899999999999 9999999


Q ss_pred             CCCEEEEE
Q 002736          877 SGNIKILE  884 (886)
Q Consensus       877 dg~I~iw~  884 (886)
                      |.+|.+=+
T Consensus       329 dk~i~lge  336 (338)
T KOG0265|consen  329 DKTIYLGE  336 (338)
T ss_pred             CceeEeec
Confidence            99998643

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-38  Score=325.82  Aligned_cols=208  Identities=21%  Similarity=0.237  Sum_probs=174.3

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCee
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIV  104 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~gii  104 (886)
                      +++..+-.-+++.+|++|+ ++.++..  ...|+||| +||||.+++++. +.+++...-.|+++|+.||.|||. ++||
T Consensus       126 rEl~il~~~~spyIV~~yg-aF~~~~~--~isI~mEYMDgGSLd~~~k~~-g~i~E~~L~~ia~~VL~GL~YLh~~~~II  201 (364)
T KOG0581|consen  126 RELEILRSCQSPYIVGFYG-AFYSNGE--EISICMEYMDGGSLDDILKRV-GRIPEPVLGKIARAVLRGLSYLHEERKII  201 (364)
T ss_pred             HHHHHHhhCCCCCeeeEeE-EEEeCCc--eEEeehhhcCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhhccCee
Confidence            4555556669999999888 5544322  68999999 999999999655 678999999999999999999995 9999


Q ss_pred             ecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      ||||||+|||++..|+|||||||++..+...                                                 
T Consensus       202 HRDIKPsNlLvNskGeVKicDFGVS~~lvnS-------------------------------------------------  232 (364)
T KOG0581|consen  202 HRDIKPSNLLVNSKGEVKICDFGVSGILVNS-------------------------------------------------  232 (364)
T ss_pred             eccCCHHHeeeccCCCEEeccccccHHhhhh-------------------------------------------------
Confidence            9999999999999999999999998543211                                                 


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHH
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~e  264 (886)
                                                                 ...+.+||..|||||.+.+..|+.++||||||+.++|
T Consensus       233 -------------------------------------------~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE  269 (364)
T KOG0581|consen  233 -------------------------------------------IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLE  269 (364)
T ss_pred             -------------------------------------------hcccccccccccChhhhcCCcCCcccceecccHHHHH
Confidence                                                       0122499999999999999999999999999999999


Q ss_pred             Hhc---CCCCC----chhhHHhHhhccCCCChhhhc-cChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          265 LFC---PFSTG----EEKTRTMSSLRHRVLPPQLLL-KFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       265 Ll~---pf~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      +..   ||...    ......+..+.....|..+.. .++++.+|+..||++||.+||++.|+++|||+.....
T Consensus       270 ~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~~  343 (364)
T KOG0581|consen  270 LAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKKFED  343 (364)
T ss_pred             HhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhhccc
Confidence            999   66543    355566677776666666665 7899999999999999999999999999999987644

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.8e-37  Score=312.04  Aligned_cols=280  Identities=18%  Similarity=0.315  Sum_probs=242.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEEC
Q 002736          568 SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDV  647 (886)
Q Consensus       568 ~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~  647 (886)
                      +-+|..+.|.|+|+.|+||+..|.+.+|+....       .......+|.++|+++.|++ ++..++||+.+|.|++|+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqp  167 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQP  167 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEeccc
Confidence            458999999999999999999999999997542       22223457999999999998 7999999999999999998


Q ss_pred             CCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEE
Q 002736          648 SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLA  726 (886)
Q Consensus       648 ~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~  726 (886)
                      .-..+......|...|.+++|+| +...|++||+||+|+|||....       .....+. +...|.|++|+|. ..+||
T Consensus       168 nmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~-------kee~vL~GHgwdVksvdWHP~-kgLia  238 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMP-------KEERVLRGHGWDVKSVDWHPT-KGLIA  238 (464)
T ss_pred             chhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCC-------chhheeccCCCCcceeccCCc-cceeE
Confidence            65444333334559999999999 8899999999999999999884       3333334 4567999999999 78999


Q ss_pred             EEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeE
Q 002736          727 FGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF  805 (886)
Q Consensus       727 ~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~  805 (886)
                      +||.|+.|++||.|++.+ +.++.+|+..|..++|. ++++|+|+|.|..++++|+++.      +.++++++|+..+++
T Consensus       239 sgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTS  311 (464)
T ss_pred             EccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------HHHHHhhcchhhhee
Confidence            999999999999999985 99999999999999997 8899999999999999999976      448999999999999


Q ss_pred             EEEecCC-CEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          806 VGLSVWD-GYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       806 v~~sp~g-~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                      ++|+|-. .++++|+.||.|..|.+...+|+..+.            .+|...|++++|+|-|. +|++|+.|.++++|.
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------------~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------------PAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWT  378 (464)
T ss_pred             eccccccccceeeccCCCceEEEeccccccccCCC------------cccccceeeeeccccce-eEeecCCCcceeeec
Confidence            9999975 589999999999999998766664332            45777899999999999 999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.7e-35  Score=303.57  Aligned_cols=309  Identities=22%  Similarity=0.341  Sum_probs=264.4

Q ss_pred             ccccccccceEEeeecC----ceEEEEecc-----CcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccc
Q 002736          536 WINPFLEGLCKYLSFSK----LRVKADLNQ-----GDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRD  606 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~----~~~~~~l~~-----~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~  606 (886)
                      +..|..+-..++|++..    +.....|++     +.-......|++++|+.+|.+||||..||.++||+......    
T Consensus       194 lasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~----  269 (524)
T KOG0273|consen  194 LASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI----  269 (524)
T ss_pred             hhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh----
Confidence            45566777888888763    222223332     12223457899999999999999999999999999876321    


Q ss_pred             cccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEE
Q 002736          607 IHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVK  686 (886)
Q Consensus       607 ~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~  686 (886)
                          ...-.|+++|.+|.|+. .+++|++++-||++.+||..+++....+.-|..+..+|+|-  +...|++++.|+.|+
T Consensus       270 ----~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~  342 (524)
T KOG0273|consen  270 ----STLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIH  342 (524)
T ss_pred             ----hhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEE
Confidence                12335999999999998 79999999999999999999999999999999998899997  678999999999999


Q ss_pred             EEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec---
Q 002736          687 LWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV---  762 (886)
Q Consensus       687 lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~---  762 (886)
                      |+-+..       ..++.++. |+..|.++.|+|. +.+|+++|.|+++++|...+... ...+.+|.+.|+.+.|+   
T Consensus       343 V~kv~~-------~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g  413 (524)
T KOG0273|consen  343 VCKVGE-------DRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTG  413 (524)
T ss_pred             EEEecC-------CCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCC
Confidence            999987       66666655 5678999999999 99999999999999999887764 88899999999999995   


Q ss_pred             -------CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcc
Q 002736          763 -------DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA  835 (886)
Q Consensus       763 -------~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~  835 (886)
                             .+..|++++.|++|++||+..+      .|+++|..|+.+|.+|+|||+|+|+|+|+.||.|.||++.+++..
T Consensus       414 ~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  414 PVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV  487 (524)
T ss_pred             CccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence                   3458999999999999999998      569999999999999999999999999999999999999999887


Q ss_pred             eeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          836 LSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       836 ~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      .++.-              ...|+.|||+.+|+ .|.++-+||.+++.++
T Consensus       488 ~s~~~--------------~~~Ifel~Wn~~G~-kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  488 KSYQG--------------TGGIFELCWNAAGD-KLGACASDGSVCVLDL  522 (524)
T ss_pred             EeecC--------------CCeEEEEEEcCCCC-EEEEEecCCCceEEEe
Confidence            66541              23499999999999 9999999999999987

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.5e-35  Score=286.70  Aligned_cols=273  Identities=21%  Similarity=0.284  Sum_probs=235.5

Q ss_pred             cccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      .+..+++++||.+-+||.-|.....-+     .-.+..|-.++|+|.|+++|.||.|+...||++.....+.. ......
T Consensus        67 sr~ivSaSqDGklIvWDs~TtnK~hai-----pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~-~~v~r~  140 (343)
T KOG0286|consen   67 SRRIVSASQDGKLIVWDSFTTNKVHAI-----PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN-VRVSRE  140 (343)
T ss_pred             cCeEEeeccCCeEEEEEcccccceeEE-----ecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc-ceeeee
Confidence            345688999999999996553333222     23577999999999999999999999999999985322211 111223


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      ..+|.+-++|+.|-.  .++|+++|.|.++.+||+++++.+..|.+|.+.|.+++++|.+++.+++|+.|++.+|||++.
T Consensus       141 l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             ecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            567999999999986  788999999999999999999999999999999999999998999999999999999999999


Q ss_pred             hhhhhccCceeeeeec-CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEec--CCCCeEEEEec-CCCEEE
Q 002736          693 AILLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIG--HNKTVSYVKFV-DATTLV  768 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~--h~~~V~~v~f~-~~~~l~  768 (886)
                             +..++++.. ...|++|+|.|+ |.-|++||.|+++++||+|..+. +..+..  -..+|++|+|+ .|++|+
T Consensus       219 -------~~c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  219 -------GQCVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             -------cceeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEEEcccccEEE
Confidence                   888888875 567999999999 89999999999999999998874 666652  34679999998 999999


Q ss_pred             EEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEe
Q 002736          769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       769 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd  828 (886)
                      +|..|.++.+||.-.+      +.+..+.||.+.|.++..+|||.-++|||.|.+++||.
T Consensus       290 agy~d~~c~vWDtlk~------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  290 AGYDDFTCNVWDTLKG------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeecCCceeEeecccc------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999877      44788999999999999999999999999999999993

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.4e-34  Score=276.86  Aligned_cols=275  Identities=17%  Similarity=0.271  Sum_probs=236.8

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEE-ec
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE-MA  615 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~-~~  615 (886)
                      +++..|-+|++|...+|++..++.     +..+.|..++..||+..||+|+. -.|++||+.+..      ..|+.. .+
T Consensus        14 vsA~YDhTIRfWqa~tG~C~rTiq-----h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n------p~Pv~t~e~   81 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALTGICSRTIQ-----HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN------PNPVATFEG   81 (311)
T ss_pred             EeccCcceeeeeehhcCeEEEEEe-----cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC------CCceeEEec
Confidence            678899999999999999998885     34678999999999999999887 799999998731      224443 45


Q ss_pred             CCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhh
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       616 ~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~  695 (886)
                      |...|..|.|.. ++..++||+.||+|+|||++...+.+.|+ |..+|++|..+| +...|++|..+|.|++||+.....
T Consensus        82 h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   82 HTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             cCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcc
Confidence            789999999997 79999999999999999999977777765 789999999999 888999999999999999988422


Q ss_pred             hhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC-----cceEEEecCCCCeEEEEec-CCCEEE
Q 002736          696 LLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK-----IPLCTLIGHNKTVSYVKFV-DATTLV  768 (886)
Q Consensus       696 ~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~-----~~~~~~~~h~~~V~~v~f~-~~~~l~  768 (886)
                      ..      ..++ ....|.++...|+ |..++.+..-|++++|++-+..     .|+..++.|+..+..+.++ ++++||
T Consensus       159 ~~------~liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  159 TH------ELIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             cc------ccCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence            11      1111 2356999999999 8999999999999999987643     3678899999999999997 999999


Q ss_pred             EEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceee
Q 002736          769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSF  838 (886)
Q Consensus       769 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~  838 (886)
                      |+|.|.+++||++...     .....++++|+.+++.++||.+|+||+|||.|+.+++|++..++.+..+
T Consensus       232 t~ssdktv~iwn~~~~-----~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDF-----FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             eecCCceEEEEecCCc-----eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence            9999999999999876     1446789999999999999999999999999999999999998877544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.4e-34  Score=275.86  Aligned_cols=275  Identities=17%  Similarity=0.264  Sum_probs=234.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCce--EEEEec
Q 002736          580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ--VLTEMR  657 (886)
Q Consensus       580 ~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~--~~~~~~  657 (886)
                      .-+||++|.|-+|++|...++....       ......+.|+.+...| ++..||+++ .-.|++||++++.  ++..|.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~r-------Tiqh~dsqVNrLeiTp-dk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e   80 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSR-------TIQHPDSQVNRLEITP-DKKDLAAAG-NQHVRLYDLNSNNPNPVATFE   80 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEE-------EEecCccceeeEEEcC-Ccchhhhcc-CCeeEEEEccCCCCCceeEEe
Confidence            3589999999999999988753321       2223467899999999 688888887 5689999999875  689999


Q ss_pred             ccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 002736          658 EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYY  737 (886)
Q Consensus       658 ~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vw  737 (886)
                      +|.+.|++|.|.. ++.++++|++||+++|||++.       ......+.+.++|++|..+|+ ...|++|..+|.|++|
T Consensus        81 ~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~-------~~~qR~~~~~spVn~vvlhpn-QteLis~dqsg~irvW  151 (311)
T KOG0315|consen   81 GHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRS-------LSCQRNYQHNSPVNTVVLHPN-QTELISGDQSGNIRVW  151 (311)
T ss_pred             ccCCceEEEEEee-cCeEEEecCCCceEEEEeccC-------cccchhccCCCCcceEEecCC-cceEEeecCCCcEEEE
Confidence            9999999999996 999999999999999999999       566667788899999999999 6789999999999999


Q ss_pred             ecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEE
Q 002736          738 DLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVA  816 (886)
Q Consensus       738 Dlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~la  816 (886)
                      |+++....-..+.....+|.++... +|.+|+.+..-|++.+|++-.........|+..++.|...+..+-+||+++|||
T Consensus       152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence            9998754222333455678888885 999999999999999999988666666788999999999999999999999999


Q ss_pred             EEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          817 TGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       817 sgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      ++|.|.+++||..... ...+           ....+|..+|+.++||.||. +|+||++|+.+++|++
T Consensus       232 t~ssdktv~iwn~~~~-~kle-----------~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDF-FKLE-----------LVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDL  287 (311)
T ss_pred             eecCCceEEEEecCCc-eeeE-----------EEeecCCceEEeeeeccCcc-EEEecCCCCceeeccc
Confidence            9999999999998864 1111           23366788999999999999 9999999999999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-34  Score=320.13  Aligned_cols=290  Identities=18%  Similarity=0.297  Sum_probs=238.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcc----------cC--------------cccccccceEEecCCCCeee
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAI----------IN--------------ENRDIHYPVVEMASRSKLSS  622 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~----------~~--------------~~~~~~~~~~~~~~~~~I~~  622 (886)
                      ....|+|+.|++|+.++|.|-.|..|++|.+...          ..              ............+|.++|..
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            3558999999999999999999999999998730          00              00011122336789999999


Q ss_pred             EEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCce
Q 002736          623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVS  702 (886)
Q Consensus       623 l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~  702 (886)
                      +.|+| +..+|+|||.|++|++|.+.+..++..+++|..+||++.|+| .|-+|||||.|++.+||....       ..+
T Consensus       457 ~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~-------~~P  527 (707)
T KOG0263|consen  457 CSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH-------NKP  527 (707)
T ss_pred             eeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeeccc-------CCc
Confidence            99999 799999999999999999999999999999999999999999 899999999999999999887       344


Q ss_pred             eeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEe
Q 002736          703 IGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD  780 (886)
Q Consensus       703 ~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd  780 (886)
                      ...+. |-+.|.|++|+|+ .+++++||.|.+|++||+.++.. ++.|.||..+|.+++|+ +|.+|+||+.||.|++||
T Consensus       528 lRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD  605 (707)
T ss_pred             hhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence            44443 4577999999999 89999999999999999999985 99999999999999998 999999999999999999


Q ss_pred             CCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcc-----eeeccCCC------CCCCCC
Q 002736          781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA-----LSFNFNHA------DPLSGP  849 (886)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~-----~~~~~~~~------~~~~~~  849 (886)
                      +.++      .++..+.+|++.|.++.||.+|..||+||.|++|++||+......     .+......      +...-.
T Consensus       606 l~~~------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llg  679 (707)
T KOG0263|consen  606 LANG------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLG  679 (707)
T ss_pred             cCCC------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceee
Confidence            9998      568999999999999999999999999999999999998764333     00010000      000001


Q ss_pred             ccccCCCcEEEEEEccCCCcEEEEE
Q 002736          850 ETDDAAQFISSVCWRGQSSNTLVAA  874 (886)
Q Consensus       850 ~~~~~~~~V~~v~~s~~~~~~l~s~  874 (886)
                      .+..-..+|..|.|...+- .|++|
T Consensus       680 s~~tK~tpv~~l~FtrrNl-~L~~g  703 (707)
T KOG0263|consen  680 SFYTKNTPVVGLHFTRRNL-LLAVG  703 (707)
T ss_pred             eeeecCceEEEEEEeccce-eEEec
Confidence            1234456788888877654 45444

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-37  Score=321.81  Aligned_cols=209  Identities=20%  Similarity=0.290  Sum_probs=171.1

Q ss_pred             cCceeecccc-cccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           27 SDGVELTHGD-HLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        27 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      |+...+...| |+|+|.++. +..+.  ...+|++|||..-+|.++|+.+++.|++..++.|+.||++||+|+|.+|+.|
T Consensus        57 REvksL~kln~hpniikL~E-vi~d~--~~~L~fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFH  133 (538)
T KOG0661|consen   57 REVKSLRKLNPHPNIIKLKE-VIRDN--DRILYFVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFH  133 (538)
T ss_pred             HHHHHHHhcCCCCcchhhHH-Hhhcc--CceEeeeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            4445566677 999999888 44332  2289999999999999999888899999999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||+.....|||+|||+|+...+..                                                 
T Consensus       134 RDlKPENiLi~~~~~iKiaDFGLARev~Skp-------------------------------------------------  164 (538)
T KOG0661|consen  134 RDLKPENILISGNDVIKIADFGLAREVRSKP-------------------------------------------------  164 (538)
T ss_pred             ccCChhheEecccceeEecccccccccccCC-------------------------------------------------
Confidence            9999999999988899999999997653221                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFE  264 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~e  264 (886)
                                                                ..|.++-|.||+|||++.... |+.+.|||++|||++|
T Consensus       165 ------------------------------------------PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aE  202 (538)
T KOG0661|consen  165 ------------------------------------------PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAE  202 (538)
T ss_pred             ------------------------------------------CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHH
Confidence                                                      245578899999999998754 9999999999999999


Q ss_pred             Hhc--CCCCCchhhHHhHhhccC---------------------CCC--------hhhhccChhhHHHHHHccCCCCCCC
Q 002736          265 LFC--PFSTGEEKTRTMSSLRHR---------------------VLP--------PQLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       265 Ll~--pf~~~~~~~~~~~~~~~~---------------------~~~--------~~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      |.+  |.+++....+.+..+.+-                     .+|        ..+...++++..+|.+||.+||.+|
T Consensus       203 l~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kR  282 (538)
T KOG0661|consen  203 LYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKR  282 (538)
T ss_pred             HHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccC
Confidence            999  887776665554433221                     011        1123356778899999999999999


Q ss_pred             CCHHHHhcCCCCCCCc
Q 002736          314 PKMGELLQSEFLNEPR  329 (886)
Q Consensus       314 ps~~eil~h~~~~~~~  329 (886)
                      |||.|+|+||||+...
T Consensus       283 pTA~~al~~pffq~~~  298 (538)
T KOG0661|consen  283 PTASQALQHPFFQVGR  298 (538)
T ss_pred             ccHHHHhcCccccccc
Confidence            9999999999998753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3e-34  Score=288.76  Aligned_cols=290  Identities=19%  Similarity=0.318  Sum_probs=249.6

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcE
Q 002736          563 DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVV  642 (886)
Q Consensus       563 ~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V  642 (886)
                      .+.+|.+.|.|+++.|.+++|+||+.|++|+|||+.+..       .-....+|...|..+++++ ...+++|++.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------LkltltGhi~~vr~vavS~-rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------LKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQV  217 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------EEEeecchhheeeeeeecc-cCceEEEecCCCee
Confidence            456899999999999999999999999999999998742       2233446889999999998 57799999999999


Q ss_pred             EEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCC
Q 002736          643 QVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDS  721 (886)
Q Consensus       643 ~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~  721 (886)
                      +.||++.++.++.|.+|-..|.|++.+| .-..|++|+.|.+++|||+++       ...+..+. |...|+.|.+.|- 
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRt-------r~~V~~l~GH~~~V~~V~~~~~-  288 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRT-------RASVHVLSGHTNPVASVMCQPT-  288 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecc-------cceEEEecCCCCcceeEEeecC-
Confidence            9999999999999999999999999999 778999999999999999999       77788887 5677999999988 


Q ss_pred             CcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCC
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT  800 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~  800 (886)
                      .-.+++||.|++|++||++.++. ..++..|+..|.+++.+ ....+||+|.| .|+-|++..+      ..+..+.+|.
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g------~f~~nlsgh~  360 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG------EFLQNLSGHN  360 (460)
T ss_pred             CCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc------chhhcccccc
Confidence            45699999999999999999995 88899999999999997 66778888876 6999999987      4477899999


Q ss_pred             CceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCE
Q 002736          801 NVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNI  880 (886)
Q Consensus       801 ~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I  880 (886)
                      ..|++++...|| ++++|+++|.+.+||..++-..+....   .  .+...-+....|.+.||...+. .|++|..|.+|
T Consensus       361 ~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t---~--vqpGSl~sEagI~as~fDktg~-rlit~eadKtI  433 (460)
T KOG0285|consen  361 AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT---I--VQPGSLESEAGIFASCFDKTGS-RLITGEADKTI  433 (460)
T ss_pred             ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc---c--ccCCccccccceeEEeecccCc-eEEeccCCcce
Confidence            999999988765 889999999999999998755443311   1  1111123455699999999999 99999999999


Q ss_pred             EEEE
Q 002736          881 KILE  884 (886)
Q Consensus       881 ~iw~  884 (886)
                      ++|.
T Consensus       434 k~~k  437 (460)
T KOG0285|consen  434 KMYK  437 (460)
T ss_pred             EEEe
Confidence            9996

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.4e-36  Score=297.63  Aligned_cols=195  Identities=19%  Similarity=0.223  Sum_probs=162.1

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhh---cCCCCCcChHHHHHHHHHHHHHHHhhcc--cC
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWL---DKPKRSVDVYECLHIFRQIVEIVYAAHS--QG  102 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l---~~~~~~l~~~~~~~i~~qi~~~l~~lHs--~g  102 (886)
                      .-+|.+.+|+|+|.+|.  .....+...++|+||| .+|+|.+.|   ++..+.+++..++.+|.|++.||..+|+  ..
T Consensus        69 i~lLkQL~HpNIVqYy~--~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r  146 (375)
T KOG0591|consen   69 ISLLKQLNHPNIVQYYA--HSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPR  146 (375)
T ss_pred             HHHHHhcCCchHHHHHH--HhhhccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccc
Confidence            34577899999999776  2222234568899999 889999988   3556789999999999999999999999  45


Q ss_pred             --eeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          103 --IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       103 --iiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                        |+||||||.||+|+.+|.||++|||+++.+.+...                                           
T Consensus       147 ~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~t-------------------------------------------  183 (375)
T KOG0591|consen  147 GTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTT-------------------------------------------  183 (375)
T ss_pred             cceeeccCcchheEEcCCCceeeccchhHhHhcchhH-------------------------------------------
Confidence              99999999999999999999999999976543210                                           


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     ....++|||+|||||.+.+.+|+++||||||||
T Consensus       184 -----------------------------------------------fA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGC  216 (375)
T KOG0591|consen  184 -----------------------------------------------FAHSLVGTPYYMSPERIHESGYNFKSDIWSLGC  216 (375)
T ss_pred             -----------------------------------------------HHHhhcCCCcccCHHHHhcCCCCcchhHHHHHH
Confidence                                                           123359999999999999999999999999999


Q ss_pred             HHHHHhc---CCCCCchhhHHhHhhccCCCChhh-hccChhhHHHHHHccCCCCCCCCCH
Q 002736          261 LLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL-LLKFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       261 il~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~Rps~  316 (886)
                      ++|||..   ||.+. .-......+.+..+||.+ ...+.++..+|..|+..||..||+.
T Consensus       217 llyEMcaL~~PF~g~-n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  217 LLYEMCALQSPFYGD-NLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             HHHHHHhcCCCcccc-cHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence            9999988   77665 555666777777887777 4456778899999999999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-34  Score=290.78  Aligned_cols=284  Identities=20%  Similarity=0.286  Sum_probs=253.9

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      +.+|..+|+.+-|+|+-.++|+++.|.+|++||+.+...+       ....+|...|.+|+|+. .+.++|+++.|-.++
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-------~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-------RSLRGHTDSVFDISFDA-SGKYLATCSSDLSAK  175 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-------hhhhccccceeEEEEec-CccEEEecCCccchh
Confidence            4679999999999999999999999999999999874321       12236888899999998 689999999999999


Q ss_pred             EEECCC-ceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCC
Q 002736          644 VWDVSR-SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDS  721 (886)
Q Consensus       644 iWd~~t-~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~  721 (886)
                      +||..+ .++++.+.+|...|.++.|.| .++++++|+.|.+|+.|++.+       +.++.++.. ...|..++.+.| 
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~t-------g~cv~t~~~h~ewvr~v~v~~D-  246 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDT-------GYCVKTFPGHSEWVRMVRVNQD-  246 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEeccc-------ceeEEeccCchHhEEEEEecCC-
Confidence            999987 467777889999999999999 789999999999999999999       888888875 456999999999 


Q ss_pred             CcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-----------CC-----CEEEEEECCCcEEEEeCCCCC
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-----------DA-----TTLVSASTDNTLKLWDLSMCT  785 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-----------~~-----~~l~sgs~Dg~i~lwd~~~~~  785 (886)
                      |.++|+++.|.+|++|-+.+.+ +...++.|+-+|-+++|.           .+     .+++++|.|++|++||+.++ 
T Consensus       247 Gti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-  324 (406)
T KOG0295|consen  247 GTIIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-  324 (406)
T ss_pred             eeEEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-
Confidence            9999999999999999999886 478899999999999981           22     58999999999999999998 


Q ss_pred             ccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEcc
Q 002736          786 SRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRG  865 (886)
Q Consensus       786 ~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~  865 (886)
                           .++.++.||.++|..++|+|.|+||+++.+|+++++||+.+..++...             +.|..+|++++|+.
T Consensus       325 -----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-------------~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  325 -----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-------------EAHEHFVTSLDFHK  386 (406)
T ss_pred             -----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc-------------CCCcceeEEEecCC
Confidence                 459999999999999999999999999999999999999998777433             46788999999999


Q ss_pred             CCCcEEEEEeCCCCEEEEEe
Q 002736          866 QSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       866 ~~~~~l~s~~~dg~I~iw~l  885 (886)
                      +.+ +++||+.|.++++|+.
T Consensus       387 ~~p-~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  387 TAP-YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCc-eEEeccccceeeeeec
Confidence            999 9999999999999974

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-36  Score=308.76  Aligned_cols=205  Identities=19%  Similarity=0.245  Sum_probs=167.1

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+||-++.+.+    .......+|+++|| .||.|+-.|.+. +.+++..++.|+..|+.||.|||++|||||||
T Consensus        77 ~IL~~v~hPFiv~l~y----sFQt~~kLylVld~~~GGeLf~hL~~e-g~F~E~~arfYlaEi~lAL~~LH~~gIiyRDl  151 (357)
T KOG0598|consen   77 NILSKIKHPFIVKLIY----SFQTEEKLYLVLDYLNGGELFYHLQRE-GRFSEDRARFYLAEIVLALGYLHSKGIIYRDL  151 (357)
T ss_pred             HHHHhCCCCcEeeeEE----ecccCCeEEEEEeccCCccHHHHHHhc-CCcchhHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            3455589999999888    33456778999999 999999999554 78999999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||||+..|+++++|||+|+....+..                                                   
T Consensus       152 KPENILLd~~GHi~LtDFgL~k~~~~~~~---------------------------------------------------  180 (357)
T KOG0598|consen  152 KPENILLDEQGHIKLTDFGLCKEDLKDGD---------------------------------------------------  180 (357)
T ss_pred             CHHHeeecCCCcEEEeccccchhcccCCC---------------------------------------------------
Confidence            99999999999999999999964322210                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ...+.+||+.|||||++.+..|+.++|+|||||++|||++ 
T Consensus       181 ---------------------------------------~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G  221 (357)
T KOG0598|consen  181 ---------------------------------------ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTG  221 (357)
T ss_pred             ---------------------------------------ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhC
Confidence                                                   1122599999999999999999999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC----CHHHHhcCCCCCCCcC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP----KMGELLQSEFLNEPRD  330 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----s~~eil~h~~~~~~~~  330 (886)
                        ||.. +.....+..+.....+......++++.+++.++|..||++|.    .+.++.+||||.....
T Consensus       222 ~pPF~~-~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW  289 (357)
T KOG0598|consen  222 KPPFYA-EDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINW  289 (357)
T ss_pred             CCCCcC-ccHHHHHHHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCCH
Confidence              6654 444444444444443333333568889999999999999995    6889999999998654

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-35  Score=322.74  Aligned_cols=209  Identities=21%  Similarity=0.277  Sum_probs=171.6

Q ss_pred             ccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccC
Q 002736           24 RKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQG  102 (886)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~g  102 (886)
                      +-|++.+.+-=.+|+|++.+|. ++++   ...+|++.|| .||.|+++|-+. +++++.++.++|+||+.||.|+|..+
T Consensus        58 ~IerEIviMkLi~HpnVl~Lyd-Vwe~---~~~lylvlEyv~gGELFdylv~k-G~l~e~eaa~ff~QIi~gv~yCH~~~  132 (786)
T KOG0588|consen   58 GIEREIVIMKLIEHPNVLRLYD-VWEN---KQHLYLVLEYVPGGELFDYLVRK-GPLPEREAAHFFRQILDGVSYCHAFN  132 (786)
T ss_pred             chhhhhHHHHHhcCCCeeeeee-eecc---CceEEEEEEecCCchhHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence            4556666666678999999998 6653   4567777888 999999999554 68999999999999999999999999


Q ss_pred             eeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          103 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       103 iiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |+||||||+|+||+..+++||+|||+|...-.+.                                              
T Consensus       133 icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gk----------------------------------------------  166 (786)
T KOG0588|consen  133 ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGK----------------------------------------------  166 (786)
T ss_pred             ceeccCCchhhhhhcccCEeeeccceeecccCCc----------------------------------------------
Confidence            9999999999999999999999999995332111                                              


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCC-CcccccchHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPV-SCASDIYRLGVL  261 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~-s~~sDIwSlGvi  261 (886)
                                                                   -..+.||+|+|+|||++.|.+| +.++||||+|||
T Consensus       167 ---------------------------------------------lLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVI  201 (786)
T KOG0588|consen  167 ---------------------------------------------LLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVI  201 (786)
T ss_pred             ---------------------------------------------cccccCCCcccCCchhhcCCCCCCCccccchhHHH
Confidence                                                         1122399999999999999997 789999999999


Q ss_pred             HHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       262 l~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      ||.||+   ||..++-+....+ +..+.+ ..+...++++.+||.+||..||++|+|++||++|||+.+...
T Consensus       202 LfALLtG~LPFdDdNir~LLlK-V~~G~f-~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~~  271 (786)
T KOG0588|consen  202 LFALLTGKLPFDDDNIRVLLLK-VQRGVF-EMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYTS  271 (786)
T ss_pred             HHHHHhCCCCCCCccHHHHHHH-HHcCcc-cCCCcCCHHHHHHHHHHhccCccccccHHHHhhCchhhcCCC
Confidence            999999   9986655554444 444433 223567799999999999999999999999999999876543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-32  Score=268.19  Aligned_cols=293  Identities=22%  Similarity=0.330  Sum_probs=235.9

Q ss_pred             ccCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcE
Q 002736          564 LLNSSNLVCSLSFDRD-GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVV  642 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d-~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V  642 (886)
                      +.+|.+.|-+++|+|- |..|||||.|+.|+||+.... .  ......+..-+|+..|..++|+| .+++||++|+|.++
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~--s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~   85 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-D--SWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATV   85 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-C--cEEEEEeccccchheeeeeeecC-CCcEEEEeeccceE
Confidence            4679999999999997 899999999999999998741 1  01112233346899999999999 79999999999999


Q ss_pred             EEEECCCc--eEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeC
Q 002736          643 QVWDVSRS--QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPL  719 (886)
Q Consensus       643 ~iWd~~t~--~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp  719 (886)
                      .||.-..+  +++..+++|+..|.|++|++ ++++||+|+.|.+|-||.+.....    -.+...+. |...|..|.|+|
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE----fec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE----FECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc----EEEEeeeccccccccEEEEcC
Confidence            99987654  68899999999999999997 999999999999999999985322    22333333 567799999999


Q ss_pred             CCCcEEEEEeCCCeEEEEecCCC--CcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEe
Q 002736          720 DSGRSLAFGSADHRIYYYDLRNS--KIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF  796 (886)
Q Consensus       720 ~~~~~l~~gs~Dg~I~vwDlr~~--~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  796 (886)
                      . ..+|+++|+|++|++|+-...  -..+.++.+|...|.+++|. .|..|++++.|++++||-....-          -
T Consensus       161 t-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----------~  229 (312)
T KOG0645|consen  161 T-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----------S  229 (312)
T ss_pred             C-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----------c
Confidence            8 789999999999999986522  13578999999999999997 68999999999999999976431          1


Q ss_pred             ecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCC--CcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEE
Q 002736          797 TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFP--MPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAA  874 (886)
Q Consensus       797 ~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~  874 (886)
                      .-|...+..+.|.  ...||+|+.|+.|++|.-...  .|...+        .......|..-|++|+|.|..+..|+++
T Consensus       230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l--------~~~~~~aHe~dVNsV~w~p~~~~~L~s~  299 (312)
T KOG0645|consen  230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL--------LAKKEGAHEVDVNSVQWNPKVSNRLASG  299 (312)
T ss_pred             hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH--------HHhhhcccccccceEEEcCCCCCceeec
Confidence            2367789999998  679999999999999986632  111111        1122356777899999999633389999


Q ss_pred             eCCCCEEEEEeC
Q 002736          875 NSSGNIKILEMV  886 (886)
Q Consensus       875 ~~dg~I~iw~l~  886 (886)
                      ++||.|++|.+.
T Consensus       300 ~DDG~v~~W~l~  311 (312)
T KOG0645|consen  300 GDDGIVNFWELE  311 (312)
T ss_pred             CCCceEEEEEec
Confidence            999999999873

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.8e-35  Score=320.61  Aligned_cols=201  Identities=23%  Similarity=0.279  Sum_probs=165.2

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...-....|+|+|+++. +.+   ..+..||+.|+ ..++|.+++++ .+.++|.|+++|++||+.||.|||++||||||
T Consensus        69 IeIHr~L~HpnIV~f~~-~FE---Ds~nVYivLELC~~~sL~el~Kr-rk~ltEpEary~l~QIv~GlkYLH~~~IiHRD  143 (592)
T KOG0575|consen   69 IEIHRSLKHPNIVQFYH-FFE---DSNNVYIVLELCHRGSLMELLKR-RKPLTEPEARYFLRQIVEGLKYLHSLGIIHRD  143 (592)
T ss_pred             HHHHHhcCCCcEEeeee-Eee---cCCceEEEEEecCCccHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHHhcCceecc
Confidence            33445578999999888 333   34667888888 77899999974 47899999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      ||..||||+.+.+|||+|||+|.....+..                                                  
T Consensus       144 LKLGNlfL~~~~~VKIgDFGLAt~le~~~E--------------------------------------------------  173 (592)
T KOG0575|consen  144 LKLGNLFLNENMNVKIGDFGLATQLEYDGE--------------------------------------------------  173 (592)
T ss_pred             cchhheeecCcCcEEecccceeeeecCccc--------------------------------------------------
Confidence            999999999999999999999976543310                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              +..+.||||-|.|||++.....++.+||||+||+||-||.
T Consensus       174 ----------------------------------------rk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~  213 (592)
T KOG0575|consen  174 ----------------------------------------RKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLV  213 (592)
T ss_pred             ----------------------------------------ccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhh
Confidence                                                    1233599999999999999889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccC-CCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHR-VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                         ||.+..-.. .+..+... ...|.  ..+.++++||.+||.+||.+|||+++||.|+||..
T Consensus       214 G~PPFetk~vke-ty~~Ik~~~Y~~P~--~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~  274 (592)
T KOG0575|consen  214 GRPPFETKTVKE-TYNKIKLNEYSMPS--HLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFKS  274 (592)
T ss_pred             CCCCcccchHHH-HHHHHHhcCccccc--ccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhhC
Confidence               665554444 44444443 33333  56688999999999999999999999999999954

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-35  Score=314.71  Aligned_cols=211  Identities=18%  Similarity=0.200  Sum_probs=164.5

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|+-++.+|+ ...   +...+|.++|| .+|+|.++|++- +.|++..+++|+.||++||+|||++|||||||||+|||
T Consensus       132 ~hPgivkLy~-TFQ---D~~sLYFvLe~A~nGdll~~i~K~-Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENIL  206 (604)
T KOG0592|consen  132 GHPGIVKLYF-TFQ---DEESLYFVLEYAPNGDLLDLIKKY-GSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENIL  206 (604)
T ss_pred             CCCCeEEEEE-Eee---cccceEEEEEecCCCcHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhhee
Confidence            7888888888 333   34557788888 999999999665 78999999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      |+.++++||+|||.|+.+........                               ++.                    
T Consensus       207 Ld~dmhikITDFGsAK~l~~~~~~~~-------------------------------~~~--------------------  235 (604)
T KOG0592|consen  207 LDKDGHIKITDFGSAKILSPSQKSQE-------------------------------NPV--------------------  235 (604)
T ss_pred             EcCCCcEEEeeccccccCChhhcccc-------------------------------Ccc--------------------
Confidence            99999999999999986643311000                               000                    


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFST  271 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~  271 (886)
                                               ...+.. .....++||..|.+||++.....++++|||+||||||.|+.   ||..
T Consensus       236 -------------------------~~~~a~-s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra  289 (604)
T KOG0592|consen  236 -------------------------DPNQAS-SRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRA  289 (604)
T ss_pred             -------------------------Cccccc-CcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcc
Confidence                                     000000 01233599999999999999999999999999999999999   7766


Q ss_pred             CchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          272 GEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      .++-.....++.-..-  .+.+.++.+.+|+.++|..||.+|+|++||.+||||.....
T Consensus       290 ~NeyliFqkI~~l~y~--fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw  346 (604)
T KOG0592|consen  290 ANEYLIFQKIQALDYE--FPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGVDW  346 (604)
T ss_pred             ccHHHHHHHHHHhccc--CCCCCCHHHHHHHHHHHccCccccccHHHHhhCcccccCCh
Confidence            6655544444433222  22233477889999999999999999999999999998653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.3e-32  Score=285.98  Aligned_cols=320  Identities=21%  Similarity=0.346  Sum_probs=255.0

Q ss_pred             cccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEe
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       535 ~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~  614 (886)
                      ..+++..|+++.|+.-.=++...++     ..|+.-|.|+.|+|||++|||+|.||+|.|||=.+...-....    -..
T Consensus       162 Ri~T~sdDn~v~ffeGPPFKFk~s~-----r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~----~~~  232 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEGPPFKFKSSF-----REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE----DSD  232 (603)
T ss_pred             EEEeccCCCeEEEeeCCCeeeeecc-----cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec----CCC
Confidence            4578889999999987766666555     5699999999999999999999999999999977642211110    134


Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEE---------------------------------------
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTE---------------------------------------  655 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~---------------------------------------  655 (886)
                      +|.+.|.+|+|+| +...++|++.|.+++|||+.+++++++                                       
T Consensus       233 aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~  311 (603)
T KOG0318|consen  233 AHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS  311 (603)
T ss_pred             CccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence            6999999999999 789999999999999999987654433                                       


Q ss_pred             ----ecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhc---------------------------------
Q 002736          656 ----MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLH---------------------------------  698 (886)
Q Consensus       656 ----~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~---------------------------------  698 (886)
                          +.+|.+.|+++..+| ++.+|.+|+.||.|.-||+.+......                                 
T Consensus       312 ~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~  390 (603)
T KOG0318|consen  312 VLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVIS  390 (603)
T ss_pred             hhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEe
Confidence                358999999999998 889999999999999999855221100                                 


Q ss_pred             -------------cC---c--------------------------eeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 002736          699 -------------LG---V--------------------------SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYY  736 (886)
Q Consensus       699 -------------~~---~--------------------------~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~v  736 (886)
                                   ++   .                          .+..++......+++++|+ +..+++|+.|+.|++
T Consensus       391 ~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhv  469 (603)
T KOG0318|consen  391 LKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHV  469 (603)
T ss_pred             cccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEE
Confidence                         00   0                          0000111234568899999 899999999999999


Q ss_pred             EecCCCC-cceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCE
Q 002736          737 YDLRNSK-IPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGY  814 (886)
Q Consensus       737 wDlr~~~-~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~  814 (886)
                      |.+.... .+...+..|..+|++|+|+ |+.+||+|...+.+.+||+.+...     ......=|+..|++|+|+|+..+
T Consensus       470 ysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-----~~~~w~FHtakI~~~aWsP~n~~  544 (603)
T KOG0318|consen  470 YSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-----KTNRWAFHTAKINCVAWSPNNKL  544 (603)
T ss_pred             EEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-----ecceeeeeeeeEEEEEeCCCceE
Confidence            9998754 3455677899999999998 999999999999999999998743     12223349999999999999999


Q ss_pred             EEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          815 VATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       815 lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      +||||.|-.|.||++..+......+            ..|...|+.|.|-.+.  .|++++.|-+||+|.+
T Consensus       545 vATGSlDt~Viiysv~kP~~~i~ik------------nAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  545 VATGSLDTNVIIYSVKKPAKHIIIK------------NAHLGGVNSVAWLDES--TVVSSGQDANIKVWNV  601 (603)
T ss_pred             EEeccccceEEEEEccChhhheEec------------cccccCceeEEEecCc--eEEeccCcceeEEecc
Confidence            9999999999999998876543222            3465669999997654  6999999999999986

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.1e-35  Score=293.87  Aligned_cols=206  Identities=16%  Similarity=0.227  Sum_probs=162.9

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      +.-.|-+..|+|.|.+.. ++.   ....+++|+||+..++.+-|.+....++...++.|+.|++.|+.|+|++++||||
T Consensus        51 EIrmLKqLkH~NLVnLiE-VFr---rkrklhLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRD  126 (396)
T KOG0593|consen   51 EIRMLKQLKHENLVNLIE-VFR---RKRKLHLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRD  126 (396)
T ss_pred             HHHHHHhcccchHHHHHH-HHH---hcceeEEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeeccc
Confidence            334455566777766555 433   5678999999999998888877778899999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||||+.+|.+|+||||+|+.+..+.                                                   
T Consensus       127 IKPENILit~~gvvKLCDFGFAR~L~~pg---------------------------------------------------  155 (396)
T KOG0593|consen  127 IKPENILITQNGVVKLCDFGFARTLSAPG---------------------------------------------------  155 (396)
T ss_pred             CChhheEEecCCcEEeccchhhHhhcCCc---------------------------------------------------
Confidence            99999999999999999999997553110                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHh
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl  266 (886)
                                                             -..|.++-|.||+|||.+.| .+|+.++|||++||++.||+
T Consensus       156 ---------------------------------------d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~  196 (396)
T KOG0593|consen  156 ---------------------------------------DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELL  196 (396)
T ss_pred             ---------------------------------------chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHh
Confidence                                                   02355688999999999998 56999999999999999999


Q ss_pred             c--CCCCCchhhHHhHhhcc---------------CC------CC-----h----hhhccChhhHHHHHHccCCCCCCCC
Q 002736          267 C--PFSTGEEKTRTMSSLRH---------------RV------LP-----P----QLLLKFPKEASFCLWLLHPEPSGRP  314 (886)
Q Consensus       267 ~--pf~~~~~~~~~~~~~~~---------------~~------~~-----~----~~~~~~~~~~~li~~~L~~dP~~Rp  314 (886)
                      +  |++++.........++.               ..      +|     .    ..+..+.-+.+|+..||+.||.+|+
T Consensus       197 ~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~  276 (396)
T KOG0593|consen  197 TGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRL  276 (396)
T ss_pred             cCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccc
Confidence            9  88777665554333221               00      01     1    1122334456999999999999999


Q ss_pred             CHHHHhcCCCCCC
Q 002736          315 KMGELLQSEFLNE  327 (886)
Q Consensus       315 s~~eil~h~~~~~  327 (886)
                      +.+|+|.|+||+.
T Consensus       277 sc~qll~H~yFd~  289 (396)
T KOG0593|consen  277 SCEQLLHHPYFDG  289 (396)
T ss_pred             cHHHHhcChHHHH
Confidence            9999999999954

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.2e-33  Score=288.96  Aligned_cols=288  Identities=19%  Similarity=0.324  Sum_probs=244.7

Q ss_pred             cCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcCcccCc--c-cccccce----EEecCCCCeeeEEEeCCCCCeEEEe
Q 002736          565 LNSSNLVCSLSFDRDGE-LFAAAGVNKKIKVFECDAIINE--N-RDIHYPV----VEMASRSKLSSICWNSYIKSQIASS  636 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~-~lat~~~d~~Ikiwd~~~~~~~--~-~~~~~~~----~~~~~~~~I~~l~~~~~~~~~las~  636 (886)
                      .+|..+|++++|+|-.. ++|+|+.|-..++|++......  . .....++    ........|++++||. +++.||+|
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-~G~~LatG  253 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-DGTLLATG  253 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-CCCeEEEe
Confidence            34999999999999655 9999999999999998741111  0 0111111    2223446799999998 79999999


Q ss_pred             cCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCe-EEE
Q 002736          637 NFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANV-CCV  715 (886)
Q Consensus       637 s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v-~~v  715 (886)
                      ++||.++||+. .+..+..+..|.++|.++.|+. .++++++++-|+++.|||..+       +...+.+..+..+ ..|
T Consensus       254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~-------g~~~q~f~~~s~~~lDV  324 (524)
T KOG0273|consen  254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHT-------GTVKQQFEFHSAPALDV  324 (524)
T ss_pred             ecCcEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccC-------ceEEEeeeeccCCccce
Confidence            99999999997 4667788899999999999996 999999999999999999988       6666666655554 778


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCce
Q 002736          716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLH  794 (886)
Q Consensus       716 ~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  794 (886)
                      .|-.+  ..|++.+.|+.|+++-+.... |+.++.+|...|.+++|. .+.+|+|+|.|++++||......      ...
T Consensus       325 dW~~~--~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~------~~~  395 (524)
T KOG0273|consen  325 DWQSN--DEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN------SVH  395 (524)
T ss_pred             EEecC--ceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc------chh
Confidence            99765  579999999999999997665 799999999999999996 88999999999999999987763      478


Q ss_pred             EeecCCCceeEEEEecCCC---------EEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEcc
Q 002736          795 SFTGHTNVKNFVGLSVWDG---------YVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRG  865 (886)
Q Consensus       795 ~~~~h~~~v~~v~~sp~g~---------~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~  865 (886)
                      .+.+|..+|..+.|+|.|.         .+|+++.|++|++||+..+.++..|.             .|..+|++|+|+|
T Consensus       396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-------------kH~~pVysvafS~  462 (524)
T KOG0273|consen  396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-------------KHQEPVYSVAFSP  462 (524)
T ss_pred             hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-------------cCCCceEEEEecC
Confidence            8999999999999999864         79999999999999999999987653             4677899999999


Q ss_pred             CCCcEEEEEeCCCCEEEEEe
Q 002736          866 QSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       866 ~~~~~l~s~~~dg~I~iw~l  885 (886)
                      +|. ++|+|+-||.|+||+.
T Consensus       463 ~g~-ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  463 NGR-YLASGSLDGCVHIWST  481 (524)
T ss_pred             CCc-EEEecCCCCeeEeccc
Confidence            999 9999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6e-32  Score=295.32  Aligned_cols=319  Identities=19%  Similarity=0.356  Sum_probs=269.9

Q ss_pred             ccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEcCcccCcccccccceEEe
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVN-KKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d-~~Ikiwd~~~~~~~~~~~~~~~~~~  614 (886)
                      .+.||..|...++.+....++..|.-     ...+|..+.|+..|+.||.|+.. |.+-||++...       .+.....
T Consensus       280 lvvgFssG~f~LyelP~f~lih~LSi-----s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-------sYVlKQQ  347 (893)
T KOG0291|consen  280 LVVGFSSGEFGLYELPDFNLIHSLSI-----SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-------SYVLKQQ  347 (893)
T ss_pred             EEEEecCCeeEEEecCCceEEEEeec-----ccceeeEEEecccCCEEEEcCCccceEEEEEeecc-------ceeeecc
Confidence            47889999999999999999888743     35689999999999999998764 89999999763       4455566


Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhh
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI  694 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~  694 (886)
                      +|...++|++++| +++++|+|+.||.|+|||..++-|+.+|.+|+..|+.+.|+. .++.+++.|-||+|+.||+..  
T Consensus       348 gH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkR--  423 (893)
T KOG0291|consen  348 GHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKR--  423 (893)
T ss_pred             ccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecc--
Confidence            7999999999999 799999999999999999999999999999999999999996 999999999999999999988  


Q ss_pred             hhhccCceeeeeecCC--CeEEEEEeCCCCcEEEEEeCCC-eEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEE
Q 002736          695 LLLHLGVSIGTIKTKA--NVCCVQFPLDSGRSLAFGSADH-RIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSA  770 (886)
Q Consensus       695 ~~~~~~~~~~~~~~~~--~v~~v~~sp~~~~~l~~gs~Dg-~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sg  770 (886)
                           .....++..+.  +..||+..|. |.++++|+.|. .|++|++.+++. +..+.||+++|.+++|+ .+..|+||
T Consensus       424 -----YrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  424 -----YRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDGSLLASG  496 (893)
T ss_pred             -----cceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEccccCeEEec
Confidence                 56666665544  4689999999 88999999886 499999999995 99999999999999997 89999999


Q ss_pred             ECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCC-
Q 002736          771 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGP-  849 (886)
Q Consensus       771 s~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-  849 (886)
                      |+|.+||+||+-....     .+.++. +...+..++|+|+|+-||++..||.|.+||......+.++..-. +...+. 
T Consensus       497 SWDkTVRiW~if~s~~-----~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk-D~~~gR~  569 (893)
T KOG0291|consen  497 SWDKTVRIWDIFSSSG-----TVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK-DLSGGRK  569 (893)
T ss_pred             cccceEEEEEeeccCc-----eeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh-hcccccc
Confidence            9999999999976532     234443 66779999999999999999999999999998876654333211 111111 


Q ss_pred             -------ccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          850 -------ETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       850 -------~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                             +..........+|+++||. .+++||....|++|++
T Consensus       570 ~~D~~ta~~sa~~K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  570 ETDRITAENSAKGKTFTTICYSADGK-CILAGGESNSICIYDV  611 (893)
T ss_pred             ccceeehhhcccCCceEEEEEcCCCC-EEEecCCcccEEEEEC
Confidence                   1123457799999999999 9999999999999985

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-33  Score=268.78  Aligned_cols=283  Identities=19%  Similarity=0.331  Sum_probs=239.2

Q ss_pred             EEEEEcC-CCCEEEEE-------eCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          572 CSLSFDR-DGELFAAA-------GVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       572 ~sl~f~~-d~~~lat~-------~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      .++.|+| -..+||.+       ...|++.|.++...     ........+.....+..|+|+++..+.+++++.||+++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~-----~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr   86 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP-----KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLR   86 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCC-----CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEE
Confidence            5788998 22344433       23588888887631     11222344557788999999999999999999999999


Q ss_pred             EEECCC-ceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecC-CCeEEEEEeCCC
Q 002736          644 VWDVSR-SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTK-ANVCCVQFPLDS  721 (886)
Q Consensus       644 iWd~~t-~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~~  721 (886)
                      |||..- ..++..+++|...|.+++|++.....++++|-||+||||+...       +..+.++.++ ..|...+|+|..
T Consensus        87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-------~~Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-------PNSVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-------CcceEeecCCccEEEEEecCCCC
Confidence            999643 3578899999999999999998889999999999999999988       7777777754 559999999999


Q ss_pred             CcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h  799 (886)
                      +++++++|.|+++++||+|....++. +..|...+.++.|+  +...|+||+.|+.|+.||+++.+     .|+..+.||
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh  233 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGH  233 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCC
Confidence            99999999999999999998876444 88999999999997  88999999999999999999875     689999999


Q ss_pred             CCceeEEEEecCC-CEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCC
Q 002736          800 TNVKNFVGLSVWD-GYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSG  878 (886)
Q Consensus       800 ~~~v~~v~~sp~g-~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg  878 (886)
                      .-.|+.|.|||.. ..||++|.|-+++|||...+....            ...+.|.+||..+.|++-.+..+|+++.|+
T Consensus       234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~------------e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe  301 (311)
T KOG0277|consen  234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI------------ETVDHHTEFVCGLDWSLFDPGQVASTGWDE  301 (311)
T ss_pred             ceEEEEEecCcchhhHhhhccccceEEecccccchhhh------------hhhhccceEEeccccccccCceeeeccccc
Confidence            9999999999985 599999999999999987544321            234678999999999998776999999999


Q ss_pred             CEEEEE
Q 002736          879 NIKILE  884 (886)
Q Consensus       879 ~I~iw~  884 (886)
                      .++||+
T Consensus       302 ~l~Vw~  307 (311)
T KOG0277|consen  302 LLYVWN  307 (311)
T ss_pred             ceeeec
Confidence            999997

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-35  Score=302.30  Aligned_cols=225  Identities=17%  Similarity=0.185  Sum_probs=179.3

Q ss_pred             ccccccCceeecccccccCCCCCCcccc-ccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCE-NEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      ..|..++...+-|..|+|++..+.-+-. ...+..-+|+++|+.+.+|.+.|+.. ..++...+..++.||+.||.|+||
T Consensus        65 akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMetDL~~iik~~-~~L~d~H~q~f~YQiLrgLKyiHS  143 (359)
T KOG0660|consen   65 AKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELMETDLHQIIKSQ-QDLTDDHAQYFLYQILRGLKYIHS  143 (359)
T ss_pred             HHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHHhhHHHHHHHcC-ccccHHHHHHHHHHHHHhcchhhc
Confidence            3477788888999999999988873222 12245668999999999999999654 569999999999999999999999


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      .||+||||||+|++++.+..+||+|||+|+......                                            
T Consensus       144 AnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~--------------------------------------------  179 (359)
T KOG0660|consen  144 ANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFF--------------------------------------------  179 (359)
T ss_pred             ccccccccchhheeeccCCCEEeccccceeeccccC--------------------------------------------
Confidence            999999999999999999999999999996543210                                            


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLG  259 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlG  259 (886)
                                                                  .....|.++.|.||+|||++.. ..||.+.||||+|
T Consensus       180 --------------------------------------------~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvG  215 (359)
T KOG0660|consen  180 --------------------------------------------EDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVG  215 (359)
T ss_pred             --------------------------------------------cccchhcceeeeeecCHHHHhccccccchhhhhhhh
Confidence                                                        0013456789999999999876 4599999999999


Q ss_pred             HHHHHHhc--CCCCCchhhHHhHhhcc------------------------------CCCChhhhccChhhHHHHHHccC
Q 002736          260 VLLFELFC--PFSTGEEKTRTMSSLRH------------------------------RVLPPQLLLKFPKEASFCLWLLH  307 (886)
Q Consensus       260 vil~eLl~--pf~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~li~~~L~  307 (886)
                      |||.||++  |.+.+.+....+..+..                              ..+...++...|.+.+|+.+||.
T Consensus       216 CI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~  295 (359)
T KOG0660|consen  216 CILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLV  295 (359)
T ss_pred             HHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhc
Confidence            99999999  77776554443322211                              01112345567888999999999


Q ss_pred             CCCCCCCCHHHHhcCCCCCCCcCchHHH
Q 002736          308 PEPSGRPKMGELLQSEFLNEPRDSMEER  335 (886)
Q Consensus       308 ~dP~~Rps~~eil~h~~~~~~~~~~~e~  335 (886)
                      .||.+|+|++|+|+||||.....+..|.
T Consensus       296 fdP~kRita~eAL~hPYl~~~hdp~dEP  323 (359)
T KOG0660|consen  296 FDPKKRITAEEALAHPYLAPYHDPEDEP  323 (359)
T ss_pred             cCccccCCHHHHhcChhhhhhcCCccCC
Confidence            9999999999999999999877666554

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-35  Score=288.99  Aligned_cols=197  Identities=16%  Similarity=0.179  Sum_probs=166.1

Q ss_pred             cccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCc
Q 002736           33 THGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS  111 (886)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~  111 (886)
                      ....||..+.+++    .....+.+|++||| .||.|..||++. +++++..++.|+.||+.||+|||+++|++|||||+
T Consensus        99 ~~v~~PFlv~l~~----t~~d~~~lymvmeyv~GGElFS~Lrk~-~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPE  173 (355)
T KOG0616|consen   99 KAVSHPFLVKLYG----TFKDNSNLYMVMEYVPGGELFSYLRKS-GRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPE  173 (355)
T ss_pred             hhccCceeEEEEE----eeccCCeEEEEEeccCCccHHHHHHhc-CCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChH
Confidence            3345777777665    34456789999999 999999999765 78999999999999999999999999999999999


Q ss_pred             ceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCC
Q 002736          112 CFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSS  191 (886)
Q Consensus       112 NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  191 (886)
                      ||||+.+|++||+|||+|+....                                                         
T Consensus       174 NiLlD~~G~iKitDFGFAK~v~~---------------------------------------------------------  196 (355)
T KOG0616|consen  174 NLLLDQNGHIKITDFGFAKRVSG---------------------------------------------------------  196 (355)
T ss_pred             HeeeccCCcEEEEeccceEEecC---------------------------------------------------------
Confidence            99999999999999999954310                                                         


Q ss_pred             ccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---C
Q 002736          192 AYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---P  268 (886)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---p  268 (886)
                                                          ...+.||||-|+|||++...+|+.++|+|+|||++|||++   |
T Consensus       197 ------------------------------------rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pP  240 (355)
T KOG0616|consen  197 ------------------------------------RTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPP  240 (355)
T ss_pred             ------------------------------------cEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCC
Confidence                                                2345699999999999999999999999999999999999   8


Q ss_pred             CCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCC-----CCHHHHhcCCCCCCCc
Q 002736          269 FSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGR-----PKMGELLQSEFLNEPR  329 (886)
Q Consensus       269 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R-----ps~~eil~h~~~~~~~  329 (886)
                      |+..+.......++......|.  ..++++.+|+.++|+.|-.+|     ....+|..||||++..
T Consensus       241 F~~~~~~~iY~KI~~~~v~fP~--~fs~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~  304 (355)
T KOG0616|consen  241 FYDDNPIQIYEKILEGKVKFPS--YFSSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVD  304 (355)
T ss_pred             CcCCChHHHHHHHHhCcccCCc--ccCHHHHHHHHHHHhhhhHhhhcCcCCCccccccCccccccc
Confidence            8888775555555555544333  234889999999999999999     3568899999999753

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1e-34  Score=311.22  Aligned_cols=258  Identities=13%  Similarity=0.151  Sum_probs=175.7

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      +.|.|++.+.-  .+.+.+|++|+    .....+.+|++||| .||++..+|.+. +.|++.+++.|+.+++.|++.+|.
T Consensus       187 hV~aERdiL~~--~ds~~vVKLyY----sFQD~~~LYLiMEylPGGD~mTLL~~~-~~L~e~~arfYiaE~vlAI~~iH~  259 (550)
T KOG0605|consen  187 HVRAERDILAE--VDSPWVVKLYY----SFQDKEYLYLIMEYLPGGDMMTLLMRK-DTLTEDWARFYIAETVLAIESIHQ  259 (550)
T ss_pred             HHHHHHHHhhh--cCCCcEEEEEE----EecCCCeeEEEEEecCCccHHHHHHhc-CcCchHHHHHHHHHHHHHHHHHHH
Confidence            45777776655  68888899888    33456789999999 999999999554 789999999999999999999999


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      .|+|||||||+|+||+..||+||.|||+|.-+......+...........            .......++....     
T Consensus       260 ~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-----  322 (550)
T KOG0605|consen  260 LGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQIN------------LSEAKPSDFPKFN-----  322 (550)
T ss_pred             cCcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhh------------hccCCCccccccc-----
Confidence            99999999999999999999999999999654332211100000000000            0000000000000     


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                            .....+...+  ..             ..+..+.+...++     .+|||-|+|||++.+..|+..+|+|||||
T Consensus       323 ------~~~~~~~~~~--~~-------------~~w~~nrr~~a~S-----tVGTPDYiAPEVll~kgY~~~cDwWSLG~  376 (550)
T KOG0605|consen  323 ------TPRSTMSRRE--QL-------------QTWKRNRRQLAYS-----TVGTPDYIAPEVLLGKGYGKECDWWSLGC  376 (550)
T ss_pred             ------cccchhhHHH--HH-------------HHHHhhhhhhhhc-----ccCCccccchHHHhcCCCCccccHHHHHH
Confidence                  0000000000  00             0000111112222     49999999999999999999999999999


Q ss_pred             HHHHHhc--CCCCCchhhHHhHhhccC---CCChhhhccChhhHHHHHHccCCCCCCCC---CHHHHhcCCCCCCCcC
Q 002736          261 LLFELFC--PFSTGEEKTRTMSSLRHR---VLPPQLLLKFPKEASFCLWLLHPEPSGRP---KMGELLQSEFLNEPRD  330 (886)
Q Consensus       261 il~eLl~--pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rp---s~~eil~h~~~~~~~~  330 (886)
                      |+||||.  |.+..+....+...+..+   ...|.-....+++.+||.+||. ||.+|.   +++||.+||||.....
T Consensus       377 ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W  453 (550)
T KOG0605|consen  377 IMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDW  453 (550)
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCc
Confidence            9999999  333455555555555443   3344445566889999999999 999995   5999999999998654

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6e-35  Score=307.74  Aligned_cols=216  Identities=21%  Similarity=0.236  Sum_probs=169.9

Q ss_pred             ccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           26 HSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      +.+...+.+.+|+|+|..+|.....+.  ..++|.||| .||+|.+++++.++.|++..++.+.+||++||.|||++|||
T Consensus        62 ~~Ei~iL~~l~~p~IV~~~G~~~~~~~--~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~v  139 (313)
T KOG0198|consen   62 EREIRILSRLNHPNIVQYYGSSSSREN--DEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIV  139 (313)
T ss_pred             HHHHHHHHhCCCCCEEeeCCccccccC--eeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            344555666779999998882122211  479999999 99999999977655899999999999999999999999999


Q ss_pred             ecccCCcceeecc-CCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccc
Q 002736          105 VHNVRPSCFVMSS-FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSE  183 (886)
Q Consensus       105 HrDlkP~NIll~~-~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  183 (886)
                      ||||||+|||+++ ++.+||+|||+++........                                             
T Consensus       140 H~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~---------------------------------------------  174 (313)
T KOG0198|consen  140 HCDIKPANILLDPSNGDVKLADFGLAKKLESKGTK---------------------------------------------  174 (313)
T ss_pred             ccCcccceEEEeCCCCeEEeccCcccccccccccc---------------------------------------------
Confidence            9999999999999 699999999998654321000                                             


Q ss_pred             ccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHH
Q 002736          184 ASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLL  262 (886)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil  262 (886)
                                                                +.......||+.|||||++..+. ...++|||||||++
T Consensus       175 ------------------------------------------~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtV  212 (313)
T KOG0198|consen  175 ------------------------------------------SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTV  212 (313)
T ss_pred             ------------------------------------------ccccccccCCccccCchhhcCCCcCCccchhhhcCCEE
Confidence                                                      00111248999999999998632 34599999999999


Q ss_pred             HHHhc---CCCC-CchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          263 FELFC---PFST-GEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       263 ~eLl~---pf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      .||+|   ||.. ................|+.+...++++.+|+.+|+..||++||||.++|+|||+.....
T Consensus       213 vEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  213 VEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             EeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhcccc
Confidence            99999   6644 33344445555555566666677888999999999999999999999999999986543

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.1e-34  Score=305.76  Aligned_cols=214  Identities=20%  Similarity=0.221  Sum_probs=172.3

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ++...|-+.+|+|++++-+-+.+ . ....+|+|+||..-+|.-++..+.-+|++.+++.|++||+.||+|||++||+||
T Consensus       165 REI~ILr~l~HpNIikL~eivt~-~-~~~siYlVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHR  242 (560)
T KOG0600|consen  165 REIKILRRLDHPNIIKLEEIVTS-K-LSGSIYLVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHR  242 (560)
T ss_pred             HHHHHHHhcCCCcccceeeEEEe-c-CCceEEEEEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeec
Confidence            67788888999999997773332 2 346799999999999999998887899999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      |||.+||||+.+|.+||+|||+|+.+......                                                
T Consensus       243 DIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~------------------------------------------------  274 (560)
T KOG0600|consen  243 DIKGSNILIDNNGVLKIADFGLARFYTPSGSA------------------------------------------------  274 (560)
T ss_pred             cccccceEEcCCCCEEeccccceeeccCCCCc------------------------------------------------
Confidence            99999999999999999999999755322100                                                


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFEL  265 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eL  265 (886)
                                                               ..|..+-|.||+|||++.|.. |+.++|+||.||||.||
T Consensus       275 -----------------------------------------~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El  313 (560)
T KOG0600|consen  275 -----------------------------------------PYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAEL  313 (560)
T ss_pred             -----------------------------------------ccccceEEeeccChHHhcCCcccccceeehhhhHHHHHH
Confidence                                                     123347799999999999965 99999999999999999


Q ss_pred             hc--CCCCCchhhHHhHhhcc---CC---------CC----------------hhhhccChhhHHHHHHccCCCCCCCCC
Q 002736          266 FC--PFSTGEEKTRTMSSLRH---RV---------LP----------------PQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       266 l~--pf~~~~~~~~~~~~~~~---~~---------~~----------------~~~~~~~~~~~~li~~~L~~dP~~Rps  315 (886)
                      +.  |++.+......+..+..   .+         +|                ..+...++.+.+|+..||..||.+|.|
T Consensus       314 ~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~t  393 (560)
T KOG0600|consen  314 FLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGT  393 (560)
T ss_pred             HcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCcccccc
Confidence            99  87777666555443321   10         01                112223455679999999999999999


Q ss_pred             HHHHhcCCCCCCCcCc
Q 002736          316 MGELLQSEFLNEPRDS  331 (886)
Q Consensus       316 ~~eil~h~~~~~~~~~  331 (886)
                      |.++|+++||...+.+
T Consensus       394 A~~aL~seyF~t~p~~  409 (560)
T KOG0600|consen  394 ASSALQSEYFTTEPLP  409 (560)
T ss_pred             HHHHhcCcccccCCCC
Confidence            9999999999665433

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4e-34  Score=314.49  Aligned_cols=201  Identities=24%  Similarity=0.348  Sum_probs=164.2

Q ss_pred             eeecccc-cccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGD-HLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+.... |+|++.++. +...   ...+|++||| .||+|.+++.+ .+++.+.+++.+|+||+.||+|||++||+|||
T Consensus        71 ~~~~~~~~HpnI~~l~e-v~~t---~~~~~ivmEy~~gGdL~~~i~~-~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRD  145 (370)
T KOG0583|consen   71 SILRRLRSHPNIIRLLE-VFAT---PTKIYIVMEYCSGGDLFDYIVN-KGRLKEDEARKYFRQLISAVAYCHSRGIVHRD  145 (370)
T ss_pred             HHHHHhccCCCEeEEEE-EEec---CCeEEEEEEecCCccHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHhCCEeeCC
Confidence            3444455 888888777 4443   3449999999 77899999977 57899999999999999999999999999999


Q ss_pred             cCCcceeeccC-CceeeeeCCccCCCC-CCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          108 VRPSCFVMSSF-NHVSFIESASCSDSG-SDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       108 lkP~NIll~~~-~~vki~dfg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||+|||++.+ +++||+|||++.... .+.                                                 
T Consensus       146 LK~ENilld~~~~~~Kl~DFG~s~~~~~~~~-------------------------------------------------  176 (370)
T KOG0583|consen  146 LKPENILLDGNEGNLKLSDFGLSAISPGEDG-------------------------------------------------  176 (370)
T ss_pred             CCHHHEEecCCCCCEEEeccccccccCCCCC-------------------------------------------------
Confidence            99999999998 999999999996542 110                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CC-cccccchHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VS-CASDIYRLGVLLF  263 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s-~~sDIwSlGvil~  263 (886)
                                                                ...+.+||+.|+|||++.+.. |+ .++||||+||+||
T Consensus       177 ------------------------------------------~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy  214 (370)
T KOG0583|consen  177 ------------------------------------------LLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILY  214 (370)
T ss_pred             ------------------------------------------cccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHH
Confidence                                                      112249999999999999977 85 7999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      .|++   ||...................|.+.. ++++..|+.+||..||.+|+++.+++.||||+.
T Consensus       215 ~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~-S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  215 VLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLL-SPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             HHHhCCCCCCCccHHHHHHHHhcCCccCCCCcC-CHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence            9999   88775544444443444343444333 799999999999999999999999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=289.72  Aligned_cols=271  Identities=21%  Similarity=0.345  Sum_probs=233.8

Q ss_pred             cccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      .+..++|...|...+|+..+....     -.+..|..+|+++.|+++|.++++|..+|.||+|+..-..-.       ..
T Consensus       108 GRRLltgs~SGEFtLWNg~~fnFE-----tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-------~~  175 (464)
T KOG0284|consen  108 GRRLLTGSQSGEFTLWNGTSFNFE-----TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-------II  175 (464)
T ss_pred             CceeEeecccccEEEecCceeeHH-----HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-------Hh
Confidence            467899999999999998654322     223679999999999999999999999999999987642110       11


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      .-.|...|.+++|+| ..+.++|++.||+|+|||....+.-+.+.+|.-.|.+++|+| ...++|+|++|..|++||.++
T Consensus       176 ~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             hHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC
Confidence            123558999999999 788999999999999999998888888899999999999999 778999999999999999999


Q ss_pred             hhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEEE
Q 002736          693 AILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVS  769 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~s  769 (886)
                             +.++.++. |+..|..+.|+|+ +++|+++|.|..+++||+|+.+ .+.++++|++.|+++.|+  ...+|.+
T Consensus       254 -------g~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mk-El~~~r~Hkkdv~~~~WhP~~~~lfts  324 (464)
T KOG0284|consen  254 -------GSCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMK-ELFTYRGHKKDVTSLTWHPLNESLFTS  324 (464)
T ss_pred             -------cchhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhH-HHHHhhcchhhheeeccccccccceee
Confidence                   66666665 4667999999999 7999999999999999999776 499999999999999997  8889999


Q ss_pred             EECCCcEEEEeCCCCCccccCCCceEe-ecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCC
Q 002736          770 ASTDNTLKLWDLSMCTSRVIDTPLHSF-TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFP  832 (886)
Q Consensus       770 gs~Dg~i~lwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~  832 (886)
                      |+.||.|..|.+...      .|+..+ .+|...|++++|+|-|-+||+|+.|.++++|.-..+
T Consensus       325 gg~Dgsvvh~~v~~~------~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  325 GGSDGSVVHWVVGLE------EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             ccCCCceEEEecccc------ccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            999999999999844      333333 479999999999999999999999999999976544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-32  Score=290.00  Aligned_cols=283  Identities=20%  Similarity=0.273  Sum_probs=246.2

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      +..|+..|.++.|+|....++++-.+|.+.||+.++..-       ........-+|.+..|-+ -++.+++|+.|+.|+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------VksfeV~~~PvRa~kfia-RknWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------VKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIR   80 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-------eeeeeecccchhhheeee-ccceEEEecCCceEE
Confidence            345899999999999999999999999999999987311       111123566888888887 589999999999999


Q ss_pred             EEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCCC
Q 002736          644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDSG  722 (886)
Q Consensus       644 iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~  722 (886)
                      |++..|++.+..|..|.+-|.++..+| ...+++|+|+|-+|++||....      -.+.+++.+ ...|.+|+|+|.+.
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~------wa~~qtfeGH~HyVMqv~fnPkD~  153 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE------WACEQTFEGHEHYVMQVAFNPKDP  153 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCc------eeeeeEEcCcceEEEEEEecCCCc
Confidence            999999999999999999999999999 6669999999999999999873      445566654 45699999999999


Q ss_pred             cEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec---CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC
Q 002736          723 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV---DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       723 ~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~---~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h  799 (886)
                      +.+|++|-|++|++|.+.... |..++.+|.+.|+||.|.   |..+|+||+.|.+|+|||..+.      .+++++.||
T Consensus       154 ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------~CV~TLeGH  226 (794)
T KOG0276|consen  154 NTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------SCVQTLEGH  226 (794)
T ss_pred             cceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH------HHHHHhhcc
Confidence            999999999999999999887 699999999999999996   4459999999999999999987      459999999


Q ss_pred             CCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCC
Q 002736          800 TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN  879 (886)
Q Consensus       800 ~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~  879 (886)
                      ++.|.++.|+|.=.+|+|||+||+|+||+..+-+...++.++-             +.|+||+-.+.+. .++.|.+.|.
T Consensus       227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl-------------eRvW~I~~~k~~~-~i~vG~Deg~  292 (794)
T KOG0276|consen  227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL-------------ERVWCIAAHKGDG-KIAVGFDEGS  292 (794)
T ss_pred             cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC-------------ceEEEEeecCCCC-eEEEeccCCc
Confidence            9999999999999999999999999999988876666555533             3599999998888 7888888887


Q ss_pred             EEE
Q 002736          880 IKI  882 (886)
Q Consensus       880 I~i  882 (886)
                      |.|
T Consensus       293 i~v  295 (794)
T KOG0276|consen  293 VTV  295 (794)
T ss_pred             EEE
Confidence            754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.4e-31  Score=281.21  Aligned_cols=283  Identities=28%  Similarity=0.430  Sum_probs=244.8

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      +.+|.++|++++|+|++++|++++.++.|++|++....       .......|...+.++.|++ +++.+++++.||.|+
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~   76 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIR   76 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEE
Confidence            45799999999999999999999999999999987531       1223345777888999998 568999999999999


Q ss_pred             EEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCC
Q 002736          644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSG  722 (886)
Q Consensus       644 iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~  722 (886)
                      +||+.+++....+..|...+.++.|+| ++.++++++.||.|.+||+++       ......+. +...+.+++|+|+ +
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~-~  147 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVET-------GKCLTTLRGHTDWVNSVAFSPD-G  147 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCC-------cEEEEEeccCCCcEEEEEEcCc-C
Confidence            999999888888989999999999998 678888888899999999987       45555555 5567999999999 7


Q ss_pred             cEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCC
Q 002736          723 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN  801 (886)
Q Consensus       723 ~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~  801 (886)
                      .++++++.|+.|++||+++.+ ++..+..|...|.++.|+ ++..+++++.|+.|++||++..      .++..+.+|..
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~  220 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHEN  220 (289)
T ss_pred             CEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC------ceecchhhcCC
Confidence            888888889999999999776 477888999999999997 7779999999999999999876      44677778999


Q ss_pred             ceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEE
Q 002736          802 VKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIK  881 (886)
Q Consensus       802 ~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~  881 (886)
                      .+.++.|+|++.++++++.|+.|++|++..++++..+.             .|...|.+++|+|++. .|++++.||.|+
T Consensus       221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~-~l~~~~~d~~i~  286 (289)
T cd00200         221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-------------GHTNSVTSLAWSPDGK-RLASGSADGTIR  286 (289)
T ss_pred             ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-------------ccCCcEEEEEECCCCC-EEEEecCCCeEE
Confidence            99999999999999999999999999998877665443             3445799999999999 999999999999


Q ss_pred             EEE
Q 002736          882 ILE  884 (886)
Q Consensus       882 iw~  884 (886)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-33  Score=273.43  Aligned_cols=197  Identities=20%  Similarity=0.231  Sum_probs=159.6

Q ss_pred             ccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcc
Q 002736           34 HGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSC  112 (886)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~N  112 (886)
                      ...||+++++-.    .-.+....|+++|+ .|++|..-|-+. ..+++..+-++++||+++|+|+|.+||||||+||+|
T Consensus        66 ~LqHP~IvrL~~----ti~~~~~~ylvFe~m~G~dl~~eIV~R-~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~n  140 (355)
T KOG0033|consen   66 KLQHPNIVRLHD----SIQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILEALAYCHSNGIVHRDLKPEN  140 (355)
T ss_pred             hcCCCcEeehhh----hhcccceeEEEEecccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhh
Confidence            356777777555    22245667888888 999987766333 457999999999999999999999999999999999


Q ss_pred             eeeccC---CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          113 FVMSSF---NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       113 Ill~~~---~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      +||.+.   --+|++|||++.+.+...                                                     
T Consensus       141 llLASK~~~A~vKL~~FGvAi~l~~g~-----------------------------------------------------  167 (355)
T KOG0033|consen  141 LLLASKAKGAAVKLADFGLAIEVNDGE-----------------------------------------------------  167 (355)
T ss_pred             eeeeeccCCCceeecccceEEEeCCcc-----------------------------------------------------
Confidence            999643   359999999997654111                                                     


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            .....+|||.|||||++...+|+..+|||+.|||||-||.  
T Consensus       168 --------------------------------------~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~  209 (355)
T KOG0033|consen  168 --------------------------------------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY  209 (355)
T ss_pred             --------------------------------------ccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCC
Confidence                                                  1112389999999999999999999999999999999998  


Q ss_pred             -CCCCCchhhHHhHhhccC---CCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHR---VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                       ||. ++...+.+..+...   ..++.|....+.+++|+.+||..||.+|+|+.|+|+|||+..
T Consensus       210 ~PF~-~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~  272 (355)
T KOG0033|consen  210 PPFW-DEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICN  272 (355)
T ss_pred             CCCC-CccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcc
Confidence             665 44445555555543   345688899999999999999999999999999999999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-32  Score=296.35  Aligned_cols=311  Identities=16%  Similarity=0.254  Sum_probs=262.5

Q ss_pred             ccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEe
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFD-RDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~-~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~  614 (886)
                      .+.-..|..+.++|..++++...+     .|-.+.|.+++|- |+.+++|.|+..+.+|+|++.+...        ....
T Consensus       296 ~l~vtaeQnl~l~d~~~l~i~k~i-----vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------~ii~  362 (775)
T KOG0319|consen  296 LLLVTAEQNLFLYDEDELTIVKQI-----VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------QIIP  362 (775)
T ss_pred             eEEEEccceEEEEEccccEEehhh-----cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce--------EEEe
Confidence            344455777888899998877555     5667788888875 6789999999999999998876422        2556


Q ss_pred             cCCCCeeeEE-EeCCCCCeEEEecCCCcEEEEECCCc----eEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEe
Q 002736          615 ASRSKLSSIC-WNSYIKSQIASSNFEGVVQVWDVSRS----QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS  689 (886)
Q Consensus       615 ~~~~~I~~l~-~~~~~~~~las~s~Dg~V~iWd~~t~----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd  689 (886)
                      +|...|.++. |.  ++.+|+||+.|.+|++|.++.+    -++....+|...|.+|+++......|+++|.|+++++|+
T Consensus       363 GH~e~vlSL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~  440 (775)
T KOG0319|consen  363 GHTEAVLSLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD  440 (775)
T ss_pred             Cchhheeeeeecc--cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence            8999999998 54  4689999999999999977443    245667889999999999875678999999999999999


Q ss_pred             CchhhhhhccCcee----eeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CC
Q 002736          690 INQAILLLHLGVSI----GTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DA  764 (886)
Q Consensus       690 ~~~~~~~~~~~~~~----~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~  764 (886)
                      +........ ....    ....|...|+||+.+|+ ..+||+||.|.+.++|++.+... +.++.||+..|++|.|+ ..
T Consensus       441 l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~n-dkLiAT~SqDktaKiW~le~~~l-~~vLsGH~RGvw~V~Fs~~d  517 (775)
T KOG0319|consen  441 LPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPN-DKLIATGSQDKTAKIWDLEQLRL-LGVLSGHTRGVWCVSFSKND  517 (775)
T ss_pred             CCCcccccc-cceehhhHHHHhhcccccceEecCC-CceEEecccccceeeecccCceE-EEEeeCCccceEEEEecccc
Confidence            987221111 0000    11225678999999999 79999999999999999997774 89999999999999998 77


Q ss_pred             CEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCC
Q 002736          765 TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHAD  844 (886)
Q Consensus       765 ~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~  844 (886)
                      +.++|+|.|.+|+||.+.+.      .++.+|.||++.|.-+.|-.+|..|++++.||.+++|++.+.+++.+       
T Consensus       518 q~laT~SgD~TvKIW~is~f------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t-------  584 (775)
T KOG0319|consen  518 QLLATCSGDKTVKIWSISTF------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT-------  584 (775)
T ss_pred             ceeEeccCCceEEEEEeccc------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh-------
Confidence            89999999999999999998      45999999999999999999999999999999999999999888754       


Q ss_pred             CCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          845 PLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       845 ~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                            .+.|...|+++.-++... +++||+.||.|.+|.
T Consensus       585 ------lD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  585 ------LDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWK  617 (775)
T ss_pred             ------hhhccceeEEEeecCccc-eeEecCCCeEEEEee
Confidence                  467888999999999999 999999999999995

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.3e-34  Score=289.15  Aligned_cols=211  Identities=19%  Similarity=0.243  Sum_probs=165.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+.+..|+|++..=--+-.  .+.+.+|++|||+..+|+.+|..-..++...+++.++.|++.||.|||..+|+|||||
T Consensus       127 niLl~~~H~NIV~vkEVVvG--~~~d~iy~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK  204 (419)
T KOG0663|consen  127 NILLKARHPNIVEVKEVVVG--SNMDKIYIVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLK  204 (419)
T ss_pred             HHHHhcCCCCeeeeEEEEec--cccceeeeeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccc
Confidence            34445568887653331111  2466799999999999999998777889999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|+|++..|.+||+|||+|+.++++-.                                                    
T Consensus       205 ~SNLLm~~~G~lKiaDFGLAR~ygsp~k----------------------------------------------------  232 (419)
T KOG0663|consen  205 TSNLLLSHKGILKIADFGLAREYGSPLK----------------------------------------------------  232 (419)
T ss_pred             hhheeeccCCcEEecccchhhhhcCCcc----------------------------------------------------
Confidence            9999999999999999999988765510                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ..|..+-|.||+|||.+.|.+ |++++|+||+|||+.||+. 
T Consensus       233 --------------------------------------~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~  274 (419)
T KOG0663|consen  233 --------------------------------------PYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQ  274 (419)
T ss_pred             --------------------------------------cCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhc
Confidence                                                  234457899999999999976 9999999999999999999 


Q ss_pred             -CCCCCchhhHHhHhhccC-------C--------------CCh----hh----hc--cChhhHHHHHHccCCCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHR-------V--------------LPP----QL----LL--KFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~-------~--------------~~~----~~----~~--~~~~~~~li~~~L~~dP~~Rps  315 (886)
                       |.+.+.........+...       +              ++.    .+    ..  .+....+|+..+|.+||.+|.|
T Consensus       275 kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~t  354 (419)
T KOG0663|consen  275 KPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRIT  354 (419)
T ss_pred             CCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCcccccc
Confidence             877776555444333210       0              000    01    11  1234569999999999999999


Q ss_pred             HHHHhcCCCCCCCcCch
Q 002736          316 MGELLQSEFLNEPRDSM  332 (886)
Q Consensus       316 ~~eil~h~~~~~~~~~~  332 (886)
                      |.|+|+|+||.+.+.+.
T Consensus       355 A~~~L~h~~F~e~P~p~  371 (419)
T KOG0663|consen  355 AEDGLKHEYFRETPLPI  371 (419)
T ss_pred             HHHhhcccccccCCCCC
Confidence            99999999999866543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-32  Score=276.66  Aligned_cols=265  Identities=21%  Similarity=0.387  Sum_probs=234.5

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecC
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS  616 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~  616 (886)
                      +.+..|+.+++||+.+++..+.|     .+|.+.|.+|+|+..|.++|+++.|-.+++||+++.      ..+.....+|
T Consensus       124 ~~as~d~tikv~D~~tg~~e~~L-----rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh  192 (406)
T KOG0295|consen  124 VSASEDATIKVFDTETGELERSL-----RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGH  192 (406)
T ss_pred             EEecCCceEEEEEccchhhhhhh-----hccccceeEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCc
Confidence            45556999999999999986666     689999999999999999999999999999999762      1222344578


Q ss_pred             CCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhh
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILL  696 (886)
Q Consensus       617 ~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~  696 (886)
                      ...|++++|-| .+++|+|++.|.+|+.|++.++-++.+|.+|...|..++.+. |+.++|+|+.|.+|++|-+.+.   
T Consensus       193 ~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~---  267 (406)
T KOG0295|consen  193 EHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATK---  267 (406)
T ss_pred             ccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccc---
Confidence            88999999999 589999999999999999999999999999999999999995 9999999999999999999984   


Q ss_pred             hccCceeeeee-cCCCeEEEEEeCC--------------CCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEe
Q 002736          697 LHLGVSIGTIK-TKANVCCVQFPLD--------------SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF  761 (886)
Q Consensus       697 ~~~~~~~~~~~-~~~~v~~v~~sp~--------------~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f  761 (886)
                          .+...+. +...|-|++|-|.              ++.++++|+.|++|++||+.++.. +.++.+|...|..++|
T Consensus       268 ----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~af  342 (406)
T KOG0295|consen  268 ----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGVAF  342 (406)
T ss_pred             ----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeeeEE
Confidence                3333333 3456888888663              236899999999999999999985 9999999999999999


Q ss_pred             c-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEe
Q 002736          762 V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       762 ~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd  828 (886)
                      + .|++|+|+..|++|++||+++.      +++.++..|..-|++++|+.+-.|++|||-|.++++|.
T Consensus       343 ~p~Gkyi~ScaDDktlrvwdl~~~------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  343 SPGGKYILSCADDKTLRVWDLKNL------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             cCCCeEEEEEecCCcEEEEEeccc------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            7 8999999999999999999998      45889999999999999999999999999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-32  Score=302.30  Aligned_cols=239  Identities=24%  Similarity=0.389  Sum_probs=213.2

Q ss_pred             CCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCc-------------------------------eEEEEecccCCcEE
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRS-------------------------------QVLTEMREHERRVW  664 (886)
Q Consensus       616 ~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~-------------------------------~~~~~~~~h~~~v~  664 (886)
                      ....++|..|++ +..+||.|-.|..|++|.+...                               ...+++.+|.++|.
T Consensus       377 t~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  377 TYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             cCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            345688889987 6779999999999999987621                               12344779999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC
Q 002736          665 SIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK  743 (886)
Q Consensus       665 ~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~  743 (886)
                      ++.|+| +.++|++||.|++|+||.+.+       ..++-... |..+|++|+|+|. |.+||+||.|++.++|......
T Consensus       456 g~sFsP-d~rfLlScSED~svRLWsl~t-------~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  456 GCSFSP-DRRFLLSCSEDSSVRLWSLDT-------WSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             eeeecc-cccceeeccCCcceeeeeccc-------ceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCC
Confidence            999999 999999999999999999998       45444444 4578999999999 9999999999999999998866


Q ss_pred             cceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCC
Q 002736          744 IPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETN  822 (886)
Q Consensus       744 ~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg  822 (886)
                       |++.+.+|-..|.|++|+ +..+++|||.|.+||+||+.++..      ++.|.||+++|.+|+|||+|+|||+|++||
T Consensus       527 -PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  527 -PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS------VRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             -chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE------EEEecCCCCceEEEEEcCCCceEeecccCC
Confidence             799999999999999997 999999999999999999999854      999999999999999999999999999999


Q ss_pred             cEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          823 EVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       823 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      .|.|||+.++.++..+             .+|.+.|.++.|+.+|. +||+|+.|.+|++||+
T Consensus       600 ~I~iWDl~~~~~v~~l-------------~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQL-------------KGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDL  648 (707)
T ss_pred             cEEEEEcCCCcchhhh-------------hcccCceeEEEEecCCC-EEEecCCCCeEEEEEc
Confidence            9999999999888654             34567899999999999 9999999999999996

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-34  Score=306.75  Aligned_cols=205  Identities=19%  Similarity=0.262  Sum_probs=167.8

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +.+++....|+|+|.++..+-.    .+.++++||| +||+|-+.+.+.  .+++.++..|+++++.||.|||.+|||||
T Consensus       320 Ei~Vm~~~~H~NiVnfl~Sylv----~deLWVVMEym~ggsLTDvVt~~--~~~E~qIA~Icre~l~aL~fLH~~gIiHr  393 (550)
T KOG0578|consen  320 EILVMRDLHHPNIVNFLDSYLV----GDELWVVMEYMEGGSLTDVVTKT--RMTEGQIAAICREILQGLKFLHARGIIHR  393 (550)
T ss_pred             HHHHHHhccchHHHHHHHHhcc----cceeEEEEeecCCCchhhhhhcc--cccHHHHHHHHHHHHHHHHHHHhcceeee
Confidence            4455666788888887773322    3778899999 999999988553  48999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      |||.+|||+..+|.+||+|||+|..+.....                                                 
T Consensus       394 DIKSDnILL~~~g~vKltDFGFcaqi~~~~~-------------------------------------------------  424 (550)
T KOG0578|consen  394 DIKSDNILLTMDGSVKLTDFGFCAQISEEQS-------------------------------------------------  424 (550)
T ss_pred             ccccceeEeccCCcEEEeeeeeeeccccccC-------------------------------------------------
Confidence            9999999999999999999999965532210                                                 


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ...+.+|||+|||||++....|++++||||||+++.||+
T Consensus       425 -----------------------------------------KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMv  463 (550)
T KOG0578|consen  425 -----------------------------------------KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMV  463 (550)
T ss_pred             -----------------------------------------ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHh
Confidence                                                     223359999999999999999999999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCC--hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLP--PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      -   ||.. +....++..+...-.|  ..+...++.+.+|+.+||+.||.+|++|.|+|+||||+...
T Consensus       464 eGEPPYln-E~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~a~  530 (550)
T KOG0578|consen  464 EGEPPYLN-ENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKMAK  530 (550)
T ss_pred             cCCCCccC-CChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhhcC
Confidence            9   6655 4455555555444333  23455788999999999999999999999999999996543

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.3e-33  Score=276.91  Aligned_cols=209  Identities=16%  Similarity=0.205  Sum_probs=170.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .|-...|+|++++.. +   ....+.+.++.||...+|...|+.....++..+++.|+.+++.||+|||++.|+||||||
T Consensus        54 ~Lqel~h~nIi~LiD-~---F~~~~~l~lVfEfm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKP  129 (318)
T KOG0659|consen   54 LLQELKHPNIIELID-V---FPHKSNLSLVFEFMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKP  129 (318)
T ss_pred             HHHHccCcchhhhhh-h---ccCCCceEEEEEeccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCc
Confidence            334456888887766 2   235677899999999999999988888999999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      .|+||+++|.+|++|||+++.++....                                                     
T Consensus       130 nNLLis~~g~lKiADFGLAr~f~~p~~-----------------------------------------------------  156 (318)
T KOG0659|consen  130 NNLLISSDGQLKIADFGLARFFGSPNR-----------------------------------------------------  156 (318)
T ss_pred             cceEEcCCCcEEeecccchhccCCCCc-----------------------------------------------------
Confidence            999999999999999999988765421                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ..+..+-|.||+|||.+.|.. |+..+||||.|||+.||+-  
T Consensus       157 -------------------------------------~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~  199 (318)
T KOG0659|consen  157 -------------------------------------IQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRV  199 (318)
T ss_pred             -------------------------------------ccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccC
Confidence                                                 111126699999999999965 9999999999999999998  


Q ss_pred             CCCCCchhhHHhHhhccC----------------------CCCh-----hhhccChhhHHHHHHccCCCCCCCCCHHHHh
Q 002736          268 PFSTGEEKTRTMSSLRHR----------------------VLPP-----QLLLKFPKEASFCLWLLHPEPSGRPKMGELL  320 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~----------------------~~~~-----~~~~~~~~~~~li~~~L~~dP~~Rps~~eil  320 (886)
                      ||+.++.....+..+...                      .+|.     .+...+.++.+|+.+||.+||.+|+++.|+|
T Consensus       200 P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL  279 (318)
T KOG0659|consen  200 PFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQAL  279 (318)
T ss_pred             CCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHh
Confidence            999888777666544321                      1111     1223445667999999999999999999999


Q ss_pred             cCCCCCCCcCchH
Q 002736          321 QSEFLNEPRDSME  333 (886)
Q Consensus       321 ~h~~~~~~~~~~~  333 (886)
                      +|+||...+.+..
T Consensus       280 ~~~yf~~~P~pt~  292 (318)
T KOG0659|consen  280 KHPYFKSLPLPTP  292 (318)
T ss_pred             cchhhhcCCCCCC
Confidence            9999997655443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-31  Score=260.69  Aligned_cols=241  Identities=25%  Similarity=0.372  Sum_probs=209.1

Q ss_pred             EEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECC-----CceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEE
Q 002736          612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS-----RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVK  686 (886)
Q Consensus       612 ~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~-----t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~  686 (886)
                      ...+|.+.|..++..+...+++++++.|.++.+|++.     .|.+++.+.+|...|..+..++ ++++.++++.|++++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lr   88 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLR   88 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEE
Confidence            3457999999999999889999999999999999875     3567899999999999999998 999999999999999


Q ss_pred             EEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEec--CCCCeEEEEec-
Q 002736          687 LWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIG--HNKTVSYVKFV-  762 (886)
Q Consensus       687 lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~--h~~~V~~v~f~-  762 (886)
                      +||+.+       +.....+. |...|.+|+|+|+ ...+++||.|.+|.+|++-...  ..++..  |+..|++|+|+ 
T Consensus        89 lWDl~~-------g~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   89 LWDLAT-------GESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             EEEecC-------CcEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcC
Confidence            999999       66555555 4567999999999 7889999999999999987654  444443  38899999997 


Q ss_pred             --CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeecc
Q 002736          763 --DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNF  840 (886)
Q Consensus       763 --~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~  840 (886)
                        +..+|+++|.|++|++||+++.      +...++.||++.++.|.+||||..+|+|+.||++.+||++.++.+.++. 
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-  231 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-  231 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-
Confidence              3679999999999999999987      4578899999999999999999999999999999999999998876553 


Q ss_pred             CCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          841 NHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       841 ~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                                   +...|.++||+|+-. .|+++-.. .|+||++
T Consensus       232 -------------a~~~v~sl~fspnry-wL~~at~~-sIkIwdl  261 (315)
T KOG0279|consen  232 -------------AFDIVNSLCFSPNRY-WLCAATAT-SIKIWDL  261 (315)
T ss_pred             -------------CCCeEeeEEecCCce-eEeeccCC-ceEEEec
Confidence                         456799999999987 55555444 5999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-31  Score=292.69  Aligned_cols=314  Identities=22%  Similarity=0.266  Sum_probs=248.4

Q ss_pred             ccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEEcCcccCcccccccceEE
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDG--ELFAAAGVNKKIKVFECDAIINENRDIHYPVVE  613 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~--~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~  613 (886)
                      ..+|..||.++|||+..+-+...+     .+|.+.|+++.|+|+-  .+|++|+.|+.+++||+.+...      .....
T Consensus       120 lAtggaD~~v~VWdi~~~~~th~f-----kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------cl~~~  188 (775)
T KOG0319|consen  120 LATGGADGRVKVWDIKNGYCTHSF-----KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------CLHTM  188 (775)
T ss_pred             EEeccccceEEEEEeeCCEEEEEe-----cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------HHHHH
Confidence            467889999999999999988777     6899999999999965  4689999999999999985211      12223


Q ss_pred             ecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECC---------------------------------------------
Q 002736          614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS---------------------------------------------  648 (886)
Q Consensus       614 ~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~---------------------------------------------  648 (886)
                      ..|.+.|++++|.+ ++..+++++.|..+.|||+.                                             
T Consensus       189 ~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~  267 (775)
T KOG0319|consen  189 ILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS  267 (775)
T ss_pred             Hhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence            35778888888877 35555555556666666542                                             


Q ss_pred             -CceEEE-------------------------------------------------------------------------
Q 002736          649 -RSQVLT-------------------------------------------------------------------------  654 (886)
Q Consensus       649 -t~~~~~-------------------------------------------------------------------------  654 (886)
                       +++++.                                                                         
T Consensus       268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~  347 (775)
T KOG0319|consen  268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE  347 (775)
T ss_pred             ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence             211100                                                                         


Q ss_pred             ------------EecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeee-eecCCCeEEEEEeCCC
Q 002736          655 ------------EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGT-IKTKANVCCVQFPLDS  721 (886)
Q Consensus       655 ------------~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~  721 (886)
                                  .+.+|+..|.+++... ++.+|+||+.|.++++|.++.....   ..+++. ..|...|.+|+++..+
T Consensus       348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~---~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  348 LRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSK---SLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             eEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcch---hhhhhhhcccccccceeeecccC
Confidence                        0356778888888442 6789999999999999988442110   112222 2356679999998887


Q ss_pred             CcEEEEEeCCCeEEEEecCCCC----cceE----EEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCC
Q 002736          722 GRSLAFGSADHRIYYYDLRNSK----IPLC----TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTP  792 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~----~~~~----~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  792 (886)
                      ...|+++|.|.++++|++...+    .++.    +...|.+.|++|+++ +..+++|||.|.+.+||++...      ..
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------~l  497 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------RL  497 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc------eE
Confidence            7899999999999999998722    1122    345899999999997 8889999999999999999965      56


Q ss_pred             ceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEE
Q 002736          793 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLV  872 (886)
Q Consensus       793 ~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~  872 (886)
                      +.++.||+..|++|.|+|.++.+||+|.|.+|+||.+.+..++.+|             ++|...|..+.|-.++. .|+
T Consensus       498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-------------eGH~~aVlra~F~~~~~-qli  563 (775)
T KOG0319|consen  498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-------------EGHTSAVLRASFIRNGK-QLI  563 (775)
T ss_pred             EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-------------cCccceeEeeeeeeCCc-EEE
Confidence            8999999999999999999999999999999999999998887654             56778899999999999 999


Q ss_pred             EEeCCCCEEEEEe
Q 002736          873 AANSSGNIKILEM  885 (886)
Q Consensus       873 s~~~dg~I~iw~l  885 (886)
                      +|++||.||+|++
T Consensus       564 S~~adGliKlWni  576 (775)
T KOG0319|consen  564 SAGADGLIKLWNI  576 (775)
T ss_pred             eccCCCcEEEEec
Confidence            9999999999986

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=4.7e-33  Score=289.14  Aligned_cols=268  Identities=17%  Similarity=0.156  Sum_probs=187.8

Q ss_pred             ccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhccc
Q 002736           24 RKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      |-+.+.-.|+..+||=.+.+|.    .....+.+|++||| .||+|..++++ +++.+++..++.|+..|+.||+|||-+
T Consensus       123 Ra~tE~eIL~~lDHPFlPTLYa----~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHml  198 (459)
T KOG0610|consen  123 RAQTEREILSLLDHPFLPTLYA----SFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHML  198 (459)
T ss_pred             HHHHHHHHHHhcCCCccchhhh----eeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence            5556667788899999999888    33345778999999 89999998854 467899999999999999999999999


Q ss_pred             CeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhc-ccccccccccCCCCc
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTR-LRREDLQLVTAPTND  180 (886)
Q Consensus       102 giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~  180 (886)
                      |||.|||||+||||.++|||.+.||-++........  ..     .    +++.+......+.+ ....-|.+.......
T Consensus       199 GivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt--~~-----~----s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~  267 (459)
T KOG0610|consen  199 GIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPT--LV-----K----SSSPRSSGSQPSCRSRQPSCFSPRCLSSSK  267 (459)
T ss_pred             ceeeccCCcceeEEecCCcEEeeeccccccCCCCCe--ee-----c----cCCCCCCCCCcccccccccccccchhcccc
Confidence            999999999999999999999999999865421100  00     0    00000000000000 001111111000000


Q ss_pred             cccccccccCCccCcccccccCccccccccc---ccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccch
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDN---RVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwS  257 (886)
                      .              +.         | .|.   +...+...+..   ..+....+||-.|.|||++.|..-+.++|+|+
T Consensus       268 ~--------------~~---------k-~~~~~~~~~p~~~aep~---~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWt  320 (459)
T KOG0610|consen  268 K--------------RK---------K-KDESASRSLPELVAEPT---GARSNSFVGTHEYLAPEVIRGEGHGSAVDWWT  320 (459)
T ss_pred             c--------------cc---------c-ccccccccchhhhcCCC---CccccccccccccccceeeecCCCCchhhHHH
Confidence            0              00         0 000   00000000000   11233469999999999999999999999999


Q ss_pred             HHHHHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC----HHHHhcCCCCCCCcC
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK----MGELLQSEFLNEPRD  330 (886)
Q Consensus       258 lGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps----~~eil~h~~~~~~~~  330 (886)
                      |||+|||||.   ||.+...+......+.+....|.....+..+++||.++|.+||++|..    |.||.+||||++...
T Consensus       321 fGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnW  400 (459)
T KOG0610|consen  321 FGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNW  400 (459)
T ss_pred             HHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCCh
Confidence            9999999998   998888877777777766655555567788999999999999999988    999999999999876


Q ss_pred             chH
Q 002736          331 SME  333 (886)
Q Consensus       331 ~~~  333 (886)
                      .+.
T Consensus       401 aLi  403 (459)
T KOG0610|consen  401 ALI  403 (459)
T ss_pred             hhe
Confidence            543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-31  Score=253.90  Aligned_cols=278  Identities=23%  Similarity=0.345  Sum_probs=232.7

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      +..|+++|..+.|+.||+|.+|+|.|++||+|+.....       .....-+|...|..++.+. +...+++|+.|..|.
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~   84 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQ   84 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccc-cccccccCCCCceEE
Confidence            35689999999999999999999999999999976431       1222345788899988876 688999999999999


Q ss_pred             EEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCCC
Q 002736          644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDSG  722 (886)
Q Consensus       644 iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~  722 (886)
                      +||+.||+..+.+.+|.+.|+.+.|+. +...+++|+-|.++++||.++..     ..+++.+.. ...|.+|..+   +
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s-----~ePiQildea~D~V~Si~v~---~  155 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS-----FEPIQILDEAKDGVSSIDVA---E  155 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCC-----CCccchhhhhcCceeEEEec---c
Confidence            999999999999999999999999996 88999999999999999999854     556666654 6779999987   5


Q ss_pred             cEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCC
Q 002736          723 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN  801 (886)
Q Consensus       723 ~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~  801 (886)
                      +.|++||.||+++.||+|.+.. ..-..+  .+|++++|+ +++..+.++.|++|++-|-.++      +.+.+++||.+
T Consensus       156 heIvaGS~DGtvRtydiR~G~l-~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG------klL~sYkGhkn  226 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTL-SSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG------KLLKSYKGHKN  226 (307)
T ss_pred             cEEEeeccCCcEEEEEeeccee-ehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh------HHHHHhccccc
Confidence            6899999999999999998874 333334  579999998 9999999999999999999988      56999999988


Q ss_pred             c--eeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCC
Q 002736          802 V--KNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN  879 (886)
Q Consensus       802 ~--v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~  879 (886)
                      .  ...++++.....+++||+||.|++||+-....+..+.....            -.|.+++++|... -|++|...+.
T Consensus       227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~------------v~v~dl~~hp~~~-~f~~A~~~~~  293 (307)
T KOG0316|consen  227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST------------VIVTDLSCHPTMD-DFITATGHGD  293 (307)
T ss_pred             ceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc------------eeEEeeecccCcc-ceeEecCCce
Confidence            5  44556777788999999999999999998887765543221            1289999999998 7777766654


Q ss_pred             E
Q 002736          880 I  880 (886)
Q Consensus       880 I  880 (886)
                      +
T Consensus       294 ~  294 (307)
T KOG0316|consen  294 L  294 (307)
T ss_pred             e
Confidence            3

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.5e-31  Score=266.87  Aligned_cols=304  Identities=16%  Similarity=0.249  Sum_probs=259.4

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecC
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS  616 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~  616 (886)
                      ++|..|.+..+|+.++++...++     .+|+..|+++.|+.||.+||||+.+|.|+||+..+...     ..  .....
T Consensus        80 aTGGgDD~AflW~~~~ge~~~el-----tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-----~~--~~~~e  147 (399)
T KOG0296|consen   80 ATGGGDDLAFLWDISTGEFAGEL-----TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-----QW--KLDQE  147 (399)
T ss_pred             EecCCCceEEEEEccCCcceeEe-----cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-----EE--Eeecc
Confidence            66788999999999999976665     78999999999999999999999999999999876311     11  11134


Q ss_pred             CCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhh
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILL  696 (886)
Q Consensus       617 ~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~  696 (886)
                      -..|.-+.|+| ...+|+.|+.||.|.+|.+..+...+.+.+|..++++=.|.| +|..+++|.+||+|++||..+    
T Consensus       148 ~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~kt----  221 (399)
T KOG0296|consen  148 VEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKT----  221 (399)
T ss_pred             cCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCC----
Confidence            56788899999 799999999999999999999888889999999999999999 899999999999999999999    


Q ss_pred             hccCceeeeeec--CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEe--------cCCCCeEEEEec----
Q 002736          697 LHLGVSIGTIKT--KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI--------GHNKTVSYVKFV----  762 (886)
Q Consensus       697 ~~~~~~~~~~~~--~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~--------~h~~~V~~v~f~----  762 (886)
                         +.++..+..  .....|+.++.. +..++.|+.++.+++....+++. +....        .|...+.+|.|.    
T Consensus       222 ---g~p~~~~~~~e~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKV-v~~~n~~~~~l~~~~e~~~esve~~~~ss  296 (399)
T KOG0296|consen  222 ---GQPLHKITQAEGLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKV-VNCNNGTVPELKPSQEELDESVESIPSSS  296 (399)
T ss_pred             ---CceeEEecccccCcCCccccccc-cceeEeccCCccEEEEccccceE-EEecCCCCccccccchhhhhhhhhccccc
Confidence               777766653  345789999988 88999999999999988877764 33333        455666677663    


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCC
Q 002736          763 DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNH  842 (886)
Q Consensus       763 ~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~  842 (886)
                      .-.+.|+|+-||+|.|||+....       ++....|...|..+.|-+ ..+|++++.||.|+.||.+++..+..+    
T Consensus       297 ~lpL~A~G~vdG~i~iyD~a~~~-------~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y----  364 (399)
T KOG0296|consen  297 KLPLAACGSVDGTIAIYDLAAST-------LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY----  364 (399)
T ss_pred             ccchhhcccccceEEEEecccch-------hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE----
Confidence            45678899999999999998864       566777999999999998 789999999999999999999877554    


Q ss_pred             CCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          843 ADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       843 ~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                               .+|...|.+++.+|+.+ .++|++.|++.+||++
T Consensus       365 ---------~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  365 ---------TGHQMGILDFALSPQKR-LVVTVSDDNTALVFEV  397 (399)
T ss_pred             ---------ecCchheeEEEEcCCCc-EEEEecCCCeEEEEec
Confidence                     46778899999999999 9999999999999975

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.4e-31  Score=270.50  Aligned_cols=270  Identities=23%  Similarity=0.405  Sum_probs=231.6

Q ss_pred             ccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEEcCcccCcccccccc
Q 002736          534 SGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGE---LFAAAGVNKKIKVFECDAIINENRDIHYP  610 (886)
Q Consensus       534 ~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~---~lat~~~d~~Ikiwd~~~~~~~~~~~~~~  610 (886)
                      ...++|.+||.+++|+.+ |++...+     .+|.++|.+++|.-..+   .|++||.|.+|++|.++..........  
T Consensus       116 ~~IltgsYDg~~riWd~~-Gk~~~~~-----~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~--  187 (423)
T KOG0313|consen  116 KWILTGSYDGTSRIWDLK-GKSIKTI-----VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK--  187 (423)
T ss_pred             ceEEEeecCCeeEEEecC-CceEEEE-----ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh--
Confidence            345889999999999954 6766555     68999999988875433   599999999999999876433222111  


Q ss_pred             eEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCC-------------------------ceEEEEecccCCcEEE
Q 002736          611 VVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSR-------------------------SQVLTEMREHERRVWS  665 (886)
Q Consensus       611 ~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t-------------------------~~~~~~~~~h~~~v~~  665 (886)
                       ...+|...|-+|+.++ ++..++||++|.+++||+..+                         +.++..+.+|..+|.+
T Consensus       188 -~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~  265 (423)
T KOG0313|consen  188 -VCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS  265 (423)
T ss_pred             -HhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence             2238999999999998 799999999999999999321                         2345667899999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC--
Q 002736          666 IDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK--  743 (886)
Q Consensus       666 v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~--  743 (886)
                      |.|++  ...+.+++.|.+|+.||+.+       +..+.++..+..++|+.++|. .++|++|+.|..+++||.|++.  
T Consensus       266 V~w~d--~~v~yS~SwDHTIk~WDlet-------g~~~~~~~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  266 VVWSD--ATVIYSVSWDHTIKVWDLET-------GGLKSTLTTNKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             EEEcC--CCceEeecccceEEEEEeec-------ccceeeeecCcceeEeecccc-cceeeecCCCCceeecCCCCCCCc
Confidence            99994  88999999999999999999       888888888999999999998 8999999999999999999864  


Q ss_pred             cceEEEecCCCCeEEEEec--CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCC
Q 002736          744 IPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSET  821 (886)
Q Consensus       744 ~~~~~~~~h~~~V~~v~f~--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~D  821 (886)
                      .+..++.+|...|.+|+|+  +...|+||+.|+++++||+++..     .|+..+.+|...|.++.|+ .+.+|++||.|
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k-----~plydI~~h~DKvl~vdW~-~~~~IvSGGaD  409 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK-----APLYDIAGHNDKVLSVDWN-EGGLIVSGGAD  409 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC-----CcceeeccCCceEEEEecc-CCceEEeccCc
Confidence            4567899999999999997  77899999999999999999985     4899999999999999997 46799999999


Q ss_pred             CcEEEEec
Q 002736          822 NEVFVYHK  829 (886)
Q Consensus       822 g~v~iwd~  829 (886)
                      ++|+|+.-
T Consensus       410 ~~l~i~~~  417 (423)
T KOG0313|consen  410 NKLRIFKG  417 (423)
T ss_pred             ceEEEecc
Confidence            99999964

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=275.82  Aligned_cols=282  Identities=18%  Similarity=0.330  Sum_probs=234.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEE
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd  646 (886)
                      ....|+|+.++  .+.+++|..|++|+|||..+.       ......++|.+.|.|+.|.   ...|+||+.|.+|+|||
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~-------~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWD  263 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL-------ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWD  263 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccH-------HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEe
Confidence            36689999886  458999999999999998763       2233456899999999986   45999999999999999


Q ss_pred             CCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEE
Q 002736          647 VSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLA  726 (886)
Q Consensus       647 ~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~  726 (886)
                      +++++++.++-+|...|..+.|+   ..++++||.|.++.+||+..+....-..   -...|.+.|+.|+|+   .++++
T Consensus       264 v~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rr---VLvGHrAaVNvVdfd---~kyIV  334 (499)
T KOG0281|consen  264 VNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRR---VLVGHRAAVNVVDFD---DKYIV  334 (499)
T ss_pred             ccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHH---HHhhhhhheeeeccc---cceEE
Confidence            99999999999999999999997   4699999999999999998754221100   012356889999997   56999


Q ss_pred             EEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEE
Q 002736          727 FGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFV  806 (886)
Q Consensus       727 ~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v  806 (886)
                      ++|.|.+|++|++.+... +.++.+|...|.|+.| .+.+++|||.|.+|++||+..+      .+++.+.||..-|.++
T Consensus       335 sASgDRTikvW~~st~ef-vRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~~G------~cLRvLeGHEeLvRci  406 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCI  406 (499)
T ss_pred             EecCCceEEEEeccceee-ehhhhcccccceehhc-cCeEEEecCCCceEEEEecccc------HHHHHHhchHHhhhhe
Confidence            999999999999999885 9999999999999887 5889999999999999999998      4599999999999999


Q ss_pred             EEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEeC
Q 002736          807 GLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV  886 (886)
Q Consensus       807 ~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l~  886 (886)
                      .|  +.+.|++|++||+|+|||+..+......    ...+.-.....|.+.|..+.|.  .. .+++++.|.+|-||+++
T Consensus       407 RF--d~krIVSGaYDGkikvWdl~aaldpra~----~~~~Cl~~lv~hsgRVFrLQFD--~f-qIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  407 RF--DNKRIVSGAYDGKIKVWDLQAALDPRAP----ASTLCLRTLVEHSGRVFRLQFD--EF-QIISSSHDDTILIWDFL  477 (499)
T ss_pred             ee--cCceeeeccccceEEEEecccccCCccc----ccchHHHhhhhccceeEEEeec--ce-EEEeccCCCeEEEEEcC
Confidence            99  5789999999999999999876433211    1112223346788899999996  34 79999999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.2e-31  Score=299.22  Aligned_cols=285  Identities=26%  Similarity=0.414  Sum_probs=244.3

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEE
Q 002736          566 NSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVW  645 (886)
Q Consensus       566 ~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iW  645 (886)
                      .|...|+++.|+++|+.+++++.++.|++|+......  .   ......+|...|++++|+| ++.++++++.|++|+||
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~---~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--N---LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--h---hhccccccccceeeeEECC-CCcEEEEecCCceEEEe
Confidence            3588999999999999999999999999999854321  0   1111257999999999999 78899999999999999


Q ss_pred             EC-CCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCCCc
Q 002736          646 DV-SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDSGR  723 (886)
Q Consensus       646 d~-~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~  723 (886)
                      |+ ..+..++.+++|...|++++|+| .++++++|+.|++|+|||+++       +.++..+.. ...|.+++|+++ ++
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~-------~~~~~~l~~hs~~is~~~f~~d-~~  301 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRT-------GECVRKLKGHSDGISGLAFSPD-GN  301 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccC-------CeEEEeeeccCCceEEEEECCC-CC
Confidence            99 55588999999999999999999 679999999999999999999       777777775 457999999999 89


Q ss_pred             EEEEEeCCCeEEEEecCCCCc-ceEEEecCCCC--eEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC
Q 002736          724 SLAFGSADHRIYYYDLRNSKI-PLCTLIGHNKT--VSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       724 ~l~~gs~Dg~I~vwDlr~~~~-~~~~~~~h~~~--V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h  799 (886)
                      +|++++.|+.|++||+.++.. ++..+.++...  +++++|+ ++.+|++++.|+++++||++...      .+..+.+|
T Consensus       302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~------~~~~~~~~  375 (456)
T KOG0266|consen  302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK------SVGTYTGH  375 (456)
T ss_pred             EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc------ceeeeccc
Confidence            999999999999999999874 25667777666  9999997 99999999999999999999874      47888999


Q ss_pred             CCce---eEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccC-CCcEEEEEEccCCCcEEEEEe
Q 002736          800 TNVK---NFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDA-AQFISSVCWRGQSSNTLVAAN  875 (886)
Q Consensus       800 ~~~v---~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~v~~s~~~~~~l~s~~  875 (886)
                      .+.+   .+...++.+.++.+|+.|+.|++|+..++..+..+             .+| ...|..+.|+|..+ ++++++
T Consensus       376 ~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-------------~~h~~~~~~~~~~~~~~~-~~~s~s  441 (456)
T KOG0266|consen  376 SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-------------EGHSKAAVSDLSSHPTEN-LIASSS  441 (456)
T ss_pred             CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-------------cCCCCCceeccccCCCcC-eeeecC
Confidence            8853   34455778999999999999999999987666443             334 56799999999999 899888


Q ss_pred             --CCCCEEEEEe
Q 002736          876 --SSGNIKILEM  885 (886)
Q Consensus       876 --~dg~I~iw~l  885 (886)
                        .|+.|++|..
T Consensus       442 ~~~d~~~~~w~~  453 (456)
T KOG0266|consen  442 FEGDGLIRLWKY  453 (456)
T ss_pred             cCCCceEEEecC
Confidence              7999999963

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.4e-32  Score=283.98  Aligned_cols=290  Identities=16%  Similarity=0.239  Sum_probs=239.5

Q ss_pred             cccCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCc
Q 002736          563 DLLNSSNLVCSLSFDR-DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGV  641 (886)
Q Consensus       563 ~~~~h~~~V~sl~f~~-d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~  641 (886)
                      .+.+|...|+++.|.| .+.+|+++|.|++|+||++..      +....-..++|..+|.+++|++ .+..++|+++|+.
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~------~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD------DRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF  281 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEec------Ccceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence            4578999999999999 899999999999999999875      2233334568999999999998 7999999999999


Q ss_pred             EEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCC
Q 002736          642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLD  720 (886)
Q Consensus       642 V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~  720 (886)
                      |++||++||+++..|. -...++|+.|+|.+.+.+++|+.|+.|+.||++++.       .++.+. +-+.|..+.|-++
T Consensus       282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-------vvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-------VVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-------HHHHHHhhhhheeeeEEccC
Confidence            9999999999998885 356789999999777999999999999999999954       344443 3457999999999


Q ss_pred             CCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC
Q 002736          721 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       721 ~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h  799 (886)
                       +..+++.+.|+++++|+.+.+-........+.-...+|..+ ++.+++.=+.|+.|.++.+...-.   ......|.||
T Consensus       354 -g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh  429 (503)
T KOG0282|consen  354 -GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGH  429 (503)
T ss_pred             -CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc---cCHhhhhcce
Confidence             89999999999999999987753222222233345566665 899999999999999999764321   1335678899


Q ss_pred             CCc--eeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCC
Q 002736          800 TNV--KNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSS  877 (886)
Q Consensus       800 ~~~--v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~d  877 (886)
                      ...  -..|.|||||.+|++|+.||.+.+||..+.+.+..+             ..|++.|..+.|+|..+..|||++.|
T Consensus       430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-------------kah~~~ci~v~wHP~e~Skvat~~w~  496 (503)
T KOG0282|consen  430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-------------KAHDQPCIGVDWHPVEPSKVATCGWD  496 (503)
T ss_pred             eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-------------ccCCcceEEEEecCCCcceeEecccC
Confidence            754  456799999999999999999999999987766433             45678899999999987789999999


Q ss_pred             CCEEEEE
Q 002736          878 GNIKILE  884 (886)
Q Consensus       878 g~I~iw~  884 (886)
                      |.|++|+
T Consensus       497 G~Ikiwd  503 (503)
T KOG0282|consen  497 GLIKIWD  503 (503)
T ss_pred             ceeEecC
Confidence            9999996

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.7e-33  Score=286.98  Aligned_cols=219  Identities=21%  Similarity=0.294  Sum_probs=167.4

Q ss_pred             CcccccccCceeecccccccCCCCCCccccccc---cCCceEEEEeeCCcchhhhhcCCC---CCcChHHHHHHHHHHHH
Q 002736           20 DFELRKHSDGVELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPK---RSVDVYECLHIFRQIVE   93 (886)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~e~~g~sL~~~l~~~~---~~l~~~~~~~i~~qi~~   93 (886)
                      ....|+..-...+.|.+|  ++.+++ ++..+.   ....+++++||...+|..+|+...   ..++...++.+++||+.
T Consensus        55 ~taiREisllk~L~~~~~--iv~L~d-v~~~~~~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~  131 (323)
T KOG0594|consen   55 STAIREISLLKRLSHANH--IVRLHD-VIHTSNNHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLR  131 (323)
T ss_pred             chhhHHHHHHHHhCCCcc--eEEEEe-eeeecccccccceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence            344566666667777776  666666 554332   234789999999999999997654   35788999999999999


Q ss_pred             HHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhccccccccc
Q 002736           94 IVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQL  173 (886)
Q Consensus        94 ~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  173 (886)
                      ||+|||++||+||||||+||||+++|.+|++|||+|+.++-+.-                                    
T Consensus       132 gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~------------------------------------  175 (323)
T KOG0594|consen  132 GLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMR------------------------------------  175 (323)
T ss_pred             HHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHHhcCCcc------------------------------------
Confidence            99999999999999999999999999999999999964432210                                    


Q ss_pred             ccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcc
Q 002736          174 VTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCA  252 (886)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~  252 (886)
                                                                            ..+..++|.||+|||++.|. .|++.
T Consensus       176 ------------------------------------------------------~yt~evvTlWYRaPEvLlGs~~Ys~~  201 (323)
T KOG0594|consen  176 ------------------------------------------------------TYTPEVVTLWYRAPEVLLGSTSYSTS  201 (323)
T ss_pred             ------------------------------------------------------cccccEEEeeccCHHHhcCCCcCCCC
Confidence                                                                  12334889999999999997 59999


Q ss_pred             cccchHHHHHHHHhc--CCCCCchhhHHhHhhcc---C-----------------CC-----C----hhhhccChhhHHH
Q 002736          253 SDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRH---R-----------------VL-----P----PQLLLKFPKEASF  301 (886)
Q Consensus       253 sDIwSlGvil~eLl~--pf~~~~~~~~~~~~~~~---~-----------------~~-----~----~~~~~~~~~~~~l  301 (886)
                      .||||+|||++||++  |.+.+.........+..   .                 .+     +    .......+...++
T Consensus       202 vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dl  281 (323)
T KOG0594|consen  202 VDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIEL  281 (323)
T ss_pred             cchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHH
Confidence            999999999999999  66666544444332211   0                 00     0    0111122467799


Q ss_pred             HHHccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          302 CLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       302 i~~~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                      +.+||.++|.+|.|+..+|.||||......
T Consensus       282 l~~~L~y~p~~R~Sa~~al~h~yf~~~~~~  311 (323)
T KOG0594|consen  282 LSKLLQYDPAKRISAKGALTHPYFSELPEK  311 (323)
T ss_pred             HHHHhccCcccCcCHHHHhcChhhcccccc
Confidence            999999999999999999999999987544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.1e-31  Score=256.35  Aligned_cols=267  Identities=22%  Similarity=0.420  Sum_probs=226.7

Q ss_pred             ccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCcccCcccccccceE-EecCCCC
Q 002736          542 EGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRD-GELFAAAGVNKKIKVFECDAIINENRDIHYPVV-EMASRSK  619 (886)
Q Consensus       542 d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d-~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~-~~~~~~~  619 (886)
                      .|.+.+-+....+-+.++..   ..-.+.+..++|+++ ...+++++.||.++|||+...       ..|+. .-.|...
T Consensus        37 ~G~L~ile~~~~~gi~e~~s---~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-------s~Pi~~~kEH~~E  106 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQS---YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-------SKPIHKFKEHKRE  106 (311)
T ss_pred             CceEEEEecCCCCCeEEEEe---eecccceeEeeecCCCcceEEEEecCceEEEeccCCC-------CcchhHHHhhhhh
Confidence            67777777754443444432   234778999999995 468889999999999996532       12332 2358899


Q ss_pred             eeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhcc
Q 002736          620 LSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL  699 (886)
Q Consensus       620 I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~  699 (886)
                      |.++.|++.....++++|+||+|++|+....+.++++++|...|....|+|..+++++++|.||+++|||++.+      
T Consensus       107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~------  180 (311)
T KOG0277|consen  107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP------  180 (311)
T ss_pred             eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC------
Confidence            99999999888999999999999999999999999999999999999999999999999999999999999985      


Q ss_pred             CceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEEEEECCCcEE
Q 002736          700 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLK  777 (886)
Q Consensus       700 ~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~sgs~Dg~i~  777 (886)
                      ++.+....|...+.|+.|+..+.+.+++|+.|+.|++||+|+.+.|+..+.+|.-+|..|+|+  ....|+|+|.|-+++
T Consensus       181 gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  181 GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence            444443334558999999998889999999999999999999999999999999999999997  667999999999999


Q ss_pred             EEeCCCCCccccCCCceEeecCCCceeEEEEecC-CCEEEEEcCCCcEEEEec
Q 002736          778 LWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW-DGYVATGSETNEVFVYHK  829 (886)
Q Consensus       778 lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~lasgs~Dg~v~iwd~  829 (886)
                      |||.....     ..+.+..-|+.-+..+.||+. ..++|+++.|+.++||+-
T Consensus       261 iw~~~~~d-----s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  261 IWDPERQD-----SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ecccccch-----hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99998664     456777789989999999986 559999999999999973

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.98  E-value=5.5e-33  Score=288.83  Aligned_cols=208  Identities=15%  Similarity=0.213  Sum_probs=166.4

Q ss_pred             ccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           26 HSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      +.+...+...+|+|+|+++. +++   ..+.+|+|||| .||+|.+||.+. +.+++..+++++.||+.||.+||+++||
T Consensus        57 ~~Ei~iLkel~H~nIV~l~d-~~~---~~~~i~lVMEyC~gGDLs~yi~~~-~~l~e~t~r~Fm~QLA~alq~L~~~~Ii  131 (429)
T KOG0595|consen   57 LSEIKILKELKHPNIVRLLD-CIE---DDDFIYLVMEYCNGGDLSDYIRRR-GRLPEATARHFMQQLASALQFLHENNII  131 (429)
T ss_pred             HHHHHHHHhcCCcceeeEEE-EEe---cCCeEEEEEEeCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            45556677788999999888 443   35689999999 779999999665 5889999999999999999999999999


Q ss_pred             ecccCCcceeeccC------CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCC
Q 002736          105 VHNVRPSCFVMSSF------NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT  178 (886)
Q Consensus       105 HrDlkP~NIll~~~------~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  178 (886)
                      ||||||+||||+..      -.+||+|||+++......                                          
T Consensus       132 HRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~------------------------------------------  169 (429)
T KOG0595|consen  132 HRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS------------------------------------------  169 (429)
T ss_pred             eccCCcceEEeccCCCCCCCceEEecccchhhhCCchh------------------------------------------
Confidence            99999999999864      358999999997653211                                          


Q ss_pred             CccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchH
Q 002736          179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRL  258 (886)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSl  258 (886)
                                                                       ...+.+|+|.|||||++....|+.|+|+||+
T Consensus       170 -------------------------------------------------~a~tlcGSplYMAPEV~~~~~YdAKADLWSi  200 (429)
T KOG0595|consen  170 -------------------------------------------------MAETLCGSPLYMAPEVIMSQQYDAKADLWSI  200 (429)
T ss_pred             -------------------------------------------------HHHHhhCCccccCHHHHHhccccchhhHHHH
Confidence                                                             1223599999999999999999999999999


Q ss_pred             HHHHHHHhc--CCCCCchhhHHhHhhcc-C-CCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          259 GVLLFELFC--PFSTGEEKTRTMSSLRH-R-VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       259 Gvil~eLl~--pf~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      |+|||++++  |++...........++. . ..+.......+...+++...|..+|.+|.+..+.+.|+++...+
T Consensus       201 G~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  201 GTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             HHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcCccccCchHHhhhhhhcccCc
Confidence            999999999  33344444444333333 2 23333344556677999999999999999999999999988754

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-32  Score=299.04  Aligned_cols=205  Identities=20%  Similarity=0.257  Sum_probs=169.8

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|+.|..  .+...+|+|+|.++| +|.++..  .++|+||| .+|+|.++|.+ ..+.++...+..++.||+.|++|||
T Consensus        85 ~f~~E~~--il~~l~HpNIV~f~G-~~~~~~~--~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH  159 (362)
T KOG0192|consen   85 AFRREAS--LLSRLRHPNIVQFYG-ACTSPPG--SLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLH  159 (362)
T ss_pred             HHHHHHH--HHHhCCCCCeeeEEE-EEcCCCC--ceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4555543  445589999999776 8875432  68999999 99999999966 4688999999999999999999999


Q ss_pred             ccC-eeecccCCcceeeccCC-ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCC
Q 002736          100 SQG-IVVHNVRPSCFVMSSFN-HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus       100 s~g-iiHrDlkP~NIll~~~~-~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  177 (886)
                      +++ ||||||||+|||++.++ ++||+|||+++......                                         
T Consensus       160 ~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-----------------------------------------  198 (362)
T KOG0192|consen  160 SEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK-----------------------------------------  198 (362)
T ss_pred             cCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc-----------------------------------------
Confidence            999 99999999999999997 99999999995432110                                         


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC--CCCCCccccc
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA--GAPVSCASDI  255 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~--~~~~s~~sDI  255 (886)
                                                                       ...+...||+.|||||++.  ...|+.++||
T Consensus       199 -------------------------------------------------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~Dv  229 (362)
T KOG0192|consen  199 -------------------------------------------------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDV  229 (362)
T ss_pred             -------------------------------------------------ccccCCCCCccccChhhhcCCCCcCCccchh
Confidence                                                             0111137899999999999  5689999999


Q ss_pred             chHHHHHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          256 YRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       256 wSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |||||+||||+|   ||........+.........|+.+..+.+.+..++.+||+.||..||++.+++.
T Consensus       230 ySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  230 YSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVS  298 (362)
T ss_pred             hhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHH
Confidence            999999999999   998877755555555566677767778899999999999999999999998876

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.97  E-value=5.1e-32  Score=288.89  Aligned_cols=204  Identities=16%  Similarity=0.181  Sum_probs=168.5

Q ss_pred             ccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccC
Q 002736           24 RKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQG  102 (886)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~g  102 (886)
                      -||.|...|.+..|+|+|.|.| ||.   ....|||+||| ..|-|.+.|+.. +.++......+.++|+.|++|||.+.
T Consensus       158 lkETdIKHLRkLkH~NII~FkG-VCt---qsPcyCIiMEfCa~GqL~~VLka~-~~itp~llv~Wsk~IA~GM~YLH~hK  232 (904)
T KOG4721|consen  158 LKETDIKHLRKLKHPNIITFKG-VCT---QSPCYCIIMEFCAQGQLYEVLKAG-RPITPSLLVDWSKGIAGGMNYLHLHK  232 (904)
T ss_pred             hhhhhHHHHHhccCcceeeEee-eec---CCceeEEeeeccccccHHHHHhcc-CccCHHHHHHHHHHhhhhhHHHHHhh
Confidence            4678889999999999999777 886   46789999999 778999999654 78899999999999999999999999


Q ss_pred             eeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          103 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       103 iiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |||||||.-||||+.+..|||+|||.++....-+                                              
T Consensus       233 IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S----------------------------------------------  266 (904)
T KOG4721|consen  233 IIHRDLKSPNILISYDDVVKISDFGTSKELSDKS----------------------------------------------  266 (904)
T ss_pred             HhhhccCCCceEeeccceEEeccccchHhhhhhh----------------------------------------------
Confidence            9999999999999999999999999985431110                                              


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLL  262 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil  262 (886)
                                                                   ....++||..|||||+|...+++.|+|||||||+|
T Consensus       267 ---------------------------------------------TkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVL  301 (904)
T KOG4721|consen  267 ---------------------------------------------TKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVL  301 (904)
T ss_pred             ---------------------------------------------hhhhhhhhHhhhCHHHhhcCCcccccceehhHHHH
Confidence                                                         11124899999999999999999999999999999


Q ss_pred             HHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCC
Q 002736          263 FELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSE  323 (886)
Q Consensus       263 ~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~  323 (886)
                      |||||   ||..-......+-.-....--+.+..++..++-|++.||.-.|..||++.++|.|-
T Consensus       302 WEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~Hl  365 (904)
T KOG4721|consen  302 WEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHL  365 (904)
T ss_pred             HHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence            99999   77544433333222222233455556677788999999999999999999999983

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.2e-31  Score=268.13  Aligned_cols=287  Identities=18%  Similarity=0.342  Sum_probs=234.5

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcE
Q 002736          563 DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVV  642 (886)
Q Consensus       563 ~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V  642 (886)
                      .+..|.+.|.-+.|+++|++||+|+.|.+.-||++.....    ........+|..+|..|.|+| +..+|++|+.|..+
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~  293 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVL  293 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECC-CCCeEEecCchHhe
Confidence            3467999999999999999999999999999999764211    122334567999999999999 68889999999999


Q ss_pred             EEEECCCceEEEEecc-cCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec--CCCeEEEEEeC
Q 002736          643 QVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT--KANVCCVQFPL  719 (886)
Q Consensus       643 ~iWd~~t~~~~~~~~~-h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp  719 (886)
                      .+||+.+|.....+.. |...+.+++|.| |+..+++|+.|+++..||+....        ......  ...|.+++..+
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~--------~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI--------LGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch--------hhcccccccceeEEEEEcC
Confidence            9999999998877753 568899999999 99999999999999999998532        112111  24589999999


Q ss_pred             CCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeec
Q 002736          720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTG  798 (886)
Q Consensus       720 ~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~  798 (886)
                      | |+++++...|..|++|+..+... .. +..-..+|++...+ ++.++++.=.+..|.+||+...      ..++.+.|
T Consensus       365 D-gk~vl~v~~d~~i~l~~~e~~~d-r~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~------~lv~kY~G  435 (519)
T KOG0293|consen  365 D-GKYVLLVTVDKKIRLYNREARVD-RG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN------KLVRKYFG  435 (519)
T ss_pred             C-CcEEEEEecccceeeechhhhhh-hc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh------hHHHHhhc
Confidence            9 88888888999999999876542 22 22344679999998 8888888888999999999965      55888999


Q ss_pred             CCCceeE--EEEec-CCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEe
Q 002736          799 HTNVKNF--VGLSV-WDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAAN  875 (886)
Q Consensus       799 h~~~v~~--v~~sp-~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~  875 (886)
                      |+..-.-  -+|-- +..+||+||+|+.|+||+..+++++..+             .+|...|++|+|+|..+.++|+|+
T Consensus       436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-------------sGHs~~vNcVswNP~~p~m~ASas  502 (519)
T KOG0293|consen  436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-------------SGHSKTVNCVSWNPADPEMFASAS  502 (519)
T ss_pred             ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-------------cCCcceeeEEecCCCCHHHhhccC
Confidence            9865322  24443 3469999999999999999999998654             456678999999999998999999


Q ss_pred             CCCCEEEEEe
Q 002736          876 SSGNIKILEM  885 (886)
Q Consensus       876 ~dg~I~iw~l  885 (886)
                      +||+|+||..
T Consensus       503 DDgtIRIWg~  512 (519)
T KOG0293|consen  503 DDGTIRIWGP  512 (519)
T ss_pred             CCCeEEEecC
Confidence            9999999963

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1e-30  Score=274.58  Aligned_cols=291  Identities=19%  Similarity=0.333  Sum_probs=238.2

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      +.+|+..|+++++.|.|..|++||.|-.|++||+........  ............|.++.|++ .+++|++.+....++
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~--~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR--SFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAK  239 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccch--hhhccCcccccccceeeecC-CCCeEEEEecCccee
Confidence            367899999999999999999999999999999987544332  23334455667899999999 678777777789999


Q ss_pred             EEECCCceEEEE------------ecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec---
Q 002736          644 VWDVSRSQVLTE------------MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT---  708 (886)
Q Consensus       644 iWd~~t~~~~~~------------~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~---  708 (886)
                      |+|-...+.+..            -++|...++|.+|+|.+...|++|+.||+++|||++...      .....+.+   
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k------~q~qVik~k~~  313 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK------SQLQVIKTKPA  313 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch------hheeEEeeccC
Confidence            999654443322            368999999999999888999999999999999998753      22333332   


Q ss_pred             ---CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCc-c-eEEEecCCC--CeEEEEec-CCCEEEEEECCCcEEEEe
Q 002736          709 ---KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-P-LCTLIGHNK--TVSYVKFV-DATTLVSASTDNTLKLWD  780 (886)
Q Consensus       709 ---~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~-~-~~~~~~h~~--~V~~v~f~-~~~~l~sgs~Dg~i~lwd  780 (886)
                         .-++++++|+|+ +.+||+|+.||.|.+||.++... | ...-.+|..  .|+||+|+ +|++|+|-|.|+++++||
T Consensus       314 ~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence               346899999999 89999999999999999876432 2 345568887  89999998 999999999999999999


Q ss_pred             CCCCCccccCCCceEeecCCC--ceeEEEEecCCCEEEEEcC------CCcEEEEecCCCCcceeeccCCCCCCCCCccc
Q 002736          781 LSMCTSRVIDTPLHSFTGHTN--VKNFVGLSVWDGYVATGSE------TNEVFVYHKAFPMPALSFNFNHADPLSGPETD  852 (886)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~g~~lasgs~------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  852 (886)
                      ++..+     +|+.+..|--+  +-+.++|||+.++|++|+.      .|++++||..+-..++.+.+.           
T Consensus       393 Lrq~k-----kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-----------  456 (641)
T KOG0772|consen  393 LRQFK-----KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-----------  456 (641)
T ss_pred             ccccc-----cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-----------
Confidence            99875     67777776544  3577899999999999974      578999999888877776554           


Q ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCCEEEE
Q 002736          853 DAAQFISSVCWRGQSSNTLVAANSSGNIKIL  883 (886)
Q Consensus       853 ~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw  883 (886)
                        ...|..+.|+|.-+ .+.+++.||+++||
T Consensus       457 --~aSvv~~~WhpkLN-Qi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  457 --TASVVRCLWHPKLN-QIFAGSGDGTAHVY  484 (641)
T ss_pred             --CceEEEEeecchhh-heeeecCCCceEEE
Confidence              23499999999999 89999999999997

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-32  Score=302.37  Aligned_cols=208  Identities=18%  Similarity=0.231  Sum_probs=171.7

Q ss_pred             cccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCe
Q 002736           25 KHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGI  103 (886)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~gi  103 (886)
                      .|...+.++. .||=.+.+|+    .-...+++|.+||| .||++..+...  +.+++..++.|+..|+.||.|||++||
T Consensus       417 ~EkrI~~la~-~HPFL~~L~~----~fQT~~~l~fvmey~~Ggdm~~~~~~--~~F~e~rarfyaAev~l~L~fLH~~~I  489 (694)
T KOG0694|consen  417 CEKRIFELAN-RHPFLVNLFS----CFQTKEHLFFVMEYVAGGDLMHHIHT--DVFSEPRARFYAAEVVLGLQFLHENGI  489 (694)
T ss_pred             HHHHHHHHhc-cCCeEeeccc----ccccCCeEEEEEEecCCCcEEEEEec--ccccHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3434444444 7888888887    23467889999999 88886666533  679999999999999999999999999


Q ss_pred             eecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccc
Q 002736          104 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSE  183 (886)
Q Consensus       104 iHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  183 (886)
                      |+||||.+||||+..|++||+|||+|+.-...                                                
T Consensus       490 IYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~------------------------------------------------  521 (694)
T KOG0694|consen  490 IYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQ------------------------------------------------  521 (694)
T ss_pred             eeeecchhheEEcccCcEEecccccccccCCC------------------------------------------------
Confidence            99999999999999999999999999643211                                                


Q ss_pred             ccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHH
Q 002736          184 ASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLF  263 (886)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~  263 (886)
                                                                ...+.+.+|||.|||||++.+..|+.++|+|||||+||
T Consensus       522 ------------------------------------------g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLly  559 (694)
T KOG0694|consen  522 ------------------------------------------GDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLY  559 (694)
T ss_pred             ------------------------------------------CCccccccCChhhcChhhhccCcccchhhHHHHHHHHH
Confidence                                                      00334569999999999999999999999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCCcCc
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEPRDS  331 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~~~~  331 (886)
                      |||.   ||.+..+....-+++...++.|.+.  +.++..++.++|..+|++|..     +.+|.+||||+.....
T Consensus       560 eML~Gq~PF~gddEee~FdsI~~d~~~yP~~l--s~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~  633 (694)
T KOG0694|consen  560 EMLVGESPFPGDDEEEVFDSIVNDEVRYPRFL--SKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWD  633 (694)
T ss_pred             HHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcc--cHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCCHH
Confidence            9999   8877777776667777777666654  478889999999999999965     5889999999987643

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-32  Score=288.49  Aligned_cols=212  Identities=19%  Similarity=0.223  Sum_probs=165.5

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+....|+|+|.+..  +.|..+.+.+|+|.|| ..|.+. |......-+++.+++.|+++++.||+|||.|||||||
T Consensus       159 IailKkl~H~nVV~LiE--vLDDP~s~~~YlVley~s~G~v~-w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRD  235 (576)
T KOG0585|consen  159 IAILKKLHHPNVVKLIE--VLDDPESDKLYLVLEYCSKGEVK-WCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRD  235 (576)
T ss_pred             HHHHHhcCCcCeeEEEE--eecCcccCceEEEEEeccCCccc-cCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccc
Confidence            34455567788888777  5566788899999999 444443 3422222289999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|+||+.+|+|||+|||++..+.....++.                             |                 
T Consensus       236 IKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~-----------------------------d-----------------  269 (576)
T KOG0585|consen  236 IKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGS-----------------------------D-----------------  269 (576)
T ss_pred             cchhheEEcCCCcEEeeccceeeecccCCcccc-----------------------------H-----------------
Confidence            999999999999999999999854311100000                             0                 


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC----CCcccccchHHHHHH
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP----VSCASDIYRLGVLLF  263 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~----~s~~sDIwSlGvil~  263 (886)
                                                      .       .....+|||.|+|||...++.    .+++.|||||||+||
T Consensus       270 --------------------------------~-------~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLY  310 (576)
T KOG0585|consen  270 --------------------------------D-------QLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLY  310 (576)
T ss_pred             --------------------------------H-------HHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHH
Confidence                                            0       011138999999999998732    578999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      .|+.   ||+.........+++......|......+.+++||.+||.+||.+|++..+|..|||....
T Consensus       311 CllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  311 CLLFGQLPFFDDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRD  378 (576)
T ss_pred             HhhhccCCcccchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceeccC
Confidence            9997   9987776666656555555566666678889999999999999999999999999998765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=7.1e-30  Score=247.95  Aligned_cols=287  Identities=15%  Similarity=0.240  Sum_probs=249.7

Q ss_pred             cCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCC
Q 002736          561 QGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEG  640 (886)
Q Consensus       561 ~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg  640 (886)
                      ..++.+|...|.+++|+-+|..+|+|+.|++++||+++..     .........+|.+.|-.++|.|..+.++++++.|.
T Consensus        13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk   87 (313)
T KOG1407|consen   13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDK   87 (313)
T ss_pred             hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCc
Confidence            3556789999999999999999999999999999998763     11222334568889999999999999999999999


Q ss_pred             cEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCC
Q 002736          641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLD  720 (886)
Q Consensus       641 ~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  720 (886)
                      +|++||+++++++..+......++ +.|+| ++.+++.++.|..|...|.++       -+.....+.+..+.-++|+.+
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni~-i~wsp-~g~~~~~~~kdD~it~id~r~-------~~~~~~~~~~~e~ne~~w~~~  158 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENIN-ITWSP-DGEYIAVGNKDDRITFIDART-------YKIVNEEQFKFEVNEISWNNS  158 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcceE-EEEcC-CCCEEEEecCcccEEEEEecc-------cceeehhcccceeeeeeecCC
Confidence            999999999999988876555565 78998 999999999999999999998       566666666778899999965


Q ss_pred             CCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC
Q 002736          721 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       721 ~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h  799 (886)
                       +++|+..+..|+|.|......+ |+.++.+|.....||+|. +|++||+|+.|..+-|||+...      -+++.+..+
T Consensus       159 -nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------iC~R~isRl  230 (313)
T KOG1407|consen  159 -NDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------ICERCISRL  230 (313)
T ss_pred             -CCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEeeccccceeeccChhHh------hhheeeccc
Confidence             6777777778999999988777 799999999999999996 9999999999999999999987      458999999


Q ss_pred             CCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCC--
Q 002736          800 TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSS--  877 (886)
Q Consensus       800 ~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~d--  877 (886)
                      .-+|+.+.||-+|++||+||+|..|-|=++.++..+..+.              +.++...|+|+|..+ +||-|++|  
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--------------~~~~t~tVAWHPk~~-LLAyA~ddk~  295 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--------------CEGPTFTVAWHPKRP-LLAYACDDKD  295 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--------------ccCCceeEEecCCCc-eeeEEecCCC
Confidence            9999999999999999999999999999999998887654              345688999999999 99988876  


Q ss_pred             -------CCEEEEE
Q 002736          878 -------GNIKILE  884 (886)
Q Consensus       878 -------g~I~iw~  884 (886)
                             |++|+|-
T Consensus       296 ~d~~reag~vKiFG  309 (313)
T KOG1407|consen  296 GDSNREAGTVKIFG  309 (313)
T ss_pred             CccccccceeEEec
Confidence                   5777764

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=2.7e-32  Score=280.34  Aligned_cols=198  Identities=21%  Similarity=0.317  Sum_probs=165.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+..||++++..|. |.+   +.+..+|+||| .||.|.+|+.+. +.|++.+++++|+||+.||.|+|.++|+|||||
T Consensus       106 IMSsLNHPhII~IyE-VFE---NkdKIvivMEYaS~GeLYDYiSer-~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLK  180 (668)
T KOG0611|consen  106 IMSSLNHPHIIQIYE-VFE---NKDKIVIVMEYASGGELYDYISER-GSLSEREARHFFRQIVSAVHYCHKNRVVHRDLK  180 (668)
T ss_pred             HHhhcCCCceeehhh-hhc---CCceEEEEEEecCCccHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHhhccceecccc
Confidence            456689999998777 444   56889999999 999999999654 789999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      .+||||+.++++||+|||++..+....                                                     
T Consensus       181 LENILLD~N~NiKIADFGLSNly~~~k-----------------------------------------------------  207 (668)
T KOG0611|consen  181 LENILLDQNNNIKIADFGLSNLYADKK-----------------------------------------------------  207 (668)
T ss_pred             hhheeecCCCCeeeeccchhhhhcccc-----------------------------------------------------
Confidence            999999999999999999985443221                                                     


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCC-CcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPV-SCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~-s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ..+++||+|.|.+||+++|.+| ++.+|-|||||+||.|+. 
T Consensus       208 --------------------------------------fLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyG  249 (668)
T KOG0611|consen  208 --------------------------------------FLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYG  249 (668)
T ss_pred             --------------------------------------HHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhc
Confidence                                                  2334599999999999999997 678999999999999998 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                        ||.+. ++......+..+.+...  ..+..+..||.|||..+|.+|.|+.+|-.|=|++-
T Consensus       250 tMPFDG~-Dhk~lvrQIs~GaYrEP--~~PSdA~gLIRwmLmVNP~RRATieDiAsHWWvNw  308 (668)
T KOG0611|consen  250 TMPFDGR-DHKRLVRQISRGAYREP--ETPSDASGLIRWMLMVNPERRATIEDIASHWWVNW  308 (668)
T ss_pred             ccccCCc-hHHHHHHHhhcccccCC--CCCchHHHHHHHHHhcCcccchhHHHHhhhheeec
Confidence              88554 45555555555544322  23367789999999999999999999999988763

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.2e-31  Score=310.12  Aligned_cols=199  Identities=28%  Similarity=0.432  Sum_probs=160.5

Q ss_pred             CceEEEEeeCCcchhhhhcCCCCCc-ChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCC
Q 002736           55 DPFVHAIEWGDVSLRQWLDKPKRSV-DVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG  133 (886)
Q Consensus        55 ~~~~i~~e~~g~sL~~~l~~~~~~l-~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~  133 (886)
                      ..+||.||||..+|..++...+... ...+.+++|+||++||.|+|++|||||||||.||+|++.++|||+|||+++...
T Consensus       669 ~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~  748 (1351)
T KOG1035|consen  669 LILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLK  748 (1351)
T ss_pred             eEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhh
Confidence            4579999997777666664443333 578999999999999999999999999999999999999999999999997632


Q ss_pred             CC--ccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCccccccccc
Q 002736          134 SD--SHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDN  211 (886)
Q Consensus       134 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  211 (886)
                      ..  ..+.                              +-    ...                                 
T Consensus       749 ~~~~~~d~------------------------------~~----~~~---------------------------------  761 (1351)
T KOG1035|consen  749 ENLESIDQ------------------------------DL----SFS---------------------------------  761 (1351)
T ss_pred             hhhhhHhh------------------------------cc----Ccc---------------------------------
Confidence            10  0000                              00    000                                 


Q ss_pred             ccccccccccCCCCCceeeeeccccceecccccCCCC---CCcccccchHHHHHHHHhcCCCCCchhhHHhHhhccCCCC
Q 002736          212 RVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP---VSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLP  288 (886)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~---~s~~sDIwSlGvil~eLl~pf~~~~~~~~~~~~~~~~~~~  288 (886)
                             ...........|..+||..|+|||++.+..   |+.|+|+||||||||||+.||.+.+++..+...++...+|
T Consensus       762 -------~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~TsMERa~iL~~LR~g~iP  834 (1351)
T KOG1035|consen  762 -------TNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGTSMERASILTNLRKGSIP  834 (1351)
T ss_pred             -------ccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhccCCchHHHHHHHHhcccCCCC
Confidence                   000011111345669999999999998754   9999999999999999999999999999999999988777


Q ss_pred             hh---hhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          289 PQ---LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       289 ~~---~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      ..   +.+..+..+.+|.+||+.||++||||.|+|++.||..
T Consensus       835 ~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llpp  876 (1351)
T KOG1035|consen  835 EPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSELLPP  876 (1351)
T ss_pred             CCcccccccchHHHHHHHHHhcCCCccCCCHHHHhhccCCCc
Confidence            76   7778889999999999999999999999999999985

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=7.6e-32  Score=268.04  Aligned_cols=213  Identities=18%  Similarity=0.268  Sum_probs=163.5

Q ss_pred             ccccCceeecccccccCCCCCCcccccccc-CCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           24 RKHSDGVELTHGDHLRNQGGLSGVCENEAA-IDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      |.|.++--++. .|+++|.... ++++... ...+.++||+ +||.|+..+..+ ...+++.++-.|++||..||.|||+
T Consensus       102 RrEVeLHw~~s-~h~~iV~Iid-VyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~  179 (400)
T KOG0604|consen  102 RREVELHWMAS-GHPHIVSIID-VYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHS  179 (400)
T ss_pred             HhHhhhhhhhc-CCCceEEeeh-hhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            66655433332 4444444444 4444433 4568899999 999999999554 3569999999999999999999999


Q ss_pred             cCeeecccCCcceeec---cCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCC
Q 002736          101 QGIVVHNVRPSCFVMS---SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus       101 ~giiHrDlkP~NIll~---~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  177 (886)
                      .+|+||||||+|+|..   .+-.+|++|||+|+......                                         
T Consensus       180 ~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~-----------------------------------------  218 (400)
T KOG0604|consen  180 MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPG-----------------------------------------  218 (400)
T ss_pred             cchhhccCChhheeeecCCCCcceEecccccccccCCCc-----------------------------------------
Confidence            9999999999999996   34569999999996542110                                         


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccch
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwS  257 (886)
                                                                        ...+.+-||+|.|||++-..+|+.++|+||
T Consensus       219 --------------------------------------------------~L~TPc~TPyYvaPevlg~eKydkscdmwS  248 (400)
T KOG0604|consen  219 --------------------------------------------------DLMTPCFTPYYVAPEVLGPEKYDKSCDMWS  248 (400)
T ss_pred             --------------------------------------------------cccCCcccccccCHHHhCchhcCCCCCccc
Confidence                                                              112236699999999998888999999999


Q ss_pred             HHHHHHHHhc---CCCCCchhhH--Hh-Hhhcc---CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          258 LGVLLFELFC---PFSTGEEKTR--TM-SSLRH---RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       258 lGvil~eLl~---pf~~~~~~~~--~~-~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      ||||+|-|||   ||++......  -| ..++.   .+..+.|...+...+++|+.+|.-+|++|.|+.+++.|||+...
T Consensus       249 lgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~  328 (400)
T KOG0604|consen  249 LGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQY  328 (400)
T ss_pred             hhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhccc
Confidence            9999999999   7766543211  11 22222   24456778888889999999999999999999999999999875


Q ss_pred             c
Q 002736          329 R  329 (886)
Q Consensus       329 ~  329 (886)
                      .
T Consensus       329 ~  329 (400)
T KOG0604|consen  329 E  329 (400)
T ss_pred             c
Confidence            4

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3.4e-32  Score=290.93  Aligned_cols=223  Identities=20%  Similarity=0.252  Sum_probs=172.4

Q ss_pred             cCCCCCcccccccCceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHH
Q 002736           15 GDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEI   94 (886)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~   94 (886)
                      +|.+--..|+.|...+.-.+ .|.++|.++.    .|...+.+|++|||+..+|..+|++....++....+.|..|++.|
T Consensus       398 ~D~qtl~gy~nEI~lL~KLk-g~~~IIqL~D----YEv~d~~lYmvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~a  472 (677)
T KOG0596|consen  398 ADNQTLDGYRNEIALLNKLK-GHDKIIQLYD----YEVTDGYLYMVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLA  472 (677)
T ss_pred             cCHHHHHHHHHHHHHHHHhc-CCceEEEEee----eeccCceEEEEeecccccHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            33333456777776665555 4488888777    788899999999999999999998776666767999999999999


Q ss_pred             HHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccc
Q 002736           95 VYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLV  174 (886)
Q Consensus        95 l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  174 (886)
                      |.++|.+||||.||||.||||. .|.+||||||+|..+..+..                                     
T Consensus       473 V~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTT-------------------------------------  514 (677)
T KOG0596|consen  473 VKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTT-------------------------------------  514 (677)
T ss_pred             HHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCcccc-------------------------------------
Confidence            9999999999999999999995 48999999999976543311                                     


Q ss_pred             cCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-------
Q 002736          175 TAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-------  247 (886)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-------  247 (886)
                                                                         +......+||+-|||||.+...       
T Consensus       515 ---------------------------------------------------sI~kdsQvGT~NYMsPEAl~~~~s~~~~~  543 (677)
T KOG0596|consen  515 ---------------------------------------------------SIVKDSQVGTVNYMSPEALTDMSSSRENG  543 (677)
T ss_pred             ---------------------------------------------------ceeeccccCcccccCHHHHhhccccccCC
Confidence                                                               0011224999999999998532       


Q ss_pred             ----CCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCC---ChhhhccChhhHHHHHHccCCCCCCCCCHH
Q 002736          248 ----PVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL---PPQLLLKFPKEASFCLWLLHPEPSGRPKMG  317 (886)
Q Consensus       248 ----~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  317 (886)
                          +++.+|||||||||||+|+.   ||..-......+..+.....   .|.... ..++.+++..||..||.+||++.
T Consensus       544 ~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~-~~~li~~mK~CL~rdPkkR~si~  622 (677)
T KOG0596|consen  544 KSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPE-NDELIDVMKCCLARDPKKRWSIP  622 (677)
T ss_pred             CcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCC-chHHHHHHHHHHhcCcccCCCcH
Confidence                26789999999999999998   88665555555555554311   111111 12277999999999999999999


Q ss_pred             HHhcCCCCCCCcCch
Q 002736          318 ELLQSEFLNEPRDSM  332 (886)
Q Consensus       318 eil~h~~~~~~~~~~  332 (886)
                      ++|+|||+...+.+.
T Consensus       623 eLLqhpFl~~~~i~~  637 (677)
T KOG0596|consen  623 ELLQHPFLQIQPIPV  637 (677)
T ss_pred             HHhcCcccccccccc
Confidence            999999999865443

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.2e-32  Score=268.03  Aligned_cols=195  Identities=18%  Similarity=0.200  Sum_probs=157.8

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      ..||+++.+-. +++   ....+++++|+ ..|.|+++|.+. -.+++.+.+.|++||++||.|||.++||||||||+||
T Consensus        80 ~GHP~II~l~D-~ye---s~sF~FlVFdl~prGELFDyLts~-VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENI  154 (411)
T KOG0599|consen   80 MGHPYIIDLQD-VYE---SDAFVFLVFDLMPRGELFDYLTSK-VTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENI  154 (411)
T ss_pred             cCCCcEEEeee-ecc---CcchhhhhhhhcccchHHHHhhhh-eeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhe
Confidence            56777776555 332   24457788888 789999999654 5789999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |++.+.++||.|||++..+...+                                                         
T Consensus       155 Llddn~~i~isDFGFa~~l~~Ge---------------------------------------------------------  177 (411)
T KOG0599|consen  155 LLDDNMNIKISDFGFACQLEPGE---------------------------------------------------------  177 (411)
T ss_pred             eeccccceEEeccceeeccCCch---------------------------------------------------------
Confidence            99999999999999996553221                                                         


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----C-CCCCcccccchHHHHHHHHhc
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----G-APVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~-~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                        +....||||.|+|||.+.     + ..|+..+|+|++|||+|.||.
T Consensus       178 ----------------------------------kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLa  223 (411)
T KOG0599|consen  178 ----------------------------------KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLA  223 (411)
T ss_pred             ----------------------------------hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHc
Confidence                                              223459999999999984     2 238999999999999999998


Q ss_pred             ---CCCCCchhhHHhHhhcc---CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRH---RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                         ||.... .......+.+   .+..|.|.+.+...++||.+||+.||.+|.|++|+|+||||.
T Consensus       224 GcpPFwHRk-QmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~  287 (411)
T KOG0599|consen  224 GCPPFWHRK-QMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFI  287 (411)
T ss_pred             CCCchhHHH-HHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHH
Confidence               664332 2222223333   345788889999999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=8.3e-29  Score=261.28  Aligned_cols=315  Identities=18%  Similarity=0.263  Sum_probs=252.3

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEEcCcccCcccccccceE
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVN----KKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d----~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      .+|...|.+++|+...-+..  |+ ..+..-.++|..|+|++|+++|++.|..    |.+.+||-.+..         -.
T Consensus        75 ASGD~sG~vRIWdtt~~~hi--LK-nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv---------Ge  142 (603)
T KOG0318|consen   75 ASGDVSGKVRIWDTTQKEHI--LK-NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV---------GE  142 (603)
T ss_pred             eecCCcCcEEEEeccCccee--ee-eeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc---------ce
Confidence            56778999999997653322  22 2344568899999999999999988654    345566654321         12


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      ..+|...|+++.|-|.-+-.++||+.|++|.+|+-.--+....++.|.+-|+|+.|+| |+..+++.+.||+|.|||=.+
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt  221 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT  221 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC
Confidence            3468888999999997788999999999999999877788888999999999999999 899999999999999999999


Q ss_pred             hhhhhccCceeeeee----cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC-------------------------
Q 002736          693 AILLLHLGVSIGTIK----TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK-------------------------  743 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~----~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~-------------------------  743 (886)
                             +..+..+.    |++.|..++|+|| +..|++.|+|.++++||+.+.+                         
T Consensus       222 -------ge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  222 -------GEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             -------ccEEEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence                   55555554    6788999999999 8899999999999999987553                         


Q ss_pred             -----------------cceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccc-----------------
Q 002736          744 -----------------IPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRV-----------------  788 (886)
Q Consensus       744 -----------------~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~-----------------  788 (886)
                                       .++.++.||.+.|+++..+ ++.+|+||+.||.|.-||..++.+..                 
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence                             1345678999999999997 88999999999999999986543210                 


Q ss_pred             --------------------------------------------------------------------------------
Q 002736          789 --------------------------------------------------------------------------------  788 (886)
Q Consensus       789 --------------------------------------------------------------------------------  788 (886)
                                                                                                      
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence                                                                                            


Q ss_pred             ----------------------cCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCC
Q 002736          789 ----------------------IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL  846 (886)
Q Consensus       789 ----------------------~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~  846 (886)
                                            .......+..|.++|++|++|||+.|||+|...+.|.+||+.+.+....         
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~---------  524 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN---------  524 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc---------
Confidence                                  0001112345778899999999999999999999999999888665221         


Q ss_pred             CCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          847 SGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       847 ~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                         ..-=|...|++|+|+|++. +||||+-|-+|.||+|
T Consensus       525 ---~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  525 ---RWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSV  559 (603)
T ss_pred             ---eeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEc
Confidence               1122567799999999999 9999999999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=7.9e-31  Score=274.61  Aligned_cols=266  Identities=19%  Similarity=0.259  Sum_probs=230.8

Q ss_pred             cccccccccceEEeeecC-ceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEE
Q 002736          535 GWINPFLEGLCKYLSFSK-LRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE  613 (886)
Q Consensus       535 ~~~~~~~d~~~~~w~~~~-~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~  613 (886)
                      =+++++.|+.|++|++-. +++++++     .+|..+|.+++|+.+|..|+++|.|+.||+||.+++        .....
T Consensus       229 LlLS~gmD~~vklW~vy~~~~~lrtf-----~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG--------~~~~~  295 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYDDRRCLRTF-----KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG--------QVLSR  295 (503)
T ss_pred             EEEecCCCceEEEEEEecCcceehhh-----hcchhhhhhhhccccCCeeeeeecceeeeeeccccc--------eEEEE
Confidence            358899999999999765 7777666     789999999999999999999999999999999884        33455


Q ss_pred             ecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchh
Q 002736          614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA  693 (886)
Q Consensus       614 ~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~  693 (886)
                      +.....+.|+.|+|.+.+++++|+.|+.|+.||+++++.++++..|-+.|.++.|-+ ++..+++.++|++++||+.+. 
T Consensus       296 f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~-  373 (503)
T KOG0282|consen  296 FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRI-  373 (503)
T ss_pred             EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCC-
Confidence            667778999999998779999999999999999999999999999999999999997 999999999999999999988 


Q ss_pred             hhhhccCceeeeeec--CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC--cceEEEecCCCCe--EEEEec-CCCE
Q 002736          694 ILLLHLGVSIGTIKT--KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK--IPLCTLIGHNKTV--SYVKFV-DATT  766 (886)
Q Consensus       694 ~~~~~~~~~~~~~~~--~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~--~~~~~~~~h~~~V--~~v~f~-~~~~  766 (886)
                            +..+..+..  .....|+..+|+ +.++++-+.|+.|.+|.+...-  .....|.||..+-  ..|.|+ ||.+
T Consensus       374 ------~v~ik~i~~~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~  446 (503)
T KOG0282|consen  374 ------PVPIKNIADPEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT  446 (503)
T ss_pred             ------CccchhhcchhhccCcceecCCC-CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe
Confidence                  444443332  234679999999 8999999999999999975431  2245688998654  456677 9999


Q ss_pred             EEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCC-EEEEEcCCCcEEEEe
Q 002736          767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG-YVATGSETNEVFVYH  828 (886)
Q Consensus       767 l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~-~lasgs~Dg~v~iwd  828 (886)
                      |+||+.||.+.+||.++.      ..+..+++|..++..+.|+|... .+||||.||.|++||
T Consensus       447 l~SGdsdG~v~~wdwkt~------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  447 LCSGDSDGKVNFWDWKTT------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEeecCCccEEEeechhh------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999987      45889999999999999999854 899999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1e-28  Score=270.22  Aligned_cols=325  Identities=15%  Similarity=0.237  Sum_probs=262.7

Q ss_pred             cccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccC----------
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN----------  602 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~----------  602 (886)
                      .+-+++|..|-.+++|.....+-   +....+.+|+++|-++-|..|..-+.|.+.||.|.+|.+.....          
T Consensus       157 Sr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e  233 (893)
T KOG0291|consen  157 SRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEE  233 (893)
T ss_pred             CceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccc
Confidence            34556778888899998877654   33345678999999999999999999999999999999872100          


Q ss_pred             ----------ccccc---ccce---E-EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEE
Q 002736          603 ----------ENRDI---HYPV---V-EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS  665 (886)
Q Consensus       603 ----------~~~~~---~~~~---~-~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~  665 (886)
                                .....   .+..   . ......+|+|.+|++ .-++|++|=..|...++.+..-..+..+.-...+|..
T Consensus       234 g~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t  312 (893)
T KOG0291|consen  234 GSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT  312 (893)
T ss_pred             ccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence                      00000   1111   1 112347899999998 6789999999999999999999999998877889999


Q ss_pred             EEEccCCCCEEEEEeCC-CcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC
Q 002736          666 IDFSSADPTLLASGSDD-GSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK  743 (886)
Q Consensus       666 v~~~p~~~~~l~sgs~D-g~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~  743 (886)
                      +.|+. .|+++|.|+.. |.+-||+..+       ...+.... |...++|++++|| |+++|+|+.||.|++||.+.+-
T Consensus       313 ~~~N~-tGDWiA~g~~klgQLlVweWqs-------EsYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~Sgf  383 (893)
T KOG0291|consen  313 VSFNS-TGDWIAFGCSKLGQLLVWEWQS-------ESYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGF  383 (893)
T ss_pred             EEecc-cCCEEEEcCCccceEEEEEeec-------cceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEeccCce
Confidence            99996 89999988765 8999999988       44444433 4567999999999 9999999999999999999887


Q ss_pred             cceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCcc-----------------------------------
Q 002736          744 IPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSR-----------------------------------  787 (886)
Q Consensus       744 ~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~-----------------------------------  787 (886)
                       +..+|..|...|+.+.|+ .++.++|+|-||+|+.||+.....-                                   
T Consensus       384 -C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  384 -CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV  462 (893)
T ss_pred             -EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence             499999999999999998 9999999999999999998643220                                   


Q ss_pred             ---ccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEc
Q 002736          788 ---VIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWR  864 (886)
Q Consensus       788 ---~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s  864 (886)
                         ...+.+..+.||.++|.+++|+|.|..||+||+|.+|++||+-......             +.-.+..-|.+|+|+
T Consensus       463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v-------------Etl~i~sdvl~vsfr  529 (893)
T KOG0291|consen  463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV-------------ETLEIRSDVLAVSFR  529 (893)
T ss_pred             EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee-------------eeEeeccceeEEEEc
Confidence               0234556788999999999999999999999999999999987542221             112233459999999


Q ss_pred             cCCCcEEEEEeCCCCEEEEEe
Q 002736          865 GQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       865 ~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      |+|. -|+.+..||.|-+||.
T Consensus       530 PdG~-elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  530 PDGK-ELAVATLDGQITFFDI  549 (893)
T ss_pred             CCCC-eEEEEEecceEEEEEh
Confidence            9999 9999999999999985

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.97  E-value=6.4e-32  Score=288.58  Aligned_cols=200  Identities=20%  Similarity=0.264  Sum_probs=168.2

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCc
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS  111 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~  111 (886)
                      +...+|+|++.++.    .-....++++|.||+-|+|+.+|... +.++++.++.|..|++.||.|||+.+|+|||+||.
T Consensus        55 ~r~lkHpniv~m~e----sfEt~~~~~vVte~a~g~L~~il~~d-~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPq  129 (808)
T KOG0597|consen   55 LRSLKHPNIVEMLE----SFETSAHLWVVTEYAVGDLFTILEQD-GKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQ  129 (808)
T ss_pred             HHhcCCcchhhHHH----hhcccceEEEEehhhhhhHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcc
Confidence            34578999999777    23345778999999777999999554 78999999999999999999999999999999999


Q ss_pred             ceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCC
Q 002736          112 CFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSS  191 (886)
Q Consensus       112 NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  191 (886)
                      ||||...|++|++|||+++..+...                                                       
T Consensus       130 niLl~~~~~~KlcdFg~Ar~m~~~t-------------------------------------------------------  154 (808)
T KOG0597|consen  130 NILLEKGGTLKLCDFGLARAMSTNT-------------------------------------------------------  154 (808)
T ss_pred             eeeecCCCceeechhhhhhhcccCc-------------------------------------------------------
Confidence            9999999999999999996543210                                                       


Q ss_pred             ccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---C
Q 002736          192 AYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---P  268 (886)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---p  268 (886)
                                                         .-.+...|||.|||||++.+.+|+..+|+||||||||||+.   |
T Consensus       155 -----------------------------------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PP  199 (808)
T KOG0597|consen  155 -----------------------------------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPP  199 (808)
T ss_pred             -----------------------------------eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCC
Confidence                                               02344589999999999999999999999999999999999   7


Q ss_pred             CCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          269 FSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       269 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      |+...-...+..++.....+|.  ..++.+..|++.+|.+||.+|.+..+++.|||.++.
T Consensus       200 F~a~si~~Lv~~I~~d~v~~p~--~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~  257 (808)
T KOG0597|consen  200 FYARSITQLVKSILKDPVKPPS--TASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGK  257 (808)
T ss_pred             chHHHHHHHHHHHhcCCCCCcc--cccHHHHHHHHHHhhcChhhcccHHHHhcChHHhhh
Confidence            7666555555555555555554  567889999999999999999999999999998753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=3.6e-31  Score=265.26  Aligned_cols=267  Identities=18%  Similarity=0.327  Sum_probs=226.7

Q ss_pred             cccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEe
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       535 ~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~  614 (886)
                      ..++|..|++|++||-.+..+...|     .||.+.|.|+.|+.  +.+++|+.|.+|+|||+++...       ....+
T Consensus       209 kiVSGlrDnTikiWD~n~~~c~~~L-----~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~-------l~tli  274 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNSLECLKIL-----TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEP-------LNTLI  274 (499)
T ss_pred             hhhcccccCceEEeccccHHHHHhh-----hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCch-------hhHHh
Confidence            4588899999999999998887655     78999999999875  5999999999999999987422       12345


Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCce---EEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCc
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ---VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN  691 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~---~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~  691 (886)
                      .|...|..+.|+   ..+++|++.|.++.+||+....   +.+.+.+|.+.|+.++|+   ..+++++|.|.+|++|++.
T Consensus       275 hHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  275 HHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             hhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEecc
Confidence            688899999997   5799999999999999997654   345678999999999997   3599999999999999999


Q ss_pred             hhhhhhccCceeeeeec-CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEE
Q 002736          692 QAILLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSA  770 (886)
Q Consensus       692 ~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sg  770 (886)
                      +       ...+.++.. +..|.|+++.   ++++++||.|.+|++||+..+.. +..++||+.-|.+|.| +.+.++||
T Consensus       349 t-------~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRF-d~krIVSG  416 (499)
T KOG0281|consen  349 T-------CEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF-DNKRIVSG  416 (499)
T ss_pred             c-------eeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHH-HHHHhchHHhhhheee-cCceeeec
Confidence            9       777777764 5679999986   78999999999999999999985 9999999999999999 57889999


Q ss_pred             ECCCcEEEEeCCCCCcc---ccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcc
Q 002736          771 STDNTLKLWDLSMCTSR---VIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA  835 (886)
Q Consensus       771 s~Dg~i~lwd~~~~~~~---~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~  835 (886)
                      ..||+|++||+......   ...-++.++..|++.|..+.|  |...|++++.|.+|-|||+..+.+.
T Consensus       417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            99999999999875421   111257788889999998888  4568999999999999999876554

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=279.56  Aligned_cols=216  Identities=16%  Similarity=0.167  Sum_probs=167.0

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .+|+|.....  -.+|||++.++|    .......++++|.| .+||+.+.|+.. ...+++..+..|++++++||+|||
T Consensus        70 ~l~kE~~~ms--l~~HPNIv~~~~----sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH  143 (516)
T KOG0582|consen   70 ALRKEVQTMS--LIDHPNIVTYHC----SFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLH  143 (516)
T ss_pred             HHHHHHHHhh--hcCCCCcceEEE----EEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH
Confidence            4466654444  358999999877    33445678889998 999999999542 345899999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      .+|-||||||+.||||+.+|.|||+|||+....-... .                                         
T Consensus       144 ~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G-~-----------------------------------------  181 (516)
T KOG0582|consen  144 QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSG-D-----------------------------------------  181 (516)
T ss_pred             hcCceecccccccEEEcCCCcEEEcCceeeeeecccC-c-----------------------------------------
Confidence            9999999999999999999999999999873221100 0                                         


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC--CCCCcccccch
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG--APVSCASDIYR  257 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~--~~~s~~sDIwS  257 (886)
                                      +                            ........+||++|||||++..  ..|++|+||||
T Consensus       182 ----------------R----------------------------~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwS  217 (516)
T KOG0582|consen  182 ----------------R----------------------------QVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWS  217 (516)
T ss_pred             ----------------e----------------------------eeEeeccccCcccccChHHhhhcccCccchhhhhh
Confidence                            0                            0001134599999999999654  45999999999


Q ss_pred             HHHHHHHHhc---CCCCCchhhHHhHhhccCCCChh--------hhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ--------LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       258 lGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                      ||++..||.+   ||.........+..+...+..+.        .......+..++..||++||.+||||+++|+|+||+
T Consensus       218 fGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk  297 (516)
T KOG0582|consen  218 FGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFK  297 (516)
T ss_pred             hhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHh
Confidence            9999999999   88776666666666665543111        112234567999999999999999999999999998


Q ss_pred             CCc
Q 002736          327 EPR  329 (886)
Q Consensus       327 ~~~  329 (886)
                      ...
T Consensus       298 ~~k  300 (516)
T KOG0582|consen  298 KAK  300 (516)
T ss_pred             hcc
Confidence            754

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.3e-32  Score=280.33  Aligned_cols=214  Identities=18%  Similarity=0.207  Sum_probs=164.1

Q ss_pred             cCceeecccccccCCCCCCcccccccc-CCceEEEEeeCCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccC
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAA-IDPFVHAIEWGDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQG  102 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~e~~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~g  102 (886)
                      ++...+...+|+|++++..-+...... .-...++|||..-+|.+.++.   .+..++..+++-|..||+.||.|||+.|
T Consensus        66 rEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~  145 (364)
T KOG0658|consen   66 RELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG  145 (364)
T ss_pred             HHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC
Confidence            344444477899888766623332222 224568999999999999963   3578999999999999999999999999


Q ss_pred             eeecccCCcceeeccC-CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcc
Q 002736          103 IVVHNVRPSCFVMSSF-NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       103 iiHrDlkP~NIll~~~-~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  181 (886)
                      |+||||||+|+|++++ |.+||+|||.|+.+...+.                                            
T Consensus       146 IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~ep--------------------------------------------  181 (364)
T KOG0658|consen  146 ICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEP--------------------------------------------  181 (364)
T ss_pred             cccCCCChheEEEcCCCCeEEeccCCcceeeccCCC--------------------------------------------
Confidence            9999999999999965 8999999999976533211                                            


Q ss_pred             ccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHH
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGV  260 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGv  260 (886)
                                                                     ...+.-|.+|+|||.+.|.. |+++.||||.||
T Consensus       182 -----------------------------------------------niSYicSRyYRaPELifga~~Yt~~IDiWSaGC  214 (364)
T KOG0658|consen  182 -----------------------------------------------NISYICSRYYRAPELIFGATEYTTSIDIWSAGC  214 (364)
T ss_pred             -----------------------------------------------ceeEEEeccccCHHHHcCccccCceeEEhhhhH
Confidence                                                           12347799999999999965 999999999999


Q ss_pred             HHHHHhc--CCCCCchhhHHhHhhccC-------------------CCC----h-----hhhccChhhHHHHHHccCCCC
Q 002736          261 LLFELFC--PFSTGEEKTRTMSSLRHR-------------------VLP----P-----QLLLKFPKEASFCLWLLHPEP  310 (886)
Q Consensus       261 il~eLl~--pf~~~~~~~~~~~~~~~~-------------------~~~----~-----~~~~~~~~~~~li~~~L~~dP  310 (886)
                      ++.||+-  |++.++.....+..+..-                   .+|    .     ......+++.+|+.++|.++|
T Consensus       215 V~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P  294 (364)
T KOG0658|consen  215 VMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSP  294 (364)
T ss_pred             HHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccCh
Confidence            9999998  777765444333222110                   001    1     123356788899999999999


Q ss_pred             CCCCCHHHHhcCCCCCCCcCc
Q 002736          311 SGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       311 ~~Rps~~eil~h~~~~~~~~~  331 (886)
                      .+|.++.|++.||||++...+
T Consensus       295 ~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  295 SKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             hhcCCHHHHhcchhhHHhhCc
Confidence            999999999999999976544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.3e-29  Score=277.29  Aligned_cols=283  Identities=17%  Similarity=0.256  Sum_probs=243.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEE
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd  646 (886)
                      -++.|.+++|+|.-..++|+--+|.|++||+.-...       .-....|.++|..|+|+| ...+++||+.|-+|+||+
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-------i~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-------IDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhH-------HhhhhccCCccceeeecC-CCCeEEecCCccEEEEEe
Confidence            467899999999999999999999999999864211       112346999999999999 689999999999999999


Q ss_pred             CCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCCCcEE
Q 002736          647 VSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDSGRSL  725 (886)
Q Consensus       647 ~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l  725 (886)
                      ..+.+++.++.+|-+-|..+.|++ .--+++|+|+|.+|+||+..+       +.++..+.+ ...|.|.+|+|. ..++
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqs-------r~~iavltGHnHYVMcAqFhpt-EDlI  150 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQS-------RKCIAVLTGHNHYVMCAQFHPT-EDLI  150 (1202)
T ss_pred             cccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccC-------CceEEEEecCceEEEeeccCCc-cceE
Confidence            999999999999999999999997 777999999999999999999       888888775 456999999998 7899


Q ss_pred             EEEeCCCeEEEEecCCCC----------------------------cceEEEecCCCCeEEEEec-CCCEEEEEECCCcE
Q 002736          726 AFGSADHRIYYYDLRNSK----------------------------IPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTL  776 (886)
Q Consensus       726 ~~gs~Dg~I~vwDlr~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i  776 (886)
                      +++|-|.+|++||+...+                            ...+.+.||...|+-++|+ .-.+|+||+.|..|
T Consensus       151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV  230 (1202)
T KOG0292|consen  151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV  230 (1202)
T ss_pred             EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence            999999999999975321                            1134678999999999997 66899999999999


Q ss_pred             EEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCC
Q 002736          777 KLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQ  856 (886)
Q Consensus       777 ~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  856 (886)
                      ++|..+..+.    -.+.+..||.+.|.++-|+|....|++.|+|++|+|||+...+.+.+|+-.+             +
T Consensus       231 KlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren-------------d  293 (1202)
T KOG0292|consen  231 KLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN-------------D  293 (1202)
T ss_pred             eEEEeccccc----eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC-------------C
Confidence            9999987653    3467889999999999999999999999999999999999999998876433             3


Q ss_pred             cEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          857 FISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       857 ~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      .-+.++-+|..+  |.+|+.|+-+-||.+
T Consensus       294 RFW~laahP~lN--LfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  294 RFWILAAHPELN--LFAAGHDSGMIVFKL  320 (1202)
T ss_pred             eEEEEEecCCcc--eeeeecCCceEEEEE
Confidence            488999999999  666666666777764

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-32  Score=285.09  Aligned_cols=207  Identities=17%  Similarity=0.205  Sum_probs=166.9

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      .+..++++.+++++..+|+ .+.   ....+.++||| .||++.+.|+.. ..+.+.++..|+++++.||+|||+++.+|
T Consensus        60 qei~~Ls~~~~~~it~yyg-syl---~g~~LwiiMey~~gGsv~~lL~~~-~~~~E~~i~~ilre~l~~l~ylH~~~kiH  134 (467)
T KOG0201|consen   60 QEISVLSQCDSPNITEYYG-SYL---KGTKLWIIMEYCGGGSVLDLLKSG-NILDEFEIAVILREVLKGLDYLHSEKKIH  134 (467)
T ss_pred             HHHHHHHhcCcchHHhhhh-hee---ecccHHHHHHHhcCcchhhhhccC-CCCccceeeeehHHHHHHhhhhhhcceec
Confidence            3567788888888877777 222   23457788999 899999999543 45699999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      ||||+.|||+...|.||++|||++-......                                                 
T Consensus       135 rDIKaanil~s~~g~vkl~DfgVa~ql~~~~-------------------------------------------------  165 (467)
T KOG0201|consen  135 RDIKAANILLSESGDVKLADFGVAGQLTNTV-------------------------------------------------  165 (467)
T ss_pred             ccccccceeEeccCcEEEEecceeeeeechh-------------------------------------------------
Confidence            9999999999999999999999984332110                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                               .+..+.+|||.|||||++.+..|+.++||||||++.+||
T Consensus       166 -----------------------------------------~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEl  204 (467)
T KOG0201|consen  166 -----------------------------------------KRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIEL  204 (467)
T ss_pred             -----------------------------------------hccccccccccccchhhhccccccchhhhhhhhHHHHHH
Confidence                                                     011335999999999999988899999999999999999


Q ss_pred             hc--CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          266 FC--PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       266 l~--pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      ++  |.........++..+.....|..-...++.+++|+..||.+||+.||+|.++|+|+|++..
T Consensus       205 a~GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~a  269 (467)
T KOG0201|consen  205 AKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKRA  269 (467)
T ss_pred             hcCCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHhc
Confidence            99  5545555555555555544444444566779999999999999999999999999999874

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-30  Score=285.19  Aligned_cols=195  Identities=22%  Similarity=0.262  Sum_probs=164.9

Q ss_pred             cccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceee
Q 002736           37 HLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVM  115 (886)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll  115 (886)
                      |+|++.++. ++++   .+.++++||+ .||.|.+.|.+.  .+++.++..+++||+++|.|||++||+||||||+|||+
T Consensus        95 hpniv~l~~-~~e~---~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~  168 (382)
T KOG0032|consen   95 HPNIVQLKD-AFED---PDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLL  168 (382)
T ss_pred             CCCEEEEEE-EEEc---CCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeee
Confidence            888888777 5544   3578999999 889999999655  38999999999999999999999999999999999999


Q ss_pred             ccC----CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCC
Q 002736          116 SSF----NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSS  191 (886)
Q Consensus       116 ~~~----~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  191 (886)
                      ...    +.+|++|||++.......                                                       
T Consensus       169 ~~~~~~~~~ik~~DFGla~~~~~~~-------------------------------------------------------  193 (382)
T KOG0032|consen  169 ASKDEGSGRIKLIDFGLAKFIKPGE-------------------------------------------------------  193 (382)
T ss_pred             ccccCCCCcEEEeeCCCceEccCCc-------------------------------------------------------
Confidence            633    479999999996543210                                                       


Q ss_pred             ccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---C
Q 002736          192 AYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---P  268 (886)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---p  268 (886)
                                                          .....+||+.|+|||++.+.+|+..+||||+||++|.|+|   |
T Consensus       194 ------------------------------------~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~P  237 (382)
T KOG0032|consen  194 ------------------------------------RLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPP  237 (382)
T ss_pred             ------------------------------------eEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCC
Confidence                                                2334599999999999998999999999999999999999   8


Q ss_pred             CCCCchhhHHhHhhccC--CCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          269 FSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       269 f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      |............+...  +..+.|...+..+.+|+..||..||.+|+|+.++|+|||+...
T Consensus       238 F~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~  299 (382)
T KOG0032|consen  238 FWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSI  299 (382)
T ss_pred             CcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcCccccCC
Confidence            87776555555444443  4466778888999999999999999999999999999999875

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.9e-31  Score=287.76  Aligned_cols=206  Identities=18%  Similarity=0.189  Sum_probs=172.6

Q ss_pred             cCceeecccccccCCCCCCccccccccCCc-eEEEEee-CCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCe
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDP-FVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGI  103 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~e~-~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~gi  103 (886)
                      .++.+++...||+++.+...    ..+.+. .+|+|+| +||+|.+.|++.. ..++++.+..+|.||+.||+|||+++|
T Consensus        52 ~E~~lis~~~hP~iv~y~ds----~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~i  127 (426)
T KOG0589|consen   52 QEMDLLSKLLHPNIVEYKDS----FEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRV  127 (426)
T ss_pred             HHHHHHHhccCCCeeeeccc----hhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence            45566777899999998872    233455 8999999 9999999996554 578999999999999999999999999


Q ss_pred             eecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccc
Q 002736          104 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSE  183 (886)
Q Consensus       104 iHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  183 (886)
                      +|||||++||+++.++.||+.|||+++..+.+..                                              
T Consensus       128 LHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~----------------------------------------------  161 (426)
T KOG0589|consen  128 LHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS----------------------------------------------  161 (426)
T ss_pred             hcccchhhhhhccccCceeecchhhhhhcCCchh----------------------------------------------
Confidence            9999999999999999999999999987654420                                              


Q ss_pred             ccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHH
Q 002736          184 ASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLF  263 (886)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~  263 (886)
                                                                  ....++||+.||+||.+.+.+|+.++|||||||++|
T Consensus       162 --------------------------------------------~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~y  197 (426)
T KOG0589|consen  162 --------------------------------------------LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLY  197 (426)
T ss_pred             --------------------------------------------hhheecCCCcccCHHHhCCCCCCccCcchhhcchHH
Confidence                                                        112359999999999999999999999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      ||++   +|...+.....+++.. ....|.+...+.++..++..||..+|..||++.++|.+|.+..
T Consensus       198 Em~~lk~aF~a~~m~~Li~ki~~-~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~P~l~~  263 (426)
T KOG0589|consen  198 EMCTLKPAFKASNMSELILKINR-GLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRRPHLLR  263 (426)
T ss_pred             HHHhcccccCccchHHHHHHHhh-ccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhChhhhh
Confidence            9999   6655555555555444 4466777778889999999999999999999999999876553

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=5.7e-31  Score=289.69  Aligned_cols=202  Identities=19%  Similarity=0.238  Sum_probs=160.2

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ ++.   ..+.++++||| .|++|.+++.+. +.+++.+++.|+.||+.||+|||++||+||||
T Consensus        47 ~~l~~l~hp~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDl  121 (323)
T cd05571          47 RVLQNTRHPFLTALKY-SFQ---THDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALGYLHSCDVVYRDL  121 (323)
T ss_pred             HHHHhCCCCCCCCEEE-EEE---cCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCC
Confidence            3455668888888666 333   35678999999 889999999654 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+||+|||+++.......                                                   
T Consensus       122 kp~NIll~~~~~~kl~DfG~a~~~~~~~~---------------------------------------------------  150 (323)
T cd05571         122 KLENLMLDKDGHIKITDFGLCKEGISDGA---------------------------------------------------  150 (323)
T ss_pred             CHHHEEECCCCCEEEeeCCCCcccccCCC---------------------------------------------------
Confidence            99999999999999999999853211000                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             .....+||+.|+|||++.+..++.++|||||||++|||++ 
T Consensus       151 ---------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg  191 (323)
T cd05571         151 ---------------------------------------TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  191 (323)
T ss_pred             ---------------------------------------cccceecCccccChhhhcCCCCCccccCcccchhhhhhhcC
Confidence                                                   0112378999999999999889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                        ||.................  ..+....+.+.+||.+||+.||.+||     ++.++++||||...
T Consensus       192 ~~Pf~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~  257 (323)
T cd05571         192 RLPFYNQDHEKLFELILMEEI--RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASI  257 (323)
T ss_pred             CCCCCCCCHHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence              7765544333322222221  22234567889999999999999999     89999999999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1e-28  Score=281.98  Aligned_cols=271  Identities=21%  Similarity=0.364  Sum_probs=229.4

Q ss_pred             ccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEec
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .+.+..++++++|+..+.+. ..+  ..+.+|...|++++|+||++++++|+.|++|+|||+..      .........+
T Consensus       174 l~~~~~~~~i~~~~~~~~~~-~~~--~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~------~~~~~~~l~g  244 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKS-NLL--RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD------DGRNLKTLKG  244 (456)
T ss_pred             EEEccCCCcEEEeecccccc-hhh--ccccccccceeeeEECCCCcEEEEecCCceEEEeeccC------CCeEEEEecC
Confidence            57777899999999977663 111  33378999999999999999999999999999999943      1123344558


Q ss_pred             CCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhh
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       616 ~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~  695 (886)
                      |...|++++|+|. +++++||++|++|+|||+++++++..+.+|...|.+++|++ ++++|++++.|+.|+|||+.+...
T Consensus       245 H~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  245 HSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             CCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCce
Confidence            9999999999995 59999999999999999999999999999999999999998 999999999999999999998321


Q ss_pred             hhccCceeeeeec--CC-CeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEe---c-CCCEEE
Q 002736          696 LLHLGVSIGTIKT--KA-NVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF---V-DATTLV  768 (886)
Q Consensus       696 ~~~~~~~~~~~~~--~~-~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f---~-~~~~l~  768 (886)
                      .     +...+..  .. .+++++|+|+ +.++++++.|+.+++||++.... +..+.+|...+.++..   + .+.+++
T Consensus       323 ~-----~~~~~~~~~~~~~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  323 L-----CLKLLSGAENSAPVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             e-----eeecccCCCCCCceeEEEECCC-CcEEEEecCCCeEEEEEccCCcc-eeeecccCCcceeEecccccCCCCeEE
Confidence            0     2333332  12 6899999999 99999999999999999999885 7888888876533321   2 889999


Q ss_pred             EEECCCcEEEEeCCCCCccccCCCceEeecC-CCceeEEEEecCCCEEEEEc--CCCcEEEEecC
Q 002736          769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGH-TNVKNFVGLSVWDGYVATGS--ETNEVFVYHKA  830 (886)
Q Consensus       769 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h-~~~v~~v~~sp~g~~lasgs--~Dg~v~iwd~~  830 (886)
                      +|+.|+.|.+||+.+.      ..+..+.+| ...+..+.++|...++++++  .|+.+++|...
T Consensus       396 sg~~d~~v~~~~~~s~------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  396 SGSEDGSVYVWDSSSG------GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEeCCceEEEEeCCcc------chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999999999986      458889999 89999999999999999999  79999999643

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=1.1e-30  Score=283.11  Aligned_cols=203  Identities=17%  Similarity=0.193  Sum_probs=154.5

Q ss_pred             eecccccccCCCCCCccccc--cccCCceEEEEeeCCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           31 ELTHGDHLRNQGGLSGVCEN--EAAIDPFVHAIEWGDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~e~~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      .+...+|+|++..++ +|..  ......++++|||.+++|.+++... ...+++.+++.++.||+.||.|||++||+|||
T Consensus        57 ~l~~~~hpniv~~~~-~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~d  135 (290)
T cd07862          57 HLETFEHPNVVRLFD-VCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRD  135 (290)
T ss_pred             hhcccCCCCcceEEE-EEecccCCCCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence            344567899988776 5532  1234568999999888999999543 34589999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++.+|++|||++.......                                                   
T Consensus       136 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------------  164 (290)
T cd07862         136 LKPQNILVTSSGQIKLADFGLARIYSFQM---------------------------------------------------  164 (290)
T ss_pred             CCHHHEEEcCCCCEEEccccceEeccCCc---------------------------------------------------
Confidence            99999999999999999999985331110                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......||++|+|||.+.+..++.++|||||||++|||++
T Consensus       165 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  204 (290)
T cd07862         165 ----------------------------------------ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR  204 (290)
T ss_pred             ----------------------------------------ccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHc
Confidence                                                    0111368999999999988889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCC--C-----------------------hhhhccChhhHHHHHHccCCCCCCCCCHHHH
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVL--P-----------------------PQLLLKFPKEASFCLWLLHPEPSGRPKMGEL  319 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ei  319 (886)
                         ||............+.....  +                       .......+.+.+|+.+||+.||++|||+.|+
T Consensus       205 g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~  284 (290)
T cd07862         205 RKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA  284 (290)
T ss_pred             CCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHH
Confidence               55544333222222111000  0                       0112344566799999999999999999999


Q ss_pred             hcCCCC
Q 002736          320 LQSEFL  325 (886)
Q Consensus       320 l~h~~~  325 (886)
                      |+||||
T Consensus       285 l~hp~f  290 (290)
T cd07862         285 LSHPYF  290 (290)
T ss_pred             hcCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=251.43  Aligned_cols=271  Identities=16%  Similarity=0.234  Sum_probs=231.3

Q ss_pred             cccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      +.-|++|..|+++++||+.+++.+.+|     .+|...|..+++++--.|+++++.|+.||.||++...       ..-.
T Consensus       163 n~wf~tgs~DrtikIwDlatg~Lkltl-----tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-------vIR~  230 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATGQLKLTL-----TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-------VIRH  230 (460)
T ss_pred             ceeEEecCCCceeEEEEcccCeEEEee-----cchhheeeeeeecccCceEEEecCCCeeEEEechhhh-------hHHH
Confidence            345688899999999999999999888     6899999999999999999999999999999998621       1112


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      ..+|-+.|.|++.+| .-..|++|+.|.+++|||+++...+..+.+|..+|.+|.+.|.+ -.+++||.|++|++||++.
T Consensus       231 YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~a  308 (460)
T KOG0285|consen  231 YHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRA  308 (460)
T ss_pred             hccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeecc
Confidence            346889999999999 68899999999999999999999999999999999999999844 5889999999999999998


Q ss_pred             hhhhhccCceeeee-ecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEEE
Q 002736          693 AILLLHLGVSIGTI-KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS  771 (886)
Q Consensus       693 ~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sgs  771 (886)
                             ++...++ .++..|.|++.+|. ...||+++.|. |+.|++..+.. +..+.+|+.-|++++..+..++++|+
T Consensus       309 -------gkt~~tlt~hkksvral~lhP~-e~~fASas~dn-ik~w~~p~g~f-~~nlsgh~~iintl~~nsD~v~~~G~  378 (460)
T KOG0285|consen  309 -------GKTMITLTHHKKSVRALCLHPK-ENLFASASPDN-IKQWKLPEGEF-LQNLSGHNAIINTLSVNSDGVLVSGG  378 (460)
T ss_pred             -------CceeEeeecccceeeEEecCCc-hhhhhccCCcc-ceeccCCccch-hhccccccceeeeeeeccCceEEEcC
Confidence                   5544444 45778999999999 78899998875 89999998875 67799999999999998778999999


Q ss_pred             CCCcEEEEeCCCCCccccCCCceEeec-----CCCceeEEEEecCCCEEEEEcCCCcEEEEecC
Q 002736          772 TDNTLKLWDLSMCTSRVIDTPLHSFTG-----HTNVKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       772 ~Dg~i~lwd~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~  830 (886)
                      ..|.|.+||.+++..   ++...+..+     -...|.+.+|...|..|++|..|.+|++|.-.
T Consensus       379 dng~~~fwdwksg~n---yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  379 DNGSIMFWDWKSGHN---YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             CceEEEEEecCcCcc---cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            999999999998753   122222211     23458889999999999999999999999754

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=9e-31  Score=285.59  Aligned_cols=211  Identities=16%  Similarity=0.215  Sum_probs=158.2

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ...+...+|++++..++ ++.   ..+.++++|||.+++|.+++.+....+++.+++.++.||+.||.|||++||+||||
T Consensus        54 ~~~l~~l~h~niv~~~~-~~~---~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dl  129 (303)
T cd07869          54 ASLLKGLKHANIVLLHD-IIH---TKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDL  129 (303)
T ss_pred             HHHHhhCCCCCcCeEEE-EEe---cCCeEEEEEECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            34455668899888766 443   34578999999889999999766667899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+|++|||++........                                                   
T Consensus       130 kp~Nill~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------------  158 (303)
T cd07869         130 KPQNLLISDTGELKLADFGLARAKSVPSH---------------------------------------------------  158 (303)
T ss_pred             CHHHEEECCCCCEEECCCCcceeccCCCc---------------------------------------------------
Confidence            99999999999999999999853211100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......||++|+|||++.+. .++.++|||||||++|||++
T Consensus       159 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~  199 (303)
T cd07869         159 ---------------------------------------TYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQ  199 (303)
T ss_pred             ---------------------------------------cCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHh
Confidence                                                   00112678999999998764 48999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhcc---CC----------------------CChhh------hccChhhHHHHHHccCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRH---RV----------------------LPPQL------LLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~---~~----------------------~~~~~------~~~~~~~~~li~~~L~~dP~~R  313 (886)
                         ||............+..   ..                      .+..+      ....+.+.+|+.+||++||.+|
T Consensus       200 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R  279 (303)
T cd07869         200 GVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNR  279 (303)
T ss_pred             CCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhc
Confidence               77554332222111100   00                      00000      0123467799999999999999


Q ss_pred             CCHHHHhcCCCCCCCcCchH
Q 002736          314 PKMGELLQSEFLNEPRDSME  333 (886)
Q Consensus       314 ps~~eil~h~~~~~~~~~~~  333 (886)
                      ||+.|+++||||...+..+.
T Consensus       280 ~s~~~~l~h~~f~~~~~~~~  299 (303)
T cd07869         280 LSAQAALSHEYFSDLPPRLW  299 (303)
T ss_pred             cCHHHHhcCcccccCChhhh
Confidence            99999999999998655433

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=287.51  Aligned_cols=193  Identities=20%  Similarity=0.276  Sum_probs=152.7

Q ss_pred             cCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeecc
Q 002736           39 RNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS  117 (886)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~  117 (886)
                      |.|+.+.    ...--+++|||+|+.+.+|.++|+.+. ..|+...++.|+.||+.||.+||+.||||+|||||||||..
T Consensus       249 n~Vrm~d----~F~fr~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~  324 (586)
T KOG0667|consen  249 NIVRMLD----YFYFRNHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKD  324 (586)
T ss_pred             eEEEeee----ccccccceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeecc
Confidence            4466555    444678999999999999999997653 56899999999999999999999999999999999999974


Q ss_pred             C--CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCc
Q 002736          118 F--NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGT  195 (886)
Q Consensus       118 ~--~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  195 (886)
                      .  ..||+||||++.....                                                             
T Consensus       325 ~~r~~vKVIDFGSSc~~~q-------------------------------------------------------------  343 (586)
T KOG0667|consen  325 PKRSRIKVIDFGSSCFESQ-------------------------------------------------------------  343 (586)
T ss_pred             CCcCceeEEecccccccCC-------------------------------------------------------------
Confidence            4  3699999999843311                                                             


Q ss_pred             ccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--CCCCCc
Q 002736          196 HVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGE  273 (886)
Q Consensus       196 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--pf~~~~  273 (886)
                                                      ....++.+..|+|||+|.|.+|+.+.||||||||++||++  |+++++
T Consensus       344 --------------------------------~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  344 --------------------------------RVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             --------------------------------cceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence                                            1124577999999999999999999999999999999999  888887


Q ss_pred             hhhHHhHhhccC------------------------------------------------------CCChhh-------h
Q 002736          274 EKTRTMSSLRHR------------------------------------------------------VLPPQL-------L  292 (886)
Q Consensus       274 ~~~~~~~~~~~~------------------------------------------------------~~~~~~-------~  292 (886)
                      .....+..+.+-                                                      ..|+..       .
T Consensus       392 ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~  471 (586)
T KOG0667|consen  392 NEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLP  471 (586)
T ss_pred             CHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcc
Confidence            666554333210                                                      000000       0


Q ss_pred             -ccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          293 -LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       293 -~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                       .....+.+|+.+||.+||.+|+|+.|+|+||||...
T Consensus       472 ~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~  508 (586)
T KOG0667|consen  472 KADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGT  508 (586)
T ss_pred             cccHHHHHHHHHHHhccCchhcCCHHHHhcCcccccc
Confidence             001234699999999999999999999999999853

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.5e-28  Score=268.77  Aligned_cols=290  Identities=21%  Similarity=0.302  Sum_probs=247.6

Q ss_pred             CcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCc
Q 002736          562 GDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGV  641 (886)
Q Consensus       562 ~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~  641 (886)
                      -.+.+|.+.|++++|+.|...+++|+ .+.|+||+..+.        ..+..+.+. -+.|..|.| .+.++++|...|.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~--------kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL--------KCIRTITCG-YILASKFVP-GDRYIVLGTKNGE  435 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc--------ceeEEeccc-cEEEEEecC-CCceEEEeccCCc
Confidence            35678999999999999887777665 489999998763        333444444 788899998 6889999999999


Q ss_pred             EEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccC------ceeeeeecCCCeEEE
Q 002736          642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLG------VSIGTIKTKANVCCV  715 (886)
Q Consensus       642 V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~------~~~~~~~~~~~v~~v  715 (886)
                      +.++|+.+...+.+++.|.+.||+++.+| ++..+++||.|.+|++||+.-...+.-..      ....++.....|.|+
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v  514 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV  514 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE
Confidence            99999999999999999999999999998 99999999999999999985421100001      112344557889999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCce
Q 002736          716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLH  794 (886)
Q Consensus       716 ~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~  794 (886)
                      .+||+ +++||+|--|++|++|-+.+.+- ..++.||.-+|.|+..+ |+.+++|||.|.+|++|-+.-+.|      -+
T Consensus       515 ~~Spd-gk~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC------HK  586 (888)
T KOG0306|consen  515 SVSPD-GKLLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC------HK  586 (888)
T ss_pred             EEcCC-CcEEEEEeccCeEEEEEecceee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh------hh
Confidence            99999 99999999999999999999885 67888999999999997 999999999999999999988854      68


Q ss_pred             EeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEE
Q 002736          795 SFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAA  874 (886)
Q Consensus       795 ~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~  874 (886)
                      ++-+|...|.+|.|-|....+.++|.|+.|+-||-..-+.++.             .++|..-|+|++.+|+|. +++++
T Consensus       587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-------------L~~H~~ev~cLav~~~G~-~vvs~  652 (888)
T KOG0306|consen  587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-------------LDGHHSEVWCLAVSPNGS-FVVSS  652 (888)
T ss_pred             hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhee-------------eccchheeeeeEEcCCCC-eEEec
Confidence            8999999999999999999999999999999999776555533             356677799999999999 99999


Q ss_pred             eCCCCEEEEEe
Q 002736          875 NSSGNIKILEM  885 (886)
Q Consensus       875 ~~dg~I~iw~l  885 (886)
                      +.|.+|++|+.
T Consensus       653 shD~sIRlwE~  663 (888)
T KOG0306|consen  653 SHDKSIRLWER  663 (888)
T ss_pred             cCCceeEeeec
Confidence            99999999974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.9e-29  Score=266.56  Aligned_cols=239  Identities=21%  Similarity=0.329  Sum_probs=219.2

Q ss_pred             CCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhh
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       616 ~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~  695 (886)
                      +...|.+|.++| ....++++-++|.|.|||.++...++.|.-..-+|.+..|-+ .-+++++|++|..|++++.++   
T Consensus        12 rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt---   86 (794)
T KOG0276|consen   12 RSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNT---   86 (794)
T ss_pred             cCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEeccc---
Confidence            667899999999 688888999999999999999999999988889999999986 789999999999999999999   


Q ss_pred             hhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEEEEEC
Q 002736          696 LLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSAST  772 (886)
Q Consensus       696 ~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~sgs~  772 (886)
                          ...+..+. |...|.|++.+|. ..+++++|.|-+|++||..+.-.+.++|.||...|.+|+|.  |.+.+||||-
T Consensus        87 ----~ekV~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   87 ----GEKVKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             ----ceeeEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence                67777776 4567999999999 78999999999999999998776789999999999999995  8899999999


Q ss_pred             CCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCC--CEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCc
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD--GYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPE  850 (886)
Q Consensus       773 Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g--~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  850 (886)
                      |++|++|.+.+.      .|..++.||...|+||++-+-|  .||++|+.|.+|+|||..+..++.++            
T Consensus       162 DrTVKVWslgs~------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL------------  223 (794)
T KOG0276|consen  162 DRTVKVWSLGSP------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL------------  223 (794)
T ss_pred             cccEEEEEcCCC------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh------------
Confidence            999999999987      5689999999999999999876  49999999999999999998888544            


Q ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          851 TDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       851 ~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                       ++|.+-|++++|+|.-+ .+++|+.||+++||.
T Consensus       224 -eGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWh  255 (794)
T KOG0276|consen  224 -EGHTNNVSFVFFHPELP-IIISGSEDGTVRIWN  255 (794)
T ss_pred             -hcccccceEEEecCCCc-EEEEecCCccEEEec
Confidence             56777899999999999 999999999999996

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-30  Score=273.02  Aligned_cols=199  Identities=18%  Similarity=0.238  Sum_probs=163.2

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      ..|+|++++|. |..   ....+|++.|+ +||+|++||-++...+++..+++||.||+.|+.|+|...||||||||+|+
T Consensus        74 VQHpNiVRLYE-ViD---TQTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENV  149 (864)
T KOG4717|consen   74 VQHPNIVRLYE-VID---TQTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENV  149 (864)
T ss_pred             hcCcCeeeeee-hhc---ccceEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCccee
Confidence            46899999888 332   34568888999 88899999988888899999999999999999999999999999999998


Q ss_pred             eec-cCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCc
Q 002736          114 VMS-SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSA  192 (886)
Q Consensus       114 ll~-~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (886)
                      ++- .-|-||++|||++..+...                                                         
T Consensus       150 VFFEKlGlVKLTDFGFSNkf~PG---------------------------------------------------------  172 (864)
T KOG4717|consen  150 VFFEKLGLVKLTDFGFSNKFQPG---------------------------------------------------------  172 (864)
T ss_pred             EEeeecCceEeeeccccccCCCc---------------------------------------------------------
Confidence            875 6799999999998543211                                                         


Q ss_pred             cCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCC-cccccchHHHHHHHHhc---C
Q 002736          193 YGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVS-CASDIYRLGVLLFELFC---P  268 (886)
Q Consensus       193 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s-~~sDIwSlGvil~eLl~---p  268 (886)
                                                        .+.++.||+..|-|||++.|..|+ +++||||||||||.|+|   |
T Consensus       173 ----------------------------------~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~P  218 (864)
T KOG4717|consen  173 ----------------------------------KKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPP  218 (864)
T ss_pred             ----------------------------------chhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCc
Confidence                                              023445999999999999999985 58999999999999999   8


Q ss_pred             CCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          269 FSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       269 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      |...++....-.++-....-  +...+.++.+||..||..||.+|.+.++|..++|++....
T Consensus       219 FqeANDSETLTmImDCKYtv--PshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~  278 (864)
T KOG4717|consen  219 FQEANDSETLTMIMDCKYTV--PSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGDR  278 (864)
T ss_pred             cccccchhhhhhhhcccccC--chhhhHHHHHHHHHHHhcCchhhccHHHHhccccccCCCC
Confidence            86666555544444333322  2344578999999999999999999999999999987543

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2e-30  Score=284.02  Aligned_cols=203  Identities=16%  Similarity=0.190  Sum_probs=160.2

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+.+.+|++++..++ ++.   ..+.++++||| .|++|.+++.+. +.+++.+++.++.||+.||.|||++||+|||
T Consensus        44 ~~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrD  118 (312)
T cd05585          44 RTVLAQVNCPFIVPLKF-SFQ---SPEKLYLVLAFINGGELFHHLQRE-GRFDLSRARFYTAELLCALENLHKFNVIYRD  118 (312)
T ss_pred             HHHHHhCCCCcEeceee-EEe---cCCeEEEEEcCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCC
Confidence            34455678999988766 443   34678999999 889999999654 5789999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++.+|++|||+++.......                                                  
T Consensus       119 lkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--------------------------------------------------  148 (312)
T cd05585         119 LKPENILLDYQGHIALCDFGLCKLNMKDDD--------------------------------------------------  148 (312)
T ss_pred             CCHHHeEECCCCcEEEEECcccccCccCCC--------------------------------------------------
Confidence            999999999999999999999853211100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              .....+||+.|+|||++.+..++.++|||||||++|||++
T Consensus       149 ----------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~t  188 (312)
T cd05585         149 ----------------------------------------KTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLT  188 (312)
T ss_pred             ----------------------------------------ccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHh
Confidence                                                    0112378999999999999889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC---CHHHHhcCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP---KMGELLQSEFLNEP  328 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp---s~~eil~h~~~~~~  328 (886)
                         ||............+....  ..+....+.+.+|+.+||.+||.+||   ++.|++.||||...
T Consensus       189 g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~  253 (312)
T cd05585         189 GLPPFYDENVNEMYRKILQEPL--RFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQL  253 (312)
T ss_pred             CCCCcCCCCHHHHHHHHHcCCC--CCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence               7765544433333332221  22234567888999999999999997   58999999999864

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.6e-28  Score=249.95  Aligned_cols=287  Identities=20%  Similarity=0.283  Sum_probs=232.5

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCC--CCeEEEecCCCcE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYI--KSQIASSNFEGVV  642 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~--~~~las~s~Dg~V  642 (886)
                      +-|.+.|.++...  ++.++||++||.++|||...        .......+|.++|.+++|...+  ...+++++.|.++
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G--------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG--------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCC--------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            4589999999988  78999999999999999875        2334556899999999995422  2369999999999


Q ss_pred             EEEECCCceE----EEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhh------------------hhhccC
Q 002736          643 QVWDVSRSQV----LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI------------------LLLHLG  700 (886)
Q Consensus       643 ~iWd~~t~~~----~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~------------------~~~~~~  700 (886)
                      ++|..+.+..    +..-.+|.+.|-+|+..+ ++..+++||-|.+|+||+..+..                  ....-+
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence            9999877643    233359999999999997 99999999999999999932210                  000012


Q ss_pred             ceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEE
Q 002736          701 VSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL  778 (886)
Q Consensus       701 ~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~l  778 (886)
                      .++-++. |..+|.+|.|++.  ..+.++|.|++|+.||+.+++. +.++.+ .++..++.++ ...+|++||.|..|++
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl  326 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL  326 (423)
T ss_pred             CceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccceeeecCCCCceee
Confidence            2333333 5678999999984  5799999999999999999885 555554 4678999997 7889999999999999


Q ss_pred             EeCCCCCccccCCCceEeecCCCceeEEEEecCCC-EEEEEcCCCcEEEEecCCCC-cceeeccCCCCCCCCCccccCCC
Q 002736          779 WDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG-YVATGSETNEVFVYHKAFPM-PALSFNFNHADPLSGPETDDAAQ  856 (886)
Q Consensus       779 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~-~lasgs~Dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  856 (886)
                      ||-+++..   .-..++|.||++.|.+|.|+|... .+++||.||++++||+++.+ |+..+             .+|..
T Consensus       327 ~DPR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-------------~~h~D  390 (423)
T KOG0313|consen  327 WDPRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-------------AGHND  390 (423)
T ss_pred             cCCCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-------------ccCCc
Confidence            99998754   245688999999999999999876 68899999999999999877 66543             45678


Q ss_pred             cEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          857 FISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       857 ~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                      .|.++.|... . .+++||.|.+|+|+.
T Consensus       391 Kvl~vdW~~~-~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  391 KVLSVDWNEG-G-LIVSGGADNKLRIFK  416 (423)
T ss_pred             eEEEEeccCC-c-eEEeccCcceEEEec
Confidence            8999999854 4 699999999999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=256.57  Aligned_cols=270  Identities=21%  Similarity=0.309  Sum_probs=234.5

Q ss_pred             ccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEE
Q 002736          534 SGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE  613 (886)
Q Consensus       534 ~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~  613 (886)
                      +++++|..||-+++||+++..+.+++     ..|.+.|..|+++.  +.++|+|.|++||.|.++..         |+..
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~---------p~~t  143 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP---------PLHT  143 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhhee-----ecccCceeeEEecc--cceEEecCCcceeeeeccCC---------ccee
Confidence            46789999999999999998888777     57999999999998  78999999999999998751         5556


Q ss_pred             ecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchh
Q 002736          614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA  693 (886)
Q Consensus       614 ~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~  693 (886)
                      +...+.+..|.-+. ..+.+|||+  -.|.|||.+...++..+.-....|.++.|+|.....|++|..|++|.|+|+++ 
T Consensus       144 ilg~s~~~gIdh~~-~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-  219 (433)
T KOG0268|consen  144 ILGKSVYLGIDHHR-KNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ-  219 (433)
T ss_pred             eecccccccccccc-ccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc-
Confidence            66777777887765 467888887  56899999999999999888899999999999999999999999999999999 


Q ss_pred             hhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEEC
Q 002736          694 ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAST  772 (886)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~  772 (886)
                            ..++..+...-.-+.|+|+|. +-.|++|+.|..++.||+|+...|+.+..+|..+|.+|.|+ .|+.++|||.
T Consensus       220 ------~~Pl~KVi~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  220 ------ASPLKKVILTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             ------CCccceeeeeccccceecCcc-ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence                  777777776777789999995 88999999999999999999999999999999999999997 9999999999


Q ss_pred             CCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcc
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA  835 (886)
Q Consensus       773 Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~  835 (886)
                      |.+|+||.++.+.++...   +  +.--..|.||.||-|.+||++||.|+.|++|.....+.+
T Consensus       293 DksIRIf~~~~~~SRdiY---h--tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  293 DKSIRIFPVNHGHSRDIY---H--TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             cceEEEeecCCCcchhhh---h--HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            999999999988653211   1  112245899999999999999999999999987655443

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.1e-30  Score=250.92  Aligned_cols=201  Identities=17%  Similarity=0.215  Sum_probs=166.7

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      +.-..+|.+|+|++++|+ .   .-.....|+++|| .+|+|...|.. ...++++..+..|++|++.||.|+|.++|||
T Consensus        72 EiEIqs~L~hpnilrlY~-~---fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIh  147 (281)
T KOG0580|consen   72 EIEIQSHLRHPNILRLYG-Y---FHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIH  147 (281)
T ss_pred             eeEeecccCCccHHhhhh-h---eeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCccc
Confidence            344568889999999998 2   3345678999999 88899998863 3467999999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+|+|++..|.+|++|||-+-....                                                   
T Consensus       148 RdiKpenlLlg~~~~lkiAdfGwsV~~p~---------------------------------------------------  176 (281)
T KOG0580|consen  148 RDIKPENLLLGSAGELKIADFGWSVHAPS---------------------------------------------------  176 (281)
T ss_pred             CCCCHHHhccCCCCCeeccCCCceeecCC---------------------------------------------------
Confidence            99999999999999999999998722100                                                   


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                               .+..+.+||.-|.+||.+.+..++.++|+|++||+.||+
T Consensus       177 -----------------------------------------~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yef  215 (281)
T KOG0580|consen  177 -----------------------------------------NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEF  215 (281)
T ss_pred             -----------------------------------------CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHH
Confidence                                                     023446999999999999999999999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhcc-CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRH-RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      +.   ||.+.. ...++..++. ....|  ...+..++++|.+||.++|.+|.+..|++.|||+..
T Consensus       216 lvg~ppFes~~-~~etYkrI~k~~~~~p--~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  216 LVGLPPFESQS-HSETYKRIRKVDLKFP--STISGGAADLISRLLVKNPIERLALTEVMDHPWIVA  278 (281)
T ss_pred             HhcCCchhhhh-hHHHHHHHHHccccCC--cccChhHHHHHHHHhccCccccccHHHHhhhHHHHh
Confidence            98   787666 4444444443 44333  456688899999999999999999999999999864

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.96  E-value=2.1e-30  Score=280.55  Aligned_cols=202  Identities=16%  Similarity=0.208  Sum_probs=153.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|+|++..++ +..   ..+.++++|||.+++|.+++......+++.+++.++.||+.||.|||++||+|||||
T Consensus        55 ~~l~~l~h~niv~~~~-~~~---~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk  130 (288)
T cd07871          55 SLLKNLKHANIVTLHD-IIH---TERCLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLK  130 (288)
T ss_pred             HHHHhCCCCCEeeEEE-EEc---CCCeEEEEEeCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            3455568888888776 333   345789999997789999997665668999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+|++|||+++.......                                                    
T Consensus       131 p~Nil~~~~~~~kl~DfG~~~~~~~~~~----------------------------------------------------  158 (288)
T cd07871         131 PQNLLINEKGELKLADFGLARAKSVPTK----------------------------------------------------  158 (288)
T ss_pred             HHHEEECCCCCEEECcCcceeeccCCCc----------------------------------------------------
Confidence            9999999999999999999853211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ......|+++|+|||.+.+ ..++.++|||||||++|||++ 
T Consensus       159 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g  200 (288)
T cd07871         159 --------------------------------------TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATG  200 (288)
T ss_pred             --------------------------------------cccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhC
Confidence                                                  0011267899999999876 458999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhcc--C------------------CCCh--------hhhccChhhHHHHHHccCCCCCCCCCHH
Q 002736          268 --PFSTGEEKTRTMSSLRH--R------------------VLPP--------QLLLKFPKEASFCLWLLHPEPSGRPKMG  317 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~--~------------------~~~~--------~~~~~~~~~~~li~~~L~~dP~~Rps~~  317 (886)
                        ||...............  .                  .++.        ......+++.+||.+||.+||.+|||++
T Consensus       201 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~  280 (288)
T cd07871         201 RPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAE  280 (288)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHH
Confidence              66544332222111100  0                  0000        0112345678999999999999999999


Q ss_pred             HHhcCCCC
Q 002736          318 ELLQSEFL  325 (886)
Q Consensus       318 eil~h~~~  325 (886)
                      |+|+||||
T Consensus       281 ~~l~hp~f  288 (288)
T cd07871         281 AALRHSYF  288 (288)
T ss_pred             HHhcCCCC
Confidence            99999997

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.2e-30  Score=279.46  Aligned_cols=199  Identities=16%  Similarity=0.125  Sum_probs=158.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++.++. ++.   ..+.++++||| .|++|.+++.+. +.+++..++.++.||+.||.|||++||+||||
T Consensus        53 ~~l~~l~hp~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl  127 (291)
T cd05612          53 RVLKEVSHPFIIRLFW-TEH---DQRFLYMLMEYVPGGELFSYLRNS-GRFSNSTGLFYASEIVCALEYLHSKEIVYRDL  127 (291)
T ss_pred             HHHHhCCCCcHhhhHh-hhc---cCCeEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCC
Confidence            3455668899988776 443   34678999998 889999999654 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+|++|||+++.....                                                     
T Consensus       128 kp~NIli~~~~~~kl~Dfg~~~~~~~~-----------------------------------------------------  154 (291)
T cd05612         128 KPENILLDKEGHIKLTDFGFAKKLRDR-----------------------------------------------------  154 (291)
T ss_pred             CHHHeEECCCCCEEEEecCcchhccCC-----------------------------------------------------
Confidence            999999999999999999998533110                                                     


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                              ....+||+.|+|||++.+..++.++|||||||++|||++ 
T Consensus       155 ----------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g  194 (291)
T cd05612         155 ----------------------------------------TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVG  194 (291)
T ss_pred             ----------------------------------------cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhC
Confidence                                                    001268999999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~  328 (886)
                        ||.................  .......+.+.+|+.+||..||.+||+     +.++++||||...
T Consensus       195 ~~pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  260 (291)
T cd05612         195 YPPFFDDNPFGIYEKILAGKL--EFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSV  260 (291)
T ss_pred             CCCCCCCCHHHHHHHHHhCCc--CCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCC
Confidence              7765544333333222222  122234577889999999999999995     9999999999864

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=5.4e-29  Score=246.51  Aligned_cols=295  Identities=16%  Similarity=0.277  Sum_probs=233.3

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccC---------cccccccceE--EecCCCCeeeEEEeCCCCCe
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN---------ENRDIHYPVV--EMASRSKLSSICWNSYIKSQ  632 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~---------~~~~~~~~~~--~~~~~~~I~~l~~~~~~~~~  632 (886)
                      +..|++++++.+|+|||.++|||+.|..|||+|++..+.         ...+.+.|+.  ...|...|+++.|+| ...+
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~I  186 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETI  186 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhhe
Confidence            456999999999999999999999999999999984221         1122233433  345899999999999 6899


Q ss_pred             EEEecCCCcEEEEECCCceEEEEec--ccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCC
Q 002736          633 IASSNFEGVVQVWDVSRSQVLTEMR--EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKA  710 (886)
Q Consensus       633 las~s~Dg~V~iWd~~t~~~~~~~~--~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~  710 (886)
                      |+||+.|++|+++|+......+.++  ....+|.+++|+| .|.+|++|.+..+++|||+++.+....   ....-.+.+
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvs---anPd~qht~  262 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVS---ANPDDQHTG  262 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeee---cCccccccc
Confidence            9999999999999997654333332  2356899999999 999999999999999999998433211   112224578


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEE-ecCC-CCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCcc
Q 002736          711 NVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL-IGHN-KTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSR  787 (886)
Q Consensus       711 ~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~-~~h~-~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~  787 (886)
                      .|++|.+++. +++.++||.||.|++||--.+++ +.++ ..|. ..|.+..|. ++++++|.+.|.++++|.+.++   
T Consensus       263 ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---  337 (430)
T KOG0640|consen  263 AITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---  337 (430)
T ss_pred             ceeEEEecCC-ccEEEEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---
Confidence            8999999999 99999999999999999877774 5554 3565 458888998 9999999999999999999998   


Q ss_pred             ccCCCceEeecCC-----CceeEEEEecCCCEEEEEcC-CCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEE
Q 002736          788 VIDTPLHSFTGHT-----NVKNFVGLSVWDGYVATGSE-TNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSV  861 (886)
Q Consensus       788 ~~~~~~~~~~~h~-----~~v~~v~~sp~g~~lasgs~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v  861 (886)
                         +++..+.|-.     .--+...|+....|++.-.+ .+.++-||..+...+.-+.            -+|++.|..+
T Consensus       338 ---R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s------------lgHn~a~R~i  402 (430)
T KOG0640|consen  338 ---RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS------------LGHNGAVRWI  402 (430)
T ss_pred             ---ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc------------cCCCCCceEE
Confidence               4577776541     11233457777778777655 5889999999887664333            3577889999


Q ss_pred             EEccCCCcEEEEEeCCCCEEEEE
Q 002736          862 CWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       862 ~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                      ..+|.++ .+++++.|-.+++|-
T Consensus       403 ~HSP~~p-~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  403 VHSPVEP-AFMTCSDDFRARFWY  424 (430)
T ss_pred             EeCCCCC-ceeeecccceeeeee
Confidence            9999999 999999999999994

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.5e-29  Score=259.93  Aligned_cols=287  Identities=19%  Similarity=0.284  Sum_probs=236.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQV  644 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~i  644 (886)
                      -.|.+.|..+.|-++...|+|||.|..|++|+......+   .+  ....+..+.|+.+.|.+ ++.+++++++|+.+++
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---~~--~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---LI--STLAGSLGNITSIDFDS-DNKHVIAASNDKNLRL  245 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---hh--hhhhccCCCcceeeecC-CCceEEeecCCCceee
Confidence            358889999999999999999999999999998653211   11  12234667899999998 5778888888999999


Q ss_pred             EECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcE
Q 002736          645 WDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS  724 (886)
Q Consensus       645 Wd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  724 (886)
                      |++...+...++.+|.+.|+++.|.. ....+++|+.|.+||+||+..       ..+..++-....+..|..+   ...
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k-------~~C~kt~l~~S~cnDI~~~---~~~  314 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQK-------AYCSKTVLPGSQCNDIVCS---ISD  314 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhh-------hheeccccccccccceEec---cee
Confidence            99999999999999999999999985 555599999999999999998       5666666556667777776   347


Q ss_pred             EEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCce
Q 002736          725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK  803 (886)
Q Consensus       725 l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v  803 (886)
                      +++|..|++|++||+|.... ......+. .|+++..+ ++..|.+++.|.++.+.|+++..............+|.  .
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--w  390 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--W  390 (459)
T ss_pred             eeecccccceEEEeccCCce-eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--c
Confidence            99999999999999999884 77777765 89999997 99999999999999999999875422222222233443  7


Q ss_pred             eEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEE
Q 002736          804 NFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKIL  883 (886)
Q Consensus       804 ~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw  883 (886)
                      +.+.|||++.|+|+||.||.|+||++.+++..........+           ..|+++.|+|.|. .|++++.++.+.+|
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~-----------~aI~s~~W~~sG~-~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN-----------AAITSLSWNPSGS-GLLSADKQKAVTLW  458 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC-----------cceEEEEEcCCCc-hhhcccCCcceEec
Confidence            88999999999999999999999999999887666543322           2599999999999 99999999999999


Q ss_pred             E
Q 002736          884 E  884 (886)
Q Consensus       884 ~  884 (886)
                      .
T Consensus       459 ~  459 (459)
T KOG0288|consen  459 T  459 (459)
T ss_pred             C
Confidence            4

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.96  E-value=4.1e-30  Score=284.25  Aligned_cols=199  Identities=15%  Similarity=0.111  Sum_probs=159.1

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++.+++ ++.   ..+.++++||| .|++|.++|.+. ..+++..+..++.||+.||.|||++||+||||
T Consensus        83 ~~l~~l~hp~Iv~~~~-~~~---~~~~~~lv~Ey~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDL  157 (340)
T PTZ00426         83 KILNYINHPFCVNLYG-SFK---DESYLYLVLEFVIGGEFFTFLRRN-KRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDL  157 (340)
T ss_pred             HHHHhCCCCCCcceEE-EEE---eCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCC
Confidence            3445567999998777 443   34678999999 789999999654 56899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+|++|||+++.....                                                     
T Consensus       158 kp~NILl~~~~~ikL~DFG~a~~~~~~-----------------------------------------------------  184 (340)
T PTZ00426        158 KPENLLLDKDGFIKMTDFGFAKVVDTR-----------------------------------------------------  184 (340)
T ss_pred             CHHHEEECCCCCEEEecCCCCeecCCC-----------------------------------------------------
Confidence            999999999999999999998532110                                                     


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                              ....+||+.|+|||++.+..++.++|||||||++|||++ 
T Consensus       185 ----------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G  224 (340)
T PTZ00426        185 ----------------------------------------TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVG  224 (340)
T ss_pred             ----------------------------------------cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcC
Confidence                                                    011378999999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                        ||...................  +....+.+.+++.+||..||.+|+     +++++++||||...
T Consensus       225 ~~Pf~~~~~~~~~~~i~~~~~~~--p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~  290 (340)
T PTZ00426        225 CPPFYANEPLLIYQKILEGIIYF--PKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNI  290 (340)
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence              776554433333332222221  223457788999999999999995     89999999999864

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.96  E-value=4.5e-30  Score=283.25  Aligned_cols=199  Identities=16%  Similarity=0.164  Sum_probs=159.1

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++.+++ ++.   ..+.+|++||| .|++|.++|.+. ..+++..++.++.||+.||.|||++||+||||
T Consensus        70 ~~l~~l~hp~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dl  144 (329)
T PTZ00263         70 SILMELSHPFIVNMMC-SFQ---DENRVYFLLEFVVGGELFTHLRKA-GRFPNDVAKFYHAELVLAFEYLHSKDIIYRDL  144 (329)
T ss_pred             HHHHhCCCCCCCcEEE-EEE---cCCEEEEEEcCCCCChHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCC
Confidence            3455678999998877 443   34678999998 889999999654 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+||+|||++......                                                     
T Consensus       145 kp~NIll~~~~~~kl~Dfg~~~~~~~~-----------------------------------------------------  171 (329)
T PTZ00263        145 KPENLLLDNKGHVKVTDFGFAKKVPDR-----------------------------------------------------  171 (329)
T ss_pred             CHHHEEECCCCCEEEeeccCceEcCCC-----------------------------------------------------
Confidence            999999999999999999998432110                                                     


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                              .....||+.|+|||++.+..++.++|||||||++|||++ 
T Consensus       172 ----------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg  211 (329)
T PTZ00263        172 ----------------------------------------TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAG  211 (329)
T ss_pred             ----------------------------------------cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcC
Confidence                                                    011368999999999999889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~  328 (886)
                        ||...... ..+..+..... +.+....+.+.+||.+||..||.+||+     +.+++.||||...
T Consensus       212 ~~pf~~~~~~-~~~~~i~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~  277 (329)
T PTZ00263        212 YPPFFDDTPF-RIYEKILAGRL-KFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGA  277 (329)
T ss_pred             CCCCCCCCHH-HHHHHHhcCCc-CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCC
Confidence              77654433 33333333322 122234567889999999999999987     7999999999863

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.96  E-value=4.2e-30  Score=283.23  Aligned_cols=202  Identities=19%  Similarity=0.222  Sum_probs=158.5

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ ++.   ..+.++++||| .|++|.+++... +.+++.+++.++.||+.||.|||++||+||||
T Consensus        47 ~~l~~l~hp~iv~~~~-~~~---~~~~~~lv~Ey~~~g~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDi  121 (328)
T cd05593          47 RVLKNTRHPFLTSLKY-SFQ---TKDRLCFVMEYVNGGELFFHLSRE-RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDL  121 (328)
T ss_pred             HHHHhCCCCCCcceEE-EEE---cCCEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEeccc
Confidence            3455667888887665 332   35678999999 889999998554 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+||+|||+++.......                                                   
T Consensus       122 kp~NIll~~~~~~kL~DfG~~~~~~~~~~---------------------------------------------------  150 (328)
T cd05593         122 KLENLMLDKDGHIKITDFGLCKEGITDAA---------------------------------------------------  150 (328)
T ss_pred             CHHHeEECCCCcEEEecCcCCccCCCccc---------------------------------------------------
Confidence            99999999999999999999853211100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             .....+||+.|+|||.+.+..++.++|||||||+||||++ 
T Consensus       151 ---------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG  191 (328)
T cd05593         151 ---------------------------------------TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  191 (328)
T ss_pred             ---------------------------------------ccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhC
Confidence                                                   0111378999999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                        ||.................  ..+....+++.+|+.+||.+||.+|+     ++.|+++||||...
T Consensus       192 ~~Pf~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  257 (328)
T cd05593         192 RLPFYNQDHEKLFELILMEDI--KFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGV  257 (328)
T ss_pred             CCCCCCCCHHHHHHHhccCCc--cCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence              7755443332222222211  22234567889999999999999997     89999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.96  E-value=6e-30  Score=281.11  Aligned_cols=197  Identities=18%  Similarity=0.256  Sum_probs=156.4

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      .+|++++..++ ++.   ..+.+|++||| .|++|.+++.+. +.+++..++.++.||+.||.|||++||+||||||+||
T Consensus        53 ~~h~~iv~~~~-~~~---~~~~~~iv~Ey~~~g~L~~~i~~~-~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NI  127 (320)
T cd05590          53 RNHPFLTQLYC-CFQ---TPDRLFFVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNV  127 (320)
T ss_pred             cCCCchhceee-EEE---cCCEEEEEEcCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHe
Confidence            36888888776 332   34678999999 789999999654 5789999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |++.++.+||+|||+++.......                                                        
T Consensus       128 li~~~~~~kL~DfG~~~~~~~~~~--------------------------------------------------------  151 (320)
T cd05590         128 LLDHEGHCKLADFGMCKEGIFNGK--------------------------------------------------------  151 (320)
T ss_pred             EECCCCcEEEeeCCCCeecCcCCC--------------------------------------------------------
Confidence            999999999999999853211000                                                        


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                        ......||+.|+|||.+.+..++.++|||||||++|||++   ||.
T Consensus       152 ----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  197 (320)
T cd05590         152 ----------------------------------TTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFE  197 (320)
T ss_pred             ----------------------------------cccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCC
Confidence                                              0112378999999999998889999999999999999999   776


Q ss_pred             CCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH------HHHhcCCCCCCC
Q 002736          271 TGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM------GELLQSEFLNEP  328 (886)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~------~eil~h~~~~~~  328 (886)
                      ..................  +...++.+.+|+.+||+.||.+||++      +++++||||...
T Consensus       198 ~~~~~~~~~~i~~~~~~~--~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~  259 (320)
T cd05590         198 AENEDDLFEAILNDEVVY--PTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKEL  259 (320)
T ss_pred             CCCHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCC
Confidence            554443333332222222  22356778899999999999999998      899999999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.96  E-value=6.2e-30  Score=281.36  Aligned_cols=202  Identities=19%  Similarity=0.241  Sum_probs=159.4

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ ++.   ..+.+|++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++||+||||
T Consensus        47 ~~l~~l~hp~i~~~~~-~~~---~~~~~~lv~E~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dl  121 (323)
T cd05595          47 RVLQNTRHPFLTALKY-AFQ---THDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSRDVVYRDI  121 (323)
T ss_pred             HHHHhCCCCCCcceee-EEe---cCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCC
Confidence            3455567888887766 333   34678999999 889999998554 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+||+|||+++.......                                                   
T Consensus       122 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~---------------------------------------------------  150 (323)
T cd05595         122 KLENLMLDKDGHIKITDFGLCKEGISDGA---------------------------------------------------  150 (323)
T ss_pred             CHHHEEEcCCCCEEecccHHhccccCCCC---------------------------------------------------
Confidence            99999999999999999999853211100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......||+.|+|||.+.+..++.++|||||||+||||++ 
T Consensus       151 ---------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g  191 (323)
T cd05595         151 ---------------------------------------TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  191 (323)
T ss_pred             ---------------------------------------ccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhC
Confidence                                                   0011368999999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                        ||..................  .+...++.+.+||.+||..||.+||     ++.++++|+||...
T Consensus       192 ~~Pf~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~  257 (323)
T cd05595         192 RLPFYNQDHERLFELILMEEIR--FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  257 (323)
T ss_pred             CCCCCCCCHHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCC
Confidence              77655443333322222221  2234567889999999999999998     89999999999874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.4e-30  Score=275.77  Aligned_cols=209  Identities=19%  Similarity=0.240  Sum_probs=161.1

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +.-.|+.-+||+++++++ .+..+   +.+.|+.|| .||-....|-.-++.|++.++..+++|+++||+|||+++||||
T Consensus        79 EIeILa~CdHP~ivkLl~-ayy~e---nkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHR  154 (1187)
T KOG0579|consen   79 EIEILAECDHPVIVKLLS-AYYFE---NKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHR  154 (1187)
T ss_pred             hhhhhhcCCChHHHHHHH-HHhcc---CceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhh
Confidence            344566667999999998 44432   344555555 6677777776667889999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      |||..|||++-+|.|+++|||++......                          .                        
T Consensus       155 DLKAGNiL~TldGdirLADFGVSAKn~~t--------------------------~------------------------  184 (1187)
T KOG0579|consen  155 DLKAGNILLTLDGDIRLADFGVSAKNKST--------------------------R------------------------  184 (1187)
T ss_pred             hccccceEEEecCcEeeecccccccchhH--------------------------H------------------------
Confidence            99999999999999999999997322110                          0                        


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----CCCCCcccccchHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDIYRLGVL  261 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~s~~sDIwSlGvi  261 (886)
                                                       .       +...++|||+|||||++.     ..+|++++||||||++
T Consensus       185 ---------------------------------q-------kRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGIT  224 (1187)
T KOG0579|consen  185 ---------------------------------Q-------KRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGIT  224 (1187)
T ss_pred             ---------------------------------h-------hhccccCCcccccchheeeccccCCCchhhhhHHhhhhH
Confidence                                             0       112249999999999874     5679999999999999


Q ss_pred             HHHHhc--CCCCCchhhHHhHhhccCCCCh--hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          262 LFELFC--PFSTGEEKTRTMSSLRHRVLPP--QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       262 l~eLl~--pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      |.||.-  |....-...+++-.+.....|.  .+...+..+.+|+.+||.+||..||++.++|+|||+...+.
T Consensus       225 LIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~~S  297 (1187)
T KOG0579|consen  225 LIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNAPS  297 (1187)
T ss_pred             HHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhCcccccCCc
Confidence            999998  6655555555554444433322  12223456789999999999999999999999999997543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.8e-28  Score=257.56  Aligned_cols=280  Identities=22%  Similarity=0.288  Sum_probs=232.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEE
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd  646 (886)
                      -.+.|.+++|+|...+=++......+.||+..+.....       ....-+..|.+++|-. +|.++|.|+..|.|+|+|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k-------~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD   96 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK-------TFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFD   96 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh-------hHHhhccceeEEEeec-CCeEEEccCCcCcEEEec
Confidence            35689999999955433333334689999876531111       1122456788999987 799999999999999999


Q ss_pred             CCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeee-ecCCCeEEEEEeCCCCcEE
Q 002736          647 VSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTI-KTKANVCCVQFPLDSGRSL  725 (886)
Q Consensus       647 ~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~l  725 (886)
                      ..+...++.+.+|+.+|..+.|+|.+..+|++|++|+.+++||+.+       ...+..+ .|...|.|.+|+|.+++++
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-------a~v~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-------AYVQAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-------cEEEEEecCCcceeEeeccccCCCeEE
Confidence            8887788999999999999999999999999999999999999998       3333333 3567899999999988999


Q ss_pred             EEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCcee
Q 002736          726 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN  804 (886)
Q Consensus       726 ~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~  804 (886)
                      ++||+||+|++||+|....++..+ .|..+|..|.|. +|..++||+. +.+++||+-++.     +.+..+..|...|+
T Consensus       170 vtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~-----qll~~~~~H~KtVT  242 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG-----QLLTSMFNHNKTVT  242 (487)
T ss_pred             EecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc-----eehhhhhcccceEE
Confidence            999999999999999886445555 699999999996 7789998875 689999999764     44555566999999


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEE
Q 002736          805 FVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKIL  883 (886)
Q Consensus       805 ~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw  883 (886)
                      |+++..++..|++||-|+.|++||+.+-+.+.++++.              ++|.+++.+|++. .++.|-+||.+-+-
T Consensus       243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--------------~pvLsiavs~dd~-t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--------------GPVLSIAVSPDDQ-TVVIGMSNGLVSIR  306 (487)
T ss_pred             EEEeecCCceEeecccccceEEEEccceEEEEeeecc--------------cceeeEEecCCCc-eEEEecccceeeee
Confidence            9999999999999999999999999988888887763              3599999999999 99999999988764

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=3.2e-30  Score=285.84  Aligned_cols=213  Identities=14%  Similarity=0.172  Sum_probs=157.4

Q ss_pred             ceeecccccccCCCCCCcccccc--ccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           29 GVELTHGDHLRNQGGLSGVCENE--AAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ...+...+|++++..++ ++...  .....+|++|||.+++|.+++.+. ..+++..++.++.||+.||.|||++||+||
T Consensus        50 ~~~l~~l~hpniv~~~~-~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~  127 (338)
T cd07859          50 IKLLRLLRHPDIVEIKH-IMLPPSRREFKDIYVVFELMESDLHQVIKAN-DDLTPEHHQFFLYQLLRALKYIHTANVFHR  127 (338)
T ss_pred             HHHHHhCCCCCEeeecc-eEeccCCCCCceEEEEEecCCCCHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHCCeecC
Confidence            34455678999888776 44322  223458999999989999999654 568999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++.++.+||+|||+++........                                                
T Consensus       128 dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~------------------------------------------------  159 (338)
T cd07859         128 DLKPKNILANADCKLKICDFGLARVAFNDTPT------------------------------------------------  159 (338)
T ss_pred             CCCHHHeEECCCCcEEEccCccccccccccCc------------------------------------------------
Confidence            99999999999999999999998543211000                                                


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC--CCCCcccccchHHHHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG--APVSCASDIYRLGVLLFE  264 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~--~~~s~~sDIwSlGvil~e  264 (886)
                                                             .......+||++|+|||++.+  ..++.++|||||||++||
T Consensus       160 ---------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~e  200 (338)
T cd07859         160 ---------------------------------------AIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAE  200 (338)
T ss_pred             ---------------------------------------cccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHH
Confidence                                                   000112378999999999876  568999999999999999


Q ss_pred             Hhc---CCCCCchhhHH--hH------------------------hhccCC---CChhhhccChhhHHHHHHccCCCCCC
Q 002736          265 LFC---PFSTGEEKTRT--MS------------------------SLRHRV---LPPQLLLKFPKEASFCLWLLHPEPSG  312 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~--~~------------------------~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~  312 (886)
                      |++   ||.........  +.                        .+....   +...+....+.+.+++.+||..||.+
T Consensus       201 l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  280 (338)
T cd07859         201 VLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKD  280 (338)
T ss_pred             HHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCccc
Confidence            999   56433221110  00                        000000   01112234567789999999999999


Q ss_pred             CCCHHHHhcCCCCCCCcC
Q 002736          313 RPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       313 Rps~~eil~h~~~~~~~~  330 (886)
                      ||+++|+++||||+....
T Consensus       281 Rpt~~e~l~hp~f~~~~~  298 (338)
T cd07859         281 RPTAEEALADPYFKGLAK  298 (338)
T ss_pred             CCCHHHHhcCchhhhcCc
Confidence            999999999999987544

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=3.4e-27  Score=251.75  Aligned_cols=265  Identities=28%  Similarity=0.418  Sum_probs=225.9

Q ss_pred             cccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEe
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       535 ~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~  614 (886)
                      ..+.+..+|.+++|++.+.+....+     ..|...+.++.|+|+++++++++.++.|++|++...       .......
T Consensus        23 ~l~~~~~~g~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~   90 (289)
T cd00200          23 LLATGSGDGTIKVWDLETGELLRTL-----KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------ECVRTLT   90 (289)
T ss_pred             EEEEeecCcEEEEEEeeCCCcEEEE-----ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------cceEEEe
Confidence            3456667999999999988765554     468889999999999999999999999999999753       1111223


Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhh
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI  694 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~  694 (886)
                      .|...|.++.|++. +.++++++.||.|.+||+.+++....+..|...+.++.|+| ++.++++++.||.|++||+++  
T Consensus        91 ~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~--  166 (289)
T cd00200          91 GHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT--  166 (289)
T ss_pred             ccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc--
Confidence            56778999999984 78888888899999999999999889989999999999998 688888888899999999987  


Q ss_pred             hhhccCceeeeeec-CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEEC
Q 002736          695 LLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAST  772 (886)
Q Consensus       695 ~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~  772 (886)
                           +..+..+.. ...+.+++|+|+ +..+++++.|+.|++||++..+ ++..+..|...+.+++|+ ++.++++++.
T Consensus       167 -----~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  239 (289)
T cd00200         167 -----GKCVATLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDGYLLASGSE  239 (289)
T ss_pred             -----cccceeEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCc-eecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence                 444445444 447999999999 7788888889999999999876 477777899999999997 6778888888


Q ss_pred             CCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEe
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       773 Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd  828 (886)
                      ||.|++||+.+.      .++..+.+|...+.+++|+|++.++++++.|+.|++|+
T Consensus       240 ~~~i~i~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         240 DGTIRVWDLRTG------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEcCCc------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999999876      45777889999999999999999999999999999996

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=3.4e-30  Score=289.76  Aligned_cols=210  Identities=16%  Similarity=0.115  Sum_probs=157.3

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      +...+.+.+|+|++.+++ ++.   .....+++||+.+++|.+++... +.+++.+++.|++||+.||.|||++||||||
T Consensus       133 E~~il~~l~HpnIv~~~~-~~~---~~~~~~lv~e~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrD  207 (391)
T PHA03212        133 EAHILRAINHPSIIQLKG-TFT---YNKFTCLILPRYKTDLYCYLAAK-RNIAICDILAIERSVLRAIQYLHENRIIHRD  207 (391)
T ss_pred             HHHHHHhCCCCCCCCEeE-EEE---ECCeeEEEEecCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            344566778999998776 433   34678899999888999998554 5689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++..+.+||+|||++........                                                  
T Consensus       208 iKP~NIll~~~~~vkL~DFG~a~~~~~~~~--------------------------------------------------  237 (391)
T PHA03212        208 IKAENIFINHPGDVCLGDFGAACFPVDINA--------------------------------------------------  237 (391)
T ss_pred             CChHhEEEcCCCCEEEEeCCcccccccccc--------------------------------------------------
Confidence            999999999999999999999843211000                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......+||+.|+|||++.+..++.++|||||||+||||++
T Consensus       238 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt  278 (391)
T PHA03212        238 ---------------------------------------NKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMAT  278 (391)
T ss_pred             ---------------------------------------cccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHH
Confidence                                                   00112378999999999999889999999999999999998


Q ss_pred             ---CCCCCch------hhHHhHhhc--------------------------cC-C-C------ChhhhccChhhHHHHHH
Q 002736          268 ---PFSTGEE------KTRTMSSLR--------------------------HR-V-L------PPQLLLKFPKEASFCLW  304 (886)
Q Consensus       268 ---pf~~~~~------~~~~~~~~~--------------------------~~-~-~------~~~~~~~~~~~~~li~~  304 (886)
                         ||+....      ....+..+.                          .. . .      .......+.++.+||.+
T Consensus       279 g~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~  358 (391)
T PHA03212        279 CHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICK  358 (391)
T ss_pred             CCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHH
Confidence               5543221      000000000                          00 0 0      00111234467799999


Q ss_pred             ccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          305 LLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       305 ~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                      ||.+||.+|||+.|+|+||||.....+
T Consensus       359 mL~~dP~~Rpta~elL~hp~f~~~~~~  385 (391)
T PHA03212        359 MLAFDAHHRPSAEALLDFAAFQDIPDP  385 (391)
T ss_pred             HhcCChhhCCCHHHHhcChhhccCCCC
Confidence            999999999999999999999876543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=6e-28  Score=235.18  Aligned_cols=300  Identities=17%  Similarity=0.205  Sum_probs=238.3

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      +.+|..+++-|.++.+|++|++|+.|..+.||-...+       ...-...+|.+.|+|+..+- +...+++|+.|.+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-------erlGty~GHtGavW~~Did~-~s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-------ERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAK   77 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCC-------ceeeeecCCCceEEEEEecC-CcceeeeccccceeE
Confidence            4679999999999999999999999999999965321       11224568999999999886 578999999999999


Q ss_pred             EEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCC-----CcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEE
Q 002736          644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDD-----GSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQF  717 (886)
Q Consensus       644 iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~  717 (886)
                      +||+++|+++..++ ...+|..+.|++ ++++++.+.++     +.|.++|++..........+...+.. ...++.+-|
T Consensus        78 LWDv~tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   78 LWDVETGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             EEEcCCCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            99999999999886 578899999997 88888877654     67999999864322222455555554 456999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEe
Q 002736          718 PLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF  796 (886)
Q Consensus       718 sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~  796 (886)
                      .|- +..|++|..||.|..||++++...+.....|...|+.+.++ +..+++|||.|.+-++||+.+..      .++++
T Consensus       156 g~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~------v~Kty  228 (327)
T KOG0643|consen  156 GPL-GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE------VLKTY  228 (327)
T ss_pred             ccc-CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee------eEEEe
Confidence            999 89999999999999999999987778888899999999998 99999999999999999999873      46666


Q ss_pred             ecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCC---CccccCCCcEEEEEEccCCCcEEEE
Q 002736          797 TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSG---PETDDAAQFISSVCWRGQSSNTLVA  873 (886)
Q Consensus       797 ~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~v~~s~~~~~~l~s  873 (886)
                      . ...+|++.+++|...+++.|+.....-|=-.....-...-+|-+.  +..   ....+|=++|++|+|+|+|. ..++
T Consensus       229 ~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~--i~eEEigrvkGHFGPINsvAfhPdGk-sYsS  304 (327)
T KOG0643|consen  229 T-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL--IFEEEIGRVKGHFGPINSVAFHPDGK-SYSS  304 (327)
T ss_pred             e-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH--HHHHHhccccccccCcceeEECCCCc-cccc
Confidence            6 356899999999999888888655443332222111111111110  000   12367889999999999999 9999


Q ss_pred             EeCCCCEEEEE
Q 002736          874 ANSSGNIKILE  884 (886)
Q Consensus       874 ~~~dg~I~iw~  884 (886)
                      |+.||.|++.-
T Consensus       305 GGEDG~VR~h~  315 (327)
T KOG0643|consen  305 GGEDGYVRLHH  315 (327)
T ss_pred             CCCCceEEEEE
Confidence            99999999863

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=9.8e-30  Score=275.25  Aligned_cols=203  Identities=20%  Similarity=0.263  Sum_probs=152.8

Q ss_pred             eecccccccCCCCCCcccccc--ccCCceEEEEeeCCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           31 ELTHGDHLRNQGGLSGVCENE--AAIDPFVHAIEWGDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~e~~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      .+.+.+|+|++..++ ++.+.  .....++++||+.+++|.+++.+. ...+++.+++.++.||+.||.|||++||+|||
T Consensus        55 ~l~~~~h~ni~~~~~-~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~d  133 (288)
T cd07863          55 RLEAFDHPNIVRLMD-VCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRD  133 (288)
T ss_pred             HhhhcCCCCeeeeee-eeccccCCCCceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            344568999888776 44432  234568899999778999998553 24589999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++.+|++|||++.......                                                   
T Consensus       134 ikp~Nili~~~~~~kl~dfg~~~~~~~~~---------------------------------------------------  162 (288)
T cd07863         134 LKPENILVTSGGQVKLADFGLARIYSCQM---------------------------------------------------  162 (288)
T ss_pred             CCHHHEEECCCCCEEECccCccccccCcc---------------------------------------------------
Confidence            99999999999999999999985432110                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......||..|+|||++.+..++.++|||||||++|||++
T Consensus       163 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~  202 (288)
T cd07863         163 ----------------------------------------ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR  202 (288)
T ss_pred             ----------------------------------------cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHh
Confidence                                                    0011267889999999998889999999999999999998


Q ss_pred             --CCCCCchhhHHhHhhcc------------------CCCC--------hhhhccChhhHHHHHHccCCCCCCCCCHHHH
Q 002736          268 --PFSTGEEKTRTMSSLRH------------------RVLP--------PQLLLKFPKEASFCLWLLHPEPSGRPKMGEL  319 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~------------------~~~~--------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ei  319 (886)
                        |++........+..+..                  ..+.        .........+.+|+.+||++||.+|||+.|+
T Consensus       203 g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~  282 (288)
T cd07863         203 RKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRA  282 (288)
T ss_pred             CCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHH
Confidence              44333322222211110                  0000        0112234556799999999999999999999


Q ss_pred             hcCCCC
Q 002736          320 LQSEFL  325 (886)
Q Consensus       320 l~h~~~  325 (886)
                      +.||||
T Consensus       283 l~hp~f  288 (288)
T cd07863         283 LQHPFF  288 (288)
T ss_pred             hcCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.9e-29  Score=247.60  Aligned_cols=288  Identities=16%  Similarity=0.231  Sum_probs=240.5

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccC-cccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN-ENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~-~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      ++.++.+-|..|+|||+++++|++||-|-||++.++.. ......-....|-+...|.|++|+. +..++|+|+.||.|+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIK  288 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEE
Confidence            45677889999999999999999999999999976421 1122222345677899999999998 789999999999999


Q ss_pred             EEECCCceEEEEec-ccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCC
Q 002736          644 VWDVSRSQVLTEMR-EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDS  721 (886)
Q Consensus       644 iWd~~t~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~  721 (886)
                      +|.+++|++++.|. .|.+.|+|+.|+. ++..+++++.|.+++|.-+.+       ++.+..+++ .+.|+.+.|.++ 
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS-------GK~LKEfrGHsSyvn~a~ft~d-  359 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS-------GKCLKEFRGHSSYVNEATFTDD-  359 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEecccc-------chhHHHhcCccccccceEEcCC-
Confidence            99999999999997 7999999999997 899999999999999999999       777777765 456999999999 


Q ss_pred             CcEEEEEeCCCeEEEEecCCCCcceEEEe--cCCCCeEEEEe-c-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEee
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLI--GHNKTVSYVKF-V-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFT  797 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~--~h~~~V~~v~f-~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~  797 (886)
                      |+.++++|.||+|++|+..+..+ +.+|+  +...+|++|-. + +...++.+...++|.+.++..       +.+++|.
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-------QvVrsfs  431 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-------QVVRSFS  431 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-------eEEeeec
Confidence            99999999999999999998874 77765  34566777766 4 778999999999999998864       3466665


Q ss_pred             cCC---CceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEE
Q 002736          798 GHT---NVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAA  874 (886)
Q Consensus       798 ~h~---~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~  874 (886)
                      ...   +.-.+.++||.|.++.|.++|+.++.|.+.+++.-..+..             |..-|..++.+|..+ .||+=
T Consensus       432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-------------hEkdvIGl~HHPHqN-llAsY  497 (508)
T KOG0275|consen  432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-------------HEKDVIGLTHHPHQN-LLASY  497 (508)
T ss_pred             cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-------------ccccccccccCcccc-hhhhh
Confidence            432   2344567999999999999999999999998876554432             334488999999999 99999


Q ss_pred             eCCCCEEEEE
Q 002736          875 NSSGNIKILE  884 (886)
Q Consensus       875 ~~dg~I~iw~  884 (886)
                      +.||.+++|.
T Consensus       498 sEDgllKLWk  507 (508)
T KOG0275|consen  498 SEDGLLKLWK  507 (508)
T ss_pred             cccchhhhcC
Confidence            9999999995

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.96  E-value=1e-29  Score=274.70  Aligned_cols=206  Identities=14%  Similarity=0.144  Sum_probs=157.1

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ...+.+.+|++++..+. ++.   ..+.++++||| .|++|.+++... ...+++..++.++.||+.||.|||++||+||
T Consensus        51 ~~il~~l~~~~iv~~~~-~~~---~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~  126 (285)
T cd05631          51 KRILEKVNSRFVVSLAY-AYE---TKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYR  126 (285)
T ss_pred             HHHHHhcCCCcEEEEEE-EEc---cCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeC
Confidence            34555667888877665 333   34578899998 789999887432 3468999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++.++.+|++|||++.......                                                  
T Consensus       127 dikp~Nill~~~~~~kl~Dfg~~~~~~~~~--------------------------------------------------  156 (285)
T cd05631         127 DLKPENILLDDRGHIRISDLGLAVQIPEGE--------------------------------------------------  156 (285)
T ss_pred             CCCHHHEEECCCCCEEEeeCCCcEEcCCCC--------------------------------------------------
Confidence            999999999999999999999984321100                                                  


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               .....+||+.|+|||.+.+..++.++|||||||+||||+
T Consensus       157 -----------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~  195 (285)
T cd05631         157 -----------------------------------------TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMI  195 (285)
T ss_pred             -----------------------------------------eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHH
Confidence                                                     001126899999999999988999999999999999999


Q ss_pred             c---CCCCCchhhH--HhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCCc
Q 002736          267 C---PFSTGEEKTR--TMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEPR  329 (886)
Q Consensus       267 ~---pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~~  329 (886)
                      +   ||........  .................++.+.+|+.+||..||.+||+     ++++++||||....
T Consensus       196 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~  268 (285)
T cd05631         196 QGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNIN  268 (285)
T ss_pred             hCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCC
Confidence            9   7765433211  11111111112223345678889999999999999987     89999999998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.96  E-value=1.3e-29  Score=274.22  Aligned_cols=203  Identities=18%  Similarity=0.200  Sum_probs=150.8

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++.+++ ++.   ..+.++++|||..+++.+.+......+++..++.++.||+.||.|||++||+|||||
T Consensus        52 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk  127 (287)
T cd07848          52 KMLRTLKQENIVELKE-AFR---RRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIK  127 (287)
T ss_pred             HHHHhCCCccccchhh-hEe---cCCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            3455668888888776 443   346789999995555555554444578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+||+|||++.........                                                   
T Consensus       128 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~---------------------------------------------------  156 (287)
T cd07848         128 PENLLISHNDVLKLCDFGFARNLSEGSNA---------------------------------------------------  156 (287)
T ss_pred             HHHEEEcCCCcEEEeeccCcccccccccc---------------------------------------------------
Confidence            99999999999999999998543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......|++.|+|||.+.+..++.++|||||||++|||++  
T Consensus       157 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~  198 (287)
T cd07848         157 --------------------------------------NYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQ  198 (287)
T ss_pred             --------------------------------------cccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCC
Confidence                                                  0011368999999999998889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhc--cC------------------CCCh----------hhhccChhhHHHHHHccCCCCCCCCCH
Q 002736          268 -PFSTGEEKTRTMSSLR--HR------------------VLPP----------QLLLKFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~--~~------------------~~~~----------~~~~~~~~~~~li~~~L~~dP~~Rps~  316 (886)
                       ||..............  ..                  ..+.          .....++.+.+|+.+||++||++|||+
T Consensus       199 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~  278 (287)
T cd07848         199 PLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLT  278 (287)
T ss_pred             CCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCH
Confidence             6654332221111000  00                  0000          001134567899999999999999999


Q ss_pred             HHHhcCCCC
Q 002736          317 GELLQSEFL  325 (886)
Q Consensus       317 ~eil~h~~~  325 (886)
                      +|+|+||||
T Consensus       279 ~~~l~hp~f  287 (287)
T cd07848         279 EQCLNHPAF  287 (287)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.96  E-value=1.4e-29  Score=278.37  Aligned_cols=196  Identities=18%  Similarity=0.253  Sum_probs=156.1

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++.+++ ++.   ..+.+|++||| .|++|..++.+. +.+++..++.++.||+.||.|||++||+||||||+|||
T Consensus        54 ~hp~i~~~~~-~~~---~~~~~~lv~E~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nil  128 (321)
T cd05591          54 KHPFLTALHC-CFQ---TKDRLFFVMEYVNGGDLMFQIQRS-RKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNIL  128 (321)
T ss_pred             CCCCccceee-EEE---cCCeEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeE
Confidence            6788877666 333   34678999999 789999998654 57899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+||+|||++........                                                         
T Consensus       129 l~~~~~~kL~Dfg~~~~~~~~~~---------------------------------------------------------  151 (321)
T cd05591         129 LDAEGHCKLADFGMCKEGILNGV---------------------------------------------------------  151 (321)
T ss_pred             ECCCCCEEEeecccceecccCCc---------------------------------------------------------
Confidence            99999999999999853211100                                                         


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFST  271 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~  271 (886)
                                                       ......||+.|+|||++.+..++.++|||||||++|||++   ||..
T Consensus       152 ---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~  198 (321)
T cd05591         152 ---------------------------------TTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEA  198 (321)
T ss_pred             ---------------------------------cccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCC
Confidence                                             0111368999999999998889999999999999999999   7765


Q ss_pred             CchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-------CHHHHhcCCCCCCC
Q 002736          272 GEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-------KMGELLQSEFLNEP  328 (886)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-------s~~eil~h~~~~~~  328 (886)
                      .................+  ...++++.+++.+||..||.+||       ++.++++||||...
T Consensus       199 ~~~~~~~~~i~~~~~~~p--~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~  260 (321)
T cd05591         199 DNEDDLFESILHDDVLYP--VWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEI  260 (321)
T ss_pred             CCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCCC
Confidence            554444333333332222  23457788999999999999999       89999999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=7.6e-30  Score=275.96  Aligned_cols=204  Identities=19%  Similarity=0.217  Sum_probs=169.1

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|.+|.  .++-...|+++|.+++ +|..+   +++||+||| ..|+|.+||+. .++.++..+-+.++.||++|++||+
T Consensus       247 ~f~~Ea--~iMk~L~H~~lV~l~g-V~~~~---~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLe  320 (468)
T KOG0197|consen  247 AFLREA--QIMKKLRHEKLVKLYG-VCTKQ---EPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLE  320 (468)
T ss_pred             HHHHHH--HHHHhCcccCeEEEEE-EEecC---CceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHH
Confidence            444443  3344557888988888 88753   389999999 88999999976 5678899999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++++|||||...|||++.++.+||+|||+++..+.+.....                                       
T Consensus       321 s~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~---------------------------------------  361 (468)
T KOG0197|consen  321 SKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTAS---------------------------------------  361 (468)
T ss_pred             hCCccchhhhhhheeeccCceEEEcccccccccCCCceeec---------------------------------------
Confidence            99999999999999999999999999999985443322100                                       


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                   .+                            ..+         .--|+|||.+....++.+|||||||
T Consensus       362 -------------~~----------------------------~kf---------PIkWtAPEa~~~~~FS~kSDVWSFG  391 (468)
T KOG0197|consen  362 -------------EG----------------------------GKF---------PIKWTAPEALNYGKFSSKSDVWSFG  391 (468)
T ss_pred             -------------CC----------------------------CCC---------CceecCHHHHhhCCcccccceeehh
Confidence                         00                            111         1238899999999999999999999


Q ss_pred             HHHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHh
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELL  320 (886)
Q Consensus       260 vil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil  320 (886)
                      |+||||+|   .++.......+...+..+..-|.+..+++.+.+++..||+.+|++|||++.+.
T Consensus       392 VlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~  455 (468)
T KOG0197|consen  392 VLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLR  455 (468)
T ss_pred             hhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHH
Confidence            99999999   44477778888889998888888889999999999999999999999998553

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=1.6e-29  Score=277.30  Aligned_cols=197  Identities=18%  Similarity=0.269  Sum_probs=155.0

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      .+|++++..++ ++.   ..+.+|++||| .|++|.+++.+. ..+++.++..++.||+.||+|||++||+||||||+||
T Consensus        53 ~~~~~i~~~~~-~~~---~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Ni  127 (316)
T cd05620          53 WENPFLTHLYC-TFQ---TKEHLFFVMEFLNGGDLMFHIQDK-GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNV  127 (316)
T ss_pred             cCCCCccCeeE-EEE---eCCEEEEEECCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHe
Confidence            46788887766 332   35688999999 788999998654 5689999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |++.++.+|++|||+++......                                                         
T Consensus       128 l~~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------------------  150 (316)
T cd05620         128 MLDRDGHIKIADFGMCKENVFGD---------------------------------------------------------  150 (316)
T ss_pred             EECCCCCEEeCccCCCeecccCC---------------------------------------------------------
Confidence            99999999999999984221000                                                         


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                       ......+||+.|+|||++.+..++.++|||||||++|||++   ||.
T Consensus       151 ---------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~  197 (316)
T cd05620         151 ---------------------------------NRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             ---------------------------------CceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence                                             00112378999999999999889999999999999999999   776


Q ss_pred             CCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH-HHHhcCCCCCCC
Q 002736          271 TGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM-GELLQSEFLNEP  328 (886)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~-~eil~h~~~~~~  328 (886)
                      ..... .....+... .+.......+++.+|+.+||+.||.+||++ +++++||||...
T Consensus       198 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         198 GDDED-ELFESIRVD-TPHYPRWITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             CCCHH-HHHHHHHhC-CCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence            54433 233333222 122222356788899999999999999998 588899999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=3.6e-28  Score=253.93  Aligned_cols=261  Identities=23%  Similarity=0.320  Sum_probs=217.9

Q ss_pred             cCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCcccCcccc--cccc-eEEecCCCCeeeEEEeCCCCCeEEEecCCC
Q 002736          565 LNSSNLVCSLSFDRD-GELFAAAGVNKKIKVFECDAIINENRD--IHYP-VVEMASRSKLSSICWNSYIKSQIASSNFEG  640 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d-~~~lat~~~d~~Ikiwd~~~~~~~~~~--~~~~-~~~~~~~~~I~~l~~~~~~~~~las~s~Dg  640 (886)
                      +.|.+.|+.+...|. ...+||++..+.|.|||..........  ...| ....+|...-.+|+|++.....|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            569999999999994 567888899999999999874332221  2222 345567776888999999999999999999


Q ss_pred             cEEEEECCCce-------EEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeee-eecCCCe
Q 002736          641 VVQVWDVSRSQ-------VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGT-IKTKANV  712 (886)
Q Consensus       641 ~V~iWd~~t~~-------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v  712 (886)
                      +|.+||+....       +...+.+|...|..++|++.+..+|+++++|+.+.|||+|+..     ..+... -.|.+.|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-----~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-----SKPSHSVKAHSAEV  275 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-----CCCcccccccCCce
Confidence            99999996532       3566789999999999999889999999999999999999621     222223 3357889


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEEEEECCCcEEEEeCCCCCcc---
Q 002736          713 CCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLSMCTSR---  787 (886)
Q Consensus       713 ~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~sgs~Dg~i~lwd~~~~~~~---  787 (886)
                      .|++|+|.++.+||+||.|++|.+||+|+...++.++.+|+..|..|.|+  ....|+|++.|+.+.+||+..-...   
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            99999999999999999999999999999999999999999999999997  7789999999999999999753221   


Q ss_pred             -----ccCCCceEeecCCCceeEEEEecCCC-EEEEEcCCCcEEEEecC
Q 002736          788 -----VIDTPLHSFTGHTNVKNFVGLSVWDG-YVATGSETNEVFVYHKA  830 (886)
Q Consensus       788 -----~~~~~~~~~~~h~~~v~~v~~sp~g~-~lasgs~Dg~v~iwd~~  830 (886)
                           ....++.+..||+..|+.+.|+|+.. .|++.++|+.+.||...
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 12245688899999999999999987 67888999999999876

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.3e-29  Score=282.40  Aligned_cols=231  Identities=16%  Similarity=0.211  Sum_probs=163.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ ++.   ..+.++++||| .|++|.+++.+. ..+++.+++.++.||+.||+|||++||+|||||
T Consensus        54 ~l~~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlk  128 (350)
T cd05573          54 ILADADSPWIVKLYY-SFQ---DEEHLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHKLGFIHRDIK  128 (350)
T ss_pred             HHHhcCCCCccchhh-hee---cCCeEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence            344556888888776 443   34678999999 789999999665 678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+||+|||++...............                         ......           ...
T Consensus       129 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~-------------------------~~~~~~-----------~~~  172 (350)
T cd05573         129 PDNILIDADGHIKLADFGLCKKMNKAKDREYYLND-------------------------SHNLLF-----------RDN  172 (350)
T ss_pred             HHHeEECCCCCEEeecCCCCccCcccCcccccccc-------------------------cccccc-----------ccc
Confidence            99999999999999999999765433211000000                         000000           000


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                      .                         ..................||+.|+|||.+.+..++.++|||||||+||||++  
T Consensus       173 ~-------------------------~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~  227 (350)
T cd05573         173 V-------------------------LVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGF  227 (350)
T ss_pred             c-------------------------cccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCC
Confidence            0                         0000000000011223479999999999999999999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhc--cCCCChhhhccChhhHHHHHHccCCCCCCCCC-HHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLR--HRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-MGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-~~eil~h~~~~~~  328 (886)
                       ||..............  .....+.....++.+.+||.+||. ||.+||+ +.++++||||...
T Consensus       228 ~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~  291 (350)
T cd05573         228 PPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGI  291 (350)
T ss_pred             CCCCCCCHHHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCC
Confidence             7766554433333322  222222233357888999999997 9999999 9999999999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.96  E-value=5e-30  Score=282.52  Aligned_cols=202  Identities=19%  Similarity=0.246  Sum_probs=157.8

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrD  107 (886)
                      ..+...+|++++.+.+ ++.   ..+.+|++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||+ +||+|||
T Consensus        47 ~~l~~~~hp~i~~~~~-~~~---~~~~~~lv~E~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrD  121 (325)
T cd05594          47 RVLQNSRHPFLTALKY-SFQ---THDRLCFVMEYANGGELFFHLSRE-RVFSEDRARFYGAEIVSALDYLHSEKNVVYRD  121 (325)
T ss_pred             HHHHhCCCCCCCceEE-EEE---cCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecC
Confidence            3455567888887665 332   34678999999 789999988554 578999999999999999999998 7999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++.+||+|||+++.......                                                  
T Consensus       122 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~--------------------------------------------------  151 (325)
T cd05594         122 LKLENLMLDKDGHIKITDFGLCKEGIKDGA--------------------------------------------------  151 (325)
T ss_pred             CCCCeEEECCCCCEEEecCCCCeecCCCCc--------------------------------------------------
Confidence            999999999999999999999853211100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              .....+||+.|+|||++.+..++.++|||||||+||||++
T Consensus       152 ----------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~t  191 (325)
T cd05594         152 ----------------------------------------TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  191 (325)
T ss_pred             ----------------------------------------ccccccCCcccCCHHHHccCCCCCccccccccceeeeecc
Confidence                                                    0111368999999999998889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                         ||.................  ..+....+++.+|+.+||..||.+|+     ++.++++||||...
T Consensus       192 G~~Pf~~~~~~~~~~~i~~~~~--~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  258 (325)
T cd05594         192 GRLPFYNQDHEKLFELILMEEI--RFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGI  258 (325)
T ss_pred             CCCCCCCCCHHHHHHHHhcCCC--CCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCC
Confidence               7765544332222222221  12234567889999999999999996     89999999999874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-30  Score=295.67  Aligned_cols=212  Identities=17%  Similarity=0.219  Sum_probs=170.4

Q ss_pred             CCcccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHh
Q 002736           19 NDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYA   97 (886)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~   97 (886)
                      ..+.||+|+|.++.+......++.+-      ......+|+|||| .||+|..+|.+.. ++|+..+++|+..|+.||+-
T Consensus       118 ~tA~F~EERDimv~~ns~Wiv~LhyA------FQD~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAlds  190 (1317)
T KOG0612|consen  118 ETACFREERDIMVFGNSEWIVQLHYA------FQDERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDS  190 (1317)
T ss_pred             hHHHHHHHhHHHHcCCcHHHHHHHHH------hcCccceEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHH
Confidence            34679999999887765555554422      2346788999999 9999999997765 89999999999999999999


Q ss_pred             hcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCC
Q 002736           98 AHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus        98 lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  177 (886)
                      +|+.|+|||||||+||||+.+||+|++|||.|-....+..                                        
T Consensus       191 lH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~----------------------------------------  230 (1317)
T KOG0612|consen  191 LHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGT----------------------------------------  230 (1317)
T ss_pred             HHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCc----------------------------------------
Confidence            9999999999999999999999999999999954432210                                        


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC----C-CCCCcc
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA----G-APVSCA  252 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~----~-~~~s~~  252 (886)
                                                                       ......+|||-|.|||++.    + +.|+..
T Consensus       231 -------------------------------------------------V~s~~aVGTPDYISPEvLqs~~~~~g~yG~e  261 (1317)
T KOG0612|consen  231 -------------------------------------------------VRSSVAVGTPDYISPEVLQSQGDGKGEYGRE  261 (1317)
T ss_pred             -------------------------------------------------EEeccccCCCCccCHHHHHhhcCCccccCCc
Confidence                                                             0122349999999999985    2 459999


Q ss_pred             cccchHHHHHHHHhc---CCCCCchhhHHhHhhccC--CCChhhhccChhhHHHHHHccCCCCCCCCC---HHHHhcCCC
Q 002736          253 SDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEASFCLWLLHPEPSGRPK---MGELLQSEF  324 (886)
Q Consensus       253 sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rps---~~eil~h~~  324 (886)
                      +|+|||||++||||+   ||+...-...+-.++.+.  .-.|.....++.+.+||.+++. +|..|..   ++++..|||
T Consensus       262 cDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~HpF  340 (1317)
T KOG0612|consen  262 CDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNHPF  340 (1317)
T ss_pred             cchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhCcc
Confidence            999999999999998   998877666555555552  2233445588899999998775 5778877   999999999


Q ss_pred             CCC
Q 002736          325 LNE  327 (886)
Q Consensus       325 ~~~  327 (886)
                      |.+
T Consensus       341 F~g  343 (1317)
T KOG0612|consen  341 FEG  343 (1317)
T ss_pred             ccC
Confidence            864

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.9e-29  Score=281.27  Aligned_cols=203  Identities=18%  Similarity=0.183  Sum_probs=153.4

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++.+++ ++.   ..+..+++||+..++|.+++.+....+++.+++.|+.||+.||.|||++||||||||
T Consensus       109 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  184 (357)
T PHA03209        109 MLLQNVNHPSVIRMKD-TLV---SGAITCMVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVK  184 (357)
T ss_pred             HHHHhCCCCCCcChhh-eEE---eCCeeEEEEEccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            3456678999988877 443   345688999998889999997666789999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++..+.+||+|||+++......                                                     
T Consensus       185 p~Nill~~~~~~kl~DfG~a~~~~~~~-----------------------------------------------------  211 (357)
T PHA03209        185 TENIFINDVDQVCIGDLGAAQFPVVAP-----------------------------------------------------  211 (357)
T ss_pred             HHHEEECCCCCEEEecCccccccccCc-----------------------------------------------------
Confidence            999999999999999999984321100                                                     


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......||+.|+|||++.+..++.++|||||||++|||++  
T Consensus       212 --------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~  253 (357)
T PHA03209        212 --------------------------------------AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYP  253 (357)
T ss_pred             --------------------------------------ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcC
Confidence                                                  0011368999999999999889999999999999999997  


Q ss_pred             -CCCCCchhh---------HHhHh-hcc-CCCChh-------------------------------hhccChhhHHHHHH
Q 002736          268 -PFSTGEEKT---------RTMSS-LRH-RVLPPQ-------------------------------LLLKFPKEASFCLW  304 (886)
Q Consensus       268 -pf~~~~~~~---------~~~~~-~~~-~~~~~~-------------------------------~~~~~~~~~~li~~  304 (886)
                       +++......         ..+.. +.. ...+..                               .......+.+||.+
T Consensus       254 ~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  333 (357)
T PHA03209        254 STIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHK  333 (357)
T ss_pred             CccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHH
Confidence             332221100         00000 000 000000                               01233455679999


Q ss_pred             ccCCCCCCCCCHHHHhcCCCCCC
Q 002736          305 LLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       305 ~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      ||..||.+|||+.|+|+||||+.
T Consensus       334 mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        334 MLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             HHcCCcccCcCHHHHhcCchhcc
Confidence            99999999999999999999975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.3e-27  Score=230.73  Aligned_cols=273  Identities=15%  Similarity=0.191  Sum_probs=220.8

Q ss_pred             ccccccccceEEeeecC---ceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          536 WINPFLEGLCKYLSFSK---LRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~---~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      +.++..|..+++|+...   ..++..|.    -+|+..|++++|+|.|++||+|+.|.++.||.-...     +......
T Consensus        30 lAscg~Dk~vriw~~~~~~s~~ck~vld----~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-----efecv~~  100 (312)
T KOG0645|consen   30 LASCGTDKAVRIWSTSSGDSWTCKTVLD----DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-----EFECVAT  100 (312)
T ss_pred             EEeecCCceEEEEecCCCCcEEEEEecc----ccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-----ceeEEee
Confidence            56778899999999884   45555553    369999999999999999999999999999976532     2223344


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCc---eEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEe
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRS---QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS  689 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~---~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd  689 (886)
                      ..+|...|.|++|++ ++++||+++.|..|-||.+..+   ++...+++|...|..+.|+| ...+|+++|.|.+|++|+
T Consensus       101 lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~  178 (312)
T KOG0645|consen  101 LEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYR  178 (312)
T ss_pred             eeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEe
Confidence            557999999999998 7999999999999999998744   57788999999999999999 788999999999999998


Q ss_pred             CchhhhhhccCceeeeeecC-CCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEE
Q 002736          690 INQAILLLHLGVSIGTIKTK-ANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV  768 (886)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~  768 (886)
                      -.....    -.+++++..+ ..|.+++|+|. |..|++++.|++|+||-+...-     -..|..+++.+.|. ...|+
T Consensus       179 ~~~ddd----W~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~-----~~~~sr~~Y~v~W~-~~~Ia  247 (312)
T KOG0645|consen  179 DEDDDD----WECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDL-----SGMHSRALYDVPWD-NGVIA  247 (312)
T ss_pred             ecCCCC----eeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeeccCc-----chhcccceEeeeec-ccceE
Confidence            763111    4566677654 47999999999 8999999999999999876321     12478899999997 67999


Q ss_pred             EEECCCcEEEEeCCCCCc-cccCCCceEeecCCCceeEEEEecC-CCEEEEEcCCCcEEEEecC
Q 002736          769 SASTDNTLKLWDLSMCTS-RVIDTPLHSFTGHTNVKNFVGLSVW-DGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       769 sgs~Dg~i~lwd~~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~-g~~lasgs~Dg~v~iwd~~  830 (886)
                      ||+.|+.|+||--..... .........-..|...|++|.|.|. ..+|++||.||.|++|.+.
T Consensus       248 S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  248 SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            999999999997764311 0011112234578899999999995 6799999999999999764

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=2.2e-29  Score=276.03  Aligned_cols=197  Identities=17%  Similarity=0.238  Sum_probs=155.4

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      .+|++++.+++ ++.   ..+.++++||| .|++|.+++... ..+++.+++.|+.||+.||.|||++||+||||||+||
T Consensus        53 ~~hp~i~~~~~-~~~---~~~~~~lv~e~~~gg~L~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Ni  127 (316)
T cd05592          53 WEHPFLTHLFC-TFQ---TKEHLFFVMEYLNGGDLMFHIQSS-GRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNV  127 (316)
T ss_pred             cCCCCccceee-EEE---cCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHe
Confidence            47888888776 332   34678999999 789999999654 5789999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |++.++.+||+|||+++.......                                                        
T Consensus       128 ll~~~~~~kL~Dfg~a~~~~~~~~--------------------------------------------------------  151 (316)
T cd05592         128 LLDKDGHIKIADFGMCKENMNGEG--------------------------------------------------------  151 (316)
T ss_pred             EECCCCCEEEccCcCCeECCCCCC--------------------------------------------------------
Confidence            999999999999999853211100                                                        


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                        .....+||+.|+|||.+.+..++.++|||||||++|||++   ||.
T Consensus       152 ----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~  197 (316)
T cd05592         152 ----------------------------------KASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             ----------------------------------ccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCC
Confidence                                              0112378999999999999889999999999999999999   776


Q ss_pred             CCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH-HHHhcCCCCCCC
Q 002736          271 TGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM-GELLQSEFLNEP  328 (886)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~-~eil~h~~~~~~  328 (886)
                      ......... .+... .+..+....+++.+|+.+||..+|.+||++ .++++||||...
T Consensus       198 ~~~~~~~~~-~i~~~-~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05592         198 GEDEDELFD-SILND-RPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGI  254 (316)
T ss_pred             CCCHHHHHH-HHHcC-CCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCcccCCC
Confidence            554433332 22221 222233455778899999999999999986 578899999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=2.1e-29  Score=278.50  Aligned_cols=198  Identities=19%  Similarity=0.228  Sum_probs=151.5

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++.+++ ++.   ..+.++++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||++||+||||||+|||
T Consensus        63 ~~~~i~~~~~-~~~---~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil  137 (332)
T cd05614          63 QSPFLVTLHY-AFQ---TEAKLHLILDYVSGGEMFTHLYQR-DNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENIL  137 (332)
T ss_pred             CCCCcccEEE-EEe---cCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeE
Confidence            4667766555 332   34678899999 789999999654 56899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+||+|||+++........                                                        
T Consensus       138 i~~~~~~kl~DfG~~~~~~~~~~~--------------------------------------------------------  161 (332)
T cd05614         138 LDSEGHVVLTDFGLSKEFLSEEKE--------------------------------------------------------  161 (332)
T ss_pred             ECCCCCEEEeeCcCCccccccCCC--------------------------------------------------------
Confidence            999999999999998543211000                                                        


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc---CCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                       .....+||+.|+|||.+.+.. ++.++|||||||+||||++   ||.
T Consensus       162 ---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~  208 (332)
T cd05614         162 ---------------------------------RTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFT  208 (332)
T ss_pred             ---------------------------------ccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCC
Confidence                                             011237899999999998754 8899999999999999999   774


Q ss_pred             CCch---hhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          271 TGEE---KTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       271 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                      ....   .......+. ...++......+.+.+|+.+||..||.+||     +++++++||||...
T Consensus       209 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  273 (332)
T cd05614         209 LEGERNTQSEVSRRIL-KCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGL  273 (332)
T ss_pred             CCCCCCCHHHHHHHHh-cCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            3221   111112221 122233334567888999999999999999     78899999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.96  E-value=2.5e-29  Score=281.21  Aligned_cols=237  Identities=16%  Similarity=0.196  Sum_probs=158.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+.+.+|++++..+. .+.   ..+.+|++||| .|++|.+++.+. ..+++.+++.++.||+.||+|||++||+|||||
T Consensus        54 il~~~~~~~iv~~~~-~~~---~~~~~~lv~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlK  128 (363)
T cd05628          54 ILVEADSLWVVKMFY-SFQ---DKLNLYLIMEFLPGGDMMTLLMKK-DTLTEEETQFYIAETVLAIDSIHQLGFIHRDIK  128 (363)
T ss_pred             HHHhCCCCCcceEEE-EEe---cCCeEEEEEcCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCC
Confidence            345567888888776 333   34678999999 789999999654 578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++++||+|||+++........... .     .. ...            ...++.........         
T Consensus       129 p~NILi~~~~~vkL~DFGla~~~~~~~~~~~~-~-----~~-~~~------------~~~~~~~~~~~~~~---------  180 (363)
T cd05628         129 PDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFY-R-----NL-NHS------------LPSDFTFQNMNSKR---------  180 (363)
T ss_pred             HHHeEECCCCCEEEeeccCccccccccccccc-c-----cc-ccc------------cccccccccccccc---------
Confidence            99999999999999999999754322100000 0     00 000            00000000000000         


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                        ..+        .. ...........+||+.|+|||++.+..++.++|||||||+||||++  
T Consensus       181 ------------------~~~--------~~-~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~  233 (363)
T cd05628         181 ------------------KAE--------TW-KRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY  233 (363)
T ss_pred             ------------------ccc--------hh-hhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCC
Confidence                              000        00 0000001123489999999999999889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhc--cCCCChhhhccChhhHHHHHHccCCCCC---CCCCHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLR--HRVLPPQLLLKFPKEASFCLWLLHPEPS---GRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~---~Rps~~eil~h~~~~~~  328 (886)
                       ||..............  .....+.....++++.+||.+|+. +|.   .||+++|+++||||...
T Consensus       234 ~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~  299 (363)
T cd05628         234 PPFCSETPQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGV  299 (363)
T ss_pred             CCCCCCCHHHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCC
Confidence             7765544333322222  111122223456788899998765 444   45899999999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.1e-29  Score=278.58  Aligned_cols=199  Identities=17%  Similarity=0.243  Sum_probs=157.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ ++.   ..+.+|++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||++||+|||||
T Consensus        54 ~l~~~~h~~iv~~~~-~~~---~~~~~~lv~e~~~g~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk  128 (333)
T cd05600          54 ILTTTKSEWLVKLLY-AFQ---DDEYLYLAMEYVPGGDFRTLLNNL-GVLSEDHARFYMAEMFEAVDALHELGYIHRDLK  128 (333)
T ss_pred             HHHhCCCCCCccEEE-EEE---cCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            344556888888776 443   35678999999 799999999554 578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+||+|||++......                                                      
T Consensus       129 p~Nil~~~~~~~kL~Dfg~a~~~~~~------------------------------------------------------  154 (333)
T cd05600         129 PENFLIDASGHIKLTDFGLSKGIVTY------------------------------------------------------  154 (333)
T ss_pred             HHHEEECCCCCEEEEeCcCCcccccc------------------------------------------------------
Confidence            99999999999999999998533110                                                      


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                             ....+||+.|+|||.+.+..++.++|||||||++|||++  
T Consensus       155 ---------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~  195 (333)
T cd05600         155 ---------------------------------------ANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGF  195 (333)
T ss_pred             ---------------------------------------cCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCC
Confidence                                                   011278999999999999899999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhcc---CCCChhh----hccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRH---RVLPPQL----LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                       ||........ +..+..   ....+..    ...++++.+|+.+||..+|.+||++.++++||||...
T Consensus       196 ~pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~  263 (333)
T cd05600         196 PPFSGSTPNET-WENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEV  263 (333)
T ss_pred             CCCCCCCHHHH-HHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCC
Confidence             7754433322 222221   1111111    2346788899999999999999999999999999864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=2.2e-29  Score=276.61  Aligned_cols=208  Identities=16%  Similarity=0.158  Sum_probs=149.1

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCC--------CCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKP--------KRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~--------~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      ...+.+.+|+|++.++. ++... ....++++|||.+++|.+++...        ...+++..++.|++||+.||+|||+
T Consensus        49 ~~~l~~l~h~niv~~~~-~~~~~-~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~  126 (317)
T cd07868          49 IALLRELKHPNVISLQK-VFLSH-ADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA  126 (317)
T ss_pred             HHHHHhcCCCCCcceee-eEecC-CCcEEEEEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh
Confidence            34456678999988776 44322 34568899999888999987421        2358999999999999999999999


Q ss_pred             cCeeecccCCcceee----ccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccC
Q 002736          101 QGIVVHNVRPSCFVM----SSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTA  176 (886)
Q Consensus       101 ~giiHrDlkP~NIll----~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  176 (886)
                      +||+||||||+|||+    +..+.+||+|||+++........                                      
T Consensus       127 ~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~--------------------------------------  168 (317)
T cd07868         127 NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKP--------------------------------------  168 (317)
T ss_pred             CCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCcc--------------------------------------
Confidence            999999999999999    45678999999998644221000                                      


Q ss_pred             CCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCccccc
Q 002736          177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDI  255 (886)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDI  255 (886)
                                                                       .......+||++|+|||++.+. .++.++||
T Consensus       169 -------------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di  199 (317)
T cd07868         169 -------------------------------------------------LADLDPVVVTFWYRAPELLLGARHYTKAIDI  199 (317)
T ss_pred             -------------------------------------------------ccccCCccccccccCCHHHcCCCCcCchhhH
Confidence                                                             0001123789999999999874 48999999


Q ss_pred             chHHHHHHHHhc---CCCCCchhh--------HHhHhhcc----------------------------CCCC--------
Q 002736          256 YRLGVLLFELFC---PFSTGEEKT--------RTMSSLRH----------------------------RVLP--------  288 (886)
Q Consensus       256 wSlGvil~eLl~---pf~~~~~~~--------~~~~~~~~----------------------------~~~~--------  288 (886)
                      |||||++|||++   ||.......        ..+..+..                            ....        
T Consensus       200 wslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (317)
T cd07868         200 WAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYM  279 (317)
T ss_pred             HHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccccCcccccchH
Confidence            999999999999   664322110        00000000                            0000        


Q ss_pred             -hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          289 -PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       289 -~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                       .......+.+.+||.+||.+||.+|||++|+|+||||
T Consensus       280 ~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         280 EKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             HhcCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence             0000112356799999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=2.4e-29  Score=277.40  Aligned_cols=197  Identities=17%  Similarity=0.237  Sum_probs=152.9

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++..++ ++.   ..+.+|++||| .|++|.+++.+. +.+++..++.|+.||+.||.|||++||+||||||+|||
T Consensus        54 ~hp~Iv~~~~-~~~---~~~~~~lv~e~~~~g~L~~~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil  128 (329)
T cd05588          54 NHPFLVGLHS-CFQ---TESRLFFVIEFVSGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVL  128 (329)
T ss_pred             CCCCCCceEE-EEE---cCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeE
Confidence            6888888776 443   34678999999 789999998554 57899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+||+|||+++.......                                                         
T Consensus       129 i~~~~~~kL~Dfg~~~~~~~~~~---------------------------------------------------------  151 (329)
T cd05588         129 LDAEGHIKLTDYGMCKEGIRPGD---------------------------------------------------------  151 (329)
T ss_pred             ECCCCCEEECcCccccccccCCC---------------------------------------------------------
Confidence            99999999999999853210000                                                         


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFST  271 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~  271 (886)
                                                       .....+||+.|+|||++.+..++.++|||||||++|||++   ||..
T Consensus       152 ---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         152 ---------------------------------TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             ---------------------------------ccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccc
Confidence                                             0112378999999999999889999999999999999999   7742


Q ss_pred             Cc--------hhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC------HHHHhcCCCCCCC
Q 002736          272 GE--------EKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK------MGELLQSEFLNEP  328 (886)
Q Consensus       272 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps------~~eil~h~~~~~~  328 (886)
                      ..        ........+.... ...+...++.+.+++.+||+.||.+|++      +.++++||||...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~  268 (329)
T cd05588         199 VGMSDNPDQNTEDYLFQVILEKQ-IRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNI  268 (329)
T ss_pred             ccccccccccchHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence            11        1111122222221 1222345677889999999999999987      7899999999764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=2.9e-29  Score=275.10  Aligned_cols=198  Identities=19%  Similarity=0.265  Sum_probs=156.1

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      .+|++++.+++ ++.   ..+.++++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||++||+||||||+||
T Consensus        53 ~~hp~iv~~~~-~~~---~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Ni  127 (316)
T cd05619          53 WEHPFLTHLYC-TFQ---TKENLFFVMEYLNGGDLMFHIQSC-HKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNI  127 (316)
T ss_pred             cCCCcCcceEE-EEE---eCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHE
Confidence            47888888776 443   34678999999 789999999653 5689999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |++.++.+|++|||++........                                                        
T Consensus       128 l~~~~~~~kl~Dfg~~~~~~~~~~--------------------------------------------------------  151 (316)
T cd05619         128 LLDTDGHIKIADFGMCKENMLGDA--------------------------------------------------------  151 (316)
T ss_pred             EECCCCCEEEccCCcceECCCCCC--------------------------------------------------------
Confidence            999999999999999843211000                                                        


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                        ......||+.|+|||++.+..++.++|||||||++|||++   ||.
T Consensus       152 ----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~  197 (316)
T cd05619         152 ----------------------------------KTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFH  197 (316)
T ss_pred             ----------------------------------ceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCC
Confidence                                              0112378999999999998889999999999999999999   776


Q ss_pred             CCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHH-HHhcCCCCCCCc
Q 002736          271 TGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMG-ELLQSEFLNEPR  329 (886)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~-eil~h~~~~~~~  329 (886)
                      ..... .....+.... +........++.+|+.+||..||.+||++. ++++||||....
T Consensus       198 ~~~~~-~~~~~i~~~~-~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~~  255 (316)
T cd05619         198 GHDEE-ELFQSIRMDN-PCYPRWLTREAKDILVKLFVREPERRLGVKGDIRQHPFFREID  255 (316)
T ss_pred             CCCHH-HHHHHHHhCC-CCCCccCCHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCCC
Confidence            54433 2233332221 112223456788999999999999999996 899999998753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=2.8e-29  Score=276.23  Aligned_cols=201  Identities=18%  Similarity=0.243  Sum_probs=158.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.   ..+.+|++||| .|++|.+++.+. ..+++..+..++.||+.||.|||++||+|||||
T Consensus        53 il~~l~hp~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk  127 (323)
T cd05584          53 ILEAVKHPFIVDLIY-AFQ---TGGKLYLILEYLSGGELFMHLERE-GIFMEDTACFYLSEISLALEHLHQQGIIYRDLK  127 (323)
T ss_pred             HHHhCCCCchhceee-EEe---cCCeEEEEEeCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            455668999988777 333   24578999998 888999999654 567899999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+||+|||+++.......                                                    
T Consensus       128 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~----------------------------------------------------  155 (323)
T cd05584         128 PENILLDAQGHVKLTDFGLCKESIHEGT----------------------------------------------------  155 (323)
T ss_pred             HHHeEECCCCCEEEeeCcCCeecccCCC----------------------------------------------------
Confidence            9999999999999999999853211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......||+.|+|||.+.+..++.++|||||||+||||++  
T Consensus       156 --------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~  197 (323)
T cd05584         156 --------------------------------------VTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGA  197 (323)
T ss_pred             --------------------------------------cccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCC
Confidence                                                  0011368999999999998889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                       ||........ +..+..... +.+....+.+.+||.+||.++|.+||     ++.++++||||...
T Consensus       198 ~pf~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~  262 (323)
T cd05584         198 PPFTAENRKKT-IDKILKGKL-NLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV  262 (323)
T ss_pred             CCCCCCCHHHH-HHHHHcCCC-CCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence             7755544333 333322221 22234567888999999999999999     89999999999864

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.96  E-value=1.3e-29  Score=289.60  Aligned_cols=211  Identities=14%  Similarity=0.194  Sum_probs=152.6

Q ss_pred             CceeecccccccCCCCCCc---ccccc-ccCCceEEEEeeCCcchhhhhc---CCCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           28 DGVELTHGDHLRNQGGLSG---VCENE-AAIDPFVHAIEWGDVSLRQWLD---KPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~i~~e~~g~sL~~~l~---~~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      +...+...+|++++.+++-   .|... .....++++|||.+++|.+++.   .....+++..++.|+.||+.||.|||+
T Consensus       109 Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~  188 (440)
T PTZ00036        109 ELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS  188 (440)
T ss_pred             HHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3345556678888775441   12111 1223467899998889988774   234678999999999999999999999


Q ss_pred             cCeeecccCCcceeeccCC-ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          101 QGIVVHNVRPSCFVMSSFN-HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~-~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      +||+||||||+||||+..+ .+||+|||+++......                                           
T Consensus       189 ~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~-------------------------------------------  225 (440)
T PTZ00036        189 KFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQ-------------------------------------------  225 (440)
T ss_pred             CCEecCCcCHHHEEEcCCCCceeeeccccchhccCCC-------------------------------------------
Confidence            9999999999999998665 69999999995432110                                           


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRL  258 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSl  258 (886)
                                                                      .....+||++|+|||++.+. .|+.++|||||
T Consensus       226 ------------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSl  257 (440)
T PTZ00036        226 ------------------------------------------------RSVSYICSRFYRAPELMLGATNYTTHIDLWSL  257 (440)
T ss_pred             ------------------------------------------------CcccCCCCcCccCHHHhcCCCCCCcHHHHHHH
Confidence                                                            00113779999999998764 59999999999


Q ss_pred             HHHHHHHhc---CCCCCchhhHHhHhhccC------------------CCCh----h-----hhccChhhHHHHHHccCC
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHR------------------VLPP----Q-----LLLKFPKEASFCLWLLHP  308 (886)
Q Consensus       259 Gvil~eLl~---pf~~~~~~~~~~~~~~~~------------------~~~~----~-----~~~~~~~~~~li~~~L~~  308 (886)
                      ||+||||++   ||............+...                  .++.    .     +...++++.+||.+||.+
T Consensus       258 Gvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~  337 (440)
T PTZ00036        258 GCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKY  337 (440)
T ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCC
Confidence            999999999   665443322222111100                  0000    0     112346788999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 002736          309 EPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       309 dP~~Rps~~eil~h~~~~~~~  329 (886)
                      ||.+|||+.|+|+||||....
T Consensus       338 dP~~R~ta~e~l~hp~f~~~~  358 (440)
T PTZ00036        338 EPLKRLNPIEALADPFFDDLR  358 (440)
T ss_pred             ChhHCcCHHHHhCChhHHhhh
Confidence            999999999999999997643

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=2.4e-29  Score=276.87  Aligned_cols=200  Identities=19%  Similarity=0.222  Sum_probs=157.3

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++..+. .+.   ..+.++++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++||+||||||
T Consensus        50 ~~~l~hp~iv~~~~-~~~---~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp  124 (323)
T cd05575          50 LKNVKHPFLVGLHY-SFQ---TADKLYFVLDYVNGGELFFHLQRE-RSFPEPRARFYAAEIASALGYLHSLNIIYRDLKP  124 (323)
T ss_pred             HhhCCCCCCCCeeE-EEE---eCCEEEEEEcCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCH
Confidence            34568899988766 332   34678999999 889999999654 5789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++.+||+|||+++.......                                                     
T Consensus       125 ~NIll~~~~~~kl~Dfg~~~~~~~~~~-----------------------------------------------------  151 (323)
T cd05575         125 ENILLDSQGHVVLTDFGLCKEGIEHSK-----------------------------------------------------  151 (323)
T ss_pred             HHeEECCCCcEEEeccCCCcccccCCC-----------------------------------------------------
Confidence            999999999999999999853211000                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           .....+||+.|+|||++.+..++.++|||||||++|||++   
T Consensus       152 -------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~  194 (323)
T cd05575         152 -------------------------------------TTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLP  194 (323)
T ss_pred             -------------------------------------ccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCC
Confidence                                                 0112378999999999999889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH----HHHhcCCCCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM----GELLQSEFLNEP  328 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~----~eil~h~~~~~~  328 (886)
                      ||....... .+..+..... ......++.+.+++.+||+.||.+||++    .+++.||||...
T Consensus       195 pf~~~~~~~-~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~  257 (323)
T cd05575         195 PFYSRDTAE-MYDNILNKPL-RLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSI  257 (323)
T ss_pred             CCCCCCHHH-HHHHHHcCCC-CCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCC
Confidence            776544333 2333322221 1222346788899999999999999987    699999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.96  E-value=7.7e-30  Score=254.77  Aligned_cols=212  Identities=18%  Similarity=0.226  Sum_probs=156.1

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcC----CCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDK----PKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~----~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      +.++....|+|++.+.- +...  ....+++++||..-+|.+.|+-    ..+.++...++.|+.||++||.|||++-|+
T Consensus        78 iaL~REl~h~nvi~Lv~-Vfl~--~d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvl  154 (438)
T KOG0666|consen   78 IALLRELKHPNVISLVK-VFLS--HDKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVL  154 (438)
T ss_pred             HHHHHHhcCCcchhHHH-HHhc--cCceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhhee
Confidence            33444466777766544 3322  2567889999999999998842    235789999999999999999999999999


Q ss_pred             ecccCCcceeeccC----CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          105 VHNVRPSCFVMSSF----NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       105 HrDlkP~NIll~~~----~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      ||||||+|||+..+    |.|||+|+|+++.+..+-.                                           
T Consensus       155 HRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plk-------------------------------------------  191 (438)
T KOG0666|consen  155 HRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLK-------------------------------------------  191 (438)
T ss_pred             eccCCcceEEEeccCCccCeeEeecccHHHHhhcccc-------------------------------------------
Confidence            99999999999876    8999999999976633210                                           


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCc-eeeeeccccceecccccCCCC-CCcccccchH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPM-KQILLMETNWYASPEELAGAP-VSCASDIYRL  258 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSl  258 (886)
                                                                   |+ ....++-|.||+|||.+.|.. ||.+.|||++
T Consensus       192 ---------------------------------------------pl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAi  226 (438)
T KOG0666|consen  192 ---------------------------------------------PLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAI  226 (438)
T ss_pred             ---------------------------------------------ccccCCceEEEEEecChHHhcccccccchhhhHHH
Confidence                                                         00 011237799999999999966 9999999999


Q ss_pred             HHHHHHHhc--CCCCCchhhH-H--------hHhh----------------------------ccCCCCh--------hh
Q 002736          259 GVLLFELFC--PFSTGEEKTR-T--------MSSL----------------------------RHRVLPP--------QL  291 (886)
Q Consensus       259 Gvil~eLl~--pf~~~~~~~~-~--------~~~~----------------------------~~~~~~~--------~~  291 (886)
                      |||+.|||+  |.+.+.+... .        +..+                            +.....+        ..
T Consensus       227 GCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~  306 (438)
T KOG0666|consen  227 GCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKH  306 (438)
T ss_pred             HHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHh
Confidence            999999999  6544432211 1        1111                            1000111        01


Q ss_pred             hccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       292 ~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                      ....+...+|+.+||.+||.+|+|++++|+|+||.+...+
T Consensus       307 k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lp  346 (438)
T KOG0666|consen  307 KVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLP  346 (438)
T ss_pred             cCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCC
Confidence            1134456799999999999999999999999999987554

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=2.5e-29  Score=276.83  Aligned_cols=199  Identities=16%  Similarity=0.200  Sum_probs=157.3

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +.+.+|++++.+++ ++.   ..+.+|++||| .|++|..++.+  ..+++.+++.++.||+.||.|||++||+||||||
T Consensus        56 ~~~l~hp~i~~~~~-~~~---~~~~~~lv~E~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp  129 (324)
T cd05589          56 ANSERHPFLVNLFA-CFQ---TEDHVCFVMEYAAGGDLMMHIHT--DVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKL  129 (324)
T ss_pred             ccccCCCChhceee-EEE---cCCEEEEEEcCCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCH
Confidence            45668999988777 333   35678999999 88999998854  4689999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++.+||+|||+++.......                                                     
T Consensus       130 ~Nill~~~~~~kL~Dfg~~~~~~~~~~-----------------------------------------------------  156 (324)
T cd05589         130 DNLLLDTEGFVKIADFGLCKEGMGFGD-----------------------------------------------------  156 (324)
T ss_pred             HHeEECCCCcEEeCcccCCccCCCCCC-----------------------------------------------------
Confidence            999999999999999999843211000                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           .....+|++.|+|||.+.+..++.++|||||||++|||++   
T Consensus       157 -------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~  199 (324)
T cd05589         157 -------------------------------------RTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGES  199 (324)
T ss_pred             -------------------------------------cccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCC
Confidence                                                 0112378999999999999889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEP  328 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~  328 (886)
                      ||..................  .+...++.+.+++.+||..||.+||     ++.++++||||...
T Consensus       200 pf~~~~~~~~~~~i~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~  263 (324)
T cd05589         200 PFPGDDEEEVFDSIVNDEVR--YPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI  263 (324)
T ss_pred             CCCCCCHHHHHHHHHhCCCC--CCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCC
Confidence            77554443333222222222  2223567788999999999999999     69999999999864

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=240.22  Aligned_cols=288  Identities=14%  Similarity=0.214  Sum_probs=231.6

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      +..|+..|++++.+|+.+++||||.|..-.||+..+..       .+....+|+..|+|+.|+. ++.+||||+.+|.|+
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-------~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~  131 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-------FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVL  131 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-------ceeEecCCCCceEEEEEcc-CceEEEecCCCccEE
Confidence            35699999999999999999999999999999998742       3445567999999999997 899999999999999


Q ss_pred             EEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCC
Q 002736          644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSG  722 (886)
Q Consensus       644 iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~  722 (886)
                      ||+..++.....+..-...+.-+.|+| .+..|+.|+.||.+.+|.+.+       +...+.+. +..+++|=.|.|+ |
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~-------~~~~kv~~Gh~~~ct~G~f~pd-G  202 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPS-------QALCKVMSGHNSPCTCGEFIPD-G  202 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCC-------cceeeEecCCCCCcccccccCC-C
Confidence            999999988888865567777899999 899999999999999999988       44444554 4567999999999 9


Q ss_pred             cEEEEEeCCCeEEEEecCCCCcceEEEec-CCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCC--CceEeec
Q 002736          723 RSLAFGSADHRIYYYDLRNSKIPLCTLIG-HNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDT--PLHSFTG  798 (886)
Q Consensus       723 ~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~-h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~--~~~~~~~  798 (886)
                      +.+++|..||+|++||+.++. |++.+.+ ......++.+. .+..+++|+.++.+++-...+++....+.  -.....+
T Consensus       203 Kr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~  281 (399)
T KOG0296|consen  203 KRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS  281 (399)
T ss_pred             ceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence            999999999999999999997 5777653 23456677876 88889999999999888877664310000  0011124


Q ss_pred             CCCceeEEEEecC---CCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEe
Q 002736          799 HTNVKNFVGLSVW---DGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAAN  875 (886)
Q Consensus       799 h~~~v~~v~~sp~---g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~  875 (886)
                      +...+.+|.+.|.   =.+.|+|+-||+|-|||+...+.....              .|...|..+.|-+ .+ +|+|++
T Consensus       282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--------------~he~~V~~l~w~~-t~-~l~t~c  345 (399)
T KOG0296|consen  282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--------------EHEDGVTKLKWLN-TD-YLLTAC  345 (399)
T ss_pred             chhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--------------cCCCceEEEEEcC-cc-hheeec
Confidence            5555666665554   458999999999999999876543322              3456699999998 67 899999


Q ss_pred             CCCCEEEEEe
Q 002736          876 SSGNIKILEM  885 (886)
Q Consensus       876 ~dg~I~iw~l  885 (886)
                      .||+|++||.
T Consensus       346 ~~g~v~~wDa  355 (399)
T KOG0296|consen  346 ANGKVRQWDA  355 (399)
T ss_pred             cCceEEeeec
Confidence            9999999984

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=1.4e-29  Score=292.84  Aligned_cols=206  Identities=19%  Similarity=0.238  Sum_probs=163.0

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      ...+...+|++++..++ .+.   ..+.+|++||| .|++|.++|..   ....+++.++..++.||+.||+|||++||+
T Consensus       116 ~~~l~~l~Hpniv~~~~-~~~---~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~iv  191 (478)
T PTZ00267        116 LHCLAACDHFGIVKHFD-DFK---SDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMM  191 (478)
T ss_pred             HHHHHhCCCCCEeEEEE-EEE---ECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEE
Confidence            44566678999999887 443   34679999999 79999988743   234689999999999999999999999999


Q ss_pred             ecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      ||||||+|||++.++.+||+|||+++........                                              
T Consensus       192 HrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~----------------------------------------------  225 (478)
T PTZ00267        192 HRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSL----------------------------------------------  225 (478)
T ss_pred             ECCcCHHhEEECCCCcEEEEeCcCceecCCcccc----------------------------------------------
Confidence            9999999999999999999999998543211000                                              


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHH
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~e  264 (886)
                                                                ......+||+.|+|||.+.+..++.++|||||||++||
T Consensus       226 ------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~e  263 (478)
T PTZ00267        226 ------------------------------------------DVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYE  263 (478)
T ss_pred             ------------------------------------------ccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHH
Confidence                                                      00112378999999999998889999999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      |++   ||...... ..+..+.....++.+...++.+.+||.+||..+|.+||++.+++.|+|+..
T Consensus       264 l~tg~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~  328 (478)
T PTZ00267        264 LLTLHRPFKGPSQR-EIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLHTEFLKY  328 (478)
T ss_pred             HHhCCCCCCCCCHH-HHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHhCHHHHH
Confidence            999   77554433 333333333344444456678899999999999999999999999998854

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=4.7e-29  Score=288.41  Aligned_cols=211  Identities=19%  Similarity=0.245  Sum_probs=160.5

Q ss_pred             ceeecccccccCCCCCCcccccc----ccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENE----AAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      ...+...+|++++.....+....    .....++++||| .+++|.++|+.   ....+++.++..|+.||+.||.|||+
T Consensus        82 i~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~  161 (496)
T PTZ00283         82 VCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS  161 (496)
T ss_pred             HHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33455667887776544211111    111246789999 88999999853   23578999999999999999999999


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      +||+||||||+|||++.++.+||+|||+++.........                                         
T Consensus       162 ~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~-----------------------------------------  200 (496)
T PTZ00283        162 KHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDD-----------------------------------------  200 (496)
T ss_pred             CCEecCCCCHHHEEEeCCCCEEEEecccCeecccccccc-----------------------------------------
Confidence            999999999999999999999999999986442110000                                         


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     .....+||+.|+|||.+.+..++.++|||||||
T Consensus       201 -----------------------------------------------~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGv  233 (496)
T PTZ00283        201 -----------------------------------------------VGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGV  233 (496)
T ss_pred             -----------------------------------------------ccccccCCcceeCHHHhCCCCCCcHHHHHHHHH
Confidence                                                           001237899999999999988999999999999


Q ss_pred             HHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          261 LLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       261 il~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      +||||++   ||...... ..+........++.+...++.+.+++.+||+.||.+||++.++++|||+...
T Consensus       234 ilyeLltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~  303 (496)
T PTZ00283        234 LLYELLTLKRPFDGENME-EVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLF  303 (496)
T ss_pred             HHHHHHHCCCCCCCCCHH-HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHHh
Confidence            9999999   77554433 3333333334444445567889999999999999999999999999998754

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=3.8e-29  Score=275.77  Aligned_cols=198  Identities=18%  Similarity=0.246  Sum_probs=152.7

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      .+|++++.+++ ++.   ..+.++++||| .|++|..++.+. ..+++..++.|+.||+.||.|||++||+||||||+||
T Consensus        53 ~~hp~iv~~~~-~~~---~~~~~~lv~E~~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Ni  127 (329)
T cd05618          53 SNHPFLVGLHS-CFQ---TESRLFFVIEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNV  127 (329)
T ss_pred             CCCCcCCceee-EEE---eCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHE
Confidence            37888888776 333   34678899999 889999988554 5789999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |++.++.+||+|||+++.......                                                        
T Consensus       128 li~~~~~~kL~DfG~~~~~~~~~~--------------------------------------------------------  151 (329)
T cd05618         128 LLDSEGHIKLTDYGMCKEGLRPGD--------------------------------------------------------  151 (329)
T ss_pred             EECCCCCEEEeeCCccccccCCCC--------------------------------------------------------
Confidence            999999999999999853211000                                                        


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                        .....+||+.|+|||++.+..++.++|||||||++|||++   ||.
T Consensus       152 ----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  197 (329)
T cd05618         152 ----------------------------------TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             ----------------------------------ccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCc
Confidence                                              0112378999999999999889999999999999999999   773


Q ss_pred             CCc--------hhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC------HHHHhcCCCCCCC
Q 002736          271 TGE--------EKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK------MGELLQSEFLNEP  328 (886)
Q Consensus       271 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps------~~eil~h~~~~~~  328 (886)
                      ...        ........+... ....+....+.+.+|+.+||+.||.+||+      +.++++||||...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~  268 (329)
T cd05618         198 IVGSSDNPDQNTEDYLFQVILEK-QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  268 (329)
T ss_pred             cCCCcCCcccccHHHHHHHHhcC-CCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence            210        011111112211 11222345677889999999999999998      5799999999764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PTZ00284 protein kinase; Provisional

Probab=99.96  E-value=2.9e-29  Score=290.03  Aligned_cols=181  Identities=16%  Similarity=0.268  Sum_probs=138.5

Q ss_pred             cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecccCCcceeeccCC------------
Q 002736           53 AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHNVRPSCFVMSSFN------------  119 (886)
Q Consensus        53 ~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrDlkP~NIll~~~~------------  119 (886)
                      ..+++|++||+.|++|.++|.+. +.+++.+++.|+.||+.||+|||+ .|||||||||+|||++..+            
T Consensus       203 ~~~~~~iv~~~~g~~l~~~l~~~-~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~  281 (467)
T PTZ00284        203 ETGHMCIVMPKYGPCLLDWIMKH-GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALP  281 (467)
T ss_pred             CCceEEEEEeccCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccC
Confidence            34678999999999999999654 578999999999999999999998 5999999999999998665            


Q ss_pred             ----ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCc
Q 002736          120 ----HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGT  195 (886)
Q Consensus       120 ----~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  195 (886)
                          .+||+|||.+.....                                                             
T Consensus       282 ~~~~~vkl~DfG~~~~~~~-------------------------------------------------------------  300 (467)
T PTZ00284        282 PDPCRVRICDLGGCCDERH-------------------------------------------------------------  300 (467)
T ss_pred             CCCceEEECCCCccccCcc-------------------------------------------------------------
Confidence                488888887632100                                                             


Q ss_pred             ccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCC
Q 002736          196 HVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTG  272 (886)
Q Consensus       196 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~  272 (886)
                                                      ..+..+||++|+|||++.+..|+.++|||||||+||||++   ||...
T Consensus       301 --------------------------------~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~  348 (467)
T PTZ00284        301 --------------------------------SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH  348 (467)
T ss_pred             --------------------------------ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                            0112378999999999999999999999999999999999   66543


Q ss_pred             chhhHH--hHhhccCCCChhh---------------------------------------hccChhhHHHHHHccCCCCC
Q 002736          273 EEKTRT--MSSLRHRVLPPQL---------------------------------------LLKFPKEASFCLWLLHPEPS  311 (886)
Q Consensus       273 ~~~~~~--~~~~~~~~~~~~~---------------------------------------~~~~~~~~~li~~~L~~dP~  311 (886)
                      ......  +..... .+|..+                                       ....+.+.+||.+||++||.
T Consensus       349 ~~~~~~~~i~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~  427 (467)
T PTZ00284        349 DNLEHLHLMEKTLG-RLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQ  427 (467)
T ss_pred             ChHHHHHHHHHHcC-CCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChh
Confidence            322111  111100 000000                                       00124456999999999999


Q ss_pred             CCCCHHHHhcCCCCCCC
Q 002736          312 GRPKMGELLQSEFLNEP  328 (886)
Q Consensus       312 ~Rps~~eil~h~~~~~~  328 (886)
                      +|||+.|+|+||||...
T Consensus       428 ~R~ta~e~L~Hp~~~~~  444 (467)
T PTZ00284        428 KRLNARQMTTHPYVLKY  444 (467)
T ss_pred             hCCCHHHHhcCcccccc
Confidence            99999999999999864

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.96  E-value=3.7e-29  Score=280.20  Aligned_cols=203  Identities=15%  Similarity=0.199  Sum_probs=157.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+.+.+|++++.+++ ++.   ..+.++++||| .|++|.+++..  ..+++..+..++.||+.||.|||++||+|||||
T Consensus        96 il~~~~h~~iv~~~~-~~~---~~~~~~lv~Ey~~gg~L~~~l~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk  169 (370)
T cd05596          96 IMAHANSEWIVQLHY-AFQ---DDKYLYMVMEYMPGGDLVNLMSN--YDIPEKWARFYTAEVVLALDAIHSMGFIHRDVK  169 (370)
T ss_pred             HHHhCCCCCcceEEE-EEe---cCCEEEEEEcCCCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence            455678899988776 333   34678999999 78999999854  358999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+||+|||++.........                                                   
T Consensus       170 p~NILl~~~~~~kL~DfG~~~~~~~~~~~---------------------------------------------------  198 (370)
T cd05596         170 PDNMLLDKSGHLKLADFGTCMKMDANGMV---------------------------------------------------  198 (370)
T ss_pred             HHHEEEcCCCCEEEEeccceeeccCCCcc---------------------------------------------------
Confidence            99999999999999999998543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC----CCCcccccchHHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA----PVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~----~~s~~sDIwSlGvil~eL  265 (886)
                                                            .....+||+.|+|||.+.+.    .++.++|||||||+||||
T Consensus       199 --------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyel  240 (370)
T cd05596         199 --------------------------------------RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM  240 (370)
T ss_pred             --------------------------------------cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHH
Confidence                                                  00113789999999998753    388999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccC--CCChhhhccChhhHHHHHHccCCCCCC--CCCHHHHhcCCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEASFCLWLLHPEPSG--RPKMGELLQSEFLNEP  328 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~--Rps~~eil~h~~~~~~  328 (886)
                      ++   ||............+...  ...+.....+..+.+||.+||..+|.+  |+++.|+++||||...
T Consensus       241 ltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~~  310 (370)
T cd05596         241 LVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKND  310 (370)
T ss_pred             HhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCCC
Confidence            99   776554433332222221  122233345678889999999999987  9999999999999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-29  Score=275.63  Aligned_cols=194  Identities=20%  Similarity=0.200  Sum_probs=153.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+-..+|+|++...+ ++.+   .-..+++||. .|+-|.+.+.... .+. .++.+|++||+.||+|||++|||||||
T Consensus       368 ~~~~~~~h~niv~~~~-v~~~---~~~~~~v~e~l~g~ell~ri~~~~-~~~-~e~~~w~~~lv~Av~~LH~~gvvhRDL  441 (612)
T KOG0603|consen  368 ISLLVRDHPNIVKSHD-VYED---GKEIYLVMELLDGGELLRRIRSKP-EFC-SEASQWAAELVSAVDYLHEQGVVHRDL  441 (612)
T ss_pred             hhhhhcCCCcceeecc-eecC---CceeeeeehhccccHHHHHHHhcc-hhH-HHHHHHHHHHHHHHHHHHhcCeeecCC
Confidence            4455678888888776 6654   4567888888 6666666664432 223 788899999999999999999999999


Q ss_pred             CCcceee-ccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          109 RPSCFVM-SSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       109 kP~NIll-~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      ||+|||+ ...++++++|||.++....+.                                              .    
T Consensus       442 kp~NIL~~~~~g~lrltyFG~a~~~~~~~----------------------------------------------~----  471 (612)
T KOG0603|consen  442 KPGNILLDGSAGHLRLTYFGFWSELERSC----------------------------------------------D----  471 (612)
T ss_pred             ChhheeecCCCCcEEEEEechhhhCchhh----------------------------------------------c----
Confidence            9999999 599999999999996542210                                              0    


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                                 ..+-|..|.|||++....|+.++||||||++||+||+
T Consensus       472 -------------------------------------------tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~  508 (612)
T KOG0603|consen  472 -------------------------------------------TPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLT  508 (612)
T ss_pred             -------------------------------------------ccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHh
Confidence                                                       0133778999999998889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||.........+..+....   .-...+..+++|+.+||+.||.+||++.+++.||||
T Consensus       509 G~tp~~~~P~~~ei~~~i~~~~---~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  509 GRTLFAAHPAGIEIHTRIQMPK---FSECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWF  566 (612)
T ss_pred             CCCccccCCchHHHHHhhcCCc---cccccCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence               7766665544554444332   225677889999999999999999999999999999

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.96  E-value=3.1e-29  Score=282.30  Aligned_cols=250  Identities=15%  Similarity=0.203  Sum_probs=161.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ .+.   ..+.+|++||| .|++|.+++.+. ..+++..++.++.||+.||+|||++||+|||||
T Consensus        54 il~~l~h~~iv~l~~-~~~---~~~~~~lv~E~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlK  128 (381)
T cd05626          54 ILAEADNEWVVKLYY-SFQ---DKDNLYFVMDYIPGGDMMSLLIRM-EVFPEVLARFYIAELTLAIESVHKMGFIHRDIK  128 (381)
T ss_pred             HHHhcCCCCeeeeEE-EEe---cCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCc
Confidence            445568888888777 443   34678999999 789999999654 568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||||+..+++|++|||+++.............. ..                  .......+.... ..  .+.|...
T Consensus       129 p~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~-~~--~~~~~~~  186 (381)
T cd05626         129 PDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKG-SH------------------IRQDSMEPSDLW-DD--VSNCRCG  186 (381)
T ss_pred             HHHEEECCCCCEEEeeCcCCccccccccccccccc-cc------------------ccccccCccccc-cc--ccccccc
Confidence            99999999999999999998654322110000000 00                  000000000000 00  0000000


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                           .+           ..+..    ... ............+||+.|+|||.+.+..++.++|||||||++|||++  
T Consensus       187 -----~~-----------~~~~~----~~~-~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~  245 (381)
T cd05626         187 -----DR-----------LKTLE----QRA-TKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQ  245 (381)
T ss_pred             -----cc-----------cchhh----ccc-cccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCC
Confidence                 00           00000    000 00000001123489999999999998889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhcc--CCCChhhhccChhhHHHHHHcc--CCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRH--RVLPPQLLLKFPKEASFCLWLL--HPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L--~~dP~~Rps~~eil~h~~~~~~  328 (886)
                       ||............+..  ....+.....++++.+||.+||  ..+|..|+++.++++||||...
T Consensus       246 ~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~  311 (381)
T cd05626         246 PPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEV  311 (381)
T ss_pred             CCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCC
Confidence             78665544433333321  2222333346788899999855  4455569999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.96  E-value=3.9e-29  Score=281.84  Aligned_cols=249  Identities=15%  Similarity=0.187  Sum_probs=163.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ ++.   ..+.+|++||| .|++|.++|.+. +.+++..++.++.||+.||+|||++||+|||||
T Consensus        54 il~~~~h~~iv~~~~-~~~---~~~~~~lv~E~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlK  128 (382)
T cd05625          54 ILAEADNEWVVRLYY-SFQ---DKDNLYFVMDYIPGGDMMSLLIRM-GIFPEDLARFYIAELTCAVESVHKMGFIHRDIK  128 (382)
T ss_pred             HHHhCCCCcCCeEEE-EEE---eCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            445568899988877 333   35678999999 788999999654 568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++++||+|||++..+...............                 +....+|......     ...|...
T Consensus       129 p~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-----~~~~~~~  186 (382)
T cd05625         129 PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHV-----------------RQDSMDFSNEWGD-----PANCRCG  186 (382)
T ss_pred             HHHEEECCCCCEEEeECCCCcccccccccccccccccc-----------------ccccccccccccc-----ccccccc
Confidence            99999999999999999998654321110000000000                 0000000000000     0000000


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                      .     ...               ..... .............+||+.|+|||++.+..|+.++|||||||+||||++  
T Consensus       187 ~-----~~~---------------~~~~~-~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~  245 (382)
T cd05625         187 D-----RLK---------------PLERR-AARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQ  245 (382)
T ss_pred             c-----ccc---------------chhhh-hccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCC
Confidence            0     000               00000 000000001123489999999999999889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhcc--CCCChhhhccChhhHHHHHHccCCCCCCCCC---HHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRH--RVLPPQLLLKFPKEASFCLWLLHPEPSGRPK---MGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps---~~eil~h~~~~~~  328 (886)
                       ||.........+..+..  ....+.....++++.++|.+|+ .+|.+|++   +.++++||||...
T Consensus       246 ~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~  311 (382)
T cd05625         246 PPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTI  311 (382)
T ss_pred             CCCCCCCHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCc
Confidence             78665544444443332  1222333456788889999976 59999987   9999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=1.5e-29  Score=279.42  Aligned_cols=203  Identities=16%  Similarity=0.194  Sum_probs=156.8

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++..++ ++.   ..+.++++||| .|++|.+++.+....+++..++.++.||+.||.|||++||+||||||
T Consensus        55 ~~~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp  130 (330)
T cd05601          55 LSISNSPWIPQLQY-AFQ---DKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKP  130 (330)
T ss_pred             HHhCCCCCCcceee-EEe---cCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCch
Confidence            34457788877665 333   24678999999 79999999977656799999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++..+.+||+|||++.........                                                    
T Consensus       131 ~NIll~~~~~~kL~Dfg~a~~~~~~~~~----------------------------------------------------  158 (330)
T cd05601         131 ENVLIDRTGHIKLADFGSAARLTANKMV----------------------------------------------------  158 (330)
T ss_pred             HheEECCCCCEEeccCCCCeECCCCCce----------------------------------------------------
Confidence            9999999999999999998543211000                                                    


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC------CCCCCcccccchHHHHHHH
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA------GAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~------~~~~s~~sDIwSlGvil~e  264 (886)
                                                           ......||+.|+|||++.      +..++.++|||||||++||
T Consensus       159 -------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~e  201 (330)
T cd05601         159 -------------------------------------NSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYE  201 (330)
T ss_pred             -------------------------------------eeecccCCccccCHHHhccccccccCCCCCcceeecccceeee
Confidence                                                 011126899999999987      4558899999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCC--CChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRV--LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      |++   ||............+....  ..+.....++.+.+|+.+||. +|.+||++.++++||||...
T Consensus       202 l~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~  269 (330)
T cd05601         202 MIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKI  269 (330)
T ss_pred             eccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence            999   7765544333332222211  112223456778899999998 99999999999999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=267.59  Aligned_cols=250  Identities=20%  Similarity=0.380  Sum_probs=203.6

Q ss_pred             Cccc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCc----------------------------ccC----cc----
Q 002736          562 GDLL-NSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDA----------------------------IIN----EN----  604 (886)
Q Consensus       562 ~~~~-~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~----------------------------~~~----~~----  604 (886)
                      ..+. .|.+.|.++.|++||+|||+||.|+.|+||.+..                            ...    ..    
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3444 7999999999999999999999999999998654                            000    00    


Q ss_pred             ------cccc----------cceE-EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEE
Q 002736          605 ------RDIH----------YPVV-EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID  667 (886)
Q Consensus       605 ------~~~~----------~~~~-~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~  667 (886)
                            ....          .|+. ..+|.+.|.+|.|+.  .++|+|++.|.||+||++.+.+++..|. |..-|+||+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                  0000          1222 237999999999996  7899999999999999999999999995 999999999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceE
Q 002736          668 FSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC  747 (886)
Q Consensus       668 ~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~  747 (886)
                      |+|.|.++|++||-||.|+||+|..       ...+.-...+.-|++++|.|+ |+..++|+.+|.+++|+.+..+. ..
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~-~~  487 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKL-VS  487 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeE-EE
Confidence            9999999999999999999999987       444433345677999999999 99999999999999999988764 32


Q ss_pred             EEe---------cCCCCeEEEEec--CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCce--eEEEEecCCCE
Q 002736          748 TLI---------GHNKTVSYVKFV--DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK--NFVGLSVWDGY  814 (886)
Q Consensus       748 ~~~---------~h~~~V~~v~f~--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v--~~v~~sp~g~~  814 (886)
                      .+.         .|. .|+++-|.  +...++..+.|..|||+|++..      .++..|+|+.+.-  ....|+.||++
T Consensus       488 ~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~------~lv~KfKG~~n~~SQ~~Asfs~Dgk~  560 (712)
T KOG0283|consen  488 DFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK------DLVHKFKGFRNTSSQISASFSSDGKH  560 (712)
T ss_pred             eeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch------hhhhhhcccccCCcceeeeEccCCCE
Confidence            221         133 79999996  4456777889999999999775      4588888876543  44579999999


Q ss_pred             EEEEcCCCcEEEEecC
Q 002736          815 VATGSETNEVFVYHKA  830 (886)
Q Consensus       815 lasgs~Dg~v~iwd~~  830 (886)
                      |++||+|..|+||+..
T Consensus       561 IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  561 IVSASEDSWVYIWKND  576 (712)
T ss_pred             EEEeecCceEEEEeCC
Confidence            9999999999999973

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=5.2e-29  Score=274.27  Aligned_cols=201  Identities=18%  Similarity=0.261  Sum_probs=154.3

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +....|++.+..+.+++.   ..+.+|++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++||+||||||
T Consensus        54 l~~~~~~~~i~~~~~~~~---~~~~~~lv~E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp  129 (324)
T cd05587          54 LALPGKPPFLTQLHSCFQ---TMDRLYFVMEYVNGGDLMYHIQQV-GKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKL  129 (324)
T ss_pred             HHhcCCCCceeeeEEEEE---cCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCH
Confidence            344456554443332332   34678999999 789999999554 5689999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++.+||+|||++.......                                                      
T Consensus       130 ~Nill~~~~~~kL~Dfg~~~~~~~~~------------------------------------------------------  155 (324)
T cd05587         130 DNVMLDAEGHIKIADFGMCKENIFGG------------------------------------------------------  155 (324)
T ss_pred             HHeEEcCCCCEEEeecCcceecCCCC------------------------------------------------------
Confidence            99999999999999999984321100                                                      


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                          ......+||+.|+|||++.+..++.++|||||||++|||++   
T Consensus       156 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~  199 (324)
T cd05587         156 ------------------------------------KTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQP  199 (324)
T ss_pred             ------------------------------------CceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCC
Confidence                                                00112378999999999999889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH-----HHHhcCCCCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM-----GELLQSEFLNEP  328 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~-----~eil~h~~~~~~  328 (886)
                      ||................  +..+....+.+.+++.+||.+||.+|+++     .++++||||...
T Consensus       200 pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~  263 (324)
T cd05587         200 PFDGEDEDELFQSIMEHN--VSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRI  263 (324)
T ss_pred             CCCCCCHHHHHHHHHcCC--CCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence            776554433333332222  12223456788899999999999999976     899999999864

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=7.3e-27  Score=255.61  Aligned_cols=316  Identities=18%  Similarity=0.250  Sum_probs=237.9

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecC
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS  616 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~  616 (886)
                      +.|..||.|++|+..+.....++     -+|++.|+++.|+..|..||+||.|+.|.|||+-..       .-.....+|
T Consensus        81 AVGYaDGsVqif~~~s~~~~~tf-----ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E-------~Gl~rL~GH  148 (888)
T KOG0306|consen   81 AVGYADGSVQIFSLESEEILITF-----NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE-------EGLFRLRGH  148 (888)
T ss_pred             EEEecCceEEeeccCCCceeeee-----cccccceEEEEEcccCceEeecCCCccEEEEEeccc-------eeeEEeecc
Confidence            67889999999999987666665     579999999999999999999999999999998642       122344578


Q ss_pred             CCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchh---
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA---  693 (886)
Q Consensus       617 ~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~---  693 (886)
                      ...|+..-|.. ..+.++|++.|+.|++||+.+..+..+.-.|.+.+|.+++.+   +.+++++.|+.+++|++...   
T Consensus       149 kd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~  224 (888)
T KOG0306|consen  149 KDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDE  224 (888)
T ss_pred             hHHHhHHhccC-CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccccc
Confidence            89999888876 688999999999999999999999999999999999999984   78999999999999998100   


Q ss_pred             ------------------------------------------------------------h-------hhh---------
Q 002736          694 ------------------------------------------------------------I-------LLL---------  697 (886)
Q Consensus       694 ------------------------------------------------------------~-------~~~---------  697 (886)
                                                                                  .       ...         
T Consensus       225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~  304 (888)
T KOG0306|consen  225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE  304 (888)
T ss_pred             ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence                                                                        0       000         


Q ss_pred             --------cc------------------Cce-------------------------------eeeeecCCCeEEEEEeCC
Q 002736          698 --------HL------------------GVS-------------------------------IGTIKTKANVCCVQFPLD  720 (886)
Q Consensus       698 --------~~------------------~~~-------------------------------~~~~~~~~~v~~v~~sp~  720 (886)
                              .+                  +..                               +....|...|.+++++.+
T Consensus       305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d  384 (888)
T KOG0306|consen  305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD  384 (888)
T ss_pred             hhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC
Confidence                    00                  000                               000012234556666655


Q ss_pred             CCcEEEEEeCCCeEEEEecCCCCc---------------------------------------ceEEEecCCCCeEEEEe
Q 002736          721 SGRSLAFGSADHRIYYYDLRNSKI---------------------------------------PLCTLIGHNKTVSYVKF  761 (886)
Q Consensus       721 ~~~~l~~gs~Dg~I~vwDlr~~~~---------------------------------------~~~~~~~h~~~V~~v~f  761 (886)
                       ...+++| +.+.+++|+..+.+.                                       .+.+..+|.+++++++.
T Consensus       385 -~~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~  462 (888)
T KOG0306|consen  385 -SILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL  462 (888)
T ss_pred             -ceeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence             3333333 345566666553321                                       13345689999999999


Q ss_pred             c-CCCEEEEEECCCcEEEEeCCCCCc--cccCC-----CceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCC
Q 002736          762 V-DATTLVSASTDNTLKLWDLSMCTS--RVIDT-----PLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPM  833 (886)
Q Consensus       762 ~-~~~~l~sgs~Dg~i~lwd~~~~~~--~~~~~-----~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~  833 (886)
                      + |+..++|||.|.+|++||......  ....+     ..+++ .-.+.|.|+.+||||+++|.+=-|++|+||-+.+-+
T Consensus       463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK  541 (888)
T KOG0306|consen  463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK  541 (888)
T ss_pred             cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee
Confidence            6 999999999999999999864322  00000     01112 135679999999999999999999999999998755


Q ss_pred             cceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          834 PALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       834 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      -..++             -+|.-+|.|+..+||+. .++||+.|.+||||-+
T Consensus       542 FflsL-------------YGHkLPV~smDIS~DSk-livTgSADKnVKiWGL  579 (888)
T KOG0306|consen  542 FFLSL-------------YGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGL  579 (888)
T ss_pred             eeeee-------------cccccceeEEeccCCcC-eEEeccCCCceEEecc
Confidence            44332             46778899999999999 9999999999999954

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.4e-29  Score=279.73  Aligned_cols=240  Identities=14%  Similarity=0.175  Sum_probs=160.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ .+.   ..+.++++||| .|++|.++|.+. ..+++.+++.|+.||+.||+|||++||+|||||
T Consensus        54 il~~l~h~~iv~~~~-~~~---~~~~~~lv~E~~~~g~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlk  128 (364)
T cd05599          54 ILAEADNPWVVKLYY-SFQ---DENYLYLIMEYLPGGDMMTLLMKK-DTFTEEETRFYIAETILAIDSIHKLGYIHRDIK  128 (364)
T ss_pred             HHHhCCCCCCcceEE-EEE---cCCeEEEEECCCCCcHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC
Confidence            344557899988877 333   35678999999 789999999654 568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+|++|||++.............  ......                 ..++ +         .....+.
T Consensus       129 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~--~~~~~~-----------------~~~~-~---------~~~~~~~  179 (364)
T cd05599         129 PDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYR--ILSHAL-----------------PSNF-L---------DFISKPM  179 (364)
T ss_pred             HHHeEECCCCCEEEeecccceeccccccccccc--cccccc-----------------cccc-c---------ccccccc
Confidence            999999999999999999987543221100000  000000                 0000 0         0000000


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                       .... .                  ......   .........+||++|+|||++.+..++.++|||||||++|||++  
T Consensus       180 -~~~~-~------------------~~~~~~---~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~  236 (364)
T cd05599         180 -SSKR-K------------------AETWKR---NRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGY  236 (364)
T ss_pred             -cccc-c------------------ccchhh---cccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCC
Confidence             0000 0                  000000   00000112479999999999998889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccC--CCChhhhccChhhHHHHHHccCCCCCCCCC---HHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEASFCLWLLHPEPSGRPK---MGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rps---~~eil~h~~~~~~  328 (886)
                       ||............+...  ...+.....++.+.+||.+||. +|.+|++   +.|+++||||...
T Consensus       237 ~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~  302 (364)
T cd05599         237 PPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGV  302 (364)
T ss_pred             CCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence             776554433332222211  1112222356788899999996 9999987   9999999999875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-29  Score=251.74  Aligned_cols=187  Identities=19%  Similarity=0.258  Sum_probs=157.7

Q ss_pred             cccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCcc
Q 002736           51 EAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASC  129 (886)
Q Consensus        51 ~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~  129 (886)
                      ....+++|.+||| .||.|.-.|.+ .+.+++..++.|-..|+.||.|||+++||.||||.+|+||+.+|++||+|||+|
T Consensus       237 FQt~drlCFVMeyanGGeLf~HLsr-er~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLC  315 (516)
T KOG0690|consen  237 FQTQDRLCFVMEYANGGELFFHLSR-ERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLC  315 (516)
T ss_pred             hccCceEEEEEEEccCceEeeehhh-hhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccc
Confidence            3578999999999 99999998954 478999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCccccccc
Q 002736          130 SDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL  209 (886)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (886)
                      +.-....                                                                         
T Consensus       316 KE~I~~g-------------------------------------------------------------------------  322 (516)
T KOG0690|consen  316 KEEIKYG-------------------------------------------------------------------------  322 (516)
T ss_pred             hhccccc-------------------------------------------------------------------------
Confidence            6432210                                                                         


Q ss_pred             ccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCC
Q 002736          210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRV  286 (886)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~  286 (886)
                                       ....+.||||.|+|||++....|+.++|+|.+||++|||+|   ||+........-.++....
T Consensus       323 -----------------~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~  385 (516)
T KOG0690|consen  323 -----------------DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDL  385 (516)
T ss_pred             -----------------ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhc
Confidence                             12345699999999999999999999999999999999999   9977665544444444444


Q ss_pred             CChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCCcC
Q 002736          287 LPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEPRD  330 (886)
Q Consensus       287 ~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~~~  330 (886)
                      ..|.  ..++++..|+..+|.+||.+|..     +.||.+|+||.....
T Consensus       386 kFPr--~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W  432 (516)
T KOG0690|consen  386 KFPR--TLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVDW  432 (516)
T ss_pred             cCCc--cCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccCCH
Confidence            3333  45689999999999999999954     789999999987654

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=5.1e-29  Score=279.03  Aligned_cols=204  Identities=20%  Similarity=0.227  Sum_probs=153.4

Q ss_pred             ceeecccccccCCCCCCccccccc---cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ...+...+|++++..++ ++....   ....+|++|||.+++|.+++..   .+++..+..++.||+.||.|||++||+|
T Consensus        74 ~~~l~~l~h~~ii~~~~-~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivH  149 (364)
T cd07875          74 LVLMKCVNHKNIIGLLN-VFTPQKSLEEFQDVYIVMELMDANLCQVIQM---ELDHERMSYLLYQMLCGIKHLHSAGIIH  149 (364)
T ss_pred             HHHHHhcCCCCccccce-eecccccccccCeEEEEEeCCCCCHHHHHHh---cCCHHHHHHHHHHHHHHHHHHhhCCeec
Confidence            34455678899888776 443222   3346899999988899998843   4789999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||++.++.+||+|||+++..+...                                                 
T Consensus       150 ~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~-------------------------------------------------  180 (364)
T cd07875         150 RDLKPSNIVVKSDCTLKILDFGLARTAGTSF-------------------------------------------------  180 (364)
T ss_pred             CCCCHHHEEECCCCcEEEEeCCCccccCCCC-------------------------------------------------
Confidence            9999999999999999999999985432110                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                ......||+.|+|||++.+..++.++|||||||+||||
T Consensus       181 ------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el  218 (364)
T cd07875         181 ------------------------------------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM  218 (364)
T ss_pred             ------------------------------------------cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHH
Confidence                                                      00112678999999999998899999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCC--------------------------------C--------hhhhccChhhHHHH
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVL--------------------------------P--------PQLLLKFPKEASFC  302 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~--------------------------------~--------~~~~~~~~~~~~li  302 (886)
                      ++   ||............+.....                                +        .........+.+||
T Consensus       219 l~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll  298 (364)
T cd07875         219 IKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLL  298 (364)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHH
Confidence            99   77544332221111110000                                0        00001124567999


Q ss_pred             HHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          303 LWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       303 ~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      .+||..||.+|||+.|+|+||||..
T Consensus       299 ~~mL~~dP~~R~t~~e~L~hp~~~~  323 (364)
T cd07875         299 SKMLVIDASKRISVDEALQHPYINV  323 (364)
T ss_pred             HHhcCcCcccCCCHHHHhcCccccc
Confidence            9999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1e-27  Score=250.62  Aligned_cols=264  Identities=20%  Similarity=0.282  Sum_probs=216.8

Q ss_pred             ecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceE----------EEEecccCCcEEEEEEccCCCCEEEEEeCCC
Q 002736          614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV----------LTEMREHERRVWSIDFSSADPTLLASGSDDG  683 (886)
Q Consensus       614 ~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~----------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg  683 (886)
                      +.|.+.|+.+...|++..++|+.+..+.|.|||..+...          -..+.+|.+.-.+++|++...-.|++|++|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            458899999999999999999999999999999865321          1267899998899999998888999999999


Q ss_pred             cEEEEeCchhhhhhc-cCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCC-CCcceEEEecCCCCeEEEEe
Q 002736          684 SVKLWSINQAILLLH-LGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRN-SKIPLCTLIGHNKTVSYVKF  761 (886)
Q Consensus       684 ~v~lwd~~~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~-~~~~~~~~~~h~~~V~~v~f  761 (886)
                      +|.+||++....... .......-.+...|..|+|+|-...+|++++.|+.+.|||+|+ ...+.....+|...|.|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            999999987543211 1112222235677999999999889999999999999999996 33357788899999999999


Q ss_pred             c--CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCC-CEEEEEcCCCcEEEEecCCCCcceee
Q 002736          762 V--DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD-GYVATGSETNEVFVYHKAFPMPALSF  838 (886)
Q Consensus       762 ~--~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g-~~lasgs~Dg~v~iwd~~~~~~~~~~  838 (886)
                      .  ++..|||||.|++|+|||+|+..     .+++++.+|...|..|.|||+. ..+|+++.|+.+.|||+..-...++-
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~-----~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLN-----KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcc-----cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            5  88999999999999999999875     6899999999999999999985 58999999999999999864333221


Q ss_pred             ccCCCCCCCCCc--c--ccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          839 NFNHADPLSGPE--T--DDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       839 ~~~~~~~~~~~~--~--~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      ......+   .+  +  .+|...|+.+.|+|..+++++++..|+.+.||+|
T Consensus       356 eda~dgp---pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  356 EDAEDGP---PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             hhhccCC---cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence            1111111   11  1  5788899999999999989999999999999987

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=2e-27  Score=235.45  Aligned_cols=250  Identities=18%  Similarity=0.293  Sum_probs=205.0

Q ss_pred             EEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECC-CceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 002736          612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS-RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI  690 (886)
Q Consensus       612 ~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~-t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~  690 (886)
                      ...+|.+.|..+.|+| ++..||||++|..|.+|++. ..+....+++|.+.|+.+.|.+ +++.+++|+.|.+|+.||+
T Consensus        42 ~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEec
Confidence            3457899999999999 89999999999999999964 3456677889999999999997 9999999999999999999


Q ss_pred             chhhhhhccCceeeeeecCC-CeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEE
Q 002736          691 NQAILLLHLGVSIGTIKTKA-NVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLV  768 (886)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~  768 (886)
                      ++       ++.+..++.+. .|++++-+.-+..++.+|+.|+++++||+|+.. ++.++. .+-.++++.|. .+..++
T Consensus       120 ~t-------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  120 ET-------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             cc-------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEeccccccee
Confidence            99       77777776544 466776444445678889999999999999776 366553 34578999997 788999


Q ss_pred             EEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCccee-eccCCCCCCC
Q 002736          769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALS-FNFNHADPLS  847 (886)
Q Consensus       769 sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~-~~~~~~~~~~  847 (886)
                      +|+-|+.|++||++..      ..++++.||...|+.+..+++|.++.+-+.|+++++||+..-.+-.. +...     .
T Consensus       191 sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-----~  259 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-----Q  259 (338)
T ss_pred             eccccCceeeeccccC------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-----e
Confidence            9999999999999987      45899999999999999999999999999999999999986433222 1100     0


Q ss_pred             CCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          848 GPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       848 ~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      ++ ...-..-...++|+|++. .+.+|+.|..+++|+-
T Consensus       260 g~-~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  260 GH-IHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDT  295 (338)
T ss_pred             cc-hhhhhhhcceeeccCCCC-ccccccccceEEEeec
Confidence            00 011122367889999999 9999999999999983

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.6e-29  Score=277.56  Aligned_cols=197  Identities=17%  Similarity=0.220  Sum_probs=153.1

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|+++++++. ++.   ..+.+|++||| .|++|.+++.+. ..+++..++.|+.||+.||.|||++||+||||||+|||
T Consensus        54 ~~p~i~~~~~-~~~---~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nil  128 (330)
T cd05586          54 ESPFIVGLKF-SFQ---TDSDLYLVTDYMSGGELFWHLQKE-GRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENIL  128 (330)
T ss_pred             CCCcCcceEE-EEe---cCCeEEEEEcCCCCChHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeE
Confidence            6888887666 332   34678999999 789999998654 57899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+||+|||++........                                                         
T Consensus       129 i~~~~~~kl~Dfg~a~~~~~~~~---------------------------------------------------------  151 (330)
T cd05586         129 LDATGHIALCDFGLSKANLTDNK---------------------------------------------------------  151 (330)
T ss_pred             ECCCCCEEEecCCcCcCCCCCCC---------------------------------------------------------
Confidence            99999999999999853211100                                                         


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc---CCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                       .....+||+.|+|||++.+.. ++.++|||||||+||||++   ||.
T Consensus       152 ---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~  198 (330)
T cd05586         152 ---------------------------------TTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFY  198 (330)
T ss_pred             ---------------------------------CccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCC
Confidence                                             001137899999999997654 8999999999999999998   776


Q ss_pred             CCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC----CHHHHhcCCCCCCC
Q 002736          271 TGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP----KMGELLQSEFLNEP  328 (886)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp----s~~eil~h~~~~~~  328 (886)
                      ....... +..+.............+.+.+|+.+||.+||.+||    ++.++++||||...
T Consensus       199 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~  259 (330)
T cd05586         199 AEDTQQM-YRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADI  259 (330)
T ss_pred             CCCHHHH-HHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence            5544332 233322222111123457788999999999999998    78999999999864

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.1e-26  Score=284.77  Aligned_cols=278  Identities=15%  Similarity=0.238  Sum_probs=216.7

Q ss_pred             cccccccccceEEeeecCceEEEE-e--ccCcccCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCcccCcccccccc
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKAD-L--NQGDLLNSSNLVCSLSFDR-DGELFAAAGVNKKIKVFECDAIINENRDIHYP  610 (886)
Q Consensus       535 ~~~~~~~d~~~~~w~~~~~~~~~~-l--~~~~~~~h~~~V~sl~f~~-d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~  610 (886)
                      -+++|..|+.|++|++.+...... .  .... ..+...|.+++|++ ++.+||+++.|+.|+|||+.+..       ..
T Consensus       497 ~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-------~~  568 (793)
T PLN00181        497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVE-LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-------LV  568 (793)
T ss_pred             EEEEEeCCCEEEEEECCcccccccccccceEE-ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-------EE
Confidence            356888999999999764211000 0  0001 22456899999997 57899999999999999987521       11


Q ss_pred             eEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 002736          611 VVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI  690 (886)
Q Consensus       611 ~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~  690 (886)
                      .....|...|.+++|+|.++.+|+||+.||+|++||+.+++.+..+..+ ..|+++.|++.++.+|++|+.||.|++||+
T Consensus       569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            2233688999999999877899999999999999999999888888754 689999997657999999999999999999


Q ss_pred             chhhhhhccCceeeee-ecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCC-----CcceEEEecCCCCeEEEEec-C
Q 002736          691 NQAILLLHLGVSIGTI-KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNS-----KIPLCTLIGHNKTVSYVKFV-D  763 (886)
Q Consensus       691 ~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~-----~~~~~~~~~h~~~V~~v~f~-~  763 (886)
                      ++..      ..+..+ .+...|.+++|. + +..|++|+.|++|++||++..     ..++..+.+|...+.+++|+ +
T Consensus       648 ~~~~------~~~~~~~~h~~~V~~v~f~-~-~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~  719 (793)
T PLN00181        648 RNPK------LPLCTMIGHSKTVSYVRFV-D-SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS  719 (793)
T ss_pred             CCCC------ccceEecCCCCCEEEEEEe-C-CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence            8731      123333 356789999997 4 678999999999999999853     23578899999999999997 8


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCccc-----cCCCc--eEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEec
Q 002736          764 ATTLVSASTDNTLKLWDLSMCTSRV-----IDTPL--HSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK  829 (886)
Q Consensus       764 ~~~l~sgs~Dg~i~lwd~~~~~~~~-----~~~~~--~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~  829 (886)
                      +.+|++|+.|++|++|+........     ...++  .....|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            8999999999999999986542100     00001  112345677999999999999999999999999986

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.96  E-value=4.9e-29  Score=278.81  Aligned_cols=203  Identities=16%  Similarity=0.208  Sum_probs=155.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ ++.   ..+.+|++||| .|++|.+++..  ..+++..++.++.||+.||+|||++||+|||||
T Consensus        96 i~~~~~hp~iv~~~~-~~~---~~~~~~lv~Ey~~gg~L~~~l~~--~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLK  169 (370)
T cd05621          96 IMAFANSPWVVQLFC-AFQ---DDKYLYMVMEYMPGGDLVNLMSN--YDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVK  169 (370)
T ss_pred             HHHhCCCCCEeeEEE-EEE---cCCEEEEEEcCCCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC
Confidence            344568899988877 333   34678999999 78999999954  358999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+||+|||++.........                                                   
T Consensus       170 p~NILl~~~~~~kL~DFG~a~~~~~~~~~---------------------------------------------------  198 (370)
T cd05621         170 PDNMLLDKHGHLKLADFGTCMKMDETGMV---------------------------------------------------  198 (370)
T ss_pred             HHHEEECCCCCEEEEecccceecccCCce---------------------------------------------------
Confidence            99999999999999999998543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC----CCcccccchHHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP----VSCASDIYRLGVLLFEL  265 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~----~s~~sDIwSlGvil~eL  265 (886)
                                                            .....+||+.|+|||++.+..    ++.++|||||||+||||
T Consensus       199 --------------------------------------~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyel  240 (370)
T cd05621         199 --------------------------------------RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEM  240 (370)
T ss_pred             --------------------------------------ecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHH
Confidence                                                  001237899999999997643    78999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccC--CCChhhhccChhhHHHHHHccCCCCCC--CCCHHHHhcCCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEASFCLWLLHPEPSG--RPKMGELLQSEFLNEP  328 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~--Rps~~eil~h~~~~~~  328 (886)
                      ++   ||............+...  ...+.....++.+.+++.+||..+|.+  |+++.|+++||||+..
T Consensus       241 l~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         241 LVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKND  310 (370)
T ss_pred             HhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCCC
Confidence            99   886554433333332221  122223345677889999999865543  8999999999999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=6.8e-29  Score=272.56  Aligned_cols=196  Identities=20%  Similarity=0.233  Sum_probs=155.6

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++.+++ ++.   ..+.+|++||| .|++|..++.+. ..+++.++..++.||+.||.|||++||+||||||+||+
T Consensus        54 ~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil  128 (318)
T cd05570          54 KHPFLTQLHS-CFQ---TKDRLFFVMEYVNGGDLMFHIQRS-GRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVL  128 (318)
T ss_pred             CCCCccceee-EEE---cCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeE
Confidence            6888888776 443   34678999999 789999988554 57899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+||+|||+++.......                                                         
T Consensus       129 l~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------------------  151 (318)
T cd05570         129 LDSEGHIKIADFGMCKEGILGGV---------------------------------------------------------  151 (318)
T ss_pred             ECCCCcEEecccCCCeecCcCCC---------------------------------------------------------
Confidence            99999999999999843211000                                                         


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFST  271 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~  271 (886)
                                                       .....+||+.|+|||.+.+..++.++|||||||++|||++   ||..
T Consensus       152 ---------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~  198 (318)
T cd05570         152 ---------------------------------TTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEG  198 (318)
T ss_pred             ---------------------------------cccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCC
Confidence                                             0112368999999999999899999999999999999998   7755


Q ss_pred             CchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH-----HHHhcCCCCCCC
Q 002736          272 GEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM-----GELLQSEFLNEP  328 (886)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~-----~eil~h~~~~~~  328 (886)
                      ................  .+...++.+.+|+.+||..||.+||++     .++++||||...
T Consensus       199 ~~~~~~~~~i~~~~~~--~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~  258 (318)
T cd05570         199 DDEDELFQSILEDEVR--YPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREI  258 (318)
T ss_pred             CCHHHHHHHHHcCCCC--CCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence            4443332222222221  222355778899999999999999999     999999999864

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=3.7e-29  Score=275.63  Aligned_cols=200  Identities=19%  Similarity=0.214  Sum_probs=157.3

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++..+. ++.   ..+.++++||| .|++|..++.+. ..+++.+++.++.||+.||+|||++||+||||||
T Consensus        50 l~~~~hp~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp  124 (325)
T cd05604          50 LKNVKHPFLVGLHY-SFQ---TTEKLYFVLDFVNGGELFFHLQRE-RSFPEPRARFYAAEIASALGYLHSINIVYRDLKP  124 (325)
T ss_pred             HHhCCCCCCccEEE-EEe---cCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCH
Confidence            45578899988776 332   35678999999 889999988554 5789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++.+||+|||+++.......                                                     
T Consensus       125 ~NIll~~~~~~kL~DfG~~~~~~~~~~-----------------------------------------------------  151 (325)
T cd05604         125 ENILLDSQGHVVLTDFGLCKEGIAQSD-----------------------------------------------------  151 (325)
T ss_pred             HHeEECCCCCEEEeecCCcccCCCCCC-----------------------------------------------------
Confidence            999999999999999999853211000                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           .....+||+.|+|||++.+..++.++|||||||++|||++   
T Consensus       152 -------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~  194 (325)
T cd05604         152 -------------------------------------TTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLP  194 (325)
T ss_pred             -------------------------------------CcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCC
Confidence                                                 0112378999999999999889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH----HHHhcCCCCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM----GELLQSEFLNEP  328 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~----~eil~h~~~~~~  328 (886)
                      ||......... ..+..... ......+..+.+++.+||..+|.+||++    .+++.||||...
T Consensus       195 pf~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~  257 (325)
T cd05604         195 PFYCRDVAEMY-DNILHKPL-VLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESL  257 (325)
T ss_pred             CCCCCCHHHHH-HHHHcCCc-cCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence            77655443333 33322221 1122356778899999999999999876    589999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.8e-27  Score=259.68  Aligned_cols=321  Identities=16%  Similarity=0.255  Sum_probs=248.3

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecC
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS  616 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~  616 (886)
                      +++.-+|.|++|||.=+..+..     +..|.++|+.++|+|.+.+|++||.|-+||||++...       .+.....+|
T Consensus        25 LtslHsG~IQlWDYRM~tli~r-----FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-------rclftL~GH   92 (1202)
T KOG0292|consen   25 LTSLHSGVIQLWDYRMGTLIDR-----FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-------RCLFTLLGH   92 (1202)
T ss_pred             EEeecCceeeeehhhhhhHHhh-----hhccCCccceeeecCCCCeEEecCCccEEEEEecccc-------eehhhhccc
Confidence            5566789999999986655533     3679999999999999999999999999999999763       233345679


Q ss_pred             CCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhh
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILL  696 (886)
Q Consensus       617 ~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~  696 (886)
                      -.-|..+.|++ .-..|+|+|.|-+|+||+.++++++..+.+|..-|+|..|+| ...+++|+|-|.+|++||+..-...
T Consensus        93 lDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk  170 (1202)
T KOG0292|consen   93 LDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKK  170 (1202)
T ss_pred             cceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhcc
Confidence            99999999998 678999999999999999999999999999999999999999 7889999999999999998542110


Q ss_pred             h------------------ccCc---ee-eeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCc-ceEEEecC
Q 002736          697 L------------------HLGV---SI-GTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-PLCTLIGH  752 (886)
Q Consensus       697 ~------------------~~~~---~~-~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~-~~~~~~~h  752 (886)
                      .                  -++.   .+ ..+. |...|+-++|+|. -.+|++|+.|..|++|.+...+. .+.++.||
T Consensus       171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH  249 (1202)
T KOG0292|consen  171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTCRGH  249 (1202)
T ss_pred             CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecCCcceeeEEEeccccceeehhhhcc
Confidence            0                  0111   01 1111 3456999999998 67999999999999999876542 45678999


Q ss_pred             CCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCC
Q 002736          753 NKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAF  831 (886)
Q Consensus       753 ~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~  831 (886)
                      ...|+++-|+ ..++++|.|.|++|++||+...      .++++|+.-...-+.++-+|..+.+|+|-..| +.||-+..
T Consensus       250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR------t~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkleR  322 (1202)
T KOG0292|consen  250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR------TSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKLER  322 (1202)
T ss_pred             cCCcceEEecCccceeEecCCCccEEEEecccc------cceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEEcc
Confidence            9999999997 7789999999999999999887      45899988788899999999999888876444 55665553


Q ss_pred             CC----------------cceeeccCCCCCCCCCcc---ccCCCcEEEEEEccCCCcEEEEEeCCCC
Q 002736          832 PM----------------PALSFNFNHADPLSGPET---DDAAQFISSVCWRGQSSNTLVAANSSGN  879 (886)
Q Consensus       832 ~~----------------~~~~~~~~~~~~~~~~~~---~~~~~~V~~v~~s~~~~~~l~s~~~dg~  879 (886)
                      ..                .+..+.|...........   ....+++.++.++|....+|++.+-|+.
T Consensus       323 Erpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~  389 (1202)
T KOG0292|consen  323 ERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG  389 (1202)
T ss_pred             cCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence            22                233333332111111111   1124678889999987745566554443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.4e-27  Score=226.90  Aligned_cols=241  Identities=18%  Similarity=0.281  Sum_probs=211.9

Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhh
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI  694 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~  694 (886)
                      .+.++|..+.||- ++++.++++.|.+|++|+...+.+++++.+|...|..++.+. +...|++|+.|..|.+||+++  
T Consensus        15 ~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T--   90 (307)
T KOG0316|consen   15 CAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT--   90 (307)
T ss_pred             ccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc--
Confidence            4778999999998 799999999999999999999999999999999999999986 889999999999999999999  


Q ss_pred             hhhccCceeeeeec-CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC-cceEEEecCCCCeEEEEecCCCEEEEEEC
Q 002736          695 LLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK-IPLCTLIGHNKTVSYVKFVDATTLVSAST  772 (886)
Q Consensus       695 ~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~-~~~~~~~~h~~~V~~v~f~~~~~l~sgs~  772 (886)
                           ++.+..+.+ .+.|+.|+|+.+ ...+++|+.|.++++||-|... .|++.+..-...|.+|... +..|++||.
T Consensus        91 -----Gkv~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~  163 (307)
T KOG0316|consen   91 -----GKVDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSV  163 (307)
T ss_pred             -----CeeeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeecc
Confidence                 777777765 567999999998 7899999999999999998754 4788888888999999985 678999999


Q ss_pred             CCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccc
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETD  852 (886)
Q Consensus       773 Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  852 (886)
                      ||+++.||++.+..      .--+  -..+|++++|+++++....++.|+++++-|..+++.+.+++-..          
T Consensus       164 DGtvRtydiR~G~l------~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk----------  225 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTL------SSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK----------  225 (307)
T ss_pred             CCcEEEEEeeccee------ehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc----------
Confidence            99999999998842      2223  34579999999999999999999999999999999998776322          


Q ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEeC
Q 002736          853 DAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV  886 (886)
Q Consensus       853 ~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l~  886 (886)
                       +..+-..+|++.... .+++|+.||.|.+|+|+
T Consensus       226 -n~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  226 -NMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             -cceeeeeeeecccce-eEEeccCCceEEEEEec
Confidence             234566778887777 89999999999999985

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=5.5e-29  Score=278.22  Aligned_cols=206  Identities=19%  Similarity=0.231  Sum_probs=153.3

Q ss_pred             CceeecccccccCCCCCCccccccc---cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      +...+...+|++++..++ ++....   ....+|++|||.+++|.+++..   .+++..+..++.||+.||.|||++||+
T Consensus        70 E~~~l~~l~h~niv~~~~-~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~iv  145 (359)
T cd07876          70 ELVLLKCVNHKNIISLLN-VFTPQKSLEEFQDVYLVMELMDANLCQVIHM---ELDHERMSYLLYQMLCGIKHLHSAGII  145 (359)
T ss_pred             HHHHHHhCCCCCEeeeee-eeccCCCccccceeEEEEeCCCcCHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            344556678999988776 443322   2245799999988888888743   478999999999999999999999999


Q ss_pred             ecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      ||||||+|||++.++.+||+|||+++......                                                
T Consensus       146 HrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~------------------------------------------------  177 (359)
T cd07876         146 HRDLKPSNIVVKSDCTLKILDFGLARTACTNF------------------------------------------------  177 (359)
T ss_pred             cCCCCHHHEEECCCCCEEEecCCCccccccCc------------------------------------------------
Confidence            99999999999999999999999985321110                                                


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHH
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~e  264 (886)
                                                                 ......||+.|+|||.+.+..++.++|||||||++||
T Consensus       178 -------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~e  214 (359)
T cd07876         178 -------------------------------------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGE  214 (359)
T ss_pred             -------------------------------------------cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHH
Confidence                                                       0011267899999999999889999999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhc----------------------cC-CCC--------h---------hhhccChhhHHH
Q 002736          265 LFC---PFSTGEEKTRTMSSLR----------------------HR-VLP--------P---------QLLLKFPKEASF  301 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~----------------------~~-~~~--------~---------~~~~~~~~~~~l  301 (886)
                      |++   ||............+.                      .. ..+        +         ......+.+.+|
T Consensus       215 l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  294 (359)
T cd07876         215 LVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDL  294 (359)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHH
Confidence            999   7754432211100000                      00 000        0         000123567899


Q ss_pred             HHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          302 CLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       302 i~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      |.+||.+||.+|||+.|+|+||||...
T Consensus       295 i~~mL~~dP~~R~t~~e~l~hp~~~~~  321 (359)
T cd07876         295 LSKMLVIDPDKRISVDEALRHPYITVW  321 (359)
T ss_pred             HHHHhccCcccCCCHHHHhcCchhhhh
Confidence            999999999999999999999998753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=1.5e-29  Score=276.45  Aligned_cols=205  Identities=19%  Similarity=0.218  Sum_probs=175.8

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccC--e
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQG--I  103 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~g--i  103 (886)
                      .+.-.|...+|+|++++|. .+.+... ..+.++.|+ ..|+|++|+++. +.++...++.+++||+.||.|||++.  |
T Consensus        90 ~Ev~lLKsL~H~NIirfy~-SW~d~~n-~~in~iTEL~TSGtLr~Y~kk~-~~vn~kaik~W~RQILkGL~yLHs~~PPI  166 (632)
T KOG0584|consen   90 SEVHLLKSLKHPNIIRFYD-SWVDTDN-KTINFITELFTSGTLREYRKKH-RRVNIKAIKSWCRQILKGLVYLHSQDPPI  166 (632)
T ss_pred             HHHHHHccCCCCceeeeee-heecCCC-ceeeeeeecccCCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhhhhhcCCCCc
Confidence            3444556689999999999 6766554 556666666 999999999776 68899999999999999999999995  9


Q ss_pred             eecccCCcceeec-cCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          104 VVHNVRPSCFVMS-SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       104 iHrDlkP~NIll~-~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      ||||||.+||+|+ .-|.|||+|+|+|......                                               
T Consensus       167 IHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s-----------------------------------------------  199 (632)
T KOG0584|consen  167 IHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS-----------------------------------------------  199 (632)
T ss_pred             cccccccceEEEcCCcCceeecchhHHHHhhcc-----------------------------------------------
Confidence            9999999999998 6799999999999543211                                               


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLL  262 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil  262 (886)
                                                                   +....+|||.|||||.+. ..|+..+||||||+.+
T Consensus       200 ---------------------------------------------~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCm  233 (632)
T KOG0584|consen  200 ---------------------------------------------HAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCM  233 (632)
T ss_pred             ---------------------------------------------ccceeccCccccChHHHh-hhcchhhhhhhhhHHH
Confidence                                                         122259999999999997 4599999999999999


Q ss_pred             HHHhc---CCCCCchhhHHhHhhccCCCChhhhc-cChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          263 FELFC---PFSTGEEKTRTMSSLRHRVLPPQLLL-KFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       263 ~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      .||+|   ||..+......++.+..+..|..+.. ..|+.++||.+||.. .+.|||+.|+|+||||...
T Consensus       234 LEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  234 LEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLKDPFFDED  302 (632)
T ss_pred             HHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhhChhhccc
Confidence            99999   99999999999999999988877654 468899999999999 9999999999999999975

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=5.6e-29  Score=274.28  Aligned_cols=198  Identities=16%  Similarity=0.233  Sum_probs=152.3

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      .|++++.++. ++.   ..+.+|++||| .|++|.+++.+. +.+++.+++.|+.||+.||.|||++||+||||||+|||
T Consensus        54 ~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nil  128 (327)
T cd05617          54 SNPFLVGLHS-CFQ---TTSRLFLVIEYVNGGDLMFHMQRQ-RKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVL  128 (327)
T ss_pred             CCCCEeeEEE-EEE---eCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE
Confidence            5777777665 332   34678999999 789999988544 57899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+||+|||+++.......                                                         
T Consensus       129 i~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------------------  151 (327)
T cd05617         129 LDADGHIKLTDYGMCKEGLGPGD---------------------------------------------------------  151 (327)
T ss_pred             EeCCCCEEEeccccceeccCCCC---------------------------------------------------------
Confidence            99999999999999853211000                                                         


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFST  271 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~  271 (886)
                                                       .....+||+.|+|||.+.+..++.++|||||||+||||++   ||..
T Consensus       152 ---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~  198 (327)
T cd05617         152 ---------------------------------TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  198 (327)
T ss_pred             ---------------------------------ceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCc
Confidence                                             0112378999999999999889999999999999999999   7742


Q ss_pred             Cc------hhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC------HHHHhcCCCCCCCc
Q 002736          272 GE------EKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK------MGELLQSEFLNEPR  329 (886)
Q Consensus       272 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps------~~eil~h~~~~~~~  329 (886)
                      ..      ........+.... ...+...++.+.+++.+||.+||.+|++      +.+++.||||....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~~  267 (327)
T cd05617         199 ITDNPDMNTEDYLFQVILEKP-IRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSID  267 (327)
T ss_pred             cCCCcccccHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCCC
Confidence            21      1111222222221 1222345577889999999999999998      57999999998754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=4.4e-29  Score=284.12  Aligned_cols=206  Identities=16%  Similarity=0.183  Sum_probs=155.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+.+.+|+|++.+++ ++.   ..+..+++||+..++|.+++......+++.+++.|+.||+.||.|||++||||||||
T Consensus       212 ~iL~~L~HpnIv~l~~-~~~---~~~~~~lv~e~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLK  287 (461)
T PHA03211        212 RLLRRLSHPAVLALLD-VRV---VGGLTCLVLPKYRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIK  287 (461)
T ss_pred             HHHHHCCCCCCCcEEE-EEE---ECCEEEEEEEccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCC
Confidence            3455678999998877 443   346788899997889999997655679999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||||+.++.+||+|||+++........                                                   
T Consensus       288 P~NILl~~~~~vkL~DFGla~~~~~~~~~---------------------------------------------------  316 (461)
T PHA03211        288 TENVLVNGPEDICLGDFGAACFARGSWST---------------------------------------------------  316 (461)
T ss_pred             HHHEEECCCCCEEEcccCCceeccccccc---------------------------------------------------
Confidence            99999999999999999998543111000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ......+||+.|+|||++.+..++.++|||||||+||||++  
T Consensus       317 -------------------------------------~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~  359 (461)
T PHA03211        317 -------------------------------------PFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHT  359 (461)
T ss_pred             -------------------------------------ccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcC
Confidence                                                 00011378999999999999889999999999999999986  


Q ss_pred             -CCCCCch-------hhHHhHhhccC-----CCC-------------------------h---hhhccChhhHHHHHHcc
Q 002736          268 -PFSTGEE-------KTRTMSSLRHR-----VLP-------------------------P---QLLLKFPKEASFCLWLL  306 (886)
Q Consensus       268 -pf~~~~~-------~~~~~~~~~~~-----~~~-------------------------~---~~~~~~~~~~~li~~~L  306 (886)
                       +++....       .......+...     .++                         +   ......+.+.+||.+||
T Consensus       360 ~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL  439 (461)
T PHA03211        360 ASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRAL  439 (461)
T ss_pred             CCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHc
Confidence             3433211       11111111110     000                         0   01122346779999999


Q ss_pred             CCCCCCCCCHHHHhcCCCCCC
Q 002736          307 HPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       307 ~~dP~~Rps~~eil~h~~~~~  327 (886)
                      ..||.+|||+.|+|+||||+.
T Consensus       440 ~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        440 TFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             ccChhhCcCHHHHhhCcccCC
Confidence            999999999999999999974

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.96  E-value=6.2e-29  Score=273.57  Aligned_cols=183  Identities=19%  Similarity=0.293  Sum_probs=147.1

Q ss_pred             CCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCC
Q 002736           54 IDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDS  132 (886)
Q Consensus        54 ~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~  132 (886)
                      .+.++++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        73 ~~~~~lv~E~~~~g~L~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~  151 (323)
T cd05616          73 MDRLYFVMEYVNGGDLMYQIQQV-GRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  151 (323)
T ss_pred             CCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceec
Confidence            4678999999 789999998554 56899999999999999999999999999999999999999999999999998532


Q ss_pred             CCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccccc
Q 002736          133 GSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNR  212 (886)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  212 (886)
                      .....                                                                           
T Consensus       152 ~~~~~---------------------------------------------------------------------------  156 (323)
T cd05616         152 MWDGV---------------------------------------------------------------------------  156 (323)
T ss_pred             CCCCC---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             cccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCCh
Q 002736          213 VNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPP  289 (886)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~  289 (886)
                                     .....+||+.|+|||++.+..++.++|||||||++|||++   ||..................  
T Consensus       157 ---------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~--  219 (323)
T cd05616         157 ---------------TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVA--  219 (323)
T ss_pred             ---------------ccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC--
Confidence                           0112378999999999999899999999999999999999   77655444333333322221  


Q ss_pred             hhhccChhhHHHHHHccCCCCCCCCCH-----HHHhcCCCCCCCc
Q 002736          290 QLLLKFPKEASFCLWLLHPEPSGRPKM-----GELLQSEFLNEPR  329 (886)
Q Consensus       290 ~~~~~~~~~~~li~~~L~~dP~~Rps~-----~eil~h~~~~~~~  329 (886)
                      .+...++++.+++.+||..+|.+|+++     .++++||||....
T Consensus       220 ~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~~  264 (323)
T cd05616         220 YPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYID  264 (323)
T ss_pred             CCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCCC
Confidence            223456788899999999999999974     8999999998653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.96  E-value=3.5e-29  Score=258.09  Aligned_cols=202  Identities=18%  Similarity=0.221  Sum_probs=144.6

Q ss_pred             cCCceEEEEeeCCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCcc-C
Q 002736           53 AIDPFVHAIEWGDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASC-S  130 (886)
Q Consensus        53 ~~~~~~i~~e~~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~-~  130 (886)
                      -.++.||+.|..|.|+.++|+++ ..+++...+++|..||+++|.|||+.+++|.||||+|||+.++..++.-+-+.. .
T Consensus       162 yrghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~  241 (415)
T KOG0671|consen  162 YRGHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVC  241 (415)
T ss_pred             ccCceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccc
Confidence            35788999999999999999764 467999999999999999999999999999999999999977665554333221 0


Q ss_pred             CCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccc
Q 002736          131 DSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILD  210 (886)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  210 (886)
                      ...                          ..+...++.-|||.++....                               
T Consensus       242 ~~r--------------------------~~ks~~I~vIDFGsAtf~~e-------------------------------  264 (415)
T KOG0671|consen  242 FIR--------------------------PLKSTAIKVIDFGSATFDHE-------------------------------  264 (415)
T ss_pred             eec--------------------------cCCCcceEEEecCCcceecc-------------------------------
Confidence            000                          00001122233333322110                               


Q ss_pred             cccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCc--hhhHHhHhhccC
Q 002736          211 NRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGE--EKTRTMSSLRHR  285 (886)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~--~~~~~~~~~~~~  285 (886)
                                       .....+.|..|+|||++.+-+++..+||||+||||+||.+   -|.+.+  ++-+.|..+.. 
T Consensus       265 -----------------~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlG-  326 (415)
T KOG0671|consen  265 -----------------HHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILG-  326 (415)
T ss_pred             -----------------CcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhC-
Confidence                             1244588999999999999999999999999999999999   444444  44444544433 


Q ss_pred             CCChhhhc-------------------------------------------cChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          286 VLPPQLLL-------------------------------------------KFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       286 ~~~~~~~~-------------------------------------------~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      ++|.....                                           ...++.+|+.+||.+||.+|+|+.|+|.|
T Consensus       327 p~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  327 PIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSH  406 (415)
T ss_pred             CCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcC
Confidence            22211100                                           01134599999999999999999999999


Q ss_pred             CCCCCCc
Q 002736          323 EFLNEPR  329 (886)
Q Consensus       323 ~~~~~~~  329 (886)
                      |||+...
T Consensus       407 pFF~~~~  413 (415)
T KOG0671|consen  407 PFFARLT  413 (415)
T ss_pred             HHhhcCC
Confidence            9998653

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=4.6e-29  Score=277.13  Aligned_cols=207  Identities=15%  Similarity=0.207  Sum_probs=155.4

Q ss_pred             CceeecccccccCCCCCCcccccc---ccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENE---AAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      +...+.+.+|++++..+. ++...   .....+|++||+.|++|.++++.  ..+++.+++.++.||+.||.|||++||+
T Consensus        64 E~~~l~~l~h~~iv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~iv  140 (343)
T cd07878          64 ELRLLKHMKHENVIGLLD-VFTPATSIENFNEVYLVTNLMGADLNNIVKC--QKLSDEHVQFLIYQLLRGLKYIHSAGII  140 (343)
T ss_pred             HHHHHHhcCCCchhhhhh-hhcccccccccCcEEEEeecCCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            344556678888888776 44322   12345799999999999998854  4689999999999999999999999999


Q ss_pred             ecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      ||||||+|||++.++.+||+|||+++.....                                                 
T Consensus       141 Hrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------  171 (343)
T cd07878         141 HRDLKPSNVAVNEDCELRILDFGLARQADDE-------------------------------------------------  171 (343)
T ss_pred             cccCChhhEEECCCCCEEEcCCccceecCCC-------------------------------------------------
Confidence            9999999999999999999999998532110                                                 


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHH
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLF  263 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~  263 (886)
                                                                  ....+||++|+|||++.+ ..++.++|||||||++|
T Consensus       172 --------------------------------------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  207 (343)
T cd07878         172 --------------------------------------------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  207 (343)
T ss_pred             --------------------------------------------cCCccccccccCchHhcCCccCCchhhhHhHHHHHH
Confidence                                                        011368999999999977 45899999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhhc--cCC----------------------CC-----hhhhccChhhHHHHHHccCCCCC
Q 002736          264 ELFC---PFSTGEEKTRTMSSLR--HRV----------------------LP-----PQLLLKFPKEASFCLWLLHPEPS  311 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~~--~~~----------------------~~-----~~~~~~~~~~~~li~~~L~~dP~  311 (886)
                      ||++   ||..............  ...                      .+     ..+....+.+.+|+.+||..||.
T Consensus       208 el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~  287 (343)
T cd07878         208 ELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSD  287 (343)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChh
Confidence            9999   6644332211111100  000                      00     01122345577999999999999


Q ss_pred             CCCCHHHHhcCCCCCCCcC
Q 002736          312 GRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       312 ~Rps~~eil~h~~~~~~~~  330 (886)
                      +|||+.|+|+||||.....
T Consensus       288 ~R~s~~ell~hp~~~~~~~  306 (343)
T cd07878         288 KRISASEALAHPYFSQYHD  306 (343)
T ss_pred             hCCCHHHHhcCcchhccCC
Confidence            9999999999999987543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=249.48  Aligned_cols=264  Identities=23%  Similarity=0.311  Sum_probs=224.5

Q ss_pred             ccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCee
Q 002736          542 EGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLS  621 (886)
Q Consensus       542 d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~  621 (886)
                      .-.+.+++..+..+..++     ..-+..|+++.|-.||+++|+|+..|.|+|||..+..       ..-...+|..+|.
T Consensus        47 S~rvqly~~~~~~~~k~~-----srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~  114 (487)
T KOG0310|consen   47 SVRVQLYSSVTRSVRKTF-----SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVH  114 (487)
T ss_pred             ccEEEEEecchhhhhhhH-----HhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCcee
Confidence            456788887776655444     2347799999999999999999999999999965410       0112236899999


Q ss_pred             eEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCc
Q 002736          622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGV  701 (886)
Q Consensus       622 ~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~  701 (886)
                      .+.|+|+++.++++|+.|+.+++||+.+......+.+|++.|.|.+|+|.++.+++|||.||+|++||++..      ..
T Consensus       115 ~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~------~~  188 (487)
T KOG0310|consen  115 VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL------TS  188 (487)
T ss_pred             EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC------Cc
Confidence            999999999999999999999999999998877899999999999999988999999999999999999983      37


Q ss_pred             eeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEe
Q 002736          702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD  780 (886)
Q Consensus       702 ~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd  780 (886)
                      .+..+.+..+|-.|.+-|. |..||+++ .+.|++||+.++.+.+..+..|.+.|+|+++. ++..|+|||-|+.+++||
T Consensus       189 ~v~elnhg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd  266 (487)
T KOG0310|consen  189 RVVELNHGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD  266 (487)
T ss_pred             eeEEecCCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence            7888999999999999999 78888876 46799999998776566676799999999996 889999999999999999


Q ss_pred             CCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCC
Q 002736          781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFP  832 (886)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~  832 (886)
                      +.+.+      .++++ ...++|.+++++|+++.++.|..||.+.+=+....
T Consensus       267 ~t~~K------vv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  267 TTNYK------VVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             ccceE------EEEee-ecccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence            77653      34444 36789999999999999999999999988855443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=4.9e-27  Score=267.09  Aligned_cols=274  Identities=21%  Similarity=0.361  Sum_probs=237.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEE
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd  646 (886)
                      |...+.+..|.  +.++++++.+++|++|+......      ......+|.+.|.++++.. .+..+++|+.|.++++||
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~------i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL------ILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceE------EEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEe
Confidence            56677888888  56899999999999999876311      1122457999999999986 689999999999999999


Q ss_pred             CCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEE
Q 002736          647 VSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSL  725 (886)
Q Consensus       647 ~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l  725 (886)
                      +.++++...+.+|...|.+++..   +..+++|+.|.+|++|++.+       +..+..+. +.+.|+||..+   +.++
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n-------~~~l~l~~~h~~~V~~v~~~---~~~l  344 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTN-------GACLNLLRGHTGPVNCVQLD---EPLL  344 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccC-------cceEEEeccccccEEEEEec---CCEE
Confidence            99999999999999999999876   47889999999999999998       88888888 88999999998   5699


Q ss_pred             EEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeE
Q 002736          726 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF  805 (886)
Q Consensus       726 ~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~  805 (886)
                      ++|+.|++|.+||+++.+ ++.++.+|..+|.++.+.....+++|+.|++|++||+++..     +++.++.+|...+..
T Consensus       345 vsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~  418 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSS  418 (537)
T ss_pred             EEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCcccccc
Confidence            999999999999999888 59999999999999977533999999999999999999872     358999999999865


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          806 VGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       806 v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      +.+  .+++|++++.|++|++||...++.+..+...            |...|+++++.  .. .+++++.||++++|++
T Consensus       419 l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~------------~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  419 LLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR------------HVGGVSALALG--KE-EILCSSDDGSVKLWDL  481 (537)
T ss_pred             ccc--ccceeEeccccccEEEeecccCceeeeeccC------------CcccEEEeecC--cc-eEEEEecCCeeEEEec
Confidence            544  6789999999999999999999988765421            44669999887  44 8999999999999986

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.6e-26  Score=226.89  Aligned_cols=278  Identities=18%  Similarity=0.260  Sum_probs=228.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecC--CCcEEE
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNF--EGVVQV  644 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~--Dg~V~i  644 (886)
                      -...|.++.|+++|+++++++.|..|+|||......       ......++..|..++|... .+.++.++.  |.+|+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-------~~ti~skkyG~~~~~Fth~-~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKYGVDLACFTHH-SNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-------eeEeecccccccEEEEecC-CceEEEccCCCCCceEE
Confidence            477899999999999999999999999999876311       1122235567888899764 444444444  899999


Q ss_pred             EECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcE
Q 002736          645 WDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS  724 (886)
Q Consensus       645 Wd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  724 (886)
                      -++.+++.++-|.+|.+.|++++.+| -++.+++++.|++|++||++.       ..+...+..... ..++|+|. |-+
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~-------~~cqg~l~~~~~-pi~AfDp~-GLi  154 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRV-------KKCQGLLNLSGR-PIAAFDPE-GLI  154 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecC-------CCCceEEecCCC-cceeECCC-CcE
Confidence            99999999999999999999999999 569999999999999999998       566665554443 56799999 899


Q ss_pred             EEEEeCCCeEEEEecCCC-CcceEEEecC---CCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC
Q 002736          725 LAFGSADHRIYYYDLRNS-KIPLCTLIGH---NKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       725 l~~gs~Dg~I~vwDlr~~-~~~~~~~~~h---~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h  799 (886)
                      +|+|.....|++||+|.. +.|..++.-.   ....+.+.|+ +|++|+.+...+.+.+.|--.+      ..+.++.++
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------~~~~tfs~~  228 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG------TVKSTFSGY  228 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------cEeeeEeec
Confidence            999998889999999986 5567766543   6778999998 9999999999999999999887      357888888


Q ss_pred             CCce---eEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeC
Q 002736          800 TNVK---NFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANS  876 (886)
Q Consensus       800 ~~~v---~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~  876 (886)
                      .+.-   ....|+|++++|++|+.||+|.+|++.+++.+..+.-.            +.+.+.++.|+|... ++|+|++
T Consensus       229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~------------~~~~~~~~~fnP~~~-mf~sa~s  295 (311)
T KOG1446|consen  229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP------------NGGPVSCVRFNPRYA-MFVSASS  295 (311)
T ss_pred             cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC------------CCCCccccccCCcee-eeeecCc
Confidence            7654   56789999999999999999999999999888766421            456689999999987 7777754


Q ss_pred             CCCEEEE
Q 002736          877 SGNIKIL  883 (886)
Q Consensus       877 dg~I~iw  883 (886)
                        .+-+|
T Consensus       296 --~l~fw  300 (311)
T KOG1446|consen  296 --NLVFW  300 (311)
T ss_pred             --eEEEE
Confidence              56666

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7e-29  Score=279.26  Aligned_cols=249  Identities=13%  Similarity=0.151  Sum_probs=159.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+.+.+|++++.+++ ++.   ..+.+|++||| .|++|.+++.+. +.+++..++.++.||+.||+|||++||+|||||
T Consensus        54 il~~l~hp~iv~~~~-~~~---~~~~~~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlk  128 (377)
T cd05629          54 VLAESDSPWVVSLYY-SFQ---DAQYLYLIMEFLPGGDLMTMLIKY-DTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIK  128 (377)
T ss_pred             HHHhCCCCCcceEEE-EEE---cCCeeEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            345578999988777 333   35679999999 789999999654 578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+|++|||+++.+.........  .......... .+.   ..+.............             
T Consensus       129 p~NIll~~~~~~kl~DfGla~~~~~~~~~~~~--~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~-------------  189 (377)
T cd05629         129 PDNILIDRGGHIKLSDFGLSTGFHKQHDSAYY--QKLLQGKSNK-NRI---DNRNSVAVDSINLTMS-------------  189 (377)
T ss_pred             HHHEEECCCCCEEEeecccccccccccccccc--cccccccccc-ccc---cccccccccccccccc-------------
Confidence            99999999999999999999644221100000  0000000000 000   0000000000000000             


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                           ..         .++.+.+          ..........+||+.|+|||++.+..++.++|||||||+||||++  
T Consensus       190 -----~~---------~~~~~~~----------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~  245 (377)
T cd05629         190 -----SK---------DQIATWK----------KNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGW  245 (377)
T ss_pred             -----ch---------hhhhhhh----------hcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCC
Confidence                 00         0000000          000001112479999999999998889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhc--cCCCChhhhccChhhHHHHHHccCCCCCCC---CCHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLR--HRVLPPQLLLKFPKEASFCLWLLHPEPSGR---PKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~R---ps~~eil~h~~~~~~  328 (886)
                       ||..............  .....+.....++.+.+||.+||. +|.+|   +++.|+++||||...
T Consensus       246 ~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~  311 (377)
T cd05629         246 PPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGV  311 (377)
T ss_pred             CCCCCCCHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence             7755444332222221  111122223456788899999997 67665   699999999999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-29  Score=275.24  Aligned_cols=203  Identities=20%  Similarity=0.207  Sum_probs=170.1

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCc--ChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSV--DVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l--~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      -++..|+|+++++|.    ..+.+.|-|.||- .||+|..+|+..=+++  ++..+-.|.+||++||.|||.+.||||||
T Consensus       626 H~~LrHkNIVrYLGs----~senGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDI  701 (1226)
T KOG4279|consen  626 HSTLRHKNIVRYLGS----VSENGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDI  701 (1226)
T ss_pred             HHHHhhHhHHHHhhc----cCCCCeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccc
Confidence            355789999998882    2346788899998 9999999997766677  89999999999999999999999999999


Q ss_pred             CCcceeec-cCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          109 RPSCFVMS-SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       109 kP~NIll~-~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |-+|+|++ .+|.+||.|||.++.+..-                                                .+  
T Consensus       702 KGDNVLvNTySGvlKISDFGTsKRLAgi------------------------------------------------nP--  731 (1226)
T KOG4279|consen  702 KGDNVLVNTYSGVLKISDFGTSKRLAGI------------------------------------------------NP--  731 (1226)
T ss_pred             cCCcEEEeeccceEEecccccchhhccC------------------------------------------------Cc--
Confidence            99999997 8899999999998654110                                                00  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC--CCcccccchHHHHHHHH
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP--VSCASDIYRLGVLLFEL  265 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~--~s~~sDIwSlGvil~eL  265 (886)
                                                              .+.++.||..|||||++..++  |+.++|||||||++.||
T Consensus       732 ----------------------------------------~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEM  771 (1226)
T KOG4279|consen  732 ----------------------------------------CTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEM  771 (1226)
T ss_pred             ----------------------------------------cccccccchhhhChHhhccCCcCCCchhhhhhccceeEee
Confidence                                                    122358999999999998765  99999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhc-cCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLR-HRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      .|   ||..-....++|..+- ...-|+.+...+.+++.||.+|+.+||.+||+|.++|+.||++..
T Consensus       772 ATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  772 ATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDPFLQHN  838 (1226)
T ss_pred             ccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCcccccC
Confidence            99   7866656666665543 455577777778889999999999999999999999999999865

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=2.6e-29  Score=276.00  Aligned_cols=204  Identities=17%  Similarity=0.224  Sum_probs=160.1

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +...+.+.+|++++.+++ ++.   ..+.+|++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||++||+||
T Consensus        48 E~~~l~~l~h~niv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~  122 (318)
T cd05582          48 ERDILAEVNHPFIVKLHY-AFQ---TEGKLYLILDFLRGGDLFTRLSKE-VMFTEEDVKFYLAELALALDHLHSLGIIYR  122 (318)
T ss_pred             HHHHHHhCCCCCcccEEE-EEE---cCCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEecC
Confidence            334566778999988776 443   34678999999 789999999654 568999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++.++.+||+|||++........                                                 
T Consensus       123 dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~-------------------------------------------------  153 (318)
T cd05582         123 DLKPENILLDEEGHIKLTDFGLSKESIDHEK-------------------------------------------------  153 (318)
T ss_pred             CCCHHHeEECCCCcEEEeeccCCcccCCCCC-------------------------------------------------
Confidence            9999999999999999999999853311100                                                 


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ......||+.|+|||.+.+..++.++|||||||++|||+
T Consensus       154 -----------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~  192 (318)
T cd05582         154 -----------------------------------------KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEML  192 (318)
T ss_pred             -----------------------------------------ceecccCChhhcCHHHHcCCCCCCccceeccceEeeeec
Confidence                                                     011237899999999999888999999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCC
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEP  328 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~  328 (886)
                      +   ||.................  ..+....+.+.+|+.+||+.||.+||+     +.+++.||||...
T Consensus       193 tg~~p~~~~~~~~~~~~i~~~~~--~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~  260 (318)
T cd05582         193 TGSLPFQGKDRKETMTMILKAKL--GMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTI  260 (318)
T ss_pred             cCCCCCCCCCHHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCC
Confidence            9   7755443333322222221  122235577889999999999999999     6779999999864

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=1e-28  Score=272.04  Aligned_cols=200  Identities=18%  Similarity=0.211  Sum_probs=156.8

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++.++. ++.   ..+.++++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++||+||||||
T Consensus        50 l~~~~h~~Iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp  124 (325)
T cd05602          50 LKNVKHPFLVGLHF-SFQ---TADKLYFVLDYINGGELFYHLQRE-RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKP  124 (325)
T ss_pred             HHhCCCCCCCceeE-EEE---cCCeEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCH
Confidence            45568888888766 332   34678999999 788999999654 5688999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++.+||+|||+++.......                                                     
T Consensus       125 ~Nili~~~~~~kl~DfG~a~~~~~~~~-----------------------------------------------------  151 (325)
T cd05602         125 ENILLDSQGHIVLTDFGLCKENIEHNG-----------------------------------------------------  151 (325)
T ss_pred             HHeEECCCCCEEEccCCCCcccccCCC-----------------------------------------------------
Confidence            999999999999999999853211000                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           .....+||+.|+|||++.+..++.++|||||||++|||++   
T Consensus       152 -------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  194 (325)
T cd05602         152 -------------------------------------TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLP  194 (325)
T ss_pred             -------------------------------------CcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCC
Confidence                                                 0112378999999999999889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHH----HHhcCCCCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMG----ELLQSEFLNEP  328 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~----eil~h~~~~~~  328 (886)
                      ||....... .+..+..... .......+.+.+++.+||+.+|.+||++.    ++++|+||...
T Consensus       195 pf~~~~~~~-~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~  257 (325)
T cd05602         195 PFYSRNTAE-MYDNILNKPL-QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPI  257 (325)
T ss_pred             CCCCCCHHH-HHHHHHhCCc-CCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCCC
Confidence            776544333 3333332221 12234567888999999999999999875    89999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=1.5e-28  Score=272.51  Aligned_cols=195  Identities=17%  Similarity=0.231  Sum_probs=149.4

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC--------------------------------------
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK--------------------------------------   76 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~--------------------------------------   76 (886)
                      +|+|++.+++ +|..  ..+.++++||| .|++|.++|....                                      
T Consensus        69 ~h~niv~~~~-~~~~--~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (338)
T cd05102          69 NHLNVVNLLG-ACTK--PNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVL  145 (338)
T ss_pred             cCcceeeEEe-EecC--CCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCcc
Confidence            7888888776 5543  34568889999 8899999985421                                      


Q ss_pred             -----------------------CCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCC
Q 002736           77 -----------------------RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG  133 (886)
Q Consensus        77 -----------------------~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~  133 (886)
                                             ..+++.++..++.||+.||.|||++||+||||||+|||++.++.+|++|||+++...
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~  225 (338)
T cd05102         146 FSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIY  225 (338)
T ss_pred             ccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccc
Confidence                                   247788999999999999999999999999999999999999999999999986432


Q ss_pred             CCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCccccccccccc
Q 002736          134 SDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRV  213 (886)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  213 (886)
                      .....                                                                           
T Consensus       226 ~~~~~---------------------------------------------------------------------------  230 (338)
T cd05102         226 KDPDY---------------------------------------------------------------------------  230 (338)
T ss_pred             cCcch---------------------------------------------------------------------------
Confidence            11000                                                                           


Q ss_pred             ccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCCh
Q 002736          214 NVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPP  289 (886)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~  289 (886)
                                   .......++..|+|||++.+..++.++|||||||+||||++    ||............+.....+.
T Consensus       231 -------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~  297 (338)
T cd05102         231 -------------VRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMR  297 (338)
T ss_pred             -------------hcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCC
Confidence                         00001145677999999998889999999999999999985    6654433333334444433333


Q ss_pred             hhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          290 QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       290 ~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      .....++.+.+++.+||..||.+||++.|+++
T Consensus       298 ~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         298 APENATPEIYRIMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             CCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            34456678899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=4.2e-26  Score=259.36  Aligned_cols=271  Identities=13%  Similarity=0.229  Sum_probs=202.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCc------ccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEE
Q 002736          570 LVCSLSFDRDGELFAAAGVNKKIKVFECDAIINE------NRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       570 ~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~------~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~  643 (886)
                      .|.....++|+..+++++.+.....|+.......      ......+....+|.+.|.+++|+|.++++|++|+.||+|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            3444455566566666666666666664331100      0001112234579999999999997788999999999999


Q ss_pred             EEECCCc-------eEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEE
Q 002736          644 VWDVSRS-------QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCV  715 (886)
Q Consensus       644 iWd~~t~-------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v  715 (886)
                      |||+.++       ..+..+.+|...|.+++|+|...++|++|+.|++|+|||+++       +..+..+. +...|.++
T Consensus       102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-------g~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-------GKAVEVIKCHSDQITSL  174 (493)
T ss_pred             EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-------CeEEEEEcCCCCceEEE
Confidence            9999765       356778899999999999995567999999999999999998       55555665 45679999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCe-EEEEec-CCCEEEEEE----CCCcEEEEeCCCCCcccc
Q 002736          716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV-SYVKFV-DATTLVSAS----TDNTLKLWDLSMCTSRVI  789 (886)
Q Consensus       716 ~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V-~~v~f~-~~~~l~sgs----~Dg~i~lwd~~~~~~~~~  789 (886)
                      +|+|+ +.+|++|+.|++|++||+++++ ++..+.+|...+ ..+.|. ++..|++++    .|++|++||++...    
T Consensus       175 a~spd-G~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~----  248 (493)
T PTZ00421        175 EWNLD-GSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA----  248 (493)
T ss_pred             EEECC-CCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC----
Confidence            99999 8999999999999999999987 478888997654 456675 666777654    47999999998764    


Q ss_pred             CCCceEeecCC-CceeEEEEecCCCEEEEEc-CCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccC
Q 002736          790 DTPLHSFTGHT-NVKNFVGLSVWDGYVATGS-ETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQ  866 (886)
Q Consensus       790 ~~~~~~~~~h~-~~v~~v~~sp~g~~lasgs-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~  866 (886)
                       .++.....+. ..+....|++++.+|++|+ .|+.|++||+..++++....+.+..            ++.++||.|.
T Consensus       249 -~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~------------~~~g~~~~pk  314 (493)
T PTZ00421        249 -SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE------------PHKGLCMMPK  314 (493)
T ss_pred             -CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC------------CCcceEeccc
Confidence             3455444333 4566678999999988887 5999999999998877766554333            3556666664

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=6.4e-29  Score=280.61  Aligned_cols=209  Identities=15%  Similarity=0.169  Sum_probs=157.1

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      +...+...+|++++..+. ++.   ....++++||+.+++|.+++.. ...+++.+++.|+.||+.||.|||++||||||
T Consensus       136 E~~il~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~l~~~l~~-~~~l~~~~~~~i~~ql~~aL~~LH~~givHrD  210 (392)
T PHA03207        136 EIDILKTISHRAIINLIH-AYR---WKSTVCMVMPKYKCDLFTYVDR-SGPLPLEQAITIQRRLLEALAYLHGRGIIHRD  210 (392)
T ss_pred             HHHHHHhcCCCCccceee-eEe---eCCEEEEEehhcCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCccccC
Confidence            344566678999988776 333   3467899999988999999943 36789999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++..+.++|+|||++.........                                                 
T Consensus       211 lkp~Nill~~~~~~~l~DfG~a~~~~~~~~~-------------------------------------------------  241 (392)
T PHA03207        211 VKTENIFLDEPENAVLGDFGAACKLDAHPDT-------------------------------------------------  241 (392)
T ss_pred             CCHHHEEEcCCCCEEEccCccccccCccccc-------------------------------------------------
Confidence            9999999999999999999998543211000                                                 


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             .......||+.|+|||++.+..|+.++|||||||+||||++
T Consensus       242 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~  282 (392)
T PHA03207        242 ---------------------------------------PQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSV  282 (392)
T ss_pred             ---------------------------------------ccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHH
Confidence                                                   00112378999999999998889999999999999999998


Q ss_pred             ---CCCCCchhh--HHhHhh--------------------------ccCCCC----hh-h--hccChhhHHHHHHccCCC
Q 002736          268 ---PFSTGEEKT--RTMSSL--------------------------RHRVLP----PQ-L--LLKFPKEASFCLWLLHPE  309 (886)
Q Consensus       268 ---pf~~~~~~~--~~~~~~--------------------------~~~~~~----~~-~--~~~~~~~~~li~~~L~~d  309 (886)
                         ||+......  ..+..+                          .....+    +. +  .....++.+||.+||..|
T Consensus       283 g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~d  362 (392)
T PHA03207        283 KNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFD  362 (392)
T ss_pred             CCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccC
Confidence               775543211  000000                          000000    00 0  112345678999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCCc
Q 002736          310 PSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       310 P~~Rps~~eil~h~~~~~~~  329 (886)
                      |.+||++.|+|.||||...+
T Consensus       363 p~~Rpsa~e~l~~p~f~~~~  382 (392)
T PHA03207        363 QEFRPSAQDILSLPLFTKEP  382 (392)
T ss_pred             hhhCCCHHHHhhCchhhccc
Confidence            99999999999999998643

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.95  E-value=6.2e-29  Score=277.43  Aligned_cols=205  Identities=20%  Similarity=0.230  Sum_probs=153.2

Q ss_pred             ceeecccccccCCCCCCccccccc---cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ...+...+|++++..++ ++....   ....++++|||.+++|.+++..   .+++..+..++.||+.||.|||++||+|
T Consensus        67 ~~~l~~l~h~niv~~~~-~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~givH  142 (355)
T cd07874          67 LVLMKCVNHKNIISLLN-VFTPQKSLEEFQDVYLVMELMDANLCQVIQM---ELDHERMSYLLYQMLCGIKHLHSAGIIH  142 (355)
T ss_pred             HHHHHHhCCCchhceee-eeeccccccccceeEEEhhhhcccHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            34455678999988776 443322   2345799999988899888843   4789999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||++.++.+||+|||+++..+...                                                 
T Consensus       143 rDikp~Nill~~~~~~kl~Dfg~~~~~~~~~-------------------------------------------------  173 (355)
T cd07874         143 RDLKPSNIVVKSDCTLKILDFGLARTAGTSF-------------------------------------------------  173 (355)
T ss_pred             CCCChHHEEECCCCCEEEeeCcccccCCCcc-------------------------------------------------
Confidence            9999999999999999999999985432110                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                ......||+.|+|||.+.+..++.++|||||||++|||
T Consensus       174 ------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el  211 (355)
T cd07874         174 ------------------------------------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM  211 (355)
T ss_pred             ------------------------------------------ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHH
Confidence                                                      00112679999999999998899999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhcc----------------------C------CCChh------------hhccChhhHHHH
Q 002736          266 FC---PFSTGEEKTRTMSSLRH----------------------R------VLPPQ------------LLLKFPKEASFC  302 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~----------------------~------~~~~~------------~~~~~~~~~~li  302 (886)
                      ++   ||............+..                      .      ..+..            .......+.+||
T Consensus       212 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  291 (355)
T cd07874         212 VRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLL  291 (355)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHH
Confidence            99   67544322111110000                      0      00000            001124567999


Q ss_pred             HHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          303 LWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       303 ~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      .+||..||.+|||+.|+|+||||...
T Consensus       292 ~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         292 SKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             HHHhcCCchhcCCHHHHhcCcchhcc
Confidence            99999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.95  E-value=1.3e-28  Score=270.80  Aligned_cols=200  Identities=18%  Similarity=0.233  Sum_probs=156.1

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++.++. .+.   ..+.++++||| .|++|..++.+. ..+++.++..++.||+.||.|||++||+||||||
T Consensus        50 l~~~~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp  124 (321)
T cd05603          50 LKNLKHPFLVGLHY-SFQ---TAEKLYFVLDYVNGGELFFHLQRE-RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKP  124 (321)
T ss_pred             HHhCCCCCccceee-EEE---cCCEEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCH
Confidence            45568888888765 333   34678999999 788999988543 5689999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||||+.++.+||+|||+++.......                                                     
T Consensus       125 ~NIll~~~~~~kl~Dfg~~~~~~~~~~-----------------------------------------------------  151 (321)
T cd05603         125 ENILLDSQGHVVLTDFGLCKEGVEPEE-----------------------------------------------------  151 (321)
T ss_pred             HHeEECCCCCEEEccCCCCccCCCCCC-----------------------------------------------------
Confidence            999999999999999999853211000                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           .....+||+.|+|||.+.+..++.++|||||||++|||++   
T Consensus       152 -------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  194 (321)
T cd05603         152 -------------------------------------TTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLP  194 (321)
T ss_pred             -------------------------------------ccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCC
Confidence                                                 0112378999999999998889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH----HHHhcCCCCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM----GELLQSEFLNEP  328 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~----~eil~h~~~~~~  328 (886)
                      ||...... .....+..... ..+......+.+++.+||+.+|.+||++    .++++|+||...
T Consensus       195 pf~~~~~~-~~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~  257 (321)
T cd05603         195 PFYSRDVS-QMYDNILHKPL-QLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPI  257 (321)
T ss_pred             CCCCCCHH-HHHHHHhcCCC-CCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCCC
Confidence            77655433 23333332221 2223455678899999999999999875    599999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.95  E-value=1e-28  Score=272.68  Aligned_cols=202  Identities=18%  Similarity=0.187  Sum_probs=155.1

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhccc-Ceeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ-GIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~-giiHrD  107 (886)
                      ..+...+|++++.+++ ++.+   .+.++++||| .|++|.+++.+. ..+++..+..++.||+.||.|||++ +|+|||
T Consensus        55 ~~l~~l~h~~iv~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~d  129 (331)
T cd06649          55 QVLHECNSPYIVGFYG-AFYS---DGEISICMEHMDGGSLDQVLKEA-KRIPEEILGKVSIAVLRGLAYLREKHQIMHRD  129 (331)
T ss_pred             HHHHHCCCCCCCeEEE-EEEE---CCEEEEEeecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCC
Confidence            3455678999988877 4433   4568899999 788999999654 4689999999999999999999986 699999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++.+||+|||++......                                                    
T Consensus       130 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------------------------------------  157 (331)
T cd06649         130 VKPSNILVNSRGEIKLCDFGVSGQLIDS----------------------------------------------------  157 (331)
T ss_pred             CChhhEEEcCCCcEEEccCccccccccc----------------------------------------------------
Confidence            9999999999999999999998533110                                                    


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......||+.|+|||.+.+..++.++|||||||++|||++
T Consensus       158 ----------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~t  197 (331)
T cd06649         158 ----------------------------------------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAI  197 (331)
T ss_pred             ----------------------------------------ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHh
Confidence                                                    0011267899999999998889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhc----------------------------------------------cCCCChh-hhccChh
Q 002736          268 ---PFSTGEEKTRTMSSLR----------------------------------------------HRVLPPQ-LLLKFPK  297 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~----------------------------------------------~~~~~~~-~~~~~~~  297 (886)
                         ||....... ....+.                                              ....+.. .....++
T Consensus       198 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
T cd06649         198 GRYPIPPPDAKE-LEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPD  276 (331)
T ss_pred             CCCCCCCCCHHH-HHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHH
Confidence               774432211 111110                                              0001111 1123567


Q ss_pred             hHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          298 EASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       298 ~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      +.+|+.+||.+||++|||+.|+++||||....
T Consensus       277 l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  308 (331)
T cd06649         277 FQEFVNKCLIKNPAERADLKMLMNHTFIKRSE  308 (331)
T ss_pred             HHHHHHHHccCCcccCCCHHHHhcChHHhhcc
Confidence            88999999999999999999999999998643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.95  E-value=6.9e-29  Score=279.28  Aligned_cols=245  Identities=13%  Similarity=0.176  Sum_probs=161.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.++. .+.   ..+.+|++||| .|++|.++|.+. +.+++..++.++.||+.||+|||++||+|||||
T Consensus        54 il~~l~h~~iv~~~~-~~~---~~~~~~lv~E~~~~g~L~~~i~~~-~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlk  128 (376)
T cd05598          54 ILAEADNEWVVKLYY-SFQ---DKDNLYFVMDYIPGGDMMSLLIRL-GIFEEDLARFYIAELTCAIESVHKMGFIHRDIK  128 (376)
T ss_pred             HHHhCCCCCcceEEE-EEE---cCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC
Confidence            445568888888776 333   35689999999 789999999654 568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+||+|||++..+........+...                   .....+...+.....   ....+.  
T Consensus       129 p~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~---~~~~~~--  184 (376)
T cd05598         129 PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKG-------------------DHHRQDSMEPSEEWS---EIDRCR--  184 (376)
T ss_pred             HHHEEECCCCCEEEEeCCCCccccccccccccccc-------------------ccccccccccccccc---cccccc--
Confidence            99999999999999999998654321100000000                   000000000000000   000000  


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                        .     ...................+||+.|+|||++.+..++.++|||||||+||||++  
T Consensus       185 ------------------~-----~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~  241 (376)
T cd05598         185 ------------------L-----KPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQ  241 (376)
T ss_pred             ------------------c-----cchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCC
Confidence                              0     000000000000001123589999999999999889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhcc--CCCChhhhccChhhHHHHHHccCCCCCCCC---CHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRH--RVLPPQLLLKFPKEASFCLWLLHPEPSGRP---KMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp---s~~eil~h~~~~~~  328 (886)
                       ||...............  ....+.....++.+.++|.+|+ .+|.+|+   ++.++++||||...
T Consensus       242 ~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~  307 (376)
T cd05598         242 PPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGI  307 (376)
T ss_pred             CCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCC
Confidence             77655543332222221  1112223345678889999976 5999999   99999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.95  E-value=1.2e-28  Score=265.55  Aligned_cols=204  Identities=17%  Similarity=0.177  Sum_probs=154.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      .+...+|++++...+ ++.   ..+.++++||| .|++|.+++..   ....+++..++.++.||+.||.|||++||+||
T Consensus        46 il~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~  121 (280)
T cd05608          46 ILAKVHSRFIVSLAY-AFQ---TKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYR  121 (280)
T ss_pred             HHHhCCCCcEeeeeE-EEc---CCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccC
Confidence            344557777777555 333   23568899998 78999887732   34568999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++.++.+|++|||++........                                                 
T Consensus       122 dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~-------------------------------------------------  152 (280)
T cd05608         122 DLKPENVLLDNDGNVRISDLGLAVELKDGQS-------------------------------------------------  152 (280)
T ss_pred             CCCHHHEEECCCCCEEEeeCccceecCCCCc-------------------------------------------------
Confidence            9999999999999999999999854321100                                                 


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ......||+.|+|||.+.+..++.++|||||||++|||+
T Consensus       153 -----------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~  191 (280)
T cd05608         153 -----------------------------------------KTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMI  191 (280)
T ss_pred             -----------------------------------------cccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHH
Confidence                                                     001126789999999999999999999999999999999


Q ss_pred             c---CCCCCchhhH---HhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCCc
Q 002736          267 C---PFSTGEEKTR---TMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       267 ~---pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~~  329 (886)
                      +   ||........   ....+... ........++.+.+++.+||+.||.+||     +++++++||||+...
T Consensus       192 ~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~~  264 (280)
T cd05608         192 AARGPFRARGEKVENKELKQRILND-SVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLN  264 (280)
T ss_pred             hCCCCCCCCCcchhHHHHHHhhccc-CCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcCC
Confidence            9   7754332211   11111111 1112234567788999999999999999     889999999998743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.95  E-value=1e-28  Score=270.14  Aligned_cols=206  Identities=14%  Similarity=0.201  Sum_probs=155.5

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++..++ ++.   ..+.++++|||.+++|.+++......+++.+++.++.||+.||.|||++||+|||||
T Consensus        56 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlk  131 (309)
T cd07872          56 SLLKDLKHANIVTLHD-IVH---TDKSLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLK  131 (309)
T ss_pred             HHHHhCCCCCcceEEE-EEe---eCCeEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            3445567888888777 443   346789999998889999997665668999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+|++|||++........                                                    
T Consensus       132 p~Nill~~~~~~kl~Dfg~~~~~~~~~~----------------------------------------------------  159 (309)
T cd07872         132 PQNLLINERGELKLADFGLARAKSVPTK----------------------------------------------------  159 (309)
T ss_pred             HHHEEECCCCCEEECccccceecCCCcc----------------------------------------------------
Confidence            9999999999999999999853211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ......++++|+|||.+.+ ..++.++|||||||++|||++ 
T Consensus       160 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg  201 (309)
T cd07872         160 --------------------------------------TYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASG  201 (309)
T ss_pred             --------------------------------------ccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                  0001256889999999876 458999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhc--cCC------------------CC--------hhhhccChhhHHHHHHccCCCCCCCCCHH
Q 002736          268 --PFSTGEEKTRTMSSLR--HRV------------------LP--------PQLLLKFPKEASFCLWLLHPEPSGRPKMG  317 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~--~~~------------------~~--------~~~~~~~~~~~~li~~~L~~dP~~Rps~~  317 (886)
                        ||..............  ...                  .+        ......++++.+|+.+||..||.+|||+.
T Consensus       202 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~  281 (309)
T cd07872         202 RPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAE  281 (309)
T ss_pred             CCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHH
Confidence              6644432221111110  000                  00        01122456778999999999999999999


Q ss_pred             HHhcCCCCCCCc
Q 002736          318 ELLQSEFLNEPR  329 (886)
Q Consensus       318 eil~h~~~~~~~  329 (886)
                      |+++||||....
T Consensus       282 e~l~h~~~~~~~  293 (309)
T cd07872         282 EAMKHAYFRSLG  293 (309)
T ss_pred             HHhcChhhhhcc
Confidence            999999998753

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8e-28  Score=243.34  Aligned_cols=281  Identities=17%  Similarity=0.267  Sum_probs=231.1

Q ss_pred             CcccCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCC
Q 002736          562 GDLLNSSNLVCSLSFDRDG-ELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEG  640 (886)
Q Consensus       562 ~~~~~h~~~V~sl~f~~d~-~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg  640 (886)
                      +.+.+|...|.|++=+|.. ..+|+|+.||.|+|||+...       .......+|.+.|..|++..   +.+++++.|.
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDK  129 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-------ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDK  129 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-------hhhheeecccCceeeEEecc---cceEEecCCc
Confidence            5567899999999999976 78999999999999999863       22334457889999999975   6788888999


Q ss_pred             cEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecC-CCeEEEEEeC
Q 002736          641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTK-ANVCCVQFPL  719 (886)
Q Consensus       641 ~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp  719 (886)
                      +|+.|.+.. .+..++-+ ...+..|+-+. ..+.++||+.  .|.|||...       ..++..+... ..|.|+.|+|
T Consensus       130 tvK~wk~~~-~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R-------~~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  130 TVKQWKIDG-PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQR-------DNPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             ceeeeeccC-Ccceeeec-ccccccccccc-ccccccccCc--eeeeccccc-------CCccceeecCCCceeEEecCC
Confidence            999999865 35555543 45677888775 6789999985  599999987       6777777765 4599999999


Q ss_pred             CCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeec
Q 002736          720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTG  798 (886)
Q Consensus       720 ~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~  798 (886)
                      ....+|++|..|+.|.+||+|... |+....- ...-+.|+|. ..-.+++|+.|..+..||.+...     .|+..+.+
T Consensus       198 vETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~d  270 (433)
T KOG0268|consen  198 VETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKD  270 (433)
T ss_pred             CcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccccceeeccccccceehhhhhhc-----ccchhhcc
Confidence            988899999999999999999987 4544321 2345789996 66788999999999999999875     78999999


Q ss_pred             CCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCC
Q 002736          799 HTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSG  878 (886)
Q Consensus       799 h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg  878 (886)
                      |.+.|.+|+|||.|+-+++||.|.+|+||.+..+..--.+..            .--+.|.||.||-|+. ++++|++|+
T Consensus       271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------kRMq~V~~Vk~S~Dsk-yi~SGSdd~  337 (433)
T KOG0268|consen  271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------KRMQHVFCVKYSMDSK-YIISGSDDG  337 (433)
T ss_pred             cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH------------hhhheeeEEEEecccc-EEEecCCCc
Confidence            999999999999999999999999999999876543322221            1134599999999999 999999999


Q ss_pred             CEEEEE
Q 002736          879 NIKILE  884 (886)
Q Consensus       879 ~I~iw~  884 (886)
                      +|++|.
T Consensus       338 nvRlWk  343 (433)
T KOG0268|consen  338 NVRLWK  343 (433)
T ss_pred             ceeeee
Confidence            999996

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=5.5e-29  Score=249.39  Aligned_cols=207  Identities=15%  Similarity=0.189  Sum_probs=158.0

Q ss_pred             ccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcc
Q 002736           34 HGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSC  112 (886)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~N  112 (886)
                      +..|+|++.+.. +.+   +...||++||- .||+|...|.++ ..+++.++..+.++|+.||+|||.+||+||||||+|
T Consensus       132 Cqgh~nilqLie-fFE---dd~~FYLVfEKm~GGplLshI~~~-~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPEN  206 (463)
T KOG0607|consen  132 CQGHKNILQLIE-FFE---DDTRFYLVFEKMRGGPLLSHIQKR-KHFNEREASRVVKDIASALDFLHTKGIAHRDLKPEN  206 (463)
T ss_pred             hcCCccHHHHHH-Hhc---ccceEEEEEecccCchHHHHHHHh-hhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccc
Confidence            478999877666 333   45789999998 999999999665 678999999999999999999999999999999999


Q ss_pred             eeeccCCc---eeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          113 FVMSSFNH---VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       113 Ill~~~~~---vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      ||-...++   |||+||.+.+......                                 +..++..             
T Consensus       207 iLC~~pn~vsPvKiCDfDLgSg~k~~~---------------------------------~~spast-------------  240 (463)
T KOG0607|consen  207 ILCESPNKVSPVKICDFDLGSGIKLNN---------------------------------DCSPAST-------------  240 (463)
T ss_pred             eeecCCCCcCceeeeccccccccccCC---------------------------------CCCCCCC-------------
Confidence            99987665   8999998875432110                                 0000000             


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---C--CCCCcccccchHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---G--APVSCASDIYRLGVLLFE  264 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~--~~~s~~sDIwSlGvil~e  264 (886)
                                                           ....+.+|+..|||||++.   +  ..|+.++|.||||||||-
T Consensus       241 -------------------------------------P~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYI  283 (463)
T KOG0607|consen  241 -------------------------------------PELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYI  283 (463)
T ss_pred             -------------------------------------ccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHH
Confidence                                                 0223458999999999874   2  348999999999999999


Q ss_pred             Hhc---CCCCCc----------h----hhHHhHhhccC---CCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCC
Q 002736          265 LFC---PFSTGE----------E----KTRTMSSLRHR---VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEF  324 (886)
Q Consensus       265 Ll~---pf~~~~----------~----~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~  324 (886)
                      ||+   ||.+.-          .    .......+.++   +....|...+.++++++..+|..||.+|.++.++++|||
T Consensus       284 mLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw  363 (463)
T KOG0607|consen  284 MLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPW  363 (463)
T ss_pred             HHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCcc
Confidence            999   664321          1    11122333333   334567778888999999999999999999999999999


Q ss_pred             CCCC
Q 002736          325 LNEP  328 (886)
Q Consensus       325 ~~~~  328 (886)
                      ++..
T Consensus       364 ~~~~  367 (463)
T KOG0607|consen  364 VQRC  367 (463)
T ss_pred             cccc
Confidence            9864

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=3.5e-30  Score=299.36  Aligned_cols=211  Identities=19%  Similarity=0.211  Sum_probs=179.7

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      .++-++...+|+|.+.+||    -|+.-+..+|.||| .||+|.+.+ +.++..++...+.|..|++.||.|||++||||
T Consensus      1283 eEm~vlE~lnHpNlV~YyG----VEvHRekv~IFMEyC~~GsLa~ll-~~gri~dE~vt~vyt~qll~gla~LH~~gIVH 1357 (1509)
T KOG4645|consen 1283 EEMKVLEGLNHPNLVRYYG----VEVHREKVYIFMEYCEGGSLASLL-EHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVH 1357 (1509)
T ss_pred             HHHHHHHhccCccccccCc----eeecHHHHHHHHHHhccCcHHHHH-HhcchhhhhHHHHHHHHHHHHHHHHHhcCcee
Confidence            4555667789999999998    56667778899999 899999988 44577899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+||+|+.+|.+||.|||.|..+...                                                  
T Consensus      1358 RDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~-------------------------------------------------- 1387 (1509)
T KOG4645|consen 1358 RDIKPANILLDFNGLIKYGDFGSAVKIKNN-------------------------------------------------- 1387 (1509)
T ss_pred             cCCCccceeeecCCcEEeecccceeEecCc--------------------------------------------------
Confidence            999999999999999999999999544211                                                  


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC---CCcccccchHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP---VSCASDIYRLGVLL  262 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~---~s~~sDIwSlGvil  262 (886)
                                                          .+.+|......+||+.|||||++.+..   -.-+.|||||||+.
T Consensus      1388 ------------------------------------~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVV 1431 (1509)
T KOG4645|consen 1388 ------------------------------------AQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVV 1431 (1509)
T ss_pred             ------------------------------------hhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceE
Confidence                                                011122233459999999999998754   46699999999999


Q ss_pred             HHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          263 FELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       263 ~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      .||+|   |+.......+.|..+..+-.|+.+...+++..+||..||..||+.|.++.|++.|-|-+..
T Consensus      1432 lEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~ 1500 (1509)
T KOG4645|consen 1432 LEMATGKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEHAFGKSC 1500 (1509)
T ss_pred             EEeecCCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHhhccccc
Confidence            99999   8888888888999888888888888888999999999999999999999999999887653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=5.5e-28  Score=240.17  Aligned_cols=272  Identities=17%  Similarity=0.248  Sum_probs=232.2

Q ss_pred             cccccccceEEeeecCceEEEEecc---CcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEE
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQ---GDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE  613 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~---~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~  613 (886)
                      ++|+.||.+.+|+|.+++....|+.   ..+.-|..+|.|+.|++|.+.+|+|+.||+||||.+.++..-.      ...
T Consensus       229 vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR------rFd  302 (508)
T KOG0275|consen  229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR------RFD  302 (508)
T ss_pred             eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH------Hhh
Confidence            6788999999999999999988873   5577899999999999999999999999999999998753322      223


Q ss_pred             ecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchh
Q 002736          614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA  693 (886)
Q Consensus       614 ~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~  693 (886)
                      .+|...|+|+.|+. ++..++|+++|-+|+|.-+.+|+++.+|++|..-|+...|.+ +|+.+++++.||+|++|+..+.
T Consensus       303 rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  303 RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             hhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcch
Confidence            46899999999998 788999999999999999999999999999999999999997 9999999999999999999995


Q ss_pred             hhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecC----CCCeEEEEecCCCEEEE
Q 002736          694 ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH----NKTVSYVKFVDATTLVS  769 (886)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h----~~~V~~v~f~~~~~l~s  769 (886)
                      ....++..    ......|++|-.-|.+...++++...++|++.++.. + .+.+|..-    ..-|.++--+.|+++..
T Consensus       381 eC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Q-vVrsfsSGkREgGdFi~~~lSpkGewiYc  454 (508)
T KOG0275|consen  381 ECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-Q-VVRSFSSGKREGGDFINAILSPKGEWIYC  454 (508)
T ss_pred             hhhhhccC----CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-e-EEeeeccCCccCCceEEEEecCCCcEEEE
Confidence            44333221    123567999999998899999999999999999863 3 36665432    23355555459999999


Q ss_pred             EECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEe
Q 002736          770 ASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       770 gs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd  828 (886)
                      .+.|+.+..|.+.++      ...+++.-|..-+..++-+|..+.||+-++||.+++|.
T Consensus       455 igED~vlYCF~~~sG------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  455 IGEDGVLYCFSVLSG------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EccCcEEEEEEeecC------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999988      45788889999999999999999999999999999994

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.95  E-value=1.1e-28  Score=277.08  Aligned_cols=209  Identities=18%  Similarity=0.217  Sum_probs=155.6

Q ss_pred             ceeecccccccCCCCCCccccccc--cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEA--AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ...+...+|+|++..++ ++..+.  ....+|++|||.+++|.+++... ..+++.+++.++.||+.||.|||++||+||
T Consensus        50 ~~~l~~l~h~niv~~~~-~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~  127 (372)
T cd07853          50 LKMLCFFKHDNVLSALD-ILQPPHIDPFEEIYVVTELMQSDLHKIIVSP-QPLSSDHVKVFLYQILRGLKYLHSAGILHR  127 (372)
T ss_pred             HHHHHhCCCCCcCCHhh-eecCCCccccceEEEEeeccccCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeCC
Confidence            34455668899888777 554332  12268999999888999988554 578999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++.++.+||+|||++........                                                 
T Consensus       128 dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~-------------------------------------------------  158 (372)
T cd07853         128 DIKPGNLLVNSNCVLKICDFGLARVEEPDES-------------------------------------------------  158 (372)
T ss_pred             CCChHHEEECCCCCEEeccccceeecccCcc-------------------------------------------------
Confidence            9999999999999999999999853311100                                                 


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFEL  265 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eL  265 (886)
                                                              ......+++++|+|||.+.+.. ++.++|||||||++|||
T Consensus       159 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el  198 (372)
T cd07853         159 ----------------------------------------KHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAEL  198 (372)
T ss_pred             ----------------------------------------ccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHH
Confidence                                                    0001126789999999998754 89999999999999999


Q ss_pred             hc---CCCCCchhhHHhHh----------------------h-ccCCCChh-------hhccChhhHHHHHHccCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSS----------------------L-RHRVLPPQ-------LLLKFPKEASFCLWLLHPEPSG  312 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~----------------------~-~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~  312 (886)
                      ++   ||............                      + .....++.       .....+++.+||.+||+.||.+
T Consensus       199 ~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~  278 (372)
T cd07853         199 LGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDK  278 (372)
T ss_pred             HcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhh
Confidence            99   66444322111100                      0 00111111       1123566789999999999999


Q ss_pred             CCCHHHHhcCCCCCCC
Q 002736          313 RPKMGELLQSEFLNEP  328 (886)
Q Consensus       313 Rps~~eil~h~~~~~~  328 (886)
                      |||+.|+|+||||...
T Consensus       279 R~t~~e~l~hp~~~~~  294 (372)
T cd07853         279 RISAADALAHPYLDEG  294 (372)
T ss_pred             CcCHHHHhcCHhhCCC
Confidence            9999999999999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.95  E-value=9.6e-29  Score=276.30  Aligned_cols=236  Identities=14%  Similarity=0.179  Sum_probs=158.8

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++..++ .+.   ..+.++++||| .|++|.+++.+. +.+++..++.++.||+.||+|||++||+||||||
T Consensus        55 l~~l~~~~iv~~~~-~~~---~~~~~~lv~E~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp  129 (360)
T cd05627          55 LVEADGAWVVKMFY-SFQ---DKRNLYLIMEFLPGGDMMTLLMKK-DTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKP  129 (360)
T ss_pred             HHhCCCCCEeeEEE-EEE---cCCEEEEEEeCCCCccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCH
Confidence            44567888888776 332   34678999999 789999999654 5789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++++||+|||++............      .....             ....++.....              
T Consensus       130 ~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~------~~~~~-------------~~~~~~~~~~~--------------  176 (360)
T cd05627         130 DNLLLDAKGHVKLSDFGLCTGLKKAHRTEFY------RNLTH-------------NPPSDFSFQNM--------------  176 (360)
T ss_pred             HHEEECCCCCEEEeeccCCcccccccccccc------ccccc-------------CCccccccccc--------------
Confidence            9999999999999999998754322100000      00000             00000000000              


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                           .... ................+||+.|+|||++.+..++.++|||||||++|||++   
T Consensus       177 ---------------------~~~~-~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~  234 (360)
T cd05627         177 ---------------------NSKR-KAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP  234 (360)
T ss_pred             ---------------------cccc-ccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCC
Confidence                                 0000 000000000011123589999999999999889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhc--cCCCChhhhccChhhHHHHHHccCCCCCCCC---CHHHHhcCCCCCCC
Q 002736          268 PFSTGEEKTRTMSSLR--HRVLPPQLLLKFPKEASFCLWLLHPEPSGRP---KMGELLQSEFLNEP  328 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp---s~~eil~h~~~~~~  328 (886)
                      ||............+.  .....+.....++.+.+||.+|+. +|.+|+   ++.++++||||...
T Consensus       235 Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~~~  299 (360)
T cd05627         235 PFCSETPQETYRKVMNWKETLVFPPEVPISEKAKDLILRFCT-DSENRIGSNGVEEIKSHPFFEGV  299 (360)
T ss_pred             CCCCCCHHHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcCCCCCCC
Confidence            7765544333322222  111112222356788899999874 999997   48999999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=4.3e-29  Score=251.55  Aligned_cols=213  Identities=18%  Similarity=0.221  Sum_probs=165.8

Q ss_pred             CcccccccCceeecccccccCCCCCCccc--cccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHh
Q 002736           20 DFELRKHSDGVELTHGDHLRNQGGLSGVC--ENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYA   97 (886)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~   97 (886)
                      .+..|..++...+.+.+|+|+++++.-+.  ....+...+|++||+...+|.+.+.   ..++-..+..|+.|++.|+.|
T Consensus        57 ~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~~nl~~vi~---~elDH~tis~i~yq~~~~ik~  133 (369)
T KOG0665|consen   57 THAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMDANLCQVIL---MELDHETISYILYQMLCGIKH  133 (369)
T ss_pred             ccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhhhHHHHHHH---HhcchHHHHHHHHHHHHHHHH
Confidence            44568889999999999999999888322  2333456689999999999999885   346888999999999999999


Q ss_pred             hcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCC
Q 002736           98 AHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus        98 lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  177 (886)
                      ||+.||+||||||+||++..+..+|+.|||+++..+.+                                          
T Consensus       134 lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~------------------------------------------  171 (369)
T KOG0665|consen  134 LHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD------------------------------------------  171 (369)
T ss_pred             HHhcceeecccCcccceecchhheeeccchhhcccCcc------------------------------------------
Confidence            99999999999999999999999999999999533211                                          


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccch
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwS  257 (886)
                                                                       +..+.++.|.+|+|||++.+..|...+||||
T Consensus       172 -------------------------------------------------~~mtpyVvtRyyrapevil~~~~ke~vdiwS  202 (369)
T KOG0665|consen  172 -------------------------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWS  202 (369)
T ss_pred             -------------------------------------------------cccCchhheeeccCchheeccCCcccchhhh
Confidence                                                             1345568999999999999988999999999


Q ss_pred             HHHHHHHHhc--CCCCCchhhHHh---------------Hhhcc------------------CCCC-----hhhh---cc
Q 002736          258 LGVLLFELFC--PFSTGEEKTRTM---------------SSLRH------------------RVLP-----PQLL---LK  294 (886)
Q Consensus       258 lGvil~eLl~--pf~~~~~~~~~~---------------~~~~~------------------~~~~-----~~~~---~~  294 (886)
                      +|||+.||+.  -++.+..+...+               ..+..                  ..+|     ....   ..
T Consensus       203 vGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~  282 (369)
T KOG0665|consen  203 VGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLD  282 (369)
T ss_pred             hhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccc
Confidence            9999999998  223343332222               11100                  0011     1111   11


Q ss_pred             ChhhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          295 FPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       295 ~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                      ...+.+++.+||..+|++|.+++++|+|||++
T Consensus       283 ~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  283 CSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             hHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence            22356999999999999999999999999997

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.3e-27  Score=241.29  Aligned_cols=269  Identities=16%  Similarity=0.239  Sum_probs=219.9

Q ss_pred             ccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEec
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .+++..|.+.-+|....-.. -+|+ ..+.+|..+|.-+.|+||.+++++||.+..+++||..++...+.      +..+
T Consensus       239 LAsaSkD~Taiiw~v~~d~~-~kl~-~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~------y~~~  310 (519)
T KOG0293|consen  239 LASASKDSTAIIWIVVYDVH-FKLK-KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL------YPSG  310 (519)
T ss_pred             EeeccCCceEEEEEEecCcc-eeee-eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh------cccC
Confidence            46677888999997654222 1221 23478999999999999999999999999999999987533221      1223


Q ss_pred             CCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEeccc-CCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhh
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH-ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI  694 (886)
Q Consensus       616 ~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h-~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~  694 (886)
                      +...+++++|+| ++..+++|+.|+++..||+... .....++- ...|++++..+ |+.++++.+.|..|++++..+  
T Consensus       311 ~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~--  385 (519)
T KOG0293|consen  311 LGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA--  385 (519)
T ss_pred             cCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh--
Confidence            457899999999 7899999999999999998643 34444432 25699999998 999999999999999999988  


Q ss_pred             hhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeE--EEEec--CCCEEEEE
Q 002736          695 LLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS--YVKFV--DATTLVSA  770 (886)
Q Consensus       695 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~--~v~f~--~~~~l~sg  770 (886)
                           ......+.....|++.+.+.+ ++++++.-.+..|++||+...+. +..+.||+..-.  .-+|-  +...++||
T Consensus       386 -----~~dr~lise~~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCFgg~~~~fiaSG  458 (519)
T KOG0293|consen  386 -----RVDRGLISEEQPITSFSISKD-GKLALVNLQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCFGGGNDKFIASG  458 (519)
T ss_pred             -----hhhhccccccCceeEEEEcCC-CcEEEEEcccCeeEEeecchhhH-HHHhhcccccceEEEeccCCCCcceEEec
Confidence                 455556667788999999999 89999999999999999997764 777888886533  33453  77899999


Q ss_pred             ECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCC-EEEEEcCCCcEEEEecC
Q 002736          771 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG-YVATGSETNEVFVYHKA  830 (886)
Q Consensus       771 s~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~-~lasgs~Dg~v~iwd~~  830 (886)
                      |.|+.|+||+..++      .++.++.||...|++|+|+|... .+|++|.||+|+||-..
T Consensus       459 SED~kvyIWhr~sg------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  459 SEDSKVYIWHRISG------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCCceEEEEEccCC------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            99999999999988      67999999999999999999876 89999999999999754

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.2e-29  Score=268.64  Aligned_cols=204  Identities=17%  Similarity=0.130  Sum_probs=163.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .|-...|||.|.+-+ ++.   .....++|||||-||-.++|.-...++.+.++..|+.+.+.||.||||.+.||||||.
T Consensus        79 FL~~l~HPntieYkg-CyL---re~TaWLVMEYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKA  154 (948)
T KOG0577|consen   79 FLRQLRHPNTIEYKG-CYL---REHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKA  154 (948)
T ss_pred             HHHhccCCCcccccc-eee---ccchHHHHHHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccc
Confidence            455678999988666 332   3355678999998888888865556799999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      .||||+..|.||++|||.+......                                                       
T Consensus       155 GNILLse~g~VKLaDFGSAsi~~PA-------------------------------------------------------  179 (948)
T KOG0577|consen  155 GNILLSEPGLVKLADFGSASIMAPA-------------------------------------------------------  179 (948)
T ss_pred             cceEecCCCeeeeccccchhhcCch-------------------------------------------------------
Confidence            9999999999999999998543211                                                       


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC---CCCCcccccchHHHHHHHHhc
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG---APVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~---~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ..++|||+|||||+|..   +.|+-++||||||+++.||.-
T Consensus       180 ---------------------------------------nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAE  220 (948)
T KOG0577|consen  180 ---------------------------------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE  220 (948)
T ss_pred             ---------------------------------------hcccCCccccchhHheeccccccCCccceeeccchhhhhhh
Confidence                                                   12499999999999864   569999999999999999998


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhh-hccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCchH
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQL-LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSME  333 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~~  333 (886)
                         |+|..+...+.+.+-... .|... ...+..+..|+..||.+-|.+|||.+++|.|+|+...+.+..
T Consensus       221 RkPPlFnMNAMSALYHIAQNe-sPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~fv~R~Rp~tv  289 (948)
T KOG0577|consen  221 RKPPLFNMNAMSALYHIAQNE-SPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELLKHRFVLRERPPTV  289 (948)
T ss_pred             cCCCccCchHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHhhcchhccCCCchH
Confidence               777666655554443332 22222 223456779999999999999999999999999987766544

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.95  E-value=2.6e-28  Score=269.59  Aligned_cols=204  Identities=17%  Similarity=0.220  Sum_probs=155.4

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +....|++++..+. ++.   ..+.++++||| .|++|.++|.+....+++..++.++.||+.||+|||++||+||||||
T Consensus        55 l~~~~~~~i~~~~~-~~~---~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp  130 (332)
T cd05623          55 LVNGDNQWITTLHY-AFQ---DENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKP  130 (332)
T ss_pred             HhhCCCCCEeeEEE-EEe---cCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCH
Confidence            34457777776655 333   34678999998 78999999976556789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++.+||+|||++........                                                     
T Consensus       131 ~Nili~~~~~~kL~DfG~a~~~~~~~~-----------------------------------------------------  157 (332)
T cd05623         131 DNILMDMNGHIRLADFGSCLKLMEDGT-----------------------------------------------------  157 (332)
T ss_pred             HHEEECCCCCEEEeecchheecccCCc-----------------------------------------------------
Confidence            999999999999999999853311100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----CCCCCcccccchHHHHHHHH
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~s~~sDIwSlGvil~eL  265 (886)
                                                          ......+||+.|+|||++.     ...++.++|||||||+||||
T Consensus       158 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~el  201 (332)
T cd05623         158 ------------------------------------VQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEM  201 (332)
T ss_pred             ------------------------------------ceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHH
Confidence                                                0011237899999999986     24589999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccC---CCChhhhccChhhHHHHHHccCCCCCC--CCCHHHHhcCCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHR---VLPPQLLLKFPKEASFCLWLLHPEPSG--RPKMGELLQSEFLNEP  328 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~--Rps~~eil~h~~~~~~  328 (886)
                      ++   ||................   .+|......++.+.+|+.+||..+|..  |+++.|+++||||...
T Consensus       202 l~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~  272 (332)
T cd05623         202 LYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGI  272 (332)
T ss_pred             hcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCC
Confidence            99   776554433333332221   233344456788899999999765544  6899999999999864

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-25  Score=257.96  Aligned_cols=321  Identities=17%  Similarity=0.230  Sum_probs=215.4

Q ss_pred             eeecCceEEEEeccCcccCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEe
Q 002736          548 LSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDG-ELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN  626 (886)
Q Consensus       548 w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~-~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~  626 (886)
                      |+.. |..++.|     ..|+..|..++.++.. .+|+|||.||+||||++....................+.+.++...
T Consensus      1034 W~p~-G~lVAhL-----~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNPR-GILVAHL-----HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCcc-ceEeehh-----hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence            6643 4555555     5688888888888755 9999999999999999987544432223333333477888999888


Q ss_pred             CCCCCeEEEecCCCcEEEEECCCce-------EEEEeccc-CCcEEEE-EEccCCCC-EEEEEeCCCcEEEEeCchhhhh
Q 002736          627 SYIKSQIASSNFEGVVQVWDVSRSQ-------VLTEMREH-ERRVWSI-DFSSADPT-LLASGSDDGSVKLWSINQAILL  696 (886)
Q Consensus       627 ~~~~~~las~s~Dg~V~iWd~~t~~-------~~~~~~~h-~~~v~~v-~~~p~~~~-~l~sgs~Dg~v~lwd~~~~~~~  696 (886)
                      + .++.+|.|+.||.|++.++....       +.+..+.+ .+.+.++ .|.-.... .|+.+..-+.|..||+++.   
T Consensus      1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~--- 1183 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR--- 1183 (1431)
T ss_pred             c-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh---
Confidence            7 68899999999999999987621       12222222 2333333 33322344 7888899999999999983   


Q ss_pred             hccCceeeeee---cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEE-ecCCCCeEEEEec--C--CCEEE
Q 002736          697 LHLGVSIGTIK---TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL-IGHNKTVSYVKFV--D--ATTLV  768 (886)
Q Consensus       697 ~~~~~~~~~~~---~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~-~~h~~~V~~v~f~--~--~~~l~  768 (886)
                          ...+.++   .++.|++++.+|. ++++++|+..|.+.+||+|-.. ++..+ .++..++..|..+  .  ....+
T Consensus      1184 ----~~~w~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1184 ----HDAWRLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             ----hhHHhhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCc-eeecccCcccCCcceEEeeccCCCCceEE
Confidence                3333333   3577999999999 8999999999999999999766 45544 3566777777663  2  24555


Q ss_pred             EEE--CCCcEEEEeCCCCCcccc-----CCCceEee--------cCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCC
Q 002736          769 SAS--TDNTLKLWDLSMCTSRVI-----DTPLHSFT--------GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPM  833 (886)
Q Consensus       769 sgs--~Dg~i~lwd~~~~~~~~~-----~~~~~~~~--------~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~  833 (886)
                      +++  ..+.|.+|+..++.+...     ..+..+..        .+.-.....++..-+.++.+|+.|..|+.||...++
T Consensus      1258 s~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             EecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            544  478899999998765211     11111110        122223445555567799999999999999998765


Q ss_pred             cce--------eeccC---------CCCCC------------------------CCC--ccccCCCcEEEEEEccCCCcE
Q 002736          834 PAL--------SFNFN---------HADPL------------------------SGP--ETDDAAQFISSVCWRGQSSNT  870 (886)
Q Consensus       834 ~~~--------~~~~~---------~~~~~------------------------~~~--~~~~~~~~V~~v~~s~~~~~~  870 (886)
                      ...        .+...         +..+.                        ++.  -...|...|.++++-.....+
T Consensus      1338 ~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~l 1417 (1431)
T KOG1240|consen 1338 ISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPL 1417 (1431)
T ss_pred             cccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccE
Confidence            440        00000         00000                        000  114577889999887666558


Q ss_pred             EEEEeCCCCEEEEE
Q 002736          871 LVAANSSGNIKILE  884 (886)
Q Consensus       871 l~s~~~dg~I~iw~  884 (886)
                      |++++.||.|+||.
T Consensus      1418 lvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1418 LVSSSRDGVIKIWK 1431 (1431)
T ss_pred             EEEecCCCeeeecC
Confidence            99999999999995

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=1.4e-28  Score=265.65  Aligned_cols=201  Identities=17%  Similarity=0.226  Sum_probs=153.0

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+...+|++++..++ +..   ....+++++||.+++|.+++.+....+++..++.++.||+.||.|||++||+||||||
T Consensus        52 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~  127 (284)
T cd07839          52 LLKELKHKNIVRLYD-VLH---SDKKLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKP  127 (284)
T ss_pred             HHHhcCCCCeeeHHH-Hhc---cCCceEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCH
Confidence            444567888877666 333   3467899999988899999866556789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.+|++|||++...+....                                                     
T Consensus       128 ~nil~~~~~~~~l~dfg~~~~~~~~~~-----------------------------------------------------  154 (284)
T cd07839         128 QNLLINKNGELKLADFGLARAFGIPVR-----------------------------------------------------  154 (284)
T ss_pred             HHEEEcCCCcEEECccchhhccCCCCC-----------------------------------------------------
Confidence            999999999999999999854321100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ......++++|+|||.+.+.. ++.++|||||||++|||++  
T Consensus       155 -------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~  197 (284)
T cd07839         155 -------------------------------------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG  197 (284)
T ss_pred             -------------------------------------CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcC
Confidence                                                 000125688899999987754 7999999999999999997  


Q ss_pred             -CCCCCchhhHHhHhhccC-------------------CCC---------hhhhccChhhHHHHHHccCCCCCCCCCHHH
Q 002736          268 -PFSTGEEKTRTMSSLRHR-------------------VLP---------PQLLLKFPKEASFCLWLLHPEPSGRPKMGE  318 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~-------------------~~~---------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  318 (886)
                       ||+...........+...                   ..+         +.....++.+.+|+.+||..||.+|||+.+
T Consensus       198 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~  277 (284)
T cd07839         198 RPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEE  277 (284)
T ss_pred             CCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHH
Confidence             765544332222211100                   000         011224567789999999999999999999


Q ss_pred             HhcCCCC
Q 002736          319 LLQSEFL  325 (886)
Q Consensus       319 il~h~~~  325 (886)
                      ++.||||
T Consensus       278 il~h~~f  284 (284)
T cd07839         278 ALQHPYF  284 (284)
T ss_pred             HhcCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.95  E-value=2.1e-28  Score=268.70  Aligned_cols=208  Identities=16%  Similarity=0.173  Sum_probs=148.0

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcC--------CCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDK--------PKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~--------~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      ...+...+|++++.+++ ++.. .....++++|||.+++|.+++..        ....+++..++.++.||+.||.|||+
T Consensus        49 ~~~l~~l~h~niv~~~~-~~~~-~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~  126 (317)
T cd07867          49 IALLRELKHPNVIALQK-VFLS-HSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA  126 (317)
T ss_pred             HHHHHhCCCCCeeeEEE-EEec-cCCCeEEEEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence            34455567888888766 4433 23457899999988899888742        12357899999999999999999999


Q ss_pred             cCeeecccCCcceee----ccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccC
Q 002736          101 QGIVVHNVRPSCFVM----SSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTA  176 (886)
Q Consensus       101 ~giiHrDlkP~NIll----~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  176 (886)
                      +||+||||||+|||+    +..+.+||+|||+++.........                                     
T Consensus       127 ~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~-------------------------------------  169 (317)
T cd07867         127 NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL-------------------------------------  169 (317)
T ss_pred             CCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccc-------------------------------------
Confidence            999999999999999    456789999999996542210000                                     


Q ss_pred             CCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCccccc
Q 002736          177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDI  255 (886)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDI  255 (886)
                                                                        .......||+.|+|||.+.+. .++.++||
T Consensus       170 --------------------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di  199 (317)
T cd07867         170 --------------------------------------------------ADLDPVVVTFWYRAPELLLGARHYTKAIDI  199 (317)
T ss_pred             --------------------------------------------------cccCcceecccccCcHHhcCCCccCcHHHH
Confidence                                                              001123679999999999774 48999999


Q ss_pred             chHHHHHHHHhc---CCCCCchhhH---------H--h------------Hhhcc-------------CCCC--------
Q 002736          256 YRLGVLLFELFC---PFSTGEEKTR---------T--M------------SSLRH-------------RVLP--------  288 (886)
Q Consensus       256 wSlGvil~eLl~---pf~~~~~~~~---------~--~------------~~~~~-------------~~~~--------  288 (886)
                      |||||++|||++   ||........         .  +            ..+..             ....        
T Consensus       200 wSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (317)
T cd07867         200 WAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYM  279 (317)
T ss_pred             HhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhh
Confidence            999999999999   6643221100         0  0            00000             0000        


Q ss_pred             -hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          289 -PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       289 -~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                       .........+.+|+.+||..||.+|||+.|+|+||||
T Consensus       280 ~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         280 EKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             hcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence             0000112346689999999999999999999999997

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.95  E-value=3e-28  Score=272.74  Aligned_cols=202  Identities=15%  Similarity=0.196  Sum_probs=153.7

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++..++ ++.   ..+.++++||| .|++|.+++..  ..+++..++.++.||+.||.|||++||+||||||
T Consensus        97 ~~~~~hp~iv~~~~-~~~---~~~~~~lv~Ey~~gg~L~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp  170 (371)
T cd05622          97 MAFANSPWVVQLFY-AFQ---DDRYLYMVMEYMPGGDLVNLMSN--YDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKP  170 (371)
T ss_pred             HHhCCCCCCCeEEE-EEE---cCCEEEEEEcCCCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCH
Confidence            44467888888776 333   34678999999 68999999954  3589999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++++||+|||++........                                                     
T Consensus       171 ~NIll~~~~~ikL~DfG~a~~~~~~~~-----------------------------------------------------  197 (371)
T cd05622         171 DNMLLDKSGHLKLADFGTCMKMNKEGM-----------------------------------------------------  197 (371)
T ss_pred             HHEEECCCCCEEEEeCCceeEcCcCCc-----------------------------------------------------
Confidence            999999999999999999854321100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC----CCcccccchHHHHHHHHh
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP----VSCASDIYRLGVLLFELF  266 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~----~s~~sDIwSlGvil~eLl  266 (886)
                                                          ......+||+.|+|||++.+..    ++.++|||||||+||||+
T Consensus       198 ------------------------------------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell  241 (371)
T cd05622         198 ------------------------------------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML  241 (371)
T ss_pred             ------------------------------------ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHH
Confidence                                                0001237899999999997543    789999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccC--CCChhhhccChhhHHHHHHccCCCCCC--CCCHHHHhcCCCCCCC
Q 002736          267 C---PFSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEASFCLWLLHPEPSG--RPKMGELLQSEFLNEP  328 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~--Rps~~eil~h~~~~~~  328 (886)
                      +   ||............+...  ...+.....++.+.++|.+||..+|.+  |+++.++++|+||...
T Consensus       242 ~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~  310 (371)
T cd05622         242 VGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND  310 (371)
T ss_pred             hCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCC
Confidence            9   776554433333222221  112333346678889999999844433  7899999999999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.5e-28  Score=260.39  Aligned_cols=203  Identities=18%  Similarity=0.181  Sum_probs=159.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+.+.+|++++..++ ++.+   .+.+++++|| .|++|.+++.+. ..+++..++.++.||+.||.|||+.||+|||||
T Consensus        57 ~l~~l~~~~i~~~~~-~~~~---~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~  131 (263)
T cd06625          57 LLKNLQHERIVQYYG-CLRD---DETLSIFMEYMPGGSVKDQLKAY-GALTETVTRKYTRQILEGVEYLHSNMIVHRDIK  131 (263)
T ss_pred             HHHhCCCCCeeeeEE-EEcc---CCeEEEEEEECCCCcHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            455678999888777 4443   3478899999 789999999654 468999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++|+|||+++.........                                                  
T Consensus       132 p~nilv~~~~~~~l~dfg~~~~~~~~~~~~--------------------------------------------------  161 (263)
T cd06625         132 GANILRDSAGNVKLGDFGASKRLQTICSSG--------------------------------------------------  161 (263)
T ss_pred             HHHEEEcCCCCEEEeecccceecccccccc--------------------------------------------------
Confidence            999999999999999999985432110000                                                  


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           .......|+.+|+|||.+.+..++.++|||||||++|||++  
T Consensus       162 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~  204 (263)
T cd06625         162 -------------------------------------TGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEK  204 (263)
T ss_pred             -------------------------------------ccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCC
Confidence                                                 00011257889999999999889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                       ||...+..............+.........+.+++.+||..+|.+||++.++++|+||
T Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         205 PPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             CCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence             7765544444333333333333344556788899999999999999999999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.5e-28  Score=267.54  Aligned_cols=211  Identities=17%  Similarity=0.247  Sum_probs=157.4

Q ss_pred             cccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhccc
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      |++|...  +...+|++++.+++ ++.   ..+.+|++||| .|++|.+++.+....+++..++.++.||+.||+|||++
T Consensus        48 ~~~e~~~--l~~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  121 (331)
T cd05597          48 FREERDV--LVNGDRRWITNLHY-AFQ---DENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQL  121 (331)
T ss_pred             HHHHHHH--HHhCCCCCCCceEE-EEe---cCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3444433  33457777777666 343   34678999999 79999999976556789999999999999999999999


Q ss_pred             CeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcc
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++.+||+|||++.........                                           
T Consensus       122 ~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------------  158 (331)
T cd05597         122 GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTV-------------------------------------------  158 (331)
T ss_pred             CeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCc-------------------------------------------
Confidence            9999999999999999999999999998543211000                                           


Q ss_pred             ccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-----CCCCcccccc
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-----APVSCASDIY  256 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-----~~~s~~sDIw  256 (886)
                                                                    .....+||+.|+|||++.+     ..++.++|||
T Consensus       159 ----------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diw  192 (331)
T cd05597         159 ----------------------------------------------QSNVAVGTPDYISPEILQAMEDGKGRYGPECDWW  192 (331)
T ss_pred             ----------------------------------------------cccceeccccccCHHHHhhccccccCCCCcceee
Confidence                                                          0111368999999999873     3478899999


Q ss_pred             hHHHHHHHHhc---CCCCCchhhHHhHhhccC---CCChhhhccChhhHHHHHHccCCCCCC--CCCHHHHhcCCCCCCC
Q 002736          257 RLGVLLFELFC---PFSTGEEKTRTMSSLRHR---VLPPQLLLKFPKEASFCLWLLHPEPSG--RPKMGELLQSEFLNEP  328 (886)
Q Consensus       257 SlGvil~eLl~---pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~--Rps~~eil~h~~~~~~  328 (886)
                      ||||++|||++   ||............+...   ..++.....++.+.+|+.+||..++..  |+++.++++||||...
T Consensus       193 slG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~  272 (331)
T cd05597         193 SLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGI  272 (331)
T ss_pred             hhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCC
Confidence            99999999999   776554333322222221   223333345678889999988764443  7899999999999864

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PHA02988 hypothetical protein; Provisional

Probab=99.95  E-value=2e-28  Score=264.00  Aligned_cols=198  Identities=17%  Similarity=0.111  Sum_probs=155.8

Q ss_pred             ceeecccccccCCCCCCcccccc-ccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENE-AAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVV  105 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiH  105 (886)
                      ...+...+|+|++.+++ ++.+. .....++++||| .|++|.++|.+. ..+++.....++.||+.||.|||+ .|++|
T Consensus        69 ~~~l~~l~h~nIv~~~g-~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~H  146 (283)
T PHA02988         69 IKNLRRIDSNNILKIYG-FIIDIVDDLPRLSLILEYCTRGYLREVLDKE-KDLSFKTKLDMAIDCCKGLYNLYKYTNKPY  146 (283)
T ss_pred             HHHHHhcCCCCEEEEee-eEEecccCCCceEEEEEeCCCCcHHHHHhhC-CCCChhHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            34555668888888877 55432 234568899999 889999999664 578999999999999999999998 59999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||++.++.+|++|||+++......                                                 
T Consensus       147 rdlkp~nill~~~~~~kl~dfg~~~~~~~~~-------------------------------------------------  177 (283)
T PHA02988        147 KNLTSVSFLVTENYKLKIICHGLEKILSSPP-------------------------------------------------  177 (283)
T ss_pred             CcCChhhEEECCCCcEEEcccchHhhhcccc-------------------------------------------------
Confidence            9999999999999999999999985331110                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC--CCCCcccccchHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG--APVSCASDIYRLGVLLF  263 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~--~~~s~~sDIwSlGvil~  263 (886)
                                                                  ...+|+..|+|||.+.+  ..++.++|||||||++|
T Consensus       178 --------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~  213 (283)
T PHA02988        178 --------------------------------------------FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLW  213 (283)
T ss_pred             --------------------------------------------ccccCcccccCHHHhhhccccccchhhhhHHHHHHH
Confidence                                                        01167888999999976  56999999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ||++   ||............+.....++.....++.+.+|+.+||+.||.+|||+.|+++
T Consensus       214 el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        214 EIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILY  274 (283)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence            9999   886655444333333333333333456788999999999999999999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.8e-26  Score=251.22  Aligned_cols=276  Identities=21%  Similarity=0.323  Sum_probs=230.2

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccc-eEEecCCCCeee-EEEeCCCCCeEEEecCCCc
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYP-VVEMASRSKLSS-ICWNSYIKSQIASSNFEGV  641 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~-~~~~~~~~~I~~-l~~~~~~~~~las~s~Dg~  641 (886)
                      +.+|+..|+.+++.+. ..++++|.||++++|+-...      .... .....+.+-|.+ +++.+.++..+++|+.|++
T Consensus        10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGK------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eccCccchheeEecCC-eEEeecCCCCceeeeeccCc------ccccceecccCcceeeccceeccccCcceEeecccce
Confidence            4689999999998865 48899999999999986431      1111 122346666666 8887756778999999999


Q ss_pred             EEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCC
Q 002736          642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDS  721 (886)
Q Consensus       642 V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  721 (886)
                      |.+|...+..+...+++|...|.|++... ++. ++|||-|.++++|-+....       . ....|.+.|..|..-|. 
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~-------~-~l~gH~asVWAv~~l~e-  151 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV-------Y-SLQGHTASVWAVASLPE-  151 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecchhhh-------c-ccCCcchheeeeeecCC-
Confidence            99999999999999999999999999874 555 9999999999999886521       1 13456788999999998 


Q ss_pred             CcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCC
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN  801 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~  801 (886)
                      . .+++||+|.+|++|.-  ++ .+.+|.||.+.|..+++.+...|+|++.||.|++|++. +      ..+..+.||++
T Consensus       152 ~-~~vTgsaDKtIklWk~--~~-~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g------e~l~~~~ghtn  220 (745)
T KOG0301|consen  152 N-TYVTGSADKTIKLWKG--GT-LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G------EVLLEMHGHTN  220 (745)
T ss_pred             C-cEEeccCcceeeeccC--Cc-hhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C------ceeeeeeccce
Confidence            3 8999999999999975  33 48899999999999999988899999999999999994 3      45899999999


Q ss_pred             ceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEE
Q 002736          802 VKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIK  881 (886)
Q Consensus       802 ~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~  881 (886)
                      -|.++....+++.|+|+++|++++||+..  +..+.+...             ...|+++++-++|+  +++|++||.|+
T Consensus       221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-------------ttsiWsa~~L~NgD--Ivvg~SDG~Vr  283 (745)
T KOG0301|consen  221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-------------TTSIWSAKVLLNGD--IVVGGSDGRVR  283 (745)
T ss_pred             EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-------------ccceEEEEEeeCCC--EEEeccCceEE
Confidence            99999999999999999999999999987  455444432             23499999999999  99999999999


Q ss_pred             EEEe
Q 002736          882 ILEM  885 (886)
Q Consensus       882 iw~l  885 (886)
                      ||..
T Consensus       284 VfT~  287 (745)
T KOG0301|consen  284 VFTV  287 (745)
T ss_pred             EEEe
Confidence            9963

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-27  Score=261.28  Aligned_cols=288  Identities=22%  Similarity=0.348  Sum_probs=228.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECC
Q 002736          569 NLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS  648 (886)
Q Consensus       569 ~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~  648 (886)
                      ....+|..+++-..++.+|. ..++||.+........-.+.......-...+..|.|+....++||+++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            34556777898888888887 57888887653222111111000111223466799998889999999999999999998


Q ss_pred             C---ceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCCCcE
Q 002736          649 R---SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDSGRS  724 (886)
Q Consensus       649 t---~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~  724 (886)
                      .   .+.+..|.+|+..|++++|++..+++|++||.||+||+||++.       .....++.. ...|..|+|+|..++.
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-------~~S~~t~~~nSESiRDV~fsp~~~~~  191 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-------KKSKSTFRSNSESIRDVKFSPGYGNK  191 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-------ccccccccccchhhhceeeccCCCce
Confidence            7   5667789999999999999999999999999999999999998       444444443 4569999999998999


Q ss_pred             EEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCce
Q 002736          725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK  803 (886)
Q Consensus       725 l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v  803 (886)
                      |+++...|.+.+||+|..+.+...+.+|.++|.++.|+ ++.+|||||.|+.|+|||......    .++.++. ...++
T Consensus       192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tIn-Tiapv  266 (839)
T KOG0269|consen  192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTIN-TIAPV  266 (839)
T ss_pred             EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEEe-eccee
Confidence            99999999999999999998889999999999999997 999999999999999999987643    4455543 34689


Q ss_pred             eEEEEecCCC-EEEEEcC--CCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCE
Q 002736          804 NFVGLSVWDG-YVATGSE--TNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNI  880 (886)
Q Consensus       804 ~~v~~sp~g~-~lasgs~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I  880 (886)
                      ..|.|-|... .||+++.  |-.|+|||+..+-..            -..+..|...|+.++|.......|.+++-||+|
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP------------~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP------------YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeecccccc------------ceeeeccCccccceeccCCCceeeEeecCccHH
Confidence            9999999976 5777764  889999999875322            134466788899999976444378899999986


Q ss_pred             E
Q 002736          881 K  881 (886)
Q Consensus       881 ~  881 (886)
                      .
T Consensus       335 ~  335 (839)
T KOG0269|consen  335 L  335 (839)
T ss_pred             H
Confidence            4

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.2e-25  Score=256.52  Aligned_cols=249  Identities=15%  Similarity=0.188  Sum_probs=189.3

Q ss_pred             EeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCce--------EEEEec
Q 002736          586 AGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ--------VLTEMR  657 (886)
Q Consensus       586 ~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~--------~~~~~~  657 (886)
                      ||.++.|++|+....       .......+|...|.+++|+|..+++||||+.||+|+|||+.++.        ++..+.
T Consensus        50 GG~~gvI~L~~~~r~-------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             CCceeEEEeeecCCC-------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            677899999987642       11123346889999999999768999999999999999997642        345678


Q ss_pred             ccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 002736          658 EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYY  737 (886)
Q Consensus       658 ~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vw  737 (886)
                      +|...|++++|+|....+|++|+.|++|+|||+++       +..+..+.+...|.+++|+|+ |.+|++++.|+.|++|
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-------g~~~~~i~~~~~V~Slswspd-G~lLat~s~D~~IrIw  194 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-------EKRAFQINMPKKLSSLKWNIK-GNLLSGTCVGKHMHII  194 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC-------CcEEEEEecCCcEEEEEECCC-CCEEEEEecCCEEEEE
Confidence            89999999999994344678999999999999998       555556666778999999999 8999999999999999


Q ss_pred             ecCCCCcceEEEecCCCCeEEE-----Eec-CCCEEEEEECCC----cEEEEeCCCCCccccCCCceEeec--CCCceeE
Q 002736          738 DLRNSKIPLCTLIGHNKTVSYV-----KFV-DATTLVSASTDN----TLKLWDLSMCTSRVIDTPLHSFTG--HTNVKNF  805 (886)
Q Consensus       738 Dlr~~~~~~~~~~~h~~~V~~v-----~f~-~~~~l~sgs~Dg----~i~lwd~~~~~~~~~~~~~~~~~~--h~~~v~~  805 (886)
                      |++++.. +..+.+|...+...     .|+ ++.+|+|++.|+    +|+|||++...     .++..+..  +.+.+..
T Consensus       195 D~Rsg~~-i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----~pl~~~~ld~~~~~L~p  268 (568)
T PTZ00420        195 DPRKQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----SALVTMSIDNASAPLIP  268 (568)
T ss_pred             ECCCCcE-EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----CceEEEEecCCccceEE
Confidence            9999874 78899998765433     233 778899988774    79999999643     45555433  3333333


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCC
Q 002736          806 VGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQS  867 (886)
Q Consensus       806 v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~  867 (886)
                      ....++|.++++|+.|++|++|++..+. +..+.          + ..+..++.+++|.|+.
T Consensus       269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~----------~-~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        269 HYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN----------E-YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec----------c-cccCCCccceEEcccc
Confidence            3344558899999999999999997653 21111          1 1134567788888863

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.6e-26  Score=225.93  Aligned_cols=275  Identities=16%  Similarity=0.263  Sum_probs=220.0

Q ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEE
Q 002736          567 SSNLVCSLSFDR-DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVW  645 (886)
Q Consensus       567 h~~~V~sl~f~~-d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iW  645 (886)
                      ..+.|.+|+|+| ...++++++.|++||+|+++..     ....+.....|.++|.+++|+. +++.+++|+.|+.+++|
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-----g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-----GQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecC-----CcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEE
Confidence            467899999999 5567779999999999999762     1122334456899999999997 78999999999999999


Q ss_pred             ECCCceEEEEecccCCcEEEEEEccCCCC--EEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCc
Q 002736          646 DVSRSQVLTEMREHERRVWSIDFSSADPT--LLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGR  723 (886)
Q Consensus       646 d~~t~~~~~~~~~h~~~v~~v~~~p~~~~--~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  723 (886)
                      |+.+++. ..+..|.++|.++.|-+ ...  .|++||-|.+|+.||.++       ..++.++..+..+.++..-   ..
T Consensus       100 DL~S~Q~-~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~-------~~pv~t~~LPeRvYa~Dv~---~p  167 (347)
T KOG0647|consen  100 DLASGQV-SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRS-------SNPVATLQLPERVYAADVL---YP  167 (347)
T ss_pred             EccCCCe-eeeeecccceeEEEEec-CCCcceeEecccccceeecccCC-------CCeeeeeeccceeeehhcc---Cc
Confidence            9999965 45678999999999986 444  899999999999999999       8888999999999988875   34


Q ss_pred             EEEEEeCCCeEEEEecCCCCcceEEEe-cCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCC
Q 002736          724 SLAFGSADHRIYYYDLRNSKIPLCTLI-GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN  801 (886)
Q Consensus       724 ~l~~gs~Dg~I~vwDlr~~~~~~~~~~-~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~  801 (886)
                      +++++.++..|.+|+|+++........ .-+-.+.||+.. +.+..+.||..|.+-+..+..+..    .--.+|+.|..
T Consensus       168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~----~~nFtFkCHR~  243 (347)
T KOG0647|consen  168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP----KDNFTFKCHRS  243 (347)
T ss_pred             eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc----cCceeEEEecc
Confidence            788899999999999987643222211 122346777765 777779999999999999987532    22456777763


Q ss_pred             ---------ceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEE
Q 002736          802 ---------VKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLV  872 (886)
Q Consensus       802 ---------~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~  872 (886)
                               .|++|+|+|.-..|+|.|.||++.+||......+.+.             ..|.++|.+++|+.+|. ++|
T Consensus       244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-------------~~~~qpItcc~fn~~G~-ifa  309 (347)
T KOG0647|consen  244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-------------ETHPQPITCCSFNRNGS-IFA  309 (347)
T ss_pred             CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-------------CcCCCccceeEecCCCC-EEE
Confidence                     4789999999999999999999999999887666432             34678899999999999 665


Q ss_pred             -EEeCC
Q 002736          873 -AANSS  877 (886)
Q Consensus       873 -s~~~d  877 (886)
                       +.+.|
T Consensus       310 YA~gYD  315 (347)
T KOG0647|consen  310 YALGYD  315 (347)
T ss_pred             EEeecc
Confidence             44444

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.95  E-value=3.2e-28  Score=271.34  Aligned_cols=201  Identities=21%  Similarity=0.215  Sum_probs=150.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++.+++ ++.   ..+.++++||| .+++|...     ...++..+..|++||+.||.|||++||+||||
T Consensus       124 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDl  194 (353)
T PLN00034        124 EILRDVNHPNVVKCHD-MFD---HNGEIQVLLEFMDGGSLEGT-----HIADEQFLADVARQILSGIAYLHRRHIVHRDI  194 (353)
T ss_pred             HHHHhCCCCCcceeee-Eec---cCCeEEEEEecCCCCccccc-----ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCC
Confidence            3445567899888776 443   34678899999 77887653     23567888999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+||+|||+++.......                                                   
T Consensus       195 kp~NIll~~~~~~kL~DfG~~~~~~~~~~---------------------------------------------------  223 (353)
T PLN00034        195 KPSNLLINSAKNVKIADFGVSRILAQTMD---------------------------------------------------  223 (353)
T ss_pred             CHHHEEEcCCCCEEEcccccceecccccc---------------------------------------------------
Confidence            99999999999999999999854321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-----CCCCcccccchHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-----APVSCASDIYRLGVLLF  263 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-----~~~s~~sDIwSlGvil~  263 (886)
                                                             .....+||..|+|||.+..     ..++.++|||||||++|
T Consensus       224 ---------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~  264 (353)
T PLN00034        224 ---------------------------------------PCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSIL  264 (353)
T ss_pred             ---------------------------------------cccccccCccccCccccccccccCcCCCcchhHHHHHHHHH
Confidence                                                   0011278999999998853     22467999999999999


Q ss_pred             HHhc---CCCCCch--hhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          264 ELFC---PFSTGEE--KTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       264 eLl~---pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      ||++   ||.....  ....+..+.....+.......+++.+||.+||..||++||++.|+++||||....
T Consensus       265 el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~~  335 (353)
T PLN00034        265 EFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQHPFILRAQ  335 (353)
T ss_pred             HHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcCcccccCC
Confidence            9998   7753221  1222222222223333445667889999999999999999999999999998754

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.95  E-value=3.8e-28  Score=261.26  Aligned_cols=205  Identities=16%  Similarity=0.192  Sum_probs=155.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|++++..+. .+.   ....++++||| .|++|.+++... ...+++..+..++.||+.||.|||++||+|||
T Consensus        45 ~il~~l~hp~i~~~~~-~~~---~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~d  120 (277)
T cd05607          45 EILEKVNSPFIVNLAY-AFE---SKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRD  120 (277)
T ss_pred             HHHHhcCCCcEEEEEE-EEe---cCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEcc
Confidence            3456678888887665 332   34678999999 789999888433 34688999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++|+|||++.......                                                   
T Consensus       121 ikp~Nili~~~~~~~l~Dfg~~~~~~~~~---------------------------------------------------  149 (277)
T cd05607         121 MKPENVLLDDQGNCRLSDLGLAVELKDGK---------------------------------------------------  149 (277)
T ss_pred             CChHhEEEcCCCCEEEeeceeeeecCCCc---------------------------------------------------
Confidence            99999999999999999999884331110                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......|++.|+|||.+.+..++.++|||||||++|||++
T Consensus       150 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~  189 (277)
T cd05607         150 ----------------------------------------TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVA  189 (277)
T ss_pred             ----------------------------------------eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHh
Confidence                                                    0011257889999999998889999999999999999998


Q ss_pred             ---CCCCCchhh---HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH----HHHhcCCCCCCCc
Q 002736          268 ---PFSTGEEKT---RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM----GELLQSEFLNEPR  329 (886)
Q Consensus       268 ---pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~----~eil~h~~~~~~~  329 (886)
                         ||.......   ...........+.......+++.+|+.+||++||.+||++    .+++.|+||+...
T Consensus       190 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~~  261 (277)
T cd05607         190 GRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTIN  261 (277)
T ss_pred             CCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhcChhhcCCC
Confidence               775433221   1112222212222223456778899999999999999999    6788999998753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.95  E-value=5e-28  Score=259.49  Aligned_cols=199  Identities=16%  Similarity=0.188  Sum_probs=150.5

Q ss_pred             ccccCCCCCCccccccc---cCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           36 DHLRNQGGLSGVCENEA---AIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~---~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +|++++..++ .+....   ..+.++++||| .+++|.+++... ...+++..++.++.||+.||.|||++||+||||||
T Consensus        61 ~h~~i~~~~~-~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~  139 (272)
T cd06637          61 HHRNIATYYG-AFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKG  139 (272)
T ss_pred             CCCCeeeEee-EEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCH
Confidence            5788877666 443222   13568899999 678999999653 35689999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++........                                                     
T Consensus       140 ~nili~~~~~~~l~Dfg~~~~~~~~~~-----------------------------------------------------  166 (272)
T cd06637         140 QNVLLTENAEVKLVDFGVSAQLDRTVG-----------------------------------------------------  166 (272)
T ss_pred             HHEEECCCCCEEEccCCCceecccccc-----------------------------------------------------
Confidence            999999999999999999853311100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----CCCCCcccccchHHHHHHHH
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~s~~sDIwSlGvil~eL  265 (886)
                                                           ......|+..|+|||++.     +..++.++|||||||++|||
T Consensus       167 -------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el  209 (272)
T cd06637         167 -------------------------------------RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEM  209 (272)
T ss_pred             -------------------------------------cCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHH
Confidence                                                 011136788999999986     33588899999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ++   ||.........................+..+.+|+.+||..+|.+||++.+++.||||
T Consensus       210 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         210 AEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             HhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence            99   6654443333332222221112222345678899999999999999999999999997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.95  E-value=5.8e-29  Score=244.42  Aligned_cols=201  Identities=17%  Similarity=0.200  Sum_probs=162.1

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrDlkP  110 (886)
                      +-+++-+-++..||-    .....-..|.||+.+..+..+|+.-.+++++..+=++...|+.||.||.. +||||||+||
T Consensus       145 ~~s~dcpyIV~c~Gy----Fi~n~dV~IcMelMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKP  220 (391)
T KOG0983|consen  145 LKSHDCPYIVQCFGY----FITNTDVFICMELMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKP  220 (391)
T ss_pred             hhccCCCeeeeeeeE----EeeCchHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCc
Confidence            333455666776661    22333456789998888888887777889999999999999999999976 5999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++..|++|+||||++-..-.                                                        
T Consensus       221 SNILlDe~GniKlCDFGIsGrlvd--------------------------------------------------------  244 (391)
T KOG0983|consen  221 SNILLDERGNIKLCDFGISGRLVD--------------------------------------------------------  244 (391)
T ss_pred             cceEEccCCCEEeecccccceeec--------------------------------------------------------
Confidence            999999999999999999833211                                                        


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC---CCCCcccccchHHHHHHHHhc
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG---APVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~---~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                         ++..+...|-+.|||||.+.-   ..|+..+||||||+.|+||.|
T Consensus       245 -----------------------------------SkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaT  289 (391)
T KOG0983|consen  245 -----------------------------------SKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELAT  289 (391)
T ss_pred             -----------------------------------ccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhc
Confidence                                               112333478999999999863   349999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhh---ccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLL---LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                         ||.........+..+..... |.+.   ..++.+.+|+..||.+|+.+||...++|+|||+...
T Consensus       290 g~yPy~~c~tdFe~ltkvln~eP-P~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~y  355 (391)
T KOG0983|consen  290 GQYPYKGCKTDFEVLTKVLNEEP-PLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPFIKRY  355 (391)
T ss_pred             ccCCCCCCCccHHHHHHHHhcCC-CCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHhcCcceeec
Confidence               99888888888888776433 3332   257889999999999999999999999999998754

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.95  E-value=5.9e-28  Score=265.67  Aligned_cols=182  Identities=20%  Similarity=0.307  Sum_probs=145.7

Q ss_pred             CCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCC
Q 002736           54 IDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDS  132 (886)
Q Consensus        54 ~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~  132 (886)
                      .+.+|++||| .|++|.+++.+. ..+++.+++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        73 ~~~~~lv~Ey~~~g~L~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~  151 (323)
T cd05615          73 VDRLYFVMEYVNGGDLMYHIQQV-GKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEH  151 (323)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEecccccccc
Confidence            4678999999 789999999654 56899999999999999999999999999999999999999999999999998532


Q ss_pred             CCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccccc
Q 002736          133 GSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNR  212 (886)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  212 (886)
                      .....                                                                           
T Consensus       152 ~~~~~---------------------------------------------------------------------------  156 (323)
T cd05615         152 MVDGV---------------------------------------------------------------------------  156 (323)
T ss_pred             CCCCc---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             cccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCCh
Q 002736          213 VNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPP  289 (886)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~  289 (886)
                                     ......||+.|+|||++.+..++.++|||||||++|||++   ||............+....  .
T Consensus       157 ---------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~--~  219 (323)
T cd05615         157 ---------------TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNV--S  219 (323)
T ss_pred             ---------------cccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC--C
Confidence                           0011268999999999998889999999999999999999   7765544333333332222  1


Q ss_pred             hhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCC
Q 002736          290 QLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEP  328 (886)
Q Consensus       290 ~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~  328 (886)
                      .+...++.+.+++.+||..+|.+|++     ..++++||||...
T Consensus       220 ~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~  263 (323)
T cd05615         220 YPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRI  263 (323)
T ss_pred             CCccCCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCC
Confidence            22345677889999999999999997     4789999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.4e-28  Score=261.93  Aligned_cols=205  Identities=16%  Similarity=0.177  Sum_probs=157.4

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ...+.+.+|++++..++ .+.   ..+.++++||| .|++|.+++... ...+++.++..++.||+.||.|||++||+||
T Consensus        51 ~~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~  126 (285)
T cd05605          51 KQILEKVNSRFVVSLAY-AYE---TKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYR  126 (285)
T ss_pred             HHHHHhcCCCCEeeeee-eec---CCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEec
Confidence            34555668888888766 333   23578999999 789999888543 3468999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++..+.++++|||++.......                                                  
T Consensus       127 dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~--------------------------------------------------  156 (285)
T cd05605         127 DLKPENILLDDYGHIRISDLGLAVEIPEGE--------------------------------------------------  156 (285)
T ss_pred             CCCHHHEEECCCCCEEEeeCCCceecCCCC--------------------------------------------------
Confidence            999999999999999999999884321100                                                  


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               .....+|++.|+|||.+.+..++.++||||+||++|||+
T Consensus       157 -----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~  195 (285)
T cd05605         157 -----------------------------------------TIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMI  195 (285)
T ss_pred             -----------------------------------------ccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHH
Confidence                                                     000126789999999999888999999999999999999


Q ss_pred             c---CCCCCchhhH---HhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCCc
Q 002736          267 C---PFSTGEEKTR---TMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       267 ~---pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~~  329 (886)
                      +   ||........   ....+.. ..+..+...++.+.+|+.+||..||.+||     +++++++||||....
T Consensus       196 ~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~  268 (285)
T cd05605         196 EGKSPFRQRKEKVKREEVERRVKE-DQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTAN  268 (285)
T ss_pred             HCCCCCCCCchhhHHHHHHHHhhh-cccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCCC
Confidence            8   7765433221   1112221 11222233557788999999999999999     899999999998743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=9.4e-28  Score=254.79  Aligned_cols=200  Identities=19%  Similarity=0.240  Sum_probs=159.9

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+.+.+|++++..++ .+.   ..+.++++||| .|++|.+++... ...+++..+..++.||+.||.|||++||+|+||
T Consensus        52 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl  127 (256)
T cd08529          52 VLAKLDSSYIIRYYE-SFL---DKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDI  127 (256)
T ss_pred             HHHhcCCCCeehhee-eec---cCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            456678999988777 333   34678999998 789999999653 457899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||+++.......                                                   
T Consensus       128 ~~~nili~~~~~~~l~df~~~~~~~~~~~---------------------------------------------------  156 (256)
T cd08529         128 KSLNLFLDAYDNVKIGDLGVAKLLSDNTN---------------------------------------------------  156 (256)
T ss_pred             CcceEEEeCCCCEEEcccccceeccCccc---------------------------------------------------
Confidence            99999999999999999998854321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......|+++|+|||.+.+..++.++|||||||++|||++ 
T Consensus       157 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  197 (256)
T cd08529         157 ---------------------------------------FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTG  197 (256)
T ss_pred             ---------------------------------------hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhC
Confidence                                                   0011267889999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                        ||....... ..........++......+.+.+++.+||+.+|++||++.++++|||+
T Consensus       198 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         198 KHPFDANNQGA-LILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             CCCCCCCCHHH-HHHHHHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence              776554333 333333344444444556788999999999999999999999999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6e-26  Score=236.83  Aligned_cols=283  Identities=19%  Similarity=0.264  Sum_probs=226.8

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcc----cc-----cccceEEe--cCCCCeeeEEEeCCCCCeE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINEN----RD-----IHYPVVEM--ASRSKLSSICWNSYIKSQI  633 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~----~~-----~~~~~~~~--~~~~~I~~l~~~~~~~~~l  633 (886)
                      ..|.-+|+|++++||+++.++++.+++|.=|+..+.....    .+     ...+....  .|...|.+++.++ ++.+|
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgkyl  217 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGKYL  217 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCcEE
Confidence            4588899999999999999999999999999987643220    00     01112222  6788899999998 79999


Q ss_pred             EEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeE
Q 002736          634 ASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVC  713 (886)
Q Consensus       634 as~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~  713 (886)
                      |+|+.|..|.|||.++.+.+..+.+|.+.|.+++|-. ..+.|.+++.|.+|++|++.....+.      ..+.|+..|.
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~ve------tlyGHqd~v~  290 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVE------TLYGHQDGVL  290 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHH------HHhCCcccee
Confidence            9999999999999999999999999999999999985 78899999999999999999843221      2245667788


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEEECCCcEEEEeCCCCCccccCCCc
Q 002736          714 CVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPL  793 (886)
Q Consensus       714 ~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  793 (886)
                      .|.-..- .+.+.+|+.|.++++|++....  ...+.+|...+-||+|.+...++|||.||.|.||++-+.+      |+
T Consensus       291 ~IdaL~r-eR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk------pl  361 (479)
T KOG0299|consen  291 GIDALSR-ERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK------PL  361 (479)
T ss_pred             eechhcc-cceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC------ce
Confidence            8887766 6777788899999999995443  5678899999999999999999999999999999998763      44


Q ss_pred             eEee------------cCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEE
Q 002736          794 HSFT------------GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSV  861 (886)
Q Consensus       794 ~~~~------------~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v  861 (886)
                      .+..            .+..+|++|+..|...++|+||.+|.|++|-+..+-.....-+.          -.-.++|+++
T Consensus       362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~----------ls~~GfVNsl  431 (479)
T KOG0299|consen  362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS----------LSLVGFVNSL  431 (479)
T ss_pred             eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee----------cccccEEEEE
Confidence            4332            12238999999999999999999999999999887332111110          0124689999


Q ss_pred             EEccCCCcEEEEEe
Q 002736          862 CWRGQSSNTLVAAN  875 (886)
Q Consensus       862 ~~s~~~~~~l~s~~  875 (886)
                      +|+++|. .+++|-
T Consensus       432 ~f~~sgk-~ivagi  444 (479)
T KOG0299|consen  432 AFSNSGK-RIVAGI  444 (479)
T ss_pred             EEccCCC-EEEEec
Confidence            9999999 666553

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=6.5e-28  Score=266.24  Aligned_cols=204  Identities=15%  Similarity=0.213  Sum_probs=156.2

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++.+++ ++.   ..+.+|++||| .|++|.++|.+....+++..++.++.||+.||+|||++||+||||||
T Consensus        55 l~~~~~~~i~~l~~-~~~---~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp  130 (331)
T cd05624          55 LVNGDCQWITTLHY-AFQ---DENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKP  130 (331)
T ss_pred             HHhCCCCCEeeEEE-EEE---cCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCch
Confidence            34457777777665 333   34678999999 89999999976556789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +|||++.++.+||+|||++.....+..                                                     
T Consensus       131 ~Nill~~~~~~kl~DfG~a~~~~~~~~-----------------------------------------------------  157 (331)
T cd05624         131 DNVLLDMNGHIRLADFGSCLKMNQDGT-----------------------------------------------------  157 (331)
T ss_pred             HHEEEcCCCCEEEEeccceeeccCCCc-----------------------------------------------------
Confidence            999999999999999999854321100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-----CCCCcccccchHHHHHHHH
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-----APVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-----~~~s~~sDIwSlGvil~eL  265 (886)
                                                          ......+||+.|+|||.+.+     ..++.++|||||||+||||
T Consensus       158 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~el  201 (331)
T cd05624         158 ------------------------------------VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEM  201 (331)
T ss_pred             ------------------------------------eeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhh
Confidence                                                00111368999999999875     4588999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccC---CCChhhhccChhhHHHHHHccCCCCCC--CCCHHHHhcCCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHR---VLPPQLLLKFPKEASFCLWLLHPEPSG--RPKMGELLQSEFLNEP  328 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~--Rps~~eil~h~~~~~~  328 (886)
                      ++   ||................   .+++.....++.+.+++.+||..++.+  |++++++++|+||...
T Consensus       202 l~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~  272 (331)
T cd05624         202 LYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGI  272 (331)
T ss_pred             hhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCC
Confidence            99   886554433333332222   133334456778889999999876654  4789999999999864

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.95  E-value=9.1e-28  Score=255.10  Aligned_cols=202  Identities=16%  Similarity=0.227  Sum_probs=156.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|++++..++ .+.  .....++++||| .+++|.+++... ...+++.+++.++.||+.||.|||++||+|+|
T Consensus        51 ~~l~~l~~~~i~~~~~-~~~--~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~d  127 (257)
T cd08223          51 QLLSQLKHPNIVAYRE-SWE--GEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRD  127 (257)
T ss_pred             HHHHhCCCCCeeeeee-eec--CCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccC
Confidence            3455567888877655 221  123457899999 788999999653 34689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++++|||++........                                                  
T Consensus       128 i~p~nil~~~~~~~~l~df~~~~~~~~~~~--------------------------------------------------  157 (257)
T cd08223         128 LKTQNVFLTRTNIIKVGDLGIARVLENQCD--------------------------------------------------  157 (257)
T ss_pred             CCchhEEEecCCcEEEecccceEEecccCC--------------------------------------------------
Confidence            999999999999999999999853311100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......+++.|+|||.+.+..++.++|||||||++|||++
T Consensus       158 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~  197 (257)
T cd08223         158 ----------------------------------------MASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMAT  197 (257)
T ss_pred             ----------------------------------------ccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHc
Confidence                                                    0011257888999999998889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||...... .....+.....++.....++.+.+|+.+||..+|.+||++.++++||||
T Consensus       198 g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         198 LKHAFNAKDMN-SLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             CCCCCCCCCHH-HHHHHHHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence               66544333 2333333344444444566788999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.95  E-value=5e-28  Score=267.32  Aligned_cols=202  Identities=18%  Similarity=0.184  Sum_probs=152.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhccc-Ceeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ-GIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~-giiHrD  107 (886)
                      ..+...+|++++..++ ++.+   .+.++++||| .|++|.++|.+. ..+++..+..++.||+.||.|||++ +|+|||
T Consensus        55 ~~l~~l~h~~iv~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~d  129 (333)
T cd06650          55 QVLHECNSPYIVGFYG-AFYS---DGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREKHKIMHRD  129 (333)
T ss_pred             HHHHHCCCCcccceeE-EEEE---CCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecC
Confidence            3445567889888777 4443   4678999999 689999999654 5689999999999999999999985 799999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++.+|++|||++......                                                    
T Consensus       130 lkp~Nili~~~~~~kL~Dfg~~~~~~~~----------------------------------------------------  157 (333)
T cd06650         130 VKPSNILVNSRGEIKLCDFGVSGQLIDS----------------------------------------------------  157 (333)
T ss_pred             CChhhEEEcCCCCEEEeeCCcchhhhhh----------------------------------------------------
Confidence            9999999999999999999998432100                                                    


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......|+..|+|||.+.+..++.++|||||||++|||++
T Consensus       158 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~  197 (333)
T cd06650         158 ----------------------------------------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAI  197 (333)
T ss_pred             ----------------------------------------ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence                                                    0001267889999999998889999999999999999998


Q ss_pred             ---CCCCCchhhHHh-------------------------------------------HhhccCCCChhhh-ccChhhHH
Q 002736          268 ---PFSTGEEKTRTM-------------------------------------------SSLRHRVLPPQLL-LKFPKEAS  300 (886)
Q Consensus       268 ---pf~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~-~~~~~~~~  300 (886)
                         ||..........                                           ..+.....+.... ...+++.+
T Consensus       198 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (333)
T cd06650         198 GRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQD  277 (333)
T ss_pred             CCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHH
Confidence               775432211100                                           0000000011111 12356789


Q ss_pred             HHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          301 FCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       301 li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      |+.+||++||.+|||+.|+++||||+..
T Consensus       278 li~~~L~~~P~~Rpt~~ell~h~~~~~~  305 (333)
T cd06650         278 FVNKCLIKNPAERADLKQLMVHAFIKRS  305 (333)
T ss_pred             HHHHhccCCcccCcCHHHHhhCHHHhcC
Confidence            9999999999999999999999999754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3e-25  Score=252.47  Aligned_cols=232  Identities=17%  Similarity=0.233  Sum_probs=182.1

Q ss_pred             ccCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCcccCcccccccce-EEecCCCCeeeEEEeCCCCCeEEEecCCCc
Q 002736          564 LLNSSNLVCSLSFDR-DGELFAAAGVNKKIKVFECDAIINENRDIHYPV-VEMASRSKLSSICWNSYIKSQIASSNFEGV  641 (886)
Q Consensus       564 ~~~h~~~V~sl~f~~-d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~-~~~~~~~~I~~l~~~~~~~~~las~s~Dg~  641 (886)
                      +.+|.+.|.+++|+| ++.+||+|+.|++|+|||+....... ....++ ...+|...|.+|+|+|...++|++|+.|++
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            568999999999999 88999999999999999997532111 111222 344688999999999966689999999999


Q ss_pred             EEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCC--CeEEEEEeC
Q 002736          642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKA--NVCCVQFPL  719 (886)
Q Consensus       642 V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp  719 (886)
                      |+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|+|||+++       +..+..+..+.  .+..+.|.+
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs-------g~~v~tl~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD-------GTIVSSVEAHASAKSQRCLWAK  221 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC-------CcEEEEEecCCCCcceEEEEcC
Confidence            99999999999999999999999999998 899999999999999999998       55565555432  345778998


Q ss_pred             CCCcEEEE-E---eCCCeEEEEecCCCCcceEEEecCC-CCeEEEEec-CCCEEEEEE-CCCcEEEEeCCCCCccccCCC
Q 002736          720 DSGRSLAF-G---SADHRIYYYDLRNSKIPLCTLIGHN-KTVSYVKFV-DATTLVSAS-TDNTLKLWDLSMCTSRVIDTP  792 (886)
Q Consensus       720 ~~~~~l~~-g---s~Dg~I~vwDlr~~~~~~~~~~~h~-~~V~~v~f~-~~~~l~sgs-~Dg~i~lwd~~~~~~~~~~~~  792 (886)
                      + +..+++ |   +.|+.|++||+++...++.....+. ..+....|+ ++.+|++|+ .|+.|++||+....      +
T Consensus       222 ~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~------~  294 (493)
T PTZ00421        222 R-KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER------L  294 (493)
T ss_pred             C-CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc------e
Confidence            8 455554 4   3489999999998876776665444 345555565 888888887 59999999998763      3


Q ss_pred             ceEee-cCCCceeEEEEecC
Q 002736          793 LHSFT-GHTNVKNFVGLSVW  811 (886)
Q Consensus       793 ~~~~~-~h~~~v~~v~~sp~  811 (886)
                      +..+. .+..++..++|.|.
T Consensus       295 ~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        295 TFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeeccCCCCCcceEeccc
Confidence            43332 24556788888885

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1e-25  Score=256.31  Aligned_cols=269  Identities=23%  Similarity=0.324  Sum_probs=234.0

Q ss_pred             ccccccccccceEEeeecCceEEEE-eccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          534 SGWINPFLEGLCKYLSFSKLRVKAD-LNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       534 ~~~~~~~~d~~~~~w~~~~~~~~~~-l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      ..++.+..+.++++|+..++..... +     .+|.+.|.+++|..-+.++++|+.|++++|||+.+..       +...
T Consensus       219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l-----~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------C~~~  286 (537)
T KOG0274|consen  219 GFFKSGSDDSTLHLWDLNNGYLILTRL-----VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------CTHS  286 (537)
T ss_pred             CeEEecCCCceeEEeecccceEEEeec-----cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------EEEE
Confidence            3567888999999999998887755 5     7899999999999878899999999999999987742       3334


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      ..+|.+.|.|+...   +..+++|+.|.+|++|++++++.+..+.+|..+|.++..+   +.++++|+.||+|++||+.+
T Consensus       287 l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  287 LQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             ecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhh
Confidence            45799999999876   4578889999999999999999999999999999999986   68999999999999999998


Q ss_pred             hhhhhccCceeeeeec-CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEEE
Q 002736          693 AILLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS  771 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sgs  771 (886)
                             ..++.++.. ...|.++.+.+.  ..+++|+.|++|++||+++...++.++.+|..-|..+.+ .++.|++++
T Consensus       361 -------~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~-~~~~Lvs~~  430 (537)
T KOG0274|consen  361 -------GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL-RDNFLVSSS  430 (537)
T ss_pred             -------ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc-ccceeEecc
Confidence                   777777764 567999988753  689999999999999999983369999999999877766 578999999


Q ss_pred             CCCcEEEEeCCCCCccccCCCceEeec-CCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceee
Q 002736          772 TDNTLKLWDLSMCTSRVIDTPLHSFTG-HTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSF  838 (886)
Q Consensus       772 ~Dg~i~lwd~~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~  838 (886)
                      .|++|++||...+      .+++++.+ |...|.++++.  ...+++++.|+++++||+.+++....+
T Consensus       431 aD~~Ik~WD~~~~------~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  431 ADGTIKLWDAEEG------ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccccEEEeecccC------ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            9999999999988      45888888 77888888876  578999999999999999999887655

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.95  E-value=6.9e-28  Score=286.39  Aligned_cols=205  Identities=18%  Similarity=0.185  Sum_probs=156.3

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---CCCcChHHHHHHHHHHHHHHHhhccc---
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---KRSVDVYECLHIFRQIVEIVYAAHSQ---  101 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---~~~l~~~~~~~i~~qi~~~l~~lHs~---  101 (886)
                      ...+....|++++.+++ ++.+ ...+.+|++||| .+++|.++|...   ...+++..++.|+.||+.||.|||+.   
T Consensus        63 I~IL~~L~HPNIVrl~d-~f~d-e~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~  140 (1021)
T PTZ00266         63 VNVMRELKHKNIVRYID-RFLN-KANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDG  140 (1021)
T ss_pred             HHHHHHcCCCCcCeEEE-EEEe-cCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34455678899988777 3322 234578999999 788999999542   35689999999999999999999984   


Q ss_pred             ----CeeecccCCcceeeccC-----------------CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhh
Q 002736          102 ----GIVVHNVRPSCFVMSSF-----------------NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDML  160 (886)
Q Consensus       102 ----giiHrDlkP~NIll~~~-----------------~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (886)
                          +||||||||+||||+..                 ..+||+|||++.......                        
T Consensus       141 ~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s------------------------  196 (1021)
T PTZ00266        141 PNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIES------------------------  196 (1021)
T ss_pred             cccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccc------------------------
Confidence                59999999999999642                 348899999885432110                        


Q ss_pred             hhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceec
Q 002736          161 QRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYAS  240 (886)
Q Consensus       161 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a  240 (886)
                                                                                         .....+||+.|+|
T Consensus       197 -------------------------------------------------------------------~~~s~vGTp~YmA  209 (1021)
T PTZ00266        197 -------------------------------------------------------------------MAHSCVGTPYYWS  209 (1021)
T ss_pred             -------------------------------------------------------------------cccccCCCccccC
Confidence                                                                               0011278999999


Q ss_pred             ccccCC--CCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC
Q 002736          241 PEELAG--APVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       241 PE~~~~--~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps  315 (886)
                      ||++.+  ..++.++||||||||||||++   ||.........+..+...... .....++.+.+||..||..+|.+||+
T Consensus       210 PEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~l-pi~~~S~eL~dLI~~~L~~dPeeRPS  288 (1021)
T PTZ00266        210 PELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDL-PIKGKSKELNILIKNLLNLSAKERPS  288 (1021)
T ss_pred             HHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCC-CcCCCCHHHHHHHHHHhcCChhHCcC
Confidence            999865  348999999999999999999   886655544444444433222 22345678899999999999999999


Q ss_pred             HHHHhcCCCCCC
Q 002736          316 MGELLQSEFLNE  327 (886)
Q Consensus       316 ~~eil~h~~~~~  327 (886)
                      +.|+|+|+|+..
T Consensus       289 a~QlL~h~~ik~  300 (1021)
T PTZ00266        289 ALQCLGYQIIKN  300 (1021)
T ss_pred             HHHHhccHHHhh
Confidence            999999999863

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.95  E-value=1e-27  Score=261.17  Aligned_cols=207  Identities=14%  Similarity=0.185  Sum_probs=155.2

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ...+...+|++++..++ ++.   ..+.++++|||.+++|.+++.+....+++..++.++.||+.||.|||++||+|+||
T Consensus        55 ~~~l~~l~h~nI~~~~~-~~~---~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dl  130 (301)
T cd07873          55 VSLLKDLKHANIVTLHD-IIH---TEKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDL  130 (301)
T ss_pred             HHHHHhcCCCCcceEEE-EEe---cCCeEEEEEeccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCC
Confidence            34455567889888777 433   34678999999888999999766667899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++........                                                   
T Consensus       131 kp~Nil~~~~~~~kl~dfg~~~~~~~~~~---------------------------------------------------  159 (301)
T cd07873         131 KPQNLLINERGELKLADFGLARAKSIPTK---------------------------------------------------  159 (301)
T ss_pred             CHHHEEECCCCcEEECcCcchhccCCCCC---------------------------------------------------
Confidence            99999999999999999999853211100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......+++.|+|||.+.+. .++.++|||||||++|||++
T Consensus       160 ---------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t  200 (301)
T cd07873         160 ---------------------------------------TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMST  200 (301)
T ss_pred             ---------------------------------------cccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHh
Confidence                                                   00011568889999998764 48899999999999999999


Q ss_pred             ---CCCCCchhhHHhH--hhccC------------------CCCh--------hhhccChhhHHHHHHccCCCCCCCCCH
Q 002736          268 ---PFSTGEEKTRTMS--SLRHR------------------VLPP--------QLLLKFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       268 ---pf~~~~~~~~~~~--~~~~~------------------~~~~--------~~~~~~~~~~~li~~~L~~dP~~Rps~  316 (886)
                         ||...........  .....                  ..+.        .....++.+.+||.+||+.||.+|||+
T Consensus       201 g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~  280 (301)
T cd07873         201 GRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISA  280 (301)
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCH
Confidence               6644332211110  00000                  0000        012345667899999999999999999


Q ss_pred             HHHhcCCCCCCCc
Q 002736          317 GELLQSEFLNEPR  329 (886)
Q Consensus       317 ~eil~h~~~~~~~  329 (886)
                      .|+|+||||....
T Consensus       281 ~eil~h~~f~~~~  293 (301)
T cd07873         281 EEAMKHPYFHCLG  293 (301)
T ss_pred             HHHhcCccccccc
Confidence            9999999998653

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1e-26  Score=224.18  Aligned_cols=281  Identities=17%  Similarity=0.245  Sum_probs=232.2

Q ss_pred             cCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCc
Q 002736          565 LNSSNLVCSLSFDR---DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGV  641 (886)
Q Consensus       565 ~~h~~~V~sl~f~~---d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~  641 (886)
                      .+|..+|-.++|+|   +|-+|++++.|++=.+=+-++.       .+.-...+|.+.|+..+.+. +....||++.|-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-------dwigtfeghkgavw~~~l~~-na~~aasaaadft   82 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-------DWIGTFEGHKGAVWSATLNK-NATRAASAAADFT   82 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-------CcEEeeeccCcceeeeecCc-hhhhhhhhcccch
Confidence            57999999999996   8889999999987665443332       23345668999999999987 5778899999999


Q ss_pred             EEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeee-ecCCCeEEEEEeCC
Q 002736          642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTI-KTKANVCCVQFPLD  720 (886)
Q Consensus       642 V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~  720 (886)
                      .+|||.-++..+..|. |..-|.+++|+. +.+.|++|+.+.-++|+|++.+.      .+...+ .+...|..+-|...
T Consensus        83 akvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~------App~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPK------APPKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             hhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCC------CCchhhcCCCCcceeEEEecc
Confidence            9999999999988884 888999999996 99999999999999999999853      222333 35678999999887


Q ss_pred             CCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC
Q 002736          721 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       721 ~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h  799 (886)
                       .+.|++.+.|++|++||.|++.. +.++. .+.+|+++..+ +|.+|.+ ..-+.|++||..+.      .+++.+.-.
T Consensus       155 -D~~iLSSadd~tVRLWD~rTgt~-v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf------~~lKs~k~P  224 (334)
T KOG0278|consen  155 -DKCILSSADDKTVRLWDHRTGTE-VQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSF------GLLKSYKMP  224 (334)
T ss_pred             -CceEEeeccCCceEEEEeccCcE-EEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccc------cceeeccCc
Confidence             67788889999999999999985 66665 45679999998 6655554 45689999999886      446666543


Q ss_pred             CCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCC
Q 002736          800 TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN  879 (886)
Q Consensus       800 ~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~  879 (886)
                       ..|.+..++|+..++++|++|..++.||..+++.+-.+            ..+|-++|.||.|+|+|- ..++|+.||+
T Consensus       225 -~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~------------nkgh~gpVhcVrFSPdGE-~yAsGSEDGT  290 (334)
T KOG0278|consen  225 -CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY------------NKGHFGPVHCVRFSPDGE-LYASGSEDGT  290 (334)
T ss_pred             -cccccccccCCCceEEecCcceEEEEEeccCCceeeec------------ccCCCCceEEEEECCCCc-eeeccCCCce
Confidence             34788899999999999999999999999999877553            245678899999999999 9999999999


Q ss_pred             EEEEEe
Q 002736          880 IKILEM  885 (886)
Q Consensus       880 I~iw~l  885 (886)
                      |++|.+
T Consensus       291 irlWQt  296 (334)
T KOG0278|consen  291 IRLWQT  296 (334)
T ss_pred             EEEEEe
Confidence            999986

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.95  E-value=1.1e-27  Score=258.66  Aligned_cols=203  Identities=16%  Similarity=0.202  Sum_probs=154.8

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+.+.+|++++..++ .+.   ..+.++++||| .|++|.+++.. ....+++..++.++.||+.||.|||++||+||||
T Consensus        53 il~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~di  128 (285)
T cd05630          53 ILEKVNSRFVVSLAY-AYE---TKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDL  128 (285)
T ss_pred             HHHhCCCCCeeeeeE-EEe---cCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCC
Confidence            455567888877665 333   24578899998 78999998843 2346899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++..+.++++|||++.......                                                    
T Consensus       129 kp~Nil~~~~~~~~l~Dfg~~~~~~~~~----------------------------------------------------  156 (285)
T cd05630         129 KPENILLDDHGHIRISDLGLAVHVPEGQ----------------------------------------------------  156 (285)
T ss_pred             CHHHEEECCCCCEEEeeccceeecCCCc----------------------------------------------------
Confidence            9999999999999999999884321100                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             .....+|+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       157 ---------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g  197 (285)
T cd05630         157 ---------------------------------------TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAG  197 (285)
T ss_pred             ---------------------------------------cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhC
Confidence                                                   0001267899999999999889999999999999999999 


Q ss_pred             --CCCCCchhh--HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCC
Q 002736          268 --PFSTGEEKT--RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~  328 (886)
                        ||.......  ...................+.+.+|+.+||+.||.+|||     +.|+++||||...
T Consensus       198 ~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~  267 (285)
T cd05630         198 QSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQI  267 (285)
T ss_pred             CCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhcc
Confidence              775433211  111111111111222345577889999999999999999     8999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=4.2e-28  Score=264.94  Aligned_cols=206  Identities=20%  Similarity=0.204  Sum_probs=168.4

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ++...+...+|+|++++|. +.+   ....+|+|||| .|+.|+++|.++ +.+.+.+++.+|.|++.||+|||+++|||
T Consensus       104 rev~imk~l~HPnIvkl~~-v~~---t~~~lylV~eya~~ge~~~yl~~~-gr~~e~~ar~~F~q~vsaveYcH~k~ivH  178 (596)
T KOG0586|consen  104 REVDIMKSLNHPNIVKLFS-VIE---TEATLYLVMEYASGGELFDYLVKH-GRMKEKEARAKFRQIVSAVEYCHSKNIVH  178 (596)
T ss_pred             HHHHHHHhcCCcceeeeee-eee---ecceeEEEEEeccCchhHHHHHhc-ccchhhhhhhhhHHHHHHHHHHhhcceec
Confidence            4455556678999999888 443   34678999999 999999999777 45567999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      ||||.+||||+.+.++||+|||++..+....                                                 
T Consensus       179 rdLk~eNilL~~~mnikIaDfgfS~~~~~~~-------------------------------------------------  209 (596)
T KOG0586|consen  179 RDLKAENILLDENMNIKIADFGFSTFFDYGL-------------------------------------------------  209 (596)
T ss_pred             cccchhhcccccccceeeeccccceeecccc-------------------------------------------------
Confidence            9999999999999999999999986543221                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCC-CcccccchHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPV-SCASDIYRLGVLLFE  264 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~-s~~sDIwSlGvil~e  264 (886)
                                                                ...+.+|++.|.|||++.+..| ++.+|+||||++||-
T Consensus       210 ------------------------------------------~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~  247 (596)
T KOG0586|consen  210 ------------------------------------------MLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYA  247 (596)
T ss_pred             ------------------------------------------cccccCCCCCccChHhhcCcccCCcceehhhhhhhhee
Confidence                                                      1122499999999999999886 779999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      |++   ||....-....-..++....-+..  .+.++.++|.++|.++|.+|+++++++.|.|......
T Consensus       248 LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~--ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~~  314 (596)
T KOG0586|consen  248 LVEGSLPFDGQNLKELRPRVLRGKYRIPFY--MSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLLE  314 (596)
T ss_pred             eeecccccCCcccccccchheeeeecccce--eechhHHHHHHhhccCccccCCHHHhhhhcccchhhh
Confidence            999   997766554444444444444443  3467889999999999999999999999999886543

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.95  E-value=1.3e-27  Score=255.65  Aligned_cols=192  Identities=21%  Similarity=0.280  Sum_probs=151.2

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++..++ .+.   ..+.++++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||+.||+||||||+||+
T Consensus        67 ~h~~iv~~~~-~~~---~~~~~~iv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil  141 (267)
T PHA03390         67 DNPNFIKLYY-SVT---TLKGHVLIMDYIKDGDLFDLLKKE-GKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVL  141 (267)
T ss_pred             cCCCEEEEEE-EEe---cCCeeEEEEEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEE
Confidence            6888877776 332   23578999999 789999999665 47899999999999999999999999999999999999


Q ss_pred             eccCC-ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          115 MSSFN-HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       115 l~~~~-~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      ++.++ .++++|||++...+..                                                          
T Consensus       142 ~~~~~~~~~l~dfg~~~~~~~~----------------------------------------------------------  163 (267)
T PHA03390        142 YDRAKDRIYLCDYGLCKIIGTP----------------------------------------------------------  163 (267)
T ss_pred             EeCCCCeEEEecCccceecCCC----------------------------------------------------------
Confidence            99888 9999999987433111                                                          


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                          ....|+..|+|||.+.+..++.++|||||||++|||++   ||.
T Consensus       164 ------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~  207 (267)
T PHA03390        164 ------------------------------------SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFK  207 (267)
T ss_pred             ------------------------------------ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                                                00146788999999998889999999999999999999   775


Q ss_pred             CCchhhHHhHhhcc--CCCChhhhccChhhHHHHHHccCCCCCCCCC-HHHHhcCCCCC
Q 002736          271 TGEEKTRTMSSLRH--RVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-MGELLQSEFLN  326 (886)
Q Consensus       271 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-~~eil~h~~~~  326 (886)
                      ...........+..  ....+.+...++.+.+||.+||+++|.+||+ ++++|+||||.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h~~~~  266 (267)
T PHA03390        208 EDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFLK  266 (267)
T ss_pred             CCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhcCCccc
Confidence            43322211111111  1122333356788899999999999999996 69999999996

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.95  E-value=2.6e-27  Score=255.51  Aligned_cols=204  Identities=14%  Similarity=0.151  Sum_probs=155.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+..   ...++++||| .+++|..++.+....+++..++.++.||+.||.|||+.||+|||||
T Consensus        55 ~l~~l~h~~ii~~~~-~~~~---~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlk  130 (282)
T cd06643          55 ILASCDHPNIVKLLD-AFYY---ENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLK  130 (282)
T ss_pred             HHHHCCCCCeeeEEE-EEee---CCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence            445567888888766 3432   3568899999 7889988886555678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++........                                                    
T Consensus       131 p~nili~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------------  158 (282)
T cd06643         131 AGNILFTLDGDIKLADFGVSAKNTRTIQ----------------------------------------------------  158 (282)
T ss_pred             cccEEEccCCCEEEcccccccccccccc----------------------------------------------------
Confidence            9999999999999999999853311100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----CCCCCcccccchHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~s~~sDIwSlGvil~e  264 (886)
                                                            ......+++.|+|||.+.     +..++.++|||||||++||
T Consensus       159 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~e  200 (282)
T cd06643         159 --------------------------------------RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIE  200 (282)
T ss_pred             --------------------------------------ccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHH
Confidence                                                  001125788999999984     3457889999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCC-CChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRV-LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      |++   ||................. ..+.....+..+.+|+.+||+++|.+||++.++++||||...
T Consensus       201 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  268 (282)
T cd06643         201 MAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVN  268 (282)
T ss_pred             HccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCCCEecc
Confidence            998   6654443333333222211 112223345678899999999999999999999999999864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.95  E-value=1.3e-27  Score=257.36  Aligned_cols=199  Identities=18%  Similarity=0.191  Sum_probs=150.6

Q ss_pred             ccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcc
Q 002736           34 HGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSC  112 (886)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~N  112 (886)
                      ..+|++++..+. .+.   ..+.++++||| .|++|.+++... ..+++..+..|+.||+.||.|||++||+||||||+|
T Consensus        53 ~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~N  127 (279)
T cd05633          53 TGDCPFIVCMTY-AFH---TPDKLCFILDLMNGGDLHYHLSQH-GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPAN  127 (279)
T ss_pred             hCCCCcEeEEEE-EEe---cCCeEEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHH
Confidence            356777766554 222   24578889998 889999998654 568999999999999999999999999999999999


Q ss_pred             eeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCc
Q 002736          113 FVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSA  192 (886)
Q Consensus       113 Ill~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (886)
                      ||++.++.++++|||++.......                                                        
T Consensus       128 il~~~~~~~~l~dfg~~~~~~~~~--------------------------------------------------------  151 (279)
T cd05633         128 ILLDEHGHVRISDLGLACDFSKKK--------------------------------------------------------  151 (279)
T ss_pred             EEECCCCCEEEccCCcceeccccC--------------------------------------------------------
Confidence            999999999999999884331100                                                        


Q ss_pred             cCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc---C
Q 002736          193 YGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC---P  268 (886)
Q Consensus       193 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~---p  268 (886)
                                                          .....|+..|+|||.+.+ ..++.++|||||||++|||++   |
T Consensus       152 ------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p  195 (279)
T cd05633         152 ------------------------------------PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSP  195 (279)
T ss_pred             ------------------------------------ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCC
Confidence                                                001257889999999864 558999999999999999999   7


Q ss_pred             CCCCchhh-HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCCc
Q 002736          269 FSTGEEKT-RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       269 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~~  329 (886)
                      |....... ...........+..+...++++.+++.+||..||.+||     ++.++++||||....
T Consensus       196 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~  262 (279)
T cd05633         196 FRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGID  262 (279)
T ss_pred             cCCCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCCC
Confidence            75432211 11111111111222234567888999999999999999     699999999998854

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-25  Score=246.58  Aligned_cols=267  Identities=20%  Similarity=0.270  Sum_probs=221.3

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecC
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS  616 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~  616 (886)
                      ++-.....+.+|+..++++......     +.+.|+++.|+++|.+||+|..+|.+.|||.......      +.....|
T Consensus       191 laValg~~vylW~~~s~~v~~l~~~-----~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~------~~~~~~h  259 (484)
T KOG0305|consen  191 LAVALGQSVYLWSASSGSVTELCSF-----GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT------RTLRGSH  259 (484)
T ss_pred             EEEEecceEEEEecCCCceEEeEec-----CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc------ccccCCc
Confidence            4444555789999999886544321     2889999999999999999999999999998763211      1122238


Q ss_pred             CCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEE-ecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhh
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTE-MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       617 ~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~-~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~  695 (886)
                      ...|.+++|+   ...+.+|+.||.|..+|++..+.... +.+|...|..+.|++ ++.+||+|+.|+.+.|||....  
T Consensus       260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~--  333 (484)
T KOG0305|consen  260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSP--  333 (484)
T ss_pred             CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCc--
Confidence            8899999998   67899999999999999998876555 889999999999998 9999999999999999999652  


Q ss_pred             hhccCceeeeeecCCCeEEEEEeCCCCcEEEEEe--CCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEE--
Q 002736          696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS--ADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSA--  770 (886)
Q Consensus       696 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs--~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sg--  770 (886)
                          ........|.+.|..++|+|....+||+|+  .|++|++||..++.. +.... -...|..|.|+ ..+.|+++  
T Consensus       334 ----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  334 ----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             ----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecC
Confidence                344455567899999999999889999964  699999999998874 44433 34679999998 55566653  


Q ss_pred             ECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCC
Q 002736          771 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFP  832 (886)
Q Consensus       771 s~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~  832 (886)
                      ..++.|.||+..+.      .++..+.||+..|..+++||||..|++|+.|.++++|++-..
T Consensus       408 ~s~n~i~lw~~ps~------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  408 YSENQITLWKYPSM------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCcEEEEecccc------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            35789999999986      568999999999999999999999999999999999998775

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.95  E-value=1.5e-27  Score=257.71  Aligned_cols=201  Identities=17%  Similarity=0.204  Sum_probs=151.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCC--CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKP--KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~--~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++.+++ ++.   ..+.++++|||..++|.+++...  +..+++..++.++.||+.||.|||++||+||||
T Consensus        52 ~l~~l~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl  127 (285)
T cd07861          52 LLKELQHPNIVCLQD-VLM---QESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDL  127 (285)
T ss_pred             HHHhcCCCCEeeeEE-EEe---eCCeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCC
Confidence            344456888888777 443   34678999999778999988543  256899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++...+....                                                   
T Consensus       128 ~p~nil~~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------  156 (285)
T cd07861         128 KPQNLLIDNKGVIKLADFGLARAFGIPVR---------------------------------------------------  156 (285)
T ss_pred             CHHHEEEcCCCcEEECcccceeecCCCcc---------------------------------------------------
Confidence            99999999999999999999853321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......++++|+|||.+.+. .++.++|||||||++|||++
T Consensus       157 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~t  197 (285)
T cd07861         157 ---------------------------------------VYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMAT  197 (285)
T ss_pred             ---------------------------------------cccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHH
Confidence                                                   00012568889999998764 47899999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhcc---------------------------CCCChhhhccChhhHHHHHHccCCCCCCCCCHH
Q 002736          268 ---PFSTGEEKTRTMSSLRH---------------------------RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMG  317 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  317 (886)
                         ||............+..                           ..........++++.++|.+||..||.+|||+.
T Consensus       198 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~  277 (285)
T cd07861         198 KKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAK  277 (285)
T ss_pred             CCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHH
Confidence               66544332222111110                           000011223456778999999999999999999


Q ss_pred             HHhcCCCC
Q 002736          318 ELLQSEFL  325 (886)
Q Consensus       318 eil~h~~~  325 (886)
                      +++.||||
T Consensus       278 ~ll~~~~~  285 (285)
T cd07861         278 KALNHPYF  285 (285)
T ss_pred             HHhcCCCC
Confidence            99999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.95  E-value=5.3e-27  Score=254.47  Aligned_cols=207  Identities=16%  Similarity=0.192  Sum_probs=156.0

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+.   ....++++||| .|++|..++.+....+++..++.++.||+.+|.|||++||+|||||
T Consensus        62 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk  137 (292)
T cd06644          62 ILATCNHPYIVKLLG-AFY---WDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLK  137 (292)
T ss_pred             HHHhCCCCcEeeeEE-EEE---eCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCC
Confidence            345667888888666 333   23578899999 7888988886655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++|+|||++........                                                    
T Consensus       138 p~Nili~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------------  165 (292)
T cd06644         138 AGNVLLTLDGDIKLADFGVSAKNVKTLQ----------------------------------------------------  165 (292)
T ss_pred             cceEEEcCCCCEEEccCccceecccccc----------------------------------------------------
Confidence            9999999999999999998743211000                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----CCCCCcccccchHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~s~~sDIwSlGvil~e  264 (886)
                                                            ......+++.|+|||.+.     ...++.++|||||||++||
T Consensus       166 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~e  207 (292)
T cd06644         166 --------------------------------------RRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIE  207 (292)
T ss_pred             --------------------------------------ccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHH
Confidence                                                  011235788899999985     3447889999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCC--hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCch
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLP--PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~  332 (886)
                      |++   ||....... ....+.....+  ........++.+++.+||..+|.+||++.++++||||.......
T Consensus       208 l~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~  279 (292)
T cd06644         208 MAQIEPPHHELNPMR-VLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSVTSNR  279 (292)
T ss_pred             HhcCCCCCccccHHH-HHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccccch
Confidence            999   664433322 22222222111  12233456788999999999999999999999999998754433

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.95  E-value=3.2e-27  Score=254.58  Aligned_cols=195  Identities=18%  Similarity=0.278  Sum_probs=147.3

Q ss_pred             ccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVM  115 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll  115 (886)
                      +|++++..++ ++.+. ..+.++++|||.+++|.+++......+++.+++.++.||+.||.|||+.||+||||||+||++
T Consensus        56 ~h~~i~~~~~-~~~~~-~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l  133 (282)
T cd07831          56 PHPNILRLIE-VLFDR-KTGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILI  133 (282)
T ss_pred             CCCCccceEE-EEecC-CCCcEEEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEE
Confidence            4788877666 55432 336789999997789999986655678999999999999999999999999999999999999


Q ss_pred             ccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCc
Q 002736          116 SSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGT  195 (886)
Q Consensus       116 ~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  195 (886)
                      +. +.+|++|||++........                                                          
T Consensus       134 ~~-~~~kl~dfg~~~~~~~~~~----------------------------------------------------------  154 (282)
T cd07831         134 KD-DILKLADFGSCRGIYSKPP----------------------------------------------------------  154 (282)
T ss_pred             cC-CCeEEEecccccccccCCC----------------------------------------------------------
Confidence            99 9999999999854321100                                                          


Q ss_pred             ccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc---CCCC
Q 002736          196 HVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC---PFST  271 (886)
Q Consensus       196 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~---pf~~  271 (886)
                                                       .....++.+|+|||.+.. ..++.++|||||||++|||++   ||..
T Consensus       155 ---------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~  201 (282)
T cd07831         155 ---------------------------------YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPG  201 (282)
T ss_pred             ---------------------------------cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCC
Confidence                                             001256889999998755 447899999999999999998   5644


Q ss_pred             CchhhHHhHhhcc---C-----------------CCC--------hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCC
Q 002736          272 GEEKTRTMSSLRH---R-----------------VLP--------PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSE  323 (886)
Q Consensus       272 ~~~~~~~~~~~~~---~-----------------~~~--------~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~  323 (886)
                      ....... ..+..   .                 ..+        +.....+..+.++|.+||.++|.+||++.++++||
T Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~  280 (282)
T cd07831         202 TNELDQI-AKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHP  280 (282)
T ss_pred             CCHHHHH-HHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhCC
Confidence            3322111 11100   0                 000        01123456788999999999999999999999999


Q ss_pred             CC
Q 002736          324 FL  325 (886)
Q Consensus       324 ~~  325 (886)
                      ||
T Consensus       281 ~~  282 (282)
T cd07831         281 YF  282 (282)
T ss_pred             CC
Confidence            97

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.95  E-value=1.9e-27  Score=254.37  Aligned_cols=200  Identities=18%  Similarity=0.245  Sum_probs=152.2

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .+++|.+++... +.+++.+++.++.||+.||.|||++||+|+||
T Consensus        58 ~~~~~l~h~~ii~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  132 (267)
T cd06645          58 IMMKDCKHSNIVAYFG-SYL---RRDKLWICMEFCGGGSLQDIYHVT-GPLSESQIAYVSRETLQGLYYLHSKGKMHRDI  132 (267)
T ss_pred             HHHHhCCCCCeeeEEE-EEE---eCCEEEEEEeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            3444567888888777 332   34678899999 678999998654 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++..+.++++|||++........                                                   
T Consensus       133 kp~nili~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------  161 (267)
T cd06645         133 KGANILLTDNGHVKLADFGVSAQITATIA---------------------------------------------------  161 (267)
T ss_pred             CHHHEEECCCCCEEECcceeeeEccCccc---------------------------------------------------
Confidence            99999999999999999999853321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---CCCCCcccccchHHHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---GAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~sDIwSlGvil~eL  265 (886)
                                                             ......|+..|+|||.+.   ...++.++|||||||++|||
T Consensus       162 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l  202 (267)
T cd06645         162 ---------------------------------------KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIEL  202 (267)
T ss_pred             ---------------------------------------ccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHH
Confidence                                                   001126788999999974   44588999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCCChhh---hccChhhHHHHHHccCCCCCCCCCHHHHhcCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVLPPQL---LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEF  324 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~  324 (886)
                      ++   ||..................++..   ...+..+.+++.+||..+|++||+++++++|||
T Consensus       203 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         203 AELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             hcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence            99   665544333222222222222222   123456789999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=9.5e-28  Score=278.46  Aligned_cols=208  Identities=15%  Similarity=0.143  Sum_probs=151.8

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCC----CCCcChHHHHHHHHHHHHHHHhhcccCe
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKP----KRSVDVYECLHIFRQIVEIVYAAHSQGI  103 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~----~~~l~~~~~~~i~~qi~~~l~~lHs~gi  103 (886)
                      +...+.+.+|+|++.+++ ++.+   .+..|++||+.+++|.+++...    .......+++.|+.||+.||.|||++||
T Consensus       213 Ei~il~~l~HpnIv~l~~-~~~~---~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gI  288 (501)
T PHA03210        213 EILALGRLNHENILKIEE-ILRS---EANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKL  288 (501)
T ss_pred             HHHHHHhCCCCCcCcEeE-EEEE---CCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCe
Confidence            344566778999998777 5543   4567888999888999887432    1223467788999999999999999999


Q ss_pred             eecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccc
Q 002736          104 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSE  183 (886)
Q Consensus       104 iHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  183 (886)
                      |||||||+||||+.++.+||+|||+++.+......                                             
T Consensus       289 iHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~---------------------------------------------  323 (501)
T PHA03210        289 IHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREA---------------------------------------------  323 (501)
T ss_pred             ecCCCCHHHEEECCCCCEEEEeCCCceecCccccc---------------------------------------------
Confidence            99999999999999999999999998644221000                                             


Q ss_pred             ccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHH
Q 002736          184 ASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLF  263 (886)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~  263 (886)
                                                                  .....+||..|+|||++.+..++.++|||||||+||
T Consensus       324 --------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  359 (501)
T PHA03210        324 --------------------------------------------FDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILL  359 (501)
T ss_pred             --------------------------------------------ccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHH
Confidence                                                        011137899999999999988999999999999999


Q ss_pred             HHhc----CCCCCc--hhhHHhHhhcc-----CCCC-----------------------hhh--hccChhhHHHHHHccC
Q 002736          264 ELFC----PFSTGE--EKTRTMSSLRH-----RVLP-----------------------PQL--LLKFPKEASFCLWLLH  307 (886)
Q Consensus       264 eLl~----pf~~~~--~~~~~~~~~~~-----~~~~-----------------------~~~--~~~~~~~~~li~~~L~  307 (886)
                      ||++    |+....  ........+..     ..++                       +..  .....++.++|.+||.
T Consensus       360 ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~  439 (501)
T PHA03210        360 DMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLT  439 (501)
T ss_pred             HHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhc
Confidence            9998    332221  11111111110     0000                       000  1123456688999999


Q ss_pred             CCCCCCCCHHHHhcCCCCCCC
Q 002736          308 PEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       308 ~dP~~Rps~~eil~h~~~~~~  328 (886)
                      +||.+|||+.|+|.||||...
T Consensus       440 ~DP~~Rpsa~elL~hp~f~~~  460 (501)
T PHA03210        440 FDWHLRPGAAELLALPLFSAE  460 (501)
T ss_pred             cCcccCcCHHHHhhChhhhcC
Confidence            999999999999999999764

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=5e-25  Score=251.41  Aligned_cols=254  Identities=14%  Similarity=0.186  Sum_probs=190.7

Q ss_pred             cccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCcccCcccccccce-EEecC
Q 002736          539 PFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRD-GELFAAAGVNKKIKVFECDAIINENRDIHYPV-VEMAS  616 (886)
Q Consensus       539 ~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d-~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~-~~~~~  616 (886)
                      |..++.+++|+..+......+     .+|.+.|.+++|+|+ +.+||||+.|++|+||++............+. ...+|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-----~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-----KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-----cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            566888999998776555554     679999999999996 78999999999999999975321111111122 23468


Q ss_pred             CCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhh
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILL  696 (886)
Q Consensus       617 ~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~  696 (886)
                      ...|.+|+|+|....+|+|++.||+|+|||+++++.+..+. |...|.+++|+| ++.+|++++.|+.|+|||+++    
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs----  198 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK----  198 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC----
Confidence            89999999999655567899999999999999998877775 668899999998 899999999999999999998    


Q ss_pred             hccCceeeeeecC-CC-----eEEEEEeCCCCcEEEEEeCCC----eEEEEecCCCCcceEEEecCC--CCeEEEEec-C
Q 002736          697 LHLGVSIGTIKTK-AN-----VCCVQFPLDSGRSLAFGSADH----RIYYYDLRNSKIPLCTLIGHN--KTVSYVKFV-D  763 (886)
Q Consensus       697 ~~~~~~~~~~~~~-~~-----v~~v~~sp~~~~~l~~gs~Dg----~I~vwDlr~~~~~~~~~~~h~--~~V~~v~f~-~  763 (886)
                         +..+..+..+ +.     +....|+++ +.+|++++.|+    .|++||+++...++..+..+.  ..+.....+ +
T Consensus       199 ---g~~i~tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t  274 (568)
T PTZ00420        199 ---QEIASSFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST  274 (568)
T ss_pred             ---CcEEEEEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence               5555555543 22     233445677 67888877664    799999998666777664433  222223333 6


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCC
Q 002736          764 ATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD  812 (886)
Q Consensus       764 ~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g  812 (886)
                      +.++++|+.|++|++|++.....    ..+..+. +..+..+++|.|..
T Consensus       275 g~l~lsGkGD~tIr~~e~~~~~~----~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        275 GLIYLIGKGDGNCRYYQHSLGSI----RKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCEEEEEECCCeEEEEEccCCcE----Eeecccc-cCCCccceEEcccc
Confidence            88999999999999999986532    2233333 56778899999974

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.94  E-value=1.6e-27  Score=254.66  Aligned_cols=207  Identities=16%  Similarity=0.174  Sum_probs=158.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+.+.+|++++..++ +|.+   .+.++++||| .|++|.+++.+. ..+++..+..++.||+.||.|||+.||+|+||
T Consensus        54 ~~l~~l~~~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl  128 (265)
T cd06631          54 DLLKSLKHVNIVQYLG-TCLD---DNTISIFMEFVPGGSISSILNRF-GPLPEPVFCKYTKQILDGVAYLHNNCVVHRDI  128 (265)
T ss_pred             HHHHhcCCCCEeeEee-Eeec---CCeEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCc
Confidence            3455667888887666 5543   3778999999 789999999654 46899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++............                                               
T Consensus       129 ~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-----------------------------------------------  161 (265)
T cd06631         129 KGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTH-----------------------------------------------  161 (265)
T ss_pred             CHHhEEECCCCeEEeccchhhHhhhhccccccc-----------------------------------------------
Confidence            999999999999999999988543211000000                                               


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                           ........|+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       162 -------------------------------------~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g  204 (265)
T cd06631         162 -------------------------------------SNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATG  204 (265)
T ss_pred             -------------------------------------cccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhC
Confidence                                                 000011257889999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhcc-CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRH-RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                        ||............... ...++........+.+++.+||..+|.+||++.++++||||
T Consensus       205 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         205 KPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             CCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence              77554433333222222 23333444456778899999999999999999999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.94  E-value=2.8e-27  Score=255.16  Aligned_cols=199  Identities=16%  Similarity=0.176  Sum_probs=148.7

Q ss_pred             ccccCCCCCCcccccc---ccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           36 DHLRNQGGLSGVCENE---AAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~---~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +|++++..++ .+...   ...+.++++||| .+++|.+++... ...+++..++.++.||+.||.|||++||+|+||||
T Consensus        71 ~h~~i~~~~~-~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~  149 (282)
T cd06636          71 HHRNIATYYG-AFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKG  149 (282)
T ss_pred             CCCcEEEEee-ehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCH
Confidence            6788877666 33221   234678999999 677999988543 34578999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++........                                                     
T Consensus       150 ~nili~~~~~~~l~dfg~~~~~~~~~~-----------------------------------------------------  176 (282)
T cd06636         150 QNVLLTENAEVKLVDFGVSAQLDRTVG-----------------------------------------------------  176 (282)
T ss_pred             HHEEECCCCCEEEeeCcchhhhhcccc-----------------------------------------------------
Confidence            999999999999999998853311000                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----CCCCCcccccchHHHHHHHH
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~s~~sDIwSlGvil~eL  265 (886)
                                                           ......|++.|+|||.+.     +..++.++|||||||++|||
T Consensus       177 -------------------------------------~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el  219 (282)
T cd06636         177 -------------------------------------RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEM  219 (282)
T ss_pred             -------------------------------------CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHH
Confidence                                                 001126788999999986     34588899999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ++   ||.........................++.+.+||.+||..||.+||++.|+++||||
T Consensus       220 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         220 AEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             HhCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence            99   7754433222221111111111222355778899999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.94  E-value=2.1e-27  Score=253.98  Aligned_cols=207  Identities=16%  Similarity=0.194  Sum_probs=159.5

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+....|++++..++ .+.   ..+.++++||| .+++|.+++... ..+++..+..++.||+.||+|||++||+|||
T Consensus        57 ~~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~d  131 (267)
T cd06628          57 IALLKELQHENIVQYLG-SSL---DADHLNIFLEYVPGGSVAALLNNY-GAFEETLVRNFVRQILKGLNYLHNRGIIHRD  131 (267)
T ss_pred             HHHHHhcCCCCeeeEEE-EEE---eCCccEEEEEecCCCCHHHHHHhc-cCccHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            34455667888888766 333   34677888999 788999999654 5789999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++++|||.++...........                                              
T Consensus       132 i~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~----------------------------------------------  165 (267)
T cd06628         132 IKGANILVDNKGGIKISDFGISKKLEANSLSTKT----------------------------------------------  165 (267)
T ss_pred             CCHHHEEEcCCCCEEecccCCCcccccccccCCc----------------------------------------------
Confidence            9999999999999999999998654321100000                                              


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                            ........|+..|+|||.+.+..++.++|||||||++|||++
T Consensus       166 --------------------------------------~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~  207 (267)
T cd06628         166 --------------------------------------NGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLT  207 (267)
T ss_pred             --------------------------------------cccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhh
Confidence                                                  000111357888999999988889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||........ +..+.....+.........+.+++.+||+++|.+||++.++++||||
T Consensus       208 g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         208 GKHPFPDCTQLQA-IFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             CCCCCCCccHHHH-HHHHhccCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence               7765443332 23333333344444556778899999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.94  E-value=1.8e-27  Score=254.44  Aligned_cols=206  Identities=18%  Similarity=0.172  Sum_probs=153.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+....|++++..++ ++.+ .....++++||| .+++|.+++.+. ..+++..++.++.||+.||.|||++||+||||
T Consensus        56 ~~l~~l~h~~i~~~~~-~~~~-~~~~~~~l~~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l  132 (266)
T cd06651          56 QLLKNLQHERIVQYYG-CLRD-RAEKTLTIFMEYMPGGSVKDQLKAY-GALTESVTRKYTRQILEGMSYLHSNMIVHRDI  132 (266)
T ss_pred             HHHHHcCCCCeeeEEE-EEEc-CCCCEEEEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCC
Confidence            3555667888888766 3332 234567889998 788999999654 46899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++..........                                                 
T Consensus       133 ~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~-------------------------------------------------  163 (266)
T cd06651         133 KGANILRDSAGNVKLGDFGASKRLQTICMSG-------------------------------------------------  163 (266)
T ss_pred             CHHHEEECCCCCEEEccCCCccccccccccC-------------------------------------------------
Confidence            9999999999999999999985431110000                                                 


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            .......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       164 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g  205 (266)
T cd06651         164 --------------------------------------TGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTE  205 (266)
T ss_pred             --------------------------------------CccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHC
Confidence                                                  00011256888999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                        ||..................+.......+.+.+++ .||..+|.+||+++|+++||||+
T Consensus       206 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         206 KPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             CCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence              77544333333322222222222333456667787 67778999999999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.94  E-value=2.1e-27  Score=256.61  Aligned_cols=203  Identities=20%  Similarity=0.267  Sum_probs=152.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+...+|++++..++ ++.+   ...++++|||.|++|.+++......+++.+++.++.||+.||.|||++||+|+||||
T Consensus        52 ~l~~~~~~~i~~~~~-~~~~---~~~~~~v~e~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p  127 (286)
T cd07832          52 ALQACQHPYVVKLLD-VFPH---GSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKP  127 (286)
T ss_pred             HHHhCCCCCCcceee-EEec---CCeeEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCH
Confidence            344456888888776 3332   567899999999999999966557799999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++..+.++++|||++........                                                     
T Consensus       128 ~ni~~~~~~~~~l~dfg~~~~~~~~~~-----------------------------------------------------  154 (286)
T cd07832         128 ANLLISADGVLKIADFGLARLFSEEEP-----------------------------------------------------  154 (286)
T ss_pred             HHEEEcCCCcEEEeeeeecccccCCCC-----------------------------------------------------
Confidence            999999999999999999854422100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~--  267 (886)
                                                          .......|+.+|+|||.+.+.. ++.++|||||||++|||++  
T Consensus       155 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~  198 (286)
T cd07832         155 ------------------------------------RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGS  198 (286)
T ss_pred             ------------------------------------CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCC
Confidence                                                0001126789999999987644 7899999999999999999  


Q ss_pred             CCCCCchhhHHhHhhccC---------------------CC--------ChhhhccChhhHHHHHHccCCCCCCCCCHHH
Q 002736          268 PFSTGEEKTRTMSSLRHR---------------------VL--------PPQLLLKFPKEASFCLWLLHPEPSGRPKMGE  318 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~---------------------~~--------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  318 (886)
                      |++...........+...                     ..        ..........+.+|+.+||.++|.+||++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  278 (286)
T cd07832         199 PLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAE  278 (286)
T ss_pred             cCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHH
Confidence            443333222211111100                     00        0111233466779999999999999999999


Q ss_pred             HhcCCCCC
Q 002736          319 LLQSEFLN  326 (886)
Q Consensus       319 il~h~~~~  326 (886)
                      +++||||.
T Consensus       279 ~l~h~~~~  286 (286)
T cd07832         279 ALRHPYFT  286 (286)
T ss_pred             HhhCcCcC
Confidence            99999984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.94  E-value=1.8e-27  Score=262.47  Aligned_cols=211  Identities=17%  Similarity=0.132  Sum_probs=151.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++.+++ ++..   .+.++++||| .+++|.+++... ...+++..++.++.||+.||+|||++||+||||
T Consensus        52 ~l~~l~hpniv~~~~-~~~~---~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dl  127 (327)
T cd08227          52 VSKLFNHPNIVPYRA-TFIA---DNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSV  127 (327)
T ss_pred             HHHhcCCCCeeeEEE-EEEE---CCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCC
Confidence            334458899988776 5543   4568899999 789999999543 345899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.++++||+.+.........                                    ...           
T Consensus       128 kp~Nil~~~~~~~~l~~~~~~~~~~~~~~~------------------------------------~~~-----------  160 (327)
T cd08227         128 KASHILISVDGKVYLSGLRSNLSMINHGQR------------------------------------LRV-----------  160 (327)
T ss_pred             ChhhEEEecCCcEEEcccchhhcccccccc------------------------------------ccc-----------
Confidence            999999999999999999865322100000                                    000           


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC--CCCCcccccchHHHHHHHHh
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG--APVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~--~~~s~~sDIwSlGvil~eLl  266 (886)
                                         .              ..   ......++..|+|||++.+  ..++.++|||||||++|||+
T Consensus       161 -------------------~--------------~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~  204 (327)
T cd08227         161 -------------------V--------------HD---FPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELA  204 (327)
T ss_pred             -------------------c--------------cc---ccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHH
Confidence                               0              00   0001146778999999976  35899999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCC--------------------------------------------ChhhhccChhhH
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVL--------------------------------------------PPQLLLKFPKEA  299 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~  299 (886)
                      +   ||............+.....                                            .+......+.+.
T Consensus       205 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (327)
T cd08227         205 NGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFH  284 (327)
T ss_pred             HCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHH
Confidence            9   77543332222222111000                                            001112345678


Q ss_pred             HHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          300 SFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       300 ~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      +|+.+||+.||.+|||++|+++||||+..
T Consensus       285 ~li~~~l~~dP~~Rpt~~ell~~p~f~~~  313 (327)
T cd08227         285 HFVEQCLQRNPDARPSASTLLNHSFFKQI  313 (327)
T ss_pred             HHHHHHHhhCchhcCCHHHHhcChhhhhc
Confidence            99999999999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.4e-27  Score=232.08  Aligned_cols=192  Identities=15%  Similarity=0.244  Sum_probs=152.3

Q ss_pred             ceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCC
Q 002736           56 PFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSD  135 (886)
Q Consensus        56 ~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~  135 (886)
                      .||+|+.++..+|.-+|.....+++..+++.++++++.||.|+|...|+|||+||+|+||+.+|.+|++|||+++.+...
T Consensus        98 t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~  177 (376)
T KOG0669|consen   98 TFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFSTS  177 (376)
T ss_pred             eeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccceecc
Confidence            38999999999999999777678999999999999999999999999999999999999999999999999999655322


Q ss_pred             ccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCccccccccccccc
Q 002736          136 SHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNV  215 (886)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  215 (886)
                      .-.                                                                             
T Consensus       178 ~n~-----------------------------------------------------------------------------  180 (376)
T KOG0669|consen  178 KNV-----------------------------------------------------------------------------  180 (376)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc--CCCCCchhhHHhHhh---ccCCCCh
Q 002736          216 EQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSL---RHRVLPP  289 (886)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~--pf~~~~~~~~~~~~~---~~~~~~~  289 (886)
                               .+...+..+-|.||++||.+.|.. |+++.|||..|||+.||++  |.+.++........+   .....+.
T Consensus       181 ---------~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tke  251 (376)
T KOG0669|consen  181 ---------VKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKE  251 (376)
T ss_pred             ---------CCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcc
Confidence                     000233347799999999999965 9999999999999999999  776666554443322   2221111


Q ss_pred             hhh-------------------------------ccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCchH
Q 002736          290 QLL-------------------------------LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSME  333 (886)
Q Consensus       290 ~~~-------------------------------~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~~  333 (886)
                      .|+                               ...+++.+|+.++|..||.+|+.++++|.|.||...+.+..
T Consensus       252 vWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~pqa  326 (376)
T KOG0669|consen  252 VWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDPMPQA  326 (376)
T ss_pred             cCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcCCcchh
Confidence            110                               11235679999999999999999999999999998766543

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.7e-27  Score=257.91  Aligned_cols=235  Identities=16%  Similarity=0.183  Sum_probs=163.5

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+.+.+|++++..++ .+.   ..+.++++||| .|++|.+++.+. ...+++..++.++.||+.||.|||+.||+|+|
T Consensus        53 ~~l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~d  128 (316)
T cd05574          53 EILATLDHPFLPTLYA-SFQ---TETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRD  128 (316)
T ss_pred             HHHHhCCCCCchhhee-eee---cCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccC
Confidence            4455567888888766 333   34678899998 788999999653 35789999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++++|||++...........   ...                       ......       .+...
T Consensus       129 lkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~---~~~-----------------------~~~~~~-------~~~~~  175 (316)
T cd05574         129 LKPENILLHESGHIMLSDFDLSKQSDVEPPPVS---KAL-----------------------RKGSRR-------SSVNS  175 (316)
T ss_pred             CChHHeEEcCCCCEEEeecchhhcccccccccc---ccc-----------------------cccccc-------ccccc
Confidence            999999999999999999999865432210000   000                       000000       00000


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                           .....                       ............+|+..|+|||.+.+..++.++|||||||++|+|++
T Consensus       176 -----~~~~~-----------------------~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~  227 (316)
T cd05574         176 -----IPSET-----------------------FSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLY  227 (316)
T ss_pred             -----cchhh-----------------------hcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhh
Confidence                 00000                       00000001122478999999999998889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC----HHHHhcCCCCCCCc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK----MGELLQSEFLNEPR  329 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps----~~eil~h~~~~~~~  329 (886)
                         ||...................+.....++.+.+++.+||..+|.+||+    ++|+|+||||....
T Consensus       228 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~  296 (316)
T cd05574         228 GTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVN  296 (316)
T ss_pred             CCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCC
Confidence               775554443333333323222222235677889999999999999999    99999999998754

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-27  Score=249.41  Aligned_cols=185  Identities=18%  Similarity=0.224  Sum_probs=147.6

Q ss_pred             cCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccC
Q 002736           53 AIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCS  130 (886)
Q Consensus        53 ~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~  130 (886)
                      ..+.+|++|.. +||+|.-.|... +..+++..++.|+.+|+.||++||.++||.|||||+||||+..|+|+|.|+|+|.
T Consensus       256 Tkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAv  335 (591)
T KOG0986|consen  256 TKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAV  335 (591)
T ss_pred             CCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEE
Confidence            46788889888 999999988554 3578999999999999999999999999999999999999999999999999995


Q ss_pred             CCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccc
Q 002736          131 DSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILD  210 (886)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  210 (886)
                      ++....                                                                          
T Consensus       336 ei~~g~--------------------------------------------------------------------------  341 (591)
T KOG0986|consen  336 EIPEGK--------------------------------------------------------------------------  341 (591)
T ss_pred             ecCCCC--------------------------------------------------------------------------
Confidence            542110                                                                          


Q ss_pred             cccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCchhhHH---hHhhcc
Q 002736          211 NRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRT---MSSLRH  284 (886)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~---~~~~~~  284 (886)
                                       .....+||..|||||++.+..|+++.|+|||||+||||+.   ||....+....   -..+..
T Consensus       342 -----------------~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~  404 (591)
T KOG0986|consen  342 -----------------PIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLE  404 (591)
T ss_pred             -----------------ccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhc
Confidence                             0112389999999999999999999999999999999998   88654433221   111111


Q ss_pred             CCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCCc
Q 002736          285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEPR  329 (886)
Q Consensus       285 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~~  329 (886)
                      . ........++++++|+..+|.+||.+|..     ++++.+||||+...
T Consensus       405 ~-~~ey~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~ln  453 (591)
T KOG0986|consen  405 D-PEEYSDKFSEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLN  453 (591)
T ss_pred             c-hhhcccccCHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccCC
Confidence            1 11112345678889999999999999965     67999999998754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.5e-25  Score=256.66  Aligned_cols=290  Identities=19%  Similarity=0.323  Sum_probs=235.7

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEEcCcccCcccc----cccceEEe-cCCCCeeeEEEeCCCCCeEEEecC
Q 002736          566 NSSNLVCSLSFDRDGELFAAAG--VNKKIKVFECDAIINENRD----IHYPVVEM-ASRSKLSSICWNSYIKSQIASSNF  638 (886)
Q Consensus       566 ~h~~~V~sl~f~~d~~~lat~~--~d~~Ikiwd~~~~~~~~~~----~~~~~~~~-~~~~~I~~l~~~~~~~~~las~s~  638 (886)
                      ++...|.+|+.+|||..+||||  .|+.++||+.+....+...    .+..+..+ .|.+.|+|+.|+| ++.+||+|+.
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSD   89 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSD   89 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccC
Confidence            3466799999999999999999  9999999998765433221    22233333 5899999999999 8999999999


Q ss_pred             CCcEEEEECCC------------------ceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccC
Q 002736          639 EGVVQVWDVSR------------------SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLG  700 (886)
Q Consensus       639 Dg~V~iWd~~t------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~  700 (886)
                      |+.|.||....                  .+++..+.+|...|.+++|+| ++.+||+++-|++|.|||.++       .
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~t-------F  161 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKT-------F  161 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccc-------c
Confidence            99999998762                  135677899999999999999 999999999999999999998       4


Q ss_pred             ceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCC------CCeEEEEec-CCCEEEEEEC
Q 002736          701 VSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN------KTVSYVKFV-DATTLVSAST  772 (886)
Q Consensus       701 ~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~------~~V~~v~f~-~~~~l~sgs~  772 (886)
                      ..+..+. |...|..|.|+|- |++||+-+.|++|++|++.+... .+.+.++-      .-...+.|+ ||++|+++..
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i-~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGI-EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeeeeecccccccceEECCc-cCeeeeecCCceEEEEEccccee-eEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            5556665 4567999999999 99999999999999999877553 44444332      346788887 9999998653


Q ss_pred             ----CCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecC-----CC------------EEEEEcCCCcEEEEecCC
Q 002736          773 ----DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW-----DG------------YVATGSETNEVFVYHKAF  831 (886)
Q Consensus       773 ----Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-----g~------------~lasgs~Dg~v~iwd~~~  831 (886)
                          -.++.|.+-.+.+.      -..|.||..++.++.|+|.     ..            .+|+||.|++|.||....
T Consensus       240 ~n~~~~~~~IieR~tWk~------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKV------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             ccCCcceeEEEecCCcee------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence                34788888776643      5789999999999999984     11            689999999999999999


Q ss_pred             CCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          832 PMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       832 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      ++|+....          +  --...|.+++|+|||- .|++++.||+|.++.+
T Consensus       314 ~RPl~vi~----------~--lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  314 PRPLFVIH----------N--LFNKSIVDMSWSPDGF-SLFACSLDGTVALIHF  354 (942)
T ss_pred             CCchhhhh----------h--hhcCceeeeeEcCCCC-eEEEEecCCeEEEEEc
Confidence            88886442          1  1134599999999999 9999999999998864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.5e-25  Score=230.13  Aligned_cols=282  Identities=17%  Similarity=0.283  Sum_probs=236.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEEC
Q 002736          568 SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDV  647 (886)
Q Consensus       568 ~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~  647 (886)
                      ...++++...|....++|||.|+.+.+||....       .......+|..+|+.+.++| +...+++++.|..|+||.+
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-------q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~  290 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN-------QILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSV  290 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchh-------hhhhhccCcceEEEEEEecc-chhheeecCCcceEEeecc
Confidence            346788888887789999999999999998752       11223457888999999999 6889999999999999999


Q ss_pred             CCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecC---CCeEEEEEeCCCCcE
Q 002736          648 SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTK---ANVCCVQFPLDSGRS  724 (886)
Q Consensus       648 ~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~~~~~  724 (886)
                      ...........|..+|+.+..+| ++.+|+++++||+.-..|+++       +..+....+.   -.+++.+|+|| |.+
T Consensus       291 ~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~-------g~~lt~vs~~~s~v~~ts~~fHpD-gLi  361 (506)
T KOG0289|consen  291 PLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISS-------GSQLTVVSDETSDVEYTSAAFHPD-GLI  361 (506)
T ss_pred             ccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEccC-------CcEEEEEeeccccceeEEeeEcCC-ceE
Confidence            88888888889999999999998 999999999999999999999       6655555443   34899999999 999


Q ss_pred             EEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecC-CCc
Q 002736          725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH-TNV  802 (886)
Q Consensus       725 l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h-~~~  802 (886)
                      |.+|..|+.|++||+.+.. .+..|.+|.++|..|+|+ +|-+|++++.|+.|++||++...      ...++.-. ..+
T Consensus       362 fgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------n~kt~~l~~~~~  434 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------NFKTIQLDEKKE  434 (506)
T ss_pred             EeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc------ccceeecccccc
Confidence            9999999999999999888 489999999999999999 99999999999999999999874      24444422 237


Q ss_pred             eeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEE
Q 002736          803 KNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI  882 (886)
Q Consensus       803 v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~i  882 (886)
                      ++++.|.+.|.||+.++.|=.|++++..+...-.           ..+..+|.+....|.|..... ++++++-|..+++
T Consensus       435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~-----------~~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~  502 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTE-----------IKELADHSGLSTGVRFGEHAQ-YLASTSMDAILRL  502 (506)
T ss_pred             ceeEEEcCCCCeEEeecceeEEEEEeccccccee-----------eehhhhcccccceeeecccce-EEeeccchhheEE
Confidence            9999999999999999888777777755533221           123456777889999999888 9999999999998


Q ss_pred             EEe
Q 002736          883 LEM  885 (886)
Q Consensus       883 w~l  885 (886)
                      +.+
T Consensus       503 ~a~  505 (506)
T KOG0289|consen  503 YAL  505 (506)
T ss_pred             eec
Confidence            865

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.8e-25  Score=244.72  Aligned_cols=271  Identities=17%  Similarity=0.317  Sum_probs=220.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEE
Q 002736          574 LSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVL  653 (886)
Q Consensus       574 l~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~  653 (886)
                      +.|+. ...||. +....+.+|+..+..      ...+..+. ...|+++.|++ ++.+||.|..+|.|.|||..+.+.+
T Consensus       183 ldWss-~n~laV-alg~~vylW~~~s~~------v~~l~~~~-~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  183 LDWSS-ANVLAV-ALGQSVYLWSASSGS------VTELCSFG-EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKT  252 (484)
T ss_pred             hhccc-CCeEEE-EecceEEEEecCCCc------eEEeEecC-CCceEEEEECC-CCCEEEEeecCCeEEEEehhhcccc
Confidence            45552 234443 444688999876531      12222333 78899999998 7999999999999999999999999


Q ss_pred             EEecc-cCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCC
Q 002736          654 TEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSAD  731 (886)
Q Consensus       654 ~~~~~-h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~D  731 (886)
                      +.+.+ |...|-+++|+   ...+.+|+.|+.|..+|++......      ..+. |...||.++|+++ +.++|+|+.|
T Consensus       253 ~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~------~~~~~H~qeVCgLkws~d-~~~lASGgnD  322 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV------STLQGHRQEVCGLKWSPD-GNQLASGGND  322 (484)
T ss_pred             ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh------hhhhcccceeeeeEECCC-CCeeccCCCc
Confidence            99998 99999999997   5799999999999999999853221      1133 5678999999999 9999999999


Q ss_pred             CeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEEEEE--CCCcEEEEeCCCCCccccCCCceEeecCCCceeEEE
Q 002736          732 HRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSAS--TDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG  807 (886)
Q Consensus       732 g~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~sgs--~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~  807 (886)
                      +.+.|||..... |+..+..|..+|.+++|+  ...+||+|+  .|++|++||+.++.      .+.... -.+.|..|.
T Consensus       323 N~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~------~i~~vd-tgsQVcsL~  394 (484)
T KOG0305|consen  323 NVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA------RIDSVD-TGSQVCSLI  394 (484)
T ss_pred             cceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc------Eecccc-cCCceeeEE
Confidence            999999996655 688999999999999996  788999965  59999999999874      344443 346799999


Q ss_pred             EecCCCEEEEE--cCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          808 LSVWDGYVATG--SETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       808 ~sp~g~~lasg--s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      |++..+-|+++  -.++.|.||+..+.+++..             ..+|...|..++|+|||. .+++|+.|.++++|++
T Consensus       395 Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~-------------l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  395 WSKKYKELLSTHGYSENQITLWKYPSMKLVAE-------------LLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNL  460 (484)
T ss_pred             EcCCCCEEEEecCCCCCcEEEEeccccceeee-------------ecCCcceeEEEEECCCCC-EEEEecccCcEEeccc
Confidence            99998655553  3578999999988666543             356788899999999999 9999999999999987


Q ss_pred             C
Q 002736          886 V  886 (886)
Q Consensus       886 ~  886 (886)
                      .
T Consensus       461 f  461 (484)
T KOG0305|consen  461 F  461 (484)
T ss_pred             c
Confidence            3

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.94  E-value=2.5e-27  Score=253.28  Aligned_cols=200  Identities=14%  Similarity=0.142  Sum_probs=154.1

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +...+...+|++++.+++ ++.   ..+.++++||| .+++|.+++.+....+++..++.++.||+.||+|||++||+||
T Consensus        56 e~~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~  131 (266)
T cd05064          56 EALTLGQFDHSNIVRLEG-VIT---RGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHK  131 (266)
T ss_pred             HHHHHhcCCCCCcCeEEE-EEe---cCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeec
Confidence            334445568999988776 443   34678999999 7889999997655678999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++.++.++++|||.+.........                                                
T Consensus       132 dikp~nili~~~~~~~l~dfg~~~~~~~~~~~------------------------------------------------  163 (266)
T cd05064         132 GLAAHKVLVNSDLVCKISGFRRLQEDKSEAIY------------------------------------------------  163 (266)
T ss_pred             cccHhhEEEcCCCcEEECCCcccccccccchh------------------------------------------------
Confidence            99999999999999999999976432110000                                                


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ......++..|+|||.+.+..++.++|||||||++|||+
T Consensus       164 -----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell  202 (266)
T cd05064         164 -----------------------------------------TTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVM  202 (266)
T ss_pred             -----------------------------------------cccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHh
Confidence                                                     000013466799999999888999999999999999977


Q ss_pred             c----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          267 C----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       267 ~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +    ||...... .....+.....++.+...+..+.+++..||..+|.+||++.++++
T Consensus       203 ~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         203 SYGERPYWDMSGQ-DVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             cCCCCCcCcCCHH-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHH
Confidence            5    66544333 233344444444445556678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.94  E-value=1.2e-27  Score=255.31  Aligned_cols=201  Identities=20%  Similarity=0.234  Sum_probs=156.5

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecccC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHNVR  109 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrDlk  109 (886)
                      +....|++++..++ ++..   .+.+++++|| .|++|.+++......+++..+..++.||+.||.|||+ .||+|+|||
T Consensus        53 l~~~~~~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~  128 (265)
T cd06605          53 LHKCNSPYIVGFYG-AFYN---NGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVK  128 (265)
T ss_pred             HHHCCCCchhhhhe-eeec---CCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCC
Confidence            34456888888766 4433   3678899999 6699999996654678999999999999999999999 999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||.+.......                                                     
T Consensus       129 ~~ni~~~~~~~~~l~d~g~~~~~~~~~-----------------------------------------------------  155 (265)
T cd06605         129 PSNILVNSRGQIKLCDFGVSGQLVNSL-----------------------------------------------------  155 (265)
T ss_pred             HHHEEECCCCCEEEeecccchhhHHHH-----------------------------------------------------
Confidence            999999999999999999874331100                                                     


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                             .....++..|+|||.+.+..++.++|||||||++|+|++  
T Consensus       156 ---------------------------------------~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~  196 (265)
T cd06605         156 ---------------------------------------AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGR  196 (265)
T ss_pred             ---------------------------------------hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                   000256788999999998889999999999999999999  


Q ss_pred             -CCCCCc----hhhHHhHhhccCCCChhhhc-cChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 -PFSTGE----EKTRTMSSLRHRVLPPQLLL-KFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                       ||....    .....+..+.....+..... ..+.+.++|.+||..+|.+||++.+++.||||+..
T Consensus       197 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~~  263 (265)
T cd06605         197 FPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIKKY  263 (265)
T ss_pred             CCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhCchhhcc
Confidence             665442    22223333333322222222 56778899999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.94  E-value=5e-27  Score=255.07  Aligned_cols=205  Identities=15%  Similarity=0.180  Sum_probs=157.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+....|++++..++ .+.   ....++++||| .|++|.+++.+  ..+++.++..++.||+.||.|||++||+|||||
T Consensus        70 ~l~~~~h~~v~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLk  143 (296)
T cd06654          70 VMRENKNPNIVNYLD-SYL---VGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK  143 (296)
T ss_pred             HHHhCCCCCEeeEEE-EEE---eCCEEEEeecccCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            344567888887666 333   24578999999 78999999954  357999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++........                                                    
T Consensus       144 p~Nill~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------------  171 (296)
T cd06654         144 SDNILLGMDGSVKLTDFGFCAQITPEQS----------------------------------------------------  171 (296)
T ss_pred             HHHEEEcCCCCEEECccccchhcccccc----------------------------------------------------
Confidence            9999999999999999998853211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......|++.|+|||.+.+..++.++|||||||++|||++  
T Consensus       172 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~  213 (296)
T cd06654         172 --------------------------------------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE  213 (296)
T ss_pred             --------------------------------------ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCC
Confidence                                                  0011257889999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCC-hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLP-PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                       ||..................+ +......+.+.+++.+||.++|.+||++.++++||||......
T Consensus       214 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~~  279 (296)
T cd06654         214 PPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPL  279 (296)
T ss_pred             CCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhccCCc
Confidence             776554433322222222111 1223355678899999999999999999999999999875443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.94  E-value=4e-27  Score=254.13  Aligned_cols=199  Identities=20%  Similarity=0.218  Sum_probs=155.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC---------------CCcChHHHHHHHHHHHHH
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK---------------RSVDVYECLHIFRQIVEI   94 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~---------------~~l~~~~~~~i~~qi~~~   94 (886)
                      .+....|++++..++ ++.   ..+.++++||| .+++|.++|....               ..+++.+++.++.||+.|
T Consensus        61 ~l~~l~h~~i~~~~~-~~~---~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~a  136 (283)
T cd05048          61 LMSDLQHPNIVCLLG-VCT---KEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAG  136 (283)
T ss_pred             HHHhcCCcccceEEE-EEc---CCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHH
Confidence            345567888888776 443   34568899999 7899999995431               457889999999999999


Q ss_pred             HHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccc
Q 002736           95 VYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLV  174 (886)
Q Consensus        95 l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  174 (886)
                      |.|||++||+||||||+||+++.++.++|+|||++.........                                    
T Consensus       137 l~~lH~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~------------------------------------  180 (283)
T cd05048         137 MEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYY------------------------------------  180 (283)
T ss_pred             HHHHHhCCeeccccccceEEEcCCCcEEECCCcceeeccccccc------------------------------------
Confidence            99999999999999999999999999999999998543211000                                    


Q ss_pred             cCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccc
Q 002736          175 TAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASD  254 (886)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sD  254 (886)
                                                                          .......+++.|+|||.+.+..++.++|
T Consensus       181 ----------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~sD  208 (283)
T cd05048         181 ----------------------------------------------------RVQSKSLLPVRWMPPEAILYGKFTTESD  208 (283)
T ss_pred             ----------------------------------------------------cccCCCcccccccCHHHhccCcCchhhh
Confidence                                                                0001125578899999998888999999


Q ss_pred             cchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          255 IYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       255 IwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      ||||||++|||++    ||..... ...+..+.....++.....++.+.+|+.+||..+|.+||++.|++++
T Consensus       209 v~slG~il~el~~~g~~p~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         209 IWSFGVVLWEIFSYGLQPYYGFSN-QEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCCH-HHHHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            9999999999996    7755443 33445555555555555677889999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=6.5e-25  Score=218.93  Aligned_cols=272  Identities=19%  Similarity=0.295  Sum_probs=223.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEE
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd  646 (886)
                      ....|+++.|+|.+..|++++.||.+++|++...        .....+.|..++.+++|.+  ...+++|+.||.|+.+|
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYD   81 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeeccC--CceEEEeccCceEEEEE
Confidence            4678999999999999999999999999998763        2234557899999999986  78899999999999999


Q ss_pred             CCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEE
Q 002736          647 VSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLA  726 (886)
Q Consensus       647 ~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~  726 (886)
                      +.+++.. .+..|..+|.||.+++ ....+++|+.|++|++||.++       ......+.....|.|+...   ++.|+
T Consensus        82 ln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~-------~~~~~~~d~~kkVy~~~v~---g~~Lv  149 (323)
T KOG1036|consen   82 LNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN-------KVVVGTFDQGKKVYCMDVS---GNRLV  149 (323)
T ss_pred             ecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccc-------cccccccccCceEEEEecc---CCEEE
Confidence            9988764 4456999999999997 778999999999999999998       5556666666789999886   67899


Q ss_pred             EEeCCCeEEEEecCCCCcceEEE-ecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCC---
Q 002736          727 FGSADHRIYYYDLRNSKIPLCTL-IGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN---  801 (886)
Q Consensus       727 ~gs~Dg~I~vwDlr~~~~~~~~~-~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~---  801 (886)
                      +|+.|..|.+||+|+...+.+.. ..-+-.+.+|++. ++.=++.+|.||.|.+=.+....+.  ...-..|+.|..   
T Consensus       150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--~skkyaFkCHr~~~~  227 (323)
T KOG1036|consen  150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--QSKKYAFKCHRLSEK  227 (323)
T ss_pred             EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH--hhhceeEEeeecccC
Confidence            99999999999999988655322 2344567888874 7788899999999988776654211  022456777753   


Q ss_pred             ------ceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEe
Q 002736          802 ------VKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAAN  875 (886)
Q Consensus       802 ------~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~  875 (886)
                            +|++++|+|--+.+|||+.||.|.+||..+.+.+..+.-.             ...|.+++|+-+|. .||.|+
T Consensus       228 ~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-------------~~SI~slsfs~dG~-~LAia~  293 (323)
T KOG1036|consen  228 DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-------------ETSISSLSFSMDGS-LLAIAS  293 (323)
T ss_pred             CceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-------------CCceEEEEeccCCC-eEEEEe
Confidence                  6999999999999999999999999999999988765421             23499999999999 999887


Q ss_pred             C
Q 002736          876 S  876 (886)
Q Consensus       876 ~  876 (886)
                      +
T Consensus       294 s  294 (323)
T KOG1036|consen  294 S  294 (323)
T ss_pred             c
Confidence            5

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.94  E-value=1e-27  Score=221.34  Aligned_cols=204  Identities=16%  Similarity=0.216  Sum_probs=161.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+....|+|+++++.-+.    ....+-+++||+..+|..|.+.-++.++.+.++.++.|++.||.|+|++++.||||||
T Consensus        54 llkelkhknivrl~dvlh----sdkkltlvfe~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkp  129 (292)
T KOG0662|consen   54 LLKELKHKNIVRLHDVLH----SDKKLTLVFEFCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKP  129 (292)
T ss_pred             HHHHhhhcceeehhhhhc----cCceeEEeHHHhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Confidence            344467888888777222    2356788999999999999988888999999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      .|.||+.+|.+|++|||+++.+|.+.-                                                     
T Consensus       130 qnllin~ngelkladfglarafgipvr-----------------------------------------------------  156 (292)
T KOG0662|consen  130 QNLLINRNGELKLADFGLARAFGIPVR-----------------------------------------------------  156 (292)
T ss_pred             ceEEeccCCcEEecccchhhhcCCceE-----------------------------------------------------
Confidence            999999999999999999987764421                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ....-+-|.||++|.++.|.+ |+++.|+||.|||+.||..  
T Consensus       157 -------------------------------------cysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanag  199 (292)
T KOG0662|consen  157 -------------------------------------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG  199 (292)
T ss_pred             -------------------------------------eeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcC
Confidence                                                 011126699999999999976 9999999999999999998  


Q ss_pred             -CCCCCchhhHHhHhhccC-------------------CC---Ch--hhhccC----hhhHHHHHHccCCCCCCCCCHHH
Q 002736          268 -PFSTGEEKTRTMSSLRHR-------------------VL---PP--QLLLKF----PKEASFCLWLLHPEPSGRPKMGE  318 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~-------------------~~---~~--~~~~~~----~~~~~li~~~L~~dP~~Rps~~e  318 (886)
                       |.+++.+-......+...                   .+   |+  .+....    ....++++++|..+|.+|+++++
T Consensus       200 rplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaea  279 (292)
T KOG0662|consen  200 RPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEA  279 (292)
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHH
Confidence             877776655444333110                   01   10  112222    23469999999999999999999


Q ss_pred             HhcCCCCCCC
Q 002736          319 LLQSEFLNEP  328 (886)
Q Consensus       319 il~h~~~~~~  328 (886)
                      +|+||||...
T Consensus       280 alqhpyf~d~  289 (292)
T KOG0662|consen  280 ALQHPYFSDF  289 (292)
T ss_pred             HhcCcccccc
Confidence            9999999864

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.94  E-value=1.9e-28  Score=259.32  Aligned_cols=217  Identities=15%  Similarity=0.183  Sum_probs=173.6

Q ss_pred             CCCCcccccccCceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhh-cCCCCCcChHHHHHHHHHHHHHH
Q 002736           17 DSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWL-DKPKRSVDVYECLHIFRQIVEIV   95 (886)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l-~~~~~~l~~~~~~~i~~qi~~~l   95 (886)
                      ..+++.+|.|...+...  .|+-++.+-| .|   ...+..+++||-..|++.+.| ....+.+++...+.++.||+.||
T Consensus       604 ~kqesqlR~EVaILq~l--~HPGiV~le~-M~---ET~ervFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~AL  677 (888)
T KOG4236|consen  604 TKQESQLRNEVAILQNL--HHPGIVNLEC-MF---ETPERVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVAL  677 (888)
T ss_pred             CchHHHHHHHHHHHHhc--CCCCeeEEEE-ee---cCCceEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            34456678886655444  4555544444 22   245678889999777766655 55668899999999999999999


Q ss_pred             HhhcccCeeecccCCcceeec---cCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccc
Q 002736           96 YAAHSQGIVVHNVRPSCFVMS---SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQ  172 (886)
Q Consensus        96 ~~lHs~giiHrDlkP~NIll~---~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  172 (886)
                      .|||-+||+|+||||+||||.   +.-++|+||||+|+.++..++                                   
T Consensus       678 r~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksF-----------------------------------  722 (888)
T KOG4236|consen  678 RYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSF-----------------------------------  722 (888)
T ss_pred             HHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhh-----------------------------------
Confidence            999999999999999999995   445899999999987764432                                   


Q ss_pred             cccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcc
Q 002736          173 LVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCA  252 (886)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~  252 (886)
                                                                              ....+|||.|+|||++....|..+
T Consensus       723 --------------------------------------------------------RrsVVGTPAYLaPEVLrnkGyNrS  746 (888)
T KOG4236|consen  723 --------------------------------------------------------RRSVVGTPAYLAPEVLRNKGYNRS  746 (888)
T ss_pred             --------------------------------------------------------hhhhcCCccccCHHHHhhcccccc
Confidence                                                                    112499999999999999999999


Q ss_pred             cccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          253 SDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       253 sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      -|+||.|||+|--|+   ||..+++....+....--..+..|...++.+.+||..+|+..-.+|.+.+..|.|||++..+
T Consensus       747 LDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~yq  826 (888)
T KOG4236|consen  747 LDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQ  826 (888)
T ss_pred             ccceeeeEEEEEEecccccCCCccchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhhcch
Confidence            999999999999888   78666665555554444455678888999999999999999999999999999999999764


Q ss_pred             C
Q 002736          330 D  330 (886)
Q Consensus       330 ~  330 (886)
                      .
T Consensus       827 ~  827 (888)
T KOG4236|consen  827 T  827 (888)
T ss_pred             H
Confidence            3

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=8e-27  Score=250.51  Aligned_cols=203  Identities=17%  Similarity=0.196  Sum_probs=157.3

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +....|++++..++ .+.   ....+++++|| .+++|.+++...  .+++..++.++.||+.||.|||++||+|+||+|
T Consensus        53 l~~l~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p  126 (274)
T cd06609          53 LSQCRSPYITKYYG-SFL---KGSKLWIIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLHEEGKIHRDIKA  126 (274)
T ss_pred             HHHcCCCCeeeeeE-EEE---ECCeEEEEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCH
Confidence            44456888877666 333   23678899998 789999999653  789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++........                                                     
T Consensus       127 ~ni~i~~~~~~~l~d~g~~~~~~~~~~-----------------------------------------------------  153 (274)
T cd06609         127 ANILLSEEGDVKLADFGVSGQLTSTMS-----------------------------------------------------  153 (274)
T ss_pred             HHEEECCCCCEEEcccccceeeccccc-----------------------------------------------------
Confidence            999999999999999999855422100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           ......+++.|+|||.+.+..++.++|||||||++|||++   
T Consensus       154 -------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~  196 (274)
T cd06609         154 -------------------------------------KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEP  196 (274)
T ss_pred             -------------------------------------ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                 0011267888999999998889999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhc-cChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLL-KFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                      ||........ ...+.....+..... .++.+.+++.+||..+|.+||+++++++||||......
T Consensus       197 p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~~~~  260 (274)
T cd06609         197 PLSDLHPMRV-LFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAKKT  260 (274)
T ss_pred             CcccCchHHH-HHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCCCcc
Confidence            6654443222 222222222222222 45678899999999999999999999999999875443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.94  E-value=5e-28  Score=275.77  Aligned_cols=214  Identities=22%  Similarity=0.312  Sum_probs=156.4

Q ss_pred             cccccCceeecccccccCCCCCCcccccc-ccC--CceEEEEeeCC-cchhhhhcCC-CCCcChHHHHHHHHHHHHHHHh
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENE-AAI--DPFVHAIEWGD-VSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYA   97 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~i~~e~~g-~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~   97 (886)
                      .+.|.+...+.. +|+|+|.+++.-.... ...  -.++|.||||. ++|-++|++. ...|++.++++||.|+++||.+
T Consensus        81 v~~EI~~MK~L~-gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~  159 (738)
T KOG1989|consen   81 VKREIDIMKLLS-GHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAA  159 (738)
T ss_pred             HHHHHHHHHHhc-CCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            466655554443 7999998877222222 222  35789999955 8999999632 3459999999999999999999


Q ss_pred             hcccC--eeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhccccccccccc
Q 002736           98 AHSQG--IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVT  175 (886)
Q Consensus        98 lHs~g--iiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  175 (886)
                      ||.+.  |||||||-|||||+.+|+.||||||.+.-.......                      ...            
T Consensus       160 mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~----------------------~~e------------  205 (738)
T KOG1989|consen  160 MHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTS----------------------AQE------------  205 (738)
T ss_pred             HhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCcc----------------------HHH------------
Confidence            99998  999999999999999999999999998543211000                      000            


Q ss_pred             CCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---CCCCCcc
Q 002736          176 APTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---GAPVSCA  252 (886)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~  252 (886)
                                           +.++|                          .......|+.|+|||.+.   +.+++.|
T Consensus       206 ---------------------~~~ve--------------------------~eI~k~TTp~YRsPEMIDlysg~pI~eK  238 (738)
T KOG1989|consen  206 ---------------------VNYVE--------------------------EEIEKYTTPQYRSPEMIDLYSGLPIGEK  238 (738)
T ss_pred             ---------------------HHHHH--------------------------HHHHhhCCccccChHHHhhhcCCCCcch
Confidence                                 00000                          001124489999999874   5679999


Q ss_pred             cccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          253 SDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       253 sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      +|||+|||+||-|+.   ||...-.    ..++....-.|.+...+..+.+||..||+.||.+||++.|++.+
T Consensus       239 sDIWALGclLYkLCy~t~PFe~sg~----laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  239 SDIWALGCLLYKLCYFTTPFEESGK----LAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             hHHHHHHHHHHHHHHhCCCcCcCcc----eeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence            999999999999987   8865422    23344444445556677889999999999999999999999863

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.94  E-value=5.3e-27  Score=253.43  Aligned_cols=205  Identities=16%  Similarity=0.181  Sum_probs=155.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|++++...+ .+.   ..+.++++||| .+++|.+++... ...+++..+..++.||+.||.|||++||+|||
T Consensus        52 ~il~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~d  127 (285)
T cd05632          52 QILEKVNSQFVVNLAY-AYE---TKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRD  127 (285)
T ss_pred             HHHHHcCCcCceeEEE-EEe---cCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecC
Confidence            3445567788777655 222   34578899998 788999888432 34689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++..+.++++|||++.......                                                   
T Consensus       128 ikp~Nili~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------------  156 (285)
T cd05632         128 LKPENILLDDYGHIRISDLGLAVKIPEGE---------------------------------------------------  156 (285)
T ss_pred             CCHHHEEECCCCCEEEecCCcceecCCCC---------------------------------------------------
Confidence            99999999999999999999884321100                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......|+..|+|||.+.+..++.++|||||||++|||++
T Consensus       157 ----------------------------------------~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~  196 (285)
T cd05632         157 ----------------------------------------SIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIE  196 (285)
T ss_pred             ----------------------------------------cccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHh
Confidence                                                    0011267999999999998889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhh--ccCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCCc
Q 002736          268 ---PFSTGEEKTRTMSSL--RHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEPR  329 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~~  329 (886)
                         ||.............  .....+.......+.+.+|+.+||..||.+||+     +.+++.|+||....
T Consensus       197 g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~  268 (285)
T cd05632         197 GQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMN  268 (285)
T ss_pred             CCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcCC
Confidence               776544322211111  111111222345567889999999999999999     88999999998763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.94  E-value=2.2e-27  Score=257.37  Aligned_cols=206  Identities=18%  Similarity=0.283  Sum_probs=157.8

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .|++|.+++..  ..+++.++..++.||+.||+|||++||+||||
T Consensus        71 ~~l~~l~h~~ii~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dl  144 (292)
T cd06658          71 VIMRDYHHENVVDMYN-SYL---VGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLSVLRALSYLHNQGVIHRDI  144 (292)
T ss_pred             HHHHhCCCCcHHHHHH-hee---cCCeEEEEEeCCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeecCC
Confidence            3455567888877666 222   34678999999 68899998854  35899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++........                                                   
T Consensus       145 kp~Nill~~~~~~kL~dfg~~~~~~~~~~---------------------------------------------------  173 (292)
T cd06658         145 KSDSILLTSDGRIKLSDFGFCAQVSKEVP---------------------------------------------------  173 (292)
T ss_pred             CHHHEEEcCCCCEEEccCcchhhcccccc---------------------------------------------------
Confidence            99999999999999999998843211100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......|+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       174 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g  214 (292)
T cd06658         174 ---------------------------------------KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDG  214 (292)
T ss_pred             ---------------------------------------cCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhC
Confidence                                                   0011367889999999988889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCC--hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCch
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLP--PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~  332 (886)
                        ||...... ..+..+.....+  +......+.+.+++.+||..||.+|||+.++++||||.....+.
T Consensus       215 ~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~~~~~  282 (292)
T cd06658         215 EPPYFNEPPL-QAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPPS  282 (292)
T ss_pred             CCCCCCCCHH-HHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhhccCCcc
Confidence              77544332 223333222111  11223456778999999999999999999999999999765544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.94  E-value=1.8e-26  Score=252.79  Aligned_cols=202  Identities=17%  Similarity=0.173  Sum_probs=156.8

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++.+..++ ++.+   .+..+++|||..++|.+++......+++.+++.++.||+.||.|||++||+|+|||
T Consensus        73 ~~l~~l~h~~iv~~~~-~~~~---~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~  148 (313)
T cd06633          73 KFLQQLKHPNTIEYKG-CYLK---EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK  148 (313)
T ss_pred             HHHHhCCCCCCccEEE-EEEe---CCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            3455567888888776 4433   45688999998889999886655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++......                                                      
T Consensus       149 p~nili~~~~~~kL~dfg~~~~~~~~------------------------------------------------------  174 (313)
T cd06633         149 AGNILLTEPGQVKLADFGSASKSSPA------------------------------------------------------  174 (313)
T ss_pred             hhhEEECCCCCEEEeecCCCcccCCC------------------------------------------------------
Confidence            99999999999999999987321100                                                      


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---CCCCCcccccchHHHHHHHHh
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---GAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                              ....|+..|+|||.+.   ...++.++|||||||++|||+
T Consensus       175 ----------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~  214 (313)
T cd06633         175 ----------------------------------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA  214 (313)
T ss_pred             ----------------------------------------CCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHH
Confidence                                                    0126788899999984   355889999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      +   ||............................+.+|+.+||+++|.+||++.++++||||...+
T Consensus       215 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~  280 (313)
T cd06633         215 ERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDR  280 (313)
T ss_pred             hCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence            8   67665544433333322221111222345678999999999999999999999999999754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.94  E-value=6.9e-27  Score=249.24  Aligned_cols=202  Identities=17%  Similarity=0.195  Sum_probs=157.1

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+.   ....++++||| .|++|.++|.+. ..+++..++.++.||+.||.|||++|++|+|||
T Consensus        46 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~  120 (262)
T cd05572          46 ILEECNHPFIVKLYR-TFK---DKKYIYMLMEYCLGGELWTILRDR-GLFDEYTARFYIACVVLAFEYLHNRGIIYRDLK  120 (262)
T ss_pred             HHHhCCCCCEeeeee-eEE---cCCccEEEEecCCCCcHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence            345567888888776 333   34678899999 889999999654 468999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++.......                                                     
T Consensus       121 ~~nilv~~~~~~~l~df~~~~~~~~~~-----------------------------------------------------  147 (262)
T cd05572         121 PENLLLDSNGYVKLVDFGFAKKLKSGQ-----------------------------------------------------  147 (262)
T ss_pred             HHHEEEcCCCCEEEeeCCcccccCccc-----------------------------------------------------
Confidence            999999999999999999885432110                                                     


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......|++.|+|||.+.+..++.++|||||||++|||++  
T Consensus       148 --------------------------------------~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~  189 (262)
T cd05572         148 --------------------------------------KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGR  189 (262)
T ss_pred             --------------------------------------ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCC
Confidence                                                  0011256888999999988889999999999999999999  


Q ss_pred             -CCCCCch-hhHHhHhhc-cCCCChhhhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCC
Q 002736          268 -PFSTGEE-KTRTMSSLR-HRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~  328 (886)
                       ||..... ....+..+. ....+..+....+.+.+++.+||..+|.+||+     +.|+++||||+..
T Consensus       190 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~  258 (262)
T cd05572         190 PPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGF  258 (262)
T ss_pred             CCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhcChhhhCC
Confidence             7755441 222222222 12222223334678889999999999999999     9999999999864

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.5e-27  Score=249.78  Aligned_cols=201  Identities=17%  Similarity=0.205  Sum_probs=154.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++.+++ ..   ...+.++++||| .|++|.+++.+....+++.++..++.||+.||.|||++||+|+||
T Consensus        52 ~~l~~~~h~~i~~~~~-~~---~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl  127 (262)
T cd06613          52 SMLKECRHPNIVAYFG-SY---LRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDI  127 (262)
T ss_pred             HHHHhCCCCChhceEE-EE---EeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCC
Confidence            3455678999988776 33   235678999999 778999999765567999999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++........                                                   
T Consensus       128 ~p~ni~i~~~~~~~l~d~g~~~~~~~~~~---------------------------------------------------  156 (262)
T cd06613         128 KGANILLTEDGDVKLADFGVSAQLTATIA---------------------------------------------------  156 (262)
T ss_pred             ChhhEEECCCCCEEECccccchhhhhhhh---------------------------------------------------
Confidence            99999999999999999999853311100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC---CCCcccccchHHHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA---PVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~---~~s~~sDIwSlGvil~eL  265 (886)
                                                             ......++..|+|||.+.+.   .++.++|||||||++|||
T Consensus       157 ---------------------------------------~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~  197 (262)
T cd06613         157 ---------------------------------------KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIEL  197 (262)
T ss_pred             ---------------------------------------ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHH
Confidence                                                   00112678889999999876   789999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCCChh---hhccChhhHHHHHHccCCCCCCCCCHHHHhcCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVLPPQ---LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEF  324 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~  324 (886)
                      ++   ||..................++.   ....++.+.+|+.+||..+|..||++.+++.|+|
T Consensus       198 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         198 AELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             HhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcCCC
Confidence            99   66544433322222222111111   1223456789999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.94  E-value=6.2e-27  Score=256.11  Aligned_cols=210  Identities=18%  Similarity=0.217  Sum_probs=155.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++..++ ++.+ ...+.++++|||.+++|.+++......+++.+++.++.||+.||.|||++||+|||||
T Consensus        58 ~~l~~l~h~~i~~~~~-~~~~-~~~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  135 (309)
T cd07845          58 TLLLNLRHPNIVELKE-VVVG-KHLDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLK  135 (309)
T ss_pred             HHHHhCCCCCCcceEE-EEec-CCCCeEEEEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            3445567888887666 3332 2345689999998889999997655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++........                                                    
T Consensus       136 p~nil~~~~~~~kL~dfg~~~~~~~~~~----------------------------------------------------  163 (309)
T cd07845         136 VSNLLLTDKGCLKIADFGLARTYGLPAK----------------------------------------------------  163 (309)
T ss_pred             HHHEEECCCCCEEECccceeeecCCccC----------------------------------------------------
Confidence            9999999999999999999854421100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ......++++|+|||.+.+ ..++.++|||||||++|||++ 
T Consensus       164 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g  205 (309)
T cd07845         164 --------------------------------------PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAH  205 (309)
T ss_pred             --------------------------------------CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhC
Confidence                                                  0001145788999999876 448999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhcc--C------------------CCCh--------hhhccChhhHHHHHHccCCCCCCCCCHH
Q 002736          268 --PFSTGEEKTRTMSSLRH--R------------------VLPP--------QLLLKFPKEASFCLWLLHPEPSGRPKMG  317 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~--~------------------~~~~--------~~~~~~~~~~~li~~~L~~dP~~Rps~~  317 (886)
                        ||...............  .                  ..+.        .....++.+.+||.+||++||++|||+.
T Consensus       206 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~  285 (309)
T cd07845         206 KPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAE  285 (309)
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHH
Confidence              56443332222111110  0                  0000        0112356778999999999999999999


Q ss_pred             HHhcCCCCCCCcCc
Q 002736          318 ELLQSEFLNEPRDS  331 (886)
Q Consensus       318 eil~h~~~~~~~~~  331 (886)
                      |+++||||.....+
T Consensus       286 ~il~h~~f~~~~~~  299 (309)
T cd07845         286 EALESSYFKEKPLP  299 (309)
T ss_pred             HHhcChhhccCCCC
Confidence            99999999876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.9e-27  Score=252.39  Aligned_cols=203  Identities=20%  Similarity=0.255  Sum_probs=156.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+.   ..+.++++||| .+++|.+++.+....+++.+++.++.||+.||.|||++||+|+|||
T Consensus        55 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~  130 (280)
T cd06611          55 ILSECKHPNIVGLYE-AYF---YENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLK  130 (280)
T ss_pred             HHHhCCCCceeEEEE-EEe---cCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            445567888888777 333   34678899999 7889999997666679999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++........                                                    
T Consensus       131 p~nili~~~~~~~l~d~g~~~~~~~~~~----------------------------------------------------  158 (280)
T cd06611         131 AGNILLTLDGDVKLADFGVSAKNKSTLQ----------------------------------------------------  158 (280)
T ss_pred             hhhEEECCCCCEEEccCccchhhccccc----------------------------------------------------
Confidence            9999999999999999998743211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-----CCCCCcccccchHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~s~~sDIwSlGvil~e  264 (886)
                                                            ......|++.|+|||.+.     +..++.++|||||||++||
T Consensus       159 --------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~  200 (280)
T cd06611         159 --------------------------------------KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIE  200 (280)
T ss_pred             --------------------------------------ccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHH
Confidence                                                  011236788999999975     3447889999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCC--hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLP--PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      |++   ||..... ...+..+.....+  ......+..+.+++.+||+.+|.+||++.++++||||...
T Consensus       201 l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (280)
T cd06611         201 LAQMEPPHHELNP-MRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQ  268 (280)
T ss_pred             HHhCCCCcccCCH-HHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcChhhccc
Confidence            999   6644433 2333333322221  1122345678899999999999999999999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.94  E-value=3.8e-27  Score=250.12  Aligned_cols=207  Identities=16%  Similarity=0.186  Sum_probs=156.8

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|++|.+.  +...+|++++..++ .+.+   ...+++++|| .+++|.+++......+++.+++.++.||+.||.|||+
T Consensus        44 ~~~~e~~~--~~~l~~~~i~~~~~-~~~~---~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~  117 (256)
T cd06612          44 EIIKEISI--LKQCDSPYIVKYYG-SYFK---NTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHS  117 (256)
T ss_pred             HHHHHHHH--HHhCCCCcEeeeee-eeec---CCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34444433  33348888888776 3332   3678899999 7889999997666788999999999999999999999


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      .||+|+||+|+||+++.++.++++|||++........                                           
T Consensus       118 ~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~-------------------------------------------  154 (256)
T cd06612         118 NKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA-------------------------------------------  154 (256)
T ss_pred             CCcccCCCCcceEEECCCCcEEEcccccchhcccCcc-------------------------------------------
Confidence            9999999999999999999999999999854321100                                           


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     ......|+..|+|||.+.+..++.++|||||||
T Consensus       155 -----------------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~  187 (256)
T cd06612         155 -----------------------------------------------KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGI  187 (256)
T ss_pred             -----------------------------------------------ccccccCCccccCHHHHhcCCCCchhhHHHHHH
Confidence                                                           001125678899999998888999999999999


Q ss_pred             HHHHHhc---CCCCCchhhHHhHhhccCCCC--hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          261 LLFELFC---PFSTGEEKTRTMSSLRHRVLP--PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       261 il~eLl~---pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ++|+|++   ||......... ........+  .........+.+++.+||..+|.+||++.|+|+||||
T Consensus       188 il~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         188 TAIEMAEGKPPYSDIHPMRAI-FMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             HHHHHHhCCCCCCCcchhhhh-hhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence            9999999   66543332222 222111111  1122344678899999999999999999999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.94  E-value=4.2e-27  Score=260.14  Aligned_cols=208  Identities=15%  Similarity=0.161  Sum_probs=152.0

Q ss_pred             ccccCCCCCCcccc-ccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCE-NEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~-~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++.+++ .+. .......++++||+.+++|.+++... ..+++.+++.++.||+.||.|||++||+||||||+|||
T Consensus        60 ~h~~iv~~~~-~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nil  137 (332)
T cd07857          60 GHKNITCLYD-MDIVFPGNFNELYLYEELMEADLHQIIRSG-QPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLL  137 (332)
T ss_pred             CCCChheeee-eeeeccccCCcEEEEEecccCCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeE
Confidence            5888887666 322 11234567899999888999999554 57899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+||+|||++..........                                                       
T Consensus       138 i~~~~~~kl~Dfg~a~~~~~~~~~~-------------------------------------------------------  162 (332)
T cd07857         138 VNADCELKICDFGLARGFSENPGEN-------------------------------------------------------  162 (332)
T ss_pred             EcCCCCEEeCcCCCceecccccccc-------------------------------------------------------
Confidence            9999999999999986442110000                                                       


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc---CCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                     .......+|++.|+|||.+.+ ..++.++|||||||++|+|++   ||.
T Consensus       163 -------------------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~  211 (332)
T cd07857         163 -------------------------------AGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFK  211 (332)
T ss_pred             -------------------------------cccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCC
Confidence                                           000112378999999998766 458999999999999999998   554


Q ss_pred             CCchhhHHhHhhc--------------------------cC---CCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          271 TGEEKTRTMSSLR--------------------------HR---VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       271 ~~~~~~~~~~~~~--------------------------~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ...........+.                          ..   .++.......+.+.+|+.+||++||.+|||+.+++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         212 GKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             CCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            3322111100000                          00   001111223567889999999999999999999999


Q ss_pred             CCCCCCCcCc
Q 002736          322 SEFLNEPRDS  331 (886)
Q Consensus       322 h~~~~~~~~~  331 (886)
                      ||||.....+
T Consensus       292 ~~~~~~~~~~  301 (332)
T cd07857         292 HPYLAIWHDP  301 (332)
T ss_pred             ChhhhhhcCc
Confidence            9999765433

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=243.02  Aligned_cols=256  Identities=21%  Similarity=0.340  Sum_probs=210.4

Q ss_pred             CCCCCEE---EEEEcC-CCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCc
Q 002736          566 NSSNLVC---SLSFDR-DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGV  641 (886)
Q Consensus       566 ~h~~~V~---sl~f~~-d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~  641 (886)
                      .|...|.   ++..+. ++++|+|||.||.|++|+.......... .+......|...|+.+.... .++.|+|+|.|-+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~-~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtT   96 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST-PYIASMEHHSDWVNDIILCG-NGKTLISASSDTT   96 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCccc-chhhhhhhhHhHHhhHHhhc-CCCceEEecCCce
Confidence            3555565   566664 6778999999999999998763322111 12233345888999988876 5789999999999


Q ss_pred             EEEEECCCc--eEEEEecccCCcEEEEEE-ccCCCCEEEEEeCCCcEEEEeCchhhh--hhccCc-eeeee--ecCCCeE
Q 002736          642 VQVWDVSRS--QVLTEMREHERRVWSIDF-SSADPTLLASGSDDGSVKLWSINQAIL--LLHLGV-SIGTI--KTKANVC  713 (886)
Q Consensus       642 V~iWd~~t~--~~~~~~~~h~~~v~~v~~-~p~~~~~l~sgs~Dg~v~lwd~~~~~~--~~~~~~-~~~~~--~~~~~v~  713 (886)
                      |++|+...+  -++.++..|.+-|.|+++ .+ +..++|+|+-|+.|.|||+++...  +..+.. ....+  ..+..|+
T Consensus        97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY  175 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY  175 (735)
T ss_pred             EEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence            999999877  577888999999999999 54 888999999999999999997522  111111 11111  2356799


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCC
Q 002736          714 CVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTP  792 (886)
Q Consensus       714 ~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~  792 (886)
                      +++.++. +..|++|+..+.+++||-|+.+. +..++||...|..+..+ ||..++|||.||+|++||+...      ++
T Consensus       176 SLA~N~t-~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------rC  247 (735)
T KOG0308|consen  176 SLAMNQT-GTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------RC  247 (735)
T ss_pred             eeecCCc-ceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc------ce
Confidence            9999998 88999999999999999999985 88889999999999997 9999999999999999999987      45


Q ss_pred             ceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCC
Q 002736          793 LHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFP  832 (886)
Q Consensus       793 ~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~  832 (886)
                      +.++..|+..|+++..+|+=.++.+|+.||.|+.=|+.+.
T Consensus       248 l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  248 LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9999999999999999999999999999999999998874

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.94  E-value=7.3e-27  Score=255.30  Aligned_cols=202  Identities=16%  Similarity=0.131  Sum_probs=155.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++...+ +|.+   .+..+++|||..++|.+++......+++.++..++.||+.||.|||++||+||||+
T Consensus        67 ~~l~~l~h~niv~~~~-~~~~---~~~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~  142 (307)
T cd06607          67 RFLQQLRHPNTIEYKG-CYLR---EHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIK  142 (307)
T ss_pred             HHHHhCCCCCEEEEEE-EEEe---CCeEEEEHHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC
Confidence            3455678888888766 5543   45688999998788888886544678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++......                                                      
T Consensus       143 p~nIl~~~~~~~kL~dfg~~~~~~~~------------------------------------------------------  168 (307)
T cd06607         143 AGNILLTEPGTVKLADFGSASLVSPA------------------------------------------------------  168 (307)
T ss_pred             cccEEECCCCCEEEeecCcceecCCC------------------------------------------------------
Confidence            99999999999999999987432100                                                      


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---CCCCCcccccchHHHHHHHHh
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---GAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                              ....+++.|+|||.+.   ...++.++|||||||++|||+
T Consensus       169 ----------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~  208 (307)
T cd06607         169 ----------------------------------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA  208 (307)
T ss_pred             ----------------------------------------CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHH
Confidence                                                    0125677899999884   345889999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCChh-hhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLPPQ-LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      +   ||........... +.....+.. ....+..+.+++.+||..+|.+||++.+++.||||.....
T Consensus       209 tg~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~  275 (307)
T cd06607         209 ERKPPLFNMNAMSALYH-IAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRERP  275 (307)
T ss_pred             cCCCCCCCccHHHHHHH-HhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChhhcccCC
Confidence            9   6655443333322 222222211 1224467789999999999999999999999999987543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.94  E-value=7.3e-27  Score=252.38  Aligned_cols=205  Identities=18%  Similarity=0.312  Sum_probs=158.8

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+.   ..+..++++|| .|++|.+++..  ..+++.+++.++.||+.||.|||++||+||||+
T Consensus        69 ~l~~~~h~~vv~~~~-~~~---~~~~~~~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~  142 (285)
T cd06648          69 IMRDYQHPNIVEMYS-SYL---VGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIK  142 (285)
T ss_pred             HHHHcCCCChheEEE-EEE---cCCeEEEEEeccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            444567888888776 222   34667888888 78999999965  468999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||.+........                                                    
T Consensus       143 p~Nil~~~~~~~~l~d~g~~~~~~~~~~----------------------------------------------------  170 (285)
T cd06648         143 SDSILLTSDGRVKLSDFGFCAQVSKEVP----------------------------------------------------  170 (285)
T ss_pred             hhhEEEcCCCcEEEcccccchhhccCCc----------------------------------------------------
Confidence            9999999999999999998743211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......|++.|+|||.+.+..++.++|||||||++|||++  
T Consensus       171 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~  212 (285)
T cd06648         171 --------------------------------------RRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGE  212 (285)
T ss_pred             --------------------------------------ccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCC
Confidence                                                  0011267889999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCCh--hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCch
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPP--QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~  332 (886)
                       ||..... ...+..+.....+.  .....++.+.+|+.+||..+|.+||++.++++||||.....+.
T Consensus       213 ~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~~~  279 (285)
T cd06648         213 PPYFNEPP-LQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFLAKAGPPS  279 (285)
T ss_pred             CCCcCCCH-HHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHccCcccccCCCcc
Confidence             7755433 33333333332211  1222456788999999999999999999999999998866543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.94  E-value=4.7e-27  Score=255.26  Aligned_cols=203  Identities=15%  Similarity=0.184  Sum_probs=157.0

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+....|++++..++ .+.   ..+.+++++|| .|++|.+++.+  ..+++.++..++.||+.||.|||++||+|+|||
T Consensus        69 ~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~  142 (296)
T cd06655          69 VMKELKNPNIVNFLD-SFL---VGDELFVVMEYLAGGSLTDVVTE--TCMDEAQIAAVCRECLQALEFLHANQVIHRDIK  142 (296)
T ss_pred             HHHhcCCCceeeeee-eEe---cCceEEEEEEecCCCcHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            344567888887666 443   34678899999 88999999854  358999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++........                                                    
T Consensus       143 p~Nili~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------------  170 (296)
T cd06655         143 SDNVLLGMDGSVKLTDFGFCAQITPEQS----------------------------------------------------  170 (296)
T ss_pred             HHHEEECCCCCEEEccCccchhcccccc----------------------------------------------------
Confidence            9999999999999999998854321100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......|+..|+|||.+.+..++.++|||||||++|+|++  
T Consensus       171 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~  212 (296)
T cd06655         171 --------------------------------------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGE  212 (296)
T ss_pred             --------------------------------------cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                  0001257888999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCC-CChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          268 -PFSTGEEKTRTMSSLRHRV-LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                       ||................. .........+.+.+|+.+||..||.+||++.++++||||....
T Consensus       213 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~~~  276 (296)
T cd06655         213 PPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAK  276 (296)
T ss_pred             CCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhhChHhhhcc
Confidence             7765544333222222111 1122334567788999999999999999999999999998644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.94  E-value=1.1e-26  Score=250.91  Aligned_cols=203  Identities=18%  Similarity=0.238  Sum_probs=153.1

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+.+.+|++++..++ ++.   ..+.++++|||..++|..++.. ....+++..++.++.||+.||+|||++||+|+|
T Consensus        50 ~~~l~~l~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~  125 (284)
T cd07860          50 ISLLKELNHPNIVKLLD-VIH---TENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRD  125 (284)
T ss_pred             HHHHHhcCCCCCcchhh-hcc---cCCcEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCC
Confidence            33455567899888777 443   3567899999977899998854 345789999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |+|+||+++.++.+|++|||++...+....                                                  
T Consensus       126 l~p~nill~~~~~~~l~dfg~~~~~~~~~~--------------------------------------------------  155 (284)
T cd07860         126 LKPQNLLINTEGAIKLADFGLARAFGVPVR--------------------------------------------------  155 (284)
T ss_pred             CCHHHEEECCCCCEEEeeccchhhcccCcc--------------------------------------------------
Confidence            999999999999999999999854321100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHh
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELF  266 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl  266 (886)
                                                              ......++++|+|||.+.+.. ++.++|||||||++|||+
T Consensus       156 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~  195 (284)
T cd07860         156 ----------------------------------------TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV  195 (284)
T ss_pred             ----------------------------------------ccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHH
Confidence                                                    001114678899999987754 688999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCC---------------------------hhhhccChhhHHHHHHccCCCCCCCCCH
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLP---------------------------PQLLLKFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~li~~~L~~dP~~Rps~  316 (886)
                      +   ||..................+                           .......+.+.++|.+||..||.+||++
T Consensus       196 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~  275 (284)
T cd07860         196 TRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISA  275 (284)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCH
Confidence            9   665544332222211110000                           0112245667799999999999999999


Q ss_pred             HHHhcCCCC
Q 002736          317 GELLQSEFL  325 (886)
Q Consensus       317 ~eil~h~~~  325 (886)
                      .++++||||
T Consensus       276 ~~~l~~~~f  284 (284)
T cd07860         276 KAALAHPFF  284 (284)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.94  E-value=7.4e-27  Score=251.38  Aligned_cols=201  Identities=17%  Similarity=0.192  Sum_probs=153.0

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++.+.. .+.   ..+.++++||| .|++|.+++.+. ..+++.+++.|+.||+.||.|||++||+||||||
T Consensus        51 ~~~~~~~~i~~~~~-~~~---~~~~~~~v~e~~~g~~L~~~l~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p  125 (278)
T cd05606          51 VSTGDCPFIVCMSY-AFH---TPDKLSFILDLMNGGDLHYHLSQH-GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKP  125 (278)
T ss_pred             HHhCCCCcEeeeee-eee---cCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCH
Confidence            33457777776555 222   34678899999 889999999654 5789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.+|++|||++.......                                                      
T Consensus       126 ~nili~~~~~~kl~dfg~~~~~~~~~------------------------------------------------------  151 (278)
T cd05606         126 ANILLDEHGHVRISDLGLACDFSKKK------------------------------------------------------  151 (278)
T ss_pred             HHEEECCCCCEEEccCcCccccCccC------------------------------------------------------
Confidence            99999999999999999985331110                                                      


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            .....|+..|+|||.+.+. .++.++||||+||++|||++  
T Consensus       152 --------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~  193 (278)
T cd05606         152 --------------------------------------PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGH  193 (278)
T ss_pred             --------------------------------------CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCC
Confidence                                                  0012678899999999754 58999999999999999998  


Q ss_pred             -CCCCCchhh-HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCCc
Q 002736          268 -PFSTGEEKT-RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       268 -pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~~  329 (886)
                       ||....... ...........+..+...++.+.+++.+||..+|.+||     ++.++++||||....
T Consensus       194 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~  262 (278)
T cd05606         194 SPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLD  262 (278)
T ss_pred             CCCCCCCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCCC
Confidence             775442111 11111111111222233467889999999999999999     999999999998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.94  E-value=1.3e-26  Score=249.65  Aligned_cols=201  Identities=18%  Similarity=0.202  Sum_probs=151.9

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+..   .+.++++||| .+++|..+     ..+++..+..++.||+.||.|||+.||+|+|||
T Consensus        52 ~l~~l~h~~iv~~~~-~~~~---~~~~~lv~e~~~~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk  122 (279)
T cd06619          52 ILYKCDSPYIIGFYG-AFFV---ENRISICTEFMDGGSLDVY-----RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVK  122 (279)
T ss_pred             HHHhCCCCCeeeEEE-EEEE---CCEEEEEEecCCCCChHHh-----hcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCC
Confidence            455668888888777 3432   4567889999 77777654     246889999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.++++|||++......                                                      
T Consensus       123 p~Nill~~~~~~~l~dfg~~~~~~~~------------------------------------------------------  148 (279)
T cd06619         123 PSNMLVNTRGQVKLCDFGVSTQLVNS------------------------------------------------------  148 (279)
T ss_pred             HHHEEECCCCCEEEeeCCcceecccc------------------------------------------------------
Confidence            99999999999999999998533111                                                      


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            .....+|+..|+|||.+.+..++.++|||||||++|||++  
T Consensus       149 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~  190 (279)
T cd06619         149 --------------------------------------IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGR  190 (279)
T ss_pred             --------------------------------------cccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCC
Confidence                                                  0011267889999999998889999999999999999998  


Q ss_pred             -CCCCCchh------hHHhHhhccCCCCh-hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCch
Q 002736          268 -PFSTGEEK------TRTMSSLRHRVLPP-QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       268 -pf~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~  332 (886)
                       ||......      ......+.....+. ......+++.+|+.+||+.+|.+||+++|+++||||.......
T Consensus       191 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~~~~~~  263 (279)
T cd06619         191 FPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMDHPFIVQYNDGN  263 (279)
T ss_pred             CCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcCcccccccCcc
Confidence             76432211      11111111111111 1123456788999999999999999999999999998764433

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.94  E-value=5.9e-27  Score=254.84  Aligned_cols=207  Identities=17%  Similarity=0.251  Sum_probs=155.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+...+|++++..++ ++.+   .+.++++|||.+++|.+++......+++.+++.++.||++||.|||++||+|+||||
T Consensus        55 ~l~~~~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p  130 (298)
T cd07841          55 LLQELKHPNIIGLLD-VFGH---KSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKP  130 (298)
T ss_pred             HHhhcCCCCChhhhh-eeec---CCEEEEEEcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCh
Confidence            445566888888776 4433   567899999999999999966544789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++|+|||++........                                                     
T Consensus       131 ~nill~~~~~~~l~dfg~~~~~~~~~~-----------------------------------------------------  157 (298)
T cd07841         131 NNLLIASDGVLKLADFGLARSFGSPNR-----------------------------------------------------  157 (298)
T ss_pred             hhEEEcCCCCEEEccceeeeeccCCCc-----------------------------------------------------
Confidence            999999999999999999854422100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ......++++|+|||.+.+ ..++.++|||||||++|||++  
T Consensus       158 -------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~  200 (298)
T cd07841         158 -------------------------------------KMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRV  200 (298)
T ss_pred             -------------------------------------cccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence                                                 0001145788999999865 457999999999999999999  


Q ss_pred             CCCCCchhhHHhHhhccCC----------------------CC-----hhhhccChhhHHHHHHccCCCCCCCCCHHHHh
Q 002736          268 PFSTGEEKTRTMSSLRHRV----------------------LP-----PQLLLKFPKEASFCLWLLHPEPSGRPKMGELL  320 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~----------------------~~-----~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil  320 (886)
                      |++...........+....                      .+     ..+......+.+|+.+||.++|.+|||+.|++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l  280 (298)
T cd07841         201 PFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQAL  280 (298)
T ss_pred             ccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHh
Confidence            5444333322221111100                      00     01122345677999999999999999999999


Q ss_pred             cCCCCCCCcCc
Q 002736          321 QSEFLNEPRDS  331 (886)
Q Consensus       321 ~h~~~~~~~~~  331 (886)
                      +|+||.....+
T Consensus       281 ~~~~~~~~~~~  291 (298)
T cd07841         281 EHPYFSNDPAP  291 (298)
T ss_pred             hCccccCCCCC
Confidence            99999986543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.3e-25  Score=219.22  Aligned_cols=291  Identities=15%  Similarity=0.257  Sum_probs=244.3

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcE
Q 002736          563 DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVV  642 (886)
Q Consensus       563 ~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V  642 (886)
                      .+.+|+..|..++.......+.|++.|.+.+||.+++.       .+.....+|.+.|++|.|++ .+.++++++.|++.
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-------~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-------ACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETA  214 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccc-------cceeeecccccceeeEEecc-ccceEEEccCCcch
Confidence            45789999999999988889999999999999999874       34455668999999999998 79999999999999


Q ss_pred             EEEEC------CC----------------------------------ceEEEEecccCCcEEEEEEccCCCCEEEEEeCC
Q 002736          643 QVWDV------SR----------------------------------SQVLTEMREHERRVWSIDFSSADPTLLASGSDD  682 (886)
Q Consensus       643 ~iWd~------~t----------------------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  682 (886)
                      .||..      ..                                  ..++..+.+|.+.|.+.+|.. .+..+++++-|
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWD  293 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWD  293 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeecc
Confidence            99961      11                                  013566789999999999995 89999999999


Q ss_pred             CcEEEEeCchhhhhhccCceeeeeec-CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEe
Q 002736          683 GSVKLWSINQAILLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF  761 (886)
Q Consensus       683 g~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f  761 (886)
                      .+..|||+++       +..+..+.+ ...++-++-+|. .+++++.|.|.+.++||+|..-..+..|+||...|+++.|
T Consensus       294 RTAnlwDVEt-------ge~v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  294 RTANLWDVET-------GEVVNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF  365 (481)
T ss_pred             ccceeeeecc-------CceeccccCcchhccccccCCc-ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence            9999999999       777776664 455888888998 8999999999999999999766668899999999999999


Q ss_pred             cCCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccC
Q 002736          762 VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFN  841 (886)
Q Consensus       762 ~~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~  841 (886)
                      ..+..+++||.|.+|++||+++..     .|+.++. ..++++-++.+..+..||.--.+..|++||++.. .+..+   
T Consensus       366 ~~dd~vVSgSDDrTvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRl---  435 (481)
T KOG0300|consen  366 NTDDRVVSGSDDRTVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARL---  435 (481)
T ss_pred             ecCCceeecCCCceEEEeeecccc-----Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccC---
Confidence            988899999999999999999885     5788877 4567999999999999999999999999998753 33222   


Q ss_pred             CCCCCCCCccccCCCcEEEEEEccCCCc-EEEEEeCCCCEEEEEe
Q 002736          842 HADPLSGPETDDAAQFISSVCWRGQSSN-TLVAANSSGNIKILEM  885 (886)
Q Consensus       842 ~~~~~~~~~~~~~~~~V~~v~~s~~~~~-~l~s~~~dg~I~iw~l  885 (886)
                           +...-.+|..-|.|++|..+-+. -|++++.|..+.=|++
T Consensus       436 -----PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  436 -----PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             -----CcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence                 11122567788999999765430 3899999999999986

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.94  E-value=5.5e-27  Score=262.83  Aligned_cols=194  Identities=17%  Similarity=0.205  Sum_probs=147.8

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------------------------------
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------------------------------   75 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------------------------------   75 (886)
                      +|++++.+++ .|.   ..+.++++||| .+++|.++|.+.                                       
T Consensus       100 ~h~nIv~~~~-~~~---~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (374)
T cd05106         100 QHKNIVNLLG-ACT---HGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSS  175 (374)
T ss_pred             cCCceeeEee-Eec---CCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccc
Confidence            7888888776 444   34678999999 889999988432                                       


Q ss_pred             ------------------------------CCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeee
Q 002736           76 ------------------------------KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIE  125 (886)
Q Consensus        76 ------------------------------~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~d  125 (886)
                                                    ...+++.+++.|+.||+.||.|||++||+||||||+|||++.++.+||+|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~D  255 (374)
T cd05106         176 QGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICD  255 (374)
T ss_pred             cccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEee
Confidence                                          12478889999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCccc
Q 002736          126 SASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQE  205 (886)
Q Consensus       126 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (886)
                      ||+++........                                                                   
T Consensus       256 fGla~~~~~~~~~-------------------------------------------------------------------  268 (374)
T cd05106         256 FGLARDIMNDSNY-------------------------------------------------------------------  268 (374)
T ss_pred             ceeeeeccCCcce-------------------------------------------------------------------
Confidence            9998543211000                                                                   


Q ss_pred             ccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc----CCCCCchhhHHhHh
Q 002736          206 HKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSS  281 (886)
Q Consensus       206 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~  281 (886)
                                           .......++..|+|||++.+..++.++|||||||++|||++    ||............
T Consensus       269 ---------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~  327 (374)
T cd05106         269 ---------------------VVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKM  327 (374)
T ss_pred             ---------------------eeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHH
Confidence                                 00000134567999999988889999999999999999985    77554443333333


Q ss_pred             hccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          282 LRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +.....+......++++.+++.+||+.||.+||++.++++
T Consensus       328 ~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         328 VKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             HHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            3333333333334678899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.94  E-value=6.2e-27  Score=250.09  Aligned_cols=206  Identities=18%  Similarity=0.158  Sum_probs=154.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+....|++++..++ ++.+ .....++++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++||+|+||
T Consensus        56 ~~l~~l~h~~i~~~~~-~~~~-~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl  132 (265)
T cd06652          56 QLLKNLLHERIVQYYG-CLRD-PMERTLSIFMEHMPGGSIKDQLKSY-GALTENVTRKYTRQILEGVSYLHSNMIVHRDI  132 (265)
T ss_pred             HHHHhcCCCCeeeEEe-Eecc-CCCceEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCC
Confidence            3455567888887666 3322 223567889999 788999999654 45799999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++..........                                                 
T Consensus       133 ~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~-------------------------------------------------  163 (265)
T cd06652         133 KGANILRDSVGNVKLGDFGASKRLQTICLSG-------------------------------------------------  163 (265)
T ss_pred             CHHHEEecCCCCEEECcCccccccccccccc-------------------------------------------------
Confidence            9999999999999999999885432110000                                                 


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            .......|+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       164 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g  205 (265)
T cd06652         164 --------------------------------------TGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTE  205 (265)
T ss_pred             --------------------------------------cccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhC
Confidence                                                  00011257888999999988889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                        ||..................+..+......+.+++.+|+. +|.+||+++++++|||+.
T Consensus       206 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         206 KPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRHTFVH  265 (265)
T ss_pred             CCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcCcccC
Confidence              7654433333333222222232333345667799999995 999999999999999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.94  E-value=2.2e-26  Score=251.58  Aligned_cols=205  Identities=16%  Similarity=0.112  Sum_probs=156.8

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+...+|++++...+ ++.+   .+.++++|||..++|.+++......+++.++..++.||+.||.|||++||+||||||
T Consensus        68 ~l~~l~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p  143 (308)
T cd06634          68 FLQKLRHPNTIQYRG-CYLR---EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKA  143 (308)
T ss_pred             HHHhCCCCCcccEEE-EEEc---CCeeEEEEEccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCH
Confidence            445567888887666 4443   467889999977899888855556789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++......                                                       
T Consensus       144 ~nil~~~~~~~kl~dfg~~~~~~~~-------------------------------------------------------  168 (308)
T cd06634         144 GNILLSEPGLVKLGDFGSASIMAPA-------------------------------------------------------  168 (308)
T ss_pred             HhEEECCCCcEEECCcccceeecCc-------------------------------------------------------
Confidence            9999999999999999987432110                                                       


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---CCCCCcccccchHHHHHHHHhc
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---GAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ....|++.|+|||.+.   ...++.++|||||||++|||++
T Consensus       169 ---------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~  209 (308)
T cd06634         169 ---------------------------------------NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE  209 (308)
T ss_pred             ---------------------------------------ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHc
Confidence                                                   0125678899999975   3458899999999999999998


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCchH
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSME  333 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~~~  333 (886)
                         ||............................+.+||.+||..+|.+||++.++++|||+.....+..
T Consensus       210 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~~~~~~  278 (308)
T cd06634         210 RKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERPPTV  278 (308)
T ss_pred             CCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCccccccCChhH
Confidence               665544333332222222221122234566789999999999999999999999999988655443

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.94  E-value=9.4e-27  Score=254.63  Aligned_cols=209  Identities=17%  Similarity=0.267  Sum_probs=151.9

Q ss_pred             eeecccccccCCCCCCcccccccc-----CCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAA-----IDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      ..+....|++++..++ +|.....     ...++++|||.+++|.+++.+....+++.+++.++.||+.||.|||++||+
T Consensus        63 ~~l~~l~h~~iv~~~~-~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~  141 (310)
T cd07865          63 KILQLLKHENVVNLIE-ICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKIL  141 (310)
T ss_pred             HHHHhCCCCCccceEE-EEecccccccCCCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            3445567888877666 5554332     356799999988899999866555789999999999999999999999999


Q ss_pred             ecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      |+||||+||+++.++.+|++|||++..........                                             
T Consensus       142 H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~---------------------------------------------  176 (310)
T cd07865         142 HRDMKAANILITKDGILKLADFGLARAFSLSKNSK---------------------------------------------  176 (310)
T ss_pred             ccCCCHHHEEECCCCcEEECcCCCcccccCCcccC---------------------------------------------
Confidence            99999999999999999999999985432110000                                             


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHH
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLF  263 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~  263 (886)
                                                               +......+++..|+|||.+.+.. ++.++|||||||++|
T Consensus       177 -----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~  215 (310)
T cd07865         177 -----------------------------------------PNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMA  215 (310)
T ss_pred             -----------------------------------------CCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHH
Confidence                                                     00001125788899999987654 789999999999999


Q ss_pred             HHhc---CCCCCchhhHH--hHhhccCCCChh----------------------------hhccChhhHHHHHHccCCCC
Q 002736          264 ELFC---PFSTGEEKTRT--MSSLRHRVLPPQ----------------------------LLLKFPKEASFCLWLLHPEP  310 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~--~~~~~~~~~~~~----------------------------~~~~~~~~~~li~~~L~~dP  310 (886)
                      ||++   ||.........  ...+.....+..                            .....+.+.+||.+||..||
T Consensus       216 el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P  295 (310)
T cd07865         216 EMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDP  295 (310)
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCCh
Confidence            9998   55433322111  111111100000                            00123456799999999999


Q ss_pred             CCCCCHHHHhcCCCC
Q 002736          311 SGRPKMGELLQSEFL  325 (886)
Q Consensus       311 ~~Rps~~eil~h~~~  325 (886)
                      .+|||++|+++||||
T Consensus       296 ~~R~t~~e~l~h~~f  310 (310)
T cd07865         296 AKRIDADTALNHDFF  310 (310)
T ss_pred             hhccCHHHHhcCCCC
Confidence            999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.94  E-value=6.2e-27  Score=261.05  Aligned_cols=204  Identities=20%  Similarity=0.264  Sum_probs=151.0

Q ss_pred             ceeecccccccCCCCCCccccccc---cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ...+...+|++++..++ ++....   +...+|++|||.+++|.+++...   +++..+..++.||+.||.|||++||+|
T Consensus        66 ~~~l~~l~h~~iv~~~~-~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~---l~~~~~~~~~~ql~~aL~~LH~~gi~H  141 (353)
T cd07850          66 LVLMKLVNHKNIIGLLN-VFTPQKSLEEFQDVYLVMELMDANLCQVIQMD---LDHERMSYLLYQMLCGIKHLHSAGIIH  141 (353)
T ss_pred             HHHHHhcCCCCCcceee-eeccCCCccccCcEEEEEeccCCCHHHHHhhc---CCHHHHHHHHHHHHHHHHHHHhCCeee
Confidence            34455568888887766 433222   23457999999888999988543   899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+||+++.++.+|++|||++.......                                                 
T Consensus       142 ~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-------------------------------------------------  172 (353)
T cd07850         142 RDLKPSNIVVKSDCTLKILDFGLARTAGTSF-------------------------------------------------  172 (353)
T ss_pred             CCCCHHHEEECCCCCEEEccCccceeCCCCC-------------------------------------------------
Confidence            9999999999999999999999985432110                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                ......+++.|+|||.+.+..++.++|||||||++|+|
T Consensus       173 ------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l  210 (353)
T cd07850         173 ------------------------------------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM  210 (353)
T ss_pred             ------------------------------------------CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHH
Confidence                                                      00112568889999999998899999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhcc----------------------CC---------------CChh----hhccChhhHHH
Q 002736          266 FC---PFSTGEEKTRTMSSLRH----------------------RV---------------LPPQ----LLLKFPKEASF  301 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~----------------------~~---------------~~~~----~~~~~~~~~~l  301 (886)
                      ++   ||............+..                      ..               .+..    .....+.+.+|
T Consensus       211 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  290 (353)
T cd07850         211 IRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDL  290 (353)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHH
Confidence            98   66443321111111000                      00               0000    00123346799


Q ss_pred             HHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          302 CLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       302 i~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      |.+||..||.+|||+.|+|+||||+.
T Consensus       291 i~~~L~~dP~~R~t~~eiL~~~~~~~  316 (353)
T cd07850         291 LSKMLVIDPEKRISVDDALQHPYINV  316 (353)
T ss_pred             HHHHcCCChhhCcCHHHHhcChhHhh
Confidence            99999999999999999999998864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.94  E-value=8.4e-27  Score=261.61  Aligned_cols=194  Identities=14%  Similarity=0.178  Sum_probs=148.3

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC--------------------------------------
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK--------------------------------------   76 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~--------------------------------------   76 (886)
                      +|+|++..++ +|.+   .+..+++||| .|++|.++|.+..                                      
T Consensus        97 ~HpnIv~l~~-~~~~---~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  172 (375)
T cd05104          97 NHINIVNLLG-ACTV---GGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMK  172 (375)
T ss_pred             CCcceeeeee-eecc---CCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcC
Confidence            7889888777 5543   4567888999 8999999985321                                      


Q ss_pred             ------------------------------------CCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCc
Q 002736           77 ------------------------------------RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNH  120 (886)
Q Consensus        77 ------------------------------------~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~  120 (886)
                                                          ..+++..++.++.||+.||.|||++||+||||||+|||++..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~  252 (375)
T cd05104         173 PGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRI  252 (375)
T ss_pred             CCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCc
Confidence                                                24678899999999999999999999999999999999999999


Q ss_pred             eeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccc
Q 002736          121 VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLV  200 (886)
Q Consensus       121 vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (886)
                      +|++|||+++.........                                                             
T Consensus       253 ~kl~DfG~a~~~~~~~~~~-------------------------------------------------------------  271 (375)
T cd05104         253 TKICDFGLARDIRNDSNYV-------------------------------------------------------------  271 (375)
T ss_pred             EEEecCccceeccCccccc-------------------------------------------------------------
Confidence            9999999986432110000                                                             


Q ss_pred             cCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc----CCCCCchhh
Q 002736          201 EGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKT  276 (886)
Q Consensus       201 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~  276 (886)
                                                 ......++..|+|||.+.+..++.++|||||||++|||++    ||.......
T Consensus       272 ---------------------------~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~  324 (375)
T cd05104         272 ---------------------------VKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDS  324 (375)
T ss_pred             ---------------------------ccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchH
Confidence                                       0000134567999999999889999999999999999996    665444333


Q ss_pred             HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          277 RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      .....+.....+..+...++++.+|+.+||+.||++||++.|+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~  369 (375)
T cd05104         325 KFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQ  369 (375)
T ss_pred             HHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHH
Confidence            344444443333333334567889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.94  E-value=3.7e-27  Score=256.25  Aligned_cols=205  Identities=15%  Similarity=0.182  Sum_probs=157.5

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .|++|.+++.+  ..+++.++..++.||+.||.|||+.||+||||
T Consensus        68 ~~l~~~~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL  141 (297)
T cd06656          68 LVMRENKNPNIVNYLD-SYL---VGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALDFLHSNQVIHRDI  141 (297)
T ss_pred             HHHHhCCCCCEeeEEE-EEe---cCCEEEEeecccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            3455578888888776 333   34578899999 89999999954  35789999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.++++|||++........                                                   
T Consensus       142 ~p~Nili~~~~~~~l~Dfg~~~~~~~~~~---------------------------------------------------  170 (297)
T cd06656         142 KSDNILLGMDGSVKLTDFGFCAQITPEQS---------------------------------------------------  170 (297)
T ss_pred             CHHHEEECCCCCEEECcCccceEccCCcc---------------------------------------------------
Confidence            99999999999999999998843211100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......+++.|+|||.+.+..++.++|||||||++|+|++ 
T Consensus       171 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg  211 (297)
T cd06656         171 ---------------------------------------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEG  211 (297)
T ss_pred             ---------------------------------------CcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                   0011267889999999998889999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccCCCC-hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLP-PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                        ||..................+ .......+.+.+|+.+||..+|.+||++.++++||||.....
T Consensus       212 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~~  277 (297)
T cd06656         212 EPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKP  277 (297)
T ss_pred             CCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhccccc
Confidence              775544333222222211111 122334566789999999999999999999999999986543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.94  E-value=1.8e-27  Score=253.16  Aligned_cols=201  Identities=25%  Similarity=0.372  Sum_probs=151.4

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+.+..|++++..+. +..+   ...++++||+ .+++|.++|. ....+++.++..++.||++||.+||++||+|+||
T Consensus        50 ~~~~~l~~~~i~~~~~-~~~~---~~~~~~v~~~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~di  124 (260)
T PF00069_consen   50 KILRRLRHPNIVQILD-VFQD---DNYLYIVMEYCPGGSLQDYLQ-KNKPLSEEEILKIAYQILEALAYLHSKGIVHRDI  124 (260)
T ss_dssp             HHHHHHTBTTBCHEEE-EEEE---SSEEEEEEEEETTEBHHHHHH-HHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSB
T ss_pred             hccccccccccccccc-cccc---ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            3444457888877655 4433   5677899999 5569999997 3367899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||.+........                                                   
T Consensus       125 kp~NIl~~~~~~~~l~Dfg~~~~~~~~~~---------------------------------------------------  153 (260)
T PF00069_consen  125 KPENILLDENGEVKLIDFGSSVKLSENNE---------------------------------------------------  153 (260)
T ss_dssp             SGGGEEESTTSEEEESSGTTTEESTSTTS---------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccc---------------------------------------------------
Confidence            99999999999999999999843200000                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-CCCCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-GAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......+++.|+|||++. +..++.++||||||+++|+|++
T Consensus       154 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  194 (260)
T PF00069_consen  154 ---------------------------------------NFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLT  194 (260)
T ss_dssp             ---------------------------------------EBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence                                                   011126789999999998 7779999999999999999999


Q ss_pred             ---CCCCCc--hhhHHhHhhccCCCChhhh---ccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGE--EKTRTMSSLRHRVLPPQLL---LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||....  ..............+....   ...+.+.+++.+||+.||++||++.++++||||
T Consensus       195 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  195 GKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             SSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             cccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHhcCCCC
Confidence               675541  1222222222111111111   112678899999999999999999999999997

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=233.33  Aligned_cols=254  Identities=24%  Similarity=0.396  Sum_probs=207.0

Q ss_pred             CCCEEEEEEcC-------CCCEEEEEeCCCcEEEEEcCcccCcccccccceEE-------------------ecCCCCee
Q 002736          568 SNLVCSLSFDR-------DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE-------------------MASRSKLS  621 (886)
Q Consensus       568 ~~~V~sl~f~~-------d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~-------------------~~~~~~I~  621 (886)
                      .....|++|..       -|+++|.|+.+..|-|||+.-.     +...|...                   .+|...|.
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~-----d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl  247 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV-----DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL  247 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccc-----cccccceeechhhhhhhhhhcccccccccchHHHH
Confidence            34446777753       3679999999999999998642     11222222                   24788899


Q ss_pred             eEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCc
Q 002736          622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGV  701 (886)
Q Consensus       622 ~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~  701 (886)
                      .++||....+.|||||.|.+|++||+.++++...+..|.+.|.++.|+|..+..|++|+.|++|.|.|.|..      ..
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~------~~  321 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP------SN  321 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc------cc
Confidence            999999889999999999999999999999999999999999999999999999999999999999999963      33


Q ss_pred             eeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec--CCCEEEEEECCCcEEEE
Q 002736          702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLW  779 (886)
Q Consensus       702 ~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~--~~~~l~sgs~Dg~i~lw  779 (886)
                      .-...+..+.|-.|+|+|.+.+.+++++.||+|+.+|+|+...|+.+++.|...|++++++  ...+|+|+|.|+++++|
T Consensus       322 s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  322 SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence            3345566788999999999889999999999999999999988999999999999999996  67799999999999999


Q ss_pred             eCCCCCccccCCCceEeecCCCceeEEEEecCCC-EEEEEcCCCcEEEEecCCCCcce
Q 002736          780 DLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG-YVATGSETNEVFVYHKAFPMPAL  836 (886)
Q Consensus       780 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~-~lasgs~Dg~v~iwd~~~~~~~~  836 (886)
                      ++.....+....  +.+.  -+...|.++.|+-. ++|.|+..+.++|||+.+..++.
T Consensus       402 ~~~~~~~~~v~~--~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  402 KFDVDSPKSVKE--HSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             eecCCCCccccc--cccc--ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            998764421111  1111  12245666777654 78888888999999998876553

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=1.6e-26  Score=249.89  Aligned_cols=205  Identities=14%  Similarity=0.165  Sum_probs=156.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC--CCCcChHHHHHHHHHHHHHHHhhcc-cCeeec
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP--KRSVDVYECLHIFRQIVEIVYAAHS-QGIVVH  106 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~--~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHr  106 (886)
                      .+...+|++++.+++ .+.   ..+.++++||| .|++|.+++...  ...+++..++.++.||+.||.|||+ .||+||
T Consensus        52 ~l~~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~  127 (286)
T cd06622          52 ILHKAVSPYIVDFYG-AFF---IEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHR  127 (286)
T ss_pred             HHHhcCCCcHHhhhh-hee---cCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeC
Confidence            345567888888777 333   35678899999 788999988653  2478999999999999999999997 599999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++.++.+|++|||++.......                                                  
T Consensus       128 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--------------------------------------------------  157 (286)
T cd06622         128 DVKPTNVLVNGNGQVKLCDFGVSGNLVASL--------------------------------------------------  157 (286)
T ss_pred             CCCHHHEEECCCCCEEEeecCCcccccCCc--------------------------------------------------
Confidence            999999999999999999999885331110                                                  


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC------CCCcccccchHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA------PVSCASDIYRLGV  260 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~------~~s~~sDIwSlGv  260 (886)
                                                                .....|++.|+|||.+.+.      .++.++|||||||
T Consensus       158 ------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~  195 (286)
T cd06622         158 ------------------------------------------AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGL  195 (286)
T ss_pred             ------------------------------------------cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHH
Confidence                                                      0011567789999998553      3588999999999


Q ss_pred             HHHHHhc---CCCCCchhh--HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          261 LLFELFC---PFSTGEEKT--RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       261 il~eLl~---pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                      ++|||++   ||.......  ..+..+.....+..+....+.+.+|+.+||..+|.+||++.++++||||......
T Consensus       196 il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~~~  271 (286)
T cd06622         196 SILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKNA  271 (286)
T ss_pred             HHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhccCC
Confidence            9999999   774433222  1222233333344444566788899999999999999999999999999876543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=6.9e-27  Score=248.24  Aligned_cols=201  Identities=20%  Similarity=0.254  Sum_probs=158.3

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+.+.+|++++..++ ++.   ..+.++++||| .|++|.+++.+. ...+++.++..++.|++.||.|||++||+|+|
T Consensus        51 ~~l~~~~h~~i~~~~~-~~~---~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~d  126 (256)
T cd08221          51 VILSLLQHPNIIAYYN-HFM---DDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRD  126 (256)
T ss_pred             HHHHhCCCCCeeEEEe-EEe---cCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence            3455667888888776 333   34678889999 789999999654 45689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.+|++|||++........                                                  
T Consensus       127 l~p~ni~~~~~~~~kl~d~~~~~~~~~~~~--------------------------------------------------  156 (256)
T cd08221         127 IKTLNIFLTKAGLIKLGDFGISKILGSEYS--------------------------------------------------  156 (256)
T ss_pred             CChHhEEEeCCCCEEECcCcceEEcccccc--------------------------------------------------
Confidence            999999999999999999998854321100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......|++.|+|||.+.+..++.++|||||||++|||++
T Consensus       157 ----------------------------------------~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~  196 (256)
T cd08221         157 ----------------------------------------MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLT  196 (256)
T ss_pred             ----------------------------------------cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHH
Confidence                                                    0011267889999999988889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||..... ......+....+++.....+.++.+++.+||.++|.+||++.++++|+|+
T Consensus       197 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         197 LKRTFDATNP-LNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             CCCCCCCCCH-HHHHHHHHcCCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHhhCcCC
Confidence               6644333 33333333443444444556788899999999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.94  E-value=8.2e-27  Score=247.76  Aligned_cols=200  Identities=22%  Similarity=0.201  Sum_probs=156.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .|++|.+++.+. ..+++..+..++.||+.||.|||++||+|+||
T Consensus        54 ~~l~~~~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  128 (258)
T cd06632          54 ALLSKLQHPNIVQYLG-TER---EEDNLYIFLELVPGGSLAKLLKKY-GSFPEPVIRLYTRQILLGLEYLHDRNTVHRDI  128 (258)
T ss_pred             HHHHhcCCCCchheee-eEe---cCCeEEEEEEecCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            3455668888888776 443   34678899999 788999999654 46899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      +|+||+++.++.+|++|||++.......                                                    
T Consensus       129 ~~~ni~~~~~~~~kl~d~~~~~~~~~~~----------------------------------------------------  156 (258)
T cd06632         129 KGANILVDTNGVVKLADFGMAKQVVEFS----------------------------------------------------  156 (258)
T ss_pred             CHHHEEECCCCCEEEccCccceeccccc----------------------------------------------------
Confidence            9999999999999999999885432110                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......|+..|+|||.+.... ++.++|+|||||++|+|++
T Consensus       157 ---------------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~  197 (258)
T cd06632         157 ---------------------------------------FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMAT  197 (258)
T ss_pred             ---------------------------------------cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHh
Confidence                                                   000125788899999997766 8999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||..................+.......+.+.+++.+||..+|.+||++.+++.|||+
T Consensus       198 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         198 GKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             CCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence               7755543333333222233333334456788899999999999999999999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.94  E-value=1.5e-26  Score=245.51  Aligned_cols=199  Identities=21%  Similarity=0.283  Sum_probs=155.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++.++    ..+.++++||| .|++|.+++.+. ...+++..++.++.||+.+|.|||++||+|+||
T Consensus        52 ~l~~~~~~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl  127 (256)
T cd08220          52 VLKLLSHPNIIEYYENFL----EDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDL  127 (256)
T ss_pred             HHhhCCCCchhheeeeEe----cCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            444567888888776222    34678899999 788999999653 345899999999999999999999999999999


Q ss_pred             CCcceeeccCC-ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          109 RPSCFVMSSFN-HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       109 kP~NIll~~~~-~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      ||+||+++.++ .+|++|||.+.......                                                   
T Consensus       128 ~~~nil~~~~~~~~~l~d~~~~~~~~~~~---------------------------------------------------  156 (256)
T cd08220         128 KTQNILLDKHKMVVKIGDFGISKILSSKS---------------------------------------------------  156 (256)
T ss_pred             CHHHEEEcCCCCEEEEccCCCceecCCCc---------------------------------------------------
Confidence            99999998554 57999999985432110                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......|+..|+|||.+.+..++.++|||||||++|+|++
T Consensus       157 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~  196 (256)
T cd08220         157 ----------------------------------------KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELAS  196 (256)
T ss_pred             ----------------------------------------cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHh
Confidence                                                    0001257888999999998889999999999999999998


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||.............. ....+.....++.+.+++.+||..+|.+|||+.|+++||||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         197 LKRAFEAANLPALVLKIMS-GTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             CCCCcccCchHHHHHHHHh-cCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence               7755554444433333 22333334466788999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.94  E-value=1.2e-26  Score=247.37  Aligned_cols=203  Identities=20%  Similarity=0.277  Sum_probs=159.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---CCCcChHHHHHHHHHHHHHHHhhc-----c
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---KRSVDVYECLHIFRQIVEIVYAAH-----S  100 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---~~~l~~~~~~~i~~qi~~~l~~lH-----s  100 (886)
                      ..+...+|++++..++ .+.. .....++++||| .+++|.+++...   ...+++.+++.++.||+.||.|||     +
T Consensus        51 ~~l~~l~~~~i~~~~~-~~~~-~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~  128 (265)
T cd08217          51 NILRELKHPNIVRYYD-RIID-RSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPG  128 (265)
T ss_pred             HHHHhcCCCccceeee-eeec-CCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            3455567888888766 3322 234557889998 788999998542   467899999999999999999999     9


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      .+|+|+||||+||+++.++.+|++|||++........                                           
T Consensus       129 ~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~-------------------------------------------  165 (265)
T cd08217         129 NTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSS-------------------------------------------  165 (265)
T ss_pred             CcceecCCCHHHEEEecCCCEEEecccccccccCCcc-------------------------------------------
Confidence            9999999999999999999999999999865422110                                           


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     ......|++.|+|||.+.+..++.++|||||||
T Consensus       166 -----------------------------------------------~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~  198 (265)
T cd08217         166 -----------------------------------------------FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGC  198 (265)
T ss_pred             -----------------------------------------------cccccccCCCccChhhhcCCCCCchhHHHHHHH
Confidence                                                           001126788999999999888999999999999


Q ss_pred             HHHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          261 LLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       261 il~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ++|+|++   ||.... .......+.....+.......+.+.+++.+||..+|.+||++.++++|||+
T Consensus       199 il~~l~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         199 LIYELCALSPPFTARN-QLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             HHHHHHHCCCcccCcC-HHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence            9999998   665443 333334444444444444566788899999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.94  E-value=1e-26  Score=254.13  Aligned_cols=201  Identities=20%  Similarity=0.205  Sum_probs=153.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrD  107 (886)
                      ..+.+.+|++++..++ ++.   ..+.++++||| .|++|.+++.+. ..+++..++.++.||+.||.|||+ +||+|||
T Consensus        51 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~ey~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~d  125 (308)
T cd06615          51 KVLHECNSPYIVGFYG-AFY---SDGEISICMEHMDGGSLDQVLKKA-GRIPENILGKISIAVLRGLTYLREKHKIMHRD  125 (308)
T ss_pred             HHHHhCCCCCCCeEEE-EEe---eCCEEEEEeeccCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECC
Confidence            3455568888888776 443   34678999999 788999999654 578999999999999999999998 5999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++.+|++|||++......                                                    
T Consensus       126 l~p~nil~~~~~~~~l~dfg~~~~~~~~----------------------------------------------------  153 (308)
T cd06615         126 VKPSNILVNSRGEIKLCDFGVSGQLIDS----------------------------------------------------  153 (308)
T ss_pred             CChHHEEEecCCcEEEccCCCccccccc----------------------------------------------------
Confidence            9999999999999999999987432100                                                    


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              .....+|+..|+|||.+.+..++.++|||||||++|||++
T Consensus       154 ----------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~  193 (308)
T cd06615         154 ----------------------------------------MANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAI  193 (308)
T ss_pred             ----------------------------------------ccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHh
Confidence                                                    0001267889999999988889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCC-----------------------------------CChhh--hccChhhHHHHHHccC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRV-----------------------------------LPPQL--LLKFPKEASFCLWLLH  307 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~-----------------------------------~~~~~--~~~~~~~~~li~~~L~  307 (886)
                         ||..... ......+....                                   .++..  ....+.+.+|+.+||.
T Consensus       194 g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  272 (308)
T cd06615         194 GRYPIPPPDA-KELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLK  272 (308)
T ss_pred             CCCCCCCcch-hhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHcc
Confidence               6643321 11111111000                                   00000  1134568899999999


Q ss_pred             CCCCCCCCHHHHhcCCCCCCC
Q 002736          308 PEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       308 ~dP~~Rps~~eil~h~~~~~~  328 (886)
                      .+|++||++.++++||||...
T Consensus       273 ~~P~~Rpt~~~ll~~~~~~~~  293 (308)
T cd06615         273 KNPKERADLKELTKHPFIKRA  293 (308)
T ss_pred             CChhhCcCHHHHhcChhhhhc
Confidence            999999999999999999764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.94  E-value=1.1e-26  Score=256.72  Aligned_cols=196  Identities=18%  Similarity=0.240  Sum_probs=149.0

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC--------------------------------------
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK--------------------------------------   76 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~--------------------------------------   76 (886)
                      +|++++..++ .|..  ....++++||| .+++|.++|....                                      
T Consensus        69 ~h~niv~~~~-~~~~--~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (337)
T cd05054          69 HHLNVVNLLG-ACTK--PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASS  145 (337)
T ss_pred             cCcchhheee-eEec--CCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCcccccccc
Confidence            6888887766 5543  34578888999 8899999984321                                      


Q ss_pred             ----------------------CCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCC
Q 002736           77 ----------------------RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGS  134 (886)
Q Consensus        77 ----------------------~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~  134 (886)
                                            ..+++..+..++.||+.||.|||++||+||||||+|||++.++.++++|||++.....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~  225 (337)
T cd05054         146 GFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYK  225 (337)
T ss_pred             ccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhccc
Confidence                                  2578899999999999999999999999999999999999999999999999864421


Q ss_pred             CccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccccccc
Q 002736          135 DSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVN  214 (886)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  214 (886)
                      ....                                                                            
T Consensus       226 ~~~~----------------------------------------------------------------------------  229 (337)
T cd05054         226 DPDY----------------------------------------------------------------------------  229 (337)
T ss_pred             Ccch----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             cccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChh
Q 002736          215 VEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQ  290 (886)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~  290 (886)
                                  .......++..|+|||.+.+..++.++|||||||+||||++    ||............+.....+..
T Consensus       230 ------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~  297 (337)
T cd05054         230 ------------VRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRA  297 (337)
T ss_pred             ------------hhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCC
Confidence                        00001244667999999999999999999999999999986    66443333333333433333333


Q ss_pred             hhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       291 ~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      .....+++.+++.+||+.+|++||++.|++++
T Consensus       298 ~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         298 PEYATPEIYSIMLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             CccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            34456788999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=7.8e-27  Score=240.77  Aligned_cols=186  Identities=19%  Similarity=0.310  Sum_probs=154.0

Q ss_pred             ccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccC
Q 002736           52 AAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCS  130 (886)
Q Consensus        52 ~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~  130 (886)
                      ...|.+|.+||| .||+|.-.|.+- +++-+..+..|+..|+-||=|||++|||.||||.+||||+..|+|||+|||+|+
T Consensus       420 QTmDRLyFVMEyvnGGDLMyhiQQ~-GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcK  498 (683)
T KOG0696|consen  420 QTMDRLYFVMEYVNGGDLMYHIQQV-GKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  498 (683)
T ss_pred             hhhhheeeEEEEecCchhhhHHHHh-cccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeeccccc
Confidence            467889999999 999999888554 688999999999999999999999999999999999999999999999999995


Q ss_pred             CCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccc
Q 002736          131 DSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILD  210 (886)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  210 (886)
                      .-..+.                                                                          
T Consensus       499 Eni~~~--------------------------------------------------------------------------  504 (683)
T KOG0696|consen  499 ENIFDG--------------------------------------------------------------------------  504 (683)
T ss_pred             ccccCC--------------------------------------------------------------------------
Confidence            421110                                                                          


Q ss_pred             cccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCC
Q 002736          211 NRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL  287 (886)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~  287 (886)
                                      ..+.+.+|||-|+|||++...+|+.++|+||+||+|||||.   ||.+..+......+..+...
T Consensus       505 ----------------~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvs  568 (683)
T KOG0696|consen  505 ----------------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVS  568 (683)
T ss_pred             ----------------cceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCc
Confidence                            02335699999999999999999999999999999999999   77666555555555555544


Q ss_pred             ChhhhccChhhHHHHHHccCCCCCCCCCH-----HHHhcCCCCCCCcC
Q 002736          288 PPQLLLKFPKEASFCLWLLHPEPSGRPKM-----GELLQSEFLNEPRD  330 (886)
Q Consensus       288 ~~~~~~~~~~~~~li~~~L~~dP~~Rps~-----~eil~h~~~~~~~~  330 (886)
                      .|.  ..+.++.+++..+|.+.|.+|..+     .+|-.||||+....
T Consensus       569 yPK--slSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~iDW  614 (683)
T KOG0696|consen  569 YPK--SLSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRIDW  614 (683)
T ss_pred             Ccc--cccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhccH
Confidence            333  344778899999999999999653     67889999987654

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=6.2e-27  Score=259.02  Aligned_cols=214  Identities=15%  Similarity=0.194  Sum_probs=156.4

Q ss_pred             eeecccccccCCCCCCcccccc-ccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENE-AAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ ++..+ .....++++|||.+++|.+++... ..+++.+++.++.||+.||.|||++||+||||
T Consensus        56 ~~l~~l~h~~iv~~~~-~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dl  133 (334)
T cd07855          56 KILRHFKHDNIIAIRD-ILRPPGADFKDVYVVMDLMESDLHHIIHSD-QPLTEEHIRYFLYQLLRGLKYIHSANVIHRDL  133 (334)
T ss_pred             HHHHhcCCCCccCHHH-hccccCCCCceEEEEEehhhhhHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            3445556888877665 44322 234568999999888999999654 56899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++.........                                                  
T Consensus       134 kp~Nil~~~~~~~kl~dfg~~~~~~~~~~~--------------------------------------------------  163 (334)
T cd07855         134 KPSNLLVNEDCELRIGDFGMARGLSSSPTE--------------------------------------------------  163 (334)
T ss_pred             CHHHEEEcCCCcEEecccccceeecccCcC--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                          ........+|+.+|+|||.+.+ ..++.++|||||||++|||++
T Consensus       164 ------------------------------------~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~  207 (334)
T cd07855         164 ------------------------------------HKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLG  207 (334)
T ss_pred             ------------------------------------CCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHc
Confidence                                                0000112378899999999866 458999999999999999998


Q ss_pred             ---CCCCCchhhHHhHhhcc-------------------------C-CCC----hhhhccChhhHHHHHHccCCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRH-------------------------R-VLP----PQLLLKFPKEASFCLWLLHPEPSGRP  314 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~-------------------------~-~~~----~~~~~~~~~~~~li~~~L~~dP~~Rp  314 (886)
                         ||...... ..+..+..                         . ..+    ......++.+.++|.+||+.+|.+||
T Consensus       208 g~~pf~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp  286 (334)
T cd07855         208 RRQLFPGKNYV-HQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERI  286 (334)
T ss_pred             CCCccCCCChH-HHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCc
Confidence               66433221 11111000                         0 000    01123457788999999999999999


Q ss_pred             CHHHHhcCCCCCCCcCch
Q 002736          315 KMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       315 s~~eil~h~~~~~~~~~~  332 (886)
                      ++.++++||||.....+.
T Consensus       287 t~~~~l~~~~~~~~~~~~  304 (334)
T cd07855         287 TVEQALQHPFLAQYHDPD  304 (334)
T ss_pred             CHHHHHhChhhhhccCCc
Confidence            999999999998665443

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=9e-27  Score=249.87  Aligned_cols=198  Identities=17%  Similarity=0.183  Sum_probs=149.6

Q ss_pred             ccccCCCCCCccccccc---cCCceEEEEee-CCcchhhhhcCC---CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           36 DHLRNQGGLSGVCENEA---AIDPFVHAIEW-GDVSLRQWLDKP---KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~---~~~~~~i~~e~-~g~sL~~~l~~~---~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      +|++++..++ .+.+..   ..+.++++||| .+++|.+++...   ...+++..++.++.||+.||.|||++||+|+||
T Consensus        61 ~h~~i~~~~~-~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l  139 (275)
T cd06608          61 NHPNIATFYG-AFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDI  139 (275)
T ss_pred             CCCChheEEE-EEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            6888888776 443332   24568899999 778999988542   357899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      +|+||+++.++.++++|||++........                                                   
T Consensus       140 ~p~ni~~~~~~~~~l~d~~~~~~~~~~~~---------------------------------------------------  168 (275)
T cd06608         140 KGQNILLTKNAEVKLVDFGVSAQLDSTLG---------------------------------------------------  168 (275)
T ss_pred             CHHHEEEccCCeEEECCCccceecccchh---------------------------------------------------
Confidence            99999999999999999998853311100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-----CCCCcccccchHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-----APVSCASDIYRLGVLLF  263 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-----~~~s~~sDIwSlGvil~  263 (886)
                                                             ......|+..|+|||.+..     ..++.++|||||||+||
T Consensus       169 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~  209 (275)
T cd06608         169 ---------------------------------------RRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAI  209 (275)
T ss_pred             ---------------------------------------hhcCccccccccCHhHhcccccccCCccccccHHHhHHHHH
Confidence                                                   0011257888999998754     23788999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhhccCCCChh--hhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRHRVLPPQ--LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ||++   ||.............. ...+..  .......+.+|+.+||..||++|||+.++++|||+
T Consensus       210 ~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         210 ELADGKPPLCDMHPMRALFKIPR-NPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             HHHhCCCCccccchHHHHHHhhc-cCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence            9999   7754433333333222 222111  11234577899999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.94  E-value=1.6e-26  Score=250.46  Aligned_cols=199  Identities=14%  Similarity=0.141  Sum_probs=149.5

Q ss_pred             ccccCCCCCCccccccc--cCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           36 DHLRNQGGLSGVCENEA--AIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~--~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      +|++++..++ ++....  ..+.++++||| .|++|.++++.   ....+++..++.++.||+.||.|||++||+|||||
T Consensus        77 ~h~ni~~~~~-~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlk  155 (291)
T cd06639          77 NHPNVVKFYG-MFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVK  155 (291)
T ss_pred             CCCCeEEEEE-EEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            6788877666 443222  23568899999 78899998852   34568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++........                                                    
T Consensus       156 p~nili~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------------  183 (291)
T cd06639         156 GNNILLTTEGGVKLVDFGVSAQLTSTRL----------------------------------------------------  183 (291)
T ss_pred             HHHEEEcCCCCEEEeecccchhcccccc----------------------------------------------------
Confidence            9999999999999999999854321100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-----CCCcccccchHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-----PVSCASDIYRLGVLLFE  264 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-----~~s~~sDIwSlGvil~e  264 (886)
                                                            ......|+..|+|||.+...     .++.++|||||||++||
T Consensus       184 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~e  225 (291)
T cd06639         184 --------------------------------------RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIE  225 (291)
T ss_pred             --------------------------------------cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHH
Confidence                                                  00012568889999998643     26889999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCCh--hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLPP--QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                      |++   ||........... +.....+.  ........+.+|+.+||..+|.+||++.|+++||||+
T Consensus       226 l~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         226 LGDGDPPLFDMHPVKTLFK-IPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             HhhCCCCCCCCcHHHHHHH-HhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence            998   6655443333332 22222211  1223445678999999999999999999999999984

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.94  E-value=1.6e-26  Score=249.47  Aligned_cols=202  Identities=18%  Similarity=0.166  Sum_probs=153.9

Q ss_pred             cccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhccc-Ceeeccc
Q 002736           33 THGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQ-GIVVHNV  108 (886)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~-giiHrDl  108 (886)
                      ...+|++++.+++ .+.   ..+.++++|||.+++|.+++..   ....+++..++.++.||+.||.|||++ +|+||||
T Consensus        55 ~~~~~~~iv~~~~-~~~---~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dl  130 (283)
T cd06617          55 RSVDCPYTVTFYG-ALF---REGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDV  130 (283)
T ss_pred             HHcCCCCeeeeeE-EEe---cCCcEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCC
Confidence            3467888888777 443   3456899999988888887743   335689999999999999999999998 9999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+||+|||++.......                                                    
T Consensus       131 kp~nil~~~~~~~kl~dfg~~~~~~~~~----------------------------------------------------  158 (283)
T cd06617         131 KPSNVLINRNGQVKLCDFGISGYLVDSV----------------------------------------------------  158 (283)
T ss_pred             CHHHEEECCCCCEEEeeccccccccccc----------------------------------------------------
Confidence            9999999999999999999985331110                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC----CCCCcccccchHHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG----APVSCASDIYRLGVLLFE  264 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~----~~~s~~sDIwSlGvil~e  264 (886)
                                                             ..+...|+..|+|||.+.+    ..++.++|||||||++||
T Consensus       159 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~  199 (283)
T cd06617         159 ---------------------------------------AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIE  199 (283)
T ss_pred             ---------------------------------------ccccccCCccccChhhcCCcccccccCccccchhhHHHHHH
Confidence                                                   0011256888999998865    347899999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCChhhh-ccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLPPQLL-LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      |++   ||..................+..+. ..+..+.+|+.+||..+|.+||++.++++||||....
T Consensus       200 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  268 (283)
T cd06617         200 LATGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHL  268 (283)
T ss_pred             HHhCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhcc
Confidence            999   7754333323333333322222222 2456788999999999999999999999999998754

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=4.9e-27  Score=260.10  Aligned_cols=212  Identities=17%  Similarity=0.224  Sum_probs=155.9

Q ss_pred             CceeecccccccCCCCCCccccccc--cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEA--AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      +...+...+|++++.+++ ++....  .....|++|||.+++|.+++.+. +.+++..++.++.||+.||.|||++||+|
T Consensus        54 E~~~l~~l~h~ni~~~~~-~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~i~H  131 (337)
T cd07858          54 EIKLLRHLDHENVIAIKD-IMPPPHREAFNDVYIVYELMDTDLHQIIRSS-QTLSDDHCQYFLYQLLRGLKYIHSANVLH  131 (337)
T ss_pred             HHHHHHhcCCCCccchHH-heecccccccCcEEEEEeCCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCEec
Confidence            334455668898888766 443321  22457999999889999999654 57899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+||+++.++.+|++|||++........                                                
T Consensus       132 ~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~------------------------------------------------  163 (337)
T cd07858         132 RDLKPSNLLLNANCDLKICDFGLARTTSEKGD------------------------------------------------  163 (337)
T ss_pred             CCCCHHHEEEcCCCCEEECcCccccccCCCcc------------------------------------------------
Confidence            99999999999999999999999854311100                                                


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFE  264 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~e  264 (886)
                                                                ......++.+|+|||.+.+ ..++.++|||||||++|+
T Consensus       164 ------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~  201 (337)
T cd07858         164 ------------------------------------------FMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAE  201 (337)
T ss_pred             ------------------------------------------cccccccccCccChHHHhcCCCCCCcccHHHHHHHHHH
Confidence                                                      0011256889999998865 458999999999999999


Q ss_pred             Hhc---CCCCCchhhHH--hHhh------------------------ccCCC---ChhhhccChhhHHHHHHccCCCCCC
Q 002736          265 LFC---PFSTGEEKTRT--MSSL------------------------RHRVL---PPQLLLKFPKEASFCLWLLHPEPSG  312 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~--~~~~------------------------~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~  312 (886)
                      |++   ||...+.....  ....                        .....   .......++.+.+|+.+||+.+|++
T Consensus       202 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  281 (337)
T cd07858         202 LLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSK  281 (337)
T ss_pred             HHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhh
Confidence            998   55332211000  0000                        00000   0112345677889999999999999


Q ss_pred             CCCHHHHhcCCCCCCCcCc
Q 002736          313 RPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       313 Rps~~eil~h~~~~~~~~~  331 (886)
                      |||+.++++||||.....+
T Consensus       282 Rps~~ell~h~~~~~~~~~  300 (337)
T cd07858         282 RITVEEALAHPYLASLHDP  300 (337)
T ss_pred             ccCHHHHHcCcchhhhcCc
Confidence            9999999999999865433

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.94  E-value=3.4e-26  Score=266.82  Aligned_cols=189  Identities=17%  Similarity=0.226  Sum_probs=130.6

Q ss_pred             cCCceEEEEee-CCcchhhhhcCCCCCc-------------------ChHHHHHHHHHHHHHHHhhcccCeeecccCCcc
Q 002736           53 AIDPFVHAIEW-GDVSLRQWLDKPKRSV-------------------DVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSC  112 (886)
Q Consensus        53 ~~~~~~i~~e~-~g~sL~~~l~~~~~~l-------------------~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~N  112 (886)
                      ..+.++++||| .+++|.+++.......                   ....+..|+.||+.||.|||++||+||||||+|
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~N  285 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQN  285 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHH
Confidence            45678999999 7889999985432111                   234567899999999999999999999999999


Q ss_pred             eeecc-CCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCC
Q 002736          113 FVMSS-FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSS  191 (886)
Q Consensus       113 Ill~~-~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  191 (886)
                      ||++. .+.+||+|||+++.......                                                      
T Consensus       286 ILl~~~~~~~KL~DFGlA~~l~~~~~------------------------------------------------------  311 (566)
T PLN03225        286 IIFSEGSGSFKIIDLGAAADLRVGIN------------------------------------------------------  311 (566)
T ss_pred             EEEeCCCCcEEEEeCCCccccccccc------------------------------------------------------
Confidence            99985 57899999999964321100                                                      


Q ss_pred             ccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC----------------------C
Q 002736          192 AYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP----------------------V  249 (886)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~----------------------~  249 (886)
                                                         ......++++.|+|||.+....                      +
T Consensus       312 -----------------------------------~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~  356 (566)
T PLN03225        312 -----------------------------------YIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNL  356 (566)
T ss_pred             -----------------------------------cCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccC
Confidence                                               0011237788999999664322                      3


Q ss_pred             CcccccchHHHHHHHHhcCCCCCchh-hHHhHhhccCCC-------------Chhhh-------ccChhhHHHHHHccCC
Q 002736          250 SCASDIYRLGVLLFELFCPFSTGEEK-TRTMSSLRHRVL-------------PPQLL-------LKFPKEASFCLWLLHP  308 (886)
Q Consensus       250 s~~sDIwSlGvil~eLl~pf~~~~~~-~~~~~~~~~~~~-------------~~~~~-------~~~~~~~~li~~~L~~  308 (886)
                      +.++|||||||+||||++|....... ......+.....             .+...       .......+||.+||.+
T Consensus       357 ~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~  436 (566)
T PLN03225        357 PDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRF  436 (566)
T ss_pred             CCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccC
Confidence            45679999999999999944333222 222222111100             00000       0112234899999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcC
Q 002736          309 EPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       309 dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      ||.+|||+.|+|+||||.....
T Consensus       437 dP~kR~ta~e~L~Hpff~~~~~  458 (566)
T PLN03225        437 KGRQRISAKAALAHPYFDREGL  458 (566)
T ss_pred             CcccCCCHHHHhCCcCcCCCCc
Confidence            9999999999999999987543

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.94  E-value=1.5e-26  Score=247.53  Aligned_cols=202  Identities=19%  Similarity=0.198  Sum_probs=152.3

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCc--ChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSV--DVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l--~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ..+....|++++..++ ++.   ..+.+++++|| .|++|.+++......+  ++..+..++.||+.||.|||++||+||
T Consensus        57 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~  132 (268)
T cd06624          57 ALHSYLKHRNIVQYLG-SDS---ENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHR  132 (268)
T ss_pred             HHHHhcCCCCeeeeee-eec---cCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeec
Confidence            3445568888888776 443   34678899998 7899999996543445  889999999999999999999999999


Q ss_pred             ccCCcceeecc-CCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          107 NVRPSCFVMSS-FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       107 DlkP~NIll~~-~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      ||||+||+++. .+.++++|||++........                                                
T Consensus       133 dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~------------------------------------------------  164 (268)
T cd06624         133 DIKGDNVLVNTYSGVVKISDFGTSKRLAGINP------------------------------------------------  164 (268)
T ss_pred             CCCHHHEEEcCCCCeEEEecchhheecccCCC------------------------------------------------
Confidence            99999999975 67899999998854321100                                                


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC--CCcccccchHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP--VSCASDIYRLGVLLF  263 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~--~s~~sDIwSlGvil~  263 (886)
                                                                ......|++.|+|||.+.+..  ++.++|||||||++|
T Consensus       165 ------------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~  202 (268)
T cd06624         165 ------------------------------------------CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIV  202 (268)
T ss_pred             ------------------------------------------ccccCCCCccccChhhhccccccCCchhhhHHHHHHHH
Confidence                                                      000124678899999987644  789999999999999


Q ss_pred             HHhc---CCCCCchhhHHhHhh-ccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          264 ELFC---PFSTGEEKTRTMSSL-RHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      +|++   ||.........+... .....+.......+++.+|+.+||..+|.+|||+.|++.||||
T Consensus       203 ~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         203 EMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             HHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence            9999   665433222222221 1122233333456778899999999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-24  Score=216.53  Aligned_cols=243  Identities=17%  Similarity=0.296  Sum_probs=203.2

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCC-CCCeEEEecCCCc
Q 002736          563 DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSY-IKSQIASSNFEGV  641 (886)
Q Consensus       563 ~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~-~~~~las~s~Dg~  641 (886)
                      .+..|.++|++++.+  +.++|+||.|-+|+|||+....       ..-....|.+.|+++.|.+. +.+.|+||+.||.
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~-------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK-------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchh-------hhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence            446799999999987  6899999999999999998631       12233468899999999763 3458999999999


Q ss_pred             EEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCC
Q 002736          642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDS  721 (886)
Q Consensus       642 V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  721 (886)
                      |.+|++.....+..+++|.+.|+.++++| .+.+.++.+.|+.+++||+-.       +..-...+.+.....|.|+|. 
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~-------Gr~a~v~~L~~~at~v~w~~~-  179 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVR-------GRVAFVLNLKNKATLVSWSPQ-  179 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhc-------CccceeeccCCcceeeEEcCC-
Confidence            99999999999999999999999999999 889999999999999999988       554444555555566999999 


Q ss_pred             CcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCC
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN  801 (886)
Q Consensus       722 ~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~  801 (886)
                      |.+|+.++.+ .|-+|.+.+.+.  .........+.++.|.++.+|++|+.|+.|++||....      .|+..+.+|.+
T Consensus       180 Gd~F~v~~~~-~i~i~q~d~A~v--~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~------~~~~~~~AH~~  250 (362)
T KOG0294|consen  180 GDHFVVSGRN-KIDIYQLDNASV--FREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSD------TPLTEFLAHEN  250 (362)
T ss_pred             CCEEEEEecc-EEEEEecccHhH--hhhhhccccceeeeecCCceEEEecCCceEEEeccCCC------ccceeeecchh
Confidence            8888888765 588999887763  22222336688999999999999999999999999985      67899999999


Q ss_pred             ceeEEEEe--cCCCEEEEEcCCCcEEEEecCCC
Q 002736          802 VKNFVGLS--VWDGYVATGSETNEVFVYHKAFP  832 (886)
Q Consensus       802 ~v~~v~~s--p~g~~lasgs~Dg~v~iwd~~~~  832 (886)
                      .|..+.+-  |++.||+|+|.||.|+|||+...
T Consensus       251 RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  251 RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99998743  55789999999999999999875

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.6e-26  Score=246.08  Aligned_cols=196  Identities=16%  Similarity=0.240  Sum_probs=153.1

Q ss_pred             cccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCc
Q 002736           33 THGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS  111 (886)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~  111 (886)
                      ...+|++++..++ ++.   ..+.++++||| .|++|.+++... ..+++..+..++.||+.||.|||++||+|+||+|+
T Consensus        52 ~~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~  126 (260)
T cd05611          52 IQGESPYVAKLYY-SFQ---SKDYLYLVMEYLNGGDCASLIKTL-GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPE  126 (260)
T ss_pred             hcCCCCCeeeeee-eEE---cCCeEEEEEeccCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHH
Confidence            3447888888776 443   34678899999 789999999654 56899999999999999999999999999999999


Q ss_pred             ceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCC
Q 002736          112 CFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSS  191 (886)
Q Consensus       112 NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  191 (886)
                      ||+++.++.++++|||++......                                                        
T Consensus       127 nil~~~~~~~~l~dfg~~~~~~~~--------------------------------------------------------  150 (260)
T cd05611         127 NLLIDQTGHLKLTDFGLSRNGLEN--------------------------------------------------------  150 (260)
T ss_pred             HeEECCCCcEEEeecccceecccc--------------------------------------------------------
Confidence            999999999999999987432110                                                        


Q ss_pred             ccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---C
Q 002736          192 AYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---P  268 (886)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---p  268 (886)
                                                            ....|+..|+|||.+.+..++.++|||||||++|||++   |
T Consensus       151 --------------------------------------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p  192 (260)
T cd05611         151 --------------------------------------KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPP  192 (260)
T ss_pred             --------------------------------------ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCC
Confidence                                                  01256788999999988889999999999999999998   7


Q ss_pred             CCCCchhhHHhHhhccCC--CCh-hhhccChhhHHHHHHccCCCCCCCCC---HHHHhcCCCCCCC
Q 002736          269 FSTGEEKTRTMSSLRHRV--LPP-QLLLKFPKEASFCLWLLHPEPSGRPK---MGELLQSEFLNEP  328 (886)
Q Consensus       269 f~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~li~~~L~~dP~~Rps---~~eil~h~~~~~~  328 (886)
                      |...... .....+....  .++ .....++.+.+++.+||..+|.+||+   +.|++.||||...
T Consensus       193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~~~~  257 (260)
T cd05611         193 FHAETPD-AVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKSI  257 (260)
T ss_pred             CCCCCHH-HHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcChHhhcC
Confidence            7544333 2222222211  122 22245678889999999999999995   4799999999764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-27  Score=258.45  Aligned_cols=205  Identities=17%  Similarity=0.202  Sum_probs=153.4

Q ss_pred             cccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhc
Q 002736           21 FELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      ..||.|+..+.-  -.|.|++.|+| +|-.    +.+.|+.-+ .|.+|..+|.-...+|.....+.|++||++|++|||
T Consensus       433 qaFKnEVa~lkk--TRH~NIlLFMG-~~~~----p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLH  505 (678)
T KOG0193|consen  433 QAFKNEVAVLKK--TRHENILLFMG-ACMN----PPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLH  505 (678)
T ss_pred             HHHHHHHHHHhh--cchhhheeeeh-hhcC----CceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhh
Confidence            456777655444  46888877777 6643    333555555 888999999766678999999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      .++|||||||..||+|.+++.|||+|||++.....-.-+                                .        
T Consensus       506 AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~--------------------------------~--------  545 (678)
T KOG0193|consen  506 AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGE--------------------------------Q--------  545 (678)
T ss_pred             hhhhhhhhccccceEEccCCcEEEecccceeeeeeeccc--------------------------------c--------
Confidence            999999999999999999999999999998532111000                                0        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC---CCCCcccccc
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG---APVSCASDIY  256 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~---~~~s~~sDIw  256 (886)
                                                                      ......|...|||||++..   .+|++.||||
T Consensus       546 ------------------------------------------------q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVY  577 (678)
T KOG0193|consen  546 ------------------------------------------------QLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVY  577 (678)
T ss_pred             ------------------------------------------------ccCCCccchhhhcHHHHhhcccCCCCcccchh
Confidence                                                            0011156777999999964   4599999999


Q ss_pred             hHHHHHHHHhc---CCCCCchhhHHhHhhccCCCChh----hhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          257 RLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ----LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       257 SlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ||||++|||+|   ||. .+.....+..+-.+...+.    ..++..++++|+..||.++|++||.+.+||.
T Consensus       578 aFGiV~YELltg~lPys-i~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  578 AFGIVWYELLTGELPYS-IQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             hhhHHHHHHHhCcCCcC-CCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHH
Confidence            99999999999   887 4444433333333322222    2234447889999999999999999999886

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=2.4e-26  Score=249.09  Aligned_cols=199  Identities=16%  Similarity=0.125  Sum_probs=156.9

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.   ..+.++++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++||+|+||+
T Consensus        54 ~l~~l~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~  128 (290)
T cd05580          54 ILQSIRHPFLVNLYG-SFQ---DDSNLYLVMEYVPGGELFSHLRKS-GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLK  128 (290)
T ss_pred             HHHhCCCCCccceee-EEE---cCCeEEEEEecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC
Confidence            445556888888776 332   34678899999 599999999665 578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++......                                                      
T Consensus       129 p~nili~~~~~~kl~dfg~~~~~~~~------------------------------------------------------  154 (290)
T cd05580         129 PENLLLDSDGYIKITDFGFAKRVKGR------------------------------------------------------  154 (290)
T ss_pred             HHHEEECCCCCEEEeeCCCccccCCC------------------------------------------------------
Confidence            99999999999999999988543111                                                      


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                             .....|++.|+|||.+.+..++.++||||||+++|+|++  
T Consensus       155 ---------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  195 (290)
T cd05580         155 ---------------------------------------TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGY  195 (290)
T ss_pred             ---------------------------------------CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCC
Confidence                                                   001257888999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCCc
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~~  329 (886)
                       ||.......... .+.... ++......+.+.+++.+||..+|.+|+     +++|+++||||....
T Consensus       196 ~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  261 (290)
T cd05580         196 PPFFDDNPIQIYE-KILEGK-VRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGID  261 (290)
T ss_pred             CCCCCCCHHHHHH-HHhcCC-ccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence             775544322222 222221 122233467888999999999999998     899999999997654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.94  E-value=3.6e-26  Score=250.99  Aligned_cols=202  Identities=16%  Similarity=0.135  Sum_probs=156.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++..++ +|.+   .+.++++|||..++|.+++......+++.++..++.||+.||.|||++||+||||+
T Consensus        77 ~~l~~l~h~~iv~~~~-~~~~---~~~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~  152 (317)
T cd06635          77 KFLQRIKHPNSIEYKG-CYLR---EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK  152 (317)
T ss_pred             HHHHhCCCCCEEEEEE-EEee---CCeEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            3445567888888776 4443   45688999997789988886555678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++......                                                      
T Consensus       153 p~Nil~~~~~~~kl~dfg~~~~~~~~------------------------------------------------------  178 (317)
T cd06635         153 AGNILLTEPGQVKLADFGSASIASPA------------------------------------------------------  178 (317)
T ss_pred             cccEEECCCCCEEEecCCCccccCCc------------------------------------------------------
Confidence            99999999999999999987432110                                                      


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---CCCCCcccccchHHHHHHHHh
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---GAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                              ....|++.|+|||.+.   +..++.++|||||||++|||+
T Consensus       179 ----------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~  218 (317)
T cd06635         179 ----------------------------------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA  218 (317)
T ss_pred             ----------------------------------------ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHH
Confidence                                                    0125688899999974   345899999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                      +   ||..................+.......+.+.+++.+||+.+|.+||++.++++|+|+....
T Consensus       219 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  284 (317)
T cd06635         219 ERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRER  284 (317)
T ss_pred             hCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhccC
Confidence            8   77655443333333333322222233456788999999999999999999999999986543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.94  E-value=2.3e-26  Score=245.39  Aligned_cols=196  Identities=19%  Similarity=0.184  Sum_probs=151.1

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      +...+|++++..++ +|.   ..+.++++||| .+++|.+++... ...+++..++.++.||+.||.|||++||+|||||
T Consensus        56 l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk  131 (263)
T cd05052          56 MKEIKHPNLVQLLG-VCT---REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA  131 (263)
T ss_pred             HHhCCCCChhheEE-EEc---CCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccC
Confidence            33457888888776 443   34678899998 789999999543 3468999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++.........                                                   
T Consensus       132 p~nil~~~~~~~kl~df~~~~~~~~~~~~---------------------------------------------------  160 (263)
T cd05052         132 ARNCLVGENHLVKVADFGLSRLMTGDTYT---------------------------------------------------  160 (263)
T ss_pred             cceEEEcCCCcEEeCCCccccccccceee---------------------------------------------------
Confidence            99999999999999999998543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       161 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g  202 (263)
T cd05052         161 --------------------------------------AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG  202 (263)
T ss_pred             --------------------------------------ccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCC
Confidence                                                  0000123567999999988889999999999999999996  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||.. .........+.....++.....++.+.+++.+||..+|++||++.++++
T Consensus       203 ~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         203 MSPYPG-IDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             CCCCCC-CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence              5543 3333444444444444444556778899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.94  E-value=1.3e-26  Score=251.30  Aligned_cols=202  Identities=18%  Similarity=0.260  Sum_probs=149.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++..++ ++.   ..+.++++|||.+++|.+++......+++.+++.++.||+.||.|||++||+|+|||
T Consensus        55 ~~l~~l~h~ni~~~~~-~~~---~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk  130 (291)
T cd07870          55 SLLKGLKHANIVLLHD-IIH---TKETLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLK  130 (291)
T ss_pred             HHHHhcCCCCEeEEEE-EEe---cCCeEEEEEecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            3455567888877666 333   345788999998889988886554567899999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||+++.......                                                    
T Consensus       131 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~----------------------------------------------------  158 (291)
T cd07870         131 PQNLLISYLGELKLADFGLARAKSIPSQ----------------------------------------------------  158 (291)
T ss_pred             hHHEEEcCCCcEEEeccccccccCCCCC----------------------------------------------------
Confidence            9999999999999999999854321100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ......+++.|+|||.+.+. .++.++|||||||++|||++ 
T Consensus       159 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g  200 (291)
T cd07870         159 --------------------------------------TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQG  200 (291)
T ss_pred             --------------------------------------CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                  00011568889999998764 47889999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhcc---------------------C----CCChhh------hccChhhHHHHHHccCCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRH---------------------R----VLPPQL------LLKFPKEASFCLWLLHPEPSGRP  314 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~---------------------~----~~~~~~------~~~~~~~~~li~~~L~~dP~~Rp  314 (886)
                        ||...............                     .    ..+...      ....+.+.+++.+||..||++||
T Consensus       201 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~  280 (291)
T cd07870         201 QPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRI  280 (291)
T ss_pred             CCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCc
Confidence              66544332222111100                     0    000000      11245677999999999999999


Q ss_pred             CHHHHhcCCCC
Q 002736          315 KMGELLQSEFL  325 (886)
Q Consensus       315 s~~eil~h~~~  325 (886)
                      |+.|++.||||
T Consensus       281 t~~~~l~h~~~  291 (291)
T cd07870         281 SAQDALLHPYF  291 (291)
T ss_pred             CHHHHhcCCCC
Confidence            99999999997

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7.6e-25  Score=217.31  Aligned_cols=247  Identities=21%  Similarity=0.307  Sum_probs=200.5

Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCC-ceE-EEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSR-SQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t-~~~-~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      .....|++|+|+|....+++.||+||+|++|+++. +.. .+....|.++|.+++|+. +++.+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence            35678999999998889999999999999999986 332 244567999999999995 999999999999999999998


Q ss_pred             hhhhhccCceeeeeecCCCeEEEEEeCCCCc--EEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEecCCCEEEEE
Q 002736          693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGR--SLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSA  770 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~--~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~~~~~l~sg  770 (886)
                             ++....-.|.++|.++.|-+. ..  .|++||.|.+|++||.|... |+.++.-. ..|+++.. -..+++.|
T Consensus       104 -------~Q~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LP-eRvYa~Dv-~~pm~vVa  172 (347)
T KOG0647|consen  104 -------GQVSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLP-ERVYAADV-LYPMAVVA  172 (347)
T ss_pred             -------CCeeeeeecccceeEEEEecC-CCcceeEecccccceeecccCCCC-eeeeeecc-ceeeehhc-cCceeEEE
Confidence                   666666667889999999776 44  89999999999999999876 57777643 34666554 34577888


Q ss_pred             ECCCcEEEEeCCCCCccccCCCceEeecC----CCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCC
Q 002736          771 STDNTLKLWDLSMCTSRVIDTPLHSFTGH----TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL  846 (886)
Q Consensus       771 s~Dg~i~lwd~~~~~~~~~~~~~~~~~~h----~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~  846 (886)
                      ..+..|.+|+++.+.        ..++.+    .-.++||++.++.+-.|.||-.|.+.|.++..+.+...|.|.+....
T Consensus       173 ta~r~i~vynL~n~~--------te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~  244 (347)
T KOG0647|consen  173 TAERHIAVYNLENPP--------TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRST  244 (347)
T ss_pred             ecCCcEEEEEcCCCc--------chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccC
Confidence            899999999998653        222223    23488999999988889999999999999999887777877765421


Q ss_pred             CCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          847 SGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       847 ~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                      -+  ..+.-..|++|+|+|.-. .|+|+|+||++.+||
T Consensus       245 ~~--~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  245 NS--VNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWD  279 (347)
T ss_pred             CC--CCCceEEecceEeecccc-eEEEecCCceEEEec
Confidence            11  223456799999999888 999999999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8e-24  Score=201.11  Aligned_cols=291  Identities=18%  Similarity=0.276  Sum_probs=225.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccC---cccccccc-eEE----ecCCCCeeeEEEeCCCCCeEEEecC
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN---ENRDIHYP-VVE----MASRSKLSSICWNSYIKSQIASSNF  638 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~---~~~~~~~~-~~~----~~~~~~I~~l~~~~~~~~~las~s~  638 (886)
                      .+..|++++|+|.|.+.|.|+..++++|..+.....   .++...+| .+.    -.|++.|.|++|+| .+++||+|+.
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgsn  109 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGSN  109 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecCC
Confidence            467899999999999999999999999987655322   22222333 222    24888999999999 7999999999


Q ss_pred             CCcEEEEECCCc--eE---EEEecccCCcEEEEEEcc---CCCCEEEEEe-CCCcEEEEeCchhhhhhccCceeeeeec-
Q 002736          639 EGVVQVWDVSRS--QV---LTEMREHERRVWSIDFSS---ADPTLLASGS-DDGSVKLWSINQAILLLHLGVSIGTIKT-  708 (886)
Q Consensus       639 Dg~V~iWd~~t~--~~---~~~~~~h~~~v~~v~~~p---~~~~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-  708 (886)
                      |.+|++.-.+..  +.   -.+|..|.+.|..++|..   ..+.+|++++ .|+.|.+-|..+       +...+.+.. 
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~-------g~~~~a~sgh  182 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR-------GQGFHALSGH  182 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-------CCcceeecCC
Confidence            999999765433  22   256778999999999963   1245777654 467788888877       665555554 


Q ss_pred             CCCeEEE-EEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEec--C-----CCCeEEEEec-CCCEEEEEECCCcEEEE
Q 002736          709 KANVCCV-QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIG--H-----NKTVSYVKFV-DATTLVSASTDNTLKLW  779 (886)
Q Consensus       709 ~~~v~~v-~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~--h-----~~~V~~v~f~-~~~~l~sgs~Dg~i~lw  779 (886)
                      .+.|.++ .|+   +..+++|+.|.+|++||+|-+.. +.++..  |     ..+|.+|+.. .|.+|++|-.|..+.+|
T Consensus       183 tghilalyswn---~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  183 TGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             cccEEEEEEec---CcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            3445554 343   77999999999999999997763 554431  2     2678888884 89999999999999999


Q ss_pred             eCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEE
Q 002736          780 DLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFIS  859 (886)
Q Consensus       780 d~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  859 (886)
                      |++.+      ++++.|..|+..|.+|.|||..-|+.+||.|..|++-|+...- ...        ++..-...|...+.
T Consensus       259 dirg~------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl-a~e--------l~~~vv~ehkdk~i  323 (350)
T KOG0641|consen  259 DIRGG------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL-AHE--------LPIMVVAEHKDKAI  323 (350)
T ss_pred             EeeCC------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch-hhc--------CceEEEEeccCceE
Confidence            99987      6799999999999999999999999999999999999986421 000        01111245777899


Q ss_pred             EEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          860 SVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       860 ~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      .+.|+|+.- .+++.+.|.++.+|.+
T Consensus       324 ~~rwh~~d~-sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  324 QCRWHPQDF-SFISSSADKTATLWAL  348 (350)
T ss_pred             EEEecCccc-eeeeccCcceEEEecc
Confidence            999999998 8999999999999975

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=3.8e-26  Score=247.08  Aligned_cols=207  Identities=17%  Similarity=0.208  Sum_probs=154.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhc---CCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLD---KPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~---~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ..+...+|++++..++ ++.++ ..+.++++||| .|++|.+++.   .....+++..+..++.||+.||.|||++||+|
T Consensus        51 ~~l~~l~h~~iv~~~~-~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H  128 (287)
T cd06621          51 EINKSCKSPYIVKYYG-AFLDE-SSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIH  128 (287)
T ss_pred             HHHHhCCCCCeeeeee-EEEcc-CCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            3455668898888776 44333 34568899999 7889988763   23456899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      +||+|+||+++.++.++++|||++.......                                                 
T Consensus       129 ~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-------------------------------------------------  159 (287)
T cd06621         129 RDIKPSNILLTRKGQVKLCDFGVSGELVNSL-------------------------------------------------  159 (287)
T ss_pred             CCCCHHHEEEecCCeEEEeeccccccccccc-------------------------------------------------
Confidence            9999999999999999999999984331110                                                 


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                 .....++..|+|||.+.+..++.++|||||||++|||
T Consensus       160 -------------------------------------------~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l  196 (287)
T cd06621         160 -------------------------------------------AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEV  196 (287)
T ss_pred             -------------------------------------------cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHH
Confidence                                                       0012457789999999888899999999999999999


Q ss_pred             hc---CCCCCc----hhhHHhHhhccCCCChhh------hccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          266 FC---PFSTGE----EKTRTMSSLRHRVLPPQL------LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       266 l~---pf~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      ++   ||....    ........+.....+...      ....+.+.+|+.+||.++|.+|||+.|+++||||.....
T Consensus       197 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~  274 (287)
T cd06621         197 AQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQMK  274 (287)
T ss_pred             HhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCcccccccc
Confidence            99   665431    111222222221111110      112346789999999999999999999999999966543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-26  Score=251.84  Aligned_cols=202  Identities=15%  Similarity=0.252  Sum_probs=149.8

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++...+ ++.   ..+.++++|||.+++|.+++.+....+++..++.++.||+.||.|||++||+|||||
T Consensus        55 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~  130 (291)
T cd07844          55 SLLKDLKHANIVTLHD-IIH---TKKTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLK  130 (291)
T ss_pred             HHHhhCCCcceeeEEE-EEe---cCCeEEEEEecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCC
Confidence            3445567888887666 433   346789999997789999997665678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++........                                                    
T Consensus       131 p~nil~~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------------  158 (291)
T cd07844         131 PQNLLISERGELKLADFGLARAKSVPSK----------------------------------------------------  158 (291)
T ss_pred             HHHEEEcCCCCEEECccccccccCCCCc----------------------------------------------------
Confidence            9999999999999999999843211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ......++..|+|||.+.+ ..++.++|||||||++|||++ 
T Consensus       159 --------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g  200 (291)
T cd07844         159 --------------------------------------TYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATG  200 (291)
T ss_pred             --------------------------------------cccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhC
Confidence                                                  0001145778999999876 458999999999999999998 


Q ss_pred             --CCCCCchhhHHhHhhc---cC---------------------CC-Chh----hhccC--hhhHHHHHHccCCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLR---HR---------------------VL-PPQ----LLLKF--PKEASFCLWLLHPEPSGRP  314 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~---~~---------------------~~-~~~----~~~~~--~~~~~li~~~L~~dP~~Rp  314 (886)
                        ||............+.   ..                     .. +..    .....  +.+.+++.+||+++|.+||
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rp  280 (291)
T cd07844         201 RPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRI  280 (291)
T ss_pred             CCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCccccc
Confidence              6644332211111100   00                     00 000    01122  5667999999999999999


Q ss_pred             CHHHHhcCCCC
Q 002736          315 KMGELLQSEFL  325 (886)
Q Consensus       315 s~~eil~h~~~  325 (886)
                      |+.++++||||
T Consensus       281 s~~e~l~~~~f  291 (291)
T cd07844         281 SAAEAMKHPYF  291 (291)
T ss_pred             CHHHHhcCCCC
Confidence            99999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.94  E-value=2.3e-26  Score=245.14  Aligned_cols=202  Identities=16%  Similarity=0.115  Sum_probs=150.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ +|..  ..+.++++||| .+++|.+++.+....+++..+..++.||+.||.|||++||+|||||
T Consensus        49 ~l~~l~h~~iv~~~~-~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  125 (262)
T cd05058          49 IMKDFSHPNVLSLLG-ICLP--SEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLA  125 (262)
T ss_pred             HHccCCCCCcceEEE-Eeec--CCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccC
Confidence            345568888888766 5542  23456788888 8899999997655567888899999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+|++|||+++..........                                                 
T Consensus       126 ~~nili~~~~~~kl~dfg~~~~~~~~~~~~~-------------------------------------------------  156 (262)
T cd05058         126 ARNCMLDESFTVKVADFGLARDIYDKEYYSV-------------------------------------------------  156 (262)
T ss_pred             cceEEEcCCCcEEECCccccccccCCcceee-------------------------------------------------
Confidence            9999999999999999999854321100000                                                 


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           .......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       157 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~  199 (262)
T cd05058         157 -------------------------------------HNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRG  199 (262)
T ss_pred             -------------------------------------cccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCC
Confidence                                                 00001144667999999988889999999999999999998  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                       |++...........+.....++.....++.+.+++.+||..+|++||++.++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~  254 (262)
T cd05058         200 APPYPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVS  254 (262)
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence             333333333333333333333333334567889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.94  E-value=1.9e-26  Score=246.67  Aligned_cols=207  Identities=17%  Similarity=0.216  Sum_probs=155.1

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+....|++++..++ ++.   ..+.++++||| .|++|.++|.+. ..+++..+..++.||+.||.|||++||+|+|
T Consensus        54 ~~~l~~l~h~~iv~~~~-~~~---~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~  128 (268)
T cd06630          54 IRLMARLNHPHIIRMLG-ATC---EDSHFNLFVEWMAGGSVSHLLSKY-GAFKEAVIINYTEQLLRGLSYLHENQIIHRD  128 (268)
T ss_pred             HHHHHHcCCCceehhhc-eec---cCCeEEEEEeccCCCcHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            33445567888888777 443   34578888898 889999999654 5789999999999999999999999999999


Q ss_pred             cCCcceeeccCC-ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          108 VRPSCFVMSSFN-HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       108 lkP~NIll~~~~-~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      |||+||+++..+ .+|++|||.+...........                                              
T Consensus       129 i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~----------------------------------------------  162 (268)
T cd06630         129 VKGANLLIDSTGQRLRIADFGAAARLAAKGTGAG----------------------------------------------  162 (268)
T ss_pred             CCHHHEEEcCCCCEEEEcccccccccccccccCC----------------------------------------------
Confidence            999999998776 599999999854422100000                                              


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                              .......|+..|+|||.+.+..++.++|||||||++|+|+
T Consensus       163 ----------------------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~  202 (268)
T cd06630         163 ----------------------------------------EFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMA  202 (268)
T ss_pred             ----------------------------------------ccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHH
Confidence                                                    0001126788899999998888999999999999999999


Q ss_pred             c---CCCCCch--hhHHhHhhc-cCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          267 C---PFSTGEE--KTRTMSSLR-HRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       267 ~---pf~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                      +   ||.....  ....+.... ....+.......+.+.+++.+||..+|.+||++.++++||||.
T Consensus       203 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         203 TAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             hCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence            9   6643322  112221211 1222333334567888999999999999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.94  E-value=2.3e-26  Score=243.67  Aligned_cols=204  Identities=15%  Similarity=0.189  Sum_probs=152.3

Q ss_pred             cccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhccc
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      |+.|..  .+...+|++++..++ +|.+   ...++++||| .+++|.+++.+....+++.+++.++.||+.||.|||++
T Consensus        40 ~~~e~~--~l~~l~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~  113 (252)
T cd05084          40 FLQEAR--ILKQYSHPNIVRLIG-VCTQ---KQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESK  113 (252)
T ss_pred             HHHHHH--HHHhCCCCCcceEEE-EEcC---CCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            444433  344567888888666 5543   4568899998 78999999966555689999999999999999999999


Q ss_pred             CeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcc
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  181 (886)
                      ||+||||||+||+++.++.+|++|||++.........                                     .     
T Consensus       114 ~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~-------------------------------------~-----  151 (252)
T cd05084         114 HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYA-------------------------------------S-----  151 (252)
T ss_pred             CccccccchheEEEcCCCcEEECccccCccccccccc-------------------------------------c-----
Confidence            9999999999999999999999999998533110000                                     0     


Q ss_pred             ccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHH
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvi  261 (886)
                                                                    .......+..|+|||.+.+..++.++|||||||+
T Consensus       152 ----------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i  185 (252)
T cd05084         152 ----------------------------------------------TGGMKQIPVKWTAPEALNYGRYSSESDVWSFGIL  185 (252)
T ss_pred             ----------------------------------------------cCCCCCCceeecCchhhcCCCCChHHHHHHHHHH
Confidence                                                          0000012346999999998889999999999999


Q ss_pred             HHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       262 l~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +|||++    ||..... ......+.....++.....+..+.+|+.+||+++|.+||++.++++
T Consensus       186 l~e~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         186 LWEAFSLGAVPYANLSN-QQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             HHHHHhCCCCCccccCH-HHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            999996    5543332 2233333333333333445677889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.94  E-value=7.7e-27  Score=249.61  Aligned_cols=200  Identities=16%  Similarity=0.206  Sum_probs=150.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .+++|.+++.+. ..+++..+..++.||+.||.|||+.||+||||
T Consensus        58 ~~l~~~~h~~ii~~~~-~~~---~~~~~~iv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl  132 (267)
T cd06646          58 FMVKECKHCNIVAYFG-SYL---SREKLWICMEYCGGGSLQDIYHVT-GPLSELQIAYVCRETLQGLAYLHSKGKMHRDI  132 (267)
T ss_pred             HHHHhcCCCCeeeeeE-EEE---eCCEEEEEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCC
Confidence            3455678899888777 443   34578899999 778999998544 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++........                                                   
T Consensus       133 ~p~nill~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------  161 (267)
T cd06646         133 KGANILLTDNGDVKLADFGVAAKITATIA---------------------------------------------------  161 (267)
T ss_pred             CHHHEEECCCCCEEECcCccceeeccccc---------------------------------------------------
Confidence            99999999999999999999854311100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC---CCCCCcccccchHHHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA---GAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~sDIwSlGvil~eL  265 (886)
                                                             ......|+..|+|||.+.   ...++.++|||||||++|||
T Consensus       162 ---------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el  202 (267)
T cd06646         162 ---------------------------------------KRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIEL  202 (267)
T ss_pred             ---------------------------------------ccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHH
Confidence                                                   001125788899999885   34478899999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCCChhh---hccChhhHHHHHHccCCCCCCCCCHHHHhcCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVLPPQL---LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEF  324 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~  324 (886)
                      ++   ||..................++.+   ...++.+.+|+.+||..+|.+||+++++++|+|
T Consensus       203 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         203 AELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             HhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence            98   664433222221111111122222   234567889999999999999999999999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.94  E-value=2.1e-26  Score=247.67  Aligned_cols=203  Identities=17%  Similarity=0.180  Sum_probs=157.0

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+.+.+|++++..++ ++.   ..+.++++||| .|++|.+++..  ..+++..+..++.||+.||+|||+.||+|+|
T Consensus        53 ~~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~i~~--~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~d  126 (277)
T cd06640          53 ITVLSQCDSPYVTKYYG-SYL---KGTKLWIIMEYLGGGSALDLLRA--GPFDEFQIATMLKEILKGLDYLHSEKKIHRD  126 (277)
T ss_pred             HHHHHhCCCCCEeeEEE-EEE---ECCEEEEEEecCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCcC
Confidence            33455678888888777 443   34678999999 78899999965  4689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |+|+||+++.++.++++|||++........                                                  
T Consensus       127 l~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--------------------------------------------------  156 (277)
T cd06640         127 IKAANVLLSEQGDVKLADFGVAGQLTDTQI--------------------------------------------------  156 (277)
T ss_pred             CChhhEEEcCCCCEEEcccccceeccCCcc--------------------------------------------------
Confidence            999999999999999999999853321100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......++.+|+|||.+.+..++.++|+|||||++|||++
T Consensus       157 ----------------------------------------~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~t  196 (277)
T cd06640         157 ----------------------------------------KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAK  196 (277)
T ss_pred             ----------------------------------------ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHH
Confidence                                                    0001256888999999988889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                         ||....... ....+.....+.......+.+.+++.+||..+|.+||++.++++|+||...
T Consensus       197 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  259 (277)
T cd06640         197 GEPPNSDMHPMR-VLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKN  259 (277)
T ss_pred             CCCCCCCcChHh-HhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhChHhhhc
Confidence               554333222 222222222333333445678899999999999999999999999998654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4.9e-27  Score=253.67  Aligned_cols=252  Identities=12%  Similarity=0.157  Sum_probs=165.8

Q ss_pred             cccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhc
Q 002736           21 FELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .+.+.|+|.+  +..+..-+|++|.    .....+.+|.+|+| .||++..+|.+. +.|.+..++.|+..+..||++.|
T Consensus       674 aHVKAERDIL--AEADn~WVVrLyy----SFQDkdnLYFVMdYIPGGDmMSLLIrm-gIFeE~LARFYIAEltcAiesVH  746 (1034)
T KOG0608|consen  674 AHVKAERDIL--AEADNEWVVRLYY----SFQDKDNLYFVMDYIPGGDMMSLLIRM-GIFEEDLARFYIAELTCAIESVH  746 (1034)
T ss_pred             hhhhhhhhhH--hhcCCcceEEEEE----EeccCCceEEEEeccCCccHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHH
Confidence            4456677764  4456677777777    34456889999999 999999998665 68899999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhh-c-ccccccccccCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRT-R-LRREDLQLVTAP  177 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~d~~~~~~~  177 (886)
                      ..|+|||||||+||||+.+|+|||+|||+|.-+...-.                     ..-++. . ...+.+.+    
T Consensus       747 kmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHd---------------------skYYq~gdH~RqDSmep----  801 (1034)
T KOG0608|consen  747 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHD---------------------SKYYQEGDHHRQDSMEP----  801 (1034)
T ss_pred             hccceecccCccceEEccCCceeeeeccccccceeccc---------------------cccccCCCccccccCCC----
Confidence            99999999999999999999999999999976532210                     000000 0 00000000    


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccch
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwS  257 (886)
                      ..++++.                  ....+.+.++-.  ..+.+-.     .-.++||+.|+|||++....|+..+|+||
T Consensus       802 ~~e~~d~------------------~~~lkvL~~ra~--~~h~r~~-----ahslvgt~nyiapevl~r~g~~q~cdwws  856 (1034)
T KOG0608|consen  802 SPEWADI------------------SKCLKVLERRAM--RQHQRIL-----AHSLVGTPNYIAPEVLARTGYTQLCDWWS  856 (1034)
T ss_pred             chhhccc------------------cccchHHHHHHH--hhhhhhh-----hhhhcCCCcccChHHhcccCccccchhhH
Confidence            0000000                  000111111100  0000011     11259999999999999999999999999


Q ss_pred             HHHHHHHHhc---CCCCCchhhHHhHhhc--cCCCChhhhccChhhHHHHHHccCCCCCCCC---CHHHHhcCCCCCCCc
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMSSLR--HRVLPPQLLLKFPKEASFCLWLLHPEPSGRP---KMGELLQSEFLNEPR  329 (886)
Q Consensus       258 lGvil~eLl~---pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp---s~~eil~h~~~~~~~  329 (886)
                      .|||||||+.   ||.........+..+.  ...-.+.-...++++.++|.+++ .++..|.   .++|+..||||+...
T Consensus       857 ~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~ls~e~~~li~kLc-~sad~RLGkng~d~vKaHpfFkgID  935 (1034)
T KOG0608|consen  857 VGVILYEMLVGQPPFLADTPGETQYKVINWRNFLHIPYQGNLSKEALDLIQKLC-CSADSRLGKNGADQVKAHPFFKGID  935 (1034)
T ss_pred             hhHHHHHHhhCCCCccCCCCCcceeeeeehhhccccccccccCHHHHHHHHHHh-cChhhhhcccchhhhhcCccccccc
Confidence            9999999998   7755443333332221  11112233445678888887754 4667784   478899999999864


Q ss_pred             C
Q 002736          330 D  330 (886)
Q Consensus       330 ~  330 (886)
                      .
T Consensus       936 f  936 (1034)
T KOG0608|consen  936 F  936 (1034)
T ss_pred             h
Confidence            3

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.94  E-value=1.4e-26  Score=246.13  Aligned_cols=199  Identities=14%  Similarity=0.133  Sum_probs=153.1

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+....|++++..++ +|.    .+.++++||| .+++|.+++......+++..++.++.||+.||.|||++||+||||
T Consensus        47 ~~l~~l~h~~ii~~~~-~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  121 (257)
T cd05115          47 EIMHQLDNPYIVRMIG-VCE----AEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDL  121 (257)
T ss_pred             HHHHhcCCCCeEEEEE-EEc----CCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeeccc
Confidence            3444567888888766 553    3467889998 789999999655567899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++.....+.....                                                
T Consensus       122 kp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~------------------------------------------------  153 (257)
T cd05115         122 AARNVLLVNQHYAKISDFGLSKALGADDSYYK------------------------------------------------  153 (257)
T ss_pred             chheEEEcCCCcEEeccCCccccccCCcccee------------------------------------------------
Confidence            99999999999999999999864322210000                                                


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ..+...++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       154 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~  194 (257)
T cd05115         154 ---------------------------------------ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSY  194 (257)
T ss_pred             ---------------------------------------ccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcC
Confidence                                                   0000123567999999988889999999999999999985 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||.... ....+..+.....++.....++++.+++.+||..+|++||++.++++
T Consensus       195 g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         195 GQKPYKKMK-GPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             CCCCcCcCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence               664443 33344444444444444556788889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.94  E-value=1.3e-26  Score=249.45  Aligned_cols=202  Identities=17%  Similarity=0.172  Sum_probs=154.5

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+...+|++++..++ .+.   ..+.++++||| .|++|.+++..  ..+++..++.++.||+.||.|||++||+|+|
T Consensus        53 ~~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~d  126 (277)
T cd06642          53 ITVLSQCDSPYITRYYG-SYL---KGTKLWIIMEYLGGGSALDLLKP--GPLEETYIATILREILKGLDYLHSERKIHRD  126 (277)
T ss_pred             HHHHHcCCCCccHhhhc-ccc---cCCceEEEEEccCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhcCCeeccC
Confidence            34455567888888777 333   34678999999 78899999854  4689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |+|+||+++.++.++++|||++........                                                  
T Consensus       127 l~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--------------------------------------------------  156 (277)
T cd06642         127 IKAANVLLSEQGDVKLADFGVAGQLTDTQI--------------------------------------------------  156 (277)
T ss_pred             CChheEEEeCCCCEEEccccccccccCcch--------------------------------------------------
Confidence            999999999999999999999854321100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......|+..|+|||.+.+..++.++|||||||++|||++
T Consensus       157 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t  196 (277)
T cd06642         157 ----------------------------------------KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAK  196 (277)
T ss_pred             ----------------------------------------hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHh
Confidence                                                    0011257888999999988889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                         ||....... ....+.....+.........+.+++.+||..+|.+||++.++++||||..
T Consensus       197 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~  258 (277)
T cd06642         197 GEPPNSDLHPMR-VLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITR  258 (277)
T ss_pred             CCCCCcccchhh-HHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHhHHHHH
Confidence               553332222 11122222222222234566789999999999999999999999999864

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.94  E-value=2.8e-26  Score=249.08  Aligned_cols=200  Identities=17%  Similarity=0.241  Sum_probs=146.3

Q ss_pred             ccccCCCCCCccccccc--cCCceEEEEeeCCcchhhhhcCC----CCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           36 DHLRNQGGLSGVCENEA--AIDPFVHAIEWGDVSLRQWLDKP----KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~--~~~~~~i~~e~~g~sL~~~l~~~----~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .|++++..++ ++....  ....+|++|||..++|.+++...    ...+++..++.++.||+.||.|||++||+|||||
T Consensus        59 ~~~~i~~~~~-~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~  137 (295)
T cd07837          59 ESIYIVRLLD-VEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLK  137 (295)
T ss_pred             CCCCccceee-eEeecCCCCCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC
Confidence            4577777665 333221  12347899999777999988432    2458999999999999999999999999999999


Q ss_pred             Ccceeecc-CCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          110 PSCFVMSS-FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       110 P~NIll~~-~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      |+||+++. .+.+|++|||++........                                                   
T Consensus       138 ~~nil~~~~~~~~kl~dfg~~~~~~~~~~---------------------------------------------------  166 (295)
T cd07837         138 PQNLLVDKQKGLLKIADLGLGRAFSIPVK---------------------------------------------------  166 (295)
T ss_pred             hHHEEEecCCCeEEEeecccceecCCCcc---------------------------------------------------
Confidence            99999998 88999999998853311100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......++++|+|||.+.+ ..++.++|||||||++|||++
T Consensus       167 ---------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~  207 (295)
T cd07837         167 ---------------------------------------SYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSR  207 (295)
T ss_pred             ---------------------------------------ccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHc
Confidence                                                   0001156788999998876 447999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccC---------------------C-CCh----hhhccChhhHHHHHHccCCCCCCCCCHHH
Q 002736          268 ---PFSTGEEKTRTMSSLRHR---------------------V-LPP----QLLLKFPKEASFCLWLLHPEPSGRPKMGE  318 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~---------------------~-~~~----~~~~~~~~~~~li~~~L~~dP~~Rps~~e  318 (886)
                         ||................                     . .+.    ......+.+.+||.+||.+||.+||++.|
T Consensus       208 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~e  287 (295)
T cd07837         208 KQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKA  287 (295)
T ss_pred             CCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHH
Confidence               665544333222211100                     0 000    01234567789999999999999999999


Q ss_pred             HhcCCCCC
Q 002736          319 LLQSEFLN  326 (886)
Q Consensus       319 il~h~~~~  326 (886)
                      ++.||||+
T Consensus       288 il~~~~~~  295 (295)
T cd07837         288 ALTHPYFD  295 (295)
T ss_pred             HhcCCCcC
Confidence            99999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.94  E-value=2.7e-26  Score=248.06  Aligned_cols=198  Identities=16%  Similarity=0.173  Sum_probs=148.0

Q ss_pred             ccccCCCCCCcccccc--ccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           36 DHLRNQGGLSGVCENE--AAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~--~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      +|++++..++ ++...  ...+.++++||| .|++|.+++..   ....+++..+..++.||+.||.|||++||+|||||
T Consensus        73 ~h~~i~~~~~-~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk  151 (286)
T cd06638          73 DHPNVVKFYG-MYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVK  151 (286)
T ss_pred             cCCCeeeeee-eeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence            6888888776 43221  234568999999 78999998742   23568899999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++........                                                    
T Consensus       152 p~nili~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------------  179 (286)
T cd06638         152 GNNILLTTEGGVKLVDFGVSAQLTSTRL----------------------------------------------------  179 (286)
T ss_pred             HHhEEECCCCCEEEccCCceeecccCCC----------------------------------------------------
Confidence            9999999999999999999854311100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-----CCCCcccccchHHHHHHH
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-----APVSCASDIYRLGVLLFE  264 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-----~~~s~~sDIwSlGvil~e  264 (886)
                                                            ......|++.|+|||.+..     ..++.++|||||||++||
T Consensus       180 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~e  221 (286)
T cd06638         180 --------------------------------------RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIE  221 (286)
T ss_pred             --------------------------------------ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHH
Confidence                                                  0011257889999999853     348899999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCCh--hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLPP--QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      |++   ||.......... .......+.  ........+.+|+.+||+.+|.+||++.|+++|+||
T Consensus       222 l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         222 LGDGDPPLADLHPMRALF-KIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             HhcCCCCCCCCchhHHHh-hccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence            998   665443322222 222211111  111234568899999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.94  E-value=1.5e-26  Score=242.87  Aligned_cols=187  Identities=16%  Similarity=0.120  Sum_probs=143.9

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      ..|++++..+. .+.   ..+.++++||| .|++|.+++.+. ..+++..+..++.||+.||+|||++||+||||||+||
T Consensus        42 ~~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Ni  116 (237)
T cd05576          42 HCVPNMVCLHK-YIV---SEDSVFLVLQHAEGGKLWSHISKF-LNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNI  116 (237)
T ss_pred             cCCCceeehhh-hee---cCCeEEEEEecCCCCCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHE
Confidence            45778777666 332   34678999999 789999999654 4689999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      +++.++.++++|||.+.......                                                         
T Consensus       117 l~~~~~~~~l~df~~~~~~~~~~---------------------------------------------------------  139 (237)
T cd05576         117 LLDDRGHIQLTYFSRWSEVEDSC---------------------------------------------------------  139 (237)
T ss_pred             EEcCCCCEEEecccchhcccccc---------------------------------------------------------
Confidence            99999999999999874331110                                                         


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                          ....++..|+|||.+.+..++.++||||+||++|||++   ||.
T Consensus       140 ------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~  183 (237)
T cd05576         140 ------------------------------------DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVE  183 (237)
T ss_pred             ------------------------------------ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhh
Confidence                                                00134667999999988889999999999999999998   332


Q ss_pred             CCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH-----HHHhcCCCC
Q 002736          271 TGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM-----GELLQSEFL  325 (886)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~-----~eil~h~~~  325 (886)
                      .....      ..............+.+.+++.+||+.||.+||++     +++++||||
T Consensus       184 ~~~~~------~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         184 CHPSG------INTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             cCchh------cccccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence            11110      00000011112345778899999999999999986     999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.94  E-value=1.9e-26  Score=252.99  Aligned_cols=198  Identities=16%  Similarity=0.121  Sum_probs=151.4

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|+|++.+++ .|..    +..++++|| .+++|.+++.+....+++..+..++.||+.||+|||++||+||||
T Consensus        61 ~~l~~l~h~niv~~~g-~~~~----~~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dl  135 (316)
T cd05108          61 YVMASVDNPHVCRLLG-ICLT----STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDL  135 (316)
T ss_pred             HHHHhCCCCCCCeEEE-EEcC----CCceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeecccc
Confidence            3455668999988776 6653    234556666 899999999776667899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.+||+|||+++.........                                                 
T Consensus       136 kp~Nill~~~~~~kl~DfG~a~~~~~~~~~~-------------------------------------------------  166 (316)
T cd05108         136 AARNVLVKTPQHVKITDFGLAKLLGADEKEY-------------------------------------------------  166 (316)
T ss_pred             chhheEecCCCcEEEccccccccccCCCcce-------------------------------------------------
Confidence            9999999999999999999996543221000                                                 


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       167 ---------------------------------------~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~  207 (316)
T cd05108         167 ---------------------------------------HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTF  207 (316)
T ss_pred             ---------------------------------------eccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcC
Confidence                                                   0000133567999999998889999999999999999985 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||... ........+.....++....+...+..++.+||..+|.+||++.+++.
T Consensus       208 g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~  263 (316)
T cd05108         208 GSKPYDGI-PASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELII  263 (316)
T ss_pred             CCCCCCCC-CHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence               55433 222333333333334444456678889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.94  E-value=1.4e-26  Score=251.59  Aligned_cols=204  Identities=18%  Similarity=0.282  Sum_probs=157.2

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .+++|..++..  ..+++..++.++.||+.||.|||++||+||||
T Consensus        70 ~~l~~l~hp~i~~~~~-~~~---~~~~~~iv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl  143 (297)
T cd06659          70 VIMRDYQHQNVVEMYK-SYL---VGEELWVLMEFLQGGALTDIVSQ--TRLNEEQIATVCESVLQALCYLHSQGVIHRDI  143 (297)
T ss_pred             HHHHhCCCCchhhhhh-hee---eCCeEEEEEecCCCCCHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            3455567888877666 333   34678889998 78899998744  45899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+||+|||++........                                                   
T Consensus       144 ~p~Nill~~~~~~kL~dfg~~~~~~~~~~---------------------------------------------------  172 (297)
T cd06659         144 KSDSILLTLDGRVKLSDFGFCAQISKDVP---------------------------------------------------  172 (297)
T ss_pred             CHHHeEEccCCcEEEeechhHhhcccccc---------------------------------------------------
Confidence            99999999999999999998853321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......|+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       173 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g  213 (297)
T cd06659         173 ---------------------------------------KRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDG  213 (297)
T ss_pred             ---------------------------------------cccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhC
Confidence                                                   0011367889999999988889999999999999999998 


Q ss_pred             --CCCCCchhhHHhHhhccCCC--ChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVL--PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                        ||...... ..+..+.....  ........+.+.+++.+||..+|.+||++.++++||||.....
T Consensus       214 ~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~~  279 (297)
T cd06659         214 EPPYFSDSPV-QAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQTGL  279 (297)
T ss_pred             CCCCCCCCHH-HHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhccCCC
Confidence              77544332 23333332211  1122234567789999999999999999999999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.94  E-value=3.7e-26  Score=245.06  Aligned_cols=202  Identities=20%  Similarity=0.262  Sum_probs=153.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.   ..+.++++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++|++|+|||
T Consensus        61 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~  135 (272)
T cd06629          61 TLKDLDHLNIVQYLG-FET---TEEYLSIFLEYVPGGSIGSCLRTY-GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLK  135 (272)
T ss_pred             HHHhcCCCCcceEEE-Eec---cCCceEEEEecCCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCC
Confidence            445567888887766 444   34678889999 899999999665 578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++.........                                                   
T Consensus       136 ~~nil~~~~~~~~l~d~~~~~~~~~~~~~---------------------------------------------------  164 (272)
T cd06629         136 ADNLLVDADGICKISDFGISKKSDDIYDN---------------------------------------------------  164 (272)
T ss_pred             hhhEEEcCCCeEEEeeccccccccccccc---------------------------------------------------
Confidence            99999999999999999998533111000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC--CCcccccchHHHHHHHHhc
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP--VSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~--~s~~sDIwSlGvil~eLl~  267 (886)
                                                           .......|+..|+|||.+....  ++.++|+|||||++|||++
T Consensus       165 -------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~  207 (272)
T cd06629         165 -------------------------------------DQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFA  207 (272)
T ss_pred             -------------------------------------cccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHh
Confidence                                                 0001125788899999987654  8999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccC---CCCh-hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHR---VLPP-QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||................   ..++ .....+..+.+++.+||.++|.+||++.++++|||+
T Consensus       208 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         208 GRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             CCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence               665443332222221111   1111 122345678899999999999999999999999996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.94  E-value=1.8e-26  Score=251.85  Aligned_cols=198  Identities=16%  Similarity=0.143  Sum_probs=145.8

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC------------------CCcChHHHHHHHHHH
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK------------------RSVDVYECLHIFRQI   91 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~------------------~~l~~~~~~~i~~qi   91 (886)
                      .+....|++++.+++ ++.+   .+.++++||| .+++|.++|....                  ..+++.++..|+.||
T Consensus        72 ~l~~l~h~niv~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i  147 (304)
T cd05096          72 ILSRLKDPNIIRLLG-VCVD---EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQI  147 (304)
T ss_pred             HHhhcCCCCeeEEEE-EEec---CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHH
Confidence            344557888888776 5543   3568999999 7899999984321                  246778899999999


Q ss_pred             HHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhccccccc
Q 002736           92 VEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDL  171 (886)
Q Consensus        92 ~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (886)
                      +.||.|||++||+||||||+|||++.++.+||+|||+++........                                 
T Consensus       148 ~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~---------------------------------  194 (304)
T cd05096         148 ASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYY---------------------------------  194 (304)
T ss_pred             HHHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecccCcee---------------------------------
Confidence            99999999999999999999999999999999999998543111000                                 


Q ss_pred             ccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCc
Q 002736          172 QLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSC  251 (886)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~  251 (886)
                                                                             .......++..|+|||++.+..++.
T Consensus       195 -------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~  219 (304)
T cd05096         195 -------------------------------------------------------RIQGRAVLPIRWMAWECILMGKFTT  219 (304)
T ss_pred             -------------------------------------------------------EecCcCCCCccccCHHHHhcCCCCc
Confidence                                                                   0000124567899999998888999


Q ss_pred             ccccchHHHHHHHHhc-----CCCCCchhhHHhHhh----cc---CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHH
Q 002736          252 ASDIYRLGVLLFELFC-----PFSTGEEKTRTMSSL----RH---RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGEL  319 (886)
Q Consensus       252 ~sDIwSlGvil~eLl~-----pf~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ei  319 (886)
                      ++|||||||++|||++     ||....... .+...    ..   ...+.....+++.+.+|+.+||..+|.+|||+.++
T Consensus       220 ~~Dv~slG~~l~el~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i  298 (304)
T cd05096         220 ASDVWAFGVTLWEILMLCKEQPYGELTDEQ-VIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDI  298 (304)
T ss_pred             hhhhHHHHHHHHHHHHccCCCCCCcCCHHH-HHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHH
Confidence            9999999999999985     554433222 11111    11   11122223455678899999999999999999998


Q ss_pred             hc
Q 002736          320 LQ  321 (886)
Q Consensus       320 l~  321 (886)
                      .+
T Consensus       299 ~~  300 (304)
T cd05096         299 HA  300 (304)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.94  E-value=3.1e-26  Score=246.65  Aligned_cols=198  Identities=15%  Similarity=0.106  Sum_probs=150.3

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+.+.+|++++..++ +|..    ..+++++|| .+++|.+++......+++..++.++.||+.||.|||++||+||||
T Consensus        61 ~~l~~l~h~~iv~~~~-~~~~----~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dl  135 (279)
T cd05111          61 LAMGSLDHAYIVRLLG-ICPG----ASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNL  135 (279)
T ss_pred             HHHhcCCCCCcceEEE-EECC----CccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecccc
Confidence            3456778999988777 5432    334556666 889999999765567899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||+++........                                                  
T Consensus       136 kp~nili~~~~~~kl~Dfg~~~~~~~~~~~--------------------------------------------------  165 (279)
T cd05111         136 AARNILLKSDSIVQIADFGVADLLYPDDKK--------------------------------------------------  165 (279)
T ss_pred             CcceEEEcCCCcEEEcCCccceeccCCCcc--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            .......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       166 --------------------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~  207 (279)
T cd05111         166 --------------------------------------YFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSY  207 (279)
T ss_pred             --------------------------------------cccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcC
Confidence                                                  00011245678999999988889999999999999999996 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||..... ......+.....++....+......++.+||..+|.+||++.|+++
T Consensus       208 g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         208 GAEPYAGMRP-HEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             CCCCCCCCCH-HHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence               6644332 2223333333333333345567789999999999999999999865

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.93  E-value=1.3e-26  Score=246.50  Aligned_cols=199  Identities=17%  Similarity=0.145  Sum_probs=156.5

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+.+.+|++++..+. .+.   ..+.+++++|| .|++|.+++.+. ..+++.++..++.||++||.|||++||+|+||
T Consensus        52 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl  126 (258)
T cd05578          52 RILQELNHPFLVNLWY-SFQ---DEENMYLVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLHSKGIIHRDI  126 (258)
T ss_pred             HHHHhCCCCChHHHHH-hhc---CCCeEEEEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCC
Confidence            4556678898888666 332   34678889998 899999999665 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++........                                                   
T Consensus       127 ~~~nil~~~~~~~~l~d~~~~~~~~~~~~---------------------------------------------------  155 (258)
T cd05578         127 KPDNILLDEQGHVHITDFNIATKVTPDTL---------------------------------------------------  155 (258)
T ss_pred             CHHHeEEcCCCCEEEeecccccccCCCcc---------------------------------------------------
Confidence            99999999999999999998854321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                              .....|+..|+|||.+.+..++.++|+|||||++|+|++ 
T Consensus       156 ----------------------------------------~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g  195 (258)
T cd05578         156 ----------------------------------------TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRG  195 (258)
T ss_pred             ----------------------------------------ccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhC
Confidence                                                    001256788999999988889999999999999999998 


Q ss_pred             --CCCCCch--hhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH--HHHhcCCCC
Q 002736          268 --PFSTGEE--KTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM--GELLQSEFL  325 (886)
Q Consensus       268 --pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~--~eil~h~~~  325 (886)
                        ||.....  .......... ..+..+...++.+.+++.+||..||.+||++  .|+++||||
T Consensus       196 ~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         196 KRPYRGHSRTIRDQIRAKQET-ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             CCCCCCCCccHHHHHHHHhcc-ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence              7755443  2222222221 2223333455788899999999999999999  999999997

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.93  E-value=2.7e-26  Score=243.99  Aligned_cols=198  Identities=13%  Similarity=0.115  Sum_probs=152.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+....|++++..++ +|.    .+.++++||| .+++|.+++.+. ..+++..+..++.||+.||.|||++||+||||
T Consensus        48 ~~l~~l~h~~i~~~~~-~~~----~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl  121 (257)
T cd05116          48 NVMQQLDNPYIVRMIG-ICE----AESWMLVMELAELGPLNKFLQKN-KHVTEKNITELVHQVSMGMKYLEETNFVHRDL  121 (257)
T ss_pred             HHHHhCCCCCcceEEE-EEc----CCCcEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCEeeccc
Confidence            3455568888888776 553    3457889999 778999999654 56899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++..........                                                 
T Consensus       122 kp~nill~~~~~~kl~Dfg~~~~~~~~~~~~-------------------------------------------------  152 (257)
T cd05116         122 AARNVLLVTQHYAKISDFGLSKALGADENYY-------------------------------------------------  152 (257)
T ss_pred             chhhEEEcCCCeEEECCCccccccCCCCCee-------------------------------------------------
Confidence            9999999999999999999986542221000                                                 


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            .......++..|+|||.+....++.++|||||||++|||++ 
T Consensus       153 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~  194 (257)
T cd05116         153 --------------------------------------KAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSY  194 (257)
T ss_pred             --------------------------------------eecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhC
Confidence                                                  00001134567999999988889999999999999999986 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||..... ......+.....++.+...++++.++|.+||+.||.+||++.+|.+
T Consensus       195 g~~p~~~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         195 GQKPYKGMKG-NEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             CCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHH
Confidence               6644433 3344444444444445567788999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.93  E-value=3.5e-27  Score=264.33  Aligned_cols=202  Identities=17%  Similarity=0.247  Sum_probs=155.6

Q ss_pred             cccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCC--c-ChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           33 THGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRS--V-DVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~--l-~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+-+|+|+|++||    .|......||..|.|.-+|.++++.....  . ...+.+.++.|++.||.+||+.+|||||||
T Consensus       558 eSD~H~NviRyyc----~E~d~qF~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLk  633 (903)
T KOG1027|consen  558 ESDEHPNVIRYYC----SEQDRQFLYIALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLK  633 (903)
T ss_pred             hccCCCceEEEEe----eccCCceEEEEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCC
Confidence            3459999999999    67777889999999999999999763111  1 125668899999999999999999999999


Q ss_pred             Ccceeecc---C--CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          110 PSCFVMSS---F--NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       110 P~NIll~~---~--~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      |.||||+.   +  ..++|.|||+|+....+..                                               
T Consensus       634 PQNILI~~~~~~~~~ra~iSDfglsKkl~~~~s-----------------------------------------------  666 (903)
T KOG1027|consen  634 PQNILISVPSADGTLRAKISDFGLSKKLAGGKS-----------------------------------------------  666 (903)
T ss_pred             CceEEEEccCCCcceeEEecccccccccCCCcc-----------------------------------------------
Confidence            99999975   2  3589999999987643310                                               


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHH
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~e  264 (886)
                                                             .++ +.....||..|+|||++....-+.++||+||||++|+
T Consensus       667 ---------------------------------------S~~-r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyY  706 (903)
T KOG1027|consen  667 ---------------------------------------SFS-RLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYY  706 (903)
T ss_pred             ---------------------------------------hhh-cccCCCCcccccCHHHHhccccCcccchhhcCceEEE
Confidence                                                   000 1122378999999999999888889999999999999


Q ss_pred             Hhc----CCCCCchhhHHhHhhccCCCChhhhccCh--hhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          265 LFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFP--KEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       265 Ll~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                      .++    ||.....+...+   ......-......+  ++.+||.+|++++|..||+|.++|.||||...
T Consensus       707 vltgG~HpFGd~~~R~~NI---l~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~~  773 (903)
T KOG1027|consen  707 VLTGGSHPFGDSLERQANI---LTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRPSATDVLNHPLFWDS  773 (903)
T ss_pred             EecCCccCCCchHHhhhhh---hcCccceeeeccCchHHHHHHHHHhcCCCcccCCCHHHHhCCCccCCh
Confidence            998    886554443322   22211111111122  77899999999999999999999999999864

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.93  E-value=3e-26  Score=243.31  Aligned_cols=201  Identities=17%  Similarity=0.234  Sum_probs=157.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .+++|.+++... ...+++..++.++.||+.||.|||++||+|+|
T Consensus        51 ~~l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~  126 (256)
T cd08218          51 AVLSNMKHPNIVQYQE-SFE---ENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRD  126 (256)
T ss_pred             HHHHhCCCCCeeeeEe-eec---CCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCC
Confidence            3455567888877666 332   34678899998 788999998543 34679999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |+|+||+++.++.++++|||.+........                                                  
T Consensus       127 l~~~nil~~~~~~~~l~d~~~~~~~~~~~~--------------------------------------------------  156 (256)
T cd08218         127 IKSQNIFLTKDGTIKLGDFGIARVLNSTVE--------------------------------------------------  156 (256)
T ss_pred             CCHHHEEEcCCCCEEEeeccceeecCcchh--------------------------------------------------
Confidence            999999999999999999998854321100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......|++.|+|||.+.+..++.++|+|||||++|+|++
T Consensus       157 ----------------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~  196 (256)
T cd08218         157 ----------------------------------------LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCT  196 (256)
T ss_pred             ----------------------------------------hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHc
Confidence                                                    0001256788999999988889999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||............+ ....++........+.++|.+||+.+|.+||++.++++||||
T Consensus       197 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         197 LKHAFEAGNMKNLVLKII-RGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             CCCCccCCCHHHHHHHHh-cCCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence               676555444443333 333444444566788999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.93  E-value=3.3e-26  Score=243.12  Aligned_cols=197  Identities=17%  Similarity=0.205  Sum_probs=150.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.+   .+.++++||| .|++|.+++......+++..++.++.||+.||.|||++||+|||||
T Consensus        52 ~l~~l~h~~i~~~~~-~~~~---~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  127 (256)
T cd05114          52 VMMKLSHPKLVQLYG-VCTQ---QKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLA  127 (256)
T ss_pred             HHHHCCCCCceeEEE-EEcc---CCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccC
Confidence            444567888888776 4443   4678999999 7899999996554578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||.++........                                                   
T Consensus       128 p~ni~i~~~~~~kl~d~g~~~~~~~~~~~---------------------------------------------------  156 (256)
T cd05114         128 ARNCLVSSTGVVKVSDFGMTRYVLDDEYT---------------------------------------------------  156 (256)
T ss_pred             cceEEEcCCCeEEECCCCCccccCCCcee---------------------------------------------------
Confidence            99999999999999999988543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       157 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g  198 (256)
T cd05114         157 --------------------------------------SSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEG  198 (256)
T ss_pred             --------------------------------------ccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCC
Confidence                                                  0000133557999999988889999999999999999997  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||...... .....+.....+.......+.+.+++.+||..+|.+||++.++++
T Consensus       199 ~~p~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         199 KMPFEKKSNY-EVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             CCCCCCCCHH-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence              66444333 333333333232223334567889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.93  E-value=2.6e-26  Score=244.00  Aligned_cols=198  Identities=16%  Similarity=0.207  Sum_probs=151.0

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ +|.   ..+.++++||| .+++|.+++.+....+++..++.++.||+.||.|||+.||+|+|||
T Consensus        52 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  127 (256)
T cd05113          52 VMMKLSHEKLVQLYG-VCT---KQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLA  127 (256)
T ss_pred             HHhcCCCCCeeeEEE-EEc---cCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC
Confidence            344557888888776 543   34568999999 7889999997655578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||.++........                                                   
T Consensus       128 p~nili~~~~~~kl~d~g~~~~~~~~~~~---------------------------------------------------  156 (256)
T cd05113         128 ARNCLVDDQGCVKVSDFGLSRYVLDDEYT---------------------------------------------------  156 (256)
T ss_pred             cceEEEcCCCCEEECCCccceecCCCcee---------------------------------------------------
Confidence            99999999999999999988543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       157 --------------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g  198 (256)
T cd05113         157 --------------------------------------SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLG  198 (256)
T ss_pred             --------------------------------------ecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCC
Confidence                                                  0000134667999999988889999999999999999996  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                        ||...... .....+.....+......++.+.+++.+||+.+|.+||++.+++.+
T Consensus       199 ~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         199 KMPYERFNNS-ETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             CCCcCcCCHH-HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence              66444332 2233333333333333345778899999999999999999999863

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.6e-25  Score=234.13  Aligned_cols=284  Identities=17%  Similarity=0.260  Sum_probs=216.6

Q ss_pred             cccccccccccceEEeeecCceEEE-EeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCc-ccccccc
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKA-DLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINE-NRDIHYP  610 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~-~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~-~~~~~~~  610 (886)
                      ...+++|.+|-.+++|||......- .++ .-..-....|.++.|++.|..|++.+....++|+|-+..... .....+.
T Consensus       179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr-~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY  257 (641)
T KOG0772|consen  179 GARFVSGSLDYTVKFWDFQGMDASMRSFR-QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY  257 (641)
T ss_pred             CceeeeccccceEEEEecccccccchhhh-ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchh
Confidence            4568999999999999997653321 111 111234668999999999999999999999999997652111 1111111


Q ss_pred             ----eEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCce-EEEEec-----ccCCcEEEEEEccCCCCEEEEEe
Q 002736          611 ----VVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ-VLTEMR-----EHERRVWSIDFSSADPTLLASGS  680 (886)
Q Consensus       611 ----~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~-~~~~~~-----~h~~~v~~v~~~p~~~~~l~sgs  680 (886)
                          ...-+|...++|.+|+|.+.+.++|+++||+++|||+...+ ....++     +..-+++++.|+| ++.++|+|+
T Consensus       258 I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc  336 (641)
T KOG0772|consen  258 IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGC  336 (641)
T ss_pred             hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccchhhhcc
Confidence                22336888999999999999999999999999999997653 223332     3445789999998 999999999


Q ss_pred             CCCcEEEEeCchhhhhhccCceeeee--ec--CCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCC--C
Q 002736          681 DDGSVKLWSINQAILLLHLGVSIGTI--KT--KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHN--K  754 (886)
Q Consensus       681 ~Dg~v~lwd~~~~~~~~~~~~~~~~~--~~--~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~--~  754 (886)
                      .||+|.+|+......     .+...+  .|  ...|+||.|+++ |++|++-+.|+++++||+|+.+.|+.+..+-.  .
T Consensus       337 ~DGSIQ~W~~~~~~v-----~p~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~  410 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTV-----RPVMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF  410 (641)
T ss_pred             cCCceeeeecCCccc-----ccceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeeccccccchhhhcCCCccC
Confidence            999999999865321     111111  12  247999999999 99999999999999999999998888876533  4


Q ss_pred             CeEEEEec-CCCEEEEEEC------CCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEE
Q 002736          755 TVSYVKFV-DATTLVSAST------DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVY  827 (886)
Q Consensus       755 ~V~~v~f~-~~~~l~sgs~------Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iw  827 (886)
                      +-+.++|+ +.++|+||+.      .|++.+||..+.      ..+..+.-.+..|..+.|+|.=+.|..|+.||+++||
T Consensus       411 ~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~------d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  411 PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL------DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             CCCccccCCCceEEEecccccCCCCCceEEEEeccce------eeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            56788997 8888888763      578999998876      3466666667778889999998888899999999998


Q ss_pred             ecC
Q 002736          828 HKA  830 (886)
Q Consensus       828 d~~  830 (886)
                      .-.
T Consensus       485 Ydp  487 (641)
T KOG0772|consen  485 YDP  487 (641)
T ss_pred             ECc
Confidence            644

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-25  Score=215.88  Aligned_cols=256  Identities=20%  Similarity=0.268  Sum_probs=200.1

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEE-eCCCCCeEEEecCCCcEE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICW-NSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~-~~~~~~~las~s~Dg~V~  643 (886)
                      ..|.+.|-++..+-.|..||||+.|++||||.......    ........+|.++|..++| +|.-+++|||++|||.|.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            35888899999999999999999999999999875321    1122334579999999999 566799999999999999


Q ss_pred             EEECCCce--EEEEecccCCcEEEEEEccCC-CCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCC
Q 002736          644 VWDVSRSQ--VLTEMREHERRVWSIDFSSAD-PTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLD  720 (886)
Q Consensus       644 iWd~~t~~--~~~~~~~h~~~v~~v~~~p~~-~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  720 (886)
                      ||.-+.++  ...++..|...|++|+|.|.+ +-+|++++.||.|.|.+.+....-   ....-..-|.-.|++|+|.|.
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w---~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW---TTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc---cchhhhhccccccceeeecCc
Confidence            99988774  345566799999999999843 568899999999999999874110   011112235667999999986


Q ss_pred             C--C-----------cEEEEEeCCCeEEEEecCCCCcc-eEEEecCCCCeEEEEec-----CCCEEEEEECCCcEEEEeC
Q 002736          721 S--G-----------RSLAFGSADHRIYYYDLRNSKIP-LCTLIGHNKTVSYVKFV-----DATTLVSASTDNTLKLWDL  781 (886)
Q Consensus       721 ~--~-----------~~l~~gs~Dg~I~vwDlr~~~~~-~~~~~~h~~~V~~v~f~-----~~~~l~sgs~Dg~i~lwd~  781 (886)
                      .  |           +.|++|+.|+.|++|+..+..-. -.++.+|.+.|..|+|.     ...+|||+|.||++.||-.
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence            2  1           45999999999999999886432 34589999999999994     4468999999999999988


Q ss_pred             CCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecC
Q 002736          782 SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       782 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~  830 (886)
                      +.....-...+   +......++.+.||+.|..||.++.|+.|.+|.-.
T Consensus       241 ~~e~e~wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  241 DEEYEPWKKTL---LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cCccCcccccc---cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            74322111122   33355789999999999999999999999999644

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.93  E-value=3.8e-26  Score=249.41  Aligned_cols=218  Identities=16%  Similarity=0.170  Sum_probs=157.1

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+.   ..+.++++||| .|++|.++|... +.+++..+..++.||+.||.|||++||+|||||
T Consensus        54 ~l~~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~  128 (305)
T cd05609          54 ILTFAENPFVVSMFC-SFE---TKRHLCMVMEYVEGGDCATLLKNI-GALPVDMARMYFAETVLALEYLHNYGIVHRDLK  128 (305)
T ss_pred             HHHhCCCCCeeeeEE-EEe---cCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc
Confidence            344567888887765 332   34678999999 789999999654 578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++..+.+|++|||+++........... ..                                       .  .  
T Consensus       129 p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~-~~---------------------------------------~--~--  164 (305)
T cd05609         129 PDNLLITSMGHIKLTDFGLSKIGLMSLTTNLY-EG---------------------------------------H--I--  164 (305)
T ss_pred             hHHEEECCCCCEEEeeCCCccccCcCcccccc-cc---------------------------------------c--c--
Confidence            99999999999999999988532111000000 00                                       0  0  


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                     .............|+..|+|||.+.+..++.++|||||||++|||++  
T Consensus       165 -------------------------------~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~  213 (305)
T cd05609         165 -------------------------------EKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGC  213 (305)
T ss_pred             -------------------------------ccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCC
Confidence                                           00000000011357888999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccC-C-CChhhhccChhhHHHHHHccCCCCCCCCC---HHHHhcCCCCCCCc
Q 002736          268 -PFSTGEEKTRTMSSLRHR-V-LPPQLLLKFPKEASFCLWLLHPEPSGRPK---MGELLQSEFLNEPR  329 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps---~~eil~h~~~~~~~  329 (886)
                       ||...... ......... . .+......++.+.+++.+||+.+|.+||+   +.++|+||||....
T Consensus       214 ~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~  280 (305)
T cd05609         214 VPFFGDTPE-ELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLD  280 (305)
T ss_pred             CCCCCCCHH-HHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhCccccCCC
Confidence             77654333 223332222 1 22222235567889999999999999998   78999999997643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.93  E-value=2.2e-26  Score=249.41  Aligned_cols=199  Identities=19%  Similarity=0.202  Sum_probs=152.1

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------CCCcChHHHHHHHHHHHH
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYECLHIFRQIVE   93 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------~~~l~~~~~~~i~~qi~~   93 (886)
                      ..+...+|++++..++ ++.   ..+.++++||| .+++|.+++...               ...+++..++.++.||+.
T Consensus        59 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~  134 (291)
T cd05094          59 ELLTNLQHEHIVKFYG-VCG---DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIAS  134 (291)
T ss_pred             HHHhcCCCCCcceEEE-EEc---cCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHH
Confidence            3455567888888666 444   34678999999 789999999542               134789999999999999


Q ss_pred             HHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhccccccccc
Q 002736           94 IVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQL  173 (886)
Q Consensus        94 ~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  173 (886)
                      ||.|||++||+||||||+||+++.++.++++|||++..........                                  
T Consensus       135 al~~lH~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~----------------------------------  180 (291)
T cd05094         135 GMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYR----------------------------------  180 (291)
T ss_pred             HHHHHHhCCeeecccCcceEEEccCCcEEECCCCcccccCCCceee----------------------------------
Confidence            9999999999999999999999999999999999985432210000                                  


Q ss_pred             ccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCccc
Q 002736          174 VTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS  253 (886)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~s  253 (886)
                                                                            ......++..|+|||.+.+..++.++
T Consensus       181 ------------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~  206 (291)
T cd05094         181 ------------------------------------------------------VGGHTMLPIRWMPPESIMYRKFTTES  206 (291)
T ss_pred             ------------------------------------------------------cCCCCCcceeecChHHhccCCCCchh
Confidence                                                                  00012567789999999988899999


Q ss_pred             ccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          254 DIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       254 DIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |||||||++|||++    ||...... .....+.....+......+..+.+++.+||..+|.+||++.++++
T Consensus       207 Di~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         207 DVWSFGVILWEIFTYGKQPWFQLSNT-EVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence            99999999999997    66444333 233334444333333345667889999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=2.6e-26  Score=244.85  Aligned_cols=191  Identities=13%  Similarity=0.121  Sum_probs=142.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ +|..   ....+++||| .+++|..++.+....+++..++.++.||+.||.|||++||+|||||
T Consensus        57 ~l~~l~hp~iv~~~~-~~~~---~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk  132 (262)
T cd05077          57 MMRQVSHKHIVLLYG-VCVR---DVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVC  132 (262)
T ss_pred             HHHhCCCCCEeeEEE-EEec---CCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCC
Confidence            445568999988777 5543   3567889999 7788988886655678999999999999999999999999999999


Q ss_pred             CcceeeccCCc-------eeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          110 PSCFVMSSFNH-------VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       110 P~NIll~~~~~-------vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |+|||++.++.       ++++|||++......                                               
T Consensus       133 p~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~-----------------------------------------------  165 (262)
T cd05077         133 TKNILLAREGIDGECGPFIKLSDPGIPITVLSR-----------------------------------------------  165 (262)
T ss_pred             cccEEEecCCccCCCCceeEeCCCCCCccccCc-----------------------------------------------
Confidence            99999987664       899999987432110                                               


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC-CCCCCcccccchHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-GAPVSCASDIYRLGVL  261 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-~~~~s~~sDIwSlGvi  261 (886)
                                                                     ....++..|+|||.+. +..++.++|||||||+
T Consensus       166 -----------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~  198 (262)
T cd05077         166 -----------------------------------------------QECVERIPWIAPECVEDSKNLSIAADKWSFGTT  198 (262)
T ss_pred             -----------------------------------------------ccccccccccChhhhcCCCCCCchhHHHHHHHH
Confidence                                                           0125677899999987 4568999999999999


Q ss_pred             HHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       262 l~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      +|||++    ||..... ... ........ .......+.+.+|+.+||+.||.+||++.+++++
T Consensus       199 l~el~~~~~~p~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         199 LWEICYNGEIPLKDKTL-AEK-ERFYEGQC-MLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             HHHHHhCCCCCCCCcch-hHH-HHHHhcCc-cCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence            999984    5533221 111 11111111 1111223567899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.93  E-value=4.9e-26  Score=242.11  Aligned_cols=197  Identities=20%  Similarity=0.242  Sum_probs=154.5

Q ss_pred             cccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC--------CCCcChHHHHHHHHHHHHHHHhhcccCe
Q 002736           33 THGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP--------KRSVDVYECLHIFRQIVEIVYAAHSQGI  103 (886)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~--------~~~l~~~~~~~i~~qi~~~l~~lHs~gi  103 (886)
                      ....|++++..++ ++.+   ...++++||| .|++|.+++...        ...+++.++..++.||+.||.|||++||
T Consensus        51 ~~~~~~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i  126 (262)
T cd00192          51 KKLGHPNVVRLLG-VCTE---EEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKF  126 (262)
T ss_pred             hhcCCCChheeee-eecC---CCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3345888888766 4443   5678999999 599999999765        4678999999999999999999999999


Q ss_pred             eecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccc
Q 002736          104 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSE  183 (886)
Q Consensus       104 iHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  183 (886)
                      +|+||||+||+++.++.+|++|||.+.........                                             
T Consensus       127 ~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~---------------------------------------------  161 (262)
T cd00192         127 VHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYY---------------------------------------------  161 (262)
T ss_pred             ccCccCcceEEECCCCcEEEccccccccccccccc---------------------------------------------
Confidence            99999999999999999999999998654322100                                             


Q ss_pred             ccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHH
Q 002736          184 ASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLF  263 (886)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~  263 (886)
                                                                 .......++..|+|||.+.+..++.++|||||||++|
T Consensus       162 -------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  198 (262)
T cd00192         162 -------------------------------------------RKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLW  198 (262)
T ss_pred             -------------------------------------------ccccCCCcCccccCHHHhccCCcchhhccHHHHHHHH
Confidence                                                       0000124577899999998888999999999999999


Q ss_pred             HHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          264 ELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       264 eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      ||++    ||.... .......+......+.....++.+.+++.+||..+|.+||++.|++++
T Consensus       199 ~l~~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         199 EIFTLGATPYPGLS-NEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             HHHhcCCCCCCCCC-HHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            9997    564443 333334444344444445567889999999999999999999999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=3.6e-26  Score=243.21  Aligned_cols=190  Identities=17%  Similarity=0.214  Sum_probs=142.7

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +....|++++..++ ++..   .+..+++||| .+++|.++|.+....+++..++.++.||+.||.|||++||+||||||
T Consensus        53 l~~~~h~~iv~~~~-~~~~---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp  128 (258)
T cd05078          53 MSQLSHKHLVLNYG-VCVC---GDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCA  128 (258)
T ss_pred             HHhCCCCChhheee-EEEe---CCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCcc
Confidence            44567888888777 4432   3567788998 78899999977656789999999999999999999999999999999


Q ss_pred             cceeeccCCc--------eeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          111 SCFVMSSFNH--------VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       111 ~NIll~~~~~--------vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      +||+++.++.        ++++|||++......                                               
T Consensus       129 ~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~-----------------------------------------------  161 (258)
T cd05078         129 KNVLLIREEDRKTGNPPFIKLSDPGISITVLPK-----------------------------------------------  161 (258)
T ss_pred             ceEEEecccccccCCCceEEecccccccccCCc-----------------------------------------------
Confidence            9999987765        577888776322100                                               


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVL  261 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvi  261 (886)
                                                                     ....++..|+|||.+.+. .++.++|||||||+
T Consensus       162 -----------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~  194 (258)
T cd05078         162 -----------------------------------------------EILLERIPWVPPECIENPQNLSLAADKWSFGTT  194 (258)
T ss_pred             -----------------------------------------------hhccccCCccCchhccCCCCCCchhhHHHHHHH
Confidence                                                           012567789999999874 48999999999999


Q ss_pred             HHHHhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       262 l~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +|||++   +++...............  ...+...++++.+++.+||+.+|.+|||++++++
T Consensus       195 l~~l~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  255 (258)
T cd05078         195 LWEIFSGGDKPLSALDSQKKLQFYEDR--HQLPAPKWTELANLINQCMDYEPDFRPSFRAIIR  255 (258)
T ss_pred             HHHHHcCCCCChhhccHHHHHHHHHcc--ccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            999998   332332222222222211  1122234467889999999999999999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-26  Score=232.48  Aligned_cols=204  Identities=17%  Similarity=0.256  Sum_probs=156.2

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      .|||-.+|+-.  |.  ..+..++.+.|| .||+|.-.+.+ +++++++.++.|...|+.||+|||++|||.||||..|+
T Consensus       308 sn~pflvglhs--cf--qtesrlffvieyv~ggdlmfhmqr-qrklpeeharfys~ei~lal~flh~rgiiyrdlkldnv  382 (593)
T KOG0695|consen  308 SNNPFLVGLHS--CF--QTESRLFFVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNV  382 (593)
T ss_pred             cCCCeEEehhh--hh--cccceEEEEEEEecCcceeeehhh-hhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccce
Confidence            67887777665  32  234455666677 99999887844 48999999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      ||+..|++|++|+|.|+.--.+..                                                        
T Consensus       383 lldaeghikltdygmcke~l~~gd--------------------------------------------------------  406 (593)
T KOG0695|consen  383 LLDAEGHIKLTDYGMCKEGLGPGD--------------------------------------------------------  406 (593)
T ss_pred             EEccCCceeecccchhhcCCCCCc--------------------------------------------------------
Confidence            999999999999999964211100                                                        


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS  270 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~  270 (886)
                                                        .+.+++|||.|.|||++.|..|++++|+|+|||++|||+.   ||.
T Consensus       407 ----------------------------------~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfd  452 (593)
T KOG0695|consen  407 ----------------------------------TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFD  452 (593)
T ss_pred             ----------------------------------ccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcc
Confidence                                              1234599999999999999999999999999999999998   873


Q ss_pred             C------CchhhHHh-H-hhccCCCChhhhccChhhHHHHHHccCCCCCCCCC------HHHHhcCCCCCCCcCchHHH
Q 002736          271 T------GEEKTRTM-S-SLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK------MGELLQSEFLNEPRDSMEER  335 (886)
Q Consensus       271 ~------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps------~~eil~h~~~~~~~~~~~e~  335 (886)
                      -      .+...... . .+...+..  +...+-++..+++..|++||.+|..      +.++..|+||......+.++
T Consensus       453 ivgm~n~d~ntedylfqvilekqiri--prslsvkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~idwd~leq  529 (593)
T KOG0695|consen  453 IVGMDNPDMNTEDYLFQVILEKQIRI--PRSLSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQ  529 (593)
T ss_pred             eecCCCcccchhHHHHHHHhhhcccc--cceeehhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHhh
Confidence            1      12222222 2 22222222  2344567789999999999999954      68899999999766554443

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.4e-26  Score=244.28  Aligned_cols=197  Identities=18%  Similarity=0.206  Sum_probs=151.1

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.   ..+.++++||| .|++|.+++.+....+++..++.++.||+.||.|||++||+|||||
T Consensus        52 ~l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~  127 (256)
T cd05059          52 VMMKLSHPNLVQLYG-VCT---KQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLA  127 (256)
T ss_pred             HHHhCCCCCEEEEEE-EEc---CCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCccccccc
Confidence            444567888887666 333   34578899999 7899999997655578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||+++........                                                   
T Consensus       128 p~ni~i~~~~~~kl~dfg~~~~~~~~~~~---------------------------------------------------  156 (256)
T cd05059         128 ARNCLVGEDNVVKVSDFGLARYVLDDQYT---------------------------------------------------  156 (256)
T ss_pred             HhhEEECCCCcEEECCcccceeccccccc---------------------------------------------------
Confidence            99999999999999999988543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       157 --------------------------------------~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g  198 (256)
T cd05059         157 --------------------------------------SSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEG  198 (256)
T ss_pred             --------------------------------------ccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccC
Confidence                                                  0000022456999999998889999999999999999997  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||..... ......+.....++.+...++.+.+++.+||..+|++||++.|+++
T Consensus       199 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~  253 (256)
T cd05059         199 KMPYERFSN-SEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLS  253 (256)
T ss_pred             CCCCCCCCH-HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence              5644333 3333344433333334456778889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.93  E-value=3.5e-26  Score=247.50  Aligned_cols=199  Identities=19%  Similarity=0.176  Sum_probs=151.3

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC------------CCcChHHHHHHHHHHHHHHH
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK------------RSVDVYECLHIFRQIVEIVY   96 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~------------~~l~~~~~~~i~~qi~~~l~   96 (886)
                      ..+....|++++..++ +|.   ..+.++++||| .+++|.++|....            ..+++..++.++.||+.||+
T Consensus        59 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~  134 (288)
T cd05093          59 ELLTNLQHEHIVKFYG-VCV---EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMV  134 (288)
T ss_pred             HHHHhCCCCCcceEEE-EEe---cCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            3445567888888776 444   34678899999 7899999985321            24899999999999999999


Q ss_pred             hhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccC
Q 002736           97 AAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTA  176 (886)
Q Consensus        97 ~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  176 (886)
                      |||++||+||||||+||+++.++.+|++|||++.........                                      
T Consensus       135 ~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~--------------------------------------  176 (288)
T cd05093         135 YLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYY--------------------------------------  176 (288)
T ss_pred             HHHhCCeeecccCcceEEEccCCcEEeccCCccccccCCcee--------------------------------------
Confidence            999999999999999999999999999999998543211000                                      


Q ss_pred             CCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccc
Q 002736          177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIY  256 (886)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIw  256 (886)
                                                                        .......++..|+|||.+.+..++.++|||
T Consensus       177 --------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDiw  206 (288)
T cd05093         177 --------------------------------------------------RVGGHTMLPIRWMPPESIMYRKFTTESDVW  206 (288)
T ss_pred             --------------------------------------------------ecCCCCCccccccCHHHhccCCCCchhhHH
Confidence                                                              000011456789999999888899999999


Q ss_pred             hHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          257 RLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       257 SlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ||||++|||++    ||....... ....+.....++.....++.+.+|+.+||.++|.+|||+.+++.
T Consensus       207 slG~il~~l~t~g~~p~~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         207 SLGVVLWEIFTYGKQPWYQLSNNE-VIECITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            99999999996    554443333 33333333333333345678899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.93  E-value=2.2e-26  Score=248.35  Aligned_cols=199  Identities=18%  Similarity=0.180  Sum_probs=151.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------CCCcChHHHHHHHHHHHH
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYECLHIFRQIVE   93 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------~~~l~~~~~~~i~~qi~~   93 (886)
                      ..+...+|++++.+++ ++..   .+..++++|| .+++|.+++...               ...+++..++.++.||+.
T Consensus        60 ~~~~~l~h~~iv~~~~-~~~~---~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~  135 (283)
T cd05091          60 MMRSRLQHPNIVCLLG-VVTK---EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAA  135 (283)
T ss_pred             HHHhcCCCCCcCeEEE-EEcC---CCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHH
Confidence            3445567888888776 4433   3567888888 788999998421               234788899999999999


Q ss_pred             HHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhccccccccc
Q 002736           94 IVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQL  173 (886)
Q Consensus        94 ~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  173 (886)
                      ||.|||++||+||||||+||+++.++.+|++|||+++.........                                  
T Consensus       136 aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~----------------------------------  181 (283)
T cd05091         136 GMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYK----------------------------------  181 (283)
T ss_pred             HHHHHHHcCccccccchhheEecCCCceEecccccccccccchhee----------------------------------
Confidence            9999999999999999999999999999999999985432110000                                  


Q ss_pred             ccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCccc
Q 002736          174 VTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS  253 (886)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~s  253 (886)
                                                                            ......+++.|+|||.+.+..++.++
T Consensus       182 ------------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~  207 (283)
T cd05091         182 ------------------------------------------------------LMGNSLLPIRWMSPEAIMYGKFSIDS  207 (283)
T ss_pred             ------------------------------------------------------eccCccCCccccCHHHHhcCCCCcch
Confidence                                                                  00011456789999999888899999


Q ss_pred             ccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          254 DIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       254 DIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |||||||++|||++    ||... ........+......+.....+..+.+|+.+||+.+|.+||++.++++
T Consensus       208 Dv~slG~~l~el~~~g~~p~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~  278 (283)
T cd05091         208 DIWSYGVVLWEVFSYGLQPYCGY-SNQDVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHS  278 (283)
T ss_pred             hHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence            99999999999997    55433 333444444444444444556677889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.93  E-value=3.8e-26  Score=247.19  Aligned_cols=198  Identities=17%  Similarity=0.169  Sum_probs=149.1

Q ss_pred             ccccCCCCCCccccccccCCceEEEEeeCCcchhhhhc----CCCCCcChHHHHHHHHHHHHHHHhhccc-CeeecccCC
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLD----KPKRSVDVYECLHIFRQIVEIVYAAHSQ-GIVVHNVRP  110 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~----~~~~~l~~~~~~~i~~qi~~~l~~lHs~-giiHrDlkP  110 (886)
                      +|++++.+++ ++.+   .+..+++|||.+.+|.++..    .....+++..+..++.||+.||+|||+. ||+||||||
T Consensus        61 ~~~~iv~~~~-~~~~---~~~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp  136 (288)
T cd06616          61 DCPYIVKFYG-ALFR---EGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKP  136 (288)
T ss_pred             CCCCEeeeee-EEec---CCcEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCH
Confidence            4888888777 4432   45678999998777765432    2235789999999999999999999975 999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.+|++|||++.......                                                      
T Consensus       137 ~Nil~~~~~~~kl~dfg~~~~~~~~~------------------------------------------------------  162 (288)
T cd06616         137 SNILLDRNGNIKLCDFGISGQLVDSI------------------------------------------------------  162 (288)
T ss_pred             HHEEEccCCcEEEeecchhHHhccCC------------------------------------------------------
Confidence            99999999999999999985331110                                                      


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC---CCCcccccchHHHHHHHHhc
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA---PVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~---~~s~~sDIwSlGvil~eLl~  267 (886)
                                                           ......|+..|+|||.+.+.   .++.++|||||||++|||++
T Consensus       163 -------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~  205 (288)
T cd06616         163 -------------------------------------AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVAT  205 (288)
T ss_pred             -------------------------------------ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHh
Confidence                                                 00112568889999999876   58999999999999999998


Q ss_pred             ---CCCCCchhhHHhHhhccCCCCh----hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPP----QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                         ||.........+........+.    .....++.+.+|+.+||..+|.+|||+.+++.||||...
T Consensus       206 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~~  273 (288)
T cd06616         206 GKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKDY  273 (288)
T ss_pred             CCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhch
Confidence               7755443222222222221111    112356678899999999999999999999999999764

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.93  E-value=3.1e-26  Score=246.37  Aligned_cols=199  Identities=14%  Similarity=0.138  Sum_probs=148.1

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC------CCcChHHHHHHHHHHHHHHHhhcccCe
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK------RSVDVYECLHIFRQIVEIVYAAHSQGI  103 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~------~~l~~~~~~~i~~qi~~~l~~lHs~gi  103 (886)
                      .+...+|++++..++ ++.   ..+.++++||| .|++|.+++....      ..+++..++.++.||+.||.|||++||
T Consensus        62 ~l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i  137 (277)
T cd05036          62 IMSKFNHQNIVRLIG-VSF---ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHF  137 (277)
T ss_pred             HHHhCCCCCEeeEEE-EEc---cCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            445567888888776 333   34567889998 7899999995432      257899999999999999999999999


Q ss_pred             eecccCCcceeeccCC---ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          104 VVHNVRPSCFVMSSFN---HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       104 iHrDlkP~NIll~~~~---~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      +||||||+||+++..+   .+|++|||+++.........                                         
T Consensus       138 vH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~-----------------------------------------  176 (277)
T cd05036         138 IHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYR-----------------------------------------  176 (277)
T ss_pred             eecccchheEEEeccCCCcceEeccCccccccCCcccee-----------------------------------------
Confidence            9999999999998654   59999999986542110000                                         


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     .......+..|+|||.+.+..++.++|||||||
T Consensus       177 -----------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~  209 (277)
T cd05036         177 -----------------------------------------------KGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGV  209 (277)
T ss_pred             -----------------------------------------------cCCCCCccHhhCCHHHHhcCCcCchhHHHHHHH
Confidence                                                           000012345699999998888999999999999


Q ss_pred             HHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       261 il~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      ++|||++    ||...... ..+..+.....+..+...++.+.+++.+||..+|.+||++.++++|
T Consensus       210 il~el~~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         210 LLWEIFSLGYMPYPGRTNQ-EVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             HHHHHHcCCCCCCCCCCHH-HHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            9999996    66543332 2333333322233334456778899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.93  E-value=4e-26  Score=246.60  Aligned_cols=201  Identities=17%  Similarity=0.239  Sum_probs=148.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ ++.   ....++++||| .+++|..++... ..+++..++.++.||+.||.|||++||+||||
T Consensus        52 ~~l~~~~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl  126 (286)
T cd07847          52 RMLKQLKHPNLVNLIE-VFR---RKRKLHLVFEYCDHTVLNELEKNP-RGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDV  126 (286)
T ss_pred             HHHHhCCCCCEeeeee-EEe---eCCEEEEEEeccCccHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCceecCC
Confidence            3455567888888766 443   34578899999 666666666443 56899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++........                                                   
T Consensus       127 ~p~nil~~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------  155 (286)
T cd07847         127 KPENILITKQGQIKLCDFGFARILTGPGD---------------------------------------------------  155 (286)
T ss_pred             ChhhEEEcCCCcEEECccccceecCCCcc---------------------------------------------------
Confidence            99999999999999999999854321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             ......++.+|+|||.+.+ ..++.++|||||||++|||++
T Consensus       156 ---------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~  196 (286)
T cd07847         156 ---------------------------------------DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLT  196 (286)
T ss_pred             ---------------------------------------cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHh
Confidence                                                   0001256888999999876 458999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhc---c-----------------CCCC---------hhhhccChhhHHHHHHccCCCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLR---H-----------------RVLP---------PQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~---~-----------------~~~~---------~~~~~~~~~~~~li~~~L~~dP~~Rps  315 (886)
                         ||.........+....   .                 ...+         ......++.+.+|+.+||.++|.+||+
T Consensus       197 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  276 (286)
T cd07847         197 GQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLS  276 (286)
T ss_pred             CCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCC
Confidence               6644333222211100   0                 0000         011234566789999999999999999


Q ss_pred             HHHHhcCCCC
Q 002736          316 MGELLQSEFL  325 (886)
Q Consensus       316 ~~eil~h~~~  325 (886)
                      +.|++.||||
T Consensus       277 ~~eil~~~~f  286 (286)
T cd07847         277 CEELLEHPYF  286 (286)
T ss_pred             HHHHhcCCCC
Confidence            9999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.93  E-value=3.9e-26  Score=247.74  Aligned_cols=194  Identities=17%  Similarity=0.197  Sum_probs=149.7

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---------------CCCCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---------------PKRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---------------~~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      +|++++..++ +|.   ..+.++++||| .+++|.+++..               ....+++..++.++.||+.||+|||
T Consensus        74 ~h~~i~~~~~-~~~---~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH  149 (293)
T cd05053          74 KHKNIINLLG-VCT---QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA  149 (293)
T ss_pred             CCCCeeeEEE-EEc---CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence            6888888766 554   34578999998 88899999853               2356899999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+||+++.++.+|++|||+++.........                                        
T Consensus       150 ~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~----------------------------------------  189 (293)
T cd05053         150 SKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYR----------------------------------------  189 (293)
T ss_pred             HCCccccccceeeEEEcCCCeEEeCcccccccccccccee----------------------------------------
Confidence            9999999999999999999999999999986542211000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       190 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  221 (293)
T cd05053         190 ------------------------------------------------KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG  221 (293)
T ss_pred             ------------------------------------------------ccCCCCCCccccCHHHhccCCcCcccceeehh
Confidence                                                            00001235569999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      |++|||++    ||.... .......+.....++......+.+.+|+.+||.++|.+|||+.|++++
T Consensus       222 ~il~el~~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         222 VLLWEIFTLGGSPYPGIP-VEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             hHHHHHhcCCCCCCCCCC-HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            99999986    664333 333344444444444444566788899999999999999999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.93  E-value=3.4e-26  Score=248.25  Aligned_cols=202  Identities=19%  Similarity=0.236  Sum_probs=150.1

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+....|++++...+ ++... ..+.+|++|||.+++|.+++......+++.+++.++.||+.||.|||++||+|+||||
T Consensus        57 ~l~~l~h~ni~~~~~-~~~~~-~~~~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p  134 (293)
T cd07843          57 ILLKLQHPNIVTVKE-VVVGS-NLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKT  134 (293)
T ss_pred             HHHhcCCCCEEEEEE-EEEec-CCCcEEEEehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCH
Confidence            344456888877655 44332 2378999999977899999966555789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.+|++|||++........                                                     
T Consensus       135 ~nili~~~~~~~l~d~g~~~~~~~~~~-----------------------------------------------------  161 (293)
T cd07843         135 SNLLLNNRGILKICDFGLAREYGSPLK-----------------------------------------------------  161 (293)
T ss_pred             HHEEECCCCcEEEeecCceeeccCCcc-----------------------------------------------------
Confidence            999999999999999998854422100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ......+++.|+|||.+.+.. ++.++|||||||++|||++  
T Consensus       162 -------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~  204 (293)
T cd07843         162 -------------------------------------PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKK  204 (293)
T ss_pred             -------------------------------------ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCC
Confidence                                                 001125678899999987654 6899999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccC-------------------------C----CChhhhc--cChhhHHHHHHccCCCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHR-------------------------V----LPPQLLL--KFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~-------------------------~----~~~~~~~--~~~~~~~li~~~L~~dP~~Rps  315 (886)
                       ||...... .....+...                         .    ....+..  ..+.+.++|.+||+.+|++|||
T Consensus       205 ~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t  283 (293)
T cd07843         205 PLFPGKSEI-DQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRIS  283 (293)
T ss_pred             CCCCCCChH-HHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCC
Confidence             55433222 111111000                         0    0011111  2456779999999999999999


Q ss_pred             HHHHhcCCCC
Q 002736          316 MGELLQSEFL  325 (886)
Q Consensus       316 ~~eil~h~~~  325 (886)
                      +.|+++||||
T Consensus       284 ~~ell~~~~f  293 (293)
T cd07843         284 AEDALKHPYF  293 (293)
T ss_pred             HHHHhcCCCC
Confidence            9999999997

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=5.8e-26  Score=244.24  Aligned_cols=199  Identities=15%  Similarity=0.194  Sum_probs=152.8

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      ..|++++..++ ++.   ....++++||| .|++|.+++..  ..+++..++.++.||+.||.|||++||+|+||+|+||
T Consensus        59 ~~~~~vi~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni  132 (277)
T cd06917          59 SQPPNITKYYG-SYL---KGPRLWIIMEYAEGGSVRTLMKA--GPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANI  132 (277)
T ss_pred             CCCCCeeeEee-eee---eCCEEEEEEecCCCCcHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHE
Confidence            45888888666 443   34678899998 78999999855  3689999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      +++.++.++++|||++........                                                        
T Consensus       133 ~i~~~~~~~l~dfg~~~~~~~~~~--------------------------------------------------------  156 (277)
T cd06917         133 LVTNTGNVKLCDFGVAALLNQNSS--------------------------------------------------------  156 (277)
T ss_pred             EEcCCCCEEEccCCceeecCCCcc--------------------------------------------------------
Confidence            999999999999998854321100                                                        


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc---CC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC---PF  269 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~---pf  269 (886)
                                                        ......|+..|+|||.+.+. .++.++|+|||||++|+|++   ||
T Consensus       157 ----------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~  202 (277)
T cd06917         157 ----------------------------------KRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPY  202 (277)
T ss_pred             ----------------------------------ccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCC
Confidence                                              00112678889999998754 47899999999999999999   66


Q ss_pred             CCCchhhHHhHhhccCCCChhhh-ccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          270 STGEEKTRTMSSLRHRVLPPQLL-LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      ......... ..+.....+.... ...+.+.+++.+||..||.+||++.+++.|+||.....
T Consensus       203 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~~~  263 (277)
T cd06917         203 SDVDAFRAM-MLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKAHSK  263 (277)
T ss_pred             CCCChhhhh-hccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhhChHhhcccc
Confidence            544332222 2222222222222 24567889999999999999999999999999976543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=233.40  Aligned_cols=318  Identities=15%  Similarity=0.204  Sum_probs=253.5

Q ss_pred             ccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEec
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .+.|+..|.+++|++.+++++.+++     ++...|+++.-+|--+.+|.|..+|+|.||++..        ...+..+.
T Consensus       175 IvvGs~~G~lql~Nvrt~K~v~~f~-----~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--------dkil~sFk  241 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRTGKVVYTFQ-----EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--------DKILMSFK  241 (910)
T ss_pred             EEEeecCCcEEEEEeccCcEEEEec-----ccccceeEeccCCcceEEEEeccCceEEEEEccc--------CcEEEEEE
Confidence            4678999999999999999998884     5678999999999999999999999999999975        24456667


Q ss_pred             CC-CCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEec-ccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchh
Q 002736          616 SR-SKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMR-EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA  693 (886)
Q Consensus       616 ~~-~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~  693 (886)
                      +. +.|+.++|.-+...++|+|+..|.+.+||++..+....+. .|.+.|....|.| ....+++.+.|.++++|=..++
T Consensus       242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~  320 (910)
T KOG1539|consen  242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSG  320 (910)
T ss_pred             ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCC
Confidence            75 9999999998666789999999999999999887665554 6778888888886 6677888888887777733210


Q ss_pred             hh-----------------------------------------------hhccCc---------------------e---
Q 002736          694 IL-----------------------------------------------LLHLGV---------------------S---  702 (886)
Q Consensus       694 ~~-----------------------------------------------~~~~~~---------------------~---  702 (886)
                      ..                                               ...++.                     +   
T Consensus       321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~  400 (910)
T KOG1539|consen  321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE  400 (910)
T ss_pred             CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence            00                                               000000                     0   


Q ss_pred             -----------------------------------eeeeecC------CCeEEEEEeCCCCcEEEEEeCCCeEEEEecCC
Q 002736          703 -----------------------------------IGTIKTK------ANVCCVQFPLDSGRSLAFGSADHRIYYYDLRN  741 (886)
Q Consensus       703 -----------------------------------~~~~~~~------~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~  741 (886)
                                                         ...+...      ..+.+|+.++- |+..+.|+..|+|-+|++..
T Consensus       401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQS  479 (910)
T KOG1539|consen  401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQS  479 (910)
T ss_pred             eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEccc
Confidence                                               0111112      45788899988 89999999999999999998


Q ss_pred             CCcceEEE---ecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCcc------------------------------
Q 002736          742 SKIPLCTL---IGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSR------------------------------  787 (886)
Q Consensus       742 ~~~~~~~~---~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~------------------------------  787 (886)
                      +-. ...+   ..|..+|++++.. -++.++|++.+|.+++||.+.....                              
T Consensus       480 Gi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  480 GIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             Cee-ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence            864 4555   5899999999985 6678999999999999999764310                              


Q ss_pred             -----ccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEE
Q 002736          788 -----VIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVC  862 (886)
Q Consensus       788 -----~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~  862 (886)
                           ...+.++.|.||++.|+.++|||||++|++++.|++|++||+.++..+-.+.+.              .++.++.
T Consensus       559 ~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--------------~~~~sls  624 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--------------SPCTSLS  624 (910)
T ss_pred             EEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC--------------CcceeeE
Confidence                 011245678899999999999999999999999999999999999888766543              3478999


Q ss_pred             EccCCCcEEEEEeCC-CCEEEEE
Q 002736          863 WRGQSSNTLVAANSS-GNIKILE  884 (886)
Q Consensus       863 ~s~~~~~~l~s~~~d-g~I~iw~  884 (886)
                      |+|+|+ +|||+..| .-|++|.
T Consensus       625 ~SPngD-~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  625 FSPNGD-FLATVHVDQNGIYLWS  646 (910)
T ss_pred             ECCCCC-EEEEEEecCceEEEEE
Confidence            999999 99999988 7799995

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.93  E-value=4e-26  Score=243.32  Aligned_cols=211  Identities=18%  Similarity=0.187  Sum_probs=157.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..+. .+   ...+.+|++||| .|++|.+++.+. ..+++..+..++.||+.||.|||++||+|+||+
T Consensus        46 ~l~~~~h~~i~~~~~-~~---~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~  120 (265)
T cd05579          46 ILSQAQSPYVVKLYY-SF---QGKKNLYLVMEYLPGGDLASLLENV-GSLDEDVARIYIAEIVLALEYLHSNGIIHRDLK  120 (265)
T ss_pred             HHHhCCCcchhHHHH-he---ecCcEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCC
Confidence            344556888877665 22   235678899999 688999999664 378999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++...........                                                 
T Consensus       121 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-------------------------------------------------  151 (265)
T cd05579         121 PDNILIDSNGHLKLTDFGLSKVGLVRRQINL-------------------------------------------------  151 (265)
T ss_pred             HHHeEEcCCCCEEEEecccchhcccCccccc-------------------------------------------------
Confidence            9999999999999999999854321100000                                                 


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                       ...........++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       152 ---------------------------------~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~  198 (265)
T cd05579         152 ---------------------------------NDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGI  198 (265)
T ss_pred             ---------------------------------ccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCC
Confidence                                             000001112367888999999988889999999999999999998  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH---HHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM---GELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~---~eil~h~~~~~~  328 (886)
                       ||..................++.....++.+.+|+.+||+.+|.+|||+   .++|+||||...
T Consensus       199 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~~  263 (265)
T cd05579         199 PPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKGI  263 (265)
T ss_pred             CCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcCccccCC
Confidence             7755444333322222222222222236788899999999999999999   999999999854

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.93  E-value=3.6e-26  Score=245.92  Aligned_cols=203  Identities=17%  Similarity=0.179  Sum_probs=153.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++...+ ++.   ..+.+|++||| .|++|.+++.+.. ..+++.+++.++.||+.||.|||++||+|+||
T Consensus        46 ~l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di  121 (277)
T cd05577          46 ILEKVSSRFIVSLAY-AFE---TKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDL  121 (277)
T ss_pred             HHHhCCCCCEeeeee-EEe---cCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            344556888877665 332   34678999999 7899999995543 36899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      +|+||+++.++.++++|||.+.......                                                    
T Consensus       122 ~p~Nil~~~~~~~~l~dfg~~~~~~~~~----------------------------------------------------  149 (277)
T cd05577         122 KPENVLLDDHGNVRISDLGLAVELKGGK----------------------------------------------------  149 (277)
T ss_pred             CHHHEEECCCCCEEEccCcchhhhccCC----------------------------------------------------
Confidence            9999999999999999999874321100                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|+|++ 
T Consensus       150 ---------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g  190 (277)
T cd05577         150 ---------------------------------------KIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAG  190 (277)
T ss_pred             ---------------------------------------ccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhC
Confidence                                                   0001146778999999988889999999999999999998 


Q ss_pred             --CCCCCchh---hHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCCc
Q 002736          268 --PFSTGEEK---TRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       268 --pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~~  329 (886)
                        ||......   ........ ...........+.+.++|.+||+.+|.+||     ++.++++||||....
T Consensus       191 ~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~  261 (277)
T cd05577         191 RSPFRQRKEKVEKEELKRRTL-EMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLN  261 (277)
T ss_pred             CCCCCCCcccccHHHHHhccc-cccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHhChhhhcCC
Confidence              77443321   11111111 111122233567889999999999999999     888899999997643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.93  E-value=2.3e-26  Score=252.43  Aligned_cols=208  Identities=18%  Similarity=0.191  Sum_probs=151.4

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCC----CCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKP----KRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~----~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      ...+...+|++++..++ .+.+. ..+.++++|||.+++|.+++...    ...+++..++.++.||+.||.|||++||+
T Consensus        53 ~~~l~~l~h~~i~~~~~-~~~~~-~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~  130 (316)
T cd07842          53 IALLRELKHENVVSLVE-VFLEH-ADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVL  130 (316)
T ss_pred             HHHHHhcCCCCccceEE-EEeCC-CCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            34556678898888777 55432 34678999999888888877422    23689999999999999999999999999


Q ss_pred             ecccCCcceeecc----CCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          105 VHNVRPSCFVMSS----FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       105 HrDlkP~NIll~~----~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      ||||||+||+++.    .+.+|++|||++.........                                          
T Consensus       131 h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~------------------------------------------  168 (316)
T cd07842         131 HRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKP------------------------------------------  168 (316)
T ss_pred             eCCCCHHHEEEcCCCCccceEEECCCccccccCCCccc------------------------------------------
Confidence            9999999999999    899999999998643221000                                          


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLG  259 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlG  259 (886)
                                                                   ........++.+|+|||.+.+. .++.++||||||
T Consensus       169 ---------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG  203 (316)
T cd07842         169 ---------------------------------------------LADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIG  203 (316)
T ss_pred             ---------------------------------------------ccccCCccccccccCHHHHhCCCCCCcHHHHHHHH
Confidence                                                         0000112678899999988774 489999999999


Q ss_pred             HHHHHHhc---CCCCCchhh--------HHhHhh----------------------------ccCCCC-hh-------hh
Q 002736          260 VLLFELFC---PFSTGEEKT--------RTMSSL----------------------------RHRVLP-PQ-------LL  292 (886)
Q Consensus       260 vil~eLl~---pf~~~~~~~--------~~~~~~----------------------------~~~~~~-~~-------~~  292 (886)
                      |+||||++   ||.......        ..+..+                            .....+ ..       ..
T Consensus       204 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (316)
T cd07842         204 CIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHK  283 (316)
T ss_pred             HHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhcc
Confidence            99999999   664332211        000000                            000001 00       00


Q ss_pred             ccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          293 LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       293 ~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ...+.+.+++.+||.+||++|||+.|+++||||
T Consensus       284 ~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         284 KPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             CCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence            334567799999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.93  E-value=3.7e-26  Score=245.81  Aligned_cols=199  Identities=14%  Similarity=0.098  Sum_probs=149.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC---------CCcChHHHHHHHHHHHHHHHhhc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK---------RSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~---------~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      ..+...+|++++..++ ++.   ....++++||| .+++|.+++.+..         ..++...+..++.||+.||.|||
T Consensus        61 ~~l~~l~~~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH  136 (277)
T cd05062          61 SVMKEFNCHHVVRLLG-VVS---QGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN  136 (277)
T ss_pred             HHHHhCCCCCeeeEEE-EEc---CCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            3445567888888766 443   34568889998 8899999985421         23567889999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      +.||+||||||+||+++.++.++++|||+++.........                                        
T Consensus       137 ~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~----------------------------------------  176 (277)
T cd05062         137 ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR----------------------------------------  176 (277)
T ss_pred             HCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceee----------------------------------------
Confidence            9999999999999999999999999999985432110000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       177 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  208 (277)
T cd05062         177 ------------------------------------------------KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFG  208 (277)
T ss_pred             ------------------------------------------------cCCCCccCHhhcChhHhhcCCcCchhHHHHHH
Confidence                                                            00001456789999999988899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||.... .............++.....++.+.+++.+||+.+|.+||++.|+++
T Consensus       209 ~~l~el~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  273 (277)
T cd05062         209 VVLWEIATLAEQPYQGMS-NEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIIS  273 (277)
T ss_pred             HHHHHHHcCCCCCCCCCC-HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            99999996    554333 33333333333333333445677889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.93  E-value=3.6e-26  Score=253.69  Aligned_cols=206  Identities=16%  Similarity=0.248  Sum_probs=155.1

Q ss_pred             eeecccccccCCCCCCcccccccc---CCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAA---IDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ..+...+|++++...+ ++.....   ...++++|||.|++|.+++..  ..+++..++.++.||+.||.|||++||+||
T Consensus        66 ~~l~~l~h~~iv~~~~-~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~--~~l~~~~~~~i~~qi~~al~~LH~~gi~H~  142 (343)
T cd07880          66 RLLKHMKHENVIGLLD-VFTPDLSLDRFHDFYLVMPFMGTDLGKLMKH--EKLSEDRIQFLVYQMLKGLKYIHAAGIIHR  142 (343)
T ss_pred             HHHHhcCCCCccceee-eecCCccccccceEEEEEecCCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            3455668888887766 4433222   235789999999999998854  468999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++.++.++++|||++......                                                   
T Consensus       143 dlkp~Nill~~~~~~kl~dfg~~~~~~~~---------------------------------------------------  171 (343)
T cd07880         143 DLKPGNLAVNEDCELKILDFGLARQTDSE---------------------------------------------------  171 (343)
T ss_pred             CCCHHHEEEcCCCCEEEeecccccccccC---------------------------------------------------
Confidence            99999999999999999999998533111                                                   


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eL  265 (886)
                                                                .....++++|+|||.+.+ ..++.++|||||||++|+|
T Consensus       172 ------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l  209 (343)
T cd07880         172 ------------------------------------------MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEM  209 (343)
T ss_pred             ------------------------------------------ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence                                                      001256889999999876 3488999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccC-------------------------CC----ChhhhccChhhHHHHHHccCCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHR-------------------------VL----PPQLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~-------------------------~~----~~~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      ++   ||............+...                         ..    ........+.+.+++.+||+.||.+|
T Consensus       210 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R  289 (343)
T cd07880         210 LTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESR  289 (343)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhC
Confidence            99   665443322222111100                         00    01112345667899999999999999


Q ss_pred             CCHHHHhcCCCCCCCcCc
Q 002736          314 PKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       314 ps~~eil~h~~~~~~~~~  331 (886)
                      ||+.++++||||......
T Consensus       290 ~t~~~~l~~~~~~~~~~~  307 (343)
T cd07880         290 ITAAEALAHPYFEEFHDP  307 (343)
T ss_pred             CCHHHHhcCccHhhhcCc
Confidence            999999999999875443

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.93  E-value=2.8e-26  Score=254.01  Aligned_cols=211  Identities=16%  Similarity=0.198  Sum_probs=153.8

Q ss_pred             ceeecccccccCCCCCCcccccc--ccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           29 GVELTHGDHLRNQGGLSGVCENE--AAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ...+...+|++++..++ ++...  ......+++|||.+++|.+++..  ..+++..++.++.||+.||.|||++||+||
T Consensus        54 ~~~l~~l~h~niv~~~~-~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~--~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~  130 (336)
T cd07849          54 IKILRRFKHENIIGILD-IIRPPSFESFNDVYIVQELMETDLYKLIKT--QHLSNDHIQYFLYQILRGLKYIHSANVLHR  130 (336)
T ss_pred             HHHHHhCCCCCcCchhh-eeecccccccceEEEEehhcccCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecc
Confidence            33455566888887766 44322  23346799999988899988854  468999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++..+.+|++|||++..........                                               
T Consensus       131 dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~-----------------------------------------------  163 (336)
T cd07849         131 DLKPSNLLLNTNCDLKICDFGLARIADPEHDHT-----------------------------------------------  163 (336)
T ss_pred             CCCHHHEEECCCCCEEECcccceeecccccccc-----------------------------------------------
Confidence            999999999999999999999985432110000                                               


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eL  265 (886)
                                                              .......|+++|+|||.+.+ ..++.++|||||||++|||
T Consensus       164 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el  203 (336)
T cd07849         164 ----------------------------------------GFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEM  203 (336)
T ss_pred             ----------------------------------------CCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence                                                    00011367999999998765 4589999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhh---ccCC---------------------C-C-----hhhhccChhhHHHHHHccCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSL---RHRV---------------------L-P-----PQLLLKFPKEASFCLWLLHPEPSG  312 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~---~~~~---------------------~-~-----~~~~~~~~~~~~li~~~L~~dP~~  312 (886)
                      ++   ||...... ..+..+   ....                     . +     .......+.+.+|+.+||+.+|.+
T Consensus       204 ~~G~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~  282 (336)
T cd07849         204 LSNRPLFPGKDYL-HQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHK  282 (336)
T ss_pred             HhCCCCCCCCCHH-HHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhh
Confidence            99   56433211 111100   0000                     0 0     011234567889999999999999


Q ss_pred             CCCHHHHhcCCCCCCCcC
Q 002736          313 RPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       313 Rps~~eil~h~~~~~~~~  330 (886)
                      |||+.|+++||||.....
T Consensus       283 Rpt~~e~l~hp~~~~~~~  300 (336)
T cd07849         283 RITVEEALAHPYLEQYHD  300 (336)
T ss_pred             CcCHHHHhcCccccccCC
Confidence            999999999999986543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.93  E-value=8e-26  Score=241.11  Aligned_cols=205  Identities=22%  Similarity=0.279  Sum_probs=155.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+   ...+.+++++|| .+++|.+++.+. ..+++..++.++.||+.||.|||+.||+|+||
T Consensus        51 ~~~~~l~~~~i~~~~~-~~---~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl  125 (264)
T cd06626          51 KVLELLKHPNLVKYYG-VE---VHREKVYIFMEYCSGGTLEELLEHG-RILDEHVIRVYTLQLLEGLAYLHSHGIVHRDI  125 (264)
T ss_pred             HHHHhCCCCChhheee-eE---ecCCEEEEEEecCCCCcHHHHHhhc-CCCChHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            3455567888887776 33   235678899999 789999999654 45799999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      +|+||+++..+.+|++|||++...........                                                
T Consensus       126 ~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~------------------------------------------------  157 (264)
T cd06626         126 KPANIFLDHNGVIKLGDFGCAVKLKNNTTTMG------------------------------------------------  157 (264)
T ss_pred             CHHHEEECCCCCEEEcccccccccCCCCCccc------------------------------------------------
Confidence            99999999999999999999865422210000                                                


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC---CCcccccchHHHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP---VSCASDIYRLGVLLFEL  265 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~---~s~~sDIwSlGvil~eL  265 (886)
                                                            .......++..|+|||.+.+..   ++.++|||||||++|||
T Consensus       158 --------------------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l  199 (264)
T cd06626         158 --------------------------------------EEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEM  199 (264)
T ss_pred             --------------------------------------ccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHH
Confidence                                                  0000125677899999998766   89999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCCCh--hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVLPP--QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ++   ||............+.....+.  ......+.+.+|+.+||+.+|.+||++.+++.|||+
T Consensus       200 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         200 ATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             HhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            98   7755433333322222222222  222336778899999999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.93  E-value=5.9e-26  Score=246.75  Aligned_cols=200  Identities=18%  Similarity=0.204  Sum_probs=152.5

Q ss_pred             cccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecccCCcce
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHNVRPSCF  113 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrDlkP~NI  113 (886)
                      .+|++++..++ .|.+   ...++++|||.+++|..++......+++..+..++.||+.||.|||+ .||+||||+|+||
T Consensus        71 ~~~~~i~~~~~-~~~~---~~~~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~ni  146 (296)
T cd06618          71 HDCPYIVKCYG-YFIT---DSDVFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNI  146 (296)
T ss_pred             cCCCchHhhhe-eeec---CCeEEEEeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHE
Confidence            46888888777 4433   45689999998888888876545678999999999999999999997 5999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      +++.++.+||+|||++.......                                                         
T Consensus       147 ll~~~~~~kL~dfg~~~~~~~~~---------------------------------------------------------  169 (296)
T cd06618         147 LLDASGNVKLCDFGISGRLVDSK---------------------------------------------------------  169 (296)
T ss_pred             EEcCCCCEEECccccchhccCCC---------------------------------------------------------
Confidence            99999999999999884331110                                                         


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC----CCcccccchHHHHHHHHhc--
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP----VSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~----~s~~sDIwSlGvil~eLl~--  267 (886)
                                                        ......++..|+|||.+.+..    ++.++|||||||++|||++  
T Consensus       170 ----------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~  215 (296)
T cd06618         170 ----------------------------------AKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQ  215 (296)
T ss_pred             ----------------------------------cccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCC
Confidence                                              000114577899999987653    8899999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCC--hhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCc
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLP--PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~  329 (886)
                       ||..................+  +........+.+|+.+||..||.+||++.++++||||....
T Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  280 (296)
T cd06618         216 FPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRRYE  280 (296)
T ss_pred             CCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhccc
Confidence             775543333333322222211  11123456788999999999999999999999999998643

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=211.36  Aligned_cols=237  Identities=21%  Similarity=0.342  Sum_probs=205.8

Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEE--EecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~--~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      +|..+|.+|+|+. ++..|++|+.|+++.+|+++......  .+.+|.+.|-.++|+|..+..|++++.|.+|++||+++
T Consensus        18 ~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   18 GHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            5778999999998 79999999999999999998775443  34689999999999998999999999999999999999


Q ss_pred             hhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEE
Q 002736          693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAS  771 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs  771 (886)
                             ++++..+..+..-.-+.|+|+ +.++++|+.|..|.+.|.|+.+. +... .....+.-+.|. ++++++...
T Consensus        97 -------~k~~~~i~~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~-~~~~-~~~~e~ne~~w~~~nd~Fflt~  166 (313)
T KOG1407|consen   97 -------GKCTARIETKGENINITWSPD-GEYIAVGNKDDRITFIDARTYKI-VNEE-QFKFEVNEISWNNSNDLFFLTN  166 (313)
T ss_pred             -------CcEEEEeeccCcceEEEEcCC-CCEEEEecCcccEEEEEecccce-eehh-cccceeeeeeecCCCCEEEEec
Confidence                   888888888887788999999 89999999999999999998873 4333 344567888887 777887777


Q ss_pred             CCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCcc
Q 002736          772 TDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPET  851 (886)
Q Consensus       772 ~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  851 (886)
                      ..|+|.|-.....      +|+.++++|.....|+.|+|+|+|+|+||.|-.+.+||+..--++..+             
T Consensus       167 GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-------------  227 (313)
T KOG1407|consen  167 GLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-------------  227 (313)
T ss_pred             CCceEEEEecccc------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-------------
Confidence            7899999998866      789999999999999999999999999999999999998865444333             


Q ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCCEEE
Q 002736          852 DDAAQFISSVCWRGQSSNTLVAANSSGNIKI  882 (886)
Q Consensus       852 ~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~i  882 (886)
                      .-+.-+|..+.|+-+|. +||+|+.|..|-|
T Consensus       228 sRldwpVRTlSFS~dg~-~lASaSEDh~IDI  257 (313)
T KOG1407|consen  228 SRLDWPVRTLSFSHDGR-MLASASEDHFIDI  257 (313)
T ss_pred             ccccCceEEEEeccCcc-eeeccCccceEEe
Confidence            33456799999999999 9999999998865

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.93  E-value=3.4e-26  Score=246.92  Aligned_cols=200  Identities=22%  Similarity=0.212  Sum_probs=153.5

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC----------------CCCcChHHHHHHHHHHH
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP----------------KRSVDVYECLHIFRQIV   92 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~----------------~~~l~~~~~~~i~~qi~   92 (886)
                      ..+....|++++..++ ++.   ..+..+++||| .+++|.+++...                ...+++.++..++.||+
T Consensus        59 ~~l~~l~h~niv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~  134 (283)
T cd05090          59 SLMAELHHPNIVCLLG-VVT---QEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIA  134 (283)
T ss_pred             HHHhhCCCCCeeeEEE-EEe---cCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHH
Confidence            3455567888888666 332   34678899999 788999998422                13478899999999999


Q ss_pred             HHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccc
Q 002736           93 EIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQ  172 (886)
Q Consensus        93 ~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  172 (886)
                      .||.|||++||+||||||+|||++.++.+|++|||+++........                                  
T Consensus       135 ~al~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~----------------------------------  180 (283)
T cd05090         135 AGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYY----------------------------------  180 (283)
T ss_pred             HHHHHHHhcCeehhccccceEEEcCCCcEEeccccccccccCCcce----------------------------------
Confidence            9999999999999999999999999999999999998643211000                                  


Q ss_pred             cccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcc
Q 002736          173 LVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCA  252 (886)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~  252 (886)
                                                                            .......++..|+|||.+.+..++.+
T Consensus       181 ------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~  206 (283)
T cd05090         181 ------------------------------------------------------RVQPKSLLPIRWMPPEAIMYGKFSSD  206 (283)
T ss_pred             ------------------------------------------------------ecccCCCccceecChHHhccCCCCch
Confidence                                                                  00011134667999999988889999


Q ss_pred             cccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          253 SDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       253 sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      +|||||||+||||++    ||.... ....+..+.....++......+.+.+++.+||+.+|.+||++.+++++
T Consensus       207 ~Dv~slG~il~el~~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         207 SDIWSFGVVLWEIFSFGLQPYYGFS-NQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             hhhHHHHHHHHHHHcCCCCCCCCCC-HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            999999999999997    665443 334455555555555555667888999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.93  E-value=6.9e-26  Score=244.01  Aligned_cols=197  Identities=17%  Similarity=0.169  Sum_probs=151.5

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-------------CCCcChHHHHHHHHHHHHHHHh
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-------------KRSVDVYECLHIFRQIVEIVYA   97 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-------------~~~l~~~~~~~i~~qi~~~l~~   97 (886)
                      +....|++++..++ ++..   ...++++||| .|++|.++|...             ...+++.++..++.||+.||.|
T Consensus        62 l~~l~~~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~  137 (280)
T cd05049          62 LTNFQHENIVKFYG-VCTE---GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVY  137 (280)
T ss_pred             HHhcCCCCchheee-EEec---CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            44557888888776 4443   3678899998 899999999543             1357889999999999999999


Q ss_pred             hcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCC
Q 002736           98 AHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus        98 lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  177 (886)
                      ||++||+||||||+||+++.++.+|++|||++..........                                      
T Consensus       138 lH~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~--------------------------------------  179 (280)
T cd05049         138 LASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYR--------------------------------------  179 (280)
T ss_pred             HhhCCeeccccccceEEEcCCCeEEECCcccceecccCccee--------------------------------------
Confidence            999999999999999999999999999999985432110000                                      


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccch
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwS  257 (886)
                                                                        ......++..|+|||.+.+..++.++||||
T Consensus       180 --------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  209 (280)
T cd05049         180 --------------------------------------------------VGGHTMLPIRWMPPESIMYRKFTTESDVWS  209 (280)
T ss_pred             --------------------------------------------------cCCCCcccceecChhhhccCCcchhhhHHH
Confidence                                                              000114567899999999988999999999


Q ss_pred             HHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          258 LGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       258 lGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |||++|||++    ||...... .....+.....+......+..+.+++.+||..||.+||++.|+++
T Consensus       210 lG~il~e~~~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         210 FGVVLWEIFTYGKQPWYGLSNE-EVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             HHHHHHHHHhcCCCCCCCCCHH-HHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            9999999996    66544433 333334444444444456678889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.93  E-value=5.8e-26  Score=244.58  Aligned_cols=197  Identities=15%  Similarity=0.095  Sum_probs=149.0

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+....|++++..++ .|..    ...+++||| .+++|.+++.+....+++.+++.++.||+.||.|||++||+|||||
T Consensus        62 ~l~~~~~~~i~~~~~-~~~~----~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlk  136 (279)
T cd05109          62 VMAGVGSPYVCRLLG-ICLT----STVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLA  136 (279)
T ss_pred             HHHhcCCCCCceEEE-EEcC----CCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence            344567788877665 5542    234566776 8899999997655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||+..++.+|++|||+++.........                                                  
T Consensus       137 p~Nil~~~~~~~kL~dfG~~~~~~~~~~~~--------------------------------------------------  166 (279)
T cd05109         137 ARNVLVKSPNHVKITDFGLARLLDIDETEY--------------------------------------------------  166 (279)
T ss_pred             cceEEEcCCCcEEECCCCceeeccccccee--------------------------------------------------
Confidence            999999999999999999986442110000                                                  


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......+++.|+|||.+.+..++.++|||||||++|||++  
T Consensus       167 --------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g  208 (279)
T cd05109         167 --------------------------------------HADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFG  208 (279)
T ss_pred             --------------------------------------ecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCC
Confidence                                                  0000123567999999988889999999999999999986  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||.... .......+.....++.....++.+.+++.+||..||.+||++.+++.
T Consensus       209 ~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         209 AKPYDGIP-AREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             CCCCCCCC-HHHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence              553332 23233334443344444556778889999999999999999999985

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.93  E-value=4e-26  Score=250.32  Aligned_cols=213  Identities=17%  Similarity=0.171  Sum_probs=152.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|++++..++ ++.   ..+.++++||| .+++|.+++.+. ...+++..++.+++||+.||.|||++||+|||
T Consensus        51 ~~l~~l~h~~i~~~~~-~~~---~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~d  126 (314)
T cd08216          51 ITSRQLQHPNILPYVT-SFI---VDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRS  126 (314)
T ss_pred             HHHHhcCCcchhhhhh-eee---cCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCC
Confidence            3444557888888766 332   34568889998 778999999643 34689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.+|++|||.+..........                                                
T Consensus       127 lk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~------------------------------------------------  158 (314)
T cd08216         127 VKASHILLSGDGKVVLSGLRYSVSMIKHGKRQ------------------------------------------------  158 (314)
T ss_pred             CCcceEEEecCCceEEecCccceeeccccccc------------------------------------------------
Confidence            99999999999999999999875331110000                                                


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC--CCCcccccchHHHHHHHH
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA--PVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~--~~s~~sDIwSlGvil~eL  265 (886)
                                                         ...........++..|+|||.+.+.  .++.++|||||||++|||
T Consensus       159 -----------------------------------~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el  203 (314)
T cd08216         159 -----------------------------------RVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACEL  203 (314)
T ss_pred             -----------------------------------cccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHH
Confidence                                               0000000112567889999998763  488999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCC--------CC------------------------hhhhccChhhHHHHHHccCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRV--------LP------------------------PQLLLKFPKEASFCLWLLHPEP  310 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~--------~~------------------------~~~~~~~~~~~~li~~~L~~dP  310 (886)
                      ++   ||............+....        .+                        .......+++.+|+.+||.+||
T Consensus       204 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P  283 (314)
T cd08216         204 ANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDP  283 (314)
T ss_pred             HhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCC
Confidence            98   7765544333322221110        00                        0001112456789999999999


Q ss_pred             CCCCCHHHHhcCCCCCCCc
Q 002736          311 SGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       311 ~~Rps~~eil~h~~~~~~~  329 (886)
                      .+|||+.++|+||||....
T Consensus       284 ~~Rpt~~~ll~~p~~~~~~  302 (314)
T cd08216         284 ESRPSASQLLNHSFFKQCK  302 (314)
T ss_pred             CcCcCHHHHhcCchHhhhc
Confidence            9999999999999998654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=6.3e-25  Score=211.68  Aligned_cols=250  Identities=19%  Similarity=0.294  Sum_probs=195.5

Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCc---eEEEEecccCCcEEEEEEc-cCCCCEEEEEeCCCcEEEEeC
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRS---QVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSI  690 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~---~~~~~~~~h~~~v~~v~~~-p~~~~~l~sgs~Dg~v~lwd~  690 (886)
                      .|..-|..+..+- -+..|||++.|++|+|+.++.+   +.+.++.+|.++||.+.|. |.-|++||+|+.||.|.||.-
T Consensus         9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            4666666665553 4889999999999999999764   5688999999999999995 556899999999999999998


Q ss_pred             chhhhhhccCceeeeeecCCCeEEEEEeCCC-CcEEEEEeCCCeEEEEecCCCC--cceEEEecCCCCeEEEEec----C
Q 002736          691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDS-GRSLAFGSADHRIYYYDLRNSK--IPLCTLIGHNKTVSYVKFV----D  763 (886)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~~l~~gs~Dg~I~vwDlr~~~--~~~~~~~~h~~~V~~v~f~----~  763 (886)
                      .++.-    .+....-.|.+.|++|+|-|.. |-.|++++.||.|.+.+.++..  ........|.-.|++|+|.    +
T Consensus        88 ~~g~w----~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   88 ENGRW----TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             CCCch----hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            77311    1111112357889999999974 5679999999999999988752  1233456899999999994    3


Q ss_pred             C-----------CEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCC----CEEEEEcCCCcEEEEe
Q 002736          764 A-----------TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD----GYVATGSETNEVFVYH  828 (886)
Q Consensus       764 ~-----------~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g----~~lasgs~Dg~v~iwd  828 (886)
                      |           ..|+||+.|+.|+||+.....-    ...++|.+|++.|+.|+|.|.-    .+||++|.||+|.||.
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW----KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcch----hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence            3           4699999999999999987632    3356699999999999999984    3899999999999998


Q ss_pred             cCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          829 KAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                      .........-          .-.+.-...+..+.||..|+ +|+.++.|..|.+|.
T Consensus       240 ~~~e~e~wk~----------tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  240 KDEEYEPWKK----------TLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWK  284 (299)
T ss_pred             ecCccCcccc----------cccccCCcceEEEEEecccc-EEEEecCCcEEEEEE
Confidence            7632111110          11122345699999999999 999999999999996

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.93  E-value=5e-26  Score=242.64  Aligned_cols=202  Identities=22%  Similarity=0.240  Sum_probs=159.0

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecccC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHNVR  109 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrDlk  109 (886)
                      +....|++++..++ ++.   ..+..+++||| .|++|.+++... ..+++..+..++.||++||.|||+ +|++|+||+
T Consensus        53 l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~  127 (264)
T cd06623          53 LRSCESPYVVKCYG-AFY---KEGEISIVLEYMDGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIK  127 (264)
T ss_pred             HHhcCCCCeeeEEE-EEc---cCCeEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCC
Confidence            34455888877666 333   23678889999 779999999654 678999999999999999999999 999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++........                                                    
T Consensus       128 ~~ni~~~~~~~~~l~df~~~~~~~~~~~----------------------------------------------------  155 (264)
T cd06623         128 PSNLLINSKGEVKIADFGISKVLENTLD----------------------------------------------------  155 (264)
T ss_pred             HHHEEECCCCCEEEccCccceecccCCC----------------------------------------------------
Confidence            9999999999999999998854321100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++||||||+++|+|++  
T Consensus       156 --------------------------------------~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~  197 (264)
T cd06623         156 --------------------------------------QCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGK  197 (264)
T ss_pred             --------------------------------------cccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                  0011256888999999988889999999999999999999  


Q ss_pred             -CCCCCc--hhhHHhHhhccCCCChhhhc-cChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 -PFSTGE--EKTRTMSSLRHRVLPPQLLL-KFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                       ||....  ........+.....+..... .+..+.+++.+||.++|++||++.++++|||++..
T Consensus       198 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~~  262 (264)
T cd06623         198 FPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIKKA  262 (264)
T ss_pred             CCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhCHHHHhc
Confidence             665553  33334444444444443334 56778899999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.93  E-value=4.1e-26  Score=252.12  Aligned_cols=211  Identities=18%  Similarity=0.219  Sum_probs=156.9

Q ss_pred             eecccccccCCCCCCccccccc--cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEA--AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++...+ ++.+..  ....+|++|||.+++|.+++.+. ..+++..++.++.||+.||.|||++||+|+||
T Consensus        52 ~l~~l~~~~i~~~~~-~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~-~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dl  129 (330)
T cd07834          52 LLRHLRHENIIGLLD-ILRPPSPEDFNDVYIVTELMETDLHKVIKSP-QPLTDDHIQYFLYQILRGLKYLHSANVIHRDL  129 (330)
T ss_pred             HHHhcCCcchhhhhh-hhcccCcccccceEEEecchhhhHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            344456888877666 554432  33468999999888999999654 48899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.++++|||++.........                                                  
T Consensus       130 kp~nili~~~~~~~L~dfg~~~~~~~~~~~--------------------------------------------------  159 (330)
T cd07834         130 KPSNILVNSNCDLKICDFGLARGVDPDEDE--------------------------------------------------  159 (330)
T ss_pred             CHHHEEEcCCCCEEEcccCceEeecccccc--------------------------------------------------
Confidence            999999999999999999998543221000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~  267 (886)
                                                           +.......++++|+|||.+.+. .++.++|||||||++|+|++
T Consensus       160 -------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~  202 (330)
T cd07834         160 -------------------------------------KGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLT  202 (330)
T ss_pred             -------------------------------------cccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHc
Confidence                                                 0001123678999999999887 79999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccC---CC---------------------------ChhhhccChhhHHHHHHccCCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHR---VL---------------------------PPQLLLKFPKEASFCLWLLHPEPSGRP  314 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~---~~---------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rp  314 (886)
                         ||....... .+..+...   ..                           .......++.+.+|+.+||.++|.+||
T Consensus       203 g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp  281 (330)
T cd07834         203 RKPLFPGRDYID-QLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRI  281 (330)
T ss_pred             CCCCcCCCCHHH-HHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCC
Confidence               554433221 11111110   00                           001122456778999999999999999


Q ss_pred             CHHHHhcCCCCCCCcCc
Q 002736          315 KMGELLQSEFLNEPRDS  331 (886)
Q Consensus       315 s~~eil~h~~~~~~~~~  331 (886)
                      ++.++++||||.....+
T Consensus       282 t~~~ll~~~~~~~~~~~  298 (330)
T cd07834         282 TADEALAHPYLAQLHDP  298 (330)
T ss_pred             CHHHHHhCccHHhhccc
Confidence            99999999999875443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=5.3e-26  Score=249.68  Aligned_cols=203  Identities=21%  Similarity=0.249  Sum_probs=150.7

Q ss_pred             cccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCC-CcChHHHHHHHHHHHHHHHhhcc
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKR-SVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~-~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      |..|  ...+++..|+|.+.++| +|.+...  ..++|+|| ..|+|.++|..... .++|...++|+.+++.||+|||.
T Consensus       118 F~~E--i~~ls~l~H~Nlv~LlG-yC~e~~~--~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~  192 (361)
T KOG1187|consen  118 FLNE--VEILSRLRHPNLVKLLG-YCLEGGE--HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHE  192 (361)
T ss_pred             HHHH--HHHHhcCCCcCcccEEE-EEecCCc--eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHcc
Confidence            4444  44556666999999877 7765332  68899999 77899999966555 88999999999999999999999


Q ss_pred             cC---eeecccCCcceeeccCCceeeeeCCccCCCCC-CccccccccccccccCCCCCCCchhhhhhhcccccccccccC
Q 002736          101 QG---IVVHNVRPSCFVMSSFNHVSFIESASCSDSGS-DSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTA  176 (886)
Q Consensus       101 ~g---iiHrDlkP~NIll~~~~~vki~dfg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  176 (886)
                      ..   ||||||||+||||+++.+.|++|||+|+.... ..                                        
T Consensus       193 ~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~----------------------------------------  232 (361)
T KOG1187|consen  193 GCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDT----------------------------------------  232 (361)
T ss_pred             CCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCcccc----------------------------------------
Confidence            64   99999999999999999999999999943321 10                                        


Q ss_pred             CCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeee-ccccceecccccCCCCCCccccc
Q 002736          177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILL-METNWYASPEELAGAPVSCASDI  255 (886)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~gt~~Y~aPE~~~~~~~s~~sDI  255 (886)
                                                                         ..... .||..|+|||.+..+..+.++||
T Consensus       233 ---------------------------------------------------~~~~~~~gt~gY~~PEy~~~g~lt~KsDV  261 (361)
T KOG1187|consen  233 ---------------------------------------------------SVSTTVMGTFGYLAPEYASTGKLTEKSDV  261 (361)
T ss_pred             ---------------------------------------------------ceeeecCCCCccCChhhhccCCcCccccc
Confidence                                                               11111 68999999999988889999999


Q ss_pred             chHHHHHHHHhc---CCCCCc---hh---hHHhHhhcc----CCCChhhh-ccC------hhhHHHHHHccCCCCCCCCC
Q 002736          256 YRLGVLLFELFC---PFSTGE---EK---TRTMSSLRH----RVLPPQLL-LKF------PKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       256 wSlGvil~eLl~---pf~~~~---~~---~~~~~~~~~----~~~~~~~~-~~~------~~~~~li~~~L~~dP~~Rps  315 (886)
                      |||||+|.||++   +.....   ..   .-....+..    ....+.+. ...      ..+..+..+|++.+|..||+
T Consensus       262 ySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~  341 (361)
T KOG1187|consen  262 YSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPT  341 (361)
T ss_pred             ccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcC
Confidence            999999999999   333221   11   111112222    12233322 222      22458889999999999999


Q ss_pred             HHHHhc
Q 002736          316 MGELLQ  321 (886)
Q Consensus       316 ~~eil~  321 (886)
                      |.|+++
T Consensus       342 m~~Vv~  347 (361)
T KOG1187|consen  342 MSQVVK  347 (361)
T ss_pred             HHHHHH
Confidence            999754

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.93  E-value=9.1e-26  Score=241.21  Aligned_cols=199  Identities=13%  Similarity=0.135  Sum_probs=154.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .+++|.+++......+++..++.++.||+.||.|||++||+|+||
T Consensus        57 ~~l~~l~h~~i~~~~~-~~~---~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di  132 (266)
T cd05033          57 SIMGQFDHPNIIRLEG-VVT---KSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDL  132 (266)
T ss_pred             HHHHhCCCCCcceEeE-EEe---cCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            3455667888888776 332   34668899998 788999999766567899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++.........  .                                               
T Consensus       133 ~p~nili~~~~~~~l~dfg~~~~~~~~~~~--~-----------------------------------------------  163 (266)
T cd05033         133 AARNILVNSNLVCKVSDFGLSRRLEDSEAT--Y-----------------------------------------------  163 (266)
T ss_pred             CcceEEEcCCCCEEECccchhhcccccccc--e-----------------------------------------------
Confidence            999999999999999999998654311000  0                                               


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       164 ---------------------------------------~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~  204 (266)
T cd05033         164 ---------------------------------------TTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSY  204 (266)
T ss_pred             ---------------------------------------eccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHcc
Confidence                                                   0000133567999999988889999999999999999986 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||..... ......+......+.....++.+.+++.+||..+|.+||++.++++
T Consensus       205 g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~  260 (266)
T cd05033         205 GERPYWDMSN-QDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVS  260 (266)
T ss_pred             CCCCCCCCCH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence               6644433 3333444433333444456778889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.93  E-value=4.8e-26  Score=241.88  Aligned_cols=194  Identities=15%  Similarity=0.118  Sum_probs=147.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ ++..  ....++++||| .+++|.+++.+.. ..+++..++.++.||+.||.|||++||+||||
T Consensus        52 ~l~~l~~~~i~~~~~-~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  128 (256)
T cd05082          52 VMTQLRHSNLVQLLG-VIVE--EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDL  128 (256)
T ss_pred             HHHhCCCCCeeeEEE-EEEc--CCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEecccc
Confidence            344557888877665 3221  23567889999 7789999996543 34789999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||+++......                                                    
T Consensus       129 kp~nil~~~~~~~kl~dfg~~~~~~~~~----------------------------------------------------  156 (256)
T cd05082         129 AARNVLVSEDNVAKVSDFGLTKEASSTQ----------------------------------------------------  156 (256)
T ss_pred             chheEEEcCCCcEEecCCccceeccccC----------------------------------------------------
Confidence            9999999999999999999885321100                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                               ....++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       157 -----------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~  195 (256)
T cd05082         157 -----------------------------------------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSF  195 (256)
T ss_pred             -----------------------------------------CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhC
Confidence                                                     00123456999999988889999999999999999996 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||..... ......+.....+......++.+.+++.+||..+|.+|||+.++++
T Consensus       196 g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         196 GRVPYPRIPL-KDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             CCCCCCCCCH-HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence               5643332 2233333333333333455678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.93  E-value=8e-26  Score=245.82  Aligned_cols=190  Identities=14%  Similarity=0.119  Sum_probs=145.1

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC---------------CCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK---------------RSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~---------------~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|++++..++ ++.   ..+.++++||| .+++|.++|.+..               ..+++..++.|+.||+.||+|||
T Consensus        61 ~hp~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH  136 (297)
T cd05089          61 HHPNIINLLG-ACE---NRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS  136 (297)
T ss_pred             CCCchhheEE-EEc---cCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5888887766 443   24567888999 7889999995421               34788999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.+|++|||++.......                                           
T Consensus       137 ~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~-------------------------------------------  173 (297)
T cd05089         137 EKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYV-------------------------------------------  173 (297)
T ss_pred             HCCcccCcCCcceEEECCCCeEEECCcCCCcccccee-------------------------------------------
Confidence            9999999999999999999999999999874211000                                           


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      .......+..|+|||.+.+..++.++||||||
T Consensus       174 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG  205 (297)
T cd05089         174 ------------------------------------------------KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFG  205 (297)
T ss_pred             ------------------------------------------------ccCCCCcCccccCchhhccCCCCchhhHHHHH
Confidence                                                            00000124469999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||....... ....+.....++.....++.+.+|+.+||..+|.+||+++++++
T Consensus       206 ~il~el~t~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  270 (297)
T cd05089         206 VLLWEIVSLGGTPYCGMTCAE-LYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISV  270 (297)
T ss_pred             HHHHHHHcCCCCCCCCCCHHH-HHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            99999995    665444333 33333333333334456678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.93  E-value=7.8e-26  Score=246.45  Aligned_cols=194  Identities=15%  Similarity=0.179  Sum_probs=149.0

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcce
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF  113 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NI  113 (886)
                      +|++++..++ .|.   ..+..+++||| .+++|.+++.... ..+++.+++.|+.||+.||.|||++||+|+||||+||
T Consensus        97 ~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Ni  172 (302)
T cd05055          97 NHENIVNLLG-ACT---IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNV  172 (302)
T ss_pred             CCCCcceEEE-EEe---cCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceE
Confidence            6888888776 343   34568999999 7899999995432 3489999999999999999999999999999999999


Q ss_pred             eeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          114 VMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       114 ll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |++.++.++++|||+++........                                                       
T Consensus       173 l~~~~~~~~l~dfg~~~~~~~~~~~-------------------------------------------------------  197 (302)
T cd05055         173 LLTHGKIVKICDFGLARDIMNDSNY-------------------------------------------------------  197 (302)
T ss_pred             EEcCCCeEEECCCcccccccCCCce-------------------------------------------------------
Confidence            9999999999999998544211000                                                       


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc----CC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PF  269 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf  269 (886)
                                                       .......++..|+|||.+.+..++.++|||||||++|||++    ||
T Consensus       198 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~  244 (302)
T cd05055         198 ---------------------------------VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPY  244 (302)
T ss_pred             ---------------------------------eecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCc
Confidence                                             00000134678999999998889999999999999999985    66


Q ss_pred             CCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          270 STGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ............+.....+.......+.+.+|+.+||.++|++||++.|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         245 PGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             CCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            5544443333333333333333345678889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.93  E-value=9.4e-26  Score=246.85  Aligned_cols=215  Identities=15%  Similarity=0.174  Sum_probs=152.2

Q ss_pred             eecccccccCCCCCCccccccc-----cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           31 ELTHGDHLRNQGGLSGVCENEA-----AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      .+...+|++++..+. ++.+..     ....++++|||.+.+|..++......+++.+++.++.||++||.|||++||+|
T Consensus        60 ~l~~l~h~~i~~~~~-~~~~~~~~~~~~~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H  138 (311)
T cd07866          60 ILKKLKHPNVVPLID-MAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILH  138 (311)
T ss_pred             HHHhcCCCCccchhh-heecccccccccCceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            445567888887766 332221     23467999999888899888665567999999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      +||||+||+++.++.++++|||++............                                            
T Consensus       139 ~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~--------------------------------------------  174 (311)
T cd07866         139 RDIKAANILIDNQGILKIADFGLARPYDGPPPNPKG--------------------------------------------  174 (311)
T ss_pred             CCCCHHHEEECCCCCEEECcCccchhccCCCccccc--------------------------------------------
Confidence            999999999999999999999998644222100000                                            


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFE  264 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~e  264 (886)
                                                         .........+...++++|+|||.+.+. .++.++|||||||++||
T Consensus       175 -----------------------------------~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e  219 (311)
T cd07866         175 -----------------------------------GGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAE  219 (311)
T ss_pred             -----------------------------------CCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHH
Confidence                                               000000012234789999999988764 48999999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhc--cC----------------------CCCh----hhhccChhhHHHHHHccCCCCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLR--HR----------------------VLPP----QLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~--~~----------------------~~~~----~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      |++   ||..............  ..                      ..++    .+....+.+.+|+.+||..||.+|
T Consensus       220 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  299 (311)
T cd07866         220 MFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKR  299 (311)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccC
Confidence            999   4433322211111000  00                      0011    111233567799999999999999


Q ss_pred             CCHHHHhcCCCC
Q 002736          314 PKMGELLQSEFL  325 (886)
Q Consensus       314 ps~~eil~h~~~  325 (886)
                      ||+.|++.||||
T Consensus       300 ~t~~ell~~~~f  311 (311)
T cd07866         300 LTASDALEHPYF  311 (311)
T ss_pred             cCHHHHhcCCCC
Confidence            999999999997

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.4e-24  Score=248.85  Aligned_cols=286  Identities=18%  Similarity=0.223  Sum_probs=221.1

Q ss_pred             ccccc--cccceEEeeecCce----EE-EEec--cCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcc------
Q 002736          536 WINPF--LEGLCKYLSFSKLR----VK-ADLN--QGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAI------  600 (886)
Q Consensus       536 ~~~~~--~d~~~~~w~~~~~~----~~-~~l~--~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~------  600 (886)
                      +++|.  .|+.+.+|+....-    .. ..++  -.....|.+.|+|+.|+|||++||+|+.|+.|.||+....      
T Consensus        28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f  107 (942)
T KOG0973|consen   28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF  107 (942)
T ss_pred             EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc
Confidence            34555  78888899754321    01 0111  1334579999999999999999999999999999998831      


Q ss_pred             -----cCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCE
Q 002736          601 -----INENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTL  675 (886)
Q Consensus       601 -----~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~  675 (886)
                           ....+.........+|.+.|..++|+| ++.+|+|++.|++|.|||..+.+.+..+++|...|-.+.|.| -|.+
T Consensus       108 gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky  185 (942)
T KOG0973|consen  108 GSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKY  185 (942)
T ss_pred             cccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCe
Confidence                 111122233445567999999999999 899999999999999999999999999999999999999999 8999


Q ss_pred             EEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeC----CCeEEEEecCCCCcceEEEec
Q 002736          676 LASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSA----DHRIYYYDLRNSKIPLCTLIG  751 (886)
Q Consensus       676 l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~----Dg~I~vwDlr~~~~~~~~~~~  751 (886)
                      ||+-++|++|++|++.+-........+........-...+.|+|| |++|++..+    -.++.|.+-.+.+. -..+.|
T Consensus       186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD-G~~las~nA~n~~~~~~~IieR~tWk~-~~~LvG  263 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD-GHHLASPNAVNGGKSTIAIIERGTWKV-DKDLVG  263 (942)
T ss_pred             eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC-cCeecchhhccCCcceeEEEecCCcee-eeeeec
Confidence            999999999999998763222111222222223445889999999 899998643    45688888766663 667889


Q ss_pred             CCCCeEEEEec------CCC------------EEEEEECCCcEEEEeCCCCCccccCCCceEee-cCCCceeEEEEecCC
Q 002736          752 HNKTVSYVKFV------DAT------------TLVSASTDNTLKLWDLSMCTSRVIDTPLHSFT-GHTNVKNFVGLSVWD  812 (886)
Q Consensus       752 h~~~V~~v~f~------~~~------------~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp~g  812 (886)
                      |.+++.+++|+      +..            .+|+||.|++|-||.....      +|+.... -....|..++|+|||
T Consensus       264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~------RPl~vi~~lf~~SI~DmsWspdG  337 (942)
T KOG0973|consen  264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP------RPLFVIHNLFNKSIVDMSWSPDG  337 (942)
T ss_pred             CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC------CchhhhhhhhcCceeeeeEcCCC
Confidence            99999999994      222            6789999999999999765      4444322 224579999999999


Q ss_pred             CEEEEEcCCCcEEEEecCC
Q 002736          813 GYVATGSETNEVFVYHKAF  831 (886)
Q Consensus       813 ~~lasgs~Dg~v~iwd~~~  831 (886)
                      -.|..+|.||+|.+.++..
T Consensus       338 ~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  338 FSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CeEEEEecCCeEEEEEcch
Confidence            9999999999999999874

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.93  E-value=8.9e-26  Score=242.04  Aligned_cols=201  Identities=14%  Similarity=0.102  Sum_probs=149.8

Q ss_pred             eecccccccCCCCCCccccccc---cCCceEEEEee-CCcchhhhhcC-----CCCCcChHHHHHHHHHHHHHHHhhccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEW-GDVSLRQWLDK-----PKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~e~-~g~sL~~~l~~-----~~~~l~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      .+...+|++++..++ .|....   .....+++||| .+++|.+++..     ....+++..++.++.||+.||.|||++
T Consensus        53 ~l~~l~h~~iv~~~~-~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~  131 (272)
T cd05075          53 CMKEFDHPNVMRLIG-VCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK  131 (272)
T ss_pred             HHHhCCCCCcceEEE-EEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC
Confidence            445568888888766 543222   22356777888 78899998732     224578999999999999999999999


Q ss_pred             CeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcc
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++.+|++|||+++.........                                          
T Consensus       132 ~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~------------------------------------------  169 (272)
T cd05075         132 SFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYR------------------------------------------  169 (272)
T ss_pred             CeeccccchhheEEcCCCCEEECCCCcccccCccccee------------------------------------------
Confidence            99999999999999999999999999985432110000                                          


Q ss_pred             ccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHH
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvi  261 (886)
                                                                    ......+++.|+|||.+.+..++.++|||||||+
T Consensus       170 ----------------------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~i  203 (272)
T cd05075         170 ----------------------------------------------QGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVT  203 (272)
T ss_pred             ----------------------------------------------cCCcccCCcccCCHHHccCCCcChHHHHHHHHHH
Confidence                                                          0000134667999999998889999999999999


Q ss_pred             HHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       262 l~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +|||++    ||.. .........+.....++........+.+++.+||..+|.+|||+.++++
T Consensus       204 l~el~~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~  266 (272)
T cd05075         204 MWEIATRGQTPYPG-VENSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRC  266 (272)
T ss_pred             HHHHHcCCCCCCCC-CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            999987    5543 3333444444444333334455677889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=5.1e-26  Score=245.68  Aligned_cols=204  Identities=18%  Similarity=0.140  Sum_probs=150.5

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+....|++++..++ ++.+. ....++++||| .|++|.+++.+....+++.++..++.||+.||.|||++||+|||
T Consensus        57 ~~~l~~l~h~~i~~~~~-~~~~~-~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~d  134 (284)
T cd05079          57 IEILRNLYHENIVKYKG-ICTED-GGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRD  134 (284)
T ss_pred             HHHHHhCCCCCeeeeee-EEecC-CCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecc
Confidence            33455678888888666 55442 23557889999 79999999966555689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++++|||++..........                                                
T Consensus       135 lkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~------------------------------------------------  166 (284)
T cd05079         135 LAARNVLVESEHQVKIGDFGLTKAIETDKEYY------------------------------------------------  166 (284)
T ss_pred             cchheEEEcCCCCEEECCCccccccccCccce------------------------------------------------
Confidence            99999999999999999999986442110000                                                


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             .......++..|+|||.+.+..++.++|||||||++|||++
T Consensus       167 ---------------------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt  207 (284)
T cd05079         167 ---------------------------------------TVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLT  207 (284)
T ss_pred             ---------------------------------------eecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhc
Confidence                                                   00001245667999999988889999999999999999998


Q ss_pred             ---CCCCCc--------------hhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGE--------------EKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         |+....              ........+......+.+...++.+.+|+.+||+.+|.+||++.++++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  278 (284)
T cd05079         208 YCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIE  278 (284)
T ss_pred             CCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence               221110              001111112222223334456678889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=7.8e-26  Score=244.40  Aligned_cols=202  Identities=20%  Similarity=0.221  Sum_probs=149.8

Q ss_pred             ecccccccCCCCCCcccccccc--CCceEEEEeeCCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           32 LTHGDHLRNQGGLSGVCENEAA--IDPFVHAIEWGDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~e~~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      +...+|++++..++ ++.+...  ...++++|||.+++|.+++.... ..+++..++.++.||+.||.|||++||+|+||
T Consensus        55 l~~~~h~~i~~~~~-~~~~~~~~~~~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l  133 (287)
T cd07838          55 LESFEHPNIVRLLD-VCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDL  133 (287)
T ss_pred             hhccCCCCcceEEE-EEeeccCCCCceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccC
Confidence            34457888888777 4433221  12388999997789999986532 36899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      +|+||+++.++.+|++|||++........                                                   
T Consensus       134 ~~~nili~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------  162 (287)
T cd07838         134 KPQNILVTSDGQVKIADFGLARIYSFEMA---------------------------------------------------  162 (287)
T ss_pred             ChhhEEEccCCCEEEeccCcceeccCCcc---------------------------------------------------
Confidence            99999999999999999998854321100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                              .....++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       163 ----------------------------------------~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~  202 (287)
T cd07838         163 ----------------------------------------LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRR  202 (287)
T ss_pred             ----------------------------------------cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhC
Confidence                                                    001146788999999998889999999999999999998 


Q ss_pred             --CCCCCchhhHHhHhhccC-----------------CCC--------hhhhccChhhHHHHHHccCCCCCCCCCHHHHh
Q 002736          268 --PFSTGEEKTRTMSSLRHR-----------------VLP--------PQLLLKFPKEASFCLWLLHPEPSGRPKMGELL  320 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~-----------------~~~--------~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil  320 (886)
                        ||................                 .++        .......+.+.++|.+||..||.+||++.+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il  282 (287)
T cd07838         203 RPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEAL  282 (287)
T ss_pred             CCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHh
Confidence              554333222211111100                 000        00112345667999999999999999999999


Q ss_pred             cCCCC
Q 002736          321 QSEFL  325 (886)
Q Consensus       321 ~h~~~  325 (886)
                      +||||
T Consensus       283 ~~~~~  287 (287)
T cd07838         283 QHPYF  287 (287)
T ss_pred             cCcCC
Confidence            99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.93  E-value=9.9e-26  Score=246.00  Aligned_cols=193  Identities=17%  Similarity=0.185  Sum_probs=147.6

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|++++..++ ++..   .+.++++||| .+++|.++|.+.               ...++...++.++.||+.||.|||
T Consensus        79 ~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH  154 (304)
T cd05101          79 KHKNIINLLG-ACTQ---DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA  154 (304)
T ss_pred             cCCCchheeE-EEec---CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            6888887776 4433   4678899999 788999999542               124778899999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+||+++.++.+|++|||+++.........                                        
T Consensus       155 ~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~----------------------------------------  194 (304)
T cd05101         155 SQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYK----------------------------------------  194 (304)
T ss_pred             HCCeeecccccceEEEcCCCcEEECCCccceecccccccc----------------------------------------
Confidence            9999999999999999999999999999986442211000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||++.+..++.++||||||
T Consensus       195 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  226 (304)
T cd05101         195 ------------------------------------------------KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG  226 (304)
T ss_pred             ------------------------------------------------cccCCCCCceeeCchhhccCCCCchhhHHHHH
Confidence                                                            00001345679999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||.. .........+............+..+.+|+.+||..+|.+||++.|+++
T Consensus       227 ~~l~el~~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  291 (304)
T cd05101         227 VLMWEIFTLGGSPYPG-IPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVE  291 (304)
T ss_pred             HHHHHHHcCCCCCccc-CCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence            99999987    4533 3333344444443333334456678889999999999999999999987

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.93  E-value=8.2e-26  Score=243.87  Aligned_cols=201  Identities=17%  Similarity=0.234  Sum_probs=151.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+.+.+|++.+..++ ++.   ..+..+++|||.+++|.+++.... ..+++..++.++.||+.||.|||++|++|+||+
T Consensus        51 ~l~~l~~~~iv~~~~-~~~---~~~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~  126 (283)
T cd07835          51 LLKELNHPNIVRLLD-VVH---SENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLK  126 (283)
T ss_pred             HHHhcCCCCccCHhh-eec---cCCeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC
Confidence            455567888888776 443   347889999998789999996543 468999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++...+....                                                    
T Consensus       127 p~nil~~~~~~~~l~df~~~~~~~~~~~----------------------------------------------------  154 (283)
T cd07835         127 PQNLLIDREGALKLADFGLARAFGVPVR----------------------------------------------------  154 (283)
T ss_pred             HHHEEEcCCCcEEEeecccccccCCCcc----------------------------------------------------
Confidence            9999999999999999999854321100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ......++..|+|||.+.+. .++.++|||||||++|||++ 
T Consensus       155 --------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g  196 (283)
T cd07835         155 --------------------------------------TYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNR  196 (283)
T ss_pred             --------------------------------------ccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhC
Confidence                                                  00011457889999988764 47899999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhccC---------------------------CCChhhhccChhhHHHHHHccCCCCCCCCCHHH
Q 002736          268 --PFSTGEEKTRTMSSLRHR---------------------------VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGE  318 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  318 (886)
                        ||................                           ..........+.+.+++.+||+.+|.+||++.|
T Consensus       197 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~  276 (283)
T cd07835         197 RPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKA  276 (283)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence              665443322222111100                           000111233466789999999999999999999


Q ss_pred             HhcCCCC
Q 002736          319 LLQSEFL  325 (886)
Q Consensus       319 il~h~~~  325 (886)
                      +++||||
T Consensus       277 il~~~~~  283 (283)
T cd07835         277 ALQHPYF  283 (283)
T ss_pred             HhcCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=2.2e-25  Score=215.13  Aligned_cols=267  Identities=16%  Similarity=0.236  Sum_probs=222.8

Q ss_pred             cccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecC
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS  616 (886)
Q Consensus       537 ~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~  616 (886)
                      |++..|+.=-+-+-.++.-+     |.+.+|++.|.+..++.+...-|+++.|-+-||||.-+.        -.+..+.|
T Consensus        33 isa~kd~~pmlr~g~tgdwi-----gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--------delhsf~h   99 (334)
T KOG0278|consen   33 ISASKDGKPMLRNGDTGDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--------DELHSFEH   99 (334)
T ss_pred             EEeccCCCchhccCCCCCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--------hhhhhhhh
Confidence            55555665555555565544     345789999999999999999999999999999997653        12334568


Q ss_pred             CCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCce-EEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhh
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ-VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       617 ~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~  695 (886)
                      ...|..++|+. +.+.|++|+.+..++|+|++..+ +..++.+|.+.|..+-|.. ..+.+++.++|++|++||.++   
T Consensus       100 khivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rT---  174 (334)
T KOG0278|consen  100 KHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRT---  174 (334)
T ss_pred             hheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEecc---
Confidence            88999999997 78899999999999999998765 5788999999999999996 778888889999999999999   


Q ss_pred             hhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCC
Q 002736          696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDN  774 (886)
Q Consensus       696 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg  774 (886)
                          +..++++..+.+|+++.++++ |++|.++ ..+.|.+||..+... +..+... ..|.+...+ +...++.|+.|.
T Consensus       175 ----gt~v~sL~~~s~VtSlEvs~d-G~ilTia-~gssV~Fwdaksf~~-lKs~k~P-~nV~SASL~P~k~~fVaGged~  246 (334)
T KOG0278|consen  175 ----GTEVQSLEFNSPVTSLEVSQD-GRILTIA-YGSSVKFWDAKSFGL-LKSYKMP-CNVESASLHPKKEFFVAGGEDF  246 (334)
T ss_pred             ----CcEEEEEecCCCCcceeeccC-CCEEEEe-cCceeEEeccccccc-eeeccCc-cccccccccCCCceEEecCcce
Confidence                899999999999999999999 7766554 467899999998774 5555432 346666665 778999999999


Q ss_pred             cEEEEeCCCCCccccCCCceEe-ecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcc
Q 002736          775 TLKLWDLSMCTSRVIDTPLHSF-TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA  835 (886)
Q Consensus       775 ~i~lwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~  835 (886)
                      .++.||..++..      +..+ +||-++|.||.|+|+|...|+||+||+|++|.+..++.-
T Consensus       247 ~~~kfDy~TgeE------i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  247 KVYKFDYNTGEE------IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EEEEEeccCCce------eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            999999999853      5555 899999999999999999999999999999998876544

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.93  E-value=7.7e-26  Score=244.82  Aligned_cols=205  Identities=14%  Similarity=0.109  Sum_probs=153.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC---------CCcChHHHHHHHHHHHHHHHhhcc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK---------RSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~---------~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .+...+|++++..++ ++.   ..+..|++||| .+++|.+++.+..         ..++...+..++.||+.||.|||+
T Consensus        62 ~l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~  137 (288)
T cd05061          62 VMKGFTCHHVVRLLG-VVS---KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA  137 (288)
T ss_pred             HHHhCCCCCeeeEEE-EEc---CCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            445567888888776 433   23568999999 7899999995321         234567889999999999999999


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      +||+||||||+||+++.++.++++|||+++.........                                         
T Consensus       138 ~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~-----------------------------------------  176 (288)
T cd05061         138 KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYR-----------------------------------------  176 (288)
T ss_pred             CCCcCCCCChheEEEcCCCcEEECcCCcccccccccccc-----------------------------------------
Confidence            999999999999999999999999999985432110000                                         


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     ......++..|+|||.+.+..++.++|||||||
T Consensus       177 -----------------------------------------------~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~  209 (288)
T cd05061         177 -----------------------------------------------KGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGV  209 (288)
T ss_pred             -----------------------------------------------ccCCCcccccccCHHHhccCCCChHhHHHHHHH
Confidence                                                           000013466799999998888999999999999


Q ss_pred             HHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc------CCCCCCC
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ------SEFLNEP  328 (886)
Q Consensus       261 il~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~------h~~~~~~  328 (886)
                      ++|||++    ||..... ......+.....++.....++.+.+++.+||+.+|.+||++.++++      ||||.+.
T Consensus       210 ~l~el~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~  286 (288)
T cd05061         210 VLWEITSLAEQPYQGLSN-EQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEV  286 (288)
T ss_pred             HHHHHHhCCCCCCCCCCH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCCC
Confidence            9999997    6644332 3333333333333333445678899999999999999999999986      8888764

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.93  E-value=7e-26  Score=255.02  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=121.3

Q ss_pred             CcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCc
Q 002736           78 SVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPL  157 (886)
Q Consensus        78 ~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (886)
                      .+++.++..++.||+.||.|||++||+||||||+|||++.++.+|++|||+++........                   
T Consensus       233 ~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~-------------------  293 (400)
T cd05105         233 GLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNY-------------------  293 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccc-------------------
Confidence            4678888999999999999999999999999999999999999999999998543211000                   


Q ss_pred             hhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccc
Q 002736          158 DMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNW  237 (886)
Q Consensus       158 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~  237 (886)
                                                                                           .......+++.
T Consensus       294 ---------------------------------------------------------------------~~~~~~~~~~~  304 (400)
T cd05105         294 ---------------------------------------------------------------------VSKGSTFLPVK  304 (400)
T ss_pred             ---------------------------------------------------------------------cccCCcCCCcc
Confidence                                                                                 00001145778


Q ss_pred             eecccccCCCCCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCC
Q 002736          238 YASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       238 Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      |+|||.+.+..++.++|||||||++|||++    ||............+.....++.....++.+.+++.+||..+|.+|
T Consensus       305 y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R  384 (400)
T cd05105         305 WMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKR  384 (400)
T ss_pred             eEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHC
Confidence            999999998889999999999999999985    6654433333444444443344444566778899999999999999


Q ss_pred             CCHHHHhc
Q 002736          314 PKMGELLQ  321 (886)
Q Consensus       314 ps~~eil~  321 (886)
                      |++.++.+
T Consensus       385 Pt~~~l~~  392 (400)
T cd05105         385 PSFLHLSD  392 (400)
T ss_pred             cCHHHHHH
Confidence            99998865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.93  E-value=7.6e-26  Score=243.97  Aligned_cols=201  Identities=20%  Similarity=0.288  Sum_probs=152.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+...+|++++..++ ++.+   .+.++++|||.+++|.+++......+++.+++.++.||+.||.|||++||+|+||||
T Consensus        51 ~l~~l~~~~i~~~~~-~~~~---~~~~~~v~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p  126 (283)
T cd05118          51 LLKELNHPNIIKLLD-VFRH---KGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKP  126 (283)
T ss_pred             HHHHhcCCCcchHHH-hhcc---CCCEEEEEeccCCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCH
Confidence            444556888887666 4443   377899999977899999976556889999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||.+........                                                     
T Consensus       127 ~nili~~~~~~~l~df~~~~~~~~~~~-----------------------------------------------------  153 (283)
T cd05118         127 ENLLINTEGVLKLADFGLARSFGSPVR-----------------------------------------------------  153 (283)
T ss_pred             HHEEECCCCcEEEeeeeeeEecCCCcc-----------------------------------------------------
Confidence            999999999999999998854322100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ......++.+|+|||.+.+. .++.++|||||||++|+|++  
T Consensus       154 -------------------------------------~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~  196 (283)
T cd05118         154 -------------------------------------PYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRR  196 (283)
T ss_pred             -------------------------------------cccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCC
Confidence                                                 00112568889999999876 68999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhcc--C--------------------------CCChhhhccChhhHHHHHHccCCCCCCCCCHHH
Q 002736          268 -PFSTGEEKTRTMSSLRH--R--------------------------VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGE  318 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~--~--------------------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  318 (886)
                       ||...............  .                          .........+.++.+||.+||.+||.+||++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~  276 (283)
T cd05118         197 PLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQ  276 (283)
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHH
Confidence             55433322111111100  0                          000112234567889999999999999999999


Q ss_pred             HhcCCCC
Q 002736          319 LLQSEFL  325 (886)
Q Consensus       319 il~h~~~  325 (886)
                      ++.||||
T Consensus       277 ll~~~~~  283 (283)
T cd05118         277 ALAHPYF  283 (283)
T ss_pred             HhhCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=5.5e-24  Score=207.68  Aligned_cols=239  Identities=18%  Similarity=0.267  Sum_probs=213.1

Q ss_pred             ceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEe
Q 002736          610 PVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS  689 (886)
Q Consensus       610 ~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd  689 (886)
                      |+..++|..+++.|.+|. ++.+|+|++.|.++.||-.-.|+.+.++.+|.+.|||++.+- +...+++|+.|.+++|||
T Consensus         3 pi~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEE
Confidence            566778999999999998 799999999999999999889999999999999999999995 889999999999999999


Q ss_pred             CchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeC-----CCeEEEEecCCC------CcceEEEecCCCCeEE
Q 002736          690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSA-----DHRIYYYDLRNS------KIPLCTLIGHNKTVSY  758 (886)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~-----Dg~I~vwDlr~~------~~~~~~~~~h~~~V~~  758 (886)
                      +.+       ++.+..++.+..|..+.|+++ +++++....     .+.|.++|++..      +.|...+..+.+.++.
T Consensus        81 v~t-------Gk~la~~k~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~  152 (327)
T KOG0643|consen   81 VET-------GKQLATWKTNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS  152 (327)
T ss_pred             cCC-------CcEEEEeecCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence            999       999999999999999999999 777776643     467999999943      3468888889999999


Q ss_pred             EEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCccee
Q 002736          759 VKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALS  837 (886)
Q Consensus       759 v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~  837 (886)
                      +-|. -++.|++|..||.|..||.+++.     ..+.+-..|...|+.+.++++..+++|||.|.+.++||..+-+.+.+
T Consensus       153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~-----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt  227 (327)
T KOG0643|consen  153 ALWGPLGETIIAGHEDGSISIYDARTGK-----ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT  227 (327)
T ss_pred             eeecccCCEEEEecCCCcEEEEEcccCc-----eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence            9996 88999999999999999999974     44667778999999999999999999999999999999999988887


Q ss_pred             eccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCC
Q 002736          838 FNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSG  878 (886)
Q Consensus       838 ~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg  878 (886)
                      +...              .+|++.+++|... .++.|+...
T Consensus       228 y~te--------------~PvN~aaisP~~d-~VilgGGqe  253 (327)
T KOG0643|consen  228 YTTE--------------RPVNTAAISPLLD-HVILGGGQE  253 (327)
T ss_pred             eeec--------------ccccceecccccc-eEEecCCce
Confidence            7632              3599999999988 777777654

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.93  E-value=5.6e-26  Score=252.14  Aligned_cols=205  Identities=16%  Similarity=0.251  Sum_probs=152.8

Q ss_pred             ceeecccccccCCCCCCcccccc---ccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENE---AAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ...+....|++++.+++ ++...   .....++++|||.+.+|..++.   ..+++.++..++.||+.||.|||++||+|
T Consensus        65 ~~~l~~l~h~niv~~~~-~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~i~H  140 (342)
T cd07879          65 LTLLKHMQHENVIGLLD-VFTSAVSGDEFQDFYLVMPYMQTDLQKIMG---HPLSEDKVQYLVYQMLCGLKYIHSAGIIH  140 (342)
T ss_pred             HHHHHhcCCCCccchhh-eecccccCCCCceEEEEecccccCHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            34455567888887666 44322   1234579999998788888763   35899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+||+++.++.+|++|||+++.....                                                  
T Consensus       141 ~dlkp~NIll~~~~~~kL~dfg~~~~~~~~--------------------------------------------------  170 (342)
T cd07879         141 RDLKPGNLAVNEDCELKILDFGLARHADAE--------------------------------------------------  170 (342)
T ss_pred             CCCCHHHEEECCCCCEEEeeCCCCcCCCCC--------------------------------------------------
Confidence            999999999999999999999998532110                                                  


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFE  264 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~e  264 (886)
                                                                 .....++++|+|||.+.+ ..++.++|||||||++||
T Consensus       171 -------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~e  207 (342)
T cd07879         171 -------------------------------------------MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAE  207 (342)
T ss_pred             -------------------------------------------CCCceeeecccChhhhcCccccCchHHHHHHHHHHHH
Confidence                                                       001256889999999876 458999999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhcc------------------------CCCC-----hhhhccChhhHHHHHHccCCCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRH------------------------RVLP-----PQLLLKFPKEASFCLWLLHPEPSG  312 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~------------------------~~~~-----~~~~~~~~~~~~li~~~L~~dP~~  312 (886)
                      |++   ||............+..                        ...+     ..+....+.+.+|+.+||+.||.+
T Consensus       208 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~  287 (342)
T cd07879         208 MLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDK  287 (342)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhh
Confidence            999   77544322211111100                        0000     011234566789999999999999


Q ss_pred             CCCHHHHhcCCCCCCCcC
Q 002736          313 RPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       313 Rps~~eil~h~~~~~~~~  330 (886)
                      ||++.+++.||||.....
T Consensus       288 R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         288 RLTATEALEHPYFDSFRD  305 (342)
T ss_pred             CcCHHHHhcCcchhhccc
Confidence            999999999999987654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.2e-23  Score=198.10  Aligned_cols=258  Identities=19%  Similarity=0.234  Sum_probs=204.6

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeC--CC-CCeEEEec-CCC
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNS--YI-KSQIASSN-FEG  640 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~--~~-~~~las~s-~Dg  640 (886)
                      .+|.+.|+|.+|+|+|+++|||+.|+.||+.-++.......  .......-|.+.|..++|-.  .. +.+|++++ .|.
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~--g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT--GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc--CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            57999999999999999999999999999987764322211  11122334889999999953  22 34666665 366


Q ss_pred             cEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeC
Q 002736          641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPL  719 (886)
Q Consensus       641 ~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp  719 (886)
                      .|.+-|..+++....+.+|.+-|.++--.  ++.++++|+.|.+|+.||++-+..+..++.....-. ....|..|+..|
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence            77777999999999999999999887433  689999999999999999998433322222111100 135699999999


Q ss_pred             CCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeec
Q 002736          720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTG  798 (886)
Q Consensus       720 ~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~  798 (886)
                      . |++|++|-.|....+||+|.++ ++..+..|...|.+|.|+ ...+++|+|.|..|++-|+...-..  .-++.....
T Consensus       242 s-grll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~--el~~~vv~e  317 (350)
T KOG0641|consen  242 S-GRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH--ELPIMVVAE  317 (350)
T ss_pred             C-cceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh--cCceEEEEe
Confidence            9 9999999999999999999888 699999999999999998 6679999999999999999753210  134566778


Q ss_pred             CCCceeEEEEecCCCEEEEEcCCCcEEEEecC
Q 002736          799 HTNVKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       799 h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~  830 (886)
                      |+..+..+.|+|..--+++.|.|.++.+|-+.
T Consensus       318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999999999999999999999753

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.93  E-value=5.1e-26  Score=241.91  Aligned_cols=189  Identities=17%  Similarity=0.204  Sum_probs=143.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .|..    +..+++||| .+++|.+++.+....++...++.+++||+.||.|||++||+|||||
T Consensus        54 ~l~~l~h~~i~~~~~-~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlk  128 (259)
T cd05037          54 LMSQLSHKHLVKLYG-VCVR----DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVC  128 (259)
T ss_pred             HHHcCCCcchhheee-EEec----CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCc
Confidence            455667888888776 5543    456889999 8899999997654578999999999999999999999999999999


Q ss_pred             CcceeeccCC-------ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          110 PSCFVMSSFN-------HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       110 P~NIll~~~~-------~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |+|||++..+       .+|++|||++......                                               
T Consensus       129 p~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----------------------------------------------  161 (259)
T cd05037         129 GKNILVARYGLNEGYVPFIKLSDPGIPITVLSR-----------------------------------------------  161 (259)
T ss_pred             cceEEEecCccccCCceeEEeCCCCcccccccc-----------------------------------------------
Confidence            9999999877       7999999988533110                                               


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC--CCCcccccchHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA--PVSCASDIYRLGV  260 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~--~~s~~sDIwSlGv  260 (886)
                                                                     ....++..|+|||.+.+.  .++.++|||||||
T Consensus       162 -----------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~  194 (259)
T cd05037         162 -----------------------------------------------EERVERIPWIAPECIRNGQASLTIAADKWSFGT  194 (259)
T ss_pred             -----------------------------------------------cccccCCCccChhhhcCCCCCcchhhHHHHHHH
Confidence                                                           001456679999999876  6899999999999


Q ss_pred             HHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       261 il~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ++|||++    ||..... .............+  ......+.+++.+||..+|.+||++.++++
T Consensus       195 ~~~~l~~~~~~p~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         195 TLLEICSNGEEPLSTLSS-SEKERFYQDQHRLP--MPDCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             HHHHHHhCCCCCcccCCc-hhHHHHHhcCCCCC--CCCchHHHHHHHHHhccChhhCCCHHHHHH
Confidence            9999987    4433321 11111111111111  112267889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.93  E-value=5.9e-26  Score=245.06  Aligned_cols=202  Identities=16%  Similarity=0.247  Sum_probs=150.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCC--CCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPK--RSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~--~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|++++..++ .+.   ..+.++++|||..++|.+++....  ..+++..++.++.||+.||.|||++||+|||
T Consensus        50 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~d  125 (284)
T cd07836          50 SLMKELKHENIVRLHD-VIH---TENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRD  125 (284)
T ss_pred             HHHHhhcCCCEeeeee-eEe---eCCcEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence            3444557888888776 333   246789999997789999985433  4689999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++++|||++........                                                  
T Consensus       126 l~p~ni~~~~~~~~~l~d~g~~~~~~~~~~--------------------------------------------------  155 (284)
T cd07836         126 LKPQNLLINKRGELKLADFGLARAFGIPVN--------------------------------------------------  155 (284)
T ss_pred             CCHHHEEECCCCcEEEeecchhhhhcCCcc--------------------------------------------------
Confidence            999999999999999999999853321100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHh
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl  266 (886)
                                                              ......++.+|+|||.+.+. .++.++|||||||++|||+
T Consensus       156 ----------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~  195 (284)
T cd07836         156 ----------------------------------------TFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMI  195 (284)
T ss_pred             ----------------------------------------ccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                    00012568889999998764 4789999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhcc-------------------CCCC--------hhhhccChhhHHHHHHccCCCCCCCCCH
Q 002736          267 C---PFSTGEEKTRTMSSLRH-------------------RVLP--------PQLLLKFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~-------------------~~~~--------~~~~~~~~~~~~li~~~L~~dP~~Rps~  316 (886)
                      +   ||............+..                   ...+        ......++.+.+++.+||+.||.+||++
T Consensus       196 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~  275 (284)
T cd07836         196 TGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISA  275 (284)
T ss_pred             hCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCH
Confidence            9   66544322221111100                   0000        0112335677899999999999999999


Q ss_pred             HHHhcCCCC
Q 002736          317 GELLQSEFL  325 (886)
Q Consensus       317 ~eil~h~~~  325 (886)
                      .++++||||
T Consensus       276 ~~~l~~~~f  284 (284)
T cd07836         276 HDALQHPWF  284 (284)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=8.1e-26  Score=241.32  Aligned_cols=206  Identities=16%  Similarity=0.128  Sum_probs=156.2

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+.+.+|++++..++ .+.+ .....++++||| .|++|.+++.+. ..+++..++.++.||+.||.|||++||+|+|
T Consensus        55 i~~l~~l~h~~i~~~~~-~~~~-~~~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~al~~LH~~~i~H~d  131 (264)
T cd06653          55 IQLLKNLRHDRIVQYYG-CLRD-PEEKKLSIFVEYMPGGSIKDQLKAY-GALTENVTRRYTRQILQGVSYLHSNMIVHRD  131 (264)
T ss_pred             HHHHHHcCCCCcceEEE-EEEc-CCCCEEEEEEEeCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCEecCC
Confidence            33555667888887776 3322 234567889999 788999998654 4578999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++++|||+++........                               .                 
T Consensus       132 l~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~-------------------------------~-----------------  163 (264)
T cd06653         132 IKGANILRDSAGNVKLGDFGASKRIQTICMS-------------------------------G-----------------  163 (264)
T ss_pred             CCHHHEEEcCCCCEEECcccccccccccccc-------------------------------C-----------------
Confidence            9999999999999999999998643211000                               0                 


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                             .......|+..|+|||.+.+..++.++|||||||++|||++
T Consensus       164 ---------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  204 (264)
T cd06653         164 ---------------------------------------TGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLT  204 (264)
T ss_pred             ---------------------------------------ccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHh
Confidence                                                   00011357888999999988889999999999999999998


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||..................+..+....+.+.+++.+||. +|..||++.+++.|||.
T Consensus       205 g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         205 EKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             CCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence               7755444444443333333333344456778899999999 57999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.93  E-value=7.4e-26  Score=251.27  Aligned_cols=206  Identities=17%  Similarity=0.220  Sum_probs=152.3

Q ss_pred             eecccccccCCCCCCcccccc--ccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENE--AAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+....|++++.....+..++  .....+++++||.|++|.+++..  ..+++.+++.++.||+.||.|||++||+||||
T Consensus        67 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~--~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dl  144 (343)
T cd07851          67 LLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKC--QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDL  144 (343)
T ss_pred             HHHhccCCCHHHHHHHhhccccccccccEEEEEecCCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            344456777766554121111  12345899999999999999965  46899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++......                                                     
T Consensus       145 kp~Nill~~~~~~kL~dfg~~~~~~~~-----------------------------------------------------  171 (343)
T cd07851         145 KPSNIAVNEDCELKILDFGLARHTDDE-----------------------------------------------------  171 (343)
T ss_pred             CHHHeEECCCCCEEEcccccccccccc-----------------------------------------------------
Confidence            999999999999999999998533111                                                     


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              .....++.+|+|||.+.+ ..++.++|||||||++|||++
T Consensus       172 ----------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~ellt  211 (343)
T cd07851         172 ----------------------------------------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT  211 (343)
T ss_pred             ----------------------------------------ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHh
Confidence                                                    001256888999999866 358899999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccC-C----------------------------CChhhhccChhhHHHHHHccCCCCCCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHR-V----------------------------LPPQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~-~----------------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps  315 (886)
                         ||............+... .                            +.......++.+.+|+.+||..+|.+|||
T Consensus       212 g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt  291 (343)
T cd07851         212 GKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRIT  291 (343)
T ss_pred             CCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCC
Confidence               665443322211111100 0                            00111234567889999999999999999


Q ss_pred             HHHHhcCCCCCCCcCc
Q 002736          316 MGELLQSEFLNEPRDS  331 (886)
Q Consensus       316 ~~eil~h~~~~~~~~~  331 (886)
                      +.++++||||.....+
T Consensus       292 ~~ell~h~~~~~~~~~  307 (343)
T cd07851         292 AAEALAHPYLAEYHDP  307 (343)
T ss_pred             HHHHhcCCCccccCCC
Confidence            9999999999876444

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=242.67  Aligned_cols=245  Identities=16%  Similarity=0.204  Sum_probs=200.1

Q ss_pred             cCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCC---------------------------------------------
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSR---------------------------------------------  649 (886)
Q Consensus       615 ~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t---------------------------------------------  649 (886)
                      +|.+.|+++.|++ +|.+||+|+.||.|+||.+..                                             
T Consensus       265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            6999999999999 899999999999999998754                                             


Q ss_pred             ---------------ceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEE
Q 002736          650 ---------------SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCC  714 (886)
Q Consensus       650 ---------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~  714 (886)
                                     .+++++|.+|.+.|.++.|+  ..++|+++|.|.+|+||++..       ..++..+.|...|+|
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~-------~~CL~~F~HndfVTc  414 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGR-------KECLKVFSHNDFVTC  414 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCC-------cceeeEEecCCeeEE
Confidence                           01234468999999999999  578999999999999999998       899999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCc
Q 002736          715 VQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPL  793 (886)
Q Consensus       715 v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  793 (886)
                      |+|+|-+.++|++||-||.|+||++...+  +..+..-..-|++++|. +|+..+.|+.+|.+++|++...+...... +
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~-I  491 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH-I  491 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee-E
Confidence            99999989999999999999999998776  44444444789999996 99999999999999999998764211000 0


Q ss_pred             eE----eecCCCceeEEEEecCCC-EEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCC
Q 002736          794 HS----FTGHTNVKNFVGLSVWDG-YVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSS  868 (886)
Q Consensus       794 ~~----~~~h~~~v~~v~~sp~g~-~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~  868 (886)
                      ..    -..|. .|+++.|.|... .|++.|.|..|+|||....+.+..|+-.+.           ...-....|+.||.
T Consensus       492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-----------~~SQ~~Asfs~Dgk  559 (712)
T KOG0283|consen  492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-----------TSSQISASFSSDGK  559 (712)
T ss_pred             eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-----------CCcceeeeEccCCC
Confidence            00    01123 799999998654 688889999999999988777766652211           11134567889999


Q ss_pred             cEEEEEeCCCCEEEEEe
Q 002736          869 NTLVAANSSGNIKILEM  885 (886)
Q Consensus       869 ~~l~s~~~dg~I~iw~l  885 (886)
                       +|++|+.|..|+||++
T Consensus       560 -~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  560 -HIVSASEDSWVYIWKN  575 (712)
T ss_pred             -EEEEeecCceEEEEeC
Confidence             9999999999999986

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.2e-25  Score=239.66  Aligned_cols=197  Identities=15%  Similarity=0.132  Sum_probs=150.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..+. ++.   ..+.++++||| .|++|.+++... ...+++..+..++.||+.||.|||++||+||||
T Consensus        54 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl  129 (261)
T cd05068          54 IMKKLRHPKLIQLYA-VCT---LEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDL  129 (261)
T ss_pred             HHHHCCCCCccceeE-EEe---cCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence            444557888887666 443   34678899999 599999999654 356899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||+++........                                                  
T Consensus       130 ~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~--------------------------------------------------  159 (261)
T cd05068         130 AARNVLVGENNICKVADFGLARVIKEDIYE--------------------------------------------------  159 (261)
T ss_pred             CcceEEEcCCCCEEECCcceEEEccCCccc--------------------------------------------------
Confidence            999999999999999999998654311000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             .......+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       160 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~  200 (261)
T cd05068         160 ---------------------------------------AREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTY  200 (261)
T ss_pred             ---------------------------------------ccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhc
Confidence                                                   0000012346999999988889999999999999999997 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||.... .......+......+.....+..+.+++.+||..+|.+||++.++++
T Consensus       201 g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         201 GRMPYPGMT-NAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             CCCCCCCCC-HHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence               664433 33333333333333334456678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.93  E-value=8.8e-26  Score=243.30  Aligned_cols=197  Identities=17%  Similarity=0.143  Sum_probs=149.0

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC--------------CCcChHHHHHHHHHHHHHHH
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK--------------RSVDVYECLHIFRQIVEIVY   96 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~--------------~~l~~~~~~~i~~qi~~~l~   96 (886)
                      +....|++++.+++ ++.   ..+.++++||| .+++|.+++....              ..+++..++.++.||+.||.
T Consensus        61 l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~  136 (280)
T cd05092          61 LTVLQHQHIVRFYG-VCT---EGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMV  136 (280)
T ss_pred             HhcCCCCCCceEEE-EEe---cCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHH
Confidence            34457888888766 443   34668899998 7899999985432              24789999999999999999


Q ss_pred             hhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccC
Q 002736           97 AAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTA  176 (886)
Q Consensus        97 ~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  176 (886)
                      |||++||+||||||+|||++.++.+|++|||++..........                                     
T Consensus       137 ~LH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~-------------------------------------  179 (280)
T cd05092         137 YLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYR-------------------------------------  179 (280)
T ss_pred             HHHHCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceee-------------------------------------
Confidence            9999999999999999999999999999999985331110000                                     


Q ss_pred             CCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccc
Q 002736          177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIY  256 (886)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIw  256 (886)
                                                                         ......+++.|+|||.+.+..++.++|||
T Consensus       180 ---------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  208 (280)
T cd05092         180 ---------------------------------------------------VGGRTMLPIRWMPPESILYRKFTTESDIW  208 (280)
T ss_pred             ---------------------------------------------------cCCCccccccccCHHHhccCCcCchhhHH
Confidence                                                               00001346779999999988899999999


Q ss_pred             hHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          257 RLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       257 SlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ||||++|||++    ||........ .........+......++.+.+|+.+||..||.+||++.++++
T Consensus       209 slG~il~el~~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         209 SFGVVLWEIFTYGKQPWYQLSNTEA-IECITQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             HHHHHHHHHHcCCCCCCccCCHHHH-HHHHHcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            99999999986    5644433333 3333333333333456678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.93  E-value=1e-25  Score=240.00  Aligned_cols=197  Identities=15%  Similarity=0.140  Sum_probs=150.8

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ .+.   ..+.++++||| .+++|.+++.+. ...++...++.++.||+.||.|||+.||+||||
T Consensus        54 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl  129 (261)
T cd05072          54 LMKTLQHDKLVRLYA-VVT---KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDL  129 (261)
T ss_pred             HHHhCCCCCeeeEEE-EEc---CCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecccc
Confidence            344567888888776 332   34567899998 789999999543 356789999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++..+.++++|||++.........                                                  
T Consensus       130 ~p~nili~~~~~~~l~dfg~~~~~~~~~~~--------------------------------------------------  159 (261)
T cd05072         130 RAANVLVSESLMCKIADFGLARVIEDNEYT--------------------------------------------------  159 (261)
T ss_pred             chhhEEecCCCcEEECCCccceecCCCcee--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       160 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~  200 (261)
T cd05072         160 ---------------------------------------AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTY  200 (261)
T ss_pred             ---------------------------------------ccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHcc
Confidence                                                   0000134667999999988889999999999999999996 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||... ........+......+.....+..+.+++.+||..+|++||+++++++
T Consensus       201 g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         201 GKIPYPGM-SNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             CCCCCCCC-CHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence               55433 333344444444344444455677889999999999999999999865

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.93  E-value=1.6e-25  Score=237.97  Aligned_cols=202  Identities=16%  Similarity=0.100  Sum_probs=152.5

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      +...+...+|++++..++ .+.+    ..++++||| .+++|.+++.+.. ..+++..+..++.||+.||.|||++||+|
T Consensus        46 e~~~l~~l~h~~iv~~~~-~~~~----~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H  120 (257)
T cd05040          46 EAAIMHSLDHENLIRLYG-VVLT----HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIH  120 (257)
T ss_pred             HHHHHhhcCCCCccceeE-EEcC----CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            344566678888888766 4433    678899999 7899999996644 57899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      +||||+||+++.++.+|++|||++.........-.                                             
T Consensus       121 ~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~---------------------------------------------  155 (257)
T cd05040         121 RDLAARNILLASDDKVKIGDFGLMRALPQNEDHYV---------------------------------------------  155 (257)
T ss_pred             cccCcccEEEecCCEEEecccccccccccccccee---------------------------------------------
Confidence            99999999999999999999999865432100000                                             


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                ......++..|+|||.+.+..++.++|||||||++|||
T Consensus       156 ------------------------------------------~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el  193 (257)
T cd05040         156 ------------------------------------------MEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEM  193 (257)
T ss_pred             ------------------------------------------cccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHH
Confidence                                                      00011456779999999888899999999999999999


Q ss_pred             hc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          266 FC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       266 l~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ++    ||...................+.....++.+.+++.+||..+|++||++.++++
T Consensus       194 ~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         194 FTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             HhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHH
Confidence            86    664443333222222222222233345577889999999999999999999876

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.93  E-value=9.3e-26  Score=246.00  Aligned_cols=190  Identities=15%  Similarity=0.159  Sum_probs=144.4

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC---------------CCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK---------------RSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~---------------~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      +|++++..++ ++.   ..+.++++||| .+++|.++|.+..               ..+++..++.++.||+.||+|||
T Consensus        66 ~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH  141 (303)
T cd05088          66 HHPNIINLLG-ACE---HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS  141 (303)
T ss_pred             CCCCcceEEE-EEC---CCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence            6888887766 443   34568889999 7899999995421               25789999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.+|++|||++.......                                           
T Consensus       142 ~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~-------------------------------------------  178 (303)
T cd05088         142 QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV-------------------------------------------  178 (303)
T ss_pred             hCCccccccchheEEecCCCcEEeCccccCcccchhh-------------------------------------------
Confidence            9999999999999999999999999999884211000                                           


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       179 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  210 (303)
T cd05088         179 ------------------------------------------------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYG  210 (303)
T ss_pred             ------------------------------------------------hcccCCCcccccCHHHHhccCCcccccchhhh
Confidence                                                            00000234569999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||...... .....+.....++.+...++.+.+|+.+||..+|.+||++.++++
T Consensus       211 ~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  275 (303)
T cd05088         211 VLLWEIVSLGGTPYCGMTCA-ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  275 (303)
T ss_pred             hHHHHHHhcCCCCcccCChH-HHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            99999985    66433332 222333333233333445678889999999999999999999987

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.93  E-value=8.4e-26  Score=239.92  Aligned_cols=201  Identities=17%  Similarity=0.224  Sum_probs=155.7

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|++++..++ .+.   ..+.+++++|| .+++|.+++.+. ...+++..++.++.||+.||.|||++||+|+|
T Consensus        51 ~~l~~~~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~d  126 (257)
T cd08225          51 ILLAKMKHPNIVTFFA-SFQ---ENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRD  126 (257)
T ss_pred             HHHHhCCCCChhhhhh-eec---cCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence            3455667888888776 443   34678899999 789999999553 33579999999999999999999999999999


Q ss_pred             cCCcceeeccCCc-eeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          108 VRPSCFVMSSFNH-VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       108 lkP~NIll~~~~~-vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      |||+||+++.++. +|++|||.+........                                                 
T Consensus       127 l~~~nil~~~~~~~~~l~d~~~~~~~~~~~~-------------------------------------------------  157 (257)
T cd08225         127 IKSQNIFLSKNGMVAKLGDFGIARQLNDSME-------------------------------------------------  157 (257)
T ss_pred             CCHHHEEEcCCCCeEEecccccchhccCCcc-------------------------------------------------
Confidence            9999999987754 69999998854321100                                                 


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ......|++.|+|||.+.+..++.++|+|||||++|||+
T Consensus       158 -----------------------------------------~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~  196 (257)
T cd08225         158 -----------------------------------------LAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELC  196 (257)
T ss_pred             -----------------------------------------cccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHH
Confidence                                                     000125788899999998888999999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      +   ||........... ......++........+.+++.+||..+|++|||+.++++||||
T Consensus       197 ~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         197 TLKHPFEGNNLHQLVLK-ICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             hCCCCCCCccHHHHHHH-HhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence            8   7755444333333 33333333334455678899999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=1.1e-25  Score=241.63  Aligned_cols=191  Identities=18%  Similarity=0.203  Sum_probs=142.4

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|+|++.+++ +|.+   .+..+++||| .+++|..++.+....+++..++.++.||+.||.|||++||+|||||
T Consensus        69 ~~~~l~h~niv~~~~-~~~~---~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlk  144 (274)
T cd05076          69 LMSQVSHIHLAFVHG-VCVR---GSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVC  144 (274)
T ss_pred             HHhcCCCCCeeeEEE-EEEe---CCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCC
Confidence            345567899988777 5543   4567889999 8899999997655678999999999999999999999999999999


Q ss_pred             CcceeeccCC-------ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          110 PSCFVMSSFN-------HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       110 P~NIll~~~~-------~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |+|||++..+       .+|++|||++......                                               
T Consensus       145 p~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~-----------------------------------------------  177 (274)
T cd05076         145 AKNILLARLGLAEGTSPFIKLSDPGVSFTALSR-----------------------------------------------  177 (274)
T ss_pred             cccEEEeccCcccCccceeeecCCccccccccc-----------------------------------------------
Confidence            9999997643       3788898876321000                                               


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVL  261 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvi  261 (886)
                                                                     ....++..|+|||.+.+ ..++.++|||||||+
T Consensus       178 -----------------------------------------------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~  210 (274)
T cd05076         178 -----------------------------------------------EERVERIPWIAPECVPGGNSLSTAADKWSFGTT  210 (274)
T ss_pred             -----------------------------------------------cccccCCcccCchhhcCCCCCCcHHHHHHHHHH
Confidence                                                           00145677999999876 458999999999999


Q ss_pred             HHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       262 l~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      +|||+.    ||........ ..........+  ....+.+.+++.+||..+|.+||++.+++++
T Consensus       211 l~el~~~g~~p~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         211 LLEICFDGEVPLKERTPSEK-ERFYEKKHRLP--EPSCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             HHHHHhCCCCCccccChHHH-HHHHHhccCCC--CCCChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence            999963    6644332221 11111111111  1234678899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.6e-25  Score=240.07  Aligned_cols=201  Identities=14%  Similarity=0.133  Sum_probs=150.9

Q ss_pred             eecccccccCCCCCCcccccccc---CCceEEEEee-CCcchhhhhcC-----CCCCcChHHHHHHHHHHHHHHHhhccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAA---IDPFVHAIEW-GDVSLRQWLDK-----PKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~e~-~g~sL~~~l~~-----~~~~l~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      .+...+|++++..++ ++.....   ....+++||| .+++|..++..     ....+++..++.++.||+.||.|||++
T Consensus        54 ~l~~l~h~~iv~~~~-~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~  132 (273)
T cd05035          54 CMKDFDHPNVMKLIG-VCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR  132 (273)
T ss_pred             HHHhCCCCCeeeEEe-eeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            445567888888666 4433221   2346888888 88999998832     124689999999999999999999999


Q ss_pred             CeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcc
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  181 (886)
                      ||+||||||+||+++.++.+|++|||+++.........                                          
T Consensus       133 ~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~------------------------------------------  170 (273)
T cd05035         133 NFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYR------------------------------------------  170 (273)
T ss_pred             CeeccccchheEEECCCCeEEECCccceeecccccccc------------------------------------------
Confidence            99999999999999999999999999985432110000                                          


Q ss_pred             ccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHH
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvi  261 (886)
                                                                    ......++..|+|||.+.+..++.++|||||||+
T Consensus       171 ----------------------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~i  204 (273)
T cd05035         171 ----------------------------------------------QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVT  204 (273)
T ss_pred             ----------------------------------------------ccccccCCccccCHhhcccCCCCcccchHHHHHH
Confidence                                                          0000123567999999988889999999999999


Q ss_pred             HHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       262 l~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +|||++    ||.. .........+.....+..+...++.+.+++.+||..||.+||++.|+++
T Consensus       205 l~el~~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~  267 (273)
T cd05035         205 MWEIATRGQTPYPG-VENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLRE  267 (273)
T ss_pred             HHHHHhCCCCCCCC-CCHHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            999986    5543 3333444444444444445566788899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.3e-25  Score=238.80  Aligned_cols=197  Identities=18%  Similarity=0.186  Sum_probs=150.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.    .+.++++||| .+++|.++|.+. ..+++..++.++.||+.||.|||++||+|+|||
T Consensus        49 ~l~~l~h~~iv~~~~-~~~----~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~  122 (257)
T cd05060          49 VMAQLDHPCIVRLIG-VCK----GEPLMLVMELAPLGPLLKYLKKR-REIPVSDLKELAHQVAMGMAYLESKHFVHRDLA  122 (257)
T ss_pred             HHHhcCCCCeeeEEE-EEc----CCceEEEEEeCCCCcHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcc
Confidence            445567888888766 443    3457889999 788999999665 378999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.+|++|||+++........                                               +.  
T Consensus       123 p~nili~~~~~~kl~df~~~~~~~~~~~~-----------------------------------------------~~--  153 (257)
T cd05060         123 ARNVLLVNRHQAKISDFGMSRALGAGSDY-----------------------------------------------YR--  153 (257)
T ss_pred             cceEEEcCCCcEEeccccccceeecCCcc-----------------------------------------------cc--
Confidence            99999999999999999998544211000                                               00  


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       154 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g  195 (257)
T cd05060         154 --------------------------------------ATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYG  195 (257)
T ss_pred             --------------------------------------cccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCC
Confidence                                                  0000123456999999988889999999999999999996  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||.... .......+......+.+...++.+.+++.+||..+|.+||++.++++
T Consensus       196 ~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         196 AKPYGEMK-GAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             CCCcccCC-HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence              554333 33333444443333444456678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=7.6e-26  Score=244.34  Aligned_cols=202  Identities=17%  Similarity=0.153  Sum_probs=154.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrD  107 (886)
                      ..+...+|++++..++ .+.+   .+.++++||| .+++|.+++.+. +.+++..+..++.||+.||.|||+ .||+|||
T Consensus        55 ~~l~~l~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~d  129 (284)
T cd06620          55 QIMHECRSPYIVSFYG-AFLN---ENNICMCMEFMDCGSLDRIYKKG-GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRD  129 (284)
T ss_pred             HHHHHcCCCCcceEee-eEec---CCEEEEEEecCCCCCHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccC
Confidence            3445567888888777 3433   3678999999 788999988654 568999999999999999999997 6999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.++++|||++.......                                                   
T Consensus       130 l~p~nil~~~~~~~~l~d~gl~~~~~~~~---------------------------------------------------  158 (284)
T cd06620         130 IKPSNILVNSRGQIKLCDFGVSGELINSI---------------------------------------------------  158 (284)
T ss_pred             CCHHHEEECCCCcEEEccCCcccchhhhc---------------------------------------------------
Confidence            99999999999999999999874321000                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                               ....+|+..|+|||.+.+..++.++|||||||++|||++
T Consensus       159 -----------------------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~t  197 (284)
T cd06620         159 -----------------------------------------ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELAL  197 (284)
T ss_pred             -----------------------------------------cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHh
Confidence                                                     001267888999999988889999999999999999998


Q ss_pred             ---CCCCCchh----------hHHhHhhccCCCChhh-hccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 ---PFSTGEEK----------TRTMSSLRHRVLPPQL-LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 ---pf~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                         ||......          ......+.....+... ...++.+.+|+.+||.+||.+||++.|+++|+||...
T Consensus       198 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~  272 (284)
T cd06620         198 GKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQA  272 (284)
T ss_pred             CCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence               77543321          0111111111112111 1245678899999999999999999999999988654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.93  E-value=8.4e-26  Score=241.33  Aligned_cols=204  Identities=15%  Similarity=0.201  Sum_probs=153.4

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC--CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP--KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~--~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      +....|++++..++ .+.   ..+.++++||+ .|++|.+++...  ...+++..+..++.||+.||.|||++||+|+||
T Consensus        53 l~~l~~~~i~~~~~-~~~---~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l  128 (267)
T cd06610          53 MSQCNHPNVVKYYT-SFV---VGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDI  128 (267)
T ss_pred             HHhcCCCCEEEEEE-EEe---eCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            34457788777665 333   34568889999 789999999543  246899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++..........                                                 
T Consensus       129 ~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~-------------------------------------------------  159 (267)
T cd06610         129 KAGNILLGEDGSVKIADFGVSASLADGGDRT-------------------------------------------------  159 (267)
T ss_pred             CHHhEEEcCCCCEEEcccchHHHhccCcccc-------------------------------------------------
Confidence            9999999999999999999985442211000                                                 


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~  267 (886)
                                                           ........|+..|+|||.+... .++.++|+|||||++|||++
T Consensus       160 -------------------------------------~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~  202 (267)
T cd06610         160 -------------------------------------RKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELAT  202 (267)
T ss_pred             -------------------------------------ccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHh
Confidence                                                 0000113678899999998876 68999999999999999999


Q ss_pred             ---CCCCCchhhHHhHhhccCCC--Chh--hhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVL--PPQ--LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                         ||............+.....  +..  ....++.+.+++.+||..||.+||++.++++||||
T Consensus       203 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         203 GAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             CCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence               77554443333333332111  111  12345677899999999999999999999999997

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.93  E-value=7.7e-27  Score=231.76  Aligned_cols=201  Identities=11%  Similarity=0.124  Sum_probs=156.1

Q ss_pred             cccCCCCCCccccccccCCceEEEEeeC-CcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceee
Q 002736           37 HLRNQGGLSGVCENEAAIDPFVHAIEWG-DVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVM  115 (886)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~i~~e~~-g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll  115 (886)
                      .+-++.+|| .+.   ...-++|+|||| .|++.+.++.+...+++.++..+++..+.||+|||...-||||||..||||
T Consensus        87 S~yVVKYYG-SYF---K~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILL  162 (502)
T KOG0574|consen   87 SKYVVKYYG-SYF---KHSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILL  162 (502)
T ss_pred             Cchhhhhhh-hhc---cCCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEE
Confidence            445566666 332   234578899995 489999998777899999999999999999999999999999999999999


Q ss_pred             ccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCc
Q 002736          116 SSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGT  195 (886)
Q Consensus       116 ~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  195 (886)
                      +-+|+.|++|||++-.+...     +                                                      
T Consensus       163 NT~G~AKLADFGVAGQLTDT-----M------------------------------------------------------  183 (502)
T KOG0574|consen  163 NTDGIAKLADFGVAGQLTDT-----M------------------------------------------------------  183 (502)
T ss_pred             cccchhhhhhccccchhhhh-----H------------------------------------------------------
Confidence            99999999999998433100     0                                                      


Q ss_pred             ccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--CCCCCc
Q 002736          196 HVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGE  273 (886)
Q Consensus       196 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--pf~~~~  273 (886)
                                                     .+..+++|||.|||||++..-.|++++||||||++..||.-  |.+..-
T Consensus       184 -------------------------------AKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDI  232 (502)
T KOG0574|consen  184 -------------------------------AKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDI  232 (502)
T ss_pred             -------------------------------HhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccc
Confidence                                           02234599999999999999889999999999999999998  444443


Q ss_pred             hhhHHhHhhccCCCChh--hhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          274 EKTRTMSSLRHRVLPPQ--LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       274 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                      ...+++..+...+.|.+  +...+.++.+|+..||.+.|++|-||-++++|||++..+..
T Consensus       233 HPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA~g~  292 (502)
T KOG0574|consen  233 HPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIKNAPGC  292 (502)
T ss_pred             cccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCCCcc
Confidence            33333333332222211  22234567799999999999999999999999999976544

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.93  E-value=1.6e-25  Score=238.40  Aligned_cols=195  Identities=17%  Similarity=0.172  Sum_probs=151.1

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      +...+|++++.+++ ++.   ..+.++++||| .+++|.+++.+. ...+++..++.++.||+.||.|||++||+|+|||
T Consensus        56 l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~  131 (261)
T cd05148          56 LKRLRHKHLISLFA-VCS---VGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLA  131 (261)
T ss_pred             HhcCCCcchhheee-eEe---cCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccC
Confidence            44557888888776 443   34678999999 788999999653 3568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||.+.........                                                   
T Consensus       132 ~~nilv~~~~~~kl~d~g~~~~~~~~~~~---------------------------------------------------  160 (261)
T cd05148         132 ARNILVGEDLVCKVADFGLARLIKEDVYL---------------------------------------------------  160 (261)
T ss_pred             cceEEEcCCceEEEccccchhhcCCcccc---------------------------------------------------
Confidence            99999999999999999998543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                             .....++..|+|||.+.+..++.++|||||||++|+|++  
T Consensus       161 ---------------------------------------~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g  201 (261)
T cd05148         161 ---------------------------------------SSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYG  201 (261)
T ss_pred             ---------------------------------------ccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCC
Confidence                                                   000134567999999988889999999999999999996  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||.... .......+.....++.....++.+.+++.+||..+|.+|||+.++++
T Consensus       202 ~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         202 QVPYPGMN-NHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             CCCCCcCC-HHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence              564433 33333333333334444566778889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.93  E-value=1.1e-25  Score=244.26  Aligned_cols=204  Identities=15%  Similarity=0.180  Sum_probs=155.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+....|++++..++ .+.+   .+.+++++|| .|++|.+++.+  ..+++.+++.++.||+.||.|||++||+|+|||
T Consensus        69 ~l~~l~hp~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~  142 (293)
T cd06647          69 VMRENKHPNIVNYLD-SYLV---GDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK  142 (293)
T ss_pred             HHhhcCCCCeeehhh-eeee---CCcEEEEEecCCCCcHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCC
Confidence            344567888877666 4433   3567889998 78999999965  357899999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++........                                                    
T Consensus       143 p~Nili~~~~~~kL~dfg~~~~~~~~~~----------------------------------------------------  170 (293)
T cd06647         143 SDNILLGMDGSVKLTDFGFCAQITPEQS----------------------------------------------------  170 (293)
T ss_pred             HHHEEEcCCCCEEEccCcceeccccccc----------------------------------------------------
Confidence            9999999999999999998743321100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......|++.|+|||.+.+..++.++|||||||++|||++  
T Consensus       171 --------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~  212 (293)
T cd06647         171 --------------------------------------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGE  212 (293)
T ss_pred             --------------------------------------ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                  0011257888999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCC-CChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcC
Q 002736          268 -PFSTGEEKTRTMSSLRHRV-LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                       ||................. ..+......+.+.+++.+||..+|.+||++.+++.|+||.....
T Consensus       213 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~~  277 (293)
T cd06647         213 PPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKIAKP  277 (293)
T ss_pred             CCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcCcc
Confidence             7755443322221111111 11112234566889999999999999999999999999987653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.93  E-value=2.6e-26  Score=223.58  Aligned_cols=205  Identities=17%  Similarity=0.173  Sum_probs=143.1

Q ss_pred             cccccCCCCCCcccccc-c-cCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccC--eeec
Q 002736           35 GDHLRNQGGLSGVCENE-A-AIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQG--IVVH  106 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~-~-~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~g--iiHr  106 (886)
                      .+|+++++.+. .+..+ . .....|+++.| ..|||.+.+..   .+..+++.++++||.+|++||.+||+..  .+||
T Consensus        75 f~s~~vl~l~d-h~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~  153 (302)
T KOG2345|consen   75 FNSPNVLRLVD-HQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHR  153 (302)
T ss_pred             hCCcchHHHHH-HHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCccccc
Confidence            57788888776 33322 2 23335666666 88999998842   3347899999999999999999999999  9999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||.|||++.++.++++|||.+......-..                       ++.                      
T Consensus       154 DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~-----------------------~~~----------------------  188 (302)
T KOG2345|consen  154 DIKPANILLSDSGLPVLMDLGSATQAPIQIEG-----------------------SRQ----------------------  188 (302)
T ss_pred             CCCcceeEecCCCceEEEeccCccccceEeec-----------------------hHH----------------------
Confidence            99999999999999999999998653211000                       000                      


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC---CCCCcccccchHHHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG---APVSCASDIYRLGVLLF  263 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~---~~~s~~sDIwSlGvil~  263 (886)
                               ...+.|..                           .-.-|..|+|||.+.-   ...+.++|||||||+||
T Consensus       189 ---------a~~lQe~a---------------------------~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLY  232 (302)
T KOG2345|consen  189 ---------ALRLQEWA---------------------------EERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLY  232 (302)
T ss_pred             ---------HHHHHHHH---------------------------HHhCCCcccCchheecccCcccccccchhhhhHHHH
Confidence                     00000000                           0133677999999864   33788999999999999


Q ss_pred             HHhc---CCCCCchh--hHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          264 ELFC---PFSTGEEK--TRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       264 eLl~---pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +|+.   ||......  ..+..........|.....+..+..+|.+||+.||.+||++.+++.
T Consensus       233 a~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~  295 (302)
T KOG2345|consen  233 AMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLS  295 (302)
T ss_pred             HHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHH
Confidence            9997   87433221  1112222222223333335667789999999999999999999886

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.93  E-value=9.9e-26  Score=244.71  Aligned_cols=206  Identities=18%  Similarity=0.228  Sum_probs=151.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..++ ++.   ..+.++++|||.+++|.+++... ...+++..+..++.||+.||.|||++||+||||
T Consensus        53 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl  128 (294)
T PLN00009         53 SLLKEMQHGNIVRLQD-VVH---SEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDL  128 (294)
T ss_pred             HHHHhccCCCEeeEEE-EEe---cCCeEEEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCC
Confidence            3445567888888777 333   34678999999888999888543 234688899999999999999999999999999


Q ss_pred             CCcceeecc-CCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          109 RPSCFVMSS-FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       109 kP~NIll~~-~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      ||+||+++. .+.+|++|||++...+....                                                  
T Consensus       129 ~p~nill~~~~~~~kl~dfg~~~~~~~~~~--------------------------------------------------  158 (294)
T PLN00009        129 KPQNLLIDRRTNALKLADFGLARAFGIPVR--------------------------------------------------  158 (294)
T ss_pred             CcceEEEECCCCEEEEcccccccccCCCcc--------------------------------------------------
Confidence            999999985 45799999999854322100                                                  


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHh
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl  266 (886)
                                                              ......+++.|+|||.+.+. .++.++|||||||++|+|+
T Consensus       159 ----------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~  198 (294)
T PLN00009        159 ----------------------------------------TFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMV  198 (294)
T ss_pred             ----------------------------------------ccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                    00112568889999998764 4899999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhcc--CC---------------------CCh----hhhccChhhHHHHHHccCCCCCCCCCH
Q 002736          267 C---PFSTGEEKTRTMSSLRH--RV---------------------LPP----QLLLKFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~--~~---------------------~~~----~~~~~~~~~~~li~~~L~~dP~~Rps~  316 (886)
                      +   ||...............  ..                     .+.    ......+.+.+++.+||..+|.+||++
T Consensus       199 tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~  278 (294)
T PLN00009        199 NQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITA  278 (294)
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCH
Confidence            9   66544333222221110  00                     000    012345667899999999999999999


Q ss_pred             HHHhcCCCCCCCc
Q 002736          317 GELLQSEFLNEPR  329 (886)
Q Consensus       317 ~eil~h~~~~~~~  329 (886)
                      .++++||||....
T Consensus       279 ~~~l~~~~~~~~~  291 (294)
T PLN00009        279 RAALEHEYFKDLG  291 (294)
T ss_pred             HHHhcCchHhHHh
Confidence            9999999998653

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.6e-26  Score=268.63  Aligned_cols=201  Identities=16%  Similarity=0.216  Sum_probs=164.8

Q ss_pred             cCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC------CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP------KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~------~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .+.+..++.+|+|++.+.| +|.+   ....+|++|| .||+|..||++.      ...++..+.+.++.||+.|++||+
T Consensus       744 ~Ea~~m~~f~HpNiv~liG-v~l~---~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe  819 (1025)
T KOG1095|consen  744 KEALLMSKFDHPNIVSLIG-VCLD---SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE  819 (1025)
T ss_pred             HHHHHHhcCCCcceeeEEE-eecC---CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH
Confidence            5567788899999999877 8986   4667778888 999999999876      677899999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++++|||||-..|.||+....|||+|||+|+++-..+...    +                                   
T Consensus       820 ~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr----~-----------------------------------  860 (1025)
T KOG1095|consen  820 SKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYR----K-----------------------------------  860 (1025)
T ss_pred             hCCCcCcchhhhheeecccCcEEEcccchhHhhhhchhee----c-----------------------------------
Confidence            9999999999999999999999999999998542221100    0                                   


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                       ....+-...|||||.+....+|.++||||||
T Consensus       861 -------------------------------------------------~~~a~lPvkWm~PEsl~d~iFtskSDvWsFG  891 (1025)
T KOG1095|consen  861 -------------------------------------------------HGEAMLPVKWMPPESLKDGIFTSKSDVWSFG  891 (1025)
T ss_pred             -------------------------------------------------cCccccceecCCHHHHhhcccccccchhhhH
Confidence                                                             0000223459999999999999999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhH-hhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMS-SLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |+|||+|+    || +......++. .+... .-+.+..++..+.+++..||+.+|++||++..|++
T Consensus       892 VllWEifslG~~PY-~~~~n~~v~~~~~~gg-RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  892 VLLWEIFSLGATPY-PSRSNFEVLLDVLEGG-RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             HHHHHHHhCCCCCC-CCcchHHHHHHHHhCC-ccCCCCCCChHHHHHHHHHccCChhhCccHHHHHh
Confidence            99999999    66 4555555555 44444 55566678888899999999999999999999987

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.93  E-value=1.6e-25  Score=236.96  Aligned_cols=197  Identities=16%  Similarity=0.162  Sum_probs=151.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+....|++++..++ +|.+   .+.++++||| .|++|.+++......+++..++.++.||+.+|.|+|++|++|||||
T Consensus        45 ~l~~l~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~  120 (250)
T cd05085          45 ILKQYDHPNIVKLIG-VCTQ---RQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLA  120 (250)
T ss_pred             HHHhCCCCCcCeEEE-EEec---CCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccC
Confidence            445567888888776 5543   4568899999 8899999996655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++.........                                                   
T Consensus       121 p~nili~~~~~~~l~d~g~~~~~~~~~~~---------------------------------------------------  149 (250)
T cd05085         121 ARNCLVGENNVLKISDFGMSRQEDDGIYS---------------------------------------------------  149 (250)
T ss_pred             hheEEEcCCCeEEECCCccceeccccccc---------------------------------------------------
Confidence            99999999999999999988432110000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       150 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g  191 (250)
T cd05085         150 --------------------------------------SSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLG  191 (250)
T ss_pred             --------------------------------------cCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCC
Confidence                                                  0000123456999999988889999999999999999997  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||..... ......+............++.+.+++.+||..+|.+||++.++++
T Consensus       192 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         192 VCPYPGMTN-QQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             CCCCCCCCH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence              6654433 3333344433333334456678899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.3e-25  Score=241.53  Aligned_cols=199  Identities=13%  Similarity=0.089  Sum_probs=151.4

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      ..+...+|++++..++ ++.   ....++++||| .+++|.++|...         ...+++..++.++.||+.||.|||
T Consensus        61 ~~l~~~~~~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH  136 (277)
T cd05032          61 SVMKEFNCHHVVRLLG-VVS---TGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA  136 (277)
T ss_pred             HHHHhCCCCceeEEEE-EEc---CCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3445567888888776 443   23678899999 689999999532         124678899999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      +.||+||||||+||+++.++.+|++|||+++.........                                        
T Consensus       137 ~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~----------------------------------------  176 (277)
T cd05032         137 AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYR----------------------------------------  176 (277)
T ss_pred             hCCccccccChheEEEcCCCCEEECCcccchhhccCcccc----------------------------------------
Confidence            9999999999999999999999999999985432110000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       177 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  208 (277)
T cd05032         177 ------------------------------------------------KGGKGLLPVRWMAPESLKDGVFTTKSDVWSFG  208 (277)
T ss_pred             ------------------------------------------------cCCCCCccccccCHHHHhcCCCCcccchHHHH
Confidence                                                            00011456779999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||... ........+.....++.+...++.+.+++.+||..+|.+|||+.+++.
T Consensus       209 ~il~el~t~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         209 VVLWEMATLAEQPYQGL-SNEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             HHHHHhhccCCCCCccC-CHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            99999996    55433 333344444444344444455678889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=5.2e-26  Score=250.96  Aligned_cols=210  Identities=17%  Similarity=0.129  Sum_probs=149.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ ++..   .+.++++||| .+++|.+++.+. ...+++..++.++.||+.||+|||++||+||||
T Consensus        52 ~~~~l~h~niv~~~~-~~~~---~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDl  127 (328)
T cd08226          52 LSHFFRHPNIMTSWT-VFTT---GSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNI  127 (328)
T ss_pred             HHHhCCCCCcceEee-eEec---CCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            344567888888777 4443   4678889999 778999998653 245899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.++++||+.+.........                                   ...            
T Consensus       128 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~------------  160 (328)
T cd08226         128 KASHILISGDGLVSLSGLSHLYSLVRNGQK-----------------------------------AKV------------  160 (328)
T ss_pred             CHHHEEEeCCCcEEEechHHHhhhhccCcc-----------------------------------ccc------------
Confidence            999999999999999998765221100000                                   000            


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC--CCCcccccchHHHHHHHHh
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA--PVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~--~~s~~sDIwSlGvil~eLl  266 (886)
                               .                        ..   ......++..|+|||++.+.  .++.++|||||||++|||+
T Consensus       161 ---------~------------------------~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~  204 (328)
T cd08226         161 ---------V------------------------YD---FPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELA  204 (328)
T ss_pred             ---------c------------------------cc---ccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHH
Confidence                     0                        00   00001345679999999764  3789999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCC---------------------------------------------ChhhhccChhh
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVL---------------------------------------------PPQLLLKFPKE  298 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~  298 (886)
                      +   ||............+.....                                             .+......+.+
T Consensus       205 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (328)
T cd08226         205 TGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAF  284 (328)
T ss_pred             hCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHH
Confidence            8   66544333332222211110                                             01112234567


Q ss_pred             HHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          299 ASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       299 ~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      .+|+.+||..||.+|||+.|+|+||||..
T Consensus       285 ~~li~~~l~~dP~~Rpta~e~l~~~~~~~  313 (328)
T cd08226         285 QNLVELCLQQDPEKRPSASSLLSHAFFKQ  313 (328)
T ss_pred             HHHHHHHccCCcccCCCHHHHhhCHHHHH
Confidence            89999999999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.93  E-value=9e-26  Score=244.00  Aligned_cols=203  Identities=17%  Similarity=0.222  Sum_probs=156.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ .+..   .+..++++|| .|++|.+++......++..++..++.||+.||.|||+.||+|+||+
T Consensus        68 ~l~~l~~~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~  143 (286)
T cd06614          68 IMKDCKHPNIVDYYD-SYLV---GDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIK  143 (286)
T ss_pred             HHHHCCCCCeeEEEE-EEEE---CCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC
Confidence            445567888887666 3333   3678888998 7799999997654478999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++........                                                    
T Consensus       144 p~ni~i~~~~~~~l~d~~~~~~~~~~~~----------------------------------------------------  171 (286)
T cd06614         144 SDNILLSKDGSVKLADFGFAAQLTKEKS----------------------------------------------------  171 (286)
T ss_pred             hhhEEEcCCCCEEECccchhhhhccchh----------------------------------------------------
Confidence            9999999999999999998743211100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......+++.|+|||.+.+..++.++|||||||++|+|++  
T Consensus       172 --------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~  213 (286)
T cd06614         172 --------------------------------------KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGE  213 (286)
T ss_pred             --------------------------------------hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCC
Confidence                                                  0011256788999999988889999999999999999998  


Q ss_pred             -CCCCCchhhHHhHhhccCCCCh--hhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPP--QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                       ||......... ..+.....++  .....+..+.+++.+||..+|.+||++.++++|+||...
T Consensus       214 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~  276 (286)
T cd06614         214 PPYLREPPLRAL-FLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKA  276 (286)
T ss_pred             CCCCCCCHHHHH-HHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhhChHhhcc
Confidence             66544333222 2222222221  112245678899999999999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.93  E-value=1.5e-25  Score=239.98  Aligned_cols=197  Identities=19%  Similarity=0.161  Sum_probs=152.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+....|++++.+++ +|.+    ..++++||| .+++|.+++.+....+++..++.++.||+.||+|||++|++|+||
T Consensus        59 ~~l~~~~h~~i~~~~~-~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl  133 (270)
T cd05056          59 YIMRQFDHPHIVKLIG-VITE----NPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDI  133 (270)
T ss_pred             HHHHhCCCCchhceeE-EEcC----CCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccc
Confidence            3455567888888776 6653    456788888 789999999765567899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++..+.+|++|||+++........                                                  
T Consensus       134 ~p~nili~~~~~~~l~d~g~~~~~~~~~~~--------------------------------------------------  163 (270)
T cd05056         134 AARNVLVSSPDCVKLGDFGLSRYLEDESYY--------------------------------------------------  163 (270)
T ss_pred             ChheEEEecCCCeEEccCceeeecccccce--------------------------------------------------
Confidence            999999999999999999988533111000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ..+...++..|+|||.+....++.++|||||||++|||++ 
T Consensus       164 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~  204 (270)
T cd05056         164 ---------------------------------------KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILML  204 (270)
T ss_pred             ---------------------------------------ecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHc
Confidence                                                   0000123567999999988889999999999999999885 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||......... ..+.....++.+...++.+.+++.+||..+|.+||++.+++.
T Consensus       205 g~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~  260 (270)
T cd05056         205 GVKPFQGVKNNDVI-GRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKA  260 (270)
T ss_pred             CCCCCCCCCHHHHH-HHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence               77554443333 333333333444556678889999999999999999999876

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.93  E-value=1.4e-25  Score=249.21  Aligned_cols=206  Identities=16%  Similarity=0.222  Sum_probs=153.6

Q ss_pred             eeecccccccCCCCCCccccccc---cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           30 VELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ..+.+.+|++++..++ ++....   ....+|+++++.|++|.++++.  ..+++..++.++.||+.||.|||++||+||
T Consensus        68 ~~l~~l~h~~iv~~~~-~~~~~~~~~~~~~~~lv~~~~~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~  144 (345)
T cd07877          68 RLLKHMKHENVIGLLD-VFTPARSLEEFNDVYLVTHLMGADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHSADIIHR  144 (345)
T ss_pred             HHHHHcCCCcccceee-eeeecccccccccEEEEehhcccCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeec
Confidence            3455568888888766 443322   2345789999999999998854  358999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++.++.+|++|||++......                                                   
T Consensus       145 dlkp~NIll~~~~~~kl~dfg~~~~~~~~---------------------------------------------------  173 (345)
T cd07877         145 DLKPSNLAVNEDCELKILDFGLARHTDDE---------------------------------------------------  173 (345)
T ss_pred             CCChHHEEEcCCCCEEEeccccccccccc---------------------------------------------------
Confidence            99999999999999999999988432110                                                   


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHH
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eL  265 (886)
                                                                .....++++|+|||.+.+ ..++.++|||||||++|||
T Consensus       174 ------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el  211 (345)
T cd07877         174 ------------------------------------------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAEL  211 (345)
T ss_pred             ------------------------------------------ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHH
Confidence                                                      011267889999999876 4589999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhc--cC----------------------CCC-----hhhhccChhhHHHHHHccCCCCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLR--HR----------------------VLP-----PQLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~--~~----------------------~~~-----~~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      ++   ||............+.  ..                      ..+     ......++.+.+||.+||++||.+|
T Consensus       212 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R  291 (345)
T cd07877         212 LTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKR  291 (345)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhc
Confidence            98   6643322111111000  00                      000     0111245677899999999999999


Q ss_pred             CCHHHHhcCCCCCCCcCc
Q 002736          314 PKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       314 ps~~eil~h~~~~~~~~~  331 (886)
                      |++.++++||||.....+
T Consensus       292 ~t~~e~l~h~~f~~~~~~  309 (345)
T cd07877         292 ITAAQALAHAYFAQYHDP  309 (345)
T ss_pred             CCHHHHhcChhhhhcCCC
Confidence            999999999999865443

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.93  E-value=1.7e-25  Score=245.22  Aligned_cols=193  Identities=16%  Similarity=0.179  Sum_probs=146.5

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|++++..++ +|.+   .+.++++||| .+++|.++|...               ...++..+++.++.||+.||.|||
T Consensus        76 ~h~~iv~~~~-~~~~---~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH  151 (314)
T cd05099          76 KHKNIINLLG-VCTQ---EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE  151 (314)
T ss_pred             CCCCeeeEEE-EEcc---CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            5888888776 5543   3568899999 789999999542               135788999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.+|++|||+++.........                                        
T Consensus       152 ~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~----------------------------------------  191 (314)
T cd05099         152 SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYK----------------------------------------  191 (314)
T ss_pred             HCCeeeccccceeEEEcCCCcEEEcccccccccccccccc----------------------------------------
Confidence            9999999999999999999999999999986442110000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       192 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG  223 (314)
T cd05099         192 ------------------------------------------------KTSNGRLPVKWMAPEALFDRVYTHQSDVWSFG  223 (314)
T ss_pred             ------------------------------------------------ccccCCCCccccCHHHHccCCcCccchhhHHH
Confidence                                                            00001234569999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||.... .......+.....+......+.++.+++.+||..+|.+||++.++++
T Consensus       224 ~~l~el~~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         224 ILMWEIFTLGGSPYPGIP-VEELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             HHHHHHHhCCCCCCCCCC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            99999997    564332 23333333333333333445667889999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.93  E-value=1.4e-25  Score=249.02  Aligned_cols=209  Identities=15%  Similarity=0.142  Sum_probs=150.2

Q ss_pred             ecccccccCCCCCCccccccc-----------cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           32 LTHGDHLRNQGGLSGVCENEA-----------AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      +...+|++++..+. ++.+..           +...++++|||.+++|.+++..  ..+++..++.++.||++||.|||+
T Consensus        56 l~~l~h~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~  132 (342)
T cd07854          56 IRRLDHDNIVKVYE-VLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQ--GPLSEEHARLFMYQLLRGLKYIHS  132 (342)
T ss_pred             HHhcCCCcchhhHh-hhcccccccccccccccccceEEEEeecccccHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            44557888877665 332221           1245789999988899998854  468999999999999999999999


Q ss_pred             cCeeecccCCcceeecc-CCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          101 QGIVVHNVRPSCFVMSS-FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~-~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      +||+||||||+||+++. ++.+|++|||.++........                                         
T Consensus       133 ~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~-----------------------------------------  171 (342)
T cd07854         133 ANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSH-----------------------------------------  171 (342)
T ss_pred             CCcccCCCCHHHEEEcCCCceEEECCcccceecCCcccc-----------------------------------------
Confidence            99999999999999974 557899999988533111000                                         


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRL  258 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSl  258 (886)
                                                                    ........++.+|+|||.+.+ ..++.++|||||
T Consensus       172 ----------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSl  205 (342)
T cd07854         172 ----------------------------------------------KGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAA  205 (342)
T ss_pred             ----------------------------------------------ccccccccccccccCHHHHhCccccCchhhHHHH
Confidence                                                          000011256889999998765 458899999999


Q ss_pred             HHHHHHHhc---CCCCCchhhHHhHhhccCC--------------------------CC--hhhhccChhhHHHHHHccC
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHRV--------------------------LP--PQLLLKFPKEASFCLWLLH  307 (886)
Q Consensus       259 Gvil~eLl~---pf~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~~~~~~~li~~~L~  307 (886)
                      ||++|||++   ||............+....                          .+  ........++.+|+.+||.
T Consensus       206 Gvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  285 (342)
T cd07854         206 GCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILT  285 (342)
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhC
Confidence            999999999   7755543332222111100                          00  0112344667799999999


Q ss_pred             CCCCCCCCHHHHhcCCCCCCCcC
Q 002736          308 PEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       308 ~dP~~Rps~~eil~h~~~~~~~~  330 (886)
                      .||.+|||+.++++||||+....
T Consensus       286 ~dP~~R~t~~ell~h~~~~~~~~  308 (342)
T cd07854         286 FNPMDRLTAEEALMHPYMSCYSC  308 (342)
T ss_pred             CCchhccCHHHHhCCCccccccC
Confidence            99999999999999999986433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.93  E-value=1.3e-25  Score=245.44  Aligned_cols=193  Identities=17%  Similarity=0.192  Sum_probs=147.7

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|++++..++ +|.+   .+.++++||| .+++|.++|.+.               ...++..+++.++.||+.||+|||
T Consensus        82 ~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH  157 (307)
T cd05098          82 KHKNIINLLG-ACTQ---DGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA  157 (307)
T ss_pred             CCCCEeeEEE-EEec---CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            6888877666 4433   4578889999 778999999542               135788999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+||+++.++.+|++|||++..........                                        
T Consensus       158 ~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~----------------------------------------  197 (307)
T cd05098         158 SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYK----------------------------------------  197 (307)
T ss_pred             HCCcccccccHHheEEcCCCcEEECCCcccccccccchhh----------------------------------------
Confidence            9999999999999999999999999999985432110000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       198 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG  229 (307)
T cd05098         198 ------------------------------------------------KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG  229 (307)
T ss_pred             ------------------------------------------------ccccCCCccceeChHHhccCCCCcHHHHHHHH
Confidence                                                            00001234679999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||. ..........+.....++.+......+.+|+.+||..+|.+||++.++++
T Consensus       230 ~~l~el~~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  294 (307)
T cd05098         230 VLLWEIFTLGGSPYP-GVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  294 (307)
T ss_pred             HHHHHHHcCCCCCCC-cCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence            99999986    553 33333444444444444444456678889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=7.2e-27  Score=247.06  Aligned_cols=184  Identities=17%  Similarity=0.189  Sum_probs=149.7

Q ss_pred             CceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCC
Q 002736           55 DPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG  133 (886)
Q Consensus        55 ~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~  133 (886)
                      ...|+.||. .||.|...|++. +.++...++.|+..+++|++|||++|||.|||||+|.||+..|.+|+.|||+|+.++
T Consensus       493 kyvYmLmEaClGGElWTiLrdR-g~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~  571 (732)
T KOG0614|consen  493 KYVYMLMEACLGGELWTILRDR-GSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIG  571 (732)
T ss_pred             hhhhhhHHhhcCchhhhhhhhc-CCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhc
Confidence            345556666 999999999665 689999999999999999999999999999999999999999999999999998765


Q ss_pred             CCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCccccccccccc
Q 002736          134 SDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRV  213 (886)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  213 (886)
                      ...                                                                             
T Consensus       572 ~g~-----------------------------------------------------------------------------  574 (732)
T KOG0614|consen  572 SGR-----------------------------------------------------------------------------  574 (732)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            432                                                                             


Q ss_pred             ccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCChh
Q 002736          214 NVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ  290 (886)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~  290 (886)
                                    ++-+++|||.|.|||++.+..-+.++|.||||+++||||+   ||...........+++.-.....
T Consensus       575 --------------KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~  640 (732)
T KOG0614|consen  575 --------------KTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEF  640 (732)
T ss_pred             --------------ceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhc
Confidence                          3345699999999999999989999999999999999999   66544444433334433222223


Q ss_pred             hhccChhhHHHHHHccCCCCCCCCC-----HHHHhcCCCCCCCcC
Q 002736          291 LLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEPRD  330 (886)
Q Consensus       291 ~~~~~~~~~~li~~~L~~dP~~Rps-----~~eil~h~~~~~~~~  330 (886)
                      +......+.+||.+++..+|.+|..     +.+|.+|.||.....
T Consensus       641 Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gfdw  685 (732)
T KOG0614|consen  641 PRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEGFDW  685 (732)
T ss_pred             ccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhcCCh
Confidence            3334456779999999999999965     789999999987643

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.93  E-value=1e-25  Score=241.05  Aligned_cols=200  Identities=15%  Similarity=0.162  Sum_probs=152.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+.+.+|++++..++ ++.   ..+.++++||| .|++|.+++.+....++..++..|+.||+.||.|||++||+||||
T Consensus        57 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dl  132 (267)
T cd05066          57 SIMGQFDHPNIIHLEG-VVT---KSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDL  132 (267)
T ss_pred             HHHHhCCCCCcceEEE-EEe---cCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhh
Confidence            3445567899888766 443   34678889998 688999999766567899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.++++|||++.........  .                                               
T Consensus       133 kp~nili~~~~~~~l~dfg~~~~~~~~~~~--~-----------------------------------------------  163 (267)
T cd05066         133 AARNILVNSNLVCKVSDFGLSRVLEDDPEA--A-----------------------------------------------  163 (267)
T ss_pred             chhcEEECCCCeEEeCCCCcccccccccce--e-----------------------------------------------
Confidence            999999999999999999998644211000  0                                               


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            .......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       164 --------------------------------------~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~  205 (267)
T cd05066         164 --------------------------------------YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSY  205 (267)
T ss_pred             --------------------------------------eecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcC
Confidence                                                  00000133567999999998889999999999999999885 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||....... ....+.....++.....++.+.+++.+||+++|.+||++.++++
T Consensus       206 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         206 GERPYWEMSNQD-VIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             CCCCcccCCHHH-HHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHH
Confidence               664443322 23333333333444456678889999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.93  E-value=9.9e-26  Score=239.27  Aligned_cols=196  Identities=19%  Similarity=0.201  Sum_probs=152.8

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      +...+|++++...+ .+.   ..+.++++||| .+++|.+++.. ....+++..++.++.||+.||.|||++||+|+|||
T Consensus        52 l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~  127 (255)
T cd08219          52 LAKMKHPNIVAFKE-SFE---ADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIK  127 (255)
T ss_pred             HHhCCCCCcceEEE-EEE---ECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence            44567888877666 332   34678999999 78899998854 33568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||.+........                                                    
T Consensus       128 p~nili~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------------  155 (255)
T cd08219         128 SKNIFLTQNGKVKLGDFGSARLLTSPGA----------------------------------------------------  155 (255)
T ss_pred             cceEEECCCCcEEEcccCcceeeccccc----------------------------------------------------
Confidence            9999999999999999998853321100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......|++.|+|||++.+..++.++|||||||++|+|++  
T Consensus       156 --------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~  197 (255)
T cd08219         156 --------------------------------------YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLK  197 (255)
T ss_pred             --------------------------------------ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhcc
Confidence                                                  0011367888999999988889999999999999999998  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                       ||........ ...+.....++.....+..+.+|+.+||+.||.+||++.+++.-
T Consensus       198 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         198 HPFQANSWKNL-ILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             CCCCCCCHHHH-HHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence             7765443333 33333444444444456778899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.6e-25  Score=237.05  Aligned_cols=205  Identities=18%  Similarity=0.209  Sum_probs=151.4

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|+.|.+  .+...+|++++..++ ++.   ....++++||| .|++|.+++.+....++...+..++.|+++||.|||+
T Consensus        38 ~~~~e~~--~l~~l~~~~i~~~~~-~~~---~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~  111 (251)
T cd05041          38 KFLQEAE--ILKQYDHPNIVKLIG-VCV---QKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLES  111 (251)
T ss_pred             HHHHHHH--HHHhCCCCCeEEEEE-EEe---cCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3444443  344557887777555 433   34567888998 7899999996655678999999999999999999999


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      +||+||||||+||+++.++.+|++|||++..........                                         
T Consensus       112 ~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-----------------------------------------  150 (251)
T cd05041         112 KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTV-----------------------------------------  150 (251)
T ss_pred             CCEehhhcCcceEEEcCCCcEEEeeccccccccCCccee-----------------------------------------
Confidence            999999999999999999999999999985432110000                                         


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     .......+..|+|||.+.+..++.++|||||||
T Consensus       151 -----------------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~  183 (251)
T cd05041         151 -----------------------------------------------SDGLKQIPIKWTAPEALNYGRYTSESDVWSYGI  183 (251)
T ss_pred             -----------------------------------------------ccccCcceeccCChHhhccCCCCcchhHHHHHH
Confidence                                                           000002245599999998888999999999999


Q ss_pred             HHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       261 il~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ++|||++    ||..... ......+......+.....+..+.+++.+||..+|.+||++.|+++
T Consensus       184 i~~~l~t~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         184 LLWETFSLGDTPYPGMSN-QQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             HHHHHHhccCCCCccCCH-HHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence            9999997    5544433 2223333332222333345677889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.93  E-value=1.8e-25  Score=237.16  Aligned_cols=200  Identities=22%  Similarity=0.283  Sum_probs=156.8

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---CCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---KRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      .+...+|++++...+. ..   ..+.+++++|+ .|++|.+++.+.   ...+++.++..++.||+.||.|||++||+|+
T Consensus        52 ~l~~l~~~~~~~~~~~-~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~  127 (258)
T cd08215          52 ILKKLNHPNIIKYYES-FE---EKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHR  127 (258)
T ss_pred             HHHhcCCCChhheEEE-Ee---cCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecc
Confidence            3445568888776662 22   23678889998 778999999654   3678999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||+|+||+++.++.++++|||.+........                                                 
T Consensus       128 dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~-------------------------------------------------  158 (258)
T cd08215         128 DIKPQNIFLTSNGLVKLGDFGISKVLSSTVD-------------------------------------------------  158 (258)
T ss_pred             cCChHHeEEcCCCcEEECCccceeecccCcc-------------------------------------------------
Confidence            9999999999999999999998854322100                                                 


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ......|++.|+|||.+.+..++.++|+||||+++|+|+
T Consensus       159 -----------------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~  197 (258)
T cd08215         159 -----------------------------------------LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELC  197 (258)
T ss_pred             -----------------------------------------eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHH
Confidence                                                     001126788899999998888999999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          267 C---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      +   ||.... .......+.....++........+.+++.+||..+|.+||++.++|+||||
T Consensus       198 ~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         198 TLKHPFEGEN-LLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             cCCCCCCCCc-HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence            9   664443 333333333333444444556778899999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.2e-24  Score=213.10  Aligned_cols=278  Identities=19%  Similarity=0.287  Sum_probs=229.2

Q ss_pred             ccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEc------Ccc----------c
Q 002736          538 NPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFEC------DAI----------I  601 (886)
Q Consensus       538 ~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~------~~~----------~  601 (886)
                      ++..|.+..+|.+.++++..++     .+|.+.|.||+|++.+.+++|++.|++-.||..      ...          .
T Consensus       165 tASADhTA~iWs~Esg~CL~~Y-----~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  165 TASADHTARIWSLESGACLATY-----TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             ecccccceeEEeeccccceeee-----cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            4567999999999999999888     689999999999999999999999999999972      110          0


Q ss_pred             Cc-------------cc---ccccceEE-ecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEE
Q 002736          602 NE-------------NR---DIHYPVVE-MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVW  664 (886)
Q Consensus       602 ~~-------------~~---~~~~~~~~-~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~  664 (886)
                      .+             ..   .+..|+.. .+|.+.|.+..|-. .+..++++++|.+..+||++++.++..+.+|....+
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence            00             00   11123333 35889999999987 789999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC
Q 002736          665 SIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK  743 (886)
Q Consensus       665 ~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~  743 (886)
                      .++-+| ...++++.+.|.+.+|||++..      -..+..+. |...|+++.|..+  ..+++||.|.+|++||+++.+
T Consensus       319 HcstHp-tQrLVvTsSrDtTFRLWDFRea------I~sV~VFQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  319 HCSTHP-TQRLVVTSSRDTTFRLWDFREA------IQSVAVFQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             ccccCC-cceEEEEeccCceeEeccchhh------cceeeeecccccceeEEEEecC--CceeecCCCceEEEeeecccc
Confidence            999998 8889999999999999999953      34455555 4567999999987  569999999999999999999


Q ss_pred             cceEEEecCCCCeEEEEecCCC-EEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCC--CEEEEEcC
Q 002736          744 IPLCTLIGHNKTVSYVKFVDAT-TLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWD--GYVATGSE  820 (886)
Q Consensus       744 ~~~~~~~~h~~~V~~v~f~~~~-~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g--~~lasgs~  820 (886)
                      .|+.++.. ..+++.++.+.|. .|+.-..+..|++||++.....  .-|-..-+||..-|.|++|..+-  .-|.+++.
T Consensus       390 splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla--RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF  466 (481)
T KOG0300|consen  390 SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA--RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF  466 (481)
T ss_pred             Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccc--cCCcccccccceeeeeeeccccCcccccccccc
Confidence            99999875 4688999998554 7777777889999999865421  12344667999999999998764  36788999


Q ss_pred             CCcEEEEecCCCC
Q 002736          821 TNEVFVYHKAFPM  833 (886)
Q Consensus       821 Dg~v~iwd~~~~~  833 (886)
                      |..+.=|.+..++
T Consensus       467 DR~v~gW~in~p~  479 (481)
T KOG0300|consen  467 DRMVAGWKINTPT  479 (481)
T ss_pred             cceeeeeEecccC
Confidence            9999999988754

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.93  E-value=1.2e-25  Score=248.91  Aligned_cols=220  Identities=17%  Similarity=0.179  Sum_probs=157.5

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      ..+...+|++++..++ ++.   ..+.++++|||.+++|.+++... ..+++..+..++.||+.||.|||++||+|+|||
T Consensus        72 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~l~~~l~~~-~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~  146 (335)
T PTZ00024         72 KIMNEIKHENIMGLVD-VYV---EGDFINLVMDIMASDLKKVVDRK-IRLTESQVKCILLQILNGLNVLHKWYFMHRDLS  146 (335)
T ss_pred             HHHHhCCCcceeeeeE-EEe---cCCcEEEEEeccccCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            3455677888888776 443   34678999999888999999553 568999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++..+.++++|||.+...+.+........                          +...                
T Consensus       147 ~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~--------------------------~~~~----------------  184 (335)
T PTZ00024        147 PANIFINSKGICKIADFGLARRYGYPPYSDTLSK--------------------------DETM----------------  184 (335)
T ss_pred             HHHeEECCCCCEEECCccceeecccccccccccc--------------------------cccc----------------
Confidence            9999999999999999999865543321100000                          0000                


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~-  267 (886)
                                                        ..........++++|+|||.+.+.. ++.++|||||||++|||++ 
T Consensus       185 ----------------------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg  230 (335)
T PTZ00024        185 ----------------------------------QRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTG  230 (335)
T ss_pred             ----------------------------------cccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                              0000011125688999999997744 7999999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhcc---CCC--------------------Ch----hhhccChhhHHHHHHccCCCCCCCCCHHH
Q 002736          268 --PFSTGEEKTRTMSSLRH---RVL--------------------PP----QLLLKFPKEASFCLWLLHPEPSGRPKMGE  318 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~---~~~--------------------~~----~~~~~~~~~~~li~~~L~~dP~~Rps~~e  318 (886)
                        ||...... ..+..+..   ...                    ++    ........+.+++.+||..+|.+||+++|
T Consensus       231 ~~p~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~  309 (335)
T PTZ00024        231 KPLFPGENEI-DQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKE  309 (335)
T ss_pred             CCCCCCCCHH-HHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHH
Confidence              55444332 22211110   000                    00    11123456789999999999999999999


Q ss_pred             HhcCCCCCCCcCc
Q 002736          319 LLQSEFLNEPRDS  331 (886)
Q Consensus       319 il~h~~~~~~~~~  331 (886)
                      +|.||||+.....
T Consensus       310 ~l~~~~~~~~~~~  322 (335)
T PTZ00024        310 ALKHEYFKSDPLP  322 (335)
T ss_pred             HhcCcccCCCCCC
Confidence            9999999876543

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.93  E-value=1.9e-25  Score=240.22  Aligned_cols=201  Identities=19%  Similarity=0.204  Sum_probs=155.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+.   ..+.++++||| .+++|.+++..  ..+++..+..++.||+.+|.|||+.||+|+|||
T Consensus        55 ~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~l~~~i~~--~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~  128 (277)
T cd06641          55 VLSQCDSPYVTKYYG-SYL---KDTKLWIIMEYLGGGSALDLLEP--GPLDETQIATILREILKGLDYLHSEKKIHRDIK  128 (277)
T ss_pred             HHHhcCCCCEeEEEE-EEE---eCCeEEEEEEeCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHccCCeecCCCC
Confidence            445667888888776 332   34678899999 77899999854  468999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++........                                                    
T Consensus       129 p~Ni~i~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------------  156 (277)
T cd06641         129 AANVLLSEHGEVKLADFGVAGQLTDTQI----------------------------------------------------  156 (277)
T ss_pred             HHhEEECCCCCEEEeecccceecccchh----------------------------------------------------
Confidence            9999999999999999998743311100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++.+|+|||.+.+..++.++|+|||||++|+|++  
T Consensus       157 --------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~  198 (277)
T cd06641         157 --------------------------------------KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGE  198 (277)
T ss_pred             --------------------------------------hhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCC
Confidence                                                  0011257888999999988888999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  328 (886)
                       ||...... .....+.....+.........+.+++.+||..+|.+||++.++++||||...
T Consensus       199 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~~  259 (277)
T cd06641         199 PPHSELHPM-KVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRF  259 (277)
T ss_pred             CCCCccchH-HHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhhh
Confidence             66433322 2222222222332333455678899999999999999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.93  E-value=1.6e-25  Score=239.87  Aligned_cols=190  Identities=15%  Similarity=0.161  Sum_probs=143.6

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC---------------CCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK---------------RSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~---------------~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|++++..++ +|.   ..+.++++||| .+++|.++|.+..               ..+++..++.++.||+.||+|||
T Consensus        54 ~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH  129 (270)
T cd05047          54 HHPNIINLLG-ACE---HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS  129 (270)
T ss_pred             cCCCeeeEEE-EEe---cCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6788887666 443   34567899999 7899999985421               24789999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+||+++.++.+|++|||++.......                                           
T Consensus       130 ~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~-------------------------------------------  166 (270)
T cd05047         130 QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV-------------------------------------------  166 (270)
T ss_pred             HCCEeecccccceEEEcCCCeEEECCCCCccccchhh-------------------------------------------
Confidence            9999999999999999999999999999874210000                                           


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      .......+..|+|||.+.+..++.++||||||
T Consensus       167 ------------------------------------------------~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG  198 (270)
T cd05047         167 ------------------------------------------------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYG  198 (270)
T ss_pred             ------------------------------------------------hccCCCCccccCChHHHccCCCCchhhHHHHH
Confidence                                                            00000224569999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||..... ......+......+........+.+++.+||..+|.+||++.++++
T Consensus       199 ~il~el~~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         199 VLLWEIVSLGGTPYCGMTC-AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             HHHHHHHcCCCCCccccCH-HHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence            99999995    6644332 2333333333233333345677889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=1.4e-25  Score=238.81  Aligned_cols=196  Identities=13%  Similarity=0.117  Sum_probs=149.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ ++.    .+..+++||| .+++|.+++.+. ...+++..++.++.||+.||.|||++||+||||
T Consensus        54 ~l~~l~~~~i~~~~~-~~~----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di  128 (260)
T cd05070          54 IMKKLRHDKLVQLYA-VVS----EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDL  128 (260)
T ss_pred             HHHhcCCCceEEEEe-EEC----CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            445567888877666 332    2446789998 788999999653 356899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++.........                                                  
T Consensus       129 ~p~Nili~~~~~~~l~dfg~~~~~~~~~~~--------------------------------------------------  158 (260)
T cd05070         129 RSANILVGDGLVCKIADFGLARLIEDNEYT--------------------------------------------------  158 (260)
T ss_pred             ccceEEEeCCceEEeCCceeeeeccCcccc--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       159 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~  199 (260)
T cd05070         159 ---------------------------------------ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTK  199 (260)
T ss_pred             ---------------------------------------cccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhc
Confidence                                                   0000134567999999988889999999999999999997 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||... ........+.....++.....+..+.+|+.+||.++|.+|||+.+++.
T Consensus       200 g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         200 GRVPYPGM-NNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             CCCCCCCC-CHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence               55433 333344444444344444556678889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.93  E-value=1.5e-25  Score=242.89  Aligned_cols=205  Identities=17%  Similarity=0.291  Sum_probs=157.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++..+. .+.   ..+.++++||| .+++|.+++..  ..+++..++.++.||+.||.|||++||+|+||
T Consensus        69 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl  142 (292)
T cd06657          69 VIMRDYQHENVVEMYN-SYL---VGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLKALSVLHAQGVIHRDI  142 (292)
T ss_pred             HHHHhcCCcchhheee-EEE---eCCEEEEEEecCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            4455677888888776 332   34678999999 78899998854  35899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++........                                                   
T Consensus       143 ~p~Nilv~~~~~~~l~dfg~~~~~~~~~~---------------------------------------------------  171 (292)
T cd06657         143 KSDSILLTHDGRVKLSDFGFCAQVSKEVP---------------------------------------------------  171 (292)
T ss_pred             CHHHEEECCCCCEEEcccccceecccccc---------------------------------------------------
Confidence            99999999999999999998743211100                                                   


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......|++.|+|||.+.+..++.++||||+||++|||++ 
T Consensus       172 ---------------------------------------~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg  212 (292)
T cd06657         172 ---------------------------------------RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDG  212 (292)
T ss_pred             ---------------------------------------cccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhC
Confidence                                                   0011257888999999988889999999999999999998 


Q ss_pred             --CCCCCchhhHHhHhhccCCC--ChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCCCcCc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVL--PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~~  331 (886)
                        ||..... ......+.....  ........+.+.+++.+||..+|.+||++.++++||||.....+
T Consensus       213 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~~~  279 (292)
T cd06657         213 EPPYFNEPP-LKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPP  279 (292)
T ss_pred             CCCCCCCCH-HHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhccCCC
Confidence              6654332 222222322211  11223456778899999999999999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.93  E-value=1.4e-25  Score=239.28  Aligned_cols=196  Identities=14%  Similarity=0.110  Sum_probs=148.8

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ .+.    .+.++++||| .+++|.+++.+. ...+++..++.++.||+.||.|||+.||+||||
T Consensus        54 ~l~~l~~~~i~~~~~-~~~----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl  128 (262)
T cd05071          54 VMKKLRHEKLVQLYA-VVS----EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL  128 (262)
T ss_pred             HHHhCCCCCcceEEE-EEC----CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCcccccc
Confidence            444567888888766 332    3457899999 778999999653 345789999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++|+|||.+.........                                                  
T Consensus       129 ~p~Nill~~~~~~~L~dfg~~~~~~~~~~~--------------------------------------------------  158 (262)
T cd05071         129 RAANILVGENLVCKVADFGLARLIEDNEYT--------------------------------------------------  158 (262)
T ss_pred             CcccEEEcCCCcEEeccCCceeeccccccc--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       159 ---------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~  199 (262)
T cd05071         159 ---------------------------------------ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTK  199 (262)
T ss_pred             ---------------------------------------cccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcC
Confidence                                                   0000135677999999988889999999999999999997 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||...... ..+..+......+.....+..+.+++.+||+.+|.+||++.++++
T Consensus       200 g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         200 GRVPYPGMVNR-EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             CCCCCCCCChH-HHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence               66444333 233333333223333455677889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.93  E-value=2.2e-25  Score=235.54  Aligned_cols=198  Identities=18%  Similarity=0.248  Sum_probs=151.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+.+ .+..   ....++++|| .|++|.+++......+++.++..++.||+.||.|||++|++|+||+
T Consensus        50 ~l~~l~~~~i~~~~~-~~~~---~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~  125 (253)
T cd05122          50 ILKKCKHPNIVKYYG-SYLK---KDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIK  125 (253)
T ss_pred             HHHhCCCCCEeEEEE-EEec---CCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCC
Confidence            344455777777665 3332   3567888998 7799999996655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++|+|||.+........                                                    
T Consensus       126 p~ni~i~~~~~~~l~d~~~~~~~~~~~~----------------------------------------------------  153 (253)
T cd05122         126 AANILLTSDGEVKLIDFGLSAQLSDTKA----------------------------------------------------  153 (253)
T ss_pred             HHHEEEccCCeEEEeecccccccccccc----------------------------------------------------
Confidence            9999999999999999998854422100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                             .....++..|+|||.+.+..++.++||||||+++|+|++  
T Consensus       154 ---------------------------------------~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~  194 (253)
T cd05122         154 ---------------------------------------RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGK  194 (253)
T ss_pred             ---------------------------------------ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCC
Confidence                                                   011256788999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccCCCChhhhc--cChhhHHHHHHccCCCCCCCCCHHHHhcCCC
Q 002736          268 -PFSTGEEKTRTMSSLRHRVLPPQLLL--KFPKEASFCLWLLHPEPSGRPKMGELLQSEF  324 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~L~~dP~~Rps~~eil~h~~  324 (886)
                       ||.............. ...+.....  ....+.+++.+||..||++|||+.|+++|||
T Consensus       195 ~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         195 PPYSELPPMKALFKIAT-NGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             CCCCCCchHHHHHHHHh-cCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence             6654433222222221 222222112  2567889999999999999999999999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.93  E-value=2.4e-25  Score=240.83  Aligned_cols=201  Identities=16%  Similarity=0.220  Sum_probs=146.8

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCc
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS  111 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~  111 (886)
                      +....|++++..++ ++.+   .+.++++|||.++++.+.+......+++.++..++.||+.||.|||++||+|+||+|+
T Consensus        54 l~~l~~~~i~~~~~-~~~~---~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~  129 (288)
T cd07833          54 LRQLRHENIVNLKE-AFRR---KGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPE  129 (288)
T ss_pred             HHhcCCCCeeehhh-eEEE---CCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHH
Confidence            33445777777666 4432   5678999999555555544344456899999999999999999999999999999999


Q ss_pred             ceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCC
Q 002736          112 CFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSS  191 (886)
Q Consensus       112 NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  191 (886)
                      ||+++.++.+|++|||++........                                                      
T Consensus       130 ni~~~~~~~~kl~d~g~~~~~~~~~~------------------------------------------------------  155 (288)
T cd07833         130 NILVSESGVLKLCDFGFARALRARPA------------------------------------------------------  155 (288)
T ss_pred             HeEECCCCCEEEEeeecccccCCCcc------------------------------------------------------
Confidence            99999999999999999854422100                                                      


Q ss_pred             ccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc---
Q 002736          192 AYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                         .......++.+|+|||.+.+. .++.++|||||||++|+|++   
T Consensus       156 -----------------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~  200 (288)
T cd07833         156 -----------------------------------SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEP  200 (288)
T ss_pred             -----------------------------------ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCC
Confidence                                               000113678899999999888 78999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhc--cC------------------CCCh---------hhh-ccChhhHHHHHHccCCCCCCCCCHH
Q 002736          268 PFSTGEEKTRTMSSLR--HR------------------VLPP---------QLL-LKFPKEASFCLWLLHPEPSGRPKMG  317 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~--~~------------------~~~~---------~~~-~~~~~~~~li~~~L~~dP~~Rps~~  317 (886)
                      ||..............  ..                  .+++         ... ..++++.+|+.+||..+|.+||+++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  280 (288)
T cd07833         201 LFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCD  280 (288)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHH
Confidence            5543322221111000  00                  0000         001 1256788999999999999999999


Q ss_pred             HHhcCCCC
Q 002736          318 ELLQSEFL  325 (886)
Q Consensus       318 eil~h~~~  325 (886)
                      ++++||||
T Consensus       281 ~il~~~~f  288 (288)
T cd07833         281 ELLQHPYF  288 (288)
T ss_pred             HHhcCCCC
Confidence            99999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=1.5e-25  Score=241.77  Aligned_cols=201  Identities=19%  Similarity=0.255  Sum_probs=150.8

Q ss_pred             eeecccc-cccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGD-HLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+.... |++++..++ ++.+   .+.++++|||.+++|.+++.... ..+++..++.++.||+.+|.|||++||+|+|
T Consensus        49 ~~l~~~~~h~~i~~~~~-~~~~---~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~d  124 (283)
T cd07830          49 KSLRKLNEHPNIVKLKE-VFRE---NDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRD  124 (283)
T ss_pred             HHHHhccCCCCchhHHH-Hhhc---CCcEEEEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCC
Confidence            3444455 888888776 4443   57889999998999999886543 4789999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |+|+||+++.++.++++|||++.......                                                   
T Consensus       125 l~~~ni~i~~~~~~~l~d~~~~~~~~~~~---------------------------------------------------  153 (283)
T cd07830         125 LKPENLLVSGPEVVKIADFGLAREIRSRP---------------------------------------------------  153 (283)
T ss_pred             CChhhEEEcCCCCEEEeecccceeccCCC---------------------------------------------------
Confidence            99999999999999999999885331110                                                   


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHh
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl  266 (886)
                                                              ......++..|+|||.+.+ ..++.++|||||||++|||+
T Consensus       154 ----------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~  193 (283)
T cd07830         154 ----------------------------------------PYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELY  193 (283)
T ss_pred             ----------------------------------------CcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHH
Confidence                                                    0011257888999998855 44899999999999999999


Q ss_pred             c---CCCCCchhhHHhHhhc--cC------------------CC--------ChhhhccChhhHHHHHHccCCCCCCCCC
Q 002736          267 C---PFSTGEEKTRTMSSLR--HR------------------VL--------PPQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~~~--~~------------------~~--------~~~~~~~~~~~~~li~~~L~~dP~~Rps  315 (886)
                      +   ||..............  ..                  ..        ........+.+.+|+.+||..+|.+||+
T Consensus       194 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt  273 (283)
T cd07830         194 TLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPT  273 (283)
T ss_pred             hCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCC
Confidence            9   5543332222111110  00                  00        0011123467889999999999999999


Q ss_pred             HHHHhcCCCC
Q 002736          316 MGELLQSEFL  325 (886)
Q Consensus       316 ~~eil~h~~~  325 (886)
                      +.|++.||||
T Consensus       274 ~~ei~~~~~~  283 (283)
T cd07830         274 ASQALQHPYF  283 (283)
T ss_pred             HHHHhhCCCC
Confidence            9999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.93  E-value=1.7e-25  Score=237.30  Aligned_cols=204  Identities=22%  Similarity=0.218  Sum_probs=157.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ .+.+.. .+.+++++|+ .+++|.+++.+.. .+++.++..++.|++.||.|||+.|++|+||+
T Consensus        52 ~l~~l~~~~i~~~~~-~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~  128 (260)
T cd06606          52 ILSSLQHPNIVRYYG-SERDEE-KNTLNIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIK  128 (260)
T ss_pred             HHHHcCCCCEeeEEE-EEecCC-CCeEEEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            444556888888666 333221 3678899999 5999999996553 78999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++|+|||.+.........                                                   
T Consensus       129 p~ni~i~~~~~~~l~d~~~~~~~~~~~~~---------------------------------------------------  157 (260)
T cd06606         129 GANILVDSDGVVKLADFGCAKRLGDIETG---------------------------------------------------  157 (260)
T ss_pred             HHHEEEcCCCCEEEcccccEEeccccccc---------------------------------------------------
Confidence            99999999999999999988544221100                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           .......++..|+|||.+.+..++.++|||||||++|+|++  
T Consensus       158 -------------------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~  200 (260)
T cd06606         158 -------------------------------------EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGK  200 (260)
T ss_pred             -------------------------------------ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                 00011256788999999988889999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhcc-CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 -PFSTGEEKTRTMSSLRH-RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                       ||.........+..+.. ...+..+...+..+.+|+.+||..+|.+||++.++++||||
T Consensus       201 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         201 PPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             CCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence             77555433333333332 22333334456788899999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.93  E-value=1.2e-25  Score=249.07  Aligned_cols=212  Identities=17%  Similarity=0.173  Sum_probs=154.5

Q ss_pred             ceeeccc-ccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           29 GVELTHG-DHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+.+. +|++++..++ ++.. .....++++|||.+++|.+++.+.  .+++..++.++.||+.||.|||+.||+|||
T Consensus        57 ~~~l~~l~~h~ni~~~~~-~~~~-~~~~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~i~H~d  132 (337)
T cd07852          57 IMFLQELGDHPNIVKLLN-VIKA-ENDKDIYLVFEYMETDLHAVIRAN--ILEDVHKRYIMYQLLKALKYIHSGNVIHRD  132 (337)
T ss_pred             HHHHHHhcCCCCccceee-eecc-CCCceEEEEecccccCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCC
Confidence            3344555 8999988776 4432 223467899999888999999653  678999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |||+||+++.++.+|++|||++..........                                                
T Consensus       133 l~p~nill~~~~~~kl~d~g~~~~~~~~~~~~------------------------------------------------  164 (337)
T cd07852         133 LKPSNILLNSDCRVKLADFGLARSLSELEENP------------------------------------------------  164 (337)
T ss_pred             CCHHHEEEcCCCcEEEeeccchhccccccccc------------------------------------------------
Confidence            99999999999999999999985442110000                                                


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHh
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl  266 (886)
                                                           .........|+++|+|||.+.+ ..++.++|||||||++|||+
T Consensus       165 -------------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~  207 (337)
T cd07852         165 -------------------------------------ENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEML  207 (337)
T ss_pred             -------------------------------------cCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHH
Confidence                                                 0001122468999999998865 44889999999999999999


Q ss_pred             c---CCCCCchhhHHhHh--------------------------hccCC---CChhhhccChhhHHHHHHccCCCCCCCC
Q 002736          267 C---PFSTGEEKTRTMSS--------------------------LRHRV---LPPQLLLKFPKEASFCLWLLHPEPSGRP  314 (886)
Q Consensus       267 ~---pf~~~~~~~~~~~~--------------------------~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rp  314 (886)
                      +   ||............                          +....   ........+..+.++|.+||+.+|.+||
T Consensus       208 tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp  287 (337)
T cd07852         208 LGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRL  287 (337)
T ss_pred             hCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCccccc
Confidence            9   56433221111100                          00000   0111122456778999999999999999


Q ss_pred             CHHHHhcCCCCCCCc
Q 002736          315 KMGELLQSEFLNEPR  329 (886)
Q Consensus       315 s~~eil~h~~~~~~~  329 (886)
                      |+.++++|||+....
T Consensus       288 s~~~il~~~~~~~~~  302 (337)
T cd07852         288 TAEEALEHPYVAQFH  302 (337)
T ss_pred             CHHHHhhChhhhhhc
Confidence            999999999997653

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=1.6e-25  Score=241.71  Aligned_cols=200  Identities=18%  Similarity=0.108  Sum_probs=146.9

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++.+++ +|.. .....++++||| .+++|.+++.+  ..+++.+++.++.||+.||+|||++||+|||||
T Consensus        59 ~l~~l~h~~i~~~~~-~~~~-~~~~~~~lv~e~~~~~~l~~~~~~--~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlk  134 (283)
T cd05080          59 ILKTLYHENIVKYKG-CCSE-QGGKGLQLIMEYVPLGSLRDYLPK--HKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLA  134 (283)
T ss_pred             HHHhCCCCCEeeEEE-EEec-CCCceEEEEecCCCCCCHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHCCeeccccC
Confidence            455668888888776 4433 234567889998 88999999965  358999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+|||++.++.++++|||+++..........                                                 
T Consensus       135 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~-------------------------------------------------  165 (283)
T cd05080         135 ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR-------------------------------------------------  165 (283)
T ss_pred             hheEEEcCCCcEEEeecccccccCCcchhhc-------------------------------------------------
Confidence            9999999999999999999864421100000                                                 


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       166 --------------------------------------~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~  207 (283)
T cd05080         166 --------------------------------------VREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHC  207 (283)
T ss_pred             --------------------------------------cCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCC
Confidence                                                  0000134566999999988889999999999999999998  


Q ss_pred             -CCCCCchhhHHhH--------------hhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 -PFSTGEEKTRTMS--------------SLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 -pf~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                       ||.........+.              .+.....++.....++.+.+++.+||.++|++||++.++++
T Consensus       208 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         208 DSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             CCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence             5533221111100              01111112222344577889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.92  E-value=1.9e-25  Score=239.02  Aligned_cols=199  Identities=13%  Similarity=0.163  Sum_probs=152.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.   ..+.++++||| .+++|.+++.+....+++.++..++.|++.||+|||++||+|||||
T Consensus        59 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlk  134 (268)
T cd05063          59 IMGQFSHHNIIRLEG-VVT---KFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLA  134 (268)
T ss_pred             HHhcCCCCCeeEEEE-EEc---cCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence            445567888877666 443   34678899998 7889999997665678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++..........                                             .    
T Consensus       135 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~---------------------------------------------~----  165 (268)
T cd05063         135 ARNILVNSNLECKVSDFGLSRVLEDDPEGT---------------------------------------------Y----  165 (268)
T ss_pred             hhhEEEcCCCcEEECCCccceecccccccc---------------------------------------------e----
Confidence            999999999999999999985432110000                                             0    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            .......+..|+|||.+.+..++.++|||||||++|||++  
T Consensus       166 --------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g  207 (268)
T cd05063         166 --------------------------------------TTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFG  207 (268)
T ss_pred             --------------------------------------eccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCC
Confidence                                                  0000122456999999988889999999999999999886  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||..... ...+..+......+.....++.+.+++.+||..+|.+||++.++++
T Consensus       208 ~~p~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         208 ERPYWDMSN-HEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             CCCCCcCCH-HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence              6654433 3344444444344444456778889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.92  E-value=4.1e-26  Score=242.80  Aligned_cols=199  Identities=23%  Similarity=0.275  Sum_probs=149.3

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeecc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ..+...+|+|++.+++ +|.   ..+.++++||| .+++|.++|... ...++...+..|+.||+.||.|||+++|+|+|
T Consensus        53 ~~l~~l~h~ni~~~~g-~~~---~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~  128 (259)
T PF07714_consen   53 QILRKLRHPNIVKLYG-FCI---ENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGN  128 (259)
T ss_dssp             HHHHTHSBTTBE-EEE-EEE---SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST
T ss_pred             cccccccccccccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444569999998776 666   34558888999 678999999665 56789999999999999999999999999999


Q ss_pred             cCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccc
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  187 (886)
                      |+|+||+++.++.+||+|||++..........                                                
T Consensus       129 l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~------------------------------------------------  160 (259)
T PF07714_consen  129 LSPSNILLDSNGQVKLSDFGLSRPISEKSKYK------------------------------------------------  160 (259)
T ss_dssp             -SGGGEEEETTTEEEEESTTTGEETTTSSSEE------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccc------------------------------------------------
Confidence            99999999999999999999985431110000                                                


Q ss_pred             ccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~  267 (886)
                                                              ......+...|+|||.+.+..++.++||||||+++|||++
T Consensus       161 ----------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~  200 (259)
T PF07714_consen  161 ----------------------------------------NDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILT  200 (259)
T ss_dssp             ----------------------------------------ESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHT
T ss_pred             ----------------------------------------cccccccccccccccccccccccccccccccccccccccc
Confidence                                                    0000134667999999988889999999999999999998


Q ss_pred             ----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                          ||... ........+.....++.....+..+.+++..||..+|.+||++.++++
T Consensus       201 ~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  201 LGKFPFSDY-DNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             TSSGTTTTS-CHHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             ccccccccc-ccccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                66444 334444444444444445556778889999999999999999999975

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.92  E-value=1.9e-25  Score=243.41  Aligned_cols=205  Identities=18%  Similarity=0.224  Sum_probs=151.9

Q ss_pred             eeecccccccCCCCCCccccccc-------cCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEA-------AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQG  102 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~g  102 (886)
                      ..+...+|++++..++ ++.++.       ....+++++||.+++|..++......+++.+++.++.||+.||.|||+.|
T Consensus        58 ~~~~~l~h~~i~~~~~-~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~  136 (302)
T cd07864          58 KILRQLNHRNIVNLKE-IVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKN  136 (302)
T ss_pred             HHHHhCCCCCeeeeeh-eecCcchhhhccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            3445567888888766 554432       23478999999777898888665567899999999999999999999999


Q ss_pred             eeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          103 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       103 iiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |+|+||||+||+++..+.+|++|||++.........                                            
T Consensus       137 i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~--------------------------------------------  172 (302)
T cd07864         137 FLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESR--------------------------------------------  172 (302)
T ss_pred             eecCCCCHHHEEECCCCcEEeCcccccccccCCccc--------------------------------------------
Confidence            999999999999999999999999998543211000                                            


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVL  261 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvi  261 (886)
                                                                   ......++..|+|||.+.+. .++.++|||||||+
T Consensus       173 ---------------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~  207 (302)
T cd07864         173 ---------------------------------------------PYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCI  207 (302)
T ss_pred             ---------------------------------------------ccccceeccCccChHHhcCCCCCCchhHHHHHHHH
Confidence                                                         00001446779999988654 47899999999999


Q ss_pred             HHHHhc---CCCCCchhhHHhHhhcc---CCCC--------------------------hhhhccChhhHHHHHHccCCC
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRH---RVLP--------------------------PQLLLKFPKEASFCLWLLHPE  309 (886)
Q Consensus       262 l~eLl~---pf~~~~~~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~~~li~~~L~~d  309 (886)
                      +|||++   ||...+... .+..+..   ...+                          ..+...++.+.+++.+||..+
T Consensus       208 ~~el~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  286 (302)
T cd07864         208 LGELFTKKPIFQANQELA-QLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLD  286 (302)
T ss_pred             HHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCC
Confidence            999999   554433222 1111111   1000                          011224567889999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 002736          310 PSGRPKMGELLQSEFL  325 (886)
Q Consensus       310 P~~Rps~~eil~h~~~  325 (886)
                      |.+||++.+++.||||
T Consensus       287 P~~Rp~~~~il~~~~~  302 (302)
T cd07864         287 PSKRCTAEEALNSPWL  302 (302)
T ss_pred             hhhCCCHHHHhcCCCC
Confidence            9999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.92  E-value=1.9e-25  Score=242.76  Aligned_cols=198  Identities=16%  Similarity=0.150  Sum_probs=146.9

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC----------CCcChHHHHHHHHHHHHHHHhhc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK----------RSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~----------~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .+....|++++..++ +|.+   .+.++++||+ .+++|.++|.+..          ..+++..++.++.||+.||.|||
T Consensus        72 ~l~~l~~~~i~~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH  147 (296)
T cd05051          72 ILSRLSDPNIARLLG-VCTV---DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE  147 (296)
T ss_pred             HHHhcCCCCEeEEEE-EEec---CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            344456788877665 4443   3678899998 7899999995432          26899999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+||+++.++.++++|||++.........                                         
T Consensus       148 ~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~-----------------------------------------  186 (296)
T cd05051         148 SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYY-----------------------------------------  186 (296)
T ss_pred             HcCccccccchhceeecCCCceEEccccceeecccCcce-----------------------------------------
Confidence            999999999999999999999999999998543211000                                         


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                     .......++..|+|||.+.+..++.++||||||
T Consensus       187 -----------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  219 (296)
T cd05051         187 -----------------------------------------------RVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFG  219 (296)
T ss_pred             -----------------------------------------------eecCcCCCCceecCHHHhhcCCCCccchhhhhH
Confidence                                                           000112456789999999888899999999999


Q ss_pred             HHHHHHhc-----CCCCCchhhHHhHhhcc-------CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC-----PFSTGEEKTRTMSSLRH-------RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~-----pf~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++     ||........ ......       ....+.....+.++.+++.+||..||.+||++.|+++
T Consensus       220 ~~l~el~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         220 VTLWEILTLCREQPYEHLTDQQV-IENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             HHHHHHHhcCCCCCCCCcChHHH-HHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHH
Confidence            99999986     5543332222 222211       1112222334567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.92  E-value=3e-25  Score=237.60  Aligned_cols=201  Identities=14%  Similarity=0.174  Sum_probs=150.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+....|+|++.+++ .+.   ....++++||| .+++|.+++......+++.+++.++.||+.||.|||++||+|+|||
T Consensus        58 ~l~~l~h~ni~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~  133 (269)
T cd05065          58 IMGQFDHPNIIHLEG-VVT---KSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLA  133 (269)
T ss_pred             HHHhCCCcCcceEEE-EEC---CCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccC
Confidence            344567888888766 332   34678899998 7889999997655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.+|++|||++............                                                
T Consensus       134 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~------------------------------------------------  165 (269)
T cd05065         134 ARNILVNSNLVCKVSDFGLSRFLEDDTSDPTY------------------------------------------------  165 (269)
T ss_pred             hheEEEcCCCcEEECCCccccccccCcccccc------------------------------------------------
Confidence            99999999999999999988543211000000                                                


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                      .     .......+..|+|||.+.+..++.++|||||||++|||++  
T Consensus       166 --------------------------------~-----~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g  208 (269)
T cd05065         166 --------------------------------T-----SSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYG  208 (269)
T ss_pred             --------------------------------c-----cccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCC
Confidence                                            0     0000012456999999988889999999999999999875  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||...... .....+......+.+...++.+.+++.+||..+|.+||++.+++.
T Consensus       209 ~~p~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         209 ERPYWDMSNQ-DVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             CCCCCCCCHH-HHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence              66544333 233333333333334456678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=2.4e-24  Score=213.62  Aligned_cols=219  Identities=18%  Similarity=0.273  Sum_probs=187.5

Q ss_pred             ceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCc------------------eEEEEecccCCcEEEEEEccC
Q 002736          610 PVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRS------------------QVLTEMREHERRVWSIDFSSA  671 (886)
Q Consensus       610 ~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~------------------~~~~~~~~h~~~v~~v~~~p~  671 (886)
                      ..+...|++++.+-+|++ ++.++|+|+.|..|+|.|++..                  -.++++-.|...|+++.|+| 
T Consensus       105 t~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-  182 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-  182 (430)
T ss_pred             eEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence            445567999999999999 7999999999999999998721                  24678888999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEE--E
Q 002736          672 DPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT--L  749 (886)
Q Consensus       672 ~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~--~  749 (886)
                      ....|++|+.|++|+++|+.....    ......+....+|.++.|+|. |.+|++|..-.++++||+.+.+.-+..  -
T Consensus       183 re~ILiS~srD~tvKlFDfsK~sa----KrA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSA----KRAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHH----HHHHHHhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEeeecCcc
Confidence            888999999999999999987654    344455666788999999999 999999999999999999987742221  2


Q ss_pred             ecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEee-cCC-CceeEEEEecCCCEEEEEcCCCcEEE
Q 002736          750 IGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFT-GHT-NVKNFVGLSVWDGYVATGSETNEVFV  826 (886)
Q Consensus       750 ~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~-~h~-~~v~~v~~sp~g~~lasgs~Dg~v~i  826 (886)
                      .+|..+|++|.|+ .+.+.+|||.||.|+|||--+++      ++.++. .|. ..|.+..|..+|+||.+.+.|..|++
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r------Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR------CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL  331 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccHH------HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence            4799999999997 89999999999999999988774      477664 564 46888999999999999999999999


Q ss_pred             EecCCCCcceeeccC
Q 002736          827 YHKAFPMPALSFNFN  841 (886)
Q Consensus       827 wd~~~~~~~~~~~~~  841 (886)
                      |.+.++.++..+.-.
T Consensus       332 WEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  332 WEISTGRMLKEYTGA  346 (430)
T ss_pred             eeecCCceEEEEecC
Confidence            999999999887643

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.92  E-value=2.5e-25  Score=246.11  Aligned_cols=193  Identities=17%  Similarity=0.182  Sum_probs=147.0

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      +|++++..++ +|..   .+.++++||| .+++|.++|.+.               ...++..+++.++.||+.||.|||
T Consensus        76 ~h~~iv~~~~-~~~~---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH  151 (334)
T cd05100          76 KHKNIINLLG-ACTQ---DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA  151 (334)
T ss_pred             CCCCeeeeeE-EEcc---CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            6888887666 5543   4568888998 788999999542               234788899999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.+||+|||+++.........                                        
T Consensus       152 ~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~----------------------------------------  191 (334)
T cd05100         152 SQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYK----------------------------------------  191 (334)
T ss_pred             HCCeeccccccceEEEcCCCcEEECCcccceecccccccc----------------------------------------
Confidence            9999999999999999999999999999985432110000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       192 ------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  223 (334)
T cd05100         192 ------------------------------------------------KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG  223 (334)
T ss_pred             ------------------------------------------------cccCCCcCceEcCHHHhccCCcCchhhhHHHH
Confidence                                                            00001335679999999988899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |+||||++    ||... ........+.....++........+.+++.+||+.+|.+||++.|+++
T Consensus       224 ~il~el~~~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~  288 (334)
T cd05100         224 VLLWEIFTLGGSPYPGI-PVEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVE  288 (334)
T ss_pred             HHHHHHHhcCCCCCCCC-CHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence            99999986    55433 333344444443333444455678889999999999999999999876

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.92  E-value=1.5e-25  Score=242.27  Aligned_cols=199  Identities=20%  Similarity=0.274  Sum_probs=147.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+.+.+|++++..++ ++.   ..+.++++||| .+++|.+++... ..+++.+++.++.||+.||.|||++||+|+||+
T Consensus        53 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~  127 (286)
T cd07846          53 MLKQLRHENLVNLIE-VFR---RKKRLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQILRGIEFCHSHNIIHRDIK  127 (286)
T ss_pred             HHHhcCCcchhhHHH-hcc---cCCeEEEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC
Confidence            455567888877666 443   35678999999 666777766443 458999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||++........                                                    
T Consensus       128 p~ni~~~~~~~~~l~dfg~~~~~~~~~~----------------------------------------------------  155 (286)
T cd07846         128 PENILVSQSGVVKLCDFGFARTLAAPGE----------------------------------------------------  155 (286)
T ss_pred             HHHEEECCCCcEEEEeeeeeeeccCCcc----------------------------------------------------
Confidence            9999999999999999998853311100                                                    


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc-
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                            ......++.+|+|||.+.+. .++.++|||||||++|||++ 
T Consensus       156 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g  197 (286)
T cd07846         156 --------------------------------------VYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTG  197 (286)
T ss_pred             --------------------------------------ccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcC
Confidence                                                  00112678899999998764 47889999999999999999 


Q ss_pred             --CCCCCchhhHHhHhhcc---C------------------CCC---------hhhhccChhhHHHHHHccCCCCCCCCC
Q 002736          268 --PFSTGEEKTRTMSSLRH---R------------------VLP---------PQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~---~------------------~~~---------~~~~~~~~~~~~li~~~L~~dP~~Rps  315 (886)
                        ||...... .....+..   .                  ..+         .........+.+|+.+||..+|.+||+
T Consensus       198 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~  276 (286)
T cd07846         198 EPLFPGDSDI-DQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPS  276 (286)
T ss_pred             CCCCCCCchH-HHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchh
Confidence              44332221 11111000   0                  000         011234566889999999999999999


Q ss_pred             HHHHhcCCCC
Q 002736          316 MGELLQSEFL  325 (886)
Q Consensus       316 ~~eil~h~~~  325 (886)
                      +.++++||||
T Consensus       277 ~~~il~~~~~  286 (286)
T cd07846         277 SSQLLHHEFF  286 (286)
T ss_pred             HHHHhcCCCC
Confidence            9999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.92  E-value=2.6e-25  Score=236.84  Aligned_cols=196  Identities=13%  Similarity=0.119  Sum_probs=149.0

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+....|++++..++ ++.    .+.++++||| .+++|.+++.+. ...+++..+..++.||+.||.|||+.||+|+||
T Consensus        54 ~l~~l~h~~i~~~~~-~~~----~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl  128 (260)
T cd05069          54 IMKKLRHDKLVPLYA-VVS----EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDL  128 (260)
T ss_pred             HHHhCCCCCeeeEEE-EEc----CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeeccc
Confidence            445567888877665 332    3457889999 678999999653 345789999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++.........                                                  
T Consensus       129 ~~~Nill~~~~~~~l~dfg~~~~~~~~~~~--------------------------------------------------  158 (260)
T cd05069         129 RAANILVGDNLVCKIADFGLARLIEDNEYT--------------------------------------------------  158 (260)
T ss_pred             CcceEEEcCCCeEEECCCccceEccCCccc--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       159 ---------------------------------------~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~  199 (260)
T cd05069         159 ---------------------------------------ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTK  199 (260)
T ss_pred             ---------------------------------------ccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhC
Confidence                                                   0000134567999999988889999999999999999996 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||.... .......+.....++.....+..+.+++.+||.++|.+||++.++++
T Consensus       200 g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         200 GRVPYPGMV-NREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             CCCCCCCCC-HHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence               664433 33333444444333444455677889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=5.3e-26  Score=250.44  Aligned_cols=200  Identities=18%  Similarity=0.190  Sum_probs=159.5

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +..+....+|+|++.+|| ++.+   ..+++|+||+ .||+|.++|++....++..+...++.+.+.||+|||++++|||
T Consensus       211 EArvMr~l~H~NVVr~yG-Va~~---~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHR  286 (474)
T KOG0194|consen  211 EARVMRQLNHPNVVRFYG-VAVL---EEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHR  286 (474)
T ss_pred             HHHHHHhCCCCCEEEEEE-EEcC---CCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcch
Confidence            334445589999999998 7764   4689999999 8999999998877789999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||-..|+|++.++.+||+|||+++...........                                             
T Consensus       287 DIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~---------------------------------------------  321 (474)
T KOG0194|consen  287 DIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFL---------------------------------------------  321 (474)
T ss_pred             hHhHHHheecCCCeEEeCccccccCCcceeecccc---------------------------------------------
Confidence            99999999999999999999998533100000000                                             


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                                   .--...|+|||.+....|++++|||||||++||++
T Consensus       322 ---------------------------------------------~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif  356 (474)
T KOG0194|consen  322 ---------------------------------------------KKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIF  356 (474)
T ss_pred             ---------------------------------------------ccCcceecChhhhccCccccccchhheeeeEEeee
Confidence                                                         00123489999999999999999999999999999


Q ss_pred             c----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          267 C----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       267 ~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +    ||.+..........+......+.+...+.....++..|+..+|++||++.++.+
T Consensus       357 ~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  357 ENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             ccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence            8    776665554444444555555555555667779999999999999999998866

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.92  E-value=3e-25  Score=246.32  Aligned_cols=196  Identities=19%  Similarity=0.236  Sum_probs=145.9

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC--------------------------------------
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK--------------------------------------   76 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~--------------------------------------   76 (886)
                      +|++++..++ +|..  ....++++||| .+++|.++|....                                      
T Consensus        69 ~h~niv~~~~-~~~~--~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (343)
T cd05103          69 HHLNVVNLLG-ACTK--PGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQ  145 (343)
T ss_pred             CCccHhhhcc-eeec--CCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhcccccccc
Confidence            5677777776 5543  23567889999 8899999985321                                      


Q ss_pred             ----------------------------CCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCc
Q 002736           77 ----------------------------RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESAS  128 (886)
Q Consensus        77 ----------------------------~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~  128 (886)
                                                  ..++...+..++.||+.||.|||++||+||||||+|||++.++.+|++|||+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~  225 (343)
T cd05103         146 SSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGL  225 (343)
T ss_pred             ccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEeccc
Confidence                                        2367788899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccc
Q 002736          129 CSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI  208 (886)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (886)
                      +.........                                                                      
T Consensus       226 ~~~~~~~~~~----------------------------------------------------------------------  235 (343)
T cd05103         226 ARDIYKDPDY----------------------------------------------------------------------  235 (343)
T ss_pred             ccccccCcch----------------------------------------------------------------------
Confidence            8543211000                                                                      


Q ss_pred             cccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhcc
Q 002736          209 LDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRH  284 (886)
Q Consensus       209 ~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~  284 (886)
                                        .......++..|+|||.+.+..++.++|||||||++|||++    ||............+..
T Consensus       236 ------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~  297 (343)
T cd05103         236 ------------------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE  297 (343)
T ss_pred             ------------------hhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhc
Confidence                              00000134567999999988889999999999999999986    66443333333333333


Q ss_pred             CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcC
Q 002736          285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       285 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  322 (886)
                      ...++.+....+.+.+++..||+.+|.+||++.|+++|
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         298 GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            33333333345778899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.92  E-value=1.4e-25  Score=238.92  Aligned_cols=200  Identities=20%  Similarity=0.229  Sum_probs=153.9

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ..+.+.+|++++..++ .+.   ....++++||| .+++|.+++.+   ....+++.+++.++.||+.||.|||++||+|
T Consensus        54 ~~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h  129 (260)
T cd08222          54 QLLSKLDHPAIVKFHA-SFL---ERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILH  129 (260)
T ss_pred             HHHHhCCCCcHHHHHH-HHh---cCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccc
Confidence            3455678999988777 333   23568889999 78899988842   3457899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      +||||+||+++. +.++++|||++........                                                
T Consensus       130 ~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~------------------------------------------------  160 (260)
T cd08222         130 RDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCD------------------------------------------------  160 (260)
T ss_pred             cCCChhheEeec-CCEeecccCceeecCCCcc------------------------------------------------
Confidence            999999999974 6799999998854311100                                                


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                ......|++.|+|||.+.+..++.++|+||||+++|+|
T Consensus       161 ------------------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l  198 (260)
T cd08222         161 ------------------------------------------LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEM  198 (260)
T ss_pred             ------------------------------------------cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHH
Confidence                                                      00012567889999999888889999999999999999


Q ss_pred             hc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          266 FC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ++   ||..... ......+.....+......++.+.+++.+||..+|.+||++.++++||||
T Consensus       199 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         199 CCLAHAFEGQNF-LSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             HhCCCCCCCccH-HHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence            99   6644333 33333333333333334456788899999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.5e-24  Score=225.54  Aligned_cols=292  Identities=12%  Similarity=0.208  Sum_probs=235.9

Q ss_pred             EeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEec
Q 002736          558 DLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSN  637 (886)
Q Consensus       558 ~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s  637 (886)
                      .+++-..+.|...|+++.++...+++.|||. |.|||||+....+.....+  +-......-|.++...| ++..|++|+
T Consensus       409 harq~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~p-dgrtLivGG  484 (705)
T KOG0639|consen  409 HARQINTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLP-DGRTLIVGG  484 (705)
T ss_pred             hHHhhhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc--ccccCcccceeeeEecC-CCceEEecc
Confidence            3344455789999999999999999999997 8999999987533221111  11122345578888888 799999999


Q ss_pred             CCCcEEEEECCCce--EEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeec-CCCeEE
Q 002736          638 FEGVVQVWDVSRSQ--VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-KANVCC  714 (886)
Q Consensus       638 ~Dg~V~iWd~~t~~--~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~  714 (886)
                      +-.+|.|||+.+..  ...++....-....++.+| |.++.++|+.||.|.|||+.+       ...+..+.+ ...+.|
T Consensus       485 eastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhn-------q~~VrqfqGhtDGasc  556 (705)
T KOG0639|consen  485 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHN-------QTLVRQFQGHTDGASC  556 (705)
T ss_pred             ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEccc-------ceeeecccCCCCCcee
Confidence            99999999997654  3344444445677889998 899999999999999999998       666667664 567999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCc
Q 002736          715 VQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPL  793 (886)
Q Consensus       715 v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~  793 (886)
                      |..+++ |..|.+|+-|++|++||+|.++++...  .....|.++.++ ++++|+.|-.++.+.|-.+....       .
T Consensus       557 Idis~d-GtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------k  626 (705)
T KOG0639|consen  557 IDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------K  626 (705)
T ss_pred             EEecCC-CceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCcc-------c
Confidence            999999 899999999999999999998753221  234678888886 99999999999999998887653       4


Q ss_pred             eEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEE
Q 002736          794 HSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVA  873 (886)
Q Consensus       794 ~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s  873 (886)
                      ..+.-|.+.|.++.|++.|+++++.+.|+.+..|.+..+..++..+              ....|.++..+.|.. ++||
T Consensus       627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------------E~SsVlsCDIS~ddk-yIVT  691 (705)
T KOG0639|consen  627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------------ESSSVLSCDISFDDK-YIVT  691 (705)
T ss_pred             eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------------ccCcceeeeeccCce-EEEe
Confidence            6677799999999999999999999999999999999888776543              134599999999999 9999


Q ss_pred             EeCCCCEEEEEeC
Q 002736          874 ANSSGNIKILEMV  886 (886)
Q Consensus       874 ~~~dg~I~iw~l~  886 (886)
                      |+.|....||+++
T Consensus       692 GSGdkkATVYeV~  704 (705)
T KOG0639|consen  692 GSGDKKATVYEVI  704 (705)
T ss_pred             cCCCcceEEEEEe
Confidence            9999999999874

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.9e-25  Score=235.14  Aligned_cols=198  Identities=19%  Similarity=0.258  Sum_probs=154.8

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +.+..|++++..+. ++.+   ...++++||+ .+++|.+++... ..+++..+..++.||+.||.|||++||+||||||
T Consensus        53 l~~l~~~~i~~~~~-~~~~---~~~~~~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p  127 (254)
T cd06627          53 LKNLKHPNIVKYIG-SIET---SDSLYIILEYAENGSLRQIIKKF-GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKA  127 (254)
T ss_pred             HHhCCCCCccEEEE-EEEe---CCEEEEEEecCCCCcHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCH
Confidence            34456777776555 3332   3668899998 788999999654 6789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++........                                                     
T Consensus       128 ~ni~i~~~~~~~l~d~~~~~~~~~~~~-----------------------------------------------------  154 (254)
T cd06627         128 ANILTTKDGVVKLADFGVATKLNDVSK-----------------------------------------------------  154 (254)
T ss_pred             HHEEECCCCCEEEeccccceecCCCcc-----------------------------------------------------
Confidence            999999999999999999854422100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           ......++..|+|||.+.+..++.++||||||+++|+|++   
T Consensus       155 -------------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~  197 (254)
T cd06627         155 -------------------------------------DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNP  197 (254)
T ss_pred             -------------------------------------cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCC
Confidence                                                 0001256888999999988778999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      ||...... ..+........++......+.+.+++.+||..+|++||++.+++.||||
T Consensus       198 p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         198 PYYDLNPM-AALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             CCCCccHH-HHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence            66544432 3333333333444444556788899999999999999999999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.92  E-value=2.7e-25  Score=237.91  Aligned_cols=198  Identities=14%  Similarity=0.153  Sum_probs=142.1

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC----CCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK----RSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~----~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      .+...+|+|++.+++ .|.   ..+.++++||| .+++|.++|.+..    ...++..++.++.||+.||.|||++||+|
T Consensus        48 ~~~~l~h~nii~~~~-~~~---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH  123 (269)
T cd05042          48 PYRELNHPNVLQCLG-QCI---ESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIH  123 (269)
T ss_pred             HHHhCCCCCcceEEE-EEC---CCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEec
Confidence            344568999988776 443   35678999999 7889999996532    23467788999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||++.++.+|++|||++..........                                              
T Consensus       124 ~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~----------------------------------------------  157 (269)
T cd05042         124 SDLALRNCQLTADLSVKIGDYGLALEQYPEDYYI----------------------------------------------  157 (269)
T ss_pred             ccccHhheEecCCCcEEEeccccccccccchhee----------------------------------------------
Confidence            9999999999999999999999884321110000                                              


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-------CCCCcccccchH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-------APVSCASDIYRL  258 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-------~~~s~~sDIwSl  258 (886)
                                                                ......++..|+|||++..       ..++.++|||||
T Consensus       158 ------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diwsl  195 (269)
T cd05042         158 ------------------------------------------TKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSL  195 (269)
T ss_pred             ------------------------------------------ccCCCCCcccccCHHHHhhccccccccccchhhHHHHH
Confidence                                                      0000145677999998743       347889999999


Q ss_pred             HHHHHHHhc----CCCCCchhhHHhHhhccCCC---Chh-hhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          259 GVLLFELFC----PFSTGEEKTRTMSSLRHRVL---PPQ-LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       259 Gvil~eLl~----pf~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ||++|||++    ||............+.....   .+. .....+....++..|+ .||.+||+++++++
T Consensus       196 G~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         196 GVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             HHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHH
Confidence            999999997    55444433333333332211   111 2234455668888888 59999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.92  E-value=2e-25  Score=236.98  Aligned_cols=204  Identities=20%  Similarity=0.262  Sum_probs=154.2

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCC-cChHHHHHHHHHHHHHHHhhc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRS-VDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~-l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .++.|...+  ...+|++++.++. .+.+   .+.++++||+ .|++|.+++...... +++..+..++.||+.||.|||
T Consensus        47 ~~~~e~~~l--~~l~~~~i~~~~~-~~~~---~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh  120 (258)
T smart00219       47 EFLREARIM--RKLDHPNIVKLLG-VCTE---EEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE  120 (258)
T ss_pred             HHHHHHHHH--HhcCCCchheEEE-EEcC---CCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Confidence            444554433  3347888888776 4433   2578888888 789999999654333 899999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+|+||||+||+++.++.++++|||++.........                                         
T Consensus       121 ~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----------------------------------------  159 (258)
T smart00219      121 SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYY-----------------------------------------  159 (258)
T ss_pred             cCCeeecccccceEEEccCCeEEEcccCCceeccccccc-----------------------------------------
Confidence            999999999999999999999999999998544221000                                         


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......+++.|+|||.+.+..++.++||||||
T Consensus       160 ------------------------------------------------~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG  191 (258)
T smart00219      160 ------------------------------------------------KKKGGKLPIRWMAPESLKDGKFTSKSDVWSFG  191 (258)
T ss_pred             ------------------------------------------------ccccCCCcccccChHHhccCCCCcchhHHHHH
Confidence                                                            00001246779999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++    ||.. .........+.....++.....+..+.+++.+||..+|.+|||+.|+++
T Consensus       192 ~i~~~l~~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      192 VLLWEIFTLGESPYPG-MSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             HHHHHHHhCCCCCCCC-CCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence            99999997    4433 3334444444444444444456778889999999999999999999986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.92  E-value=3.1e-25  Score=239.03  Aligned_cols=201  Identities=20%  Similarity=0.268  Sum_probs=150.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+...+|++++...+ ++.+   .+.++++||+.+++|.+++.+....+++..++.++.||+.||.|||++||+|+||+|
T Consensus        51 ~l~~~~~~~i~~~~~-~~~~---~~~~~~v~e~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~  126 (282)
T cd07829          51 LLKELKHPNIVKLLD-VIHT---ERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKP  126 (282)
T ss_pred             HHHhcCCCCHHHHHh-hhhc---CCceEEEecCcCcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCh
Confidence            344456888877666 4433   377899999977899999976545789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++........                                                     
T Consensus       127 ~ni~~~~~~~~~l~d~g~~~~~~~~~~-----------------------------------------------------  153 (282)
T cd07829         127 QNILINRDGVLKLADFGLARAFGIPLR-----------------------------------------------------  153 (282)
T ss_pred             heEEEcCCCCEEEecCCcccccCCCcc-----------------------------------------------------
Confidence            999999999999999999854321100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-CCCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ......++.+|+|||.+.+. .++.++|||||||++|||++  
T Consensus       154 -------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~  196 (282)
T cd07829         154 -------------------------------------TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGK  196 (282)
T ss_pred             -------------------------------------ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCC
Confidence                                                 00011457789999998776 68999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhc-------------------cCCCC--------hhhhccChhhHHHHHHccCCCCCCCCCHHHH
Q 002736          268 -PFSTGEEKTRTMSSLR-------------------HRVLP--------PQLLLKFPKEASFCLWLLHPEPSGRPKMGEL  319 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~-------------------~~~~~--------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ei  319 (886)
                       ||..............                   ...++        .........+.+++.+||..+|.+||++.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~  276 (282)
T cd07829         197 PLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEA  276 (282)
T ss_pred             CCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHH
Confidence             5543332211111000                   00000        1111234568899999999999999999999


Q ss_pred             hcCCCC
Q 002736          320 LQSEFL  325 (886)
Q Consensus       320 l~h~~~  325 (886)
                      +.||||
T Consensus       277 l~~p~~  282 (282)
T cd07829         277 LKHPYF  282 (282)
T ss_pred             hhCcCC
Confidence            999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.92  E-value=3.5e-25  Score=239.25  Aligned_cols=203  Identities=19%  Similarity=0.224  Sum_probs=151.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+...+|++.+..++ ++.+. ..+..+++|||.+++|.+++.+....+++.+++.++.||+.||.|||++|++|+||||
T Consensus        51 ~l~~l~~~~i~~~~~-~~~~~-~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p  128 (287)
T cd07840          51 LLQKLRHPNIVRLKE-IVTSK-GKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKG  128 (287)
T ss_pred             HHHhccCCCeeehee-eEecC-CCCcEEEEeccccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcH
Confidence            334456888877666 44432 1367899999977899999966556789999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++.........                                                    
T Consensus       129 ~nil~~~~~~~~l~d~g~~~~~~~~~~~----------------------------------------------------  156 (287)
T cd07840         129 SNILINNDGVLKLADFGLARPYTKRNSA----------------------------------------------------  156 (287)
T ss_pred             HHeEEcCCCCEEEccccceeeccCCCcc----------------------------------------------------
Confidence            9999999999999999998543211000                                                    


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                           ..+...++.+|+|||.+.+ ..++.++|||||||++|||++  
T Consensus       157 -------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~  199 (287)
T cd07840         157 -------------------------------------DYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGK  199 (287)
T ss_pred             -------------------------------------cccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCC
Confidence                                                 0011256788999998765 358999999999999999999  


Q ss_pred             -CCCCCchhhHHhHhhccC---C----------------------CC----hhhhc-cChhhHHHHHHccCCCCCCCCCH
Q 002736          268 -PFSTGEEKTRTMSSLRHR---V----------------------LP----PQLLL-KFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       268 -pf~~~~~~~~~~~~~~~~---~----------------------~~----~~~~~-~~~~~~~li~~~L~~dP~~Rps~  316 (886)
                       ||........ ...+...   .                      .+    ..... .++.+.+++.+||..+|.+||++
T Consensus       200 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~  278 (287)
T cd07840         200 PIFQGSTELEQ-LEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISA  278 (287)
T ss_pred             CCCCCCChHHH-HHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCH
Confidence             6654443221 1111100   0                      00    01111 25677899999999999999999


Q ss_pred             HHHhcCCCC
Q 002736          317 GELLQSEFL  325 (886)
Q Consensus       317 ~eil~h~~~  325 (886)
                      .++++||||
T Consensus       279 ~~~l~~~~~  287 (287)
T cd07840         279 DQALQHEYF  287 (287)
T ss_pred             HHHhhCcCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.92  E-value=2.6e-25  Score=236.17  Aligned_cols=197  Identities=15%  Similarity=0.187  Sum_probs=148.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+...+|++++..++ ++.   ....++++||| .+++|.+++......+++..++.++.||+.||.|||++||+|+|||
T Consensus        52 ~l~~l~~~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~  127 (256)
T cd05112          52 VMMKLSHPKLVQLYG-VCT---ERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLA  127 (256)
T ss_pred             HHHhCCCCCeeeEEE-EEc---cCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccc
Confidence            344457888888766 333   34568889998 8899999996655678999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||.+.........                                                   
T Consensus       128 p~ni~i~~~~~~~l~d~g~~~~~~~~~~~---------------------------------------------------  156 (256)
T cd05112         128 ARNCLVGENQVVKVSDFGMTRFVLDDQYT---------------------------------------------------  156 (256)
T ss_pred             cceEEEcCCCeEEECCCcceeecccCccc---------------------------------------------------
Confidence            99999999999999999988543211000                                                   


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       157 --------------------------------------~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g  198 (256)
T cd05112         157 --------------------------------------SSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEG  198 (256)
T ss_pred             --------------------------------------ccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCC
Confidence                                                  0000133567999999988889999999999999999997  


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||..... ......+.....+......+..+.+|+.+||+.+|.+||++.++++
T Consensus       199 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~  253 (256)
T cd05112         199 KTPYENRSN-SEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLH  253 (256)
T ss_pred             CCCCCcCCH-HHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence              6644332 2333333332222222224567789999999999999999999987

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.92  E-value=2e-25  Score=241.61  Aligned_cols=199  Identities=16%  Similarity=0.130  Sum_probs=150.2

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---------------------CCCcChHHHHHH
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------------KRSVDVYECLHI   87 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---------------------~~~l~~~~~~~i   87 (886)
                      ..+...+|++++..++ +|.+   .+.++++||| .+++|.+++...                     ...+++.+++.+
T Consensus        60 ~~l~~l~h~~iv~~~~-~~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  135 (288)
T cd05050          60 ALMAEFDHPNIVKLLG-VCAV---GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCI  135 (288)
T ss_pred             HHHHhcCCCchheEEE-EEcC---CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHH
Confidence            3455568888888776 5543   4568899999 778999999532                     124788899999


Q ss_pred             HHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhccc
Q 002736           88 FRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLR  167 (886)
Q Consensus        88 ~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (886)
                      +.||+.||+|||++||+||||||+||+++.++.++++|||++..........                            
T Consensus       136 ~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~----------------------------  187 (288)
T cd05050         136 AKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK----------------------------  187 (288)
T ss_pred             HHHHHHHHHHHHhCCeecccccHhheEecCCCceEECccccceecccCcccc----------------------------
Confidence            9999999999999999999999999999999999999999985432110000                            


Q ss_pred             ccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC
Q 002736          168 REDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA  247 (886)
Q Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~  247 (886)
                                                                                  .......+..|+|||.+.+.
T Consensus       188 ------------------------------------------------------------~~~~~~~~~~y~aPE~~~~~  207 (288)
T cd05050         188 ------------------------------------------------------------ASENDAIPIRWMPPESIFYN  207 (288)
T ss_pred             ------------------------------------------------------------ccCCCccChhhcCHHHHhcC
Confidence                                                                        00001234569999999888


Q ss_pred             CCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          248 PVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       248 ~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      .++.++|||||||++|||++    ||...... .....+.....++.....++.+.+|+.+||..+|.+||++.|+++
T Consensus       208 ~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         208 RYTTESDVWAYGVVLWEIFSYGMQPYYGMAHE-EVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            89999999999999999986    66544333 333334433333333455678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.92  E-value=3.2e-25  Score=240.23  Aligned_cols=199  Identities=16%  Similarity=0.175  Sum_probs=150.1

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-----------------------CCCcChHHHH
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-----------------------KRSVDVYECL   85 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-----------------------~~~l~~~~~~   85 (886)
                      ..+...+|++++.+++ .|.   ..+..+++||| .+++|.+++.+.                       ...+++..+.
T Consensus        55 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  130 (290)
T cd05045          55 NLLKQVNHPHVIKLYG-ACS---QDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLI  130 (290)
T ss_pred             HHHhhCCCCCEeeEEE-EEe---cCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHH
Confidence            3445567888888776 443   34567888888 779999988431                       1357889999


Q ss_pred             HHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhc
Q 002736           86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTR  165 (886)
Q Consensus        86 ~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (886)
                      .++.||+.||.|||++||+||||||+|||++.++.+|++|||+++........                           
T Consensus       131 ~i~~~i~~~l~~LH~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~---------------------------  183 (290)
T cd05045         131 SFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSY---------------------------  183 (290)
T ss_pred             HHHHHHHHHHHHHHHCCeehhhhhhheEEEcCCCcEEeccccccccccCccch---------------------------
Confidence            99999999999999999999999999999999999999999998543111000                           


Q ss_pred             ccccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccC
Q 002736          166 LRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA  245 (886)
Q Consensus       166 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~  245 (886)
                                                                                   .......++..|+|||.+.
T Consensus       184 -------------------------------------------------------------~~~~~~~~~~~y~apE~~~  202 (290)
T cd05045         184 -------------------------------------------------------------VKRSKGRIPVKWMAIESLF  202 (290)
T ss_pred             -------------------------------------------------------------hcccCCCCCccccCHHHHc
Confidence                                                                         0000013456799999998


Q ss_pred             CCCCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          246 GAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       246 ~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +..++.++|||||||++|||++    ||... ........+.....++........+.+|+.+||+.+|.+||++.++++
T Consensus       203 ~~~~~~~~Di~slG~~l~el~t~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         203 DHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI-APERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             cCCcchHhHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            8889999999999999999996    56433 333344444443333344456678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.92  E-value=5.1e-25  Score=235.75  Aligned_cols=196  Identities=16%  Similarity=0.160  Sum_probs=142.1

Q ss_pred             cccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC---CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           33 THGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~---~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ...+|++++..++ .|.   ....++++||| .+++|.+++.+.   ...+++..++.++.||+.||+|||++||+||||
T Consensus        50 ~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~di  125 (268)
T cd05086          50 RILQHPNILQCLG-QCV---EAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDL  125 (268)
T ss_pred             hccCCcchhheEE-Eec---CCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCC
Confidence            3467889988777 444   34678999999 788999999643   234577788999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++.++++|||++.........                                                  
T Consensus       126 kp~nil~~~~~~~~l~Dfg~~~~~~~~~~~--------------------------------------------------  155 (268)
T cd05086         126 ALRNCFLTSDLTVKVGDYGIGPSRYKEDYI--------------------------------------------------  155 (268)
T ss_pred             ccceEEEcCCccEEecccccccccCcchhh--------------------------------------------------
Confidence            999999999999999999987422110000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-------CCCCcccccchHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-------APVSCASDIYRLGVL  261 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-------~~~s~~sDIwSlGvi  261 (886)
                                                            .......++..|+|||++..       ..++.++|||||||+
T Consensus       156 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~  197 (268)
T cd05086         156 --------------------------------------ETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVT  197 (268)
T ss_pred             --------------------------------------hcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHH
Confidence                                                  00011256788999998753       235789999999999


Q ss_pred             HHHHhc----CCCCCchhhHHhHhhccCC---C-ChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRV---L-PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       262 l~eLl~----pf~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +|||++    ||............+....   . +.......+.+.+++..|+ .+|.+||+++++++
T Consensus       198 l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         198 LWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHH
Confidence            999996    6654443333322222221   1 2222234566778999999 67999999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=2.6e-25  Score=241.60  Aligned_cols=199  Identities=17%  Similarity=0.173  Sum_probs=146.7

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-----------CCcChHHHHHHHHHHHHHHHhh
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-----------RSVDVYECLHIFRQIVEIVYAA   98 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-----------~~l~~~~~~~i~~qi~~~l~~l   98 (886)
                      .+...+|++++..++ ++.   ..+..+++||| .+++|.+++....           ..+++..++.++.||+.||.||
T Consensus        70 ~l~~l~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~l  145 (295)
T cd05097          70 IMSRLKNPNIIRLLG-VCV---SDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYL  145 (295)
T ss_pred             HHHhCCCCCcCeEEE-EEc---CCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            455567888888777 443   34567889998 8899999985421           2368889999999999999999


Q ss_pred             cccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCC
Q 002736           99 HSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT  178 (886)
Q Consensus        99 Hs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  178 (886)
                      |++||+||||||+||+++.++.+|++|||++.........                                        
T Consensus       146 H~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~----------------------------------------  185 (295)
T cd05097         146 ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYY----------------------------------------  185 (295)
T ss_pred             HhcCeeccccChhhEEEcCCCcEEecccccccccccCcce----------------------------------------
Confidence            9999999999999999999999999999998543111000                                        


Q ss_pred             CccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchH
Q 002736          179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRL  258 (886)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSl  258 (886)
                                                                      .......++..|+|||.+.+..++.++|||||
T Consensus       186 ------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSl  217 (295)
T cd05097         186 ------------------------------------------------RIQGRAVLPIRWMAWESILLGKFTTASDVWAF  217 (295)
T ss_pred             ------------------------------------------------eccCcCcCceeecChhhhccCCcCchhhHHHH
Confidence                                                            00011245678999999988889999999999


Q ss_pred             HHHHHHHhc-----CCCCCchhhHHhHhh---c---cCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          259 GVLLFELFC-----PFSTGEEKTRTMSSL---R---HRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       259 Gvil~eLl~-----pf~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ||++|||++     ||.............   .   ...........++.+.+|+.+||..+|.+||++.++++
T Consensus       218 G~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         218 GVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             HHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            999999987     664433322211111   0   11112223335577889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.92  E-value=3.4e-25  Score=236.78  Aligned_cols=198  Identities=21%  Similarity=0.247  Sum_probs=151.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .+++|.+++..   ....+++..+..++.||+.||.|||++||+|
T Consensus        54 ~~l~~l~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H  129 (267)
T cd08228          54 DLLKQLNHPNVIKYLD-SFI---EDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMH  129 (267)
T ss_pred             HHHHhCCCcceeeeee-eEE---ECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeC
Confidence            3455668888888776 333   24678889999 77899988842   2345899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      +||||+||+++.++.++++|||++........                                                
T Consensus       130 ~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~------------------------------------------------  161 (267)
T cd08228         130 RDIKPANVFITATGVVKLGDLGLGRFFSSKTT------------------------------------------------  161 (267)
T ss_pred             CCCCHHHEEEcCCCCEEECccccceeccchhH------------------------------------------------
Confidence            99999999999999999999998854321100                                                


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                ......|++.|+|||.+.+..++.++|||||||++|||
T Consensus       162 ------------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el  199 (267)
T cd08228         162 ------------------------------------------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM  199 (267)
T ss_pred             ------------------------------------------HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHH
Confidence                                                      00012578889999999888899999999999999999


Q ss_pred             hc---CCCCCchh-hHHhHhhccCCCChhh-hccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          266 FC---PFSTGEEK-TRTMSSLRHRVLPPQL-LLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       266 l~---pf~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ++   ||...... ......+.....++.. ......+.+++.+||..+|.+||++.++++
T Consensus       200 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~  260 (267)
T cd08228         200 AALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQ  260 (267)
T ss_pred             hcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHH
Confidence            98   77544322 2333333333333333 234567889999999999999999999987

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.92  E-value=3.7e-25  Score=236.38  Aligned_cols=197  Identities=20%  Similarity=0.257  Sum_probs=151.5

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      .+...+|++++..++ .+.   ..+.++++||| .|++|.+++..   ....+++..++.++.||+.||.|||+.||+||
T Consensus        55 ~l~~~~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~  130 (267)
T cd08224          55 LLKQLDHPNVIKYLA-SFI---ENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHR  130 (267)
T ss_pred             HHHhCCCCCeeeeee-eee---cCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecC
Confidence            445567888877776 332   24678899999 78899998843   34568999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++.++.++++|||++........                                                 
T Consensus       131 dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~-------------------------------------------------  161 (267)
T cd08224         131 DIKPANVFITATGVVKLGDLGLGRFFSSKTT-------------------------------------------------  161 (267)
T ss_pred             CcChhhEEECCCCcEEEeccceeeeccCCCc-------------------------------------------------
Confidence            9999999999999999999998853321100                                                 


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ......++..|+|||.+.+..++.++|||||||++|+|+
T Consensus       162 -----------------------------------------~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~  200 (267)
T cd08224         162 -----------------------------------------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMA  200 (267)
T ss_pred             -----------------------------------------ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHH
Confidence                                                     001125688899999998888999999999999999999


Q ss_pred             c---CCCCCch-hhHHhHhhccCCCChhhh-ccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          267 C---PFSTGEE-KTRTMSSLRHRVLPPQLL-LKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       267 ~---pf~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +   ||..... .......+.....++.+. .....+.+++.+||..+|.+||++.++++
T Consensus       201 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         201 ALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             HCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            8   7644432 223333444444444433 45567889999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.9e-26  Score=257.50  Aligned_cols=204  Identities=20%  Similarity=0.240  Sum_probs=167.2

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-------------CCCcChHHHHHH
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-------------KRSVDVYECLHI   87 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-------------~~~l~~~~~~~i   87 (886)
                      .||.|.  -.++..+|+|+|+++| +|.   +.+++|+++|| ..|+|.+||+..             ...++..+.++|
T Consensus       535 dF~REa--eLla~l~H~nIVrLlG-VC~---~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~i  608 (774)
T KOG1026|consen  535 DFRREA--ELLAELQHPNIVRLLG-VCR---EGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHI  608 (774)
T ss_pred             HHHHHH--HHHHhccCCCeEEEEE-EEc---cCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHH
Confidence            455554  4567779999999998 886   46899999999 889999999532             123788999999


Q ss_pred             HHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhccc
Q 002736           88 FRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLR  167 (886)
Q Consensus        88 ~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (886)
                      +.||+.|++||-++.+|||||-..|.||.+.-.|||+|||++++.=+.+..                      +-+    
T Consensus       609 A~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYY----------------------k~~----  662 (774)
T KOG1026|consen  609 ATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYY----------------------KVR----  662 (774)
T ss_pred             HHHHHHHHHHHHhCcccccchhhhhceeccceEEEecccccchhhhhhhhh----------------------ccc----
Confidence            999999999999999999999999999999999999999999765222110                      000    


Q ss_pred             ccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC
Q 002736          168 REDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA  247 (886)
Q Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~  247 (886)
                                                           .+.                         +=.-.|||||.|..+
T Consensus       663 -------------------------------------~~t-------------------------~lPIRWMppEsIly~  680 (774)
T KOG1026|consen  663 -------------------------------------GNT-------------------------LLPIRWMPPESILYG  680 (774)
T ss_pred             -------------------------------------CCc-------------------------eeeeecCCHHHhhcC
Confidence                                                 000                         113459999999999


Q ss_pred             CCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHh
Q 002736          248 PVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELL  320 (886)
Q Consensus       248 ~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil  320 (886)
                      +||++|||||+||+|||+|+    |++.. .+..++..++.+..-+.+..+++++.+|+..||+.+|++||++.||-
T Consensus       681 kFTteSDVWs~GVvLWEIFsyG~QPy~gl-Sn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~  756 (774)
T KOG1026|consen  681 KFTTESDVWSFGVVLWEIFSYGKQPYYGL-SNQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIH  756 (774)
T ss_pred             cccchhhhhhhhhhhhhhhccccCccccc-chHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHH
Confidence            99999999999999999999    77544 45566777777777888889999999999999999999999999974

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.92  E-value=3.1e-25  Score=235.34  Aligned_cols=192  Identities=17%  Similarity=0.136  Sum_probs=147.1

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+.+.+|++++..++ ++..    +.++++||| .|++|.+++... ...+++..+..++.||+.||.|||+.|++||||
T Consensus        52 ~l~~~~~~~i~~~~~-~~~~----~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl  126 (254)
T cd05083          52 VMTKLHHKNLVRLLG-VILH----NGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDL  126 (254)
T ss_pred             HHHhCCCCCcCeEEE-EEcC----CCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccc
Confidence            455678888888776 3332    336888999 788999999654 346899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++.......                                                    
T Consensus       127 ~p~nili~~~~~~kl~Dfg~~~~~~~~~----------------------------------------------------  154 (254)
T cd05083         127 AARNILVSEDGVAKVSDFGLARVGSMGV----------------------------------------------------  154 (254)
T ss_pred             CcceEEEcCCCcEEECCCccceeccccC----------------------------------------------------
Confidence            9999999999999999999884321000                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                               .....+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       155 -----------------------------------------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~  193 (254)
T cd05083         155 -----------------------------------------DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSY  193 (254)
T ss_pred             -----------------------------------------CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhC
Confidence                                                     00022456999999988889999999999999999985 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||....... ....+.....++.....++.+.+++.+||..+|.+||++.+++.
T Consensus       194 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         194 GRAPYPKMSLKE-VKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             CCCCCccCCHHH-HHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence               664443332 22333333333333445677889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.92  E-value=3.4e-25  Score=241.56  Aligned_cols=198  Identities=17%  Similarity=0.122  Sum_probs=149.2

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|+|++..++ .|..    ...++++|| .+++|.+++......+++..+..++.||+.||.|||++||+||||
T Consensus        61 ~~~~~l~h~niv~~~~-~~~~----~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~di  135 (303)
T cd05110          61 LIMASMDHPHLVRLLG-VCLS----PTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDL  135 (303)
T ss_pred             HHHHhCCCCCcccEEE-EEcC----CCceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeecccc
Confidence            3445567888888777 5543    234566777 789999999776667899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||+++.........                                                 
T Consensus       136 kp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~-------------------------------------------------  166 (303)
T cd05110         136 AARNVLVKSPNHVKITDFGLARLLEGDEKEY-------------------------------------------------  166 (303)
T ss_pred             ccceeeecCCCceEEccccccccccCccccc-------------------------------------------------
Confidence            9999999999999999999986432110000                                                 


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       167 ---------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~  207 (303)
T cd05110         167 ---------------------------------------NADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTF  207 (303)
T ss_pred             ---------------------------------------ccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhC
Confidence                                                   0001134677999999988889999999999999999985 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||.... .......+.....++........+.+++..||..+|++||++.++++
T Consensus       208 g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~  263 (303)
T cd05110         208 GGKPYDGIP-TREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAA  263 (303)
T ss_pred             CCCCCCCCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence               664332 22222333333333333445677889999999999999999999876

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.92  E-value=2.1e-25  Score=242.02  Aligned_cols=201  Identities=13%  Similarity=0.100  Sum_probs=143.2

Q ss_pred             ccccccCCCCCCcccccccc-CCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcc
Q 002736           34 HGDHLRNQGGLSGVCENEAA-IDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSC  112 (886)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~N  112 (886)
                      ..+|.+++..++ .+..... ....++++|+...++.+.+... ...++..++.|+.||+.||+|||++||+||||||+|
T Consensus        79 ~~~h~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~N  156 (294)
T PHA02882         79 NIDHLGIPKYYG-CGSFKRCRMYYRFILLEKLVENTKEIFKRI-KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPEN  156 (294)
T ss_pred             cCCCCCCCcEEE-eeeEecCCceEEEEEEehhccCHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHH
Confidence            346777777665 3322211 1233677787777888777543 346888999999999999999999999999999999


Q ss_pred             eeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCc
Q 002736          113 FVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSA  192 (886)
Q Consensus       113 Ill~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (886)
                      ||++..+.++++|||+++...........                                                   
T Consensus       157 ill~~~~~~~l~DFGla~~~~~~~~~~~~---------------------------------------------------  185 (294)
T PHA02882        157 IMVDGNNRGYIIDYGIASHFIIHGKHIEY---------------------------------------------------  185 (294)
T ss_pred             EEEcCCCcEEEEEcCCceeeccCCccccc---------------------------------------------------
Confidence            99999999999999999654321100000                                                   


Q ss_pred             cCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CC
Q 002736          193 YGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PF  269 (886)
Q Consensus       193 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf  269 (886)
                                                      .........||+.|+|||.+.+..++.++|||||||+||||++   ||
T Consensus       186 --------------------------------~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~  233 (294)
T PHA02882        186 --------------------------------SKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPW  233 (294)
T ss_pred             --------------------------------ccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                                            0000111368999999999999889999999999999999998   88


Q ss_pred             CCCchhhHHh--------HhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          270 STGEEKTRTM--------SSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       270 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ..........        ..+.....  .....++.+.+++..|+..+|.+||++.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        234 KGFGHNGNLIHAAKCDFIKRLHEGKI--KIKNANKFIYDFIECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             CccccchHHHHHhHHHHHHHhhhhhh--ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            5553222211        11111111  12234567789999999999999999999876

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.92  E-value=4.6e-25  Score=235.84  Aligned_cols=198  Identities=18%  Similarity=0.226  Sum_probs=150.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCeee
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ..+...+|++++..++ .+.   ..+.++++||| .|++|.+++..   ....+++..++.++.||+.||.|||++||+|
T Consensus        54 ~~l~~~~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H  129 (267)
T cd08229          54 DLLKQLNHPNVIKYYA-SFI---EDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMH  129 (267)
T ss_pred             HHHHHccCCchhhhhh-eeE---eCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeec
Confidence            3445567888888776 332   34578889998 78899998853   2356899999999999999999999999999


Q ss_pred             cccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccc
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  185 (886)
                      +||||+||+++.++.++++|||++........                                                
T Consensus       130 ~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~------------------------------------------------  161 (267)
T cd08229         130 RDIKPANVFITATGVVKLGDLGLGRFFSSKTT------------------------------------------------  161 (267)
T ss_pred             CCCCHHHEEEcCCCCEEECcchhhhccccCCc------------------------------------------------
Confidence            99999999999999999999998854321100                                                


Q ss_pred             ccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHH
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eL  265 (886)
                                                                ......|+..|+|||.+.+..++.++|||||||++|||
T Consensus       162 ------------------------------------------~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l  199 (267)
T cd08229         162 ------------------------------------------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM  199 (267)
T ss_pred             ------------------------------------------ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHH
Confidence                                                      00012578889999999888899999999999999999


Q ss_pred             hc---CCCCCchh-hHHhHhhccCCCChhh-hccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          266 FC---PFSTGEEK-TRTMSSLRHRVLPPQL-LLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       266 l~---pf~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ++   ||...... ......+.....++.. ...++.+.+++.+||..+|.+|||+.++++
T Consensus       200 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         200 AALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             HhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence            99   77544322 2222233322233222 235567889999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.92  E-value=5.4e-25  Score=263.36  Aligned_cols=96  Identities=10%  Similarity=0.109  Sum_probs=82.6

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +....|++++.++. ++.   ..+.+|++||| .|++|.++|... +.+++..++.|+.||+.||+|||++|||||||||
T Consensus        58 l~~l~hp~Iv~~~~-~~~---~~~~~~lVmEy~~g~~L~~li~~~-~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP  132 (669)
T cd05610          58 LALSKSPFIVHLYY-SLQ---SANNVYLVMEYLIGGDVKSLLHIY-GYFDEEMAVKYISEVALALDYLHRHGIIHRDLKP  132 (669)
T ss_pred             HHhcCCCCcCeEEE-EEE---ECCEEEEEEeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccH
Confidence            34557888888776 332   35678999999 699999999654 5689999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCC
Q 002736          111 SCFVMSSFNHVSFIESASCSDS  132 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~  132 (886)
                      +||||+.++.+||+|||+++..
T Consensus       133 ~NILl~~~g~vkL~DFGls~~~  154 (669)
T cd05610         133 DNMLISNEGHIKLTDFGLSKVT  154 (669)
T ss_pred             HHEEEcCCCCEEEEeCCCCccc
Confidence            9999999999999999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.92  E-value=5.1e-25  Score=233.68  Aligned_cols=200  Identities=20%  Similarity=0.244  Sum_probs=156.6

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC---CCCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~---~~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      ...+...+|++++.....++ +   .+.++++||| .+++|.+++.+   ....+++..+..++.||+.||.|||+.||+
T Consensus        50 ~~~l~~l~~~~i~~~~~~~~-~---~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~  125 (256)
T cd08530          50 IRILASVNHPNIISYKEAFL-D---GNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKIL  125 (256)
T ss_pred             HHHHHhCCCCCchhhhhhhc-c---CCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcc
Confidence            34455567888877666222 2   3678899998 78999999854   235689999999999999999999999999


Q ss_pred             ecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      |+||+|+||+++.++.+|++|||++.......                                                
T Consensus       126 h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~------------------------------------------------  157 (256)
T cd08530         126 HRDLKSANILLVANDLVKIGDLGISKVLKKNM------------------------------------------------  157 (256)
T ss_pred             cCCCCcceEEEecCCcEEEeeccchhhhccCC------------------------------------------------
Confidence            99999999999999999999999885432110                                                


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHH
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~e  264 (886)
                                                                  .....+++.|+|||.+.+..++.++|+||||+++||
T Consensus       158 --------------------------------------------~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~  193 (256)
T cd08530         158 --------------------------------------------AKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYE  193 (256)
T ss_pred             --------------------------------------------cccccCCccccCHHHHCCCCCCchhhHHHHHHHHHH
Confidence                                                        000156788999999998889999999999999999


Q ss_pred             Hhc---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCC
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       265 Ll~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~  325 (886)
                      |++   ||...... ...........++.......++.+++.+||..+|.+||++.++++||++
T Consensus       194 l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         194 MATFAPPFEARSMQ-DLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             HHhCCCCCCCCCHH-HHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcCCCC
Confidence            998   66544432 3333334444444444566788999999999999999999999999975

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.92  E-value=5.8e-25  Score=235.29  Aligned_cols=199  Identities=15%  Similarity=0.138  Sum_probs=148.6

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcC------CCCCcChHHHHHHHHHHHHHHHhhcccC
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK------PKRSVDVYECLHIFRQIVEIVYAAHSQG  102 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~------~~~~l~~~~~~~i~~qi~~~l~~lHs~g  102 (886)
                      ..+...+|++++..++ +|.+   .+..+++||| .|++|.++|.+      ....+++.+++.++.||+.||.|||++|
T Consensus        51 ~~l~~l~h~~i~~~~~-~~~~---~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~  126 (269)
T cd05044          51 HLMSNFNHPNIVKLLG-VCLL---NEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH  126 (269)
T ss_pred             HHHHhcCCCCeeeEee-eecC---CCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC
Confidence            3455668888888666 5543   3567889998 88999999953      2234788999999999999999999999


Q ss_pred             eeecccCCcceeeccCC-----ceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCC
Q 002736          103 IVVHNVRPSCFVMSSFN-----HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus       103 iiHrDlkP~NIll~~~~-----~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  177 (886)
                      |+|+||||+||+++..+     .++++|||++..........                                      
T Consensus       127 i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~--------------------------------------  168 (269)
T cd05044         127 FIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYR--------------------------------------  168 (269)
T ss_pred             cccCCCChheEEEecCCCCCCcceEECCcccccccccccccc--------------------------------------
Confidence            99999999999999877     89999999985432110000                                      


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccch
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwS  257 (886)
                                                                        ......++..|+|||.+.+..++.++||||
T Consensus       169 --------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  198 (269)
T cd05044         169 --------------------------------------------------KEGEGLLPVRWMAPESLLDGKFTTQSDVWS  198 (269)
T ss_pred             --------------------------------------------------cCcccCCCccccCHHHHccCCcccchhHHH
Confidence                                                              000013466799999999888999999999


Q ss_pred             HHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          258 LGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       258 lGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |||++|||++    ||..... ......+.....+......++.+.+++.+||..+|.+||++.++++
T Consensus       199 lG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         199 FGVLMWEILTLGQQPYPALNN-QEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             HHHHHHHHHHcCCCCCcccCH-HHHHHHHhcCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            9999999986    6643333 2333333333233333445677889999999999999999999875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3e-24  Score=224.98  Aligned_cols=265  Identities=22%  Similarity=0.289  Sum_probs=219.9

Q ss_pred             ccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEec-CCC
Q 002736          540 FLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA-SRS  618 (886)
Q Consensus       540 ~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~-~~~  618 (886)
                      ...|-|||||++.-.-+.-..+-+..+..+.|+++.+.|||+-|++||.-.++.|||+........      .+.. ..-
T Consensus       437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik------aeltssap  510 (705)
T KOG0639|consen  437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK------AELTSSAP  510 (705)
T ss_pred             cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchh------hhcCCcch
Confidence            347889999998653332223345667789999999999999999999999999999986322111      1111 223


Q ss_pred             CeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhc
Q 002736          619 KLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLH  698 (886)
Q Consensus       619 ~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~  698 (886)
                      .+.+++.+| +....++|..||.|.|||+.....++.|++|.+.+.||++++ ++..|-+|+-|.+|+.||+++      
T Consensus       511 aCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlre------  582 (705)
T KOG0639|consen  511 ACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLRE------  582 (705)
T ss_pred             hhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhh------
Confidence            466788898 677888888899999999999999999999999999999997 999999999999999999999      


Q ss_pred             cCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEE
Q 002736          699 LGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLK  777 (886)
Q Consensus       699 ~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~  777 (886)
                       +..+........|.++.++|. +.++++|-.++.|-+...+...  ...+.-|...|.+++|. .|++++|.+.|+-+.
T Consensus       583 -grqlqqhdF~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~--kyqlhlheScVLSlKFa~cGkwfvStGkDnlLn  658 (705)
T KOG0639|consen  583 -GRQLQQHDFSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPE--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  658 (705)
T ss_pred             -hhhhhhhhhhhhheecccCCC-ccceeeecccCcEEEEecCCcc--ceeecccccEEEEEEecccCceeeecCchhhhh
Confidence             665666666788999999999 8999999999988887766554  67788899999999997 999999999999999


Q ss_pred             EEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEec
Q 002736          778 LWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK  829 (886)
Q Consensus       778 lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~  829 (886)
                      .|.+.-+..      +...+ ..+.|.++.+|.+++||+|||.|....||.+
T Consensus       659 awrtPyGas------iFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  659 AWRTPYGAS------IFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             hccCccccc------eeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999887732      33333 4567999999999999999999999999975

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.92  E-value=3.4e-25  Score=239.22  Aligned_cols=203  Identities=21%  Similarity=0.167  Sum_probs=147.0

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+....|++++.+++ ++.. .....++++||| .+++|.+++.+....+++..++.++.||+.||.|||++||+||||
T Consensus        57 ~~l~~l~h~~iv~~~~-~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dl  134 (284)
T cd05081          57 EILKSLQHDNIVKYKG-VCYS-AGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDL  134 (284)
T ss_pred             HHHHhCCCCCeeEEEE-EEcc-CCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccC
Confidence            3455668888887665 4433 233467899999 789999999665456899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++.........  .                               .               
T Consensus       135 kp~nili~~~~~~~l~dfg~~~~~~~~~~~--~-------------------------------~---------------  166 (284)
T cd05081         135 ATRNILVESENRVKIGDFGLTKVLPQDKEY--Y-------------------------------K---------------  166 (284)
T ss_pred             CHhhEEECCCCeEEECCCcccccccCCCcc--e-------------------------------e---------------
Confidence            999999999999999999998543211000  0                               0               


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       167 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~  207 (284)
T cd05081         167 ---------------------------------------VREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY  207 (284)
T ss_pred             ---------------------------------------ecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhc
Confidence                                                   0000023445999999988889999999999999999998 


Q ss_pred             --CCCCCchhh---------------HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKT---------------RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ++.......               .....+.....++.....+..+.+|+.+||..+|++|||+.|+++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         208 SDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             CCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence              221111000               001111122222333345567889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.92  E-value=5.9e-25  Score=238.89  Aligned_cols=199  Identities=17%  Similarity=0.172  Sum_probs=145.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC----------CCcChHHHHHHHHHHHHHHHhhc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK----------RSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~----------~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .+....|++++..++ ++.   ..+.++++||| .+++|.+++.+..          ..+++..+..++.||+.||+|||
T Consensus        72 ~l~~l~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH  147 (296)
T cd05095          72 IMSRLKDPNIIRLLA-VCI---TSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS  147 (296)
T ss_pred             HHHhCCCCCcceEEE-EEe---cCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence            345567888887766 443   34567899998 7889999985421          24677899999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.++++|||++..........                                        
T Consensus       148 ~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~----------------------------------------  187 (296)
T cd05095         148 SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYR----------------------------------------  187 (296)
T ss_pred             HCCeecccCChheEEEcCCCCEEeccCcccccccCCccee----------------------------------------
Confidence            9999999999999999999999999999985432110000                                        


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||...+..++.++||||||
T Consensus       188 ------------------------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG  219 (296)
T cd05095         188 ------------------------------------------------IQGRAVLPIRWMSWESILLGKFTTASDVWAFG  219 (296)
T ss_pred             ------------------------------------------------ccCcCcCccccCCHHHHhcCCccchhhhhHHH
Confidence                                                            00011345679999998888899999999999


Q ss_pred             HHHHHHhc-----CCCCCchhhHHhHh---h---ccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC-----PFSTGEEKTRTMSS---L---RHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~-----pf~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|||++     ||............   .   ......+.....++.+.+|+.+||..||.+||++.++++
T Consensus       220 ~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         220 VTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             HHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            99999996     66443332221111   0   111122233345577889999999999999999999875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.92  E-value=4.3e-25  Score=235.13  Aligned_cols=196  Identities=15%  Similarity=0.163  Sum_probs=149.2

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ +.    ..+.++++||| .+++|.+++.+. ...+++.++..++.||+.||.|||+.||+||||
T Consensus        54 ~l~~l~h~~i~~~~~-~~----~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl  128 (260)
T cd05067          54 LMKQLQHPRLVRLYA-VV----TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDL  128 (260)
T ss_pred             HHHhcCCcCeeeEEE-EE----ccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccc
Confidence            444557888888766 33    23457888998 789999998543 356899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||++.........                                                  
T Consensus       129 ~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~--------------------------------------------------  158 (260)
T cd05067         129 RAANILVSETLCCKIADFGLARLIEDNEYT--------------------------------------------------  158 (260)
T ss_pred             cHHhEEEcCCCCEEEccCcceeecCCCCcc--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       159 ---------------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~  199 (260)
T cd05067         159 ---------------------------------------AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTY  199 (260)
T ss_pred             ---------------------------------------cccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhC
Confidence                                                   0001134567999999988889999999999999999997 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||.... .......+.....++.....+..+.+++.+||..+|++||++++++.
T Consensus       200 g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         200 GRIPYPGMT-NPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             CCCCCCCCC-hHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence               664433 33333334333333434445567889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=3.3e-25  Score=234.48  Aligned_cols=80  Identities=15%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             cCCCCCCccccccccCCceEEEEeeCCcchhhhhcC-CCCCcChHHHHHHHHHHHHHHHhhccc-CeeecccCCcceeec
Q 002736           39 RNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAAHSQ-GIVVHNVRPSCFVMS  116 (886)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~-~~~~l~~~~~~~i~~qi~~~l~~lHs~-giiHrDlkP~NIll~  116 (886)
                      -+|+++.-+--...+..++|+|+|+.|-+|..||++ ..+.++...++.|++||+.||+|||.+ ||||.||||+||||.
T Consensus       143 ~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  143 CVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLC  222 (590)
T ss_pred             eeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeee
Confidence            345544422233456678999999999999999954 457899999999999999999999976 999999999999996


Q ss_pred             cC
Q 002736          117 SF  118 (886)
Q Consensus       117 ~~  118 (886)
                      ..
T Consensus       223 ~~  224 (590)
T KOG1290|consen  223 ST  224 (590)
T ss_pred             cc
Confidence            54

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=5.6e-25  Score=234.33  Aligned_cols=197  Identities=14%  Similarity=0.152  Sum_probs=150.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ ++.   ....++++||| .+++|.+++.+.. ..+++..++.++.||+.||.|||++||+|+||
T Consensus        54 ~l~~l~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di  129 (261)
T cd05034          54 IMKKLRHDKLVQLYA-VCS---EEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDL  129 (261)
T ss_pred             HHhhCCCCCEeeeee-eee---cCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCc
Confidence            344567888888776 333   33568889998 7899999996543 57899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||++.........                                                  
T Consensus       130 ~p~nili~~~~~~~l~d~g~~~~~~~~~~~--------------------------------------------------  159 (261)
T cd05034         130 AARNILVGENLVCKIADFGLARLIEDDEYT--------------------------------------------------  159 (261)
T ss_pred             chheEEEcCCCCEEECccccceeccchhhh--------------------------------------------------
Confidence            999999999999999999998543211000                                                  


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             .......+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       160 ---------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~  200 (261)
T cd05034         160 ---------------------------------------AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTY  200 (261)
T ss_pred             ---------------------------------------hhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhC
Confidence                                                   0000023456999999998889999999999999999997 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||.... .......+......+.....+..+.+++.+||..+|.+||++.++++
T Consensus       201 g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         201 GRVPYPGMT-NREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             CCCCCCCCC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence               664433 33333444433333334445677889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=4.9e-25  Score=237.33  Aligned_cols=200  Identities=15%  Similarity=0.109  Sum_probs=151.9

Q ss_pred             CceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeec
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +...+...+|++++..++ +|..    ..++++||| .+++|.+++.+....+++..+..++.||+.||.|||++||+||
T Consensus        59 e~~~l~~l~h~~i~~~~~-~~~~----~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~  133 (279)
T cd05057          59 EAYVMASVDHPHVVRLLG-ICLS----SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHR  133 (279)
T ss_pred             HHHHHHhCCCCCcceEEE-EEec----CceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEec
Confidence            334455568888888776 5653    567788888 8899999997766678999999999999999999999999999


Q ss_pred             ccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccc
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  186 (886)
                      ||||+||+++.++.+|++|||+++........  .                                             
T Consensus       134 di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~--~---------------------------------------------  166 (279)
T cd05057         134 DLAARNVLVKTPQHVKITDFGLAKLLDVDEKE--Y---------------------------------------------  166 (279)
T ss_pred             ccCcceEEEcCCCeEEECCCcccccccCcccc--e---------------------------------------------
Confidence            99999999999999999999998644211000  0                                             


Q ss_pred             cccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHh
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl  266 (886)
                                                               ......++..|+|||.+....++.++|||||||++|||+
T Consensus       167 -----------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~  205 (279)
T cd05057         167 -----------------------------------------HAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELM  205 (279)
T ss_pred             -----------------------------------------ecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHh
Confidence                                                     000002345699999998888999999999999999999


Q ss_pred             c----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          267 C----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       267 ~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +    ||....... ....+......+........+.+++.+||..+|..||++.++++
T Consensus       206 ~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         206 TFGAKPYEGIPAVE-IPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             cCCCCCCCCCCHHH-HHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            6    665443332 23333333333333445677889999999999999999999865

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.92  E-value=7.4e-25  Score=237.34  Aligned_cols=199  Identities=18%  Similarity=0.214  Sum_probs=149.3

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++.++. .+.   ....++++||| .+++|.++|... ..+++..+..++.||+.||.|||++||+||||||+|||
T Consensus        63 ~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil  137 (290)
T cd05613          63 QSPFLVTLHY-AFQ---TDTKLHLILDYINGGELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENIL  137 (290)
T ss_pred             cCCChhceee-Eee---cCCeEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeE
Confidence            5677776655 222   23568899999 888999999654 56899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+|++|||++.........                                                        
T Consensus       138 ~~~~~~~kl~dfg~~~~~~~~~~~--------------------------------------------------------  161 (290)
T cd05613         138 LDSNGHVVLTDFGLSKEFHEDEVE--------------------------------------------------------  161 (290)
T ss_pred             ECCCCCEEEeeCccceeccccccc--------------------------------------------------------
Confidence            999999999999998543211000                                                        


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC--CCCcccccchHHHHHHHHhc---CC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA--PVSCASDIYRLGVLLFELFC---PF  269 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~--~~s~~sDIwSlGvil~eLl~---pf  269 (886)
                                                       ......|+..|+|||.+.+.  .++.++|||||||++|+|++   ||
T Consensus       162 ---------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~  208 (290)
T cd05613         162 ---------------------------------RAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPF  208 (290)
T ss_pred             ---------------------------------ccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCC
Confidence                                             00112678899999998753  47889999999999999999   66


Q ss_pred             CCCchh---hHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCC-----CHHHHhcCCCCCCCc
Q 002736          270 STGEEK---TRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       270 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~eil~h~~~~~~~  329 (886)
                      ......   ......+.. ..++......+.+.+++.+||..+|.+||     ++.+++.||||....
T Consensus       209 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  275 (290)
T cd05613         209 TVDGEKNSQAEISRRILK-SEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKIN  275 (290)
T ss_pred             CcCCccccHHHHHHHhhc-cCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCC
Confidence            432211   111111111 12223334567788999999999999997     899999999998764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=2.7e-24  Score=221.43  Aligned_cols=266  Identities=17%  Similarity=0.239  Sum_probs=217.6

Q ss_pred             cccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      .+.+.+|..|..|++|+..-.+  .++ .+.+.+..++|++++|++++.++++++.|+.+++|++.....       ...
T Consensus       187 sdtlatgg~Dr~Ik~W~v~~~k--~~~-~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~-------~~T  256 (459)
T KOG0288|consen  187 SDTLATGGSDRIIKLWNVLGEK--SEL-ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL-------RHT  256 (459)
T ss_pred             cchhhhcchhhhhhhhhcccch--hhh-hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh-------hhh
Confidence            3667888999999999977655  223 355677889999999999999999999999999999876311       112


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCch
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~  692 (886)
                      ..+|..+|+++.|.. ....+++|+.|.+|++||+....+.+++- ....+++|..+   +..+++|-.|++|++||+++
T Consensus       257 LsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs  331 (459)
T KOG0288|consen  257 LSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS  331 (459)
T ss_pred             hcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccceEEEeccC
Confidence            345999999999986 34449999999999999999988776653 24456666654   56889999999999999999


Q ss_pred             hhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEecC----CCCeEEEEec-CCCEE
Q 002736          693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH----NKTVSYVKFV-DATTL  767 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h----~~~V~~v~f~-~~~~l  767 (886)
                             ......++..+.|+++..+++ +..+.+++.|.++.+.|+|+... ...+.+.    ....+.+.|+ ++.|+
T Consensus       332 -------~~~~~sv~~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDwtrvvfSpd~~Yv  402 (459)
T KOG0288|consen  332 -------ADKTRSVPLGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTRVVFSPDGSYV  402 (459)
T ss_pred             -------CceeeEeecCcceeeEeeccC-CeEEeeecCCCceeeeecccccE-EEEeeccccccccccceeEECCCCcee
Confidence                   788888888899999999999 88888889999999999999874 4444321    1237889997 99999


Q ss_pred             EEEECCCcEEEEeCCCCCccccCCCceEeecCCC--ceeEEEEecCCCEEEEEcCCCcEEEEe
Q 002736          768 VSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN--VKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       768 ~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~--~v~~v~~sp~g~~lasgs~Dg~v~iwd  828 (886)
                      ++||.||.|+||++.+++.      ...+.....  .|++++|+|.|.++++++.++.+++|.
T Consensus       403 aAGS~dgsv~iW~v~tgKl------E~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  403 AAGSADGSVYIWSVFTGKL------EKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eeccCCCcEEEEEccCceE------EEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9999999999999999854      444544333  599999999999999999999999993

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.92  E-value=6.7e-25  Score=235.69  Aligned_cols=197  Identities=19%  Similarity=0.219  Sum_probs=148.3

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC--------CCcChHHHHHHHHHHHHHHHhhccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK--------RSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~--------~~l~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      .+...+|++++..++ .+.+   .+.++++||| .+++|.+++....        ..+++..++.++.||+.||.|||++
T Consensus        61 ~l~~l~h~~iv~~~~-~~~~---~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~  136 (275)
T cd05046          61 MFRKLSHKNVVRLLG-LCRE---AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA  136 (275)
T ss_pred             HHHhcCCcceeeeEE-EECC---CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc
Confidence            455567888877666 4433   4568899999 7799999995432        1589999999999999999999999


Q ss_pred             CeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcc
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  181 (886)
                      ||+||||||+||+++..+.++++|||++.........                                           
T Consensus       137 ~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~-------------------------------------------  173 (275)
T cd05046         137 RFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYY-------------------------------------------  173 (275)
T ss_pred             CcccCcCccceEEEeCCCcEEEcccccccccCccccc-------------------------------------------
Confidence            9999999999999999999999999987532111000                                           


Q ss_pred             ccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHH
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvi  261 (886)
                                                                    ......++..|+|||.+.+..++.++|||||||+
T Consensus       174 ----------------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~  207 (275)
T cd05046         174 ----------------------------------------------KLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVL  207 (275)
T ss_pred             ----------------------------------------------ccCCceeEEeecChhhhccCCCCchhhHHHHHHH
Confidence                                                          0001145667999999988888999999999999


Q ss_pred             HHHHhc----CCCCCchhhHHhHhhccCCC-ChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRVL-PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       262 l~eLl~----pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      +|+|++    ||...... ........... .+.....+..+.+++.+||..+|.+||++.|++.
T Consensus       208 l~~l~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~  271 (275)
T cd05046         208 MWEVFTQGELPFYGLSDE-EVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVS  271 (275)
T ss_pred             HHHHHhCCCCCccccchH-HHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            999997    66443333 23333332222 2222345567889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=7.4e-25  Score=232.69  Aligned_cols=193  Identities=15%  Similarity=0.137  Sum_probs=148.9

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-CCcChHHHHHHHHHHHHHHHhhcccCeeeccc
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      .+...+|++++..++ ++.+   .+.++++||| .+++|.+++.+.. ..+++..+..++.||+.||.|||++||+|+||
T Consensus        53 ~l~~l~~~~i~~~~~-~~~~---~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di  128 (256)
T cd05039          53 VMTTLRHPNLVQLLG-VVLQ---GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDL  128 (256)
T ss_pred             HHHhcCCcceeeeEE-EEcC---CCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhc
Confidence            444567888887666 4443   5678899998 6789999996543 36899999999999999999999999999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.+|++|||.++......                                                    
T Consensus       129 ~p~Nili~~~~~~~l~d~g~~~~~~~~~----------------------------------------------------  156 (256)
T cd05039         129 AARNVLVSEDLVAKVSDFGLAKEASQGQ----------------------------------------------------  156 (256)
T ss_pred             ccceEEEeCCCCEEEccccccccccccc----------------------------------------------------
Confidence            9999999999999999999985431100                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                               ....++..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       157 -----------------------------------------~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~  195 (256)
T cd05039         157 -----------------------------------------DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSF  195 (256)
T ss_pred             -----------------------------------------ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhc
Confidence                                                     00123456999999988889999999999999999986 


Q ss_pred             ---CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                         ||... ........+.....+......++.+.+++.+||..+|.+||++.++++
T Consensus       196 g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         196 GRVPYPRI-PLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             CCCCCCCC-CHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence               55433 333333333333333333445678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=4.6e-23  Score=203.47  Aligned_cols=292  Identities=22%  Similarity=0.299  Sum_probs=219.2

Q ss_pred             cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCcccCccc----ccc----cceEEecCCCCeeeEEEeCCCCCeEEE
Q 002736          565 LNSSNLVCSLSFDR-DGELFAAAGVNKKIKVFECDAIINENR----DIH----YPVVEMASRSKLSSICWNSYIKSQIAS  635 (886)
Q Consensus       565 ~~h~~~V~sl~f~~-d~~~lat~~~d~~Ikiwd~~~~~~~~~----~~~----~~~~~~~~~~~I~~l~~~~~~~~~las  635 (886)
                      ..|.+.|.++...+ .|+++++||.||.|.|||++.......    ..+    ....+..|+-.|+.+-|-|.+..++.|
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999998 789999999999999999976321110    000    111234688899999999999999999


Q ss_pred             ecCCCcEEEEECCCceEEEEecccCCcEEEEEEccCC--CCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCe
Q 002736          636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSAD--PTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANV  712 (886)
Q Consensus       636 ~s~Dg~V~iWd~~t~~~~~~~~~h~~~v~~v~~~p~~--~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v  712 (886)
                      +++|.+++|||..|.+....|+ .++.|.+-+++|..  ..++|+|.+|-.|+|.|+.+       +...+++. |...|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-------Gs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-------GSFSHTLSGHRDGV  191 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-------CcceeeeccccCce
Confidence            9999999999999999887775 46778888888743  35788999999999999999       66666666 46789


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEE--------------EecCCCCeEEEEec-CCCEEEEEECCCcEE
Q 002736          713 CCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT--------------LIGHNKTVSYVKFV-DATTLVSASTDNTLK  777 (886)
Q Consensus       713 ~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~--------------~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~  777 (886)
                      .+|.|+|.+...|++|+.||.|++||+|....+...              -..|.+.|.+++|. ++.++++++.|..++
T Consensus       192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r  271 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR  271 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence            999999997788999999999999999976322332              34677789999996 999999999999999


Q ss_pred             EEeCCCCCccccCCCceEee--cCCCceeEEEE---ecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccc
Q 002736          778 LWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGL---SVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETD  852 (886)
Q Consensus       778 lwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~~---sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  852 (886)
                      +|+..++...     +..+.  .|. .....++   +.+...++---.|+.+.++.+-.+..+..+.             
T Consensus       272 ~wn~~~G~nt-----l~~~g~~~~n-~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------------  332 (397)
T KOG4283|consen  272 VWNMESGRNT-----LREFGPIIHN-QTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------------  332 (397)
T ss_pred             EeecccCccc-----cccccccccc-ccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeee-------------
Confidence            9999887532     11111  011 1111111   2222333333345677777777766665443             


Q ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCCEEEEE
Q 002736          853 DAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       853 ~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~  884 (886)
                      .|...|.+.++.|+-. .+.++.-|++|.-|-
T Consensus       333 ~h~k~i~c~~~~~~fq-~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  333 THLKRINCAAYRPDFE-QCFTGDMNGNIYMWS  363 (397)
T ss_pred             cccceeeEEeecCchh-hhhccccCCcccccc
Confidence            2344599999999988 899999999999885

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.6e-23  Score=215.11  Aligned_cols=292  Identities=16%  Similarity=0.255  Sum_probs=236.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEE
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       567 h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd  646 (886)
                      ..+.|+|+.|+|.-.++++||.|+.++||.++...+...   +  ...-...+|.+.+|.|...+.+++++.-.....||
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l---q--S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL---Q--SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhh---e--eeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            456899999999999999999999999999986433211   1  11225678999999995444999999999999999


Q ss_pred             CCCceEE--EEecccC-CcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCc
Q 002736          647 VSRSQVL--TEMREHE-RRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGR  723 (886)
Q Consensus       647 ~~t~~~~--~~~~~h~-~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  723 (886)
                      +.+.+..  ....++. ..+.....+| ++++++..+..|.|.|....+       +..+.+++..+.|..++|+.+ ++
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT-------~eli~s~KieG~v~~~~fsSd-sk  357 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT-------KELITSFKIEGVVSDFTFSSD-SK  357 (514)
T ss_pred             ccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh-------hhhhheeeeccEEeeEEEecC-Cc
Confidence            9988753  3333443 4566777887 889999999999999999998       788888899999999999988 78


Q ss_pred             EEEEEeCCCeEEEEecCCCCcceEEEecCCCCeE--EEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCC
Q 002736          724 SLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS--YVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT  800 (886)
Q Consensus       724 ~l~~gs~Dg~I~vwDlr~~~~~~~~~~~h~~~V~--~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~  800 (886)
                      .|++.+.+|.|++||++... +++.+.. .+.|.  +++.+ ++.+||+||..|.|.|||..+.......+|+.++..-+
T Consensus       358 ~l~~~~~~GeV~v~nl~~~~-~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt  435 (514)
T KOG2055|consen  358 ELLASGGTGEVYVWNLRQNS-CLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT  435 (514)
T ss_pred             EEEEEcCCceEEEEecCCcc-eEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence            88888889999999999986 4777763 34444  44545 99999999999999999988766555668899998888


Q ss_pred             CceeEEEEecCCCEEEEEcC--CCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCC
Q 002736          801 NVKNFVGLSVWDGYVATGSE--TNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSG  878 (886)
Q Consensus       801 ~~v~~v~~sp~g~~lasgs~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg  878 (886)
                      ..|+++.|+++++.||-+|.  ++.+++-++.+......  |...        ...-+.|.|++|+|.|. +||.|+.+|
T Consensus       436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN--fP~~--------n~~vg~vtc~aFSP~sG-~lAvGNe~g  504 (514)
T KOG2055|consen  436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN--FPTS--------NTKVGHVTCMAFSPNSG-YLAVGNEAG  504 (514)
T ss_pred             eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc--CCCC--------CCcccceEEEEecCCCc-eEEeecCCC
Confidence            99999999999998887775  78999999887543322  2111        23346799999999999 999999999


Q ss_pred             CEEEEEe
Q 002736          879 NIKILEM  885 (886)
Q Consensus       879 ~I~iw~l  885 (886)
                      .+.+|.|
T Consensus       505 rv~l~kL  511 (514)
T KOG2055|consen  505 RVHLFKL  511 (514)
T ss_pred             ceeeEee
Confidence            9999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=226.17  Aligned_cols=295  Identities=20%  Similarity=0.334  Sum_probs=214.4

Q ss_pred             EEEEEcC---CCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECC
Q 002736          572 CSLSFDR---DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS  648 (886)
Q Consensus       572 ~sl~f~~---d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~  648 (886)
                      .++.|++   ....||.+..+|.|.+||........ ........+.|...|..+.|.| ....|++.+.|.++++||+.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk  130 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVK  130 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeec
Confidence            4466665   34688899999999999987643321 1122344568999999999999 78899999999999999999


Q ss_pred             CceEEEE--ecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhh--hhcc---------C--ceeee----ee--
Q 002736          649 RSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL--LLHL---------G--VSIGT----IK--  707 (886)
Q Consensus       649 t~~~~~~--~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~--~~~~---------~--~~~~~----~~--  707 (886)
                      ++..+..  +.+|.+.|.+++|.|.++..|++|+.||.|.|||++....  ...+         +  .+...    +.  
T Consensus       131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            9988766  8899999999999999999999999999999999976431  0000         0  00000    00  


Q ss_pred             --cCCCeEE---EEEeCCCCcEEEEEeC-CCeEEEEecCCCCc-----ceEE--EecCCC-C--eEEEEe-cCCCEEEEE
Q 002736          708 --TKANVCC---VQFPLDSGRSLAFGSA-DHRIYYYDLRNSKI-----PLCT--LIGHNK-T--VSYVKF-VDATTLVSA  770 (886)
Q Consensus       708 --~~~~v~~---v~~sp~~~~~l~~gs~-Dg~I~vwDlr~~~~-----~~~~--~~~h~~-~--V~~v~f-~~~~~l~sg  770 (886)
                        ....|.+   +-+..| ...||++++ |+.|+|||+|+...     |...  +..|.. .  +.++.. +.|.+|+..
T Consensus       211 kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As  289 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS  289 (720)
T ss_pred             ccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence              1122333   444556 678888777 99999999997643     2222  222311 2  233333 267888888


Q ss_pred             ECCCcEEEEeCCCCCccccCCCceEeecCCCceeEE--EEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCC
Q 002736          771 STDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFV--GLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSG  848 (886)
Q Consensus       771 s~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v--~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~  848 (886)
                      +.|++|.+|++.....    .|+..+.+|.+.-..+  ..+|++.+|++|+.|..+++|.+...+.-...          
T Consensus       290 CtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~----------  355 (720)
T KOG0321|consen  290 CTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL----------  355 (720)
T ss_pred             ecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh----------
Confidence            8899999999998764    6788888776543332  58999999999999999999999876543222          


Q ss_pred             CccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          849 PETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       849 ~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                        .-+|...|.+|+|.|.-..-++|++.|-.++||++
T Consensus       356 --l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  356 --LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             --hhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence              24556679999998754334888899999999987

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.92  E-value=8e-25  Score=235.80  Aligned_cols=199  Identities=19%  Similarity=0.175  Sum_probs=150.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCC-------CCcChHHHHHHHHHHHHHHHhhcccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-------RSVDVYECLHIFRQIVEIVYAAHSQG  102 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~-------~~l~~~~~~~i~~qi~~~l~~lHs~g  102 (886)
                      .+...+|++++..++ +|..+  ...+++++|| .+++|.++|....       ..+++..++.++.||+.||.|||++|
T Consensus        61 ~l~~l~h~ni~~~~~-~~~~~--~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~  137 (280)
T cd05043          61 LLYGLSHQNILPILH-VCIED--GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRG  137 (280)
T ss_pred             HHHhCCCCCCCeEEE-EEecC--CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence            344558899888776 55432  4567888888 7789999985431       45899999999999999999999999


Q ss_pred             eeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccc
Q 002736          103 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       103 iiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  182 (886)
                      |+||||||+||+++.++.+|++|||+++.........                                           
T Consensus       138 i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~-------------------------------------------  174 (280)
T cd05043         138 VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHC-------------------------------------------  174 (280)
T ss_pred             EeecccCHhhEEEcCCCcEEECCCCCcccccCCceEE-------------------------------------------
Confidence            9999999999999999999999999986442111000                                           


Q ss_pred             cccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHH
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLL  262 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil  262 (886)
                                                                   ......++..|+|||.+.+..++.++|||||||++
T Consensus       175 ---------------------------------------------~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l  209 (280)
T cd05043         175 ---------------------------------------------LGDNENRPVKWMALESLVNKEYSSASDVWSFGVLL  209 (280)
T ss_pred             ---------------------------------------------eCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHH
Confidence                                                         00001345679999999888899999999999999


Q ss_pred             HHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          263 FELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       263 ~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ||+++    ||..... ......+.....++.....++.+.+++.+||..+|++|||+.++++
T Consensus       210 ~el~~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         210 WELMTLGQTPYVEIDP-FEMAAYLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             HHHhcCCCCCcCcCCH-HHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            99996    6654433 3333333333333333445677889999999999999999999985

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.92  E-value=6.6e-25  Score=246.94  Aligned_cols=156  Identities=13%  Similarity=0.143  Sum_probs=120.3

Q ss_pred             CcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCc
Q 002736           78 SVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPL  157 (886)
Q Consensus        78 ~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (886)
                      .+++..+..|+.||+.||.|||++||+||||||+|||++..+.+|++|||+++........                   
T Consensus       235 ~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~-------------------  295 (401)
T cd05107         235 ALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNY-------------------  295 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceeccccccc-------------------
Confidence            3567788999999999999999999999999999999999999999999998543211000                   


Q ss_pred             hhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccc
Q 002736          158 DMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNW  237 (886)
Q Consensus       158 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~  237 (886)
                                                                                           .......++..
T Consensus       296 ---------------------------------------------------------------------~~~~~~~~~~~  306 (401)
T cd05107         296 ---------------------------------------------------------------------ISKGSTFLPLK  306 (401)
T ss_pred             ---------------------------------------------------------------------ccCCCcCCCCc
Confidence                                                                                 00001156778


Q ss_pred             eecccccCCCCCCcccccchHHHHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCC
Q 002736          238 YASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       238 Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      |+|||.+.+..++.++|||||||++|||++    ||............+.....++.+...+..+.+|+.+||+.+|.+|
T Consensus       307 y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~R  386 (401)
T cd05107         307 WMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIR  386 (401)
T ss_pred             eeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHC
Confidence            999999988889999999999999999996    6644433333333333333333344556788999999999999999


Q ss_pred             CCHHHHhc
Q 002736          314 PKMGELLQ  321 (886)
Q Consensus       314 ps~~eil~  321 (886)
                      |++.++++
T Consensus       387 Ps~~ell~  394 (401)
T cd05107         387 PDFSQLVH  394 (401)
T ss_pred             cCHHHHHH
Confidence            99999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.92  E-value=7.3e-25  Score=233.37  Aligned_cols=203  Identities=13%  Similarity=0.141  Sum_probs=152.3

Q ss_pred             ccccccCceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC-CCCcChHHHHHHHHHHHHHHHhhc
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~-~~~l~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|+.|..  .+...+|++++..++ .+.+    ..++++||| .+++|.+++.+. ...++...++.++.||+.||.|||
T Consensus        47 ~~~~e~~--~l~~l~~~~i~~~~~-~~~~----~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH  119 (260)
T cd05073          47 AFLAEAN--VMKTLQHDKLVKLHA-VVTK----EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE  119 (260)
T ss_pred             HHHHHHH--HHHhcCCCCcceEEE-EEcC----CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHH
Confidence            3444433  445567888888766 3322    567889999 678999999653 456788999999999999999999


Q ss_pred             ccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCC
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  179 (886)
                      +.|++|+||||+||+++..+.+|++|||.+.........                                         
T Consensus       120 ~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~-----------------------------------------  158 (260)
T cd05073         120 QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYT-----------------------------------------  158 (260)
T ss_pred             hCCccccccCcceEEEcCCCcEEECCCcceeeccCCCcc-----------------------------------------
Confidence            999999999999999999999999999988533211000                                         


Q ss_pred             ccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHH
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlG  259 (886)
                                                                      ......++..|+|||.+.+..++.++||||||
T Consensus       159 ------------------------------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG  190 (260)
T cd05073         159 ------------------------------------------------AREGAKFPIKWTAPEAINFGSFTIKSDVWSFG  190 (260)
T ss_pred             ------------------------------------------------cccCCcccccccCHhHhccCCcCccccchHHH
Confidence                                                            00001345669999999888899999999999


Q ss_pred             HHHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       260 vil~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |++|+|++    ||... ........+......+.....+..+.+++.+||+.+|.+||++.+++.
T Consensus       191 ~~l~~l~t~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         191 ILLMEIVTYGRIPYPGM-SNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             HHHHHHHhcCCCCCCCC-CHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence            99999997    66443 333333444444333444455677889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.92  E-value=3.8e-25  Score=262.28  Aligned_cols=217  Identities=18%  Similarity=0.257  Sum_probs=149.7

Q ss_pred             ceeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC----------CCCcChHHHHHHHHHHHHHHHh
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP----------KRSVDVYECLHIFRQIVEIVYA   97 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~----------~~~l~~~~~~~i~~qi~~~l~~   97 (886)
                      ...+...+|++++..++ ++.   ..+..+++||| .|++|.++|...          ...++...++.++.||+.||+|
T Consensus        53 i~ILs~L~HPNIVkl~~-v~~---d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~y  128 (932)
T PRK13184         53 AKIAADLIHPGIVPVYS-ICS---DGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEY  128 (932)
T ss_pred             HHHHHhCCCcCcCeEEE-EEe---eCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHH
Confidence            44556678999988776 554   34678899999 889999988531          1234567889999999999999


Q ss_pred             hcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCC
Q 002736           98 AHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus        98 lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  177 (886)
                      ||++||+||||||+|||++.++.+|++|||++............                                ....
T Consensus       129 LHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~--------------------------------l~~~  176 (932)
T PRK13184        129 VHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLD--------------------------------IDVD  176 (932)
T ss_pred             HHHCCccccCCchheEEEcCCCCEEEEecCcceecccccccccc--------------------------------cccc
Confidence            99999999999999999999999999999999654221100000                                0000


Q ss_pred             CCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccch
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwS  257 (886)
                      ..    ..+                            .        .........+||+.|+|||.+.+..++.++||||
T Consensus       177 ~~----~s~----------------------------~--------s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWS  216 (932)
T PRK13184        177 ER----NIC----------------------------Y--------SSMTIPGKIVGTPDYMAPERLLGVPASESTDIYA  216 (932)
T ss_pred             cc----ccc----------------------------c--------cccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHH
Confidence            00    000                            0        0000011237999999999999999999999999


Q ss_pred             HHHHHHHHhc---CCCCCchhhHHhHhhccCC-CChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRV-LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       258 lGvil~eLl~---pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |||++|||++   ||................. ........++.+.+++.+||..||.+||+..+.+.
T Consensus       217 LGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl  284 (932)
T PRK13184        217 LGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELK  284 (932)
T ss_pred             HHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            9999999999   7755333222221111111 01112345677889999999999999987665543

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.92  E-value=7.2e-25  Score=235.87  Aligned_cols=213  Identities=18%  Similarity=0.210  Sum_probs=153.7

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++..++ ++.   ..+.++++||+ .+++|.+++.+. +.+++..++.++.||+.||.|||+.|++|+||||+||+
T Consensus        60 ~~~~i~~~~~-~~~---~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~  134 (280)
T cd05581          60 GHPGIIKLYY-TFQ---DEENLYFVLEYAPNGELLQYIRKY-GSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENIL  134 (280)
T ss_pred             cCCCchhHHH-Hhc---CCceEEEEEcCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeE
Confidence            3888887766 333   34678899999 599999999664 47899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.++++|||++..............                          +.              +.       
T Consensus       135 i~~~~~~~l~df~~~~~~~~~~~~~~~~~--------------------------~~--------------~~-------  167 (280)
T cd05581         135 LDKDMHIKITDFGTAKVLDPNSSPESNKG--------------------------DA--------------TN-------  167 (280)
T ss_pred             ECCCCCEEecCCccccccCCccccccCCC--------------------------CC--------------cc-------
Confidence            99999999999999865533221100000                          00              00       


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFST  271 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~  271 (886)
                                     +..        .............++..|+|||.+.+..++.++|||||||++|+|++   ||..
T Consensus       168 ---------------~~~--------~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  224 (280)
T cd05581         168 ---------------IDS--------QIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRG  224 (280)
T ss_pred             ---------------ccc--------cccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCC
Confidence                           000        00000001122367889999999988889999999999999999999   6654


Q ss_pred             CchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH----HHHhcCCCC
Q 002736          272 GEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM----GELLQSEFL  325 (886)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~----~eil~h~~~  325 (886)
                      ....... ...... ........++.+.+|+.+||..+|.+||++    +++++||||
T Consensus       225 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         225 SNEYLTF-QKILKL-EYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             ccHHHHH-HHHHhc-CCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            4432222 222211 111222345778899999999999999999    999999997

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.1e-24  Score=230.44  Aligned_cols=197  Identities=20%  Similarity=0.246  Sum_probs=153.2

Q ss_pred             ecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           32 LTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      +...+|++++..+. .+.   ..+..+++||+ .+++|.+++... ..+++..+..++.||+.||.|||++|++|+||||
T Consensus        47 l~~l~h~~i~~~~~-~~~---~~~~~~~v~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p  121 (250)
T cd05123          47 LSRINHPFIVKLHY-AFQ---TEEKLYLVLEYAPGGELFSHLSKE-GRFSEERARFYAAEIVLALEYLHSLGIIYRDLKP  121 (250)
T ss_pred             HHHcCCCcHHHHHH-Hee---cCCeeEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCc
Confidence            44456888877665 332   35678899999 599999999654 4689999999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++.++.++++|||++........                                                     
T Consensus       122 ~ni~~~~~~~~~l~d~~~~~~~~~~~~-----------------------------------------------------  148 (250)
T cd05123         122 ENILLDADGHIKLTDFGLAKELSSEGS-----------------------------------------------------  148 (250)
T ss_pred             ceEEEcCCCcEEEeecCcceecccCCC-----------------------------------------------------
Confidence            999999999999999998854321100                                                     


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---  267 (886)
                                                           ......++..|+|||.+.+..++.++|+||||+++|||++   
T Consensus       149 -------------------------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~  191 (250)
T cd05123         149 -------------------------------------RTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKP  191 (250)
T ss_pred             -------------------------------------cccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCC
Confidence                                                 0011256778999999988888999999999999999999   


Q ss_pred             CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCH---HHHhcCCCC
Q 002736          268 PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKM---GELLQSEFL  325 (886)
Q Consensus       268 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~---~eil~h~~~  325 (886)
                      ||...... .....+... ..+.....+..+.+++.+||..||..||++   .++++||||
T Consensus       192 p~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         192 PFYAEDRK-EIYEKILKD-PLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             CCCCCCHH-HHHHHHhcC-CCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence            77554432 222222221 222223345778899999999999999999   999999997

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=5.7e-23  Score=212.72  Aligned_cols=270  Identities=19%  Similarity=0.250  Sum_probs=227.4

Q ss_pred             cccccccccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceE
Q 002736          533 RSGWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV  612 (886)
Q Consensus       533 ~~~~~~~~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~  612 (886)
                      .+..++|..|..+.++|..+.+..+.+     .||...|+++.|+|+...+++++.|..|+||.....       ..+..
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~~~-----~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------s~~~~  298 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILATL-----KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------SEPTS  298 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhhhc-----cCcceEEEEEEeccchhheeecCCcceEEeeccccc-------cCccc
Confidence            355678888989999999999888777     689999999999999999999999999999997653       24455


Q ss_pred             EecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecc--cCCcEEEEEEccCCCCEEEEEeCCCcEEEEeC
Q 002736          613 EMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE--HERRVWSIDFSSADPTLLASGSDDGSVKLWSI  690 (886)
Q Consensus       613 ~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~--h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~  690 (886)
                      ...|.++|+.+..+| ++.+|++++.||+....|++++..+.....  ..-.+++..|+| |+.+|.+|..||.|+|||+
T Consensus       299 ~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             cccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEc
Confidence            567999999999999 799999999999999999999987765532  335689999999 9999999999999999999


Q ss_pred             chhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCCcceEEEec-CCCCeEEEEec-CCCEE
Q 002736          691 NQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIG-HNKTVSYVKFV-DATTL  767 (886)
Q Consensus       691 ~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~~~~~~~~~-h~~~V~~v~f~-~~~~l  767 (886)
                      ..       +..+..++ |.++|..|+|+-+ |.+||++..|+.|++||+|..+. ..++.- ....|.++.|. .|.+|
T Consensus       377 ks-------~~~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD~SGt~L  447 (506)
T KOG0289|consen  377 KS-------QTNVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFDQSGTYL  447 (506)
T ss_pred             CC-------ccccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcc-cceeeccccccceeEEEcCCCCeE
Confidence            98       44445554 5678999999988 99999999999999999998874 555543 33479999996 89999


Q ss_pred             EEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEec
Q 002736          768 VSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK  829 (886)
Q Consensus       768 ~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~  829 (886)
                      +.++.|=+|.+++-.+..-    ..+..+..|.+..++|.|....+++++||.|..++++-+
T Consensus       448 ~~~g~~l~Vy~~~k~~k~W----~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  448 GIAGSDLQVYICKKKTKSW----TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EeecceeEEEEEecccccc----eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            9998877777776444322    457778889999999999999999999999999988854

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.91  E-value=1.3e-24  Score=232.67  Aligned_cols=199  Identities=15%  Similarity=0.175  Sum_probs=142.8

Q ss_pred             eeecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCC----CCCcChHHHHHHHHHHHHHHHhhcccCee
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP----KRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~----~~~l~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      ..+.+.+|++++..++ .+.   ....++++||| .+++|.++|...    ...+++..++.++.||+.||.|||++||+
T Consensus        47 ~~l~~l~h~~iv~~~~-~~~---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~  122 (269)
T cd05087          47 QPYRSLQHSNLLQCLG-QCT---EVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFI  122 (269)
T ss_pred             HHHHhCCCCCEeeEEE-EEc---CCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEe
Confidence            4455667888888766 443   34568899999 789999999532    12456778889999999999999999999


Q ss_pred             ecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccc
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  184 (886)
                      ||||||+||+++.++++|++|||++.........                                              
T Consensus       123 H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~----------------------------------------------  156 (269)
T cd05087         123 HSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYY----------------------------------------------  156 (269)
T ss_pred             ccccCcceEEEcCCCcEEECCccccccccCccee----------------------------------------------
Confidence            9999999999999999999999998532111000                                              


Q ss_pred             cccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCC-------CCCcccccch
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-------PVSCASDIYR  257 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-------~~s~~sDIwS  257 (886)
                                                                .......++..|+|||++.+.       .++.++||||
T Consensus       157 ------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diws  194 (269)
T cd05087         157 ------------------------------------------VTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWS  194 (269)
T ss_pred             ------------------------------------------ecCCCcCCcccccCHhHhccccccccccCCCccchhHH
Confidence                                                      000112567789999998642       3588999999


Q ss_pred             HHHHHHHHhc----CCCCCchhhHHhHhhccC---CCChh-hhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          258 LGVLLFELFC----PFSTGEEKTRTMSSLRHR---VLPPQ-LLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       258 lGvil~eLl~----pf~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      |||++|||++    ||................   ...+. .....+.+.+++..|+ .+|.+|||++|+++
T Consensus       195 lG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         195 LGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             HHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHH
Confidence            9999999985    775444333222222211   11111 1234456778999998 68999999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.91  E-value=1e-24  Score=240.37  Aligned_cols=206  Identities=18%  Similarity=0.221  Sum_probs=152.6

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRP  110 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP  110 (886)
                      .+....|++++..++ ++..  ....++++|||.+++|.++++.  ..+++..+..++.||+.||.|||++||+||||||
T Consensus        62 ~l~~l~hpniv~~~~-~~~~--~~~~~~lv~e~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p  136 (328)
T cd07856          62 LLKHLRHENIISLSD-IFIS--PLEDIYFVTELLGTDLHRLLTS--RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKP  136 (328)
T ss_pred             HHHhcCCCCeeeEee-eEec--CCCcEEEEeehhccCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCH
Confidence            344567888888665 3322  2346789999988999998854  3578899999999999999999999999999999


Q ss_pred             cceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccC
Q 002736          111 SCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSS  190 (886)
Q Consensus       111 ~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  190 (886)
                      +||+++..+.++++|||.+......                                                       
T Consensus       137 ~Nili~~~~~~~l~dfg~~~~~~~~-------------------------------------------------------  161 (328)
T cd07856         137 SNILINENCDLKICDFGLARIQDPQ-------------------------------------------------------  161 (328)
T ss_pred             HHEeECCCCCEEeCccccccccCCC-------------------------------------------------------
Confidence            9999999999999999988422100                                                       


Q ss_pred             CccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCC-CCCCcccccchHHHHHHHHhc--
Q 002736          191 SAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            .....+++.|+|||.+.+ ..++.++|||||||++|||++  
T Consensus       162 --------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~  203 (328)
T cd07856         162 --------------------------------------MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGK  203 (328)
T ss_pred             --------------------------------------cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCC
Confidence                                                  001256788999999876 458999999999999999999  


Q ss_pred             -CCCCCchhhHHh--------------H------------hhccC-CCCh--hhhccChhhHHHHHHccCCCCCCCCCHH
Q 002736          268 -PFSTGEEKTRTM--------------S------------SLRHR-VLPP--QLLLKFPKEASFCLWLLHPEPSGRPKMG  317 (886)
Q Consensus       268 -pf~~~~~~~~~~--------------~------------~~~~~-~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~  317 (886)
                       ||..........              .            .+... ..+.  ......+.+.++|.+||..+|.+||++.
T Consensus       204 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~  283 (328)
T cd07856         204 PLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAA  283 (328)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence             564332211100              0            00000 0010  1123446788999999999999999999


Q ss_pred             HHhcCCCCCCCcCchHH
Q 002736          318 ELLQSEFLNEPRDSMEE  334 (886)
Q Consensus       318 eil~h~~~~~~~~~~~e  334 (886)
                      +++.||||.....+..+
T Consensus       284 ell~~~~~~~~~~~~~~  300 (328)
T cd07856         284 EALAHPYLAPYHDPTDE  300 (328)
T ss_pred             HHhcCCccccccCCccc
Confidence            99999999876655444

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=6.7e-24  Score=233.70  Aligned_cols=246  Identities=19%  Similarity=0.277  Sum_probs=202.3

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECC
Q 002736          570 LVCSLSFDR-DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS  648 (886)
Q Consensus       570 ~V~sl~f~~-d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~  648 (886)
                      .+..++|+. +.++|||++..|.|.+||+.......    .....-.|...+.++.|++..+++|+||+.||+|++||++
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk----~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR  164 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK----LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR  164 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccch----hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence            455677876 67899999999999999998632211    1113345888999999999999999999999999999999


Q ss_pred             CceEEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeeecCCCeEEEEEeCCCCcEEEEE
Q 002736          649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFG  728 (886)
Q Consensus       649 t~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l~~g  728 (886)
                      ..+....+.+....|.+|.|+|..+..|+++.+.|.+.+||+|.+..     ...+...|.+.|.|+.|+|+ +.+||+|
T Consensus       165 ~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhPn-r~~lATG  238 (839)
T KOG0269|consen  165 SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHPN-REWLATG  238 (839)
T ss_pred             cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecCC-Cceeeec
Confidence            99998899888899999999999999999999999999999998642     22233357889999999997 8999999


Q ss_pred             eCCCeEEEEecCCCC-cceEEEecCCCCeEEEEec--CCCEEEEEEC--CCcEEEEeCCCCCccccCCCceEeecCCCce
Q 002736          729 SADHRIYYYDLRNSK-IPLCTLIGHNKTVSYVKFV--DATTLVSAST--DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK  803 (886)
Q Consensus       729 s~Dg~I~vwDlr~~~-~~~~~~~~h~~~V~~v~f~--~~~~l~sgs~--Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v  803 (886)
                      +.|+.|+|||+...+ .++.++. -..+|.+|+|-  ....|+|++.  |-.|+|||++.+     .-|..++..|++.+
T Consensus       239 GRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-----YIP~~t~~eH~~~v  312 (839)
T KOG0269|consen  239 GRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-----YIPYATFLEHTDSV  312 (839)
T ss_pred             CCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc-----cccceeeeccCccc
Confidence            999999999998654 2344443 34689999994  5577888775  788999999976     47889999999999


Q ss_pred             eEEEEecC-CCEEEEEcCCCcEEEEecCC
Q 002736          804 NFVGLSVW-DGYVATGSETNEVFVYHKAF  831 (886)
Q Consensus       804 ~~v~~sp~-g~~lasgs~Dg~v~iwd~~~  831 (886)
                      +.++|... -..+.++|.|++|..--+..
T Consensus       313 t~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             cceeccCCCceeeEeecCccHHHHhhhhc
Confidence            99999763 34788999999887665544

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-26  Score=227.03  Aligned_cols=224  Identities=17%  Similarity=0.170  Sum_probs=168.3

Q ss_pred             cccccccCCCCCcccccccCceeecccccccCCCCCCccccccccCCceEEEEeeCCcchhhhhcC----CCCCcChHHH
Q 002736            9 ERFGVRGDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDK----PKRSVDVYEC   84 (886)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~g~sL~~~l~~----~~~~l~~~~~   84 (886)
                      +|+...-+....-+|+.|.+.+..+ .+-++++.+|| ++..   ++..+|.||+...||..+-+.    ....+++...
T Consensus        95 KrIr~~n~~keq~rll~e~d~~mks-~~cp~IVkfyG-a~F~---EGdcWiCMELMd~SlDklYk~vy~vq~~~ipE~Il  169 (361)
T KOG1006|consen   95 KRIRSNNIEKEQKRLLMEHDTVMKS-SNCPNIVKFYG-ALFS---EGDCWICMELMDISLDKLYKRVYSVQKSRIPENIL  169 (361)
T ss_pred             EEeeeccchHHHHHHHHHHHHHHhh-cCCcHHHHHhh-hhhc---CCceeeeHHHHhhhHHHHHHHHHHHHhccCcHhhh
Confidence            4444444433344556665554444 47788888888 6654   466788999999998876532    3457899999


Q ss_pred             HHHHHHHHHHHHhhcc-cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhh
Q 002736           85 LHIFRQIVEIVYAAHS-QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRR  163 (886)
Q Consensus        85 ~~i~~qi~~~l~~lHs-~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (886)
                      -+|..-.++||+||-. ..|||||+||+||||+..|.||+||||+|-.+...                            
T Consensus       170 g~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~S----------------------------  221 (361)
T KOG1006|consen  170 GHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDS----------------------------  221 (361)
T ss_pred             hheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHHH----------------------------
Confidence            9999999999999976 58999999999999999999999999999443111                            


Q ss_pred             hcccccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccc
Q 002736          164 TRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEE  243 (886)
Q Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~  243 (886)
                                                                                     ...+.-.|-..|||||-
T Consensus       222 ---------------------------------------------------------------iAkT~daGCrpYmAPER  238 (361)
T KOG1006|consen  222 ---------------------------------------------------------------IAKTVDAGCRPYMAPER  238 (361)
T ss_pred             ---------------------------------------------------------------HHhhhccCCccccChhc
Confidence                                                                           01122267888999999


Q ss_pred             cCC--CCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCChhh-----hccChhhHHHHHHccCCCCCCC
Q 002736          244 LAG--APVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL-----LLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       244 ~~~--~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      +..  ..|+-+||+||||++|||+.|   |+..+.........+..+..|...     ...+..+..||.-||.+|-+.|
T Consensus       239 i~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~R  318 (361)
T KOG1006|consen  239 IDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDR  318 (361)
T ss_pred             cCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccC
Confidence            964  349999999999999999999   777666655555555444443222     2245678899999999999999


Q ss_pred             CCHHHHhcCCCCCCC
Q 002736          314 PKMGELLQSEFLNEP  328 (886)
Q Consensus       314 ps~~eil~h~~~~~~  328 (886)
                      |+..+++.+||+...
T Consensus       319 pky~~Lk~~~fyr~y  333 (361)
T KOG1006|consen  319 PKYDDLKKFPFYRMY  333 (361)
T ss_pred             cchhhhhcCchhhhh
Confidence            999999999998753

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=5.7e-25  Score=211.07  Aligned_cols=196  Identities=15%  Similarity=0.238  Sum_probs=149.6

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      .++|++.++. +-.|..... .-+++|| ...+.+.+-    ..++..+++.++.||+.||+|+||+||+|||+||.|+|
T Consensus        91 gg~NIi~L~D-iV~Dp~Skt-paLiFE~v~n~Dfk~ly----~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvm  164 (338)
T KOG0668|consen   91 GGPNIIKLLD-IVKDPESKT-PSLIFEYVNNTDFKQLY----PTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVM  164 (338)
T ss_pred             CCCCeeehhh-hhcCccccC-chhHhhhhccccHHHHh----hhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceee
Confidence            5899999998 555544333 3455666 888887765    45788999999999999999999999999999999999


Q ss_pred             eccC-CceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCcc
Q 002736          115 MSSF-NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAY  193 (886)
Q Consensus       115 l~~~-~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (886)
                      |+.. ..+++||+|+|.......                                                         
T Consensus       165 Idh~~rkLrlIDWGLAEFYHp~~---------------------------------------------------------  187 (338)
T KOG0668|consen  165 IDHELRKLRLIDWGLAEFYHPGK---------------------------------------------------------  187 (338)
T ss_pred             echhhceeeeeecchHhhcCCCc---------------------------------------------------------
Confidence            9954 569999999995442110                                                         


Q ss_pred             CcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC-CCcccccchHHHHHHHHhc---CC
Q 002736          194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFELFC---PF  269 (886)
Q Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~s~~sDIwSlGvil~eLl~---pf  269 (886)
                                                        .....+.+.+|--||.+..-+ |+.+-|+|||||+|.+|+.   ||
T Consensus       188 ----------------------------------eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepF  233 (338)
T KOG0668|consen  188 ----------------------------------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF  233 (338)
T ss_pred             ----------------------------------eeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcc
Confidence                                              112236688899999998754 9999999999999999998   99


Q ss_pred             CCCchhhHHhHhhcc---------------CCCChh---------------------hhccChhhHHHHHHccCCCCCCC
Q 002736          270 STGEEKTRTMSSLRH---------------RVLPPQ---------------------LLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       270 ~~~~~~~~~~~~~~~---------------~~~~~~---------------------~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      +.+.......-.+..               -.++|.                     ..-..|++.+|+.++|.+|..+|
T Consensus       234 FhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeR  313 (338)
T KOG0668|consen  234 FHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQER  313 (338)
T ss_pred             cCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccc
Confidence            887665544322110               011111                     11135788899999999999999


Q ss_pred             CCHHHHhcCCCCCCC
Q 002736          314 PKMGELLQSEFLNEP  328 (886)
Q Consensus       314 ps~~eil~h~~~~~~  328 (886)
                      +||.|++.||||...
T Consensus       314 lTakEam~HpyF~~~  328 (338)
T KOG0668|consen  314 LTAKEAMAHPYFAPV  328 (338)
T ss_pred             cchHHHhcCchHHHH
Confidence            999999999999753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.4e-22  Score=201.75  Aligned_cols=262  Identities=15%  Similarity=0.275  Sum_probs=199.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEEe-CCCCCeEEEecCCCcEE
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN-SYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       565 ~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~~-~~~~~~las~s~Dg~V~  643 (886)
                      .+|.+-|.++.|++.|+.+|||+.|.+++|||+...   ..........-.|.+.|..|.|. |.-|+.+|++++|++|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCC---CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            468999999999999999999999999999998542   23334445566799999999995 44588999999999999


Q ss_pred             EEECCC---------ceEEEEecccCCcEEEEEEccC-CCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee------
Q 002736          644 VWDVSR---------SQVLTEMREHERRVWSIDFSSA-DPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK------  707 (886)
Q Consensus       644 iWd~~t---------~~~~~~~~~h~~~v~~v~~~p~-~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~------  707 (886)
                      ||.-..         -.....+......|++|+|.|. -|-.||+++.||.++||+.-....... -.....+.      
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-WTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-chhhhhhhhccCCc
Confidence            997521         1234556677889999999984 356899999999999998755321111 11111111      


Q ss_pred             --cCCCeEEEEEeCCC--CcEEEEEeCC-----CeEEEEecCCCC---cceEEEecCCCCeEEEEec-----CCCEEEEE
Q 002736          708 --TKANVCCVQFPLDS--GRSLAFGSAD-----HRIYYYDLRNSK---IPLCTLIGHNKTVSYVKFV-----DATTLVSA  770 (886)
Q Consensus       708 --~~~~v~~v~~sp~~--~~~l~~gs~D-----g~I~vwDlr~~~---~~~~~~~~h~~~V~~v~f~-----~~~~l~sg  770 (886)
                        .+....||.|+|..  ..+||.|+.+     +.++||......   ..+..+.+|..+|+.|+|.     .-..||+|
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence              34567899999752  4578888866     478888765433   1355678999999999995     44689999


Q ss_pred             ECCCcEEEEeCCCCCcc--------------ccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCC
Q 002736          771 STDNTLKLWDLSMCTSR--------------VIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAF  831 (886)
Q Consensus       771 s~Dg~i~lwd~~~~~~~--------------~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~  831 (886)
                      +.|| |+||.+......              ..-+.+..+.+|.++|+.|.|+-.|..|++.|.||.|++|....
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            9999 999999842210              01123556889999999999999999999999999999998654

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.91  E-value=2.8e-24  Score=230.03  Aligned_cols=192  Identities=16%  Similarity=0.240  Sum_probs=147.9

Q ss_pred             ccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhc---CCCCCcChHHHHHHHHHHHHHHHhhcc-cCeeeccc
Q 002736           34 HGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLD---KPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHNV  108 (886)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~---~~~~~l~~~~~~~i~~qi~~~l~~lHs-~giiHrDl  108 (886)
                      ..+|++++..++ .+.   ..+.++++||| .|++|.+++.   .....+++..++.++.||+.||.|||+ .||+|+||
T Consensus        65 ~~~h~~i~~~~~-~~~---~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl  140 (269)
T cd08528          65 QLRHPNIVRYYK-TFL---ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDL  140 (269)
T ss_pred             cCCCCCeeeEEe-eEc---cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCC
Confidence            367888887776 333   34678999999 7889998873   334568999999999999999999996 78999999


Q ss_pred             CCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+||+++.++.++++|||.+.......                                                    
T Consensus       141 ~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------------------------------------------  168 (269)
T cd08528         141 TPNNIMLGEDDKVTITDFGLAKQKQPES----------------------------------------------------  168 (269)
T ss_pred             CHHHEEECCCCcEEEecccceeeccccc----------------------------------------------------
Confidence            9999999999999999999985431110                                                    


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~-  267 (886)
                                                             ......|+..|+|||.+.+..++.++|||||||++|||++ 
T Consensus       169 ---------------------------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g  209 (269)
T cd08528         169 ---------------------------------------KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTL  209 (269)
T ss_pred             ---------------------------------------ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhC
Confidence                                                   0011256888999999998889999999999999999998 


Q ss_pred             --CCCCCchhhHHhHhhccCCCChhh-hccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQL-LLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                        ||........ ...+......+.. ....+.+.+++.+||..||.+||++.|+..
T Consensus       210 ~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~  265 (269)
T cd08528         210 QPPFYSTNMLSL-ATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSA  265 (269)
T ss_pred             CCcccccCHHHH-HHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHH
Confidence              6654433322 2233333332222 245678889999999999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.91  E-value=2.3e-24  Score=233.19  Aligned_cols=200  Identities=19%  Similarity=0.208  Sum_probs=148.7

Q ss_pred             ccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCccee
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIl  114 (886)
                      +|++++...+.+    .....++++||| .|++|.+++.+. ..+++.+++.++.||+.+|.|||+.|++||||||+||+
T Consensus        63 ~~~~i~~~~~~~----~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil  137 (288)
T cd05583          63 RCPFLVTLHYAF----QTDTKLHLILDYVNGGELFTHLYQR-EHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENIL  137 (288)
T ss_pred             CCcchhhhheee----ecCCEEEEEEecCCCCcHHHHHhhc-CCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeE
Confidence            577777766522    234568899999 788999999654 56899999999999999999999999999999999999


Q ss_pred             eccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccC
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.++++|||++.........                                                        
T Consensus       138 ~~~~~~~~l~dfg~~~~~~~~~~~--------------------------------------------------------  161 (288)
T cd05583         138 LDSEGHVVLTDFGLSKEFLAEEEE--------------------------------------------------------  161 (288)
T ss_pred             ECCCCCEEEEECcccccccccccc--------------------------------------------------------
Confidence            999999999999988543211000                                                        


Q ss_pred             cccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCC--CCcccccchHHHHHHHHhc---CC
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP--VSCASDIYRLGVLLFELFC---PF  269 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~--~s~~sDIwSlGvil~eLl~---pf  269 (886)
                                                       ......|+..|+|||.+.+..  .+.++||||||+++|||++   ||
T Consensus       162 ---------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~  208 (288)
T cd05583         162 ---------------------------------RAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPF  208 (288)
T ss_pred             ---------------------------------ccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCc
Confidence                                             000125788899999987755  7889999999999999999   66


Q ss_pred             CCCchh---hHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCC---HHHHhcCCCCCCCcC
Q 002736          270 STGEEK---TRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK---MGELLQSEFLNEPRD  330 (886)
Q Consensus       270 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps---~~eil~h~~~~~~~~  330 (886)
                      ......   ......+.. ..++......+.+.+++.+||..+|++|||   +.++|+||||+....
T Consensus       209 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~~~  274 (288)
T cd05583         209 TVDGEQNSQSEISRRILK-SKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGIDW  274 (288)
T ss_pred             ccCcccchHHHHHHHHHc-cCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccCCH
Confidence            432211   111111111 122333345577889999999999999998   467799999987643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.91  E-value=7.1e-25  Score=218.77  Aligned_cols=158  Identities=18%  Similarity=0.213  Sum_probs=123.2

Q ss_pred             cchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccCCceeeeeCCccCCCCCCcccccccccc
Q 002736           66 VSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQN  145 (886)
Q Consensus        66 ~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~  145 (886)
                      |+|.++|.+.+..+++.+++.|++||+.||.|||++|      ||+|||++.++.+|+  ||++......          
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~----------   62 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTPE----------   62 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeeccc----------
Confidence            6899999766677999999999999999999999999      999999999999998  9987432110          


Q ss_pred             ccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCcccccccccccccccccccCCCC
Q 002736          146 METKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPF  225 (886)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  225 (886)
                                                                                                      
T Consensus        63 --------------------------------------------------------------------------------   62 (176)
T smart00750       63 --------------------------------------------------------------------------------   62 (176)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCchhhHHhHhhccCCCCh------hhhccCh
Q 002736          226 PMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPP------QLLLKFP  296 (886)
Q Consensus       226 ~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~~~~~~~~~~~~~~~~~------~~~~~~~  296 (886)
                           ...||+.|+|||++.+..|+.++|||||||++|||++   ||............+.....+.      .......
T Consensus        63 -----~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (176)
T smart00750       63 -----QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSA  137 (176)
T ss_pred             -----cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHh
Confidence                 0156899999999999999999999999999999998   7754433333222222211111      1111122


Q ss_pred             --hhHHHHHHccCCCCCCCCCHHHHhcCCCCC
Q 002736          297 --KEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       297 --~~~~li~~~L~~dP~~Rps~~eil~h~~~~  326 (886)
                        .+.+++.+||..+|.+||++.|+++|+|+.
T Consensus       138 ~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~  169 (176)
T smart00750      138 ARSFADFMRVCASRLPQRREAANHYLAHCRAL  169 (176)
T ss_pred             hhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence              578999999999999999999999998764

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.91  E-value=4.1e-24  Score=229.25  Aligned_cols=202  Identities=14%  Similarity=0.095  Sum_probs=146.7

Q ss_pred             eeecccccccCCCCCCccccccccC---CceEEEEee-CCcchhhhhcC-----CCCCcChHHHHHHHHHHHHHHHhhcc
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAI---DPFVHAIEW-GDVSLRQWLDK-----PKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~e~-~g~sL~~~l~~-----~~~~l~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      ..+...+|++++..++ ++......   ...+++++| .+++|.+++..     ....++...++.++.||+.||.|||+
T Consensus        53 ~~l~~l~h~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~  131 (273)
T cd05074          53 ACMKEFDHPNVIKLIG-VSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS  131 (273)
T ss_pred             HHHhcCCCCCcceEEE-EEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3455667888888776 44433222   234677777 78899888632     22357899999999999999999999


Q ss_pred             cCeeecccCCcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCc
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  180 (886)
                      .||+||||||+||+++.++.+|++|||+++.........                                         
T Consensus       132 ~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~-----------------------------------------  170 (273)
T cd05074         132 KNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYR-----------------------------------------  170 (273)
T ss_pred             CCEeecccchhhEEEcCCCCEEECcccccccccCCccee-----------------------------------------
Confidence            999999999999999999999999999986432110000                                         


Q ss_pred             cccccccccCCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHH
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGv  260 (886)
                                                                     ......+++.|++||.+.+..++.++|||||||
T Consensus       171 -----------------------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~  203 (273)
T cd05074         171 -----------------------------------------------QGCASKLPVKWLALESLADNVYTTHSDVWAFGV  203 (273)
T ss_pred             -----------------------------------------------cCCCccCchhhcCHhHHhcCccchhhhhHHHHH
Confidence                                                           000013356699999998888999999999999


Q ss_pred             HHHHHhc----CCCCCchhhHHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       261 il~eLl~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                      ++|||++    ||.. .........+............++.+.+++.+||..+|.+||++.++++
T Consensus       204 il~el~~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~  267 (273)
T cd05074         204 TMWEIMTRGQTPYAG-VENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRD  267 (273)
T ss_pred             HHHHHhhCCCCCCCC-CCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            9999997    4533 3333333333322222222345678889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.91  E-value=5.3e-25  Score=233.61  Aligned_cols=183  Identities=17%  Similarity=0.275  Sum_probs=140.9

Q ss_pred             cCCceEEEEeeCCcchhhhhcCCCC--CcChHHHHHHHHHHHHHHHhhcccCeeecccCCcceeeccC-CceeeeeCCcc
Q 002736           53 AIDPFVHAIEWGDVSLRQWLDKPKR--SVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSF-NHVSFIESASC  129 (886)
Q Consensus        53 ~~~~~~i~~e~~g~sL~~~l~~~~~--~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~NIll~~~-~~vki~dfg~~  129 (886)
                      ..+++|+|+|....+|++.|++-+.  .|....++.|+.|++.||..|-..||+|.||||.|||+++. +.+||||||.|
T Consensus       505 hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA  584 (752)
T KOG0670|consen  505 HKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSA  584 (752)
T ss_pred             hcceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccc
Confidence            5678999999999999999977543  46889999999999999999999999999999999999854 56899999999


Q ss_pred             CCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccccCCccCcccccccCccccccc
Q 002736          130 SDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL  209 (886)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (886)
                      ...+..++                                                                        
T Consensus       585 ~~~~enei------------------------------------------------------------------------  592 (752)
T KOG0670|consen  585 SFASENEI------------------------------------------------------------------------  592 (752)
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            66543322                                                                        


Q ss_pred             ccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc---CCCCCc--hhhHHhHhhcc
Q 002736          210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGE--EKTRTMSSLRH  284 (886)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~---pf~~~~--~~~~~~~~~~~  284 (886)
                                          +.++-+..|+|||++.|.+|++..|+||+||.||||.|   -|.+..  .....+..+..
T Consensus       593 --------------------tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KG  652 (752)
T KOG0670|consen  593 --------------------TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKG  652 (752)
T ss_pred             --------------------cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcC
Confidence                                22455778999999999999999999999999999999   332222  11112222211


Q ss_pred             CC-----------------------------------------CC---------------hhhhccChhhHHHHHHccCC
Q 002736          285 RV-----------------------------------------LP---------------PQLLLKFPKEASFCLWLLHP  308 (886)
Q Consensus       285 ~~-----------------------------------------~~---------------~~~~~~~~~~~~li~~~L~~  308 (886)
                      .+                                         .|               .........+.+|+.+||..
T Consensus       653 k~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~L  732 (752)
T KOG0670|consen  653 KFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLIL  732 (752)
T ss_pred             CCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhcc
Confidence            00                                         00               00011112346999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCC
Q 002736          309 EPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       309 dP~~Rps~~eil~h~~~~~  327 (886)
                      ||++|.|..|+|+||||.+
T Consensus       733 dP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  733 DPEKRITVNQALKHPFITE  751 (752)
T ss_pred             ChhhcCCHHHHhcCCcccC
Confidence            9999999999999999975

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=2.2e-24  Score=224.40  Aligned_cols=205  Identities=18%  Similarity=0.239  Sum_probs=157.7

Q ss_pred             cccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhccc--CeeecccCCc
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ--GIVVHNVRPS  111 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~--giiHrDlkP~  111 (886)
                      .+|+++|.+|.-+.   ...+.||.|.|| .|.+|.-||+.+ +.+++.+++.|+.||+.||.||...  -|||-||||.
T Consensus       524 LDHpRIVKlYDyfs---lDtdsFCTVLEYceGNDLDFYLKQh-klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPg  599 (775)
T KOG1151|consen  524 LDHPRIVKLYDYFS---LDTDSFCTVLEYCEGNDLDFYLKQH-KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPG  599 (775)
T ss_pred             cCcceeeeeeeeee---eccccceeeeeecCCCchhHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCc
Confidence            57888888888333   357889999999 778888888655 7889999999999999999999976  5999999999


Q ss_pred             ceeec---cCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCccccccccc
Q 002736          112 CFVMS---SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       112 NIll~---~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  188 (886)
                      ||||.   ..|.+||+|||+++....++.+...                                               
T Consensus       600 NILLv~GtacGeIKITDFGLSKIMdddSy~~vd-----------------------------------------------  632 (775)
T KOG1151|consen  600 NILLVNGTACGEIKITDFGLSKIMDDDSYNSVD-----------------------------------------------  632 (775)
T ss_pred             cEEEecCcccceeEeeecchhhhccCCccCccc-----------------------------------------------
Confidence            99994   5688999999999876555332100                                               


Q ss_pred             cCCccCcccccccCcccccccccccccccccccCCCCCcee-eeeccccceecccccCCC----CCCcccccchHHHHHH
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQ-ILLMETNWYASPEELAGA----PVSCASDIYRLGVLLF  263 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~gt~~Y~aPE~~~~~----~~s~~sDIwSlGvil~  263 (886)
                                                           .+.. .-..||.||++||++.-.    +.+.++||||+|||+|
T Consensus       633 -------------------------------------GmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFy  675 (775)
T KOG1151|consen  633 -------------------------------------GMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFY  675 (775)
T ss_pred             -------------------------------------ceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhh
Confidence                                                 0011 113799999999998643    2799999999999999


Q ss_pred             HHhc---CCCCCchhhHHhH---hhcc-CCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhcCCCCCC
Q 002736          264 ELFC---PFSTGEEKTRTMS---SLRH-RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       264 eLl~---pf~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~  327 (886)
                      ..+.   ||...........   ++.. .+-.|.-+..++++.+||.+||.+--++|....++..||||..
T Consensus       676 QClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllP  746 (775)
T KOG1151|consen  676 QCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLP  746 (775)
T ss_pred             hhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHccCccccc
Confidence            9988   8865544333221   1111 1112333456788999999999999999999999999999874

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.91  E-value=3.5e-24  Score=231.15  Aligned_cols=202  Identities=20%  Similarity=0.209  Sum_probs=148.9

Q ss_pred             eecccccccCCCCCCccccccccCCceEEEEee-CCcchhhhhcCCCCCcChHHHHHHHHHHHHHHHhhcccCeeecccC
Q 002736           31 ELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVR  109 (886)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~-~g~sL~~~l~~~~~~l~~~~~~~i~~qi~~~l~~lHs~giiHrDlk  109 (886)
                      .+....|++++..++ ++.+. ....++++||| .+++|.+++.+....+++..+..++.||+.||.|||++||+|+|||
T Consensus        59 ~l~~l~~~~i~~~~~-~~~~~-~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~  136 (284)
T cd05038          59 ILRTLDHENIVKYKG-VCEKP-GGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLA  136 (284)
T ss_pred             HHHhCCCCChheEEe-eeecC-CCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            345567888877665 55432 34567889998 6899999997655578999999999999999999999999999999


Q ss_pred             CcceeeccCCceeeeeCCccCCCCCCccccccccccccccCCCCCCCchhhhhhhcccccccccccCCCCcccccccccc
Q 002736          110 PSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQS  189 (886)
Q Consensus       110 P~NIll~~~~~vki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  189 (886)
                      |+||+++.++.++++|||.+...........                                                 
T Consensus       137 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-------------------------------------------------  167 (284)
T cd05038         137 ARNILVESEDLVKISDFGLAKVLPEDKDYYY-------------------------------------------------  167 (284)
T ss_pred             HHhEEEcCCCCEEEcccccccccccCCccee-------------------------------------------------
Confidence            9999999999999999999865431100000                                                 


Q ss_pred             CCccCcccccccCcccccccccccccccccccCCCCCceeeeeccccceecccccCCCCCCcccccchHHHHHHHHhc--
Q 002736          190 SSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--  267 (886)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDIwSlGvil~eLl~--  267 (886)
                                                            ......++..|+|||.+.+..++.++|||||||++|||++  
T Consensus       168 --------------------------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~  209 (284)
T cd05038         168 --------------------------------------VKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYG  209 (284)
T ss_pred             --------------------------------------ccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccC
Confidence                                                  0000133556999999988889999999999999999998  


Q ss_pred             -CCCCCchhh--------------HHhHhhccCCCChhhhccChhhHHHHHHccCCCCCCCCCHHHHhc
Q 002736          268 -PFSTGEEKT--------------RTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       268 -pf~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  321 (886)
                       ||.......              .....+......+........+.+++.+||.++|.+||++.|+++
T Consensus       210 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         210 DPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             CCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence             554322211              111111222222223344567889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.3e-22  Score=197.73  Aligned_cols=266  Identities=15%  Similarity=0.238  Sum_probs=199.9

Q ss_pred             EEEEeCCCcEEEEEcCcccCccccccc----c-eEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEec
Q 002736          583 FAAAGVNKKIKVFECDAIINENRDIHY----P-VVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMR  657 (886)
Q Consensus       583 lat~~~d~~Ikiwd~~~~~~~~~~~~~----~-~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~  657 (886)
                      |++|++...|.=|++.-......+...    | ....+|.+.|++++.+   +.++|||+.|-+|+|||+++......+-
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhccee
Confidence            566777766666666543211111111    1 2234699999999986   6799999999999999999999988888


Q ss_pred             ccCCcEEEEEEccCCC--CEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 002736          658 EHERRVWSIDFSSADP--TLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRI  734 (886)
Q Consensus       658 ~h~~~v~~v~~~p~~~--~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~l~~gs~Dg~I  734 (886)
                      .|.+.|+++.|.+ .-  ++|++|++||.|.+|+...       ...+.+++ |.+.|+.++.+|. +++.++.+.|+.+
T Consensus        81 ~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~-------W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~l  151 (362)
T KOG0294|consen   81 SHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS-------WELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVL  151 (362)
T ss_pred             ccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC-------eEEeeeecccccccceeEecCC-CceEEEEcCCcee
Confidence            9999999999986 43  3999999999999999988       66666666 4567999999999 8999999999999


Q ss_pred             EEEecCCCCcceEEEecCCCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCC
Q 002736          735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG  813 (886)
Q Consensus       735 ~vwDlr~~~~~~~~~~~h~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~  813 (886)
                      +.||+-+++.....--.|.  .+.|.|+ .|.+++.++.+ .|-+|-+.+...      ...+. ....+.++-|- ++.
T Consensus       152 r~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v------~~~i~-~~~r~l~~~~l-~~~  220 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV------FREIE-NPKRILCATFL-DGS  220 (362)
T ss_pred             eeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhH------hhhhh-ccccceeeeec-CCc
Confidence            9999988875222222333  3449997 78888877764 688998876531      11111 11224444442 567


Q ss_pred             EEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEE--ccCCCcEEEEEeCCCCEEEEEe
Q 002736          814 YVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCW--RGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       814 ~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~--s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      ++++|++|+.|.+||.....++..+             .+|...|-++.+  .|++. +|+|+++||.|+||++
T Consensus       221 ~L~vG~d~~~i~~~D~ds~~~~~~~-------------~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  221 ELLVGGDNEWISLKDTDSDTPLTEF-------------LAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDI  280 (362)
T ss_pred             eEEEecCCceEEEeccCCCccceee-------------ecchhheeeeEEEecCCce-EEEEeccCceEEEEEc
Confidence            9999999999999999987666443             456777888884  56677 9999999999999996

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.6e-23  Score=224.93  Aligned_cols=243  Identities=18%  Similarity=0.338  Sum_probs=201.9

Q ss_pred             CCCCee---eEEEeCCCCCeEEEecCCCcEEEEECCCce------EEEEecccCCcEEEEEEccCCCCEEEEEeCCCcEE
Q 002736          616 SRSKLS---SICWNSYIKSQIASSNFEGVVQVWDVSRSQ------VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVK  686 (886)
Q Consensus       616 ~~~~I~---~l~~~~~~~~~las~s~Dg~V~iWd~~t~~------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~  686 (886)
                      +...|.   .+..+...+++|+||+.||.|++|++....      ....++.|.+.|+++...- +++.|++||.|-+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVK   98 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEE
Confidence            444555   444555567899999999999999986432      3667888999999999885 888999999999999


Q ss_pred             EEeCchhhhhhccCceeeeee-cCCCeEEEEE-eCCCCcEEEEEeCCCeEEEEecCCCC---------cceEEEe-cCCC
Q 002736          687 LWSINQAILLLHLGVSIGTIK-TKANVCCVQF-PLDSGRSLAFGSADHRIYYYDLRNSK---------IPLCTLI-GHNK  754 (886)
Q Consensus       687 lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~-sp~~~~~l~~gs~Dg~I~vwDlr~~~---------~~~~~~~-~h~~  754 (886)
                      +|+.....     ..+..++. |...|.|+++ -++ ..++|+|+-|+.|.+||+.++.         .+...+. |+..
T Consensus        99 ~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   99 VWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             EeecccCc-----chhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            99998732     13444444 5677999999 555 7899999999999999998652         2233444 8999


Q ss_pred             CeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCC
Q 002736          755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPM  833 (886)
Q Consensus       755 ~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~  833 (886)
                      .|++++.. .+..|++|+..+.|++||.+++.      .+..++||+..|..+-.++||..++++|.||+|++||+.-..
T Consensus       173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             ceeeeecCCcceEEEecCcccceEEecccccc------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence            99999996 77899999999999999999984      377889999999999999999999999999999999999988


Q ss_pred             cceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          834 PALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       834 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      ++.++..             |...|+++.-+|+-. .+.+|+.||.|..=+|
T Consensus       247 Cl~T~~v-------------H~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  247 CLATYIV-------------HKEGVWALQSSPSFT-HVYSGGRDGNIYRTDL  284 (735)
T ss_pred             eeeeEEe-------------ccCceEEEeeCCCcc-eEEecCCCCcEEeccc
Confidence            8877643             455699999999988 9999999999987554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.3e-22  Score=196.60  Aligned_cols=310  Identities=17%  Similarity=0.224  Sum_probs=220.5

Q ss_pred             EEeeecCceEEEEeccCcccCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCcccCcccccccceEEecCCCCeeeEEE
Q 002736          546 KYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICW  625 (886)
Q Consensus       546 ~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d~~~lat~~~d~~Ikiwd~~~~~~~~~~~~~~~~~~~~~~~I~~l~~  625 (886)
                      .-|+........-|....+.+|...|++++|+.||++|||++.|+.|+||++.+-....   |..+.....-+..+.+.|
T Consensus        64 ~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e---Hr~~R~nve~dhpT~V~F  140 (420)
T KOG2096|consen   64 DQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE---HRCIRQNVEYDHPTRVVF  140 (420)
T ss_pred             hhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh---hhHhhccccCCCceEEEE
Confidence            33444444444444445567899999999999999999999999999999998632211   111111112235678999


Q ss_pred             eCCCCCeEEEecCCCcEEEEECCCce---EE--------EEe-cccCCcEEEEEEccCCCCEEEEEeCCCcEEEEeCchh
Q 002736          626 NSYIKSQIASSNFEGVVQVWDVSRSQ---VL--------TEM-REHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA  693 (886)
Q Consensus       626 ~~~~~~~las~s~Dg~V~iWd~~t~~---~~--------~~~-~~h~~~v~~v~~~p~~~~~l~sgs~Dg~v~lwd~~~~  693 (886)
                      .|+....++++-...++++|.+...+   ..        ..| +.|...+.++-..- ++.++++++.|..|.||+++  
T Consensus       141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk--  217 (420)
T KOG2096|consen  141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK--  217 (420)
T ss_pred             CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC--
Confidence            99888889988888899999874322   11        011 23666677777663 77899999999999999998  


Q ss_pred             hhhhccCceeeeeecC-CCeEEEEEeCCCCcEEEEEeCCCeEEEEecCCCC-------cceEEEecCCCCeEEEEec-CC
Q 002736          694 ILLLHLGVSIGTIKTK-ANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK-------IPLCTLIGHNKTVSYVKFV-DA  764 (886)
Q Consensus       694 ~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~~l~~gs~Dg~I~vwDlr~~~-------~~~~~~~~h~~~V~~v~f~-~~  764 (886)
                            ++.+.++... ......+.+|+ |+++++++.---|++|.+--.+       ..+..+.||..+|...+|+ +.
T Consensus       218 ------Gq~L~~idtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S  290 (420)
T KOG2096|consen  218 ------GQLLQSIDTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS  290 (420)
T ss_pred             ------CceeeeeccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc
Confidence                  4555555543 34677889999 9999999998889999863221       2366789999999999998 88


Q ss_pred             CEEEEEECCCcEEEEeCCCCCccc-cCCCceEe----ecCCCceeEEEEecCCCEEEEEcCCCcEEEEecCCCCcceeec
Q 002736          765 TTLVSASTDNTLKLWDLSMCTSRV-IDTPLHSF----TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFN  839 (886)
Q Consensus       765 ~~l~sgs~Dg~i~lwd~~~~~~~~-~~~~~~~~----~~h~~~v~~v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~  839 (886)
                      ..++|.|.||+++|||+.-.-... ....+++.    ..-.+.-.-++++|.|+.||... ...+.+|....++..-.+.
T Consensus       291 ~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e  369 (420)
T KOG2096|consen  291 TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE  369 (420)
T ss_pred             ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH
Confidence            899999999999999986421100 00112222    11122233789999999888765 3568999888776543222


Q ss_pred             cCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEE
Q 002736          840 FNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKIL  883 (886)
Q Consensus       840 ~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw  883 (886)
                                  +-|..-|++++|+++|. +++|++ |..++++
T Consensus       370 ------------~~h~~~Is~is~~~~g~-~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  370 ------------DIHSTTISSISYSSDGK-YIATCG-DRYVRVI  399 (420)
T ss_pred             ------------HhhcCceeeEEecCCCc-EEeeec-ceeeeee
Confidence                        45677899999999999 777765 5566665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.9e-22  Score=219.04  Aligned_cols=316  Identities=16%  Similarity=0.202  Sum_probs=241.2

Q ss_pred             ccccceEEeeecCceEEEEeccCcccCCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEEEEcCcccCccc---
Q 002736          540 FLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRD-----------GELFAAAGVNKKIKVFECDAIINENR---  605 (886)
Q Consensus       540 ~~d~~~~~w~~~~~~~~~~l~~~~~~~h~~~V~sl~f~~d-----------~~~lat~~~d~~Ikiwd~~~~~~~~~---  605 (886)
                      .-|..+.+||+.....+...  ...+.|+.-|.++.--|.           ...|.|++.|++|++|+++.......   
T Consensus       343 YndhSlYvWDvrD~~kvgk~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR  420 (1080)
T KOG1408|consen  343 YNDHSLYVWDVRDVNKVGKC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR  420 (1080)
T ss_pred             EcCceEEEEeccccccccce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence            34778999998765433322  334668888888877662           23589999999999999876211110   


Q ss_pred             -------------cc--------ccc------eEEecCCCCeeeEEEeCCCCCeEEEecCCCcEEEEECCCceEEEEecc
Q 002736          606 -------------DI--------HYP------VVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE  658 (886)
Q Consensus       606 -------------~~--------~~~------~~~~~~~~~I~~l~~~~~~~~~las~s~Dg~V~iWd~~t~~~~~~~~~  658 (886)
                                   +.        ..+      ......+-.+.+|+.+| ++++||+|+.-|+++|||+.....+..++.
T Consensus       421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA  499 (1080)
T KOG1408|consen  421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEA  499 (1080)
T ss_pred             ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheec
Confidence                         00        000      11223566799999999 799999999999999999999998889999


Q ss_pred             cCCcEEEEEEccC--CCCEEEEEeCCCcEEEEeCchhhhhhccCceeeeee-cCCCeEEEEEeCCCC-cEEEEEeCCCeE
Q 002736          659 HERRVWSIDFSSA--DPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSG-RSLAFGSADHRI  734 (886)
Q Consensus       659 h~~~v~~v~~~p~--~~~~l~sgs~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~~l~~gs~Dg~I  734 (886)
                      |+..|.|+.|+-.  ...+||+++.|.-|+|+|+...      -..++++. |.+.|++|.|--.+. ..++++++|..|
T Consensus       500 HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksi  573 (1080)
T KOG1408|consen  500 HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI  573 (1080)
T ss_pred             ccceeEEEeecCchhhhHhhhhccCCceEEEEecccc------cchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence            9999999999831  2468999999999999999764      23344554 467899999987732 568889999987


Q ss_pred             EEEecCCCCcceEEEecC-----CCCeEEEEec-CCCEEEEEECCCcEEEEeCCCCCccccCCCceEeec---CCCceeE
Q 002736          735 YYYDLRNSKIPLCTLIGH-----NKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTG---HTNVKNF  805 (886)
Q Consensus       735 ~vwDlr~~~~~~~~~~~h-----~~~V~~v~f~-~~~~l~sgs~Dg~i~lwd~~~~~~~~~~~~~~~~~~---h~~~v~~  805 (886)
                      .+--.+... ....+..|     ...++.++.- +..++++++.|..|+|||+.+++      .+++|+|   |.+...-
T Consensus       574 mFr~~qk~~-~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK------q~k~FKgs~~~eG~lIK  646 (1080)
T KOG1408|consen  574 MFRVNQKAS-SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK------QVKSFKGSRDHEGDLIK  646 (1080)
T ss_pred             heehhcccc-CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc------eeeeecccccCCCceEE
Confidence            643333222 12333333     2456777773 78899999999999999999985      3677765   5566777


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEecCCCCcceeeccCCCCCCCCCccccCCCcEEEEEEccCCCcEEEEEeCCCCEEEEEe
Q 002736          806 VGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       806 v~~sp~g~~lasgs~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~s~~~~~~l~s~~~dg~I~iw~l  885 (886)
                      |.+.|.|-||||...|.++.+||..+++++.+.             .+|...|+.+.|.+|-+ .|++++.||.|.||.|
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-------------~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-------------TGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKL  712 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEeccchhhhhh-------------cCcchheeeeeecccch-hheeecCCceEEEEEC
Confidence            899999999999999999999999999988543             46778899999999999 9999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	886
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-14
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-13
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-13
2h9l_A	329	Wdr5delta23 Length = 329		2e-13
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-13
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-13
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-13
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-13
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-13
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-13
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-13
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-13
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-13
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-13
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-11
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		3e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		5e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		9e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-04
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 29/255 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  DG+  A+A  +K +K++  +  + +    H   V   + S              IAS
Sbjct: 65  FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 115
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           ++ +  V++W+    Q+L  +  H   VW + FS  D   +AS SDD +VKLW+ N  +L
Sbjct: 116 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLL 173
Query: 696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKT 755
               G S       ++V  V F  D G+++A  S D  +  ++ RN ++ L TL GH+ +
Sbjct: 174 QTLTGHS-------SSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSS 223
Query: 756 VSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGY 814
           V  V F  D  T+ SAS D T+KLW+ +          L + TGH++  N V        
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-------LQTLTGHSSSVNGVAFRPDGQT 276
Query: 815 VATGSETNEVFVYHK 829
           +A+ S+   V ++++
Sbjct: 277 IASASDDKTVKLWNR 291

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
           +  H   V  + FS  D   +AS SDD +VKLW+ N  +L    G S       ++V  V
Sbjct: 12  LEAHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-------SSVWGV 63
Query: 716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDN 774
            F  D G+++A  S D  +  ++ RN ++ L TL GH+ +V  V F  D  T+ SAS D 
Sbjct: 64  AFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 775 TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK 829
           T+KLW+ +          L + TGH++    V  S     +A+ S+   V ++++
Sbjct: 121 TVKLWNRNGQL-------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  AA+  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 34  FSPNGEWLAASSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 87  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 142 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 34  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 87  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G+ + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 142 ----GMCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNMVYIWN 268

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 30/259 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 55  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 108 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 162
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH-N 753
               G  + T+   ++ V  V F  D G  +   S D     +D  + +  L TLI   N
Sbjct: 163 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDN 216
Query: 754 KTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSV 810
             VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC------LKTYTGHKNEKYCIFANFSV 270
Query: 811 WDG-YVATGSETNEVFVYH 828
             G ++ +GSE N V++++
Sbjct: 271 TGGKWIVSGSEDNLVYIWN 289

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 30/259 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 53  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 106 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 160
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH-N 753
               G  + T+   ++ V  V F  D G  +   S D     +D  + +  L TLI   N
Sbjct: 161 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDN 214
Query: 754 KTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSV 810
             VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC------LKTYTGHKNEKYCIFANFSV 268
Query: 811 WDG-YVATGSETNEVFVYH 828
             G ++ +GSE N V++++
Sbjct: 269 TGGKWIVSGSEDNLVYIWN 287

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 37  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 90  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 144
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 145 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 253
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 48  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 101 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 155
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 156 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 264
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 265 GGKWIVSGSEDNLVYIWN 282

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 34  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 87  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 142 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 37  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 90  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 144
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 145 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 253
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 34  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 87  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 142 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 30  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 83  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 137
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 138 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 246
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 247 GGKWIVSGSEDNLVYIWN 264

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 36  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 89  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 143
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 144 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 252
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 253 GGKWIVSGSEDNLVYIWN 270

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 31  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 84  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 138
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 139 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 247
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 248 GGKWIVSGSEDNLVYIWN 265

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 27  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 80  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 134
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 135 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 243
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 244 GGKWIVSGSEDNLVYIWN 261

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 31  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 84  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 138
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 139 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 247
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 248 GGKWIVSGSEDNLVYIWN 265

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 37  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 90  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 144
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 145 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 253
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 32  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 85  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 139
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G  + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 140 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DNTLKLWD S          L ++TGH N K   F   SV 
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 248
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 249 GGKWIVSGSEDNLVYIWN 266

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
           F  +GE  A++  +K IK++          D  +       +  +S + W+S     +++
Sbjct: 34  FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
           S+ +  +++WDVS  + L  ++ H   V+  +F+     L+ SGS D SV++W +     
Sbjct: 87  SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
               G+ + T+   ++ V  V F  D G  +   S D     +D  + +     +   N 
Sbjct: 142 ----GMCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
            VS+VKF  +   +++A+ DN LKLWD S          L ++TGH N K   F   SV 
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
            G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNMVYIWN 268

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 97/264 (36%), Gaps = 92/264 (34%)
Query: 67  SLRQWL------DKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSF 118
           +L+ W+      ++ +RSV    CLHIF QI E V   HS+G++  +++PS   F M   
Sbjct: 101 NLKDWMNGRCTIEERERSV----CLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDV 156
Query: 119 NHVSFIEXXXXXXXXXXXHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT 178
             V                                                D  LVTA  
Sbjct: 157 VKVG-----------------------------------------------DFGLVTAMD 169
Query: 179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWY 238
            D  E + +    AY  H   V                                  T  Y
Sbjct: 170 QDEEEQTVLTPMPAYARHTGQVG---------------------------------TKLY 196
Query: 239 ASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKE 298
            SPE++ G   S   DI+ LG++LFEL  PFST  E+ RT++ +R+   PP    K+P E
Sbjct: 197 MSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCE 256
Query: 299 ASFCLWLLHPEPSGRPKMGELLQS 322
                 +L P P  RP+   ++++
Sbjct: 257 YVMVQDMLSPSPMERPEAINIIEN 280

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 36/286 (12%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC-----------DAIINENRDIHYPVVEMASRSKLSSIC 624
           F  DGE + A G NK  +V+             D+  N++ +        +S   + S+C
Sbjct: 72  FSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 625 WNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID-FSSADPTLLASGSDDG 683
           ++   K  +A+   + ++++WD+   +++  ++ HE+ ++S+D F S D   L SGS D 
Sbjct: 131 FSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LVSGSGDR 187
Query: 684 SVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 743
           +V++W +      L L +  G       V  V      G+ +A GS D  +  +D     
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDG-------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 744 I------PLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS- 795
           +         +  GH  +V  V F  D  ++VS S D ++KLW+L    ++      +S 
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 796 -----FTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPAL 836
                + GH +    V  +  D Y+ +GS+   V  + K    P L
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 99/261 (37%), Gaps = 86/261 (32%)
Query: 67  SLRQWLDKPKRSVDVYE---CLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSFNHV 121
           +L+ W+++ + S++  E   CLHIF QI E V   HS+G++  +++PS   F M     V
Sbjct: 147 NLKDWMNR-RCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKV 205
Query: 122 SFIEXXXXXXXXXXXHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL 181
                                                           D  LVTA   D 
Sbjct: 206 G-----------------------------------------------DFGLVTAMDQDE 218
Query: 182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASP 241
            E + +    AY TH   V                                  T  Y SP
Sbjct: 219 EEQTVLTPMPAYATHXGQVG---------------------------------TKLYMSP 245
Query: 242 EELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASF 301
           E++ G   S   DI+ LG++LFEL   FST  E+ R ++ +R+   P     K+P+E   
Sbjct: 246 EQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMM 305
Query: 302 CLWLLHPEPSGRPKMGELLQS 322
              +L P P+ RP+  +++++
Sbjct: 306 VQDMLSPSPTERPEATDIIEN 326

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 128/330 (38%), Gaps = 54/330 (16%)
Query: 576  FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
            F  DG  F  A  ++ I+V+E                D +  EN  +   V         
Sbjct: 897  FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 612  ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
                  ++    +++S  C + +++  +A  + +G +++ ++  ++V +    H++ V  
Sbjct: 957  AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1015
Query: 666  IDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSL 725
            I F +AD   L S S+D  +++W+      +  L     T+K         F L     L
Sbjct: 1016 IQF-TADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK--------DFRLLQDSRL 1065
Query: 726  AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 785
               S D  +  +++   +I           +S     DAT   S S D T K+W   +  
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL- 1124
Query: 786  SRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADP 845
                 +PLH   GH         S+    +ATG +  E+ +++ +          +   P
Sbjct: 1125 -----SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-----LHSCAP 1174
Query: 846  LSGPE-TDDAAQFISSVCWRGQSSNTLVAA 874
            +S  E T     +++ VC+    S TLV+A
Sbjct: 1175 ISVEEGTATHGGWVTDVCF-SPDSKTLVSA 1203

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 128/330 (38%), Gaps = 54/330 (16%)
Query: 576  FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
            F  DG  F  A  ++ I+V+E                D +  EN  +   V         
Sbjct: 890  FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 612  ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
                  ++    +++S  C + +++  +A  + +G +++ ++  ++V +    H++ V  
Sbjct: 950  AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008
Query: 666  IDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSL 725
            I F +AD   L S S+D  +++W+      +  L     T+K         F L     L
Sbjct: 1009 IQF-TADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK--------DFRLLQDSRL 1058
Query: 726  AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 785
               S D  +  +++   +I           +S     DAT   S S D T K+W   +  
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL- 1117
Query: 786  SRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADP 845
                 +PLH   GH         S+    +ATG +  E+ +++ +          +   P
Sbjct: 1118 -----SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-----LHSCAP 1167
Query: 846  LSGPE-TDDAAQFISSVCWRGQSSNTLVAA 874
            +S  E T     +++ VC+    S TLV+A
Sbjct: 1168 ISVEEGTATHGGWVTDVCF-SPDSKTLVSA 1196

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
           K  + S + +  V++W+   +  L +  E HE  V  + F+  DP+  ASG  D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT 748
           S+ Q+        ++ T + +       +PL     +   S D  I  +D + +K  + T
Sbjct: 169 SLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT 223
Query: 749 LIGHNKTVSYVKFVDA-TTLVSASTDNTLKLWDLS 782
           L GH   VS+  F      ++S S D TLK+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
           K  + S + +  V++W+   +  L +  E HE  V  + F+  DP+  ASG  D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT 748
           S+ Q+        ++ T + +       +PL     +   S D  I  +D + +K  + T
Sbjct: 169 SLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT 223
Query: 749 LIGHNKTVSYVKFVDA-TTLVSASTDNTLKLWDLS 782
           L GH   VS+  F      ++S S D TLK+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
           Y   ++ S  ++ +V+VWD      L  ++ H  RV+S+ F   D   + SGS D S+++
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRV 303
Query: 688 WSINQA----ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 743
           W +        L  H  ++ G ++ K N+            L  G+AD  +  +D++  +
Sbjct: 304 WDVETGNCIHTLTGHQSLTSG-MELKDNI------------LVSGNADSTVKIWDIKTGQ 350
Query: 744 IPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDL 781
             L TL G NK  S V  +  +   ++++S D T+KLWDL
Sbjct: 351 C-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 44/261 (16%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
           +  ++I S + +  ++VW     + L  +  H   VWS   S     ++ SGS D ++K+
Sbjct: 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKV 183
Query: 688 WSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
           W+      +  L     T++      C+       + +  GS D  +  +D+   +  L 
Sbjct: 184 WNAETGECIHTLYGHTSTVR------CMHL---HEKRVVSGSRDATLRVWDIETGQC-LH 233
Query: 748 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN---VKN 804
            L+GH   V  V++ D   +VS + D  +K+WD         +T LH+  GHTN      
Sbjct: 234 VLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPET------ETCLHTLQGHTNRVYSLQ 286
Query: 805 FVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWR 864
           F G+ V  G + T     +V   +    +        H    SG E  D           
Sbjct: 287 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTG------HQSLTSGMELKD----------- 329
Query: 865 GQSSNTLVAANSSGNIKILEM 885
               N LV+ N+   +KI ++
Sbjct: 330 ----NILVSGNADSTVKIWDI 346

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
           K  + S + +  V++W+   +  L +  E HE  V  + F+  DP+  ASG  D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
           S+ Q+     L     T   +  V  V  +PL     +   S D  I  +D + +K  + 
Sbjct: 169 SLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVA 222
Query: 748 TLIGHNKTVSYVKFVDAT-TLVSASTDNTLKLWDLS 782
           TL GH   VS+  F      ++S S D TLK+W+ S
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
           + WNS +   + S++ +  V +WD++      ++ +       H   V  + +     +L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 676 LASGSDDGSVKLWSI--NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
             S +DD  + +W    N      HL V   T    A V C+ F   S   LA GSAD  
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHL-VDAHT----AEVNCLSFNPYSEFILATGSADKT 299
Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
           +  +DLRN K+ L T   H   +  V +   + T L S+ TD  L +WDLS
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
           + WNS +   + S++ +  V +WD++      ++ +       H   V  + +     +L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 676 LASGSDDGSVKLWSI--NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
             S +DD  + +W    N      HL V   T    A V C+ F   S   LA GSAD  
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHL-VDAHT----AEVNCLSFNPYSEFILATGSADKT 299
Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
           +  +DLRN K+ L T   H   +  V +   + T L S+ TD  L +WDLS
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
           K  + S + +  V++W+   +  L +  E HE  V  + F+  DP+  ASG  D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
           S+ Q+     L     T   +  V  V  +PL     +   S D  I  +D + +K  + 
Sbjct: 169 SLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVA 222
Query: 748 TLIGHNKTVSYVKFVDAT-TLVSASTDNTLKLWDLS 782
           TL GH   VS+  F      ++S S D TLK+W+ S
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
           I S  ++ +V+VWD++  +++T+++ H   V S+  S  D +L AS   DG  +LW + +
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS-PDGSLCASSDKDGVARLWDLTK 227
Query: 693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 752
              L  +          A     Q      R     + +  I  +DL N  I +     H
Sbjct: 228 GEALSEMA---------AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEH 278
Query: 753 NKT-------VSYVKFVDATTLVSASTDNTLKLWDLS 782
             +       VS     D +TL S  TDN +++W +S
Sbjct: 279 QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS----RSQVL---TEMREHERRVWSIDFSSADPTL 675
           + WN  +   + S++ +  + +WD+S      +V+   T    H   V  + +     +L
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 676 LASGSDDGSVKLWSI--NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
             S +DD  + +W    N      H  V   T    A V C+ F   S   LA GSAD  
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSH-SVDAHT----AEVNCLSFNPYSEFILATGSADKT 297
Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
           +  +DLRN K+ L +   H   +  V++   + T L S+ TD  L +WDLS
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 43/212 (20%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
           Y   +I S   +  +++WD +  +    +  H   V  + +   D  ++ +GS D +V++
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRV 197
Query: 688 WSINQAILL----------LHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYY 737
           W +N   +L          LHL  + G + T                    S D  I  +
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT-------------------CSKDRSIAVW 238
Query: 738 DLRN-SKIPLC-TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS 795
           D+ + + I L   L+GH   V+ V F D   +VSAS D T+K+W+ S C        + +
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEF------VRT 291
Query: 796 FTGHTNVKNFVGLSVWDGYVATGSETNEVFVY 827
             GH   +    L   D  V +GS  N + ++
Sbjct: 292 LNGHK--RGIACLQYRDRLVVSGSSDNTIRLW 321

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 670 SADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS 729
           S+D     SGS DG ++LW +   +        +G  K   +V  V F LD+ R +   S
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRF---VGHTK---DVLSVAFSLDN-RQIVSAS 491
Query: 730 ADHRIYYYD-LRNSKIPLCTLI-GHNKTVSYVKFVDAT---TLVSASTDNTLKLWDLSMC 784
            D  I  ++ L   K  +     GH   VS V+F   T   T+VSAS D T+K+W+LS C
Sbjct: 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 785 TSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 830
             R       +  GHT   + V +S      A+G +   V ++  A
Sbjct: 552 KLR------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI 694
           S +++G +++WD++          H + V S+ FSS D   + SGS D ++KLW+     
Sbjct: 80  SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT---- 134
Query: 695 LLLHLGVSIGTIKTKAN---VCCVQFPLDSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLI 750
               LGV   T++ +++   V CV+F  +S   +      D  +  ++L N K+     I
Sbjct: 135 ----LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHI 189
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLS 782
           GH   ++ V    D +   S   D    LWDL+
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI 694
           S +++G +++WD++          H + V S+ FSS D   + SGS D ++KLW+     
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT---- 157
Query: 695 LLLHLGVSIGTIKTKAN---VCCVQFPLDSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLI 750
               LGV   T++ +++   V CV+F  +S   +      D  +  ++L N K+     I
Sbjct: 158 ----LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHI 212
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLS 782
           GH   ++ V    D +   S   D    LWDL+
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 644 VWDVSRSQVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSIN---QAILLLHL 699
           VWD+   Q +     HE  V S+ +  S D    ASGSDD + +L+ +    +  +    
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLRADREVAIYSKE 281
Query: 700 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD-LRNSKIPLCTLIGHNKTVSY 758
            +  G          V F L SGR L  G  D+ I  +D L+ S++ +  L GH   VS 
Sbjct: 282 SIIFGASS-------VDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSI--LFGHENRVST 331
Query: 759 VKFV-DATTLVSASTDNTLKLW 779
           ++   D T   S S D+TL++W
Sbjct: 332 LRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
           + WN  +   + S++ +  + +WD++   +   + + +     H   V  + +     +L
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 676 LASGSDDGSVKLWSI-NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRI 734
             S +DD  + +W   N         V   T    A V C+ F   S   LA GSAD  +
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHT----AEVNCLSFNPYSEFILATGSADKTV 302
Query: 735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
             +DLRN K+ L +   H   +  V++   + T L S+ TD  L +WDLS
Sbjct: 303 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
           + WN  +   + S++ +  + +WD++   +   + + +     H   V  + +     +L
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 676 LASGSDDGSVKLWSI-NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRI 734
             S +DD  + +W   N         V   T    A V C+ F   S   LA GSAD  +
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHT----AEVNCLSFNPYSEFILATGSADKTV 304
Query: 735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
             +DLRN K+ L +   H   +  V++   + T L S+ TD  L +WDLS
Sbjct: 305 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
           + WN  +   + S++ +  + +WD++   +   + + +     H   V  + +     +L
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 676 LASGSDDGSVKLWSI-NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRI 734
             S +DD  + +W   N         V   T    A V C+ F   S   LA GSAD  +
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHT----AEVNCLSFNPYSEFILATGSADKTV 306
Query: 735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
             +DLRN K+ L +   H   +  V++   + T L S+ TD  L +WDLS
Sbjct: 307 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 712 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 771
           + C+QF       +  G+ D  I  YD  N K  L  L GH+  V  +K+     LVS S
Sbjct: 125 ITCLQFE---DNYVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 772 TDNTLKLWDL--SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETNEVFVY 827
           TD T+++WD+    CT        H F GH +    + +  +    Y+ TGS  N + V+
Sbjct: 181 TDRTVRVWDIKKGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 712 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 771
           + C+QF       +  G+ D  I  YD  N K  L  L GH+  V  +K+     LVS S
Sbjct: 125 ITCLQFE---DNYVITGADDKXIRVYDSINKKF-LLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 772 TDNTLKLWDL--SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETNEVFVY 827
           TD T+++WD+    CT        H F GH +    + +  +    Y+ TGS  N + V+
Sbjct: 181 TDRTVRVWDIKKGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL 699
           V +W  S   +L   +M +    + S+ +   +   LA G+    V+LW + Q   L ++
Sbjct: 138 VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 196
Query: 700 ---GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 756
                 +G++   + +            L+ GS    I+++D+R ++  + TL GH++ V
Sbjct: 197 TSHSARVGSLSWNSYI------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 244
Query: 757 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 815
             +++  D   L S   DN + +W  +      +  PL +FT H      V    W   V
Sbjct: 245 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNV 302
Query: 816 -ATGSETNEVFV 826
            ATG  T++  +
Sbjct: 303 LATGGGTSDRHI 314

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL 699
           V +W  S   +L   +M +    + S+ +   +   LA G+    V+LW + Q   L ++
Sbjct: 127 VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 185
Query: 700 ---GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 756
                 +G++   + +            L+ GS    I+++D+R ++  + TL GH++ V
Sbjct: 186 TSHSARVGSLSWNSYI------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 233
Query: 757 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 815
             +++  D   L S   DN + +W  +      +  PL +FT H      V    W   V
Sbjct: 234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNV 291
Query: 816 -ATGSETNEVFV 826
            ATG  T++  +
Sbjct: 292 LATGGGTSDRHI 303

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 64/260 (24%)
Query: 576 FDRDGELFAAAGVNKKIKV-----FEC--------------------DAIINENRDIHYP 610
           FD  G+L A+   +  IK+     FEC                    D I++ +RD    
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 611 VVEMASRSKLSSIC----WNSYIK-----SQIASSNFEGVVQVWDVSRSQVLTEMREHER 661
           + E+ +   + +      W   ++     + IAS + +  V+VW V+  +   E+REH  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 662 RVWSIDFS------------------SADP-TLLASGSDDGSVKLWSINQAILLLHLGVS 702
            V  I ++                  S  P   L SGS D ++K+W ++  + L+ L   
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--- 334
Query: 703 IGTIKTKANVCCVQFPLDSGRSLAFGSADHR-IYYYDLRNSKIPLCTLIGHNKTVSYVKF 761
           +G       V        SG       AD + +  +D +N +  + TL  H   V+ + F
Sbjct: 335 VGHDNWVRGVL-----FHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDF 388
Query: 762 -VDATTLVSASTDNTLKLWD 780
              A  +V+ S D T+K+W+
Sbjct: 389 HKTAPYVVTGSVDQTVKVWE 408

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 634 ASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
           ASS+ +  +++WD+   + +  +       W++ F S D   LA+G+  G V ++ +   
Sbjct: 96  ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAF-SPDSQYLATGTHVGKVNIFGVES- 153
Query: 694 ILLLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 752
                 G    ++ T+   +  + +  D G+ LA G+ D  I  +D+   K+ L TL GH
Sbjct: 154 ------GKKEYSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKL-LHTLEGH 205
Query: 753 NKTVSYVKFV-DATTLVSASTDNTLKLWDL 781
              +  + F  D+  LV+AS D  +K++D+
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           +  +++    PV      S +   C  +   +   S++++  +++WDV+  +       H
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           +  V S+D      +++ SGS D ++K+W+I    L   LG +     ++  V   +   
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
           D   ++     D  +  ++L   +I     IGHN  ++ +    D T + SA  D  + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
           W+L+
Sbjct: 223 WNLA 226

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           +  +++    PV      S +   C  +   +   S++++  +++WDV+  +       H
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           +  V S+D      +++ SGS D ++K+W+I    L   LG +     ++  V   +   
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
           D   ++     D  +  ++L   +I     IGHN  ++ +    D T + SA  D  + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
           W+L+
Sbjct: 223 WNLA 226

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           +  +++    PV      S +   C  +   +   S++++  +++WDV+  +       H
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           +  V S+D      +++ SGS D ++K+W+I    L   LG +     ++  V   +   
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
           D   ++     D  +  ++L   +I     IGHN  ++ +    D T + SA  D  + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
           W+L+
Sbjct: 223 WNLA 226

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           +  +++    PV      S +   C  +   +   S++++  +++WDV+  +       H
Sbjct: 41  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           +  V S+D      +++ SGS D ++K+W+I    L   LG +     ++  V   +   
Sbjct: 101 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 157
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
           D   ++     D  +  ++L   +I     IGHN  ++ +    D T + SA  D  + L
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 779 WDLS 782
           W+L+
Sbjct: 217 WNLA 220

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           +  +++    PV      S +   C  +   +   S++++  +++WDV+  +       H
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           +  V S+D      +++ SGS D ++K+W+I    L   LG +     ++  V   +   
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
           D   ++     D  +  ++L   +I     IGHN  ++ +    D T + SA  D  + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
           W+L+
Sbjct: 223 WNLA 226

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 22/189 (11%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL 699
           V +W  S   +L   +M +    + S+ +   +   LA G+    V+LW + Q   L ++
Sbjct: 47  VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 105
Query: 700 ---GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 756
                 +G++   + +            L+ GS    I+++D+R ++  + TL GH++ V
Sbjct: 106 TSHSARVGSLSWNSYI------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 153
Query: 757 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 815
             +++  D   L S   DN + +W  +      +  PL +FT H      V    W   V
Sbjct: 154 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNV 211
Query: 816 -ATGSETNE 823
            ATG  T++
Sbjct: 212 LATGGGTSD 220

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
           T  Y + E L G    +   D+Y LG++ FE+  PFSTG E+   +  LR   +  PP  
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
              K   E      L+  +P+ RP    LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
           T  Y + E L G    +   D+Y LG++ FE+  PFSTG E+   +  LR   +  PP  
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
              K   E      L+  +P+ RP    LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 38/210 (18%)
Query: 595 FECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT 654
           + C A+ +  RD  +P V    R  + ++ W  +      SS+F+  ++VWD +  Q   
Sbjct: 82  YTCKAVCSIGRD--HPDVH---RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-A 135
Query: 655 EMREHERRVWSIDFS--SADPTLLASGSDDGSVKLWSINQA----ILLLHLGVSIGTIKT 708
           ++   E  V+S   S  S    L+A G+    V+L  +       IL  H          
Sbjct: 136 DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH---------- 185
Query: 709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL---------------IGHN 753
           +  +  V +       LA  SAD R+  +D+R +   L TL                 HN
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245
Query: 754 KTVSYVKFV-DATTLVSASTDNTLKLWDLS 782
             V+ + F  D   L++  TDN ++LW+ S
Sbjct: 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
           V R Q+ T   +R H  +++++ + + D  LL S S DG + +W   + N+        V
Sbjct: 40  VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
               +++   + C   P  SG  +A G  D+    Y+L+    N ++    L GH   +S
Sbjct: 91  HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
             +F+D   +V++S D T  LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
           V R Q+ T   +R H  +++++ + + D  LL S S DG + +W   + N+        V
Sbjct: 51  VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK--------V 101
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
               +++   + C   P  SG  +A G  D+    Y+L+    N ++    L GH   +S
Sbjct: 102 HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 158
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
             +F+D   +V++S D T  LWD+
Sbjct: 159 CCRFLDDNQIVTSSGDTTCALWDI 182

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
           V R Q+ T   +R H  +++++ + + D  LL S S DG + +W   + N+        V
Sbjct: 40  VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
               +++   + C   P  SG  +A G  D+    Y+L+    N ++    L GH   +S
Sbjct: 91  HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
             +F+D   +V++S D T  LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
           +  +++    PV      S +   C  +   +   S++++  +++WDV+  +       H
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
           +  V S+D       ++ SGS D ++K+W+I    L   LG +     ++  V   +   
Sbjct: 107 KSDVXSVDIDKKASXII-SGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
           D   ++     D  +  ++L   +I     IGHN  ++ +    D T + SA  D  + L
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 779 WDLS 782
           W+L+
Sbjct: 223 WNLA 226

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
           V R Q+ T   +R H  +++++ + + D  LL S S DG + +W   + N+        V
Sbjct: 40  VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
               +++   + C   P  SG  +A G  D+    Y+L+    N ++    L GH   +S
Sbjct: 91  HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
             +F+D   +V++S D T  LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
           V R Q+ T   +R H  +++++ + + D  LL S S DG + +W   + N+        V
Sbjct: 40  VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
               +++   + C   P  SG  +A G  D+    Y+L+    N ++    L GH   +S
Sbjct: 91  HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
             +F+D   +V++S D T  LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 618 SKLSSICWNSYIKSQIASSNFEGVVQVWDVSR-------------SQVLTEMREHERRVW 664
           S + ++ +N+   + +AS    G + +WD+++              Q ++ + E     W
Sbjct: 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173
Query: 665 SIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQF-PLDSGR 723
           +   +     + AS        +W +     ++HL  +      K  +  V++ P +S R
Sbjct: 174 NQSLAH----VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229
Query: 724 -SLAFGS-ADHRIYYYDLRNSKIPLCTL-IGHNKTVSYVKFV--DATTLVSASTDNTLKL 778
            + A GS  D  I  +DLRN+  PL TL  GH K +  + +   D   L+S+  DNT+ L
Sbjct: 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289
Query: 779 WD 780
           W+
Sbjct: 290 WN 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	886
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-05
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-12
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-12
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	8e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-11
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	3e-11
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-11
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-11
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	0.003
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-05
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-10
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-10
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-10
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-09
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-09
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-09
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-09
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-09
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-09
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-09
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	6e-09
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	7e-09
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-09
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	9e-09
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-08
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-08
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	6e-08
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	6e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-08
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-07
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-07
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-07
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-07
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-06
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	7e-04
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-06
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	5e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	5e-06
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	5e-06
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	9e-06
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-05
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-05
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-05
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-05
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-05
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	5e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-05
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.7 bits (239), Expect = 3e-22
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
              +       S   +   ++WDV           HE  + +I F   +    A+GSDD 
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDA 248

Query: 684 SVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 743
           + +L+ +          ++         +  V F    GR L  G  D     +D   + 
Sbjct: 249 TCRLFDLRAD----QELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKAD 303

Query: 744 IPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
                L GH+  VS +    D   + + S D+ LK+W+
Sbjct: 304 -RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 558 DLNQGDLLNS----SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE 613
           D+ +G    +     + + ++ F  +G  FA    +   ++F+                 
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR-----ADQELMTYSH 266

Query: 614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADP 673
                 ++S+ + S     + +   +    VWD  ++     +  H+ RV  +  +  D 
Sbjct: 267 DNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DG 324

Query: 674 TLLASGSDDGSVKLWS 689
             +A+GS D  +K+W+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 45/293 (15%), Positives = 90/293 (30%), Gaps = 59/293 (20%)

Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
           K+   ++  +    +  V R Q+ T   +R H  +++++ + + D  LL S S DG + +
Sbjct: 23  KACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLII 81

Query: 688 WSINQAILLLHLGVSIGTIKTKA------------------------------------- 710
           W       +  + +    + T A                                     
Sbjct: 82  WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141

Query: 711 -NVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVS 769
                          +   S D     +D+   +            +S     D    VS
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201

Query: 770 ASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK 829
            + D + KLWD+             +FTGH +  N +         ATGS+     ++  
Sbjct: 202 GACDASAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 830 AFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
                 ++++ ++               I+SV +  +S   L+A     N  +
Sbjct: 256 RADQELMTYSHDNII-----------CGITSVSF-SKSGRLLLAGYDDFNCNV 296

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (230), Expect = 3e-21
 Identities = 56/305 (18%), Positives = 98/305 (32%), Gaps = 56/305 (18%)

Query: 571 VCSLSFDRDGELFAAAGVNKKIKVFE---------------------------------- 596
           V  + F     +  +A  +  IKV++                                  
Sbjct: 20  VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 597 CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEM 656
              I   +      +  M       S          I S++ +  +++W+V     +   
Sbjct: 80  DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 657 REHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL-------------GVSI 703
             H   V  +  +  D TL+AS S+D +V++W +        L               S 
Sbjct: 140 TGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 198

Query: 704 GTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV- 762
            +  ++A     +     G  L  GS D  I  +D+      L TL+GH+  V  V F  
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHS 257

Query: 763 DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETN 822
               ++S + D TL++WD            + +   H +    +       YV TGS   
Sbjct: 258 GGKFILSCADDKTLRVWDYKN------KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

Query: 823 EVFVY 827
            V V+
Sbjct: 312 TVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (198), Expect = 4e-17
 Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 28/193 (14%)

Query: 608 HYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID 667
            Y V       +   +   +   + IAS + +  V+VW V+  +   E+REH   V  I 
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

Query: 668 F-------------------SSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
           +                   S      L SGS D ++K+W ++  + L+ L      +  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL------VGH 246

Query: 709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF-VDATTL 767
              V  V F    G+ +   + D  +  +D +N +  + TL  H   V+ + F   A  +
Sbjct: 247 DNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 768 VSASTDNTLKLWD 780
           V+ S D T+K+W+
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 45/247 (18%), Positives = 84/247 (34%), Gaps = 21/247 (8%)

Query: 645 WDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIG 704
           W     +    +  H   V  + F     +++ S S+D ++K+W           G    
Sbjct: 3   WIPRPPEKYA-LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYET-------GDFER 53

Query: 705 TIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDA 764
           T+K   +         SG+ LA  SAD  I  +D +  +         +   S     + 
Sbjct: 54  TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 765 TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEV 824
             +VSAS D T+K+W++           + +FTGH      V  +     +A+ S    V
Sbjct: 114 DHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 825 FVYHKAFPMPALSFNFNHADPLS------GPETDDAAQFISSVCWRGQSSNTLVAANSSG 878
            V+  A          +               +  +    S     G+    L++ +   
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 879 NIKILEM 885
            IK+ ++
Sbjct: 228 TIKMWDV 234

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 5e-11
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 560 NQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSK 619
           +    ++ +    +    + G    +   +K IK+++     +    +      +   + 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV----STGMCLM---TLVGHDNW 249

Query: 620 LSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASG 679
           +  + ++S     I S   +  ++VWD    + +  +  HE  V S+DF       + +G
Sbjct: 250 VRGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTG 307

Query: 680 SDDGSVKLW 688
           S D +VK+W
Sbjct: 308 SVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 25/274 (9%)

Query: 617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLL 676
           RS ++ + ++    S + S++ +  ++VWD         ++ H   V  I F  +     
Sbjct: 17  RSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK--- 72

Query: 677 ASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYY 736
                  +     +   +        I T+    +       + +G  +   S D  I  
Sbjct: 73  -----LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 737 YDLRNSKIPLCTLIGHNKTVSYVKF-VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS 795
           ++++     + T  GH + V  V+   D T + S S D T+++W ++             
Sbjct: 128 WEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK------ECKAE 180

Query: 796 FTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAA 855
              H +V   +  +    Y +    T              LS + +    +    T    
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

Query: 856 Q-------FISSVCWRGQSSNTLVAANSSGNIKI 882
                   ++  V +       +++      +++
Sbjct: 241 MTLVGHDNWVRGVLF-HSGGKFILSCADDKTLRV 273

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.4 bits (212), Expect = 2e-18
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 23/207 (11%)

Query: 595 FECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT 654
                +   +       + ++    ++++  +      IA+ + +  V+VWD     ++ 
Sbjct: 182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241

Query: 655 EMRE-------HERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGT-- 705
            +         H+  V+S+ F+  D   + SGS D SVKLW++  A              
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 706 ----IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 761
               I  K  V  V    +    +  GS D  + ++D ++   PL  L GH  +V  V  
Sbjct: 301 EVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAV 358

Query: 762 V-------DATTLVSASTDNTLKLWDL 781
                   +     + S D   ++W  
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (202), Expect = 3e-17
 Identities = 75/411 (18%), Positives = 141/411 (34%), Gaps = 53/411 (12%)

Query: 495 PLVRHSQLSSDGRTSKPLVNERSSINNLGSKEGYSEGRRSGWINPFLEGLCKYLSFSKLR 554
            LV ++Q ++  +   P + +  S +   + +  +      + NP             L 
Sbjct: 2   YLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILY-NP------------ALP 48

Query: 555 VKADLNQGDLLNSSNLVCSLSFDRDGELFAAAG----------VNKKIKVFECDAIINEN 604
            + D+     L+ +++VC + F  DGE  A                 +     D+  N++
Sbjct: 49  REIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 605 RDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVW 664
            +        +S   + S+C++   K     +    +      +R  V+      +    
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 665 SIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS 724
              F       L SGS D +V++W        L  G    T+  +  V  V      G+ 
Sbjct: 169 LDYFP--SGDKLVSGSGDRTVRIWD-------LRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 725 LAFGSADHRIYYYDLRNSKI------PLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLK 777
           +A GS D  +  +D     +         +  GH  +V  V F  D  ++VS S D ++K
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 778 LWDL------SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAF 831
           LW+L      S   +    T   ++ GH +    V  +  D Y+ +GS+   V  + K  
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 832 PMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
             P L     H + +       +    +     G   N     +     +I
Sbjct: 340 GNPLLMLQ-GHRNSVI------SVAVANGSSL-GPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.4 bits (181), Expect = 1e-14
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 571 VCSLSFDRDGELFAAAGVNKKIKVFECD-----AIINENRDIHYPVVEMASRSKLSSICW 625
           V S+ F RDG+   +  +++ +K++        +           V  +  +  + S+  
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 626 NSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFS-----SADPTLLASGS 680
                  I S + +  V  WD      L  ++ H   V S+  +       +  + A+GS
Sbjct: 317 TQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 681 DDGSVKLWSINQ 692
            D   ++W   +
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (150), Expect = 8e-11
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 15/177 (8%)

Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
              DG+  AA  +++ ++V++ +      R           +  + S+ + +     + S
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVS 271

Query: 636 SNFEGVVQVWDVSRSQVLTEM------------REHERRVWSIDFSSADPTLLASGSDDG 683
            + +  V++W++  +   ++               H+  V S+  +  +   + SGS D 
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDR 330

Query: 684 SVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR 740
            V  W       LL L     ++ + A         +     A GS D +   +  +
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE-YNVFATGSGDCKARIWKYK 386

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 5e-15
 Identities = 36/168 (21%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 621 SSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGS 680
           +++    +    I S++ +  ++VW+ S  + +  +  H+R +  + +      L+ SGS
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGS 195

Query: 681 DDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR 740
            D +++LW I     L            + +   V+      + +  G+ D +I  +DL 
Sbjct: 196 SDNTIRLWDIECGACLRV---------LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 741 NSK--------IPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWD 780
            +         + L TL+ H+  V  ++F D   +VS+S D+T+ +WD
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 8e-13
 Identities = 37/295 (12%), Positives = 96/295 (32%), Gaps = 50/295 (16%)

Query: 567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFE------------------------------ 596
           +S  V  L +D   +   +   +  IK+++                              
Sbjct: 14  TSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71

Query: 597 CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEM 656
                    D++   +         ++    +    + + + +  + VWD++    +T  
Sbjct: 72  SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131

Query: 657 REHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQ 716
           R       +++    D   + S S D ++K+W+ +    +  L           +   + 
Sbjct: 132 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL---------NGHKRGIA 182

Query: 717 FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTL 776
                 R +  GS+D+ I  +D+         ++  ++ +      D   +VS + D  +
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240

Query: 777 KLWDLS---MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG-YVATGSETNEVFVY 827
           K+WDL       +      L +   H+     +    +D   + + S  + + ++
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL---QFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 8e-07
 Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 50/288 (17%)

Query: 627 SYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVK 686
            Y   +I S   +  +++WD +  +    +  H   V  + +        +S S      
Sbjct: 22  QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 81

Query: 687 LWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGR----------------------- 723
           + +      L+H   ++  ++    +        S                         
Sbjct: 82  VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141

Query: 724 --------SLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNT 775
                    +   S D  I  ++    +  + TL GH + ++ +++     +VS S+DNT
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQY-RDRLVVSGSSDNT 199

Query: 776 LKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH-KAFPMP 834
           ++LWD+           L    GH  +   +     +  + +G+   ++ V+   A   P
Sbjct: 200 IRLWDIECG------ACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDP 251

Query: 835 ALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
                      L           +  + +       +V+++    I I
Sbjct: 252 RAPAGTLCLRTLVEHS-----GRVFRLQF---DEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 40/211 (18%), Positives = 69/211 (32%), Gaps = 45/211 (21%)

Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN----QAILLLHLG-VSIGT 705
           Q +    E  + V+ + +   D   + SG  D ++K+W  N    + IL  H G V    
Sbjct: 6   QRIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 706 IKTKANVCCVQFPLDSGRSLAFGSADH----------------------------RIYYY 737
              +  +            +  G   +                             ++  
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 738 DLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFT 797
                      L+GH   V+ V F D   +VSAS D T+K+W+ S C        + +  
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTC------EFVRTLN 175

Query: 798 GHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
           GH      +     D  V +GS  N + ++ 
Sbjct: 176 GHKRGIACL--QYRDRLVVSGSSDNTIRLWD 204

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
            + T +Y SPE++     +  SDI+ LG LL+EL    P  T   +      +R      
Sbjct: 174 FVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRR 233

Query: 290 QLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFL 325
            +  ++  E       +L+ +   RP + E+L++  +
Sbjct: 234 -IPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI 269

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 1e-12
 Identities = 31/216 (14%), Positives = 62/216 (28%), Gaps = 35/216 (16%)

Query: 659 HERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTK------ANV 712
           H+  ++S+       +   S S DG +K+W             S      K        +
Sbjct: 13  HDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 713 CCVQFPLDSGRSLAFGSADHRIYYYDLRN---------SKIPLCTLIGHNKTVSYVKF-- 761
             ++        +A  S    + +Y +            K+ L        +   +K+  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 762 ----VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS---FTGHTNVKNFVGLSVW--- 811
               + +  LV+     T  +W             L+          V++ +  S +   
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 812 -----DGYVATGSETNEVFVYHKAFPMPALSFNFNH 842
                 G +ATG     V +   +   P  +F   H
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQH 225

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 7e-12
 Identities = 37/300 (12%), Positives = 86/300 (28%), Gaps = 42/300 (14%)

Query: 622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMR------------EHERRVWSIDFS 669
           S+   +   S   S + +G ++VWD                        H   + +I+  
Sbjct: 19  SVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 75

Query: 670 SADPTLLASGSDDGSVKLWSINQ----AILLLHLGVSIGTIKTKANVCCVQFPLDSGRS- 724
           + +  L+A+ S  G +  + I +      ++      + +   K +   +++   + R  
Sbjct: 76  AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 135

Query: 725 ---LAFGSADHRIYYYDLRNSKIPLCTL-----------------IGHNKTVSYVKFVDA 764
              L         Y +          +L                 +  ++  + V   + 
Sbjct: 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 195

Query: 765 TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEV 824
             + +   + T+++ +LS           HS   ++N    V  S     +A   ++N  
Sbjct: 196 GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 255

Query: 825 FVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQS--SNTLVAANSSGNIKI 882
                                 S   +       S V     +    TL +A   G ++ 
Sbjct: 256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 315

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 36/305 (11%), Positives = 87/305 (28%), Gaps = 54/305 (17%)

Query: 560 NQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFEC---DAIINENRDIHYPVVEMAS 616
           ++  L +   L        +  L A    +  +  +     D       +    +     
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118

Query: 617 RSKLSSICW----NSYIKSQIASSNFEGVVQVWDVSRSQ------------------VLT 654
           +    ++ W    +  +  ++ +++ +G   +W                         + 
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178

Query: 655 EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCC 714
                 +   S+D S  +  L+A+G ++G+V++  ++    L +       I    ++  
Sbjct: 179 SPMTPSQFATSVDIS--ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 715 VQFPLDSGRSLAFGSADHRIYYYDLRN---------------SKIPLCTLIGHNKTVSYV 759
           V+F        A     +      L                 S         H+  V  +
Sbjct: 237 VKFSPQGSLL-AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 760 KFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN----VKNFVGLSVWDGY 814
            F     TL SA  D  L+ WD+           + +   H +     ++ + +      
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTK------ERITTLNMHCDDIEIEEDILAVDEHGDS 349

Query: 815 VATGS 819
           +A   
Sbjct: 350 LAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 5e-05
 Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 34/231 (14%)

Query: 563 DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSS 622
             +  S    S+     G L A    N  +++ E   +           +   S S  S 
Sbjct: 179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 623 ICWNSYIKSQIASS-NFEGVVQVWD-------------VSRSQVLTEMREHERRVWSIDF 668
                     IA   N  G + +++                SQ       H   V S+ F
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 669 SSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFG 728
           + +  TL  S   DG ++ W +     +  L +    I+ + +   +      G SLA  
Sbjct: 298 NDSGETL-CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED--ILAVDEH-GDSLAEP 353

Query: 729 SADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLW 779
                   +D++  K    + +G +            +L     D +++ +
Sbjct: 354 GV------FDVKFLKKGWRSGMGADLN---------ESLCCVCLDRSIRWF 389

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 1e-12
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
           T  + +PE         + D+Y  G+ + E+     P+S  +   +    +   V P   
Sbjct: 176 TPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASF 234

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFL 325
                 E        +      R  + +LL   F 
Sbjct: 235 DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
           T ++ +PE +         DI+ LG++  E+     P+              +     Q 
Sbjct: 179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQN 238

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFL--NEPRDSM 332
             K       F    L  +   R    ELLQ +FL   +P  S+
Sbjct: 239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSL 282

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 65.5 bits (159), Expect = 8e-12
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH--RVLPPQL 291
            +A+PE   G PV   +D++ +GVL + L     PF  GE    T+ +++     +    
Sbjct: 190 EFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG-GENDDETLRNVKSCDWNMDDSA 248

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDEE 348
                ++   F   LL  +P+ R  + + L+  +L        + +       +I + 
Sbjct: 249 FSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDS 306

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRV--- 286
             T +Y +PE L       + D++ LGV+++ L C   PF            ++ R+   
Sbjct: 174 CYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFY-SNHGLAISPGMKTRIRMG 232

Query: 287 ---LPPQLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNE----PRDSMEEREAA 338
               P     +  +E       LL  EP+ R  + E +   ++ +    P+  +      
Sbjct: 233 QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVL 292

Query: 339 IELREQID--EEELLLEFLLLVQQRKQESAKKLQD 371
            E +E+ +  +EE+      +    +Q   KK++D
Sbjct: 293 KEDKERWEDVKEEMTSALATMRVDYEQIKIKKIED 327

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 5/155 (3%)

Query: 221 KKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTR 277
           ++        LL     Y +PE      VS A+D++ LG L++ L     PF     +  
Sbjct: 152 RQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQI 211

Query: 278 TMSSLRHRVLPPQLLLK-FPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEER 335
             + +       +   K    EA  F   LL  E   R    E LQ  +L +  + +  +
Sbjct: 212 IENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIERVSTK 271

Query: 336 EAAIELREQIDEEELLLEFLLLVQQRKQESAKKLQ 370
                   +     +  +  ++V   +      ++
Sbjct: 272 VIRTLKHRRYYHTLIKKDLNMVVSAARISCGGAIR 306

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 235 TNWYASPEELAGAPVSC-ASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ 290
           T  Y +PE L          D++  G++L  +     P+    +  +  S  + +     
Sbjct: 168 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN 227

Query: 291 LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
              K      +    +L   PS R  + ++ +  + N+P
Sbjct: 228 PWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP 266

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
           T  Y  PE + G       D++ LGVL +E      PF     +       R     P  
Sbjct: 167 TLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDF 226

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNE 327
           +    + A      LL   PS RP + E+L+  ++  
Sbjct: 227 V---TEGARDLISRLLKHNPSQRPMLREVLEHPWITA 260

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 44  LSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGI 103
           L G   +   +   +     G   + + L K  +  D         ++   +   HS+ +
Sbjct: 71  LYGYFHDATRVYLILEYAPLGT--VYRELQKLSK-FDEQRTATYITELANALSYCHSKRV 127

Query: 104 VVHNVRPSCFVMSSFNHV 121
           +  +++P   ++ S   +
Sbjct: 128 IHRDIKPENLLLGSAGEL 145

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHR--VLPP 289
           T  Y +PE LA  P S A D + +GV+ + L C   PF   E   +    +         
Sbjct: 172 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFY-DENDAKLFEQILKAEYEFDS 230

Query: 290 QLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAI--ELREQID 346
                    A  F   L+  +P  R    + LQ  ++       +    ++  ++++   
Sbjct: 231 PYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFA 290

Query: 347 EEEL 350
           + + 
Sbjct: 291 KSKW 294

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 7e-11
 Identities = 16/68 (23%), Positives = 28/68 (41%)

Query: 713 CCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAST 772
                       +A GS D  I+ Y ++     +  L  H   V+ + +   +TLVS+  
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA 277

Query: 773 DNTLKLWD 780
           D  +K W+
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 3e-08
 Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 622 SICWNSYIKSQIASSNFEGVVQVWDVSRS-QVLTEMREHERRVWSIDFSSADPTLLASGS 680
                   +  +A+ + +  + ++ V R  +++  +  H+  V ++ +    P+ L S  
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE--TPSTLVSSG 276

Query: 681 DDGSVKLWSI 690
            D  +K W++
Sbjct: 277 ADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 745 PLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLS 782
            L T+ GHNK ++ +       L+S S D  +  W  S
Sbjct: 5   VLKTISGHNKGITALTV---NPLISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
           +VL  +  H + + ++  +      L SGS DG +  WS +
Sbjct: 4   EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS 39

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRV--LPP 289
           T  + +PE +   P+   +D++ +GV+ + L     PF  G+ K  T++++         
Sbjct: 179 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL-GDTKQETLANVSAVNYEFED 237

Query: 290 QLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIE 340
           +        A  F   LL  +P  R  + + LQ  ++ +P+D+ +   +A  
Sbjct: 238 EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI-KPKDTQQALSSAWS 288

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 2e-10
 Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 51/280 (18%)

Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSS-------------------- 670
           ++I S + +  ++VW     + L  +  H   VWS                         
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 87

Query: 671 --------ADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSG 722
                      T+      +  V   S +  + +  +           +V  V+     G
Sbjct: 88  ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 147

Query: 723 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLS 782
           R +  G+ D  +  +D       L TL GH   V  ++F D   +VS S D ++++WD+ 
Sbjct: 148 RRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVE 205

Query: 783 MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNH 842
                     +H+ TGH ++    G+ + D  + +G+  + V ++         +    +
Sbjct: 206 TG------NCIHTLTGHQSL--TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 257

Query: 843 ADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
                        +  S+V     + N ++ ++  G +K+
Sbjct: 258 -------------KHQSAVTCLQFNKNFVITSSDDGTVKL 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 8e-10
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 16/165 (9%)

Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNF 638
           DG    +  ++  I+V+          D+             S         + + S N 
Sbjct: 186 DGIHVVSGSLDTSIRVW----------DVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 235

Query: 639 EGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLH 698
           +  V++WD+   Q L  ++   +   ++     +   + + SDDG+VKLW +     + +
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 699 LGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADH----RIYYYDL 739
           L V++ +  +   V  ++   ++    A GS +     ++   D 
Sbjct: 296 L-VTLESGGSGGVVWRIRAS-NTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 46/338 (13%), Positives = 94/338 (27%), Gaps = 58/338 (17%)

Query: 575 SFDRDGELFAAAGVNKKIKVFE------------------------------CDAIINEN 604
                G    +   +  +KV+                                     + 
Sbjct: 22  CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 81

Query: 605 RDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVW 664
            +              S++      + ++ S + +  ++VWD+   Q    +      V 
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ---CLHVLMGHVA 138

Query: 665 SIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS 724
           ++     D   + SG+ D  VK+W       L  L         + +   V      G  
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL---------QGHTNRVYSLQFDGIH 189

Query: 725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMC 784
           +  GS D  I  +D+      + TL GH    S ++      LVS + D+T+K+WD+   
Sbjct: 190 VVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMEL-KDNILVSGNADSTVKIWDIKTG 247

Query: 785 TSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHAD 844
                    +          F        +V T S+   V ++         +     + 
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQF-----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 845 PLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
              G         +  +     +       + +G  + 
Sbjct: 303 GSGGV--------VWRIRAS-NTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 745 PLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
               L GH+  V          +VS S DNTLK+W             L +  GHT 
Sbjct: 8   SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG------KCLRTLVGHTG 58

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 4/108 (3%)

Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTL 767
               + C+QF    G  +  GS D+ +  +     K  L TL+GH   V   +  D   +
Sbjct: 16  DDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRDNIII 71

Query: 768 VSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 815
             ++          +      +     +       +  V     D  +
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 7/127 (5%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
            LV   Q  K+ D  +    ++++                +ASPE  + +  S  SD++ 
Sbjct: 132 CLVGENQVIKVSDFGMTRFVLDDQYTSSTG----TKFPVKWASPEVFSFSRYSSKSDVWS 187

Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP 314
            GVL++E+F            +  +  +       +  L                P  RP
Sbjct: 188 FGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRP 247

Query: 315 KMGELLQ 321
               LL+
Sbjct: 248 AFSRLLR 254

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 3e-10
 Identities = 30/267 (11%), Positives = 79/267 (29%), Gaps = 13/267 (4%)

Query: 568 SNLVCSLSF--DRDGELFAAAGVNKKIKVFEC-DAIINENRDIHYPVVEMASRSKLSSIC 624
           S++V ++ F   +  +   +   + K+ V+       + + +++           +S I 
Sbjct: 63  SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 625 WNS-YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
           W+    +  +     +             L E+  H +R+ +     + P    +  DDG
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 684 SVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 743
           SV  +                      +V       +   ++                 K
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 744 IPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK 803
                       +  + ++D+    +   D T+++WD++          +  +T      
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT------SKCVQKWTLDKQQL 296

Query: 804 NFVGLSVW---DGYVATGSETNEVFVY 827
               + V    +G + + S    +  Y
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 8e-08
 Identities = 10/69 (14%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMR--EHERRVWSIDFSSADPTLLASGSD 681
             +     + A+   +  ++VWDV+ S+ + +    + +     +   +     + S S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 682 DGSVKLWSI 690
           DG++  + +
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 9e-07
 Identities = 28/217 (12%), Positives = 54/217 (24%), Gaps = 9/217 (4%)

Query: 568 SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNS 627
           +  +  +S+D +G      G  +           +    +          +         
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFIS--WDSGNSLGEVSGHSQRINACHLKQSRP 172

Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
                +         Q      S       +    V  ++FS      + +   D  +  
Sbjct: 173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232

Query: 688 WSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK-IPL 746
           +              I   +               +  A   AD  I  +D+  SK +  
Sbjct: 233 FDGKSG----EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288

Query: 747 CTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDL 781
            TL         V  V      ++S S D TL  ++L
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 34/280 (12%), Positives = 76/280 (27%), Gaps = 17/280 (6%)

Query: 609 YPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ---VLTEMREHERRVWS 665
            P      R+  + + ++    +          V+  D   S+   V+         V +
Sbjct: 9   IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 666 IDFS-SADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT--KANVCCVQFPLDSG 722
           + FS       L SG + G V +W          + V++ +        +  + +  +  
Sbjct: 69  VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 723 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLS 782
           R    G        +   +S   L  + GH++ ++      +  + S +  +   +    
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188

Query: 783 MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNH 842
               +   +   +     +    V  S   G           FV           F+   
Sbjct: 189 GPPFKFSASD-RTHHKQGSFVRDVEFSPDSGE----------FVITVGSDRKISCFDGKS 237

Query: 843 ADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
            + L   E D               S       +   I++
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.8 bits (144), Expect = 3e-10
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
           T  Y SPE+  G  V   SD+Y LG +L+E+     PF+     +     +R   +PP  
Sbjct: 177 TAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSA 236

Query: 292 LLK-FPKEA-SFCLWLLHPEPSGRPKMGELLQSEFL 325
             +    +  +  L  L   P  R +    ++++ +
Sbjct: 237 RHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLV 272

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 4e-10
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKA 710
           Q++   +  +  +  I       +LL   S DGS+ ++  +     + L   + +++ K 
Sbjct: 2   QIVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDL---LQSLRYKH 57

Query: 711 NVCCVQFPLDSGRSLAFGSADHRIYYYDLRN 741
            + C  F  ++   +  G+    I   DL  
Sbjct: 58  PLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 24/174 (13%), Positives = 48/174 (27%), Gaps = 14/174 (8%)

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSI---DFSSADPTLLASGS 680
                  S++        VQ + +   +      E     + I        +    A  S
Sbjct: 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213

Query: 681 DDGSVKLWSINQAILLLHLG---------VSIGTIKTKANVCCVQFPLDSGRSLAFGSAD 731
            DG V +   +      +           +++        V  ++F       L    +D
Sbjct: 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSD 272

Query: 732 HRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 785
             I  ++L+  K  +      N+            L  A++D+T K       T
Sbjct: 273 GIISCWNLQTRK-KIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 32/328 (9%), Positives = 80/328 (24%), Gaps = 33/328 (10%)

Query: 568 SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNS 627
            + +  +       L      +  + V++     +        +  +  +  L    +  
Sbjct: 11  KDYISDIKIIPSKSLLLITSWDGSLTVYK----FDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
               QI     +G +   D+  S     +  +E  +            L + S DG +++
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 688 WSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
                    +   V             +     +   L  G  + ++ ++ L   +    
Sbjct: 127 IDPRNYGDGVIA-VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 748 TLIGHNKTVSYVKFV----DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF------- 796
           T+                 +      +S D  + +            +   +F       
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245

Query: 797 --TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDA 854
             T      N +  S    ++ T      +  ++        +F   + D          
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS--------- 296

Query: 855 AQFISSVCWRGQSSNTLVAANSSGNIKI 882
              +  +       N L  A S    K 
Sbjct: 297 ---VVKIACSD---NILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 14/136 (10%), Positives = 47/136 (34%), Gaps = 11/136 (8%)

Query: 571 VCSLSFDRDGELFAAAGVNKKIKVFECD--------AIINENRDIHYPVVEMASRSKLSS 622
                  ++ E +A + ++ ++ V   D        +     R     + +      ++S
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDD 682
           I ++   K    + + +G++  W++   + +    +       +  +     +L   + D
Sbjct: 257 IEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNE-DSVVKIA-CSDNILCLATSD 313

Query: 683 GSVKLWSINQAILLLH 698
            + K  +     + L+
Sbjct: 314 DTFKTNAAIDQTIELN 329

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLS 809
                +S +K +   + L+  S D +L ++   +    V    L     + +        
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV---DLLQSLRYKHPLLCCNFI 65

Query: 810 VWDG-YVATGSETNEVFVYH 828
                 +  G+   E+    
Sbjct: 66  DNTDLQIYVGTVQGEILKVD 85

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 5e-10
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 14/107 (13%)

Query: 235 TNWYASPEELAGAPV-SCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ 290
           T  Y+ PE +        ++ ++ LG+LL+++ C   PF   EE       +R +V   Q
Sbjct: 172 TRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE------IIRGQVFFRQ 225

Query: 291 LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEERE 336
              +   E      W L   PS RP   E+    ++ +     E  E
Sbjct: 226 ---RVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAE 269

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 5e-10
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 232 LMETNWYASPEELAGA---PVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHR 285
           L  +  + +PE +      P S  SD+Y  G++L+EL     P+S    + + +  +   
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRG 225

Query: 286 VLPPQLLL---KFPKEA-SFCLWLLHPEPSGRPKMGELLQS 322
            L P L       PK         L  +   RP   ++L S
Sbjct: 226 YLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS 266

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRV-LPPQ 290
           T  +A+PE +   PV   +D++ +GVL + L     PF+  ++     +  R        
Sbjct: 191 TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDED 250

Query: 291 LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEER 335
                  EA  F   LL  EP  R  + + L+  +L     ++  R
Sbjct: 251 AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSR 296

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPP 289
                + +PE L     S  SD++  G+LL+E++               +  +       
Sbjct: 161 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMD 220

Query: 290 QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
                 P          H + + RP   +L +
Sbjct: 221 APDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE 252

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
           +LV      K+ D  ++    ++ +  +            + +PE ++    + ASD++ 
Sbjct: 141 ILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGG--KIPIRWTAPEAISYRKFTSASDVWS 198

Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP 314
            G++++E+                M ++      P  +          +     E + RP
Sbjct: 199 FGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRP 258

Query: 315 KMGELLQS-EFLNEPRDSME 333
           K  +++   + L    DS++
Sbjct: 259 KFADIVSILDKLIRAPDSLK 278

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 8/124 (6%)

Query: 235 TNWYASPEELAGA---PVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
           T ++ +PE +            D++ LG+   EL     P          +  +     P
Sbjct: 174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIAQNESP 232

Query: 289 PQLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDE 347
                 + +   +F    L   P  RP    LL+  F+   R      +     ++ + E
Sbjct: 233 ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQRTKDAVRE 292

Query: 348 EELL 351
            + L
Sbjct: 293 LDNL 296

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 11/140 (7%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
           +LV      KI D  +     + +       +        + +PE +     +  SD++ 
Sbjct: 140 ILVSDTLSCKIADFGLARLIEDNE----YTAREGAKFPIKWTAPEAINYGTFTIKSDVWS 195

Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEA-SFCLWLLHPEPSGR 313
            G+LL E+         G      + +L  R          P+E            P  R
Sbjct: 196 FGILLTEIVTHGRIPYPGMTNPEVIQNLE-RGYRMVRPDNCPEELYQLMRLCWKERPEDR 254

Query: 314 PKMGELLQSEFLNEPRDSME 333
           P    L     L +   + E
Sbjct: 255 PTFDYLRS--VLEDFFTATE 272

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 13/166 (7%), Positives = 39/166 (23%), Gaps = 14/166 (8%)

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTLL 676
                    +   ++  +    D        E+                           
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV-PRSMTS 242

Query: 677 ASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYY 736
            +G  D +      +   +       I  +++   +  V    +             +  
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302

Query: 737 YDLRNSKIPLCTLIGHNKTVSYVKF-VDATTLVSASTDNTLKLWDL 781
           YD++  K     +      ++ ++   D  T++    D  +  + L
Sbjct: 303 YDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.3 bits (126), Expect = 6e-08
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 6/125 (4%)

Query: 567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN 626
                             A   +          I  +  D    +   +S    S    +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV-PVH 284

Query: 627 SYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVK 686
               +    +  +GV+  +DV   +V       +  +  +  S AD   +    DDG + 
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLS-ADRKTVMVRKDDGKIY 339

Query: 687 LWSIN 691
            + + 
Sbjct: 340 TFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 24/264 (9%), Positives = 52/264 (19%), Gaps = 21/264 (7%)

Query: 572 CSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKS 631
             +  +    + A           E        R     + +         I +   +K 
Sbjct: 91  MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 150

Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
                     + V+D+   ++     E+         + +    L   S           
Sbjct: 151 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK--NLYYLSYRSLDPSPDRV 208

Query: 692 QAILLLHLGVSIGTIKTKAN-VCCVQF-----PLDSGRSLAFGSADHRIYYYDLRNSKIP 745
                  +      I          +        ++G                       
Sbjct: 209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 268

Query: 746 LCTLIGHNKTVSYVKF-VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN 804
           +  L       S       A     A     L  +D+               T   N   
Sbjct: 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----------RKVTEVKNNLT 318

Query: 805 FVGLSVWDG-YVATGSETNEVFVY 827
            + LS  D   V    +  +++ +
Sbjct: 319 DLRLSA-DRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 33/298 (11%), Positives = 59/298 (19%), Gaps = 57/298 (19%)

Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG-SVKLWS 689
             IA  +  G   + DVS + VL        R+  +            G+ +G  + ++ 
Sbjct: 16  DLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72

Query: 690 INQAILLLHLG--------------------------------------------VSIGT 705
                                                                    I  
Sbjct: 73  YRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132

Query: 706 IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDAT 765
                N   + +          G     I+ YD+   KI   T    +            
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS-K 191

Query: 766 TLVSASTDNTLKLWDLS-MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEV 824
            L   S  +     D   +  S  + +            N   L         G      
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE----- 246

Query: 825 FVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI 882
                     +   N +  D       + +    S     G+ +     A   G +  
Sbjct: 247 -YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV-PVHGEFAAYYQGAPEKGVLLK 302

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 17/121 (14%)

Query: 237 WYASPEELAG-----APVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
           ++ +PE +        P    +D++ LG+ L E+     P          +   +     
Sbjct: 175 YWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPT 234

Query: 289 PQLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQIDE 347
                ++      F    L      R    +LLQ  F+    +          +RE I E
Sbjct: 235 LAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDSNK--------PIRELIAE 286

Query: 348 E 348
            
Sbjct: 287 A 287

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 4/55 (7%), Positives = 23/55 (41%)

Query: 67  SLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHV 121
           ++   + + +R +   +   + +Q ++ +   H   I+  +++    + +    +
Sbjct: 95  AVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDI 149

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD 681
           S+ + +Y      S+  + ++  W       + + +     V S D S  D   + +GS 
Sbjct: 270 SLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSG 326

Query: 682 DGSVKLWSI 690
           D    ++ +
Sbjct: 327 DKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-09
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
           +  HE  V S+ F+        S   D  +  W           G SI   K  ++V   
Sbjct: 261 LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY-------GASIFQSKESSSVLSC 312

Query: 716 QFPLDSGRSLAFGSADHRIYYYDL 739
              +D  + +  GS D +   Y++
Sbjct: 313 DISVD-DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 8e-08
 Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 713 CCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF-VDATTLVSAS 771
             ++F    G+       D+ +  +               + +V      VD   +V+ S
Sbjct: 269 LSLKFAYC-GKWFVSTGKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISVDDKYIVTGS 325

Query: 772 TDNTLKLWDL 781
            D    ++++
Sbjct: 326 GDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 51/287 (17%), Positives = 84/287 (29%), Gaps = 25/287 (8%)

Query: 542 EGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAII 601
           +G  K    S    K+ ++Q D LN  N + S     DG      G    + +++     
Sbjct: 71  KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL---- 126

Query: 602 NENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHER 661
                    +    + S  +         S++  S             +Q L    +   
Sbjct: 127 ---AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183

Query: 662 RVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDS 721
              S    S D T L +G  D +V+ W + +   L             + +  + +    
Sbjct: 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-------FTSQIFSLGY---C 233

Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
                            L  +K     L  H   V  +KF       VS   DN L  W 
Sbjct: 234 PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVY 827
                   I       +  ++      +SV D Y+ TGS   +  VY
Sbjct: 294 TP--YGASIFQ-----SKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 658 EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQF 717
            H   V ++  S+     + +G   G VK+W I+       +   +  +     +   + 
Sbjct: 49  NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQ-LDCLNRDNYIRSCKL 105

Query: 718 PLDSGRSLAFGSADHRIYYY 737
            L  G +L  G     +  +
Sbjct: 106 -LPDGCTLIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 1/93 (1%)

Query: 750 IGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLS 809
           + H + V  V   + T  V       +K+WD+S   ++             N      L 
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP-VSQLDCLNRDNYIRSCKLL 106

Query: 810 VWDGYVATGSETNEVFVYHKAFPMPALSFNFNH 842
                +  G E + + ++  A P P +      
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 3e-09
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
           T  Y +PE L G   + + D +  GVLL+E+     PF  G+++     S+R     P  
Sbjct: 166 TPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFH-GQDEEELFHSIRMD--NPFY 222

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKM-GELLQSEFLNE-PRDSMEEREAAIELREQIDEE 348
                KEA    + L   EP  R  + G++ Q     E   + +E +E     R ++   
Sbjct: 223 PRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEELERKEIDPPFRPKVKSP 282

Query: 349 ELLLEF 354
                F
Sbjct: 283 FDCSNF 288

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
              + +PE       +  SD++  G+LL EL         G      +  +      P  
Sbjct: 177 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP-C 235

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEER 335
             + P+            EP  RP    L    FL +   S E +
Sbjct: 236 PPECPESLHDLMCQCWRKEPEERPTFEYLQA--FLEDYFTSTEPQ 278

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 4e-09
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 4/127 (3%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
            +++     K+ D  +    + +K+      +        + + E L     +  SD++ 
Sbjct: 161 CMLDEKFTVKVADFGL-ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWS 219

Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP 314
            GVLL+EL     P             L       Q            L   HP+   RP
Sbjct: 220 FGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRP 279

Query: 315 KMGELLQ 321
              EL+ 
Sbjct: 280 SFSELVS 286

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 4e-09
 Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 16/207 (7%)

Query: 589 NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVS 648
            K+++                 + E +S          S   S++A  + +  V + D  
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 649 RSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT 708
           +   +  +      + ++ F + + +L+A+G D     L++ + A   L  G  +   K 
Sbjct: 232 KKMAVATLASETLPLLAVTFIT-ESSLVAAGHDC-FPVLFTYDSAAGKLSFGGRLDVPKQ 289

Query: 709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-----D 763
            +                F + D +        +   L +   H  +VS +  +      
Sbjct: 290 SSQR-------GLTARERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAK 340

Query: 764 ATTLVSASTDNTLKLWDLSMCTSRVID 790
            +   +   D  + +WD+    S + D
Sbjct: 341 CSQFCTTGMDGGMSIWDVRSLESALKD 367

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 33/315 (10%), Positives = 88/315 (27%), Gaps = 57/315 (18%)

Query: 571 VCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIK 630
           +   ++++D    A    N ++ ++E                                  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYE---------------------------------- 35

Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
                            ++   + E++EH  +V  +D++  D   + +   D +  +W++
Sbjct: 36  --------------KSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTL 80

Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
                       +     +A  C    P +   ++  GS    I Y++  N       + 
Sbjct: 81  KGRT---WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 137

Query: 751 GHNKT--VSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGL 808
              ++  +S     ++  L + S D   +++   +        P    +     +     
Sbjct: 138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197

Query: 809 SVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSS 868
           S   G+V     +              +                 A++ +  +     + 
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM---AVATLASETLPLLAVTFITE 254

Query: 869 NTLVAANSSGNIKIL 883
           ++LVAA       + 
Sbjct: 255 SSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 24/322 (7%), Positives = 68/322 (21%), Gaps = 78/322 (24%)

Query: 568 SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAI--------------------------- 600
           +  V  + +  D       G ++   V+                                
Sbjct: 51  NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110

Query: 601 -------------INENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDV 647
                          +  D                          +A+ + +   +++  
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 648 SRSQVLTEMREHERRVWSIDF-----------------SSADPTLLASGSDDGSVKLWSI 690
              +V                                  SA+ + +A  S D +V L   
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADH-RIYYYDLRNSKIPLCTL 749
           ++ + +         + ++         +     +A G      ++ YD    K    + 
Sbjct: 231 DKKMAVAT-------LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGK---LSF 280

Query: 750 IGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLS 809
            G       +     ++    +     +  D    +           + H N  + + + 
Sbjct: 281 GGR------LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 334

Query: 810 VWDGY----VATGSETNEVFVY 827
                      T      + ++
Sbjct: 335 SGGKAKCSQFCTTGMDGGMSIW 356

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 4e-09
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQ 290
              + +PE +     S  SD++  GVL++E F     P+     K   ++++  +     
Sbjct: 173 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR--GMKGSEVTAMLEKGERMG 230

Query: 291 LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
                P+E           +   RP    +  
Sbjct: 231 CPAGCPREMYDLMNLCWTYDVENRPGFAAVEL 262

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
            LV      K+ D  ++   ++++        +       ++ PE L  +  S  SDI+ 
Sbjct: 131 CLVNDQGVVKVSDFGLSRYVLDDEY----TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWA 186

Query: 258 LGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGR 313
            GVL++E++     P+      + T   +   +   +  L   K  +      H +   R
Sbjct: 187 FGVLMWEIYSLGKMPYE-RFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADER 245

Query: 314 PKMGELLQ 321
           P    LL 
Sbjct: 246 PTFKILLS 253

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 55.5 bits (133), Expect = 7e-09
 Identities = 16/136 (11%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
           +L++     K+ D   + +    +K          +                    D++ 
Sbjct: 141 ILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWS 200

Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEA-SFCLWLLHPEPS 311
            GV+++ L     PF    ++   +  +              +           L  +P 
Sbjct: 201 TGVIMYTLLAGSPPF-WHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQ 259

Query: 312 GRPKMGELLQSEFLNE 327
            R    E L   F  +
Sbjct: 260 KRYTAEEALAHPFFQQ 275

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 7e-09
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 16/151 (10%)

Query: 180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYA 239
           D+   + +      G  V +++     K  D R +       +     +   L  T  YA
Sbjct: 128 DVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH-------QHIPYRENKNLTGTARYA 180

Query: 240 SPEELAGAPVSCASDIYRLGVLLFELFC--------PFSTGEEKTRTMSSLRHRVLPPQL 291
           S     G   S   D+  LG +L               +T  +K   +S  +       L
Sbjct: 181 SINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVL 240

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
              +P E  ++  +        +P    L Q
Sbjct: 241 CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ 271

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (133), Expect = 9e-09
 Identities = 21/142 (14%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
           +LV      K+ D  ++    ++   P     +       + +PE +     + ASD++ 
Sbjct: 159 ILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWS 218

Query: 258 LGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGR 313
            G++++E+      P+         ++++      P  +          L     + + R
Sbjct: 219 YGIVMWEVMSYGERPYW-DMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHR 277

Query: 314 PKMGELLQS--EFLNEPRDSME 333
           PK G+++ +  + +  P +S++
Sbjct: 278 PKFGQIVNTLDKMIRNP-NSLK 298

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQ 290
              + +PE L     S ASD +  GV L+E+F     P+  G   ++ +  +        
Sbjct: 177 PFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI-GLNGSQILHKIDKEGERLP 235

Query: 291 LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNE 327
                P++  +  +     +P  RP    L   +FL E
Sbjct: 236 RPEDCPQDIYNVMVQCWAHKPEDRPTFVALR--DFLLE 271

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 1e-08
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 604 NRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDV-SRSQVLTEMREHERR 662
                Y        + LS+I       + + S + E    ++++ S   V   + +   +
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQ 326

Query: 663 VWSIDFSSADPTLLASGSDDGSVKLWSIN 691
           +WS++F     TL+A+   DG   L  ++
Sbjct: 327 IWSVNFK--GKTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 4e-08
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 712 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 771
                F +    ++    ++++   Y+LR+ K+    ++     +  V F   T + +  
Sbjct: 285 SAITTFYVSD--NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE 342

Query: 772 TDNTLKLWDLS 782
            D    L  L 
Sbjct: 343 KDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 8/160 (5%)

Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTL 767
             + + C+QF       +  G+ D  I  YD  N K  L  L GH+  V  +K+     L
Sbjct: 12  MTSVITCLQF---EDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGGIL 67

Query: 768 VSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVY 827
           VS STD             +   T +      T     +       Y+ TGS  N + V+
Sbjct: 68  VSGSTDR----TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 828 HKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQS 867
                         H  PL     ++   F+  +     S
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 6e-07
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 748 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG 807
           TL GH  +V      +   +++ + D  ++++D            L   +GH      + 
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK------KFLLQLSGHDGGVWALK 60

Query: 808 LSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNH 842
            +   G + +GS    V V+          F  ++
Sbjct: 61  YA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 20/128 (15%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTL 675
             S ++ + +     + + +   + +++V+D    + L ++  H+  VW++ ++     +
Sbjct: 12  MTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGI 66

Query: 676 LASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIY 735
           L SGS D +V++W I +          +         C       + + +  GS D+ ++
Sbjct: 67  LVSGSTDRTVRVWDIKK-----GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 736 YYDLRNSK 743
            + L    
Sbjct: 122 VWKLPKES 129

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 32/324 (9%), Positives = 75/324 (23%), Gaps = 68/324 (20%)

Query: 558 DLNQGDLLNS----SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVE 613
           D      L         V +L +   G L + +                   + H   V 
Sbjct: 39  DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98

Query: 614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRV---------- 663
                              I + + +  + VW + +   + +  E               
Sbjct: 99  C-------LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 151

Query: 664 ----------WSIDFSSADPTLLASGSDDGSVKLWSINQA-------------------- 693
                      S+   S    ++ SGS D ++ +W + Q                     
Sbjct: 152 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 211

Query: 694 -----------ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNS 742
                        +    +  G +            L         SA           +
Sbjct: 212 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271

Query: 743 KIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
                    H    +   F  +  ++ + ++N   +++L   + +++     +     + 
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR--SGKLVHA---NILKDADQ 326

Query: 803 KNFVGLSVWDGYVATGSETNEVFV 826
              V        VA   +  + F+
Sbjct: 327 IWSVNFKG-KTLVAAVEKDGQSFL 349

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 6/92 (6%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQ 290
              + +PE L     +  SD++  G+LL+E+F     P+  G         L        
Sbjct: 229 PVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP-GIPVDANFYKLIQNGFKMD 287

Query: 291 LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
                 +E           +   RP    L  
Sbjct: 288 QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTS 319

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 3e-08
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
           +LV      KI D  ++      + Q   +K+ +      + + E L  +  +  SD++ 
Sbjct: 158 ILVGENYVAKIADFGLS------RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS 211

Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP 314
            GVLL+E+         G         L       + L    +           +P  RP
Sbjct: 212 YGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERP 271

Query: 315 KMGELLQ--SEFLNEPRDSM 332
              ++L   +  L E +  +
Sbjct: 272 SFAQILVSLNRMLEERKTYV 291

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.9 bits (126), Expect = 6e-08
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 219 EEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--------PFS 270
             K+     ++  L  T  Y S     G   S   D+  LG +                +
Sbjct: 160 VTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA 219

Query: 271 TGEEKTRTMSSLRHRVLPPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQ 321
           T ++K   +   +      +L   FP+E   +  +  +      P    L  
Sbjct: 220 TNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG 271

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLL 293
            Y SPE L       +SD++ LG ++++L     PF  G E       ++     P+   
Sbjct: 175 QYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPE--- 231

Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFL 325
           KF  +A      LL  + + R    E+     L
Sbjct: 232 KFFPKARDLVEKLLVLDATKRLGCEEMEGYGPL 264

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 9e-08
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPP 289
                + +PE L     +  SD++  GVLL+E+F        G         L+      
Sbjct: 198 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMD 257

Query: 290 QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
           +      +         H  PS RP   +L++
Sbjct: 258 KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 289

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
              +  PE +     +  SD++  GV+L+E+F        G      +  +R   +    
Sbjct: 205 PIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILA-C 263

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
               P E  +         P+ RP    + +
Sbjct: 264 PENCPLELYNLMRLCWSKLPADRPSFCSIHR 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 1e-07
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 726 AFGSADHRIYYYDLRNSKIPLCTLI--GHNKTVSYVKFVDATTLVSASTDNTLKLWDLS 782
           A GS D+ +  +++         +       +V+ V +++ TT+VSA  D+ +K W++ 
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 7e-07
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSR--SQVLTEMREHERRVWSIDFSSADPTLLASGSD 681
              S    ++A+ + +  V VW++++     +     H     +      + T + S   
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQ 288

Query: 682 DGSVKLWSI 690
           D ++K W++
Sbjct: 289 DSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 4e-06
 Identities = 12/137 (8%), Positives = 34/137 (24%), Gaps = 10/137 (7%)

Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKT-- 708
            +      H + + ++  S+ D   L S   +G +  W I+        G+S        
Sbjct: 3   SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIST-------GISNRVFPDVH 54

Query: 709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
              +  ++                ++                  +     +       + 
Sbjct: 55  ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 114

Query: 769 SASTDNTLKLWDLSMCT 785
            A+    + ++     T
Sbjct: 115 VAACYKHIAIYSHGKLT 131

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 1/97 (1%)

Query: 709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLV 768
              +  +    D G++L    A+  I  +D+            H   ++ +K      L 
Sbjct: 12  NKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 805
           + S D+ LK+               +  +        
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
              + +PE +     + ASD++  GV ++E+         G +    +  + +    P +
Sbjct: 172 PIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP-M 230

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQ--SEFLNEPR 329
               P    S        +PS RP+  EL    S  L E +
Sbjct: 231 PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEK 271

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 15/131 (11%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
              + + E +     +  SD++  GV ++EL         G   +   S L      PQ 
Sbjct: 176 PIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQP 235

Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQ--SEFLNEP----------RDSMEEREAAI 339
            +         +     +   RPK  EL+   S+   +P          R  +     + 
Sbjct: 236 PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLPSPTDSN 295

Query: 340 ELREQIDEEEL 350
             R  +DEE++
Sbjct: 296 FYRALMDEEDM 306

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 45/138 (32%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKT--------------- 276
           T  Y SPE L G   S  SDI+ +G+ L E+     P    + K                
Sbjct: 166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

Query: 277 --------------------------RTMSSLRHRVLPPQLLLKFPKEA-SFCLWLLHPE 309
                                       +  + +   P      F  E   F    L   
Sbjct: 226 TPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN 285

Query: 310 PSGRPKMGELLQSEFLNE 327
           P+ R  + +L+   F+  
Sbjct: 286 PAERADLKQLMVHAFIKR 303

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLL 293
            + +PE LA    S  SD++  GVLL+E+         G + ++    L       +   
Sbjct: 181 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEG 240

Query: 294 KFPKEASFCLWLLHPEPSGRPKMGELLQ 321
              K            PS RP   E+ Q
Sbjct: 241 CPEKVYELMRACWQWNPSDRPSFAEIHQ 268

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 5e-07
 Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 28/121 (23%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEE----------------- 274
           T WY +PE L  +  +   D++ +G +  E+F     F    +                 
Sbjct: 178 TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE 237

Query: 275 ---KTRTMSSLRHRVLPPQLLLKFPKEAS-----FCLWLLHPEPSGRPKMGELLQSEFLN 326
              +   +          Q + KF  +         L  L   P+ R      L   +  
Sbjct: 238 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQ 297

Query: 327 E 327
           +
Sbjct: 298 D 298

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 24/206 (11%), Positives = 53/206 (25%), Gaps = 22/206 (10%)

Query: 639 EGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLH 698
            G + + D S  ++ T +      V     S A    L     DG V +  +        
Sbjct: 41  AGQIALIDGSTYEIKTVLDTGYA-VHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTV 98

Query: 699 LGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSY 758
             + IG+ + ++         +   ++A      +    D    + P         T   
Sbjct: 99  AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDE 156

Query: 759 VKFV-------------DATTLVSASTDNTLKLWDLSMCTSRVIDT-----PLHSFTGHT 800
            ++                  +V+      + L D +   +           LH      
Sbjct: 157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216

Query: 801 NVKNFVGLSVWDGYVATGSETNEVFV 826
           + + F+  +     +          V
Sbjct: 217 SHRYFITAANARNKLVVIDTKEGKLV 242

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 7e-07
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
           ++IAS++ +  +++W+V+  +V   +    R              L S S +G +   
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 711 NVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLV 768
                      G  +A  SAD  I  +++   K+   T+    +       +      LV
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALV 297

Query: 769 SASTDNTLKLWDL 781
           S S +  +   + 
Sbjct: 298 SISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 11/262 (4%)

Query: 568 SNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNS 627
           S+          G   A+  V+  +++++      +   I    + + S         + 
Sbjct: 58  SHQTTVAKTSPSGYYCASGDVHGNVRIWDT----TQTTHILKTTIPVFSGPVKDISWDSE 113

Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
             +        E    V+          +    R + S+DF  + P  + SGSDD +V +
Sbjct: 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173

Query: 688 WSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
           +           G     + +            +G        +              L 
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233

Query: 748 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG 807
            +             D T + SAS D T+K+W+++            +    T +++   
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL------KVEKTIPVGTRIEDQQL 287

Query: 808 LSVWDG-YVATGSETNEVFVYH 828
             +W    + + S    +   +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
                         S D T +AS S D ++K+W++    +   + V       +     +
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR---IEDQQLGI 289

Query: 716 QFPLDSGRSLAFGSADHRIYYYDL 739
            +   + ++L   SA+  I + + 
Sbjct: 290 IW---TKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
            +I   N   V     V          EH  +      S       ASG   G+V++W  
Sbjct: 30  DKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDT 87

Query: 691 NQ 692
            Q
Sbjct: 88  TQ 89

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQ 290
              + +PE +     S  SD++  GV ++E       P+   + K   + +   +    +
Sbjct: 175 PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYK--KMKGPEVMAFIEQGKRME 232

Query: 291 LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEERE 336
              + P E  +        +   RP    + Q   +     S+  + 
Sbjct: 233 CPPECPPELYALMSDCWIYKWEDRPDFLTVEQR--MRACYYSLASKV 277

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 8/88 (9%), Positives = 27/88 (30%)

Query: 67  SLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIES 126
            L ++L   +  + V     +  Q+   +     +  V  ++     ++ + ++    + 
Sbjct: 94  PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDF 153

Query: 127 ASCSDSGSDSHEEGLNTQNMETKDLSSP 154
                 G+D       +         +P
Sbjct: 154 GLSKALGADDSYYTARSAGKWPLKWYAP 181

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 32/130 (24%)

Query: 233 METNWYASPEELAGAPV-SCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
           + T WY  P+ L GA + S + D++  G +  EL     P   G +    +  +   +  
Sbjct: 162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGT 221

Query: 289 P---------------------------QLLLKFPKEA-SFCLWLLHPEPSGRPKMGELL 320
           P                            ++ K           LL   P  R    E L
Sbjct: 222 PTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281

Query: 321 QSEFLNEPRD 330
           Q  + ++   
Sbjct: 282 QHPYFSDFCP 291

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 30/126 (23%)

Query: 235 TNWYASPEELAGA-PVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSL--------- 282
           T WY +PE L GA       D++ +G +L EL    PF  G+     ++ +         
Sbjct: 163 TRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTE 222

Query: 283 -------------RHRVLPPQLLLKFPKEAS-----FCLWLLHPEPSGRPKMGELLQSEF 324
                          +  P   L      A          L    P  R    + L+ ++
Sbjct: 223 EQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKY 282

Query: 325 LNEPRD 330
            +    
Sbjct: 283 FSNRPG 288

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLL 293
            Y +PE ++  P + + D +  G+L++E+     PF       +T   + +     +   
Sbjct: 166 DYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFY-DSNTMKTYEKILNA--ELRFPP 222

Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
            F ++       L+  + S R    +    +  N P
Sbjct: 223 FFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHP 258

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 34/150 (22%)

Query: 237 WYASPEELAG-APVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPP--- 289
           WY +PE +      +   DI+ +G ++ E+      F   +   +    ++    PP   
Sbjct: 183 WYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEF 242

Query: 290 -------------------------QLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSE 323
                                     +L      A +    +L  +   R   GE L   
Sbjct: 243 VQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHP 302

Query: 324 FLNEPRDSMEEREAAIELREQIDEEELLLE 353
           +     D+ +E +   +  +  D+ +  L+
Sbjct: 303 YFESLHDTEDEPQVQ-KYDDSFDDVDRTLD 331

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
              + +PE +     +  SD++  G+ L+ELF        G         +         
Sbjct: 210 PVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLS 269

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
               P E           +P  RP   +++Q
Sbjct: 270 PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 300

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
              + SPE L     +  SD++  GV+L+E+         G    + +  +    L  + 
Sbjct: 198 PVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKP 257

Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQS 322
                             P  RP   E++ S
Sbjct: 258 DNCPDMLFELMRMCWQYNPKMRPSFLEIISS 288

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
           T  Y +PE L       A D + LGV+++E+ C   PF   + +      L   +  P+ 
Sbjct: 168 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR- 226

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
                 EA S    LL  +P  R   G     E +   
Sbjct: 227 --TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHR 262

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.0 bits (110), Expect = 6e-06
 Identities = 18/185 (9%), Positives = 44/185 (23%), Gaps = 21/185 (11%)

Query: 608 HYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID 667
               +++ +     ++   ++ +   ++ +                         +++I 
Sbjct: 164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS---------MLYTIA 214

Query: 668 FSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAF 727
               D    A+           +         G +                         
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKT-------GKTHTQEFADLTELYFTGLRSPKDPNQI 267

Query: 728 GSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTS 786
               +R+  YDL+  K  L      + T   V F      L    T N L +++    T 
Sbjct: 268 YGVLNRLAKYDLKQRK--LIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD--TL 323

Query: 787 RVIDT 791
             +  
Sbjct: 324 EKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 12/120 (10%), Positives = 27/120 (22%), Gaps = 2/120 (1%)

Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTL-VSASTDNTLK 777
                +   +  + ++  D+ +  +    ++             D  T  V  +    + 
Sbjct: 6   AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65

Query: 778 LWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALS 837
             DL  C +                     +S     V       +    H     P L 
Sbjct: 66  GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 18/238 (7%), Positives = 49/238 (20%), Gaps = 27/238 (11%)

Query: 670 SADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS 729
            A    +   +   ++ +  +    +          +  K          D+  +    +
Sbjct: 5   KAGHEYMIVTNYPNNLHVVDVASDTVYKSC-----VMPDKFGPGTAMMAPDNRTAYVLNN 59

Query: 730 ADHRIYYYDLRNSKIPLC-----TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMC 784
               IY  DL   K               +++           V A+ + T +L D  + 
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 785 TSRVID-------TPLHSFTGHTNVKNFVGLSV-WDGYVATGSETNEVFVYHKAFPMPAL 836
               ++                   +    +    DG +                   AL
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 837 ---------SFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 885
                        +                + ++            A+       +++
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 25/305 (8%), Positives = 70/305 (22%), Gaps = 54/305 (17%)

Query: 574 LSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQI 633
            +     E          + V +    +  +         M  +    +       ++  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVD----VASDTVYK--SCVMPDKFGPGTAMMAPDNRTAY 55

Query: 634 ASSNFEGVVQVWDVSRSQVL------TEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
             +N  G +   D+   +        +   E  R ++S   S     + A+ +    +  
Sbjct: 56  VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115

Query: 688 WSINQAILLL-------HLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR 740
             + +   L             + T      V  ++   D G     G   +++     +
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLYVAGPDIYKMDVKTGK 174

Query: 741 ------------------NSKIPLCTLIGHNKTVSYVKFV----DATTLVSASTDNTLKL 778
                             +           ++            D     +A        
Sbjct: 175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234

Query: 779 WDLSMCTSRVIDTPLHSFTGHTNVKNFVG----------LSVWDGYVATGSETNEVFVYH 828
            DL    +   +    +    T +++             L+ +D  +          + H
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD--LKQRKLIKAANLDH 292

Query: 829 KAFPM 833
             + +
Sbjct: 293 TYYCV 297

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (109), Expect = 9e-06
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLL 293
           + A      G     ++D + LG +LF+L     PF   + K +         +  +L  
Sbjct: 171 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD 230

Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
            F  E  S    LL  + + R         E    P
Sbjct: 231 SFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESP 266

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 31/125 (24%)

Query: 237 WYASPEELAGAP-VSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLL 292
           WY +PE L G    S A DI+ LG +  E+      F    E  +     R    P +++
Sbjct: 167 WYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVV 226

Query: 293 LK-----------FPKEA----------------SFCLWLLHPEPSGRPKMGELLQSEFL 325
                        FPK A                S    +LH +P+ R      L   F 
Sbjct: 227 WPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFF 286

Query: 326 NEPRD 330
            +   
Sbjct: 287 QDVTK 291

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRV---LPPQL 291
              + +PE +     +  SD++  GVLL+E+F   ++     +       R+      + 
Sbjct: 199 PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRA 258

Query: 292 LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
                 E     L   H EPS RP   EL++
Sbjct: 259 PDYTTPEMYQTMLDCWHGEPSQRPTFSELVE 289

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 7/176 (3%)

Query: 640 GVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL 699
           G + + D    +++  +      V     S A    L     D  + +  +         
Sbjct: 42  GQIALVDGDSKKIVKVIDTGYA-VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVA 99

Query: 700 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYV 759
              I       +V   +F     R    G+     +      +  P   +     TV   
Sbjct: 100 --EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 157

Query: 760 KFV--DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG 813
            +        + AS ++   + ++   T +V+          T         + DG
Sbjct: 158 TYHPEPRVAAIIASHEHPEFIVNVKE-TGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 8e-05
 Identities = 33/219 (15%), Positives = 58/219 (26%), Gaps = 25/219 (11%)

Query: 660 ERRVWSIDFSSADPTLLA-SGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFP 718
           E R          P L + +  D G + L   +           +  I T   V   +  
Sbjct: 18  EDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDS-------KKIVKVIDTGYAVHISRMS 70

Query: 719 LDSGRSLAFGSADHRIYYYDLRNSK----IPLCTLIGHNKTVSYVKFV--DATTLVSAST 772
              GR L     D RI   DL   +      +   I      S       D  T+  A  
Sbjct: 71  AS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129

Query: 773 DNTLKLWDLSM--------CTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEV 824
                + D                +DT   ++     V   +       ++    ET +V
Sbjct: 130 PPQFAIMDGETLEPKQIVSTRGMTVDTQ--TYHPEPRVAAIIASHEHPEFIVNVKETGKV 187

Query: 825 FVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCW 863
            + +          +   A  L+    D + ++  +   
Sbjct: 188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN 226

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 32/207 (15%), Positives = 65/207 (31%), Gaps = 38/207 (18%)

Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-GAPVSCASDIY 256
           +L+    + KI D  +      +      + + +     WY +PE +      + + DI+
Sbjct: 140 LLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATR--WYRAPEIMLNSKGYTKSIDIW 197

Query: 257 RLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ----------------------- 290
            +G +L E+      F       +    L     P Q                       
Sbjct: 198 SVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNK 257

Query: 291 -----LLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELREQ 344
                L      +A      +L   P  R ++ + L   +L +  D  +E  A    +  
Sbjct: 258 VPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFD 317

Query: 345 IDEEELLLEFLLLVQQRKQESAKKLQD 371
           ++ ++L  E L   ++   E   + Q 
Sbjct: 318 MELDDLPKEKL---KELIFEETARFQP 341

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 237 WYASPEELAGAP--VSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVL--PP 289
            Y +P+ + G       A D + LGVL++EL     PF T + +  + + +  R+L   P
Sbjct: 195 EYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPF-TVDGEKNSQAEISRRILKSEP 253

Query: 290 QLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
               +    A      LL  +P  R   G     E     
Sbjct: 254 PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 293

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 46/162 (28%)

Query: 233 METNWYASPEELAGA-PVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
           + T WY +PE +      +   DI+ +G ++ EL      F   +   +    LR    P
Sbjct: 179 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 238

Query: 289 PQLLLKF-----------------------------PKEASFCLWLLHPEPSGRPKMGEL 319
              LLK                              P        +L  +   R    + 
Sbjct: 239 GAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 298

Query: 320 LQSEFLNEPRD------------SMEEREAAI-ELREQIDEE 348
           L   +  +  D            S E R+  I E +    +E
Sbjct: 299 LAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDE 340

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 21/204 (10%), Positives = 44/204 (21%), Gaps = 17/204 (8%)

Query: 634 ASSNFEGVVQVW--DVSRSQVLTEMREHE--RRVWS-----IDFSSADPTLLASGSDDGS 684
             + F G  + W         L           V          +S      A G     
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDY 97

Query: 685 VKLWSINQAILLLHLGVSIGTIK---TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRN 741
           V+++  +    L    + +           V  +     S   L F           +  
Sbjct: 98  VEVF--DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155

Query: 742 SKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
           +       +  + +  ++    A T    S   +L   DL+   +               
Sbjct: 156 ASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212

Query: 802 VKNFVGLSVWDGYVATGSETNEVF 825
                  +     V   + +    
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQG 236

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 49/249 (19%)

Query: 114 VMSSFNH---VSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRRED 170
                 H   + FI +   +       +  L +   E   L      D L R T      
Sbjct: 50  QTVMLRHENILGFIAA--DNKDNGTWTQLWLVSDYHEHGSL-----FDYLNRYTVTVEGM 102

Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVV---------LVEGMQEHKILDNRVNVEQVEEK 221
           ++L  +  + L+        +     +          LV+      I D  + V + +  
Sbjct: 103 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV-RHDSA 161

Query: 222 KQPFPMKQILLMETNWYASPEELAGA------PVSCASDIYRLGVLLFELF--------- 266
                +     + T  Y +PE L  +           +DIY +G++ +E+          
Sbjct: 162 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH 221

Query: 267 ----CPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFC----------LWLLHPEPSG 312
                P+        ++  +R  V   +L    P     C              +   + 
Sbjct: 222 EDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAA 281

Query: 313 RPKMGELLQ 321
           R     + +
Sbjct: 282 RLTALRIKK 290

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 30/128 (23%)

Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFST-----------------G 272
               + A          + + D++  G +L EL      F                    
Sbjct: 184 CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPT 243

Query: 273 EEKTRTMSSLRHRVLPPQL---------LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQS 322
            E+ R M+        PQ+           + P EA + C  LL   P+ R    E    
Sbjct: 244 REQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 303

Query: 323 EFLNEPRD 330
            F +E RD
Sbjct: 304 SFFDELRD 311

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 9e-05
 Identities = 43/311 (13%), Positives = 93/311 (29%), Gaps = 49/311 (15%)

Query: 44  LSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGI 103
           L  V   +  ++ F       ++         +  +D     ++  Q++  +   HS GI
Sbjct: 81  LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGI 140

Query: 104 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRR 163
           +  +++PS  V+ S   +  +           +    + T  + T+   +P         
Sbjct: 141 IHRDLKPSNIVVKSDCTLKIL----DFGLARTAGTSFMMTPYVVTRYYRAP--------- 187

Query: 164 TRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQ 223
                  L +      D+    C+           L  G       +    V +      
Sbjct: 188 ----EVILGMGYKENVDIWSVGCIMGEMVRHKI--LFPGRDYIDQWNK---VIEQLGTPC 238

Query: 224 PFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLR 283
           P  MK++     N+  +  + AG                           +      S  
Sbjct: 239 PEFMKKLQPTVRNYVENRPKYAGLTFP-------------------KLFPDSLFPADSEH 279

Query: 284 HRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEEREAAIELRE 343
           +++   Q              +L  +P+ R  + + LQ  ++N   D  E      ++ +
Sbjct: 280 NKLKASQAR-------DLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIYD 332

Query: 344 -QIDEEELLLE 353
            Q+DE E  +E
Sbjct: 333 KQLDEREHTIE 343

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 31/122 (25%)

Query: 237 WYASPEELAGA-PVSCASDIYRLGVLLFELFC---PFSTGEE------------------ 274
           WY +P+ L G+   S   DI+ +G +  E+      F    E                  
Sbjct: 165 WYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKN 224

Query: 275 --------KTRTMSSLRHRVLPPQLLLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFL 325
                   K     ++   +     L    +        +L  +P+ R    + L+  + 
Sbjct: 225 WPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYF 284

Query: 326 NE 327
            E
Sbjct: 285 KE 286

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 18/189 (9%), Positives = 43/189 (22%), Gaps = 28/189 (14%)

Query: 621 SSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGS 680
           +             +   EG  ++             E E  +    +S      L   +
Sbjct: 160 TFFMHCRDGSLAKVAFGTEGTPEITHTE-----VFHPEDEFLINHPAYSQ-KAGRLVWPT 213

Query: 681 DDGSVKLWSINQA---ILLLHLGVSIGTIKTKANVCCVQ------------FPLDSGRSL 725
             G +    ++      L     ++             Q              +D     
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273

Query: 726 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTL--VSASTDNTLKLWDLS 782
              +A   +   D +  +            +  +    D   L    ++ D TL + D  
Sbjct: 274 RHKTASRFVVVLDAKTGE--RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

Query: 783 MCTSRVIDT 791
             +   + +
Sbjct: 332 --SGEELRS 338

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 16/183 (8%)

Query: 633 IASSNFEGVVQVWDVSRSQVLTEMR--EHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
           IAS   + +  VW+++    LT  +  +   +V  +  S     L      +  V  + I
Sbjct: 8   IASPESQQI-HVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
                 L             ++  +            G       Y     S   L   +
Sbjct: 67  APDDGALTFAAESALP---GSLTHISTDHQ-------GQFVFVGSYNAGNVSVTRLEDGL 116

Query: 751 GHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSV 810
                          +   +  + TL +  L      +      S  GH   ++   ++ 
Sbjct: 117 PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT---VSDDGHLVAQDPAEVTT 173

Query: 811 WDG 813
            +G
Sbjct: 174 VEG 176

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 5/110 (4%)

Query: 608 HYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID 667
           ++     A+   ++    + Y   + AS        V +          +  E +    +
Sbjct: 225 NFSDTRWAADIHITPDGRHLYACDRTASLITV--FSVSEDGSVLSKEGFQPTETQPRGFN 282

Query: 668 FSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQF 717
              +   L+A+G     + ++ I     LL      G          V  
Sbjct: 283 VDHSGKYLIAAGQKSHHISVYEIVGEQGLL---HEKGRYAVGQGPMWVVV 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 16/196 (8%), Positives = 41/196 (20%), Gaps = 14/196 (7%)

Query: 608 HYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID 667
               +    R           +       ++E          +                 
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204

Query: 668 FSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAF 727
               D       +    +    +         G          +V      ++  ++ AF
Sbjct: 205 ARK-DIDPADPTAYRTGLLTMDL-------ETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256

Query: 728 GSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF-VDATTLVSASTDNTLKLWDLSMCTS 786
           G+  + +  +DL  +       +    +   V    D +T+        L  +D    T 
Sbjct: 257 GA-YNVLESFDLEKNA--SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE--TL 311

Query: 787 RVIDTPLHSFTGHTNV 802
                         ++
Sbjct: 312 EKKGQVDLPGNASMSL 327

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 12/108 (11%), Positives = 26/108 (24%), Gaps = 6/108 (5%)

Query: 725 LAFGSADHRIYYYDLRNSK-IPLCTLIGHNKTVSYVKFV-DATTL-VSASTDNTLKLWDL 781
           +   +   ++   D        + T+     T               + +   +L   DL
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 782 SMCTSRVIDT-PLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH 828
              T   +    L +            LS     +A       + + H
Sbjct: 64  V--TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLL 293
              +PE +     + A D + LGVL++E+     PF   +        +  +V  P    
Sbjct: 203 EALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS--- 259

Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
            F  +       LL  + + R    +   ++  N  
Sbjct: 260 HFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHK 295

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
           +++    + V DV+ ++V   +            S     +  + +    V +    
Sbjct: 7   ANSESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 6/78 (7%), Positives = 20/78 (25%)

Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
                 K+ + + +          + +  +T           I  +     +  + S   
Sbjct: 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCN 266

Query: 684 SVKLWSINQAILLLHLGV 701
           +V +       +   + V
Sbjct: 267 TVSVIDTATNTITATMAV 284

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 31/161 (19%), Positives = 46/161 (28%), Gaps = 51/161 (31%)

Query: 225 FPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSS 281
           +       ++T  Y SPE L GAP  C +DI+    L+FEL      F   +E       
Sbjct: 182 YDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFE-PDEGHSYTKD 240

Query: 282 LRHRVLPPQLLLKFPKE------------------------------------------- 298
             H     +LL + P                                             
Sbjct: 241 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDE 300

Query: 299 ----ASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSMEER 335
               + F   +L  +P  R   G L+   +L +     E R
Sbjct: 301 AKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIR 341

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	886
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.15
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.96
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.91
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.78
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.71
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.47
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.09
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.53
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.45
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.32
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.29
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.07
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.6
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	95.55
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.05
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.55
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.46
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.23
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	91.66
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	91.07
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	90.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.78
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.22
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.24
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.09
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	83.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	80.17

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=294.04  Aligned_cols=285  Identities=12%  Similarity=0.231  Sum_probs=243.8

Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf             58999889999968999899996899199997586447566533334872378980169980799986999628991999
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQV  644 (886)
Q Consensus       565 ~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~i  644 (886)
                      .+|.+.|++++|+|+|++||||+ ||.|+|||+........  ........|.+.|.+++|+| ++++|++++.||.|++
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~--~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP--VSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC--SEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCE--EEEEEECCCCCCEEEEEECC-CCCEEEEEECCCCCCC
T ss_conf             79999289999989999999997-99889977367763311--68764048899689999867-9988988612332111


Q ss_pred             EECCCC--EEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEE-CCCCEEEEEEECCC
Q ss_conf             987886--278881235874999998139999899981899499994750344420473034453-27986999981899
Q 002736          645 WDVSRS--QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDS  721 (886)
Q Consensus       645 Wd~~~~--~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~  721 (886)
                      ||+...  +....+..|...+.++.|+| ++..+++++.|+.|++|++.+       ........ +...+.+++|+++ 
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~-------~~~~~~~~~~~~~v~~l~~s~~-  194 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN-------QTLVRQFQGHTDGASCIDISND-  194 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECTT-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             1111111111111111111111111111-111111111111111111111-------1111111111111110123444-


Q ss_pred             CCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf             96899993899099996589983469991279986799964-99989999789949999479997665698813860678
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT  800 (886)
Q Consensus       722 ~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~  800 (886)
                      +..+++|+.|+.+++||+++.+. +..+ .|...|.+++|+ ++..+++++.|+.+++||++...       ......|.
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~-~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~  265 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHLHE  265 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECCCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEE-ECCC-CCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCC-------CCCCCCCC
T ss_conf             32112235665532111111000-0024-666615799971530300000025642111111111-------00001245


Q ss_pred             CCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCE
Q ss_conf             85349999139999999849992999713999861010357999999885566799599999906999599998479979
Q 002736          801 NVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNI  880 (886)
Q Consensus       801 ~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I  880 (886)
                      ..|++++|+|++++|++|+.|+.|++|+...++++....              |...|.+++|+|++. +|++|+.||+|
T Consensus       266 ~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~s~d~~-~l~t~s~D~~I  330 (337)
T d1gxra_         266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------------ESSSVLSCDISVDDK-YIVTGSGDKKA  330 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------------CSSCEEEEEECTTSC-EEEEEETTSCE
T ss_pred             CCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC--------------CCCCEEEEEEECCCC-EEEEEECCCEE
T ss_conf             654169998999999999489969999899997999926--------------999879999927999-99999089969


Q ss_pred             EEEEEC
Q ss_conf             999709
Q 002736          881 KILEMV  886 (886)
Q Consensus       881 ~iw~l~  886 (886)
                      +||+++
T Consensus       331 ~vWdl~  336 (337)
T d1gxra_         331 TVYEVI  336 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999778

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-45  Score=295.75  Aligned_cols=322  Identities=22%  Similarity=0.366  Sum_probs=260.6

Q ss_pred             CCCCCCCCEEEEEECCCEEEE-EECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC----------
Q ss_conf             045334624786413744889-920573358999889999968999899996899199997586447566----------
Q 002736          537 INPFLEGLCKYLSFSKLRVKA-DLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENR----------  605 (886)
Q Consensus       537 ~~~~~dg~~~~~~~~~~~~~~-~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~----------  605 (886)
                      +.+..++...+|+....+... .+  ....+|.+.|+|++|+|||++||+|+ |+.|+||++.+......          
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVEL--HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEE--EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             CCCCCCCCEEEECCCCCCCEEEEE--EEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf             246889708986887776205410--76079999689999999999999994-994899981364057663166544324


Q ss_pred             -CCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf             -5333348723789801699807999869996289919999878862788812358749999981399998999818994
Q 002736          606 -DIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGS  684 (886)
Q Consensus       606 -~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~  684 (886)
                       ..........+...|.+++|+| ++++|++|+.||.|++||...++.+..+.+|...|+++.+++ ++..+++++.++.
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~  186 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRT  186 (388)
T ss_dssp             ----------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             CCCCCCCCCCCCCCCEEEEEECC-CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEE
T ss_conf             43211101467789889999889-998012134441111211111111111111111111101111-1111112221015


Q ss_pred             EEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEE-------EECCCCCEE
Q ss_conf             9999475034442047303445327986999981899968999938990999965899834699-------912799867
Q 002736          685 VKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT-------LIGHNKTVS  757 (886)
Q Consensus       685 v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~-------~~~h~~~V~  757 (886)
                      +++||...       ..............++.+.+.++.+|++|+.|+.|++||.++... ...       ..+|...|.
T Consensus       187 i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~  258 (388)
T d1erja_         187 VRIWDLRT-------GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVY  258 (388)
T ss_dssp             EEEEETTT-------TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEE
T ss_pred             EEEEECCC-------CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCC-CEEECCCCCCCCCCCCCEE
T ss_conf             65410111-------111000012454421123688787589973898199963455730-0010244333457789878


Q ss_pred             EEEEC-CCCEEEEEECCCCEEEEECCCCCCCC------CCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             99964-99989999789949999479997665------698813860678853499991399999998499929997139
Q 002736          758 YVKFV-DATTLVSASTDNTLKLWDLSMCTSRV------IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       758 ~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~------~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~  830 (886)
                      ++.|+ ++.+|++++.|+.|++||++......      ..........|...|.+++|+|++.+|++|+.||.|++||+.
T Consensus       259 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf             99997999999999789928987515776432101344420011012455327899988999999999698979999999


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEE------CCCCCCEEEEEECCCCEEEEEE
Q ss_conf             998610103579999998855667995999999------0699959999847997999970
Q 002736          831 FPMPALSFNFNHADPLSGPETDDAAQFISSVCW------RGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~------~~~~~~~lvs~~~dg~I~iw~l  885 (886)
                      +++++..+.             +|...|.+++|      +|++. +|++|+.||+|++|++
T Consensus       339 ~~~~~~~l~-------------~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         339 SGNPLLMLQ-------------GHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKY  385 (388)
T ss_dssp             TCCEEEEEE-------------CCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEE
T ss_pred             CCCEEEEEE-------------CCCCCEEEEEEECCCCCCCCCC-EEEEEECCCEEEEEEE
T ss_conf             996999996-------------8899789999846742589999-9999918997999762

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-42  Score=278.67  Aligned_cols=284  Identities=19%  Similarity=0.291  Sum_probs=251.5

Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCE
Q ss_conf             33589998899999689998999968991999975864475665333348723789801699807999869996289919
Q 002736          563 DLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVV  642 (886)
Q Consensus       563 ~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V  642 (886)
                      .|.||.+.|++++|+|++++||||+.|+.|+|||+.+...       ......|...|.+++|++ ++..++++..++.+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-------~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~   83 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-------ERTLKGHTDSVQDISFDH-SGKLLASCSADMTI   83 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-------CEEECCCSSCEEEEEECT-TSSEEEEEETTSCC
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-------EEEEECCCCCEEEEEEEC-CCCCCCCCCCCCCC
T ss_conf             9858888768999938989999993899299998999979-------999957888677776301-11101111111110


Q ss_pred             EEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEE-CCCCEEEEEEECCC
Q ss_conf             99987886278881235874999998139999899981899499994750344420473034453-27986999981899
Q 002736          643 QVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDS  721 (886)
Q Consensus       643 ~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~  721 (886)
                      .+|+....+....+..|...+.++.|+| ++..+++++.|+.+++||+++       +.....+. +...+.+++|+|+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-  154 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQT-------GYCVKTFTGHREWVRMVRPNQD-  154 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEEEECTT-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCEEEEECCCCCEEEEECCC-------CEEEEEECCCCCCCEEEECCCC-
T ss_conf             1110011111111000000000000169-985577652675235751144-------3034687167776300001667-


Q ss_pred             CCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC---------------------CCCEEEEEECCCCEEEEE
Q ss_conf             96899993899099996589983469991279986799964---------------------999899997899499994
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV---------------------DATTLVSASTDNTLKLWD  780 (886)
Q Consensus       722 ~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~---------------------~~~~l~sgs~Dg~I~iwd  780 (886)
                      +.++++++.|+.|++|++++.. ....+.+|...+.++.|.                     .+..+++++.|+.|++||
T Consensus       155 ~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  233 (317)
T d1vyhc1         155 GTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD  233 (317)
T ss_dssp             SSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred             CCEEEEEECCCEEEEEEECCCE-EEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEE
T ss_conf             9999999279829997512540-347882477873379986325641110345630343025886147516997899988


Q ss_pred             CCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             79997665698813860678853499991399999998499929997139998610103579999998855667995999
Q 002736          781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISS  860 (886)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  860 (886)
                      ++++      .++.++.+|.+.|.+++++|++.+|++|+.||.|++||+..++++..+.             +|...|++
T Consensus       234 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~V~~  294 (317)
T d1vyhc1         234 VSTG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------------AHEHFVTS  294 (317)
T ss_dssp             TTTT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------------CCSSCEEE
T ss_pred             CCCC------CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------------CCCCCEEE
T ss_conf             8999------6889996889987999987999999999798949999999991999992-------------89998899


Q ss_pred             EEECCCCCCEEEEEECCCCEEEEE
Q ss_conf             999069995999984799799997
Q 002736          861 VCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       861 v~~~~~~~~~lvs~~~dg~I~iw~  884 (886)
                      ++|+|+++ +|++|+.||+|++|+
T Consensus       295 ~~~s~~~~-~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAP-YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSS-CEEEEETTSEEEEEC
T ss_pred             EEECCCCC-EEEEEECCCEEEEEC
T ss_conf             99949999-999992899499829

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-41  Score=274.00  Aligned_cols=301  Identities=14%  Similarity=0.130  Sum_probs=231.8

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEE
Q ss_conf             99988999996899989999689919999758644756653333487237898016998079998699962899199998
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       567 h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd  646 (886)
                      ..++|+|++|+|||++||+|+.|+.|+||+.+...     ........+|.+.|.+++|+| ++++|++++.|++|++||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-----EEEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEE
T ss_conf             99883899998999999999488989999888997-----899999558899888999979-999999997999399986


Q ss_pred             CCCCEE--EEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEE-ECCCCEEEEEEECCCCC
Q ss_conf             788627--888123587499999813999989998189949999475034442047303445-32798699998189996
Q 002736          647 VSRSQV--LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTI-KTKANVCCVQFPLDSGR  723 (886)
Q Consensus       647 ~~~~~~--~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~  723 (886)
                      +.++..  ...+.+|...|++++|+| ++..|++|+.|+++++|++.......   ...... .+...|.+++|+|+ +.
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~---~~~~~~~~~~~~v~~v~~~p~-~~  154 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWW---VCKHIKKPIRSTVLSLDWHPN-SV  154 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEE---EEEEECTTCCSCEEEEEECTT-SS
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEECCCCCCEEEEEECCCCCC---CCCCCCCCCCCCCCCCCCCCC-CC
T ss_conf             20332110012232211000111111-12110000025763025442033433---111001011122211111111-11


Q ss_pred             EEEEEECCCEEEEEECCCCC-----------------CCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCC
Q ss_conf             89999389909999658998-----------------3469991279986799964-99989999789949999479997
Q 002736          724 SLAFGSADHRIYYYDLRNSK-----------------IPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCT  785 (886)
Q Consensus       724 ~l~~gs~dg~I~iwDl~~~~-----------------~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~  785 (886)
                      +|++|+.|+.|++||+....                 ..+....+|...|.+++|+ +++.+++++.|+.|++||+..+ 
T Consensus       155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-  233 (371)
T d1k8kc_         155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-  233 (371)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-
T ss_pred             CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC-
T ss_conf             1000134767999840157643100122111111110112440476674789875123321000014786058864101-


Q ss_pred             CCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCC--------------------
Q ss_conf             665698813860678853499991399999998499929997139998610103579999--------------------
Q 002736          786 SRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADP--------------------  845 (886)
Q Consensus       786 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~--------------------  845 (886)
                           ..+..+.+|..+|++++|+|++.+|++|+ |+.+++|..........+......+                    
T Consensus       234 -----~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (371)
T d1k8kc_         234 -----MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  307 (371)
T ss_dssp             -----TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             -----CCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCE
T ss_conf             -----21000001466520365469997999981-992678776089862887202067654212462200168506520


Q ss_pred             -------CCC-CCCCCCCCCEEEEEECCCCC---CEEEEEECCCCEEEEEE
Q ss_conf             -------998-85566799599999906999---59999847997999970
Q 002736          846 -------LSG-PETDDAAQFISSVCWRGQSS---NTLVAANSSGNIKILEM  885 (886)
Q Consensus       846 -------~~~-~~~~~~~~~V~~v~~~~~~~---~~lvs~~~dg~I~iw~l  885 (886)
                             ... .....|...|+++++.+...   ..++|++.||.|++|++
T Consensus       308 ~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEEC
T ss_conf             587124556614125556988999994899865679999918993999969

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=268.17  Aligned_cols=270  Identities=21%  Similarity=0.274  Sum_probs=231.9

Q ss_pred             CCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECC
Q ss_conf             04533462478641374488992057335899988999996899989999689919999758644756653333487237
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMAS  616 (886)
Q Consensus       537 ~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  616 (886)
                      +....||.+++|++.+......+......+|.+.|.+++|+||+++|++|+.|+.|++|++.....     ........|
T Consensus        66 latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~  140 (337)
T d1gxra_          66 VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-----RIKAELTSS  140 (337)
T ss_dssp             EEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------EEEEEEECS
T ss_pred             EEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC-----CCCCCCCCC
T ss_conf             999979988997736776331168764048899689999867998898861233211111111111-----111111111


Q ss_pred             CCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHH
Q ss_conf             89801699807999869996289919999878862788812358749999981399998999818994999947503444
Q 002736          617 RSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILL  696 (886)
Q Consensus       617 ~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~  696 (886)
                      ...+.+++|++ ++.++++++.|+.|.+|++.+++.......|...|++++|++ ++..+++|+.|+.+++||+++    
T Consensus       141 ~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~----  214 (337)
T d1gxra_         141 APACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE----  214 (337)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT----
T ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC----
T ss_conf             11111111111-111111111111111111111111111111111111012344-432112235665532111111----


Q ss_pred             HCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCC
Q ss_conf             204730344532798699998189996899993899099996589983469991279986799964-9998999978994
Q 002736          697 LHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNT  775 (886)
Q Consensus       697 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~  775 (886)
                         +..+..+.+...|.+++|+|+ +..+++|+.|+.+++||++...  ......|...|.+++|+ ++.+|++++.||.
T Consensus       215 ---~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         215 ---GRQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             ---TEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ---CEEECCCCCCCCEEEEEECCC-CCCCCEECCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEECCCCCEEEEEECCCE
T ss_conf             ---000002466661579997153-0300000025642111111111--0000124565416999899999999948996


Q ss_pred             EEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             9999479997665698813860678853499991399999998499929997139
Q 002736          776 LKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       776 I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~  830 (886)
                      |++||+..+.      ++.. .+|...|.+++|+|++++|++|+.|+.|+||++-
T Consensus       289 i~iwd~~~~~------~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         289 LNAWRTPYGA------SIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTTCC------EEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEEECCCCC------EEEE-CCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEE
T ss_conf             9999899997------9999-2699987999992799999999089969999778

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-45  Score=297.10  Aligned_cols=209  Identities=14%  Similarity=0.181  Sum_probs=166.0

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22235734420465456789977633443358962999851-78523445049999868689999999999999951014
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      +.+|.  ..+...+|+|++.+++ ++.   ..+.++++||| .|++|.+++.+  ..+++.+++.|++||+.||.|||++
T Consensus        64 ~~~E~--~il~~l~HpnIv~~~~-~~~---~~~~~~ivmEy~~gg~L~~~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~  135 (293)
T d1yhwa1          64 IINEI--LVMRENKNPNIVNYLD-SYL---VGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSN  135 (293)
T ss_dssp             HHHHH--HHHHHCCCTTBCCEEE-EEE---ETTEEEEEEECCTTCBHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH--HHHHHCCCCCEEEEEE-EEE---ECCEEEEEEEECCCCCHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999--9998679998805857-798---89998999970379808988641--5999999999999999999999987


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++++|++|||+++.+..+..                                            
T Consensus       136 ~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~--------------------------------------------  171 (293)
T d1yhwa1         136 QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--------------------------------------------  171 (293)
T ss_dssp             TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--------------------------------------------
T ss_pred             CCCCCCCCHHHEEECCCCCEEECCCHHHEEECCCCC--------------------------------------------
T ss_conf             972267768886887899686425156413213666--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             55633446776676321125755444444444300000237898850332024662003513279998864651018899
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvi  261 (886)
                                                                    .....+||+.|+|||++.+.+|+.++|||||||+
T Consensus       172 ----------------------------------------------~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvi  205 (293)
T d1yhwa1         172 ----------------------------------------------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIM  205 (293)
T ss_dssp             ----------------------------------------------CBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCCCCCCCCCCCHHHHCCCCCCCHHCEEHHHHH
T ss_conf             ----------------------------------------------4444444777368266447998801203137299


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHCCCCC-CHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             999732---89999434677675303789-902221590359999971599999998988886198877986
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVL-PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       262 l~ell~---pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      +|||++   ||.................. .+.+...++.+.+|+.+||.+||.+|||+.|+|+||||+...
T Consensus       206 lyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~~~  277 (293)
T d1yhwa1         206 AIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAK  277 (293)
T ss_dssp             HHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf             999804889989979999999998579998888553799999999998669966890999996499657788

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-39  Score=262.60  Aligned_cols=283  Identities=15%  Similarity=0.219  Sum_probs=237.3

Q ss_pred             CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEE
Q ss_conf             35899988999996899989999689919999758644756653333487237898016998079998699962899199
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~  643 (886)
                      |.||.+.|++++|+|++++||||+.||.|+|||+.+..       .......|...|.+++|+| ++.++++++.|+.+.
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICS  122 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-------EEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCE-------EEEEEECCCCCEEEEEEEC-CCEEEEEECCCCEEE
T ss_conf             88878988899998999999999789955563102102-------5799724653377567601-211443101332010


Q ss_pred             EEECCCC----EEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             9987886----278881235874999998139999899981899499994750344420473034453279869999818
Q 002736          644 VWDVSRS----QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL  719 (886)
Q Consensus       644 iWd~~~~----~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  719 (886)
                      +|+....    .....+.+|..........  ....+..+..|.....|.....      ............+.+..+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  194 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETG------QQTTTFTGHTGDVMSLSLAP  194 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEE--ETTEEEEEETTTEEEEEETTTT------EEEEEEECCSSCEEEEEECT
T ss_pred             CCCCCCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCEEEEEECCCC
T ss_conf             133222212221110013542110111111--1111111124454320012322------11111233101576300124


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEE--
Q ss_conf             9996899993899099996589983469991279986799964-9998999978994999947999766569881386--
Q 002736          720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF--  796 (886)
Q Consensus       720 ~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--  796 (886)
                      . ..++++|+.|+.|++||+++.+ ++..+.+|...|.+++|+ ++.+|++|+.|+.|++||++....      +..+  
T Consensus       195 ~-~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~------~~~~~~  266 (340)
T d1tbga_         195 D-TRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE------LMTYSH  266 (340)
T ss_dssp             T-SSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------EEEECC
T ss_pred             C-CCEEEEEECCCEEEEEECCCCC-EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC------CCCCCC
T ss_conf             4-2126876057369999999994-8899957889858999979989999996999699975212211------111112


Q ss_pred             ECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             06788534999913999999984999299971399986101035799999988556679959999990699959999847
Q 002736          797 TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANS  876 (886)
Q Consensus       797 ~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~  876 (886)
                      ..+...+.+++|+|++.+|++|+.||.|++||+..++++..+.             +|...|++++|+|++. +|++|+.
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~H~~~V~~l~~s~d~~-~l~s~s~  332 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-------------GHDNRVSCLGVTDDGM-AVATGSW  332 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-------------CCSSCEEEEEECTTSS-CEEEEET
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------------CCCCCEEEEEEECCCC-EEEEECC
T ss_conf             2445745899998999999999797989999999993989984-------------8999789999908999-9999906


Q ss_pred             CCCEEEEE
Q ss_conf             99799997
Q 002736          877 SGNIKILE  884 (886)
Q Consensus       877 dg~I~iw~  884 (886)
                      ||+|++|+
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEEC
T ss_conf             99799859

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-45  Score=297.77  Aligned_cols=213  Identities=13%  Similarity=0.159  Sum_probs=167.6

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|++|.  ..+..-+|+|++.+++ ++.   ..+.++++||| .|++|.++|.+. ..+++.+++.+++||+.||.|||+
T Consensus        49 ~~~~Ei--~~l~~l~HpnIv~~~~-~~~---~~~~~~ivmEy~~gg~L~~~l~~~-~~l~e~~~~~i~~qi~~al~ylH~  121 (271)
T d1nvra_          49 NIKKEI--CINKMLNHENVVKFYG-HRR---EGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYLHG  121 (271)
T ss_dssp             CHHHHH--HHHHTCCCTTBCCEEE-EEE---ETTEEEEEEECCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHCCCCCEEEEEE-EEC---CCCEEEEEEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999--9998579988846965-404---674367988645898089997537-999999999999999999999997


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             47042256876045324885345307766799999631122222344468899997303333210112344345688885
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (886)
                      +||+||||||+|||++..+.+|++|||+++....+...                                          
T Consensus       122 ~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~------------------------------------------  159 (271)
T d1nvra_         122 IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE------------------------------------------  159 (271)
T ss_dssp             TTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEE------------------------------------------
T ss_pred             CCCCCCCCCHHHEEECCCCCEEECCCHHHEEECCCCCC------------------------------------------
T ss_conf             59835754689978878998798323142240468865------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCC-CCCCCCCHHH
Q ss_conf             355633446776676321125755444444444300000237898850332024662003513279998-8646510188
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPV-SCASDIYRLG  259 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~-t~~sDIwSlG  259 (886)
                                                                    ......+||+.|+|||++.+.++ +.++||||||
T Consensus       160 ----------------------------------------------~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlG  193 (271)
T d1nvra_         160 ----------------------------------------------RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCG  193 (271)
T ss_dssp             ----------------------------------------------CCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCCCEEECCCCCCHHHHCCCCCCCCCEEEEHHH
T ss_conf             ----------------------------------------------3111325574742872861899999710161737


Q ss_pred             HHHHHHHC---CCCCCCHHHHHHHHHCC-CCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             99999732---89999434677675303-789902221590359999971599999998988886198877986
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSLRH-RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       260 vil~ell~---pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      |+||||++   ||............... ....+.+...++.+.+|+.+||..||.+|||+.|+++||||+...
T Consensus       194 vilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~~l  267 (271)
T d1nvra_         194 IVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL  267 (271)
T ss_dssp             HHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf             99999982997888898599999998638887886446999999999997679966890999996198458598

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-40  Score=266.38  Aligned_cols=290  Identities=15%  Similarity=0.167  Sum_probs=233.3

Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf             58999889999968999899996899199997586447566533334872378980169980799986999628991999
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQV  644 (886)
Q Consensus       565 ~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~i  644 (886)
                      ..+.+.+..++++|+|+.||.++ ++.|.+|++.+...       ......|...|+|++|+| ++++|++|+.||+|++
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-------~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~i   84 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-------TEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRI   84 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-------CEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCE-------EEEECCCCCCEEEEEEEC-CCCEEECCCCCCEEEE
T ss_conf             77788759999969989999996-99999999999966-------179747888889999948-9996722556736746


Q ss_pred             EECCCCEE--EEEECCCCCCEEEEEECCCCCCEEEEEEC--CCCEEEEECCHHHHHHCCCCEEEEEE-CCCCEEEEEEEC
Q ss_conf             98788627--88812358749999981399998999818--99499994750344420473034453-279869999818
Q 002736          645 WDVSRSQV--LTEMREHERRVWSIDFSSADPTLLASGSD--DGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPL  719 (886)
Q Consensus       645 Wd~~~~~~--~~~~~~h~~~V~~i~~sp~~~~~l~sgs~--Dg~v~iwdl~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp  719 (886)
                      ||+.+.+.  ...+..|..+|.+++|+| ++.++++++.  +..+++|++.+       +....++. +...|.+++|+|
T Consensus        85 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~-------~~~~~~l~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          85 WDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDT-------GTSNGNLTGQARAMNSVDFKP  156 (311)
T ss_dssp             EESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTT-------CCBCBCCCCCSSCEEEEEECS
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCC
T ss_conf             6310111100001343357543323331-11000111122111111111111-------111111111111111111121


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCC-CCCCEEEE
Q ss_conf             9996899993899099996589983469991279986799964-999899997899499994799976656-98813860
Q 002736          720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVI-DTPLHSFT  797 (886)
Q Consensus       720 ~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~~~~~  797 (886)
                      ++...+++|+.|+.|++||+++.+ ....+.+|...|.++.|+ ++.++++++.|+.+++||+........ ........
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             110120001122111111111111-1111111111111123476422121111111110001244641122211111110


Q ss_pred             CCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf             67885349999139999999849992999713999861010357999999885566799599999906999599998479
Q 002736          798 GHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSS  877 (886)
Q Consensus       798 ~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~d  877 (886)
                      +|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+......          ...+.++.|++  . .|++++.|
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~----------~~~~~~~~~~~--~-~l~s~s~d  302 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI----------EDQQLGIIWTK--Q-ALVSISAN  302 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG----------GGCEEEEEECS--S-CEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC----------CCEEEEEEECC--C-EEEEEECC
T ss_conf             02465321024788999999937996999999999699999799986----------33299999519--9-99999899


Q ss_pred             CCEEEEEE
Q ss_conf             97999970
Q 002736          878 GNIKILEM  885 (886)
Q Consensus       878 g~I~iw~l  885 (886)
                      |.|++|++
T Consensus       303 G~i~~wd~  310 (311)
T d1nr0a1         303 GFINFVNP  310 (311)
T ss_dssp             CCEEEEET
T ss_pred             CEEEEEEC
T ss_conf             97999958

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=2.7e-44  Score=292.47  Aligned_cols=207  Identities=19%  Similarity=0.234  Sum_probs=166.4

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             734420465456789977633443358962999851-7852344504999986868999999999999995101470422
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +...+...+|+|++.+++ ++.   ..+.++++||| .|++|.+++.+....+++.+++.|++||+.||.|||++||+||
T Consensus        76 Ei~il~~l~HpnIv~~~~-~~~---~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHR  151 (352)
T d1koba_          76 EISIMNQLHHPKLINLHD-AFE---DKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHL  151 (352)
T ss_dssp             HHHHHTTCCSTTBCCEEE-EEE---CSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHHHHCCCCCCCCEEE-EEE---ECCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf             999998679979891999-999---8999999998289980888898638998999999999999999999997792651


Q ss_pred             CCCCCCEEEC--CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5687604532--48853453077667999996311222223444688999973033332101123443456888853556
Q 002736          107 NVRPSCFVMS--SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       107 DlkP~Nill~--~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (886)
                      ||||+|||++  ..+.+|++|||+++....+.                                                
T Consensus       152 DiKp~NILl~~~~~~~vkL~DFGla~~~~~~~------------------------------------------------  183 (352)
T d1koba_         152 DIKPENIMCETKKASSVKIIDFGLATKLNPDE------------------------------------------------  183 (352)
T ss_dssp             CCCGGGEEESSTTCCCEEECCCTTCEECCTTS------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCEECCCCC------------------------------------------------
T ss_conf             31445531134678848995256303437887------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             33446776676321125755444444444300000237898850332024662003513279998864651018899999
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~e  264 (886)
                                                                 ......||+.|+|||++.+.+|+.++|||||||+|||
T Consensus       184 -------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilye  220 (352)
T d1koba_         184 -------------------------------------------IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYV  220 (352)
T ss_dssp             -------------------------------------------CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------CEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             -------------------------------------------2010047645348999747998976333898999999


Q ss_pred             HHC---CCCCCCHHHHHHHHHCCCC--CCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             732---8999943467767530378--9902221590359999971599999998988886198877986
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRV--LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       265 ll~---pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      |++   ||.................  ....+...++.+.+|+.+||.+||.+|||+.|+|+||||....
T Consensus       221 lltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         221 LLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             HHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf             9968899899799999999984788989300247999999999997569966891899996097348882

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2.5e-44  Score=292.56  Aligned_cols=210  Identities=18%  Similarity=0.250  Sum_probs=167.0

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22235734420465456789977633443358962999851-78523445049999868689999999999999951014
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      +++|.  ..+...+|+|++.+++ ++.   ..+.++++||| .|++|.++|.+....+++.+++.|++||+.||.|||++
T Consensus        70 ~~~E~--~il~~l~HpnIv~~~~-~~~---~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~  143 (350)
T d1koaa2          70 VRKEI--QTMSVLRHPTLVNLHD-AFE---DDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN  143 (350)
T ss_dssp             HHHHH--HHHHHTCCTTBCCEEE-EEE---ETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH--HHHHHCCCCCCCCEEE-EEE---ECCEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999--9998679979992999-999---89999999985799889999976237899999999999999999999756


Q ss_pred             CEEECCCCCCCEEECC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             7042256876045324--88534530776679999963112222234446889999730333321011234434568888
Q 002736          102 GIVVHNVRPSCFVMSS--FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       102 giiHrDlkP~Nill~~--~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                      ||+||||||+|||+..  ++.+|++|||+++.+....                                           
T Consensus       144 ~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~-------------------------------------------  180 (350)
T d1koaa2         144 NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-------------------------------------------  180 (350)
T ss_dssp             TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS-------------------------------------------
T ss_pred             CCEEEEECHHHEEECCCCCCEEEEEECCHHEECCCCC-------------------------------------------
T ss_conf             9760001546736416889869995452104425654-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             53556334467766763211257554444444443000002378988503320246620035132799988646510188
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlG  259 (886)
                                                                      ......||++|+|||++.+.+|+.++||||||
T Consensus       181 ------------------------------------------------~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlG  212 (350)
T d1koaa2         181 ------------------------------------------------SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVG  212 (350)
T ss_dssp             ------------------------------------------------CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHH
T ss_pred             ------------------------------------------------CCCEECCCCCCCCHHHHCCCCCCHHHHHHHHH
T ss_conf             ------------------------------------------------32000686242188997589987267655465


Q ss_pred             HHHHHHHC---CCCCCCHHHHHHHHHCCC---CCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf             99999732---899994346776753037---899022215903599999715999999989888861988779867
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSLRHR---VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       260 vil~ell~---pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~~  330 (886)
                      |++|||++   ||...... ..+..+...   ..+..+...++.+.+|+.+||..||.+|||+.|+|+||||.....
T Consensus       213 vilyell~G~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         213 VLSYILLSGLSPFGGENDD-ETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             HHHHHHHHSSCSSCCSSHH-HHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCTTC
T ss_pred             HHHHHHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCC
T ss_conf             9999998598998997999-999999847889894223589999999999975689667908999862913288988

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=293.55  Aligned_cols=204  Identities=18%  Similarity=0.225  Sum_probs=163.1

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22235734420465456789977633443358962999851-78523445049999868689999999999999951014
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      +++|  ...+...+|+|++.+++ ++.   ..+.++++||| .|++|.++|.+. ..+++.+++.|++||+.||.|||++
T Consensus        53 ~~~E--~~il~~l~hpnIv~~~~-~~~---~~~~~~ivmEy~~~g~L~~~l~~~-~~l~e~~~~~i~~qi~~al~~lH~~  125 (263)
T d2j4za1          53 LRRE--VEIQSHLRHPNILRLYG-YFH---DATRVYLILEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCHSK  125 (263)
T ss_dssp             HHHH--HHHHHTCCCTTBCCEEE-EEE---CSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHH--HHHHHHCCCCCCCEEEE-EEE---ECCEEEEEEEECCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999--99998568888885999-999---899989998504798589887504-8999999999999999999999988


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++.+|++|||+++.....                                              
T Consensus       126 ~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~----------------------------------------------  159 (263)
T d2j4za1         126 RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS----------------------------------------------  159 (263)
T ss_dssp             TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCC----------------------------------------------
T ss_pred             CEEEEEECCCCCEECCCCCEEECCCCEEEECCCC----------------------------------------------
T ss_conf             9465220234414668998711555633544888----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             55633446776676321125755444444444300000237898850332024662003513279998864651018899
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvi  261 (886)
                                                                    ......||+.|+|||++.+.+|+.++|||||||+
T Consensus       160 ----------------------------------------------~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvi  193 (263)
T d2j4za1         160 ----------------------------------------------RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL  193 (263)
T ss_dssp             ----------------------------------------------CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHH
T ss_pred             ----------------------------------------------CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHH
T ss_conf             ----------------------------------------------5235578876349999758998931440467599


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf             999732---899994346776753037899022215903599999715999999989888861988779
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       262 l~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~  327 (886)
                      ||||++   ||..... ...+..+.... ++.+...++++.+|+.+||.+||.+|||+.|+|+||||..
T Consensus       194 lyell~G~~Pf~~~~~-~~~~~~i~~~~-~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~  260 (263)
T d2j4za1         194 CYEFLVGKPPFEANTY-QETYKRISRVE-FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA  260 (263)
T ss_dssp             HHHHHHSSCTTCCSSH-HHHHHHHHTTC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHH
T ss_pred             HHHHHCCCCCCCCCCH-HHHHHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCC
T ss_conf             9998329999888999-99999997189-9998668999999999976479768909999971907078

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.3e-44  Score=290.50  Aligned_cols=210  Identities=17%  Similarity=0.180  Sum_probs=165.8

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .+..|  ...+.+.+|+|++.+++ ++.   ..+.++++||| .|++|.++|.+. ..+++.++..++.||+.||.|||+
T Consensus        53 ~~~~E--i~il~~l~HpnIv~l~~-~~~---~~~~~~lvmE~~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~al~ylH~  125 (307)
T d1a06a_          53 SMENE--IAVLHKIKHPNIVALDD-IYE---SGGHLYLIMQLVSGGELFDRIVEK-GFYTERDASRLIFQVLDAVKYLHD  125 (307)
T ss_dssp             --CHH--HHHHHTCCCTTBCCEEE-EEE---CSSEEEEEECCCCSCBHHHHHHTC-SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHCCCCCCCCEEE-EEE---ECCEEEEEEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999--99998679989991989-999---899888988526898488865303-678878999999999999875241


Q ss_pred             CCEEECCCCCCCEEEC---CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             4704225687604532---4885345307766799999631122222344468899997303333210112344345688
Q 002736          101 QGIVVHNVRPSCFVMS---SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus       101 ~giiHrDlkP~Nill~---~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (886)
                      +||+||||||+|||+.   .++.+|++|||+++......                                         
T Consensus       126 ~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~-----------------------------------------  164 (307)
T d1a06a_         126 LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS-----------------------------------------  164 (307)
T ss_dssp             TTCCCSCCCGGGEEESSSSTTCCEEECCC---------------------------------------------------
T ss_pred             CEEEEEEECCCCEEECCCCCCCEEEEECCCEEEECCCCC-----------------------------------------
T ss_conf             305568704630011046888249983154358725897-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCH
Q ss_conf             88535563344677667632112575544444444430000023789885033202466200351327999886465101
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwS  257 (886)
                                                                        .....+||+.|+|||++.+.+|+.++||||
T Consensus       165 --------------------------------------------------~~~~~~GT~~y~APE~~~~~~~~~~~DiwS  194 (307)
T d1a06a_         165 --------------------------------------------------VLSTACGTPGYVAPEVLAQKPYSKAVDCWS  194 (307)
T ss_dssp             ----------------------------------------------------------CTTSCHHHHTTCCCCTHHHHHH
T ss_pred             --------------------------------------------------EEEEEEECCCCCCCHHHCCCCCCCHHHHHH
T ss_conf             --------------------------------------------------044003284225918873799980787345


Q ss_pred             HHHHHHHHHC---CCCCCCHHHHHHHHHCCCC--CCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             8899999732---8999943467767530378--9902221590359999971599999998988886198877986
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRV--LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       258 lGvil~ell~---pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      |||+||||++   ||............+....  ..+.+...++.+.+|+.+||.+||.+|||+.|+++||||....
T Consensus       195 lGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  271 (307)
T d1a06a_         195 IGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDT  271 (307)
T ss_dssp             HHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTSSC
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf             15999999859799999899999999861687778766667899999999997608975791899986298447997

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-44  Score=290.72  Aligned_cols=207  Identities=14%  Similarity=0.194  Sum_probs=166.7

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222357344204654567899776334433-58962999851-7852344504999986868999999999999995101
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEA-AIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      |++|.  ..+.+.+|+|++.+++ ++++.. ....++++||| .|++|.+++.+. ..+++.+++.+++||+.||+|||+
T Consensus        55 ~~~E~--~il~~l~HpnIv~~~~-~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~-~~~~~~~~~~~~~qi~~gl~yLH~  130 (270)
T d1t4ha_          55 FKEEA--EMLKGLQHPNIVRFYD-SWESTVKGKKCIVLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHT  130 (270)
T ss_dssp             HHHHH--HHHTTCCCTTBCCEEE-EEEEESSSCEEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH--HHHHHCCCCCEEEEEE-EEEECCCCCCEEEEEEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999--9998579998506999-9840334588899999578989489997513-554699999999999999999997


Q ss_pred             CC--EEECCCCCCCEEEC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             47--04225687604532-4885345307766799999631122222344468899997303333210112344345688
Q 002736          101 QG--IVVHNVRPSCFVMS-SFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus       101 ~g--iiHrDlkP~Nill~-~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (886)
                      +|  |+||||||+|||++ .++.+|++|||+++.....                                          
T Consensus       131 ~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~------------------------------------------  168 (270)
T d1t4ha_         131 RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS------------------------------------------  168 (270)
T ss_dssp             SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT------------------------------------------
T ss_pred             CCCCEEECCCCHHHCEEECCCCCEEEEECCCCEECCCC------------------------------------------
T ss_conf             89979968767435116679998898005765423687------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCH
Q ss_conf             88535563344677667632112575544444444430000023789885033202466200351327999886465101
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwS  257 (886)
                                                                        .....+||+.|+|||++.+ +|+.++||||
T Consensus       169 --------------------------------------------------~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwS  197 (270)
T d1t4ha_         169 --------------------------------------------------FAKAVIGTPEFMAPEMYEE-KYDESVDVYA  197 (270)
T ss_dssp             --------------------------------------------------SBEESCSSCCCCCGGGGGT-CCCTHHHHHH
T ss_pred             --------------------------------------------------CCCCCCCCCCCCCHHHHCC-CCCCCCCHHH
T ss_conf             --------------------------------------------------6677553813008988478-9998671100


Q ss_pred             HHHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHH-CCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf             8899999732---8999943467767530378990222-1590359999971599999998988886198877
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLL-LKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN  326 (886)
Q Consensus       258 lGvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~  326 (886)
                      |||+||||++   ||.........+..+.....++.+. ..++++.+|+.+||.+||.+|||+.|+|+||||+
T Consensus       198 lGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         198 FGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             HHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCC
T ss_conf             7999999987889998765599999999738998656755789999999997637975892999996775409

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-43  Score=286.93  Aligned_cols=203  Identities=19%  Similarity=0.237  Sum_probs=164.0

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             34420465456789977633443358962999851-78523445049999868689999999999999951014704225
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      ...+...+|++++.+++ ++.   +.+.+|++||| .|++|.+++.+. +.+++.+++.+++||+.||.|+|++||+|||
T Consensus        56 ~~il~~l~hp~Iv~l~~-~~~---~~~~~~iv~ey~~gg~L~~~~~~~-~~~~e~~~~~~~~qil~al~ylH~~~iiHRD  130 (337)
T d1o6la_          56 SRVLQNTRHPFLTALKY-AFQ---THDRLCFVMEYANGGELFFHLSRE-RVFTEERARFYGAEIVSALEYLHSRDVVYRD  130 (337)
T ss_dssp             HHHHHSCCCTTBCCEEE-EEE---CSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCC
T ss_pred             HHHHHHCCCCCEEEEEE-EEC---CCCCCCCCEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99998679998877876-403---564211100035798605555325-6775999999999996521134315962246


Q ss_pred             CCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             68760453248853453077667999996311222223444688999973033332101123443456888853556334
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++.++++|++|||+++.......                                                  
T Consensus       131 lKP~NILl~~~g~vkl~DFG~a~~~~~~~~--------------------------------------------------  160 (337)
T d1o6la_         131 IKLENLMLDKDGHIKITDFGLCKEGISDGA--------------------------------------------------  160 (337)
T ss_dssp             CCGGGEEECTTSCEEECCCTTCBCSCCTTC--------------------------------------------------
T ss_pred             CCHHHEEECCCCCEEEEECCCCCCCCCCCC--------------------------------------------------
T ss_conf             477784765899888820565200356786--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             46776676321125755444444444300000237898850332024662003513279998864651018899999732
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC  267 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~ell~  267 (886)
                                                              .....+||++|+|||++.+.+|+.++|||||||++|||++
T Consensus       161 ----------------------------------------~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~  200 (337)
T d1o6la_         161 ----------------------------------------TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  200 (337)
T ss_dssp             ----------------------------------------CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CCCCCEECHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHH
T ss_conf             ----------------------------------------2055100889966665048988833310223067889987


Q ss_pred             ---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCC-----HHHHHCCCCCCCC
Q ss_conf             ---899994346776753037899022215903599999715999999989-----8888619887798
Q 002736          268 ---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEP  328 (886)
Q Consensus       268 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt-----~~eil~h~~~~~~  328 (886)
                         ||....... ....+.... ++.+...++++.+||.+||.+||.+|++     +.|+++||||...
T Consensus       201 G~~pf~~~~~~~-~~~~i~~~~-~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i  267 (337)
T d1o6la_         201 GRLPFYNQDHER-LFELILMEE-IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             SSCSSCCSSHHH-HHHHHHHCC-CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             CCCCCCCCCHHH-HHHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHCCCCCCCC
T ss_conf             899999969999-999985289-9898668999999998666389344225652349999729150369

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-39  Score=259.36  Aligned_cols=286  Identities=19%  Similarity=0.246  Sum_probs=224.7

Q ss_pred             CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEE
Q ss_conf             35899988999996899989999689919999758644756653333487237898016998079998699962899199
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~  643 (886)
                      +.||.+.|++++|+||+++||||+.|+.|++||+.+.....      .....|...|++++|+| ++. +++++.|+.++
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~------~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR------VFPDVHATMITGIKTTS-KGD-LFTVSWDDHLK   79 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE------CSSCSCSSCEEEEEECT-TSC-EEEEETTTEEE
T ss_pred             CCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE------EECCCCCCCEEEEEEEC-CCE-EECCCCEEEEE
T ss_conf             48888782899997999999999089929999999996889------98378877489988403-311-21023102688


Q ss_pred             EEECCCCEE---EEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECC
Q ss_conf             998788627---88812358749999981399998999818994999947503444204730344532798699998189
Q 002736          644 VWDVSRSQV---LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLD  720 (886)
Q Consensus       644 iWd~~~~~~---~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  720 (886)
                      +|+......   ......+...+.++.|+| ++..+++++ ++.+.+|+...          .........+.+++|+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~----------~~~~~~~~~~~~~~~s~~  147 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK----------LTEVPISYNSSCVALSND  147 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE----------EEEEECSSCEEEEEECTT
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CCCCCCCCCCC----------CCCCCCCCCCCCCCCCCC
T ss_conf             731677620111000111134432100112-211111222-22221111111----------111011112332211111


Q ss_pred             CCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECC
Q ss_conf             996899993899099996589983469991279986799964-9998999978994999947999766569881386067
Q 002736          721 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH  799 (886)
Q Consensus       721 ~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h  799 (886)
                       ++++++|+.|+.|++||+++..........|...|.++.|+ ++.++++++.|+.|++||+.+....   .....+.+|
T Consensus       148 -~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---~~~~~~~~h  223 (299)
T d1nr0a2         148 -KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL---AHTNSWTFH  223 (299)
T ss_dssp             -SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE---SCCCCCCCC
T ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC
T ss_conf             -1111111111111111111111111111111111111111111111111111111111111111111---111111111


Q ss_pred             CCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf             88534999913999999984999299971399986101035799999988556679959999990699959999847997
Q 002736          800 TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN  879 (886)
Q Consensus       800 ~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~  879 (886)
                      ...|++++|+|++.+|++|+.|+.|++|++..+........          ...+...|.+++|.+ +. .|++++.||+
T Consensus       224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~-~~-~l~s~s~D~~  291 (299)
T d1nr0a2         224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK----------GAHAMSSVNSVIWLN-ET-TIVSAGQDSN  291 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET----------TSSTTSCEEEEEEEE-TT-EEEEEETTSC
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEE----------CCCCCCCEEEEEECC-CC-EEEEEECCCE
T ss_conf             11111112466645138882899799998999973148983----------489889689999779-89-9999928997


Q ss_pred             EEEEEE
Q ss_conf             999970
Q 002736          880 IKILEM  885 (886)
Q Consensus       880 I~iw~l  885 (886)
                      |++|++
T Consensus       292 i~iWdl  297 (299)
T d1nr0a2         292 IKFWNV  297 (299)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
T ss_conf             999944

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.8e-44  Score=290.80  Aligned_cols=206  Identities=15%  Similarity=0.087  Sum_probs=161.5

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             734420465456789977633443358962999851-7852344504999986868999999999999995101470422
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +...+.+-+|+|++.+++ ++.   ..+.++++||| .|++|..++... ..+++.+++.|++||+.||.|||++||+||
T Consensus        65 Ei~il~~l~HpnIv~~~~-~~~---~~~~~~iv~E~~~~g~l~~~~~~~-~~l~e~~~~~i~~qi~~aL~yLH~~~iiHr  139 (309)
T d1u5ra_          65 EVRFLQKLRHPNTIQYRG-CYL---REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHNMIHR  139 (309)
T ss_dssp             HHHHHTTCCCTTBCCEEE-EEE---ETTEEEEEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred             HHHHHHHCCCCCEEEEEE-EEE---ECCEEEEEEEECCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCEECC
T ss_conf             999999778999823899-999---899889999806999457899737-999999999999999999999986897666


Q ss_pred             CCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56876045324885345307766799999631122222344468899997303333210112344345688885355633
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++.++.+|++|||+++.....                                                   
T Consensus       140 DiKp~NILl~~~~~~Kl~DFG~a~~~~~~---------------------------------------------------  168 (309)
T d1u5ra_         140 DVKAGNILLSEPGLVKLGDFGSASIMAPA---------------------------------------------------  168 (309)
T ss_dssp             CCSGGGEEEETTTEEEECCCTTCBSSSSB---------------------------------------------------
T ss_pred             CCCCCEEEECCCCCEEEEECCCCCCCCCC---------------------------------------------------
T ss_conf             78842179879997898443653346778---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCC---CCCCCCCCCCHHHHHHH
Q ss_conf             446776676321125755444444444300000237898850332024662003513279---99886465101889999
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG---APVSCASDIYRLGVLLF  263 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~---~~~t~~sDIwSlGvil~  263 (886)
                                                                 ....||+.|+|||++.+   .+|+.++|||||||++|
T Consensus       169 -------------------------------------------~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvily  205 (309)
T d1u5ra_         169 -------------------------------------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI  205 (309)
T ss_dssp             -------------------------------------------CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHH
T ss_pred             -------------------------------------------CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             -------------------------------------------7313476636889983467888672145455899999


Q ss_pred             HHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCH
Q ss_conf             9732---89999434677675303789902221590359999971599999998988886198877986742
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       264 ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~~~~  332 (886)
                      ||++   ||..................+......++.+.+|+.+||..||.+|||+.|+|+||||.....+.
T Consensus       206 el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~~~~~~  277 (309)
T d1u5ra_         206 ELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERPPT  277 (309)
T ss_dssp             HHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCCCTT
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHCHHHCCCCCCH
T ss_conf             998788999997999999999828999888788899999999997737965791899997199753789933

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-44  Score=291.75  Aligned_cols=212  Identities=14%  Similarity=0.147  Sum_probs=164.8

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|++|..  .+...+|+|++.+++ ++.   ..+.++++||| .|++|.+++.+..+.+++.+++.+++||+.||.|||+
T Consensus        55 ~~~~E~~--il~~l~HpnIv~l~~-~~~---~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~  128 (288)
T d2jfla1          55 DYMVEID--ILASCDHPNIVKLLD-AFY---YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHD  128 (288)
T ss_dssp             GTHHHHH--HHHHCCCTTBCCEEE-EEE---ETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHCCCCCCCEEEE-EEE---ECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999--998679999884988-980---0995899996279981889998628999999999999999999999998


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             47042256876045324885345307766799999631122222344468899997303333210112344345688885
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (886)
                      +||+||||||+|||++.++.+|++|||+++......                                            
T Consensus       129 ~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~--------------------------------------------  164 (288)
T d2jfla1         129 NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--------------------------------------------  164 (288)
T ss_dssp             TTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHH--------------------------------------------
T ss_pred             CCEEEEECCHHHEEECCCCCEEEEECHHHHCCCCCC--------------------------------------------
T ss_conf             898871407003148789998997161230357786--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCC-----CCCCCCCCCC
Q ss_conf             35563344677667632112575544444444430000023789885033202466200351327-----9998864651
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELA-----GAPVSCASDI  255 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~-----~~~~t~~sDI  255 (886)
                                                                    .......||+.|+|||++.     +.+|+.++||
T Consensus       165 ----------------------------------------------~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~Di  198 (288)
T d2jfla1         165 ----------------------------------------------QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADV  198 (288)
T ss_dssp             ----------------------------------------------HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHH
T ss_pred             ----------------------------------------------CCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHH
T ss_conf             ----------------------------------------------4100102562647999983202578888806657


Q ss_pred             CHHHHHHHHHHC---CCCCCCHHHHHHHHHCCCC-CCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             018899999732---8999943467767530378-9902221590359999971599999998988886198877986
Q 002736          256 YRLGVLLFELFC---PFSTGEEKTRTMSSLRHRV-LPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       256 wSlGvil~ell~---pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      |||||++|||++   ||................. ..+.+...++.+.+|+.+||.+||.+|||+.|+++||||....
T Consensus       199 wSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~~~~  276 (288)
T d2jfla1         199 WSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDS  276 (288)
T ss_dssp             HHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGCCCC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCC
T ss_conf             878999999820889999989999999997079987776566999999999997669966891999996292318898

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.1e-44  Score=289.35  Aligned_cols=204  Identities=17%  Similarity=0.186  Sum_probs=161.2

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf             34420465456789977633443358962999851-78523445049999868689999999999999951014704225
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHN  107 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrD  107 (886)
                      +..+.+.+|++++.+++ ++.   ..+.+|++||| .|++|.++|.+. ..+++.+++.+++||+.||.|||++||+|||
T Consensus        58 ~~~l~~~~hpnIv~l~~-~~~---~~~~~~ivmE~~~gg~L~~~l~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrD  132 (364)
T d1omwa3          58 LSLVSTGDCPFIVCMSY-AFH---TPDKLSFILDLMNGGDLHYHLSQH-GVFSEADMRFYAAEIILGLEHMHNRFVVYRD  132 (364)
T ss_dssp             HHHHSSSCCTTBCCEEE-EEE---CSSEEEEEECCCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HHHHHCCCCCCEEEEEE-EEE---ECCEEEEEEEECCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             99985089985889999-999---899889999914898389998732-5532789999999999999999977962204


Q ss_pred             CCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             68760453248853453077667999996311222223444688999973033332101123443456888853556334
Q 002736          108 VRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCM  187 (886)
Q Consensus       108 lkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (886)
                      |||+|||++..+.+|++|||+++.....                                                    
T Consensus       133 lKP~NILl~~~g~iKl~DFGla~~~~~~----------------------------------------------------  160 (364)
T d1omwa3         133 LKPANILLDEHGHVRISDLGLACDFSKK----------------------------------------------------  160 (364)
T ss_dssp             CSGGGEEECSSSCEEECCCTTCEECSSS----------------------------------------------------
T ss_pred             ECCCEEEECCCCCEEEEEECEEEECCCC----------------------------------------------------
T ss_conf             4422167858896798220102333788----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf             46776676321125755444444444300000237898850332024662003513279-99886465101889999973
Q 002736          188 QSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFELF  266 (886)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~t~~sDIwSlGvil~ell  266 (886)
                                                              ......||+.|+|||++.+ ..|+.++|||||||+||||+
T Consensus       161 ----------------------------------------~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyeml  200 (364)
T d1omwa3         161 ----------------------------------------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL  200 (364)
T ss_dssp             ----------------------------------------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             ----------------------------------------6433113455421687603899984410467789999998


Q ss_pred             C---CCCCCCHHHHH-HHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCC-----HHHHHCCCCCCCCC
Q ss_conf             2---89999434677-6753037899022215903599999715999999989-----88886198877986
Q 002736          267 C---PFSTGEEKTRT-MSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK-----MGELLQSEFLNEPR  329 (886)
Q Consensus       267 ~---pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt-----~~eil~h~~~~~~~  329 (886)
                      +   ||......... +........+..+...++.+.+||.+||..||.+|||     ++|+++||||....
T Consensus       201 tG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~  272 (364)
T d1omwa3         201 RGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLD  272 (364)
T ss_dssp             HSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCC
T ss_pred             HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHCCCCCCCCC
T ss_conf             599988889989999999860468887887789999999999856698880887435799997491023789

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-45  Score=295.73  Aligned_cols=207  Identities=17%  Similarity=0.173  Sum_probs=159.5

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .+.+|..  .+..-+|+|++.+++ ++.+   .+.++++||| .|++|.+++.+. ..+++.+++.++.||+.||.|||+
T Consensus        50 ~~~~Ei~--il~~l~HpnIv~l~~-~~~~---~~~~~iVmEy~~gg~L~~~l~~~-~~l~~~~~~~~~~qil~aL~yLH~  122 (322)
T d1s9ja_          50 QIIRELQ--VLHECNSPYIVGFYG-AFYS---DGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLRE  122 (322)
T ss_dssp             HHHHHGG--GGGGCCCTTBCCEEE-EEEC---SSEEEEEEECCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHCCCCCCCCEEE-EEEE---CCEEEEEEECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999--998679999994999-9998---99999999767998689987424-999999999999999999999998


Q ss_pred             C-CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             4-704225687604532488534530776679999963112222234446889999730333321011234434568888
Q 002736          101 Q-GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       101 ~-giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                      + ||+||||||+|||++.++++|++|||+|+.....                                            
T Consensus       123 ~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~--------------------------------------------  158 (322)
T d1s9ja_         123 KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--------------------------------------------  158 (322)
T ss_dssp             HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--------------------------------------------
T ss_pred             HCCEECCCCCHHHEEECCCCCEEEEECCCCCCCCCC--------------------------------------------
T ss_conf             599971445779946878998999548776256788--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             53556334467766763211257554444444443000002378988503320246620035132799988646510188
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlG  259 (886)
                                                                      .....+||++|+|||++.+.+|+.++||||+|
T Consensus       159 ------------------------------------------------~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlG  190 (322)
T d1s9ja_         159 ------------------------------------------------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMG  190 (322)
T ss_dssp             ------------------------------------------------TC---CCSSCCCCHHHHHCSCCCTTHHHHHHH
T ss_pred             ------------------------------------------------CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHH
T ss_conf             ------------------------------------------------62111377141194687589989488899899


Q ss_pred             HHHHHHHC---CCCCCCHHHHHHHHH-----------------------------------------CCCCCCHHHH-CC
Q ss_conf             99999732---899994346776753-----------------------------------------0378990222-15
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSL-----------------------------------------RHRVLPPQLL-LK  294 (886)
Q Consensus       260 vil~ell~---pf~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~-~~  294 (886)
                      |++|||++   ||.............                                         .....+.... ..
T Consensus       191 vil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (322)
T d1s9ja_         191 LSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVF  270 (322)
T ss_dssp             HHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHHHHHTSCCCCCCBTTB
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999998889989988789999998875177545774212333221111222354134778876650268766764448


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf             903599999715999999989888861988779
Q 002736          295 FPKEASFCLWLLHPEPSGRPKMGELLQSEFLNE  327 (886)
Q Consensus       295 ~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~  327 (886)
                      ++++.+|+.+||..||.+|||++|+|+||||..
T Consensus       271 s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~  303 (322)
T d1s9ja_         271 SLEFQDFVNKCLIKNPAERADLKQLMVHAFIKR  303 (322)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHH
T ss_pred             CHHHHHHHHHHCCCCHHHCCCHHHHHHCHHHCC
T ss_conf             999999999986899467908999960986476

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-44  Score=291.85  Aligned_cols=204  Identities=17%  Similarity=0.221  Sum_probs=164.9

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf             34420465456789977633443358962999851-78523445049---9998686899999999999999510147--
Q 002736           29 GVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK---PKRSVDVYECLHIFRQIVEIVYAAHSQG--  102 (886)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~---~~~~~~~~~~~~i~~qi~~~l~~lHs~g--  102 (886)
                      ...+.+.+|+|++.+++ ++.++ ....++++||| .|++|.+++.+   ....+++.+++.++.||+.||.|||++|  
T Consensus        54 ~~il~~l~HpnIv~~~~-~~~~~-~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~  131 (269)
T d2java1          54 VNLLRELKHPNIVRYYD-RIIDR-TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG  131 (269)
T ss_dssp             HHHTTSCCCTTBCCEEE-EEEC-----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHCCCCCEEEEEE-EEEEC-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999778999824899-99917-89989999956899938999985154578999999999999999999999971677


Q ss_pred             ---EEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             ---04225687604532488534530776679999963112222234446889999730333321011234434568888
Q 002736          103 ---IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       103 ---iiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                         |+||||||+|||++.++.+|++|||+++....+..                                          
T Consensus       132 ~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~------------------------------------------  169 (269)
T d2java1         132 GHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS------------------------------------------  169 (269)
T ss_dssp             --------CCGGGEEECTTSCEEECCHHHHHHC-----------------------------------------------
T ss_pred             CCCEEECCCCHHHCCCCCCCCEEEEECCCEEECCCCCC------------------------------------------
T ss_conf             88788586765425747888579800100032245777------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             53556334467766763211257554444444443000002378988503320246620035132799988646510188
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlG  259 (886)
                                                                      ......||+.|+|||++.+..|+.++||||||
T Consensus       170 ------------------------------------------------~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlG  201 (269)
T d2java1         170 ------------------------------------------------FAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLG  201 (269)
T ss_dssp             ------------------------------------------------------CCCSCCCHHHHTTCCCCHHHHHHHHH
T ss_pred             ------------------------------------------------CCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHC
T ss_conf             ------------------------------------------------55667788232799998399999389887527


Q ss_pred             HHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCC
Q ss_conf             99999732---8999943467767530378990222159035999997159999999898888619887
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL  325 (886)
Q Consensus       260 vil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~  325 (886)
                      |++|||++   ||... ........+.....++.+...++++.+|+.+||..||.+|||+.|+++|||+
T Consensus       202 vilyel~tg~~Pf~~~-~~~~~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         202 CLLYELCALMPPFTAF-SQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             HHHHHHHHSSCSCCCS-SHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             HHHHHHHHCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHCCCC
T ss_conf             8999980188998998-9999999997189988974359999999999767995579189999729819

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-43  Score=283.79  Aligned_cols=202  Identities=19%  Similarity=0.262  Sum_probs=157.5

Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCEEEEEEE-CCCCHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf             65456789977633443-358962999851-785234450499-998686899999999999999510147042256876
Q 002736           35 GDHLRNQGGLSGVCENE-AAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS  111 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~-~g~sL~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~  111 (886)
                      .+|+|++.+++ ++++. .....+|++||| .||+|.++|.+. ...+++.+++.|++||+.||.|||++||+||||||+
T Consensus        62 ~~hpnIv~l~~-~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~  140 (335)
T d2ozaa1          62 SQCPHIVRIVD-VYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPE  140 (335)
T ss_dssp             TTSTTBCCEEE-EEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGG
T ss_pred             CCCCCCCEEEE-EEEECCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             69999782989-99503468978999997789984999998627877579999999999999999999769864441002


Q ss_pred             CEEECC---CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             045324---88534530776679999963112222234446889999730333321011234434568888535563344
Q 002736          112 CFVMSS---FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       112 Nill~~---~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (886)
                      |||++.   .+.+|++|||+++......                                                    
T Consensus       141 NIll~~~~~~~~~Kl~DFG~a~~~~~~~----------------------------------------------------  168 (335)
T d2ozaa1         141 NLLYTSKRPNAILKLTDFGFAKETTSHN----------------------------------------------------  168 (335)
T ss_dssp             GEEESCSSTTCCEEECCCTTCEECCCCC----------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCCC----------------------------------------------------
T ss_conf             2011355556631135455123336888----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHC-
Q ss_conf             6776676321125755444444444300000237898850332024662003513279998864651018899999732-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~ell~-  267 (886)
                                                             ......||++|+|||++.+..|+.++|||||||+||||++ 
T Consensus       169 ---------------------------------------~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg  209 (335)
T d2ozaa1         169 ---------------------------------------SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG  209 (335)
T ss_dssp             ---------------------------------------CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTS
T ss_pred             ---------------------------------------CCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCHHHHHHHHC
T ss_conf             ---------------------------------------64322677563792777489888888887645167788658


Q ss_pred             --CCCCCCHHHH---HHHHHCCC--CC-CHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf             --8999943467---76753037--89-90222159035999997159999999898888619887798
Q 002736          268 --PFSTGEEKTR---TMSSLRHR--VL-PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~---~~~~~~~~--~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~  328 (886)
                        ||........   ....+...  .+ .+.+...++++.+|+.+||..||.+|||+.|+++||||...
T Consensus       210 ~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  278 (335)
T d2ozaa1         210 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  278 (335)
T ss_dssp             SCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHHCC
T ss_conf             899889887788999999985388888985434699999999999756996579099999709876178

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-38  Score=252.54  Aligned_cols=263  Identities=17%  Similarity=0.189  Sum_probs=216.5

Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCE
Q ss_conf             34624786413744889920573358999889999968999899996899199997586447566533334872378980
Q 002736          541 LEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKL  620 (886)
Q Consensus       541 ~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I  620 (886)
                      ..+.+.+|+..+......+     .+|.+.|++++|+|+|++||+|+.||.|++|++.....     ........|...|
T Consensus        36 ~~~~v~i~~~~~~~~~~~~-----~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v  105 (311)
T d1nr0a1          36 NGTSVYTVPVGSLTDTEIY-----TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-----ILKTTIPVFSGPV  105 (311)
T ss_dssp             ETTEEEEEETTCSSCCEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-----CEEEEEECSSSCE
T ss_pred             ECCEEEEEECCCCCEEEEE-----CCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCC-----CCCCCCCCCCCCC
T ss_conf             6999999999999661797-----47888889999948999672255673674663101111-----0000134335754


Q ss_pred             EEEEEECCCCCEEEEECC--CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCC-EEEEEECCCCEEEEECCHHHHHH
Q ss_conf             169980799986999628--991999987886278881235874999998139999-89998189949999475034442
Q 002736          621 SSICWNSYIKSQIASSNF--EGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPT-LLASGSDDGSVKLWSINQAILLL  697 (886)
Q Consensus       621 ~~i~~~~~~~~~l~s~s~--Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~-~l~sgs~Dg~v~iwdl~~~~~~~  697 (886)
                      .+++|++ ++.++++++.  +..+++|+..+++....+.+|...|++++|+| ++. .+++|+.|+.|++||+++     
T Consensus       106 ~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~-----  178 (311)
T d1nr0a1         106 KDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPP-----  178 (311)
T ss_dssp             EEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTT-----
T ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCCCCC-----
T ss_conf             3323331-11000111122111111111111111111111111111111121-1101200011221111111111-----


Q ss_pred             CCCCEEEEEE-CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEE-------ECCCCCEEEEEEC-CCCEEE
Q ss_conf             0473034453-279869999818999689999389909999658998346999-------1279986799964-999899
Q 002736          698 HLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL-------IGHNKTVSYVKFV-DATTLV  768 (886)
Q Consensus       698 ~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~-------~~h~~~V~~i~f~-~~~~l~  768 (886)
                        ......+. +...|+++.|+|+ ++++++|+.|+.|++||+++... ...+       .+|...|.+++|+ ++.+|+
T Consensus       179 --~~~~~~~~~~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  254 (311)
T d1nr0a1         179 --FKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA  254 (311)
T ss_dssp             --BEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             --CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             --1111111111111111234764-22121111111110001244641-1222111111100246532102478899999


Q ss_pred             EEECCCCEEEEECCCCCCCCCCCCCEEEECCCC-CEEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             997899499994799976656988138606788-53499991399999998499929997139
Q 002736          769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN-VKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       769 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~lasgs~dg~i~iwd~~  830 (886)
                      +|+.||+|++||++++      +++.++..|.. ....+.+.+++.++++++.||.|++||..
T Consensus       255 tgs~Dg~v~iwd~~t~------~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         255 SASADKTIKIWNVATL------KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEETTSEEEEEETTTT------EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEECCCEEEEEECCCC------CEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf             9937996999999999------69999979998633299999519999999899979999588

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-43  Score=284.49  Aligned_cols=211  Identities=18%  Similarity=0.242  Sum_probs=165.1

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22235734420465456789977633443358962999851-78523445049999868689999999999999951014
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      +.+|...  +.+.+|+|++.+++ ++.   ..+.++++||| .|++|.+++... +.+++.+++.++.||+.||.|+|++
T Consensus        55 ~~~E~~i--l~~l~HpnIv~l~~-~~~---~~~~~~ivmEy~~gg~L~~~~~~~-~~l~e~~~~~~~~qi~~al~ylH~~  127 (288)
T d1uu3a_          55 VTRERDV--MSRLDHPFFVKLYF-TFQ---DDEKLYFGLSYAKNGELLKYIRKI-GSFDETCTRFYTAEIVSALEYLHGK  127 (288)
T ss_dssp             HHHHHHH--HHHCCSTTBCCEEE-EEE---CSSEEEEEECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH--HHHCCCCCEEEEEE-EEE---ECCEEEEEEECCCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999--98768888617999-999---899889999704898777765315-9999999999999999999762165


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++.+|++|||+++.+......                                           
T Consensus       128 ~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~-------------------------------------------  164 (288)
T d1uu3a_         128 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ-------------------------------------------  164 (288)
T ss_dssp             TEECSCCSGGGEEECTTSCEEECCCTTCEECC------------------------------------------------
T ss_pred             CEECCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCC-------------------------------------------
T ss_conf             0884767741236688853886032102422567764-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             55633446776676321125755444444444300000237898850332024662003513279998864651018899
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvi  261 (886)
                                                                   ......+||+.|+|||++.+..|+.++|||||||+
T Consensus       165 ---------------------------------------------~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvi  199 (288)
T d1uu3a_         165 ---------------------------------------------ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCI  199 (288)
T ss_dssp             --------------------------------------------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHH
T ss_pred             ---------------------------------------------CCCCCCCCCCCCCCCEEECCCCCCCCCCEEHHHHH
T ss_conf             ---------------------------------------------33355567755258440026898966623045699


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHH------HHCCCCCCCCCC
Q ss_conf             999732---899994346776753037899022215903599999715999999989888------861988779867
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGE------LLQSEFLNEPRD  330 (886)
Q Consensus       262 l~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e------il~h~~~~~~~~  330 (886)
                      ||||++   ||....... .+..+.... +..+...++++.+|+.+||..||.+|||++|      +++||||.....
T Consensus       200 lyell~g~~Pf~~~~~~~-~~~~i~~~~-~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w  275 (288)
T d1uu3a_         200 IYQLVAGLPPFRAGNEYL-IFQKIIKLE-YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW  275 (288)
T ss_dssp             HHHHHHSSCSSCCSSHHH-HHHHHHTTC-CCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCC
T ss_pred             HHHHHHCCCCCCCCCHHH-HHHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCHHHHCCCCCCCCCH
T ss_conf             999803889989959999-999997189-9998547999999999985579768919789737789876976478998

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-42  Score=279.97  Aligned_cols=200  Identities=13%  Similarity=0.075  Sum_probs=160.6

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             4420465456789977633443358962999851-785234450499998686899999999999999510147042256
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+...+|++++.+++ ++.   ....++++||| .|++|.+++.+. ..+++.+++.|+.||+.||.|||++|||||||
T Consensus        93 ~il~~l~hpnIv~~~~-~~~---~~~~~~~v~e~~~~g~l~~~l~~~-~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDI  167 (350)
T d1rdqe_          93 RILQAVNFPFLVKLEF-SFK---DNSNLYMVMEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDL  167 (350)
T ss_dssp             HHHTTCCCTTBCCEEE-EEE---CSSEEEEEEECCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHHHCCCCCEEECCC-CCC---CCCCCCCCCCCCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCC
T ss_conf             9999748772740344-443---222223222233466226667515-89899999999999999899998599861767


Q ss_pred             CCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             87604532488534530776679999963112222234446889999730333321011234434568888535563344
Q 002736          109 RPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQ  188 (886)
Q Consensus       109 kP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (886)
                      ||+|||++.++++||+|||+++.....                                                     
T Consensus       168 KP~NILl~~~g~ikL~DFG~a~~~~~~-----------------------------------------------------  194 (350)
T d1rdqe_         168 KPENLLIDQQGYIQVTDFGFAKRVKGR-----------------------------------------------------  194 (350)
T ss_dssp             SGGGEEECTTSCEEECCCTTCEECSSC-----------------------------------------------------
T ss_pred             CHHHCCCCCCCCEEEEECEEEEECCCC-----------------------------------------------------
T ss_conf             999936077897886101033322566-----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHC-
Q ss_conf             6776676321125755444444444300000237898850332024662003513279998864651018899999732-
Q 002736          189 SSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~ell~-  267 (886)
                                                              .....||+.|||||++.+..|+.++|||||||+||||++ 
T Consensus       195 ----------------------------------------~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG  234 (350)
T d1rdqe_         195 ----------------------------------------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAG  234 (350)
T ss_dssp             ----------------------------------------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------------CCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             ----------------------------------------6433676356788997179988533114500789999758


Q ss_pred             --CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCC-----CHHHHHCCCCCCCCC
Q ss_conf             --89999434677675303789902221590359999971599999998-----988886198877986
Q 002736          268 --PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t~~eil~h~~~~~~~  329 (886)
                        ||.... ....+..+.... +..+...++++.+|+.+||.+||.+|+     |++++++||||....
T Consensus       235 ~~Pf~~~~-~~~~~~~i~~~~-~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~  301 (350)
T d1rdqe_         235 YPPFFADQ-PIQIYEKIVSGK-VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTD  301 (350)
T ss_dssp             SCSSCCSS-HHHHHHHHHHCC-CCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCC
T ss_pred             CCCCCCCC-HHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHCCCCCCCCC
T ss_conf             89989959-999999986179-88976689999999999834099860655345499997190515899

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-42  Score=279.86  Aligned_cols=205  Identities=13%  Similarity=0.147  Sum_probs=163.6

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22235734420465456789977633443358962999851-78523445049999868689999999999999951014
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      +++|  ...+...+|+|++.+++ ++.   ..+.++++||| .|++|.+++... ..+++..++.+++||+.||.|||++
T Consensus        51 ~~~E--~~il~~l~HpnIv~~~~-~~~---~~~~~~ivmE~~~gg~l~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~  123 (316)
T d1fota_          51 TNDE--RLMLSIVTHPFIIRMWG-TFQ---DAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAKFYAAEVCLALEYLHSK  123 (316)
T ss_dssp             HHHH--HHHHHSCCBTTBCCEEE-EEE---CSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHH--HHHHHHCCCCCHHHEEE-EEE---ECCEEEEEEEECCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             9999--99998636967533035-685---288005676503786322343222-2111007999999998765541247


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++.+|++|||+++.....                                              
T Consensus       124 ~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~----------------------------------------------  157 (316)
T d1fota_         124 DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV----------------------------------------------  157 (316)
T ss_dssp             TEECCCCCGGGEEECTTSCEEECCCSSCEECSSC----------------------------------------------
T ss_pred             CEECCCCCCHHEEECCCCCEEEECCCCCEEECCC----------------------------------------------
T ss_conf             6770556810503868998898317521671245----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             55633446776676321125755444444444300000237898850332024662003513279998864651018899
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvi  261 (886)
                                                                     .....||+.|+|||++.+.+|+.++|||||||+
T Consensus       158 -----------------------------------------------~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvi  190 (316)
T d1fota_         158 -----------------------------------------------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGIL  190 (316)
T ss_dssp             -----------------------------------------------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHH
T ss_pred             -----------------------------------------------CCCCCCCCCCCCHHHHCCCCCCCHHHCCCCCHH
T ss_conf             -----------------------------------------------643457634359999838999804304653336


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCC-----CHHHHHCCCCCCCCC
Q ss_conf             999732---89999434677675303789902221590359999971599999998-----988886198877986
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNEPR  329 (886)
Q Consensus       262 l~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t~~eil~h~~~~~~~  329 (886)
                      ||||++   ||............+....  +.+...++.+.+++.+||.+||.+|+     |++++++||||.+..
T Consensus       191 lyemltG~~Pf~~~~~~~~~~~i~~~~~--~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~  264 (316)
T d1fota_         191 IYEMLAGYTPFYDSNTMKTYEKILNAEL--RFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVV  264 (316)
T ss_dssp             HHHHHHSSCTTCCSSHHHHHHHHHHCCC--CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCC
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             8999759899999699999999970898--8997789999999999954499766643102199998193514679

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=281.30  Aligned_cols=211  Identities=15%  Similarity=0.199  Sum_probs=158.2

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             57344204654567899776334433589629998517852344504999986868999999999999995101470422
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      ++...+...+|+|++.+++ ++.   ..+.++++|||..+.+...+......+++.++..+++||+.||.|||++||+||
T Consensus        49 ~Ei~il~~l~hpnIv~~~~-~~~---~~~~~~ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHr  124 (299)
T d1ua2a_          49 REIKLLQELSHPNIIGLLD-AFG---HKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHR  124 (299)
T ss_dssp             HHHHHHHHCCCTTBCCEEE-EEC---CTTCCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHCCCCCEEEEEE-EEC---CCCCEEEHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECC
T ss_conf             9999998679999868985-422---587402204553450776554126677899999999999999988631635503


Q ss_pred             CCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56876045324885345307766799999631122222344468899997303333210112344345688885355633
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++..+.+|++|||+++....+..                                                 
T Consensus       125 DiKp~NIli~~~~~~KL~DFG~a~~~~~~~~-------------------------------------------------  155 (299)
T d1ua2a_         125 DLKPNNLLLDENGVLKLADFGLAKSFGSPNR-------------------------------------------------  155 (299)
T ss_dssp             CCCGGGEEECTTCCEEECCCGGGSTTTSCCC-------------------------------------------------
T ss_pred             CCCCCEEEECCCCCCCCCCCCCCCCCCCCCC-------------------------------------------------
T ss_conf             5776258853778411465761000578755-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCC-CCCCCCCCCHHHHHHHHH
Q ss_conf             4467766763211257554444444443000002378988503320246620035132799-988646510188999997
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~t~~sDIwSlGvil~el  265 (886)
                                                               .....+||++|+|||++.+. .|+.++|||||||++|||
T Consensus       156 -----------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el  194 (299)
T d1ua2a_         156 -----------------------------------------AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAEL  194 (299)
T ss_dssp             -----------------------------------------CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CCCCEECCHHHCCHHHHCCCCCCCHHHHHHHCCHHHHHH
T ss_conf             -----------------------------------------433020473336399972677888056436304289999


Q ss_pred             HC--CCCCCCHHHHHHHHHCCC----------------------CCC-----HHHHCCCHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             32--899994346776753037----------------------899-----0222159035999997159999999898
Q 002736          266 FC--PFSTGEEKTRTMSSLRHR----------------------VLP-----PQLLLKFPKEASFCLWLLHPEPSGRPKM  316 (886)
Q Consensus       266 l~--pf~~~~~~~~~~~~~~~~----------------------~~~-----~~~~~~~~~~~~li~~~L~~dP~~Rpt~  316 (886)
                      ++  +++........+..+...                      ..+     ..+...++.+.+|+.+||..||++|||+
T Consensus       195 ~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa  274 (299)
T d1ua2a_         195 LLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITA  274 (299)
T ss_dssp             HHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCH
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHCCCHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCCH
T ss_conf             85969999999999999999851899725452100021344303478988678565689999999999763894569089


Q ss_pred             HHHHCCCCCCCCCCC
Q ss_conf             888619887798674
Q 002736          317 GELLQSEFLNEPRDS  331 (886)
Q Consensus       317 ~eil~h~~~~~~~~~  331 (886)
                      .|+|+||||+..+.+
T Consensus       275 ~e~L~Hp~f~~~p~p  289 (299)
T d1ua2a_         275 TQALKMKYFSNRPGP  289 (299)
T ss_dssp             HHHHTSGGGTSSSCC
T ss_pred             HHHHCCHHHCCCCCC
T ss_conf             999679965789999

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-42  Score=280.01  Aligned_cols=203  Identities=18%  Similarity=0.248  Sum_probs=161.6

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf             4420465456789977633443358962999851-785234450499998686899999999999999510147042256
Q 002736           30 VELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNV  108 (886)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrDl  108 (886)
                      ..+.+.+|+|++.+++ ++.   ..+.++++||| .|++|.++|.+. ..+++.+++.+++||+.||.|||++||+||||
T Consensus        65 ~il~~l~HpnIv~~~~-~~~---~~~~~~iv~E~~~gg~L~~~i~~~-~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDi  139 (293)
T d1jksa_          65 SILKEIQHPNVITLHE-VYE---NKTDVILILELVAGGELFDFLAEK-ESLTEEEATEFLKQILNGVYYLHSLQIAHFDL  139 (293)
T ss_dssp             HHHHHCCCTTBCCEEE-EEE---CSSEEEEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHHHHCCCCCCCCEEE-EEE---ECCEEEEEEECCCCCCCCCHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEECCC
T ss_conf             9998679989993889-999---799899999867786431001035-64215578999999999987666254221133


Q ss_pred             CCCCEEECCCC----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             87604532488----53453077667999996311222223444688999973033332101123443456888853556
Q 002736          109 RPSCFVMSSFN----HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       109 kP~Nill~~~~----~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (886)
                      ||+|||++..+    .+|++|||++.......                                                
T Consensus       140 Kp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~------------------------------------------------  171 (293)
T d1jksa_         140 KPENIMLLDRNVPKPRIKIIDFGLAHKIDFGN------------------------------------------------  171 (293)
T ss_dssp             SGGGEEESCSSSSSCCEEECCCTTCEECTTSC------------------------------------------------
T ss_pred             CCCEEEEECCCCCCCCEEECCHHHHHHCCCCC------------------------------------------------
T ss_conf             30127982589866646964334421057776------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             33446776676321125755444444444300000237898850332024662003513279998864651018899999
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~e  264 (886)
                                                                 ......||+.|+|||++.+..|+.++|||||||++||
T Consensus       172 -------------------------------------------~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilye  208 (293)
T d1jksa_         172 -------------------------------------------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYI  208 (293)
T ss_dssp             -------------------------------------------BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             -------------------------------------------CCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             -------------------------------------------3122477774309999818999976652214099999


Q ss_pred             HHC---CCCCCCHHHHHHHHHCCCC--C-CHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             732---8999943467767530378--9-902221590359999971599999998988886198877986
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRV--L-PPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       265 ll~---pf~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      |++   ||...... ..+..+....  . ++.+...++.+.+|+.+||.+||.+|||+.|+++||||+...
T Consensus       209 ll~g~~Pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  278 (293)
T d1jksa_         209 LLSGASPFLGDTKQ-ETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKD  278 (293)
T ss_dssp             HHHSSCSSCCSSHH-HHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC--
T ss_pred             HHCCCCCCCCCCHH-HHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCC
T ss_conf             97088998899999-99999981688887010478899999999998638966891999996190418887

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-42  Score=278.89  Aligned_cols=196  Identities=16%  Similarity=0.145  Sum_probs=158.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCC----------------------CCCCHHHHHHHHHHH
Q ss_conf             65456789977633443358962999851-7852344504999----------------------986868999999999
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK----------------------RSVDVYECLHIFRQI   91 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~----------------------~~~~~~~~~~i~~qi   91 (886)
                      .+|+|++.+++ +|.   ..+.++++||| .||+|.++|....                      ..+++.+++.|+.||
T Consensus        98 ~~HpnIv~l~~-~~~---~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  173 (325)
T d1rjba_          98 GSHENIVNLLG-ACT---LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQV  173 (325)
T ss_dssp             CCCTTBCCEEE-EEC---SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEE-EEE---ECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             58996868778-886---29958999972799959999986257775102210000122200125778999999999999


Q ss_pred             HHHHHHHCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             99999510147042256876045324885345307766799999631122222344468899997303333210112344
Q 002736           92 VEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDL  171 (886)
Q Consensus        92 ~~~l~~lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (886)
                      +.||.|||++||+||||||+||+++.++.+|++|||+++........                                 
T Consensus       174 ~~gl~yLH~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~---------------------------------  220 (325)
T d1rjba_         174 AKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNY---------------------------------  220 (325)
T ss_dssp             HHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTS---------------------------------
T ss_pred             HHHHHHHHHCCEEECCCCHHCCCCCCCCEEEEEECCCCCCCCCCCCE---------------------------------
T ss_conf             99999997399050527032144345982898514222204577861---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCC
Q ss_conf             34568888535563344677667632112575544444444430000023789885033202466200351327999886
Q 002736          172 QLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSC  251 (886)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~  251 (886)
                                                                             .......||+.|+|||++.+..|+.
T Consensus       221 -------------------------------------------------------~~~~~~~gt~~y~aPE~l~~~~~~~  245 (325)
T d1rjba_         221 -------------------------------------------------------VVRGNARLPVKWMAPESLFEGIYTI  245 (325)
T ss_dssp             -------------------------------------------------------EEETTEEECGGGCCHHHHHHCCCCH
T ss_pred             -------------------------------------------------------EEECCCCCCCCCCCHHHHCCCCCCC
T ss_conf             -------------------------------------------------------5623435787657838872799996


Q ss_pred             CCCCCHHHHHHHHHHC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             4651018899999732----8999943467767530378990222159035999997159999999898888619
Q 002736          252 ASDIYRLGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       252 ~sDIwSlGvil~ell~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      ++|||||||+||||++    ||............+.....++.+...++.+.+|+.+||..||.+|||+.|+++|
T Consensus       246 ~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         246 KSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             330300039999998389999999898999999985699899887678999999999758896689399999999

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-37  Score=246.12  Aligned_cols=279  Identities=22%  Similarity=0.315  Sum_probs=224.6

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECC-------------CCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf             00453346247864137448899205-------------73358999889999968999899996899199997586447
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQ-------------GDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN  602 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~-------------~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~  602 (886)
                      +++.-.|+.+++|+..+.+....+..             .....|...|++++|+|++++|++|+.||.|++|+....  
T Consensus        76 ~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~--  153 (388)
T d1erja_          76 YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--  153 (388)
T ss_dssp             EEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT--
T ss_pred             EEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCC--
T ss_conf             999994994899981364057663166544324432111014677898899998899980121344411112111111--


Q ss_pred             CCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf             56653333487237898016998079998699962899199998788627888123587499999813999989998189
Q 002736          603 ENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDD  682 (886)
Q Consensus       603 ~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~D  682 (886)
                           ........|...|.++.|++ ++..+++++.+|.+++||..+.........+ ....++.+.+.++.+|++|+.|
T Consensus       154 -----~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d  226 (388)
T d1erja_         154 -----KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLD  226 (388)
T ss_dssp             -----EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECSTTCCEEEEEETT
T ss_pred             -----CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECCC
T ss_conf             -----11111111111111101111-1111112221015654101111110000124-5442112368878758997389


Q ss_pred             CCEEEEECCHHHHHHCCCCEEEE-EECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC-----------CEEEEE
Q ss_conf             94999947503444204730344-532798699998189996899993899099996589983-----------469991
Q 002736          683 GSVKLWSINQAILLLHLGVSIGT-IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-----------PLCTLI  750 (886)
Q Consensus       683 g~v~iwdl~~~~~~~~~~~~~~~-~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~-----------~~~~~~  750 (886)
                      +.|++|+..+......+...... ..+...|.+++|+|+ +.+|++|+.|+.|++||+++...           ......
T Consensus       227 ~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  305 (388)
T d1erja_         227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI  305 (388)
T ss_dssp             SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC---------------CEEEEEE
T ss_pred             CEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf             819996345573000102443334577898789999799-9999999789928987515776432101344420011012


Q ss_pred             CCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEE------ECCCCEEEEECCCCC
Q ss_conf             279986799964-9998999978994999947999766569881386067885349999------139999999849992
Q 002736          751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGL------SVWDGYVATGSETNE  823 (886)
Q Consensus       751 ~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~------sp~~~~lasgs~dg~  823 (886)
                      .|...|.+++|+ ++.+|++|+.||.|++||++++      +++.++.+|.+.|.++++      +|++.+|++||.||.
T Consensus       306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~------~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~  379 (388)
T d1erja_         306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  379 (388)
T ss_dssp             CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC------CEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCE
T ss_conf             45532789998899999999969897999999999------699999688997899998467425899999999918997


Q ss_pred             EEEEECC
Q ss_conf             9997139
Q 002736          824 VFVYHKA  830 (886)
Q Consensus       824 i~iwd~~  830 (886)
                      |+||++.
T Consensus       380 I~iW~~~  386 (388)
T d1erja_         380 ARIWKYK  386 (388)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
T ss_conf             9997621

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-42  Score=277.14  Aligned_cols=199  Identities=18%  Similarity=0.249  Sum_probs=162.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             465456789977633443358962999851-7852344504999986868999999999999995101470422568760
Q 002736           34 HGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSC  112 (886)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~N  112 (886)
                      ..+|++++.+++ ++.   ..+.+|++||| .|++|.+++... ..+++.+++.+++||+.||.|||++||+||||||+|
T Consensus        59 ~~~hp~Iv~~~~-~~~---~~~~~yivmEy~~~g~L~~~i~~~-~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~N  133 (320)
T d1xjda_          59 AWEHPFLTHMFC-TFQ---TKENLFFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDN  133 (320)
T ss_dssp             HTTCTTBCCEEE-EEE---CSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGG
T ss_pred             HCCCCCEEEEEE-EEC---CCCCEEEEEEECCCCCHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
T ss_conf             479996878988-970---498316777503798089986404-789999999999999999999986893403476540


Q ss_pred             EEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             45324885345307766799999631122222344468899997303333210112344345688885355633446776
Q 002736          113 FVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSA  192 (886)
Q Consensus       113 ill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (886)
                      ||++..+++|++|||+++.......                                                       
T Consensus       134 iL~~~~~~~kl~DFG~a~~~~~~~~-------------------------------------------------------  158 (320)
T d1xjda_         134 ILLDKDGHIKIADFGMCKENMLGDA-------------------------------------------------------  158 (320)
T ss_dssp             EEECTTSCEEECCCTTCBCCCCTTC-------------------------------------------------------
T ss_pred             EEECCCCCEECCCCCHHHHCCCCCC-------------------------------------------------------
T ss_conf             4444899630155530232356653-------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CC
Q ss_conf             676321125755444444444300000237898850332024662003513279998864651018899999732---89
Q 002736          193 YGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PF  269 (886)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~ell~---pf  269 (886)
                                                         ..+...||++|+|||++.+.+|+.++|||||||++|||++   ||
T Consensus       159 -----------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF  203 (320)
T d1xjda_         159 -----------------------------------KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF  203 (320)
T ss_dssp             -----------------------------------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             -----------------------------------CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             -----------------------------------345457877768999982799883232011227898987388999


Q ss_pred             CCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHH-HHHCCCCCCCCC
Q ss_conf             999434677675303789902221590359999971599999998988-886198877986
Q 002736          270 STGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMG-ELLQSEFLNEPR  329 (886)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~-eil~h~~~~~~~  329 (886)
                      .... ....+..+.... +..+...++++.+|+.+||.+||.+||++. ++++||||....
T Consensus       204 ~~~~-~~~~~~~i~~~~-~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~~  262 (320)
T d1xjda_         204 HGQD-EEELFHSIRMDN-PFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREIN  262 (320)
T ss_dssp             CCSS-HHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCC
T ss_pred             CCCC-HHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHCCCC
T ss_conf             9989-999999997189-9897567999999999965448987838899998090131589

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-42  Score=276.47  Aligned_cols=214  Identities=14%  Similarity=0.148  Sum_probs=158.7

Q ss_pred             CCCC-CCCEEECCCCCCCCCCCCCCCCCCC--CCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             2223-5734420465456789977633443--358962999851-78523445049999868689999999999999951
Q 002736           23 LRKH-SDGVELTHGDHLRNQGGLSGVCENE--AAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAA   98 (886)
Q Consensus        23 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~l   98 (886)
                      +.+| ..+..+...+|+|++.+++ ++...  .....++++||+ .++.+..........+++..++.+++||+.||.||
T Consensus        54 ~~~E~~~l~~l~~~~HpnIv~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  132 (305)
T d1blxa_          54 TIREVAVLRHLETFEHPNVVRLFD-VCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL  132 (305)
T ss_dssp             HHHHHHHHHHHHHTCCTTBCCEEE-EEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEE-EECCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999999874258988023663-2214666667469999974058714444430378999899999999999999999


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             01470422568760453248853453077667999996311222223444688999973033332101123443456888
Q 002736           99 HSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT  178 (886)
Q Consensus        99 Hs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (886)
                      |++||+||||||+|||++..+.+|++|||+++......                                          
T Consensus       133 H~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~------------------------------------------  170 (305)
T d1blxa_         133 HSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM------------------------------------------  170 (305)
T ss_dssp             HHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG------------------------------------------
T ss_pred             HHCCEEECCCCCCEEEECCCCCEEECCHHHHHHHCCCC------------------------------------------
T ss_conf             75889835798627898589975421000101100234------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHH
Q ss_conf             85355633446776676321125755444444444300000237898850332024662003513279998864651018
Q 002736          179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRL  258 (886)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSl  258 (886)
                                                                       ......||+.|+|||++.+.+|+.++|||||
T Consensus       171 -------------------------------------------------~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSl  201 (305)
T d1blxa_         171 -------------------------------------------------ALTSVVVTLWYRAPEVLLQSSYATPVDLWSV  201 (305)
T ss_dssp             -------------------------------------------------GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHH
T ss_pred             -------------------------------------------------CCCCCCCCHHHCCCCHHCCCCCCHHEHHHCH
T ss_conf             -------------------------------------------------5777654851148310017988811100032


Q ss_pred             HHHHHHHHC---CCCCCCHHHHHHHHHCCC--------------------------CCCHHHHCCCHHHHHHHHHCCCCC
Q ss_conf             899999732---899994346776753037--------------------------899022215903599999715999
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHR--------------------------VLPPQLLLKFPKEASFCLWLLHPE  309 (886)
Q Consensus       259 Gvil~ell~---pf~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~li~~~L~~d  309 (886)
                      ||++|||++   ||....... .+..+...                          ..+......++.+.+|+.+||.+|
T Consensus       202 G~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~d  280 (305)
T d1blxa_         202 GCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFN  280 (305)
T ss_dssp             HHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHCCCCHHCCCCCCCCHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf             899999987879989989899-9999998407996110532111103330223456454404458999999999987489


Q ss_pred             CCCCCCHHHHHCCCCCCCCC
Q ss_conf             99998988886198877986
Q 002736          310 PSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       310 P~~Rpt~~eil~h~~~~~~~  329 (886)
                      |.+|||+.|+|+||||++..
T Consensus       281 P~~R~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         281 PAKRISAYSALSHPYFQDLE  300 (305)
T ss_dssp             TTTSCCHHHHHTSGGGTTCC
T ss_pred             HHHCCCHHHHHCCHHHCCCH
T ss_conf             66791899996696340752

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-42  Score=276.18  Aligned_cols=205  Identities=14%  Similarity=0.169  Sum_probs=164.3

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             5734420465456789977633443358962999851-785234450499998686899999999999999510147042
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      ++...+.+.+|+|++.+++ +|.   ..+.++++||| .|++|.+++......+++.+++.|++||+.||.|||++||+|
T Consensus        76 ~E~~~l~~l~HpnIv~l~g-~~~---~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiH  151 (299)
T d1jpaa_          76 SEASIMGQFDHPNVIHLEG-VVT---KSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVH  151 (299)
T ss_dssp             HHHHHHTTCCCTTBCCEEE-EEC---SSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHCCCCCCCCEEE-EEE---ECCEEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999998579988861899-996---288779999722798530021045679999999999999999889885279835


Q ss_pred             CCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             25687604532488534530776679999963112222234446889999730333321011234434568888535563
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||++.++.+|++|||+++...........                                            
T Consensus       152 rDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~--------------------------------------------  187 (299)
T d1jpaa_         152 RDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTY--------------------------------------------  187 (299)
T ss_dssp             SCCCGGGEEECTTCCEEECCC-----------------------------------------------------------
T ss_pred             CCCCCCEEEECCCCCEEECCCCCCEECCCCCCCCEE--------------------------------------------
T ss_conf             761504489889991998884431575677776536--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             34467766763211257554444444443000002378988503320246620035132799988646510188999997
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~el  265 (886)
                                                               .......||+.|+|||.+.+..|+.++|||||||+||||
T Consensus       188 -----------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el  226 (299)
T d1jpaa_         188 -----------------------------------------TSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEV  226 (299)
T ss_dssp             -------------------------------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------EECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             -----------------------------------------502566688300387888369978612144535789999


Q ss_pred             HC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             32----899994346776753037899022215903599999715999999989888861
Q 002736          266 FC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       266 l~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ++    ||... .....+..+.....++.+...++.+.+|+.+||..||.+|||+.|+++
T Consensus       227 ~t~g~~Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~  285 (299)
T d1jpaa_         227 MSYGERPYWDM-TNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVN  285 (299)
T ss_dssp             HTTSCCTTTTC-CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             86799999999-999999999737889997422699999999975879768929999999

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-42  Score=276.62  Aligned_cols=210  Identities=19%  Similarity=0.246  Sum_probs=164.8

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .+++|..  .+...+|+|++.+++ +++   ..+.+|++||| .|++|.++|...+..+++.+++.|++||+.||.|||+
T Consensus        47 ~~~~Ei~--il~~l~HpnIv~~~~-~~~---~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~  120 (321)
T d1tkia_          47 LVKKEIS--ILNIARHRNILHLHE-SFE---SMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHS  120 (321)
T ss_dssp             HHHHHHH--HHHHSCCTTBCCEEE-EEE---ETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHCCCCCCCEEEE-EEE---ECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999--998579979890989-998---8998899995389980889987538999999999999999999999987


Q ss_pred             CCEEECCCCCCCEEECCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             470422568760453248--853453077667999996311222223444688999973033332101123443456888
Q 002736          101 QGIVVHNVRPSCFVMSSF--NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT  178 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~--~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (886)
                      +||+||||||+|||++..  ..+|++|||+++......                                          
T Consensus       121 ~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~------------------------------------------  158 (321)
T d1tkia_         121 HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD------------------------------------------  158 (321)
T ss_dssp             TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC------------------------------------------
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEECCCCHHHCCCCCC------------------------------------------
T ss_conf             69975135544434437885189976441110034677------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHH
Q ss_conf             85355633446776676321125755444444444300000237898850332024662003513279998864651018
Q 002736          179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRL  258 (886)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSl  258 (886)
                                                                       ......+++.|+|||++.+..|+.++|||||
T Consensus       159 -------------------------------------------------~~~~~~~t~~y~ape~~~~~~~~~~~DiWSl  189 (321)
T d1tkia_         159 -------------------------------------------------NFRLLFTAPEYYAPEVHQHDVVSTATDMWSL  189 (321)
T ss_dssp             -------------------------------------------------EEEEEESCGGGSCHHHHTTCEECHHHHHHHH
T ss_pred             -------------------------------------------------CCCCCCCCCCCCCCHHCCCCCCCCHHHCCCH
T ss_conf             -------------------------------------------------5321223322234021048777840113027


Q ss_pred             HHHHHHHHC---CCCCCCHHHHHHHHHCCCC-CC-HHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf             899999732---8999943467767530378-99-0222159035999997159999999898888619887798
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHRV-LP-PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       259 Gvil~ell~---pf~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~  328 (886)
                      ||++|||++   ||................. ++ +.+...++++.+|+.+||..||.+|||+.|+++||||...
T Consensus       190 Gvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         190 GTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             HHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCC
T ss_conf             999999982899999989999999998389998802236789999999999866996689099999639965667

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-42  Score=276.75  Aligned_cols=206  Identities=18%  Similarity=0.150  Sum_probs=167.2

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3222235734420465456789977633443358962999851-78523445049-999868689999999999999951
Q 002736           21 FELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDK-PKRSVDVYECLHIFRQIVEIVYAA   98 (886)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~l   98 (886)
                      ..|++|..  .+.+.+|+|++.+++ +|.   ..+.++++||| .+|+|.++|.+ ....+++..++.|+.||+.||.||
T Consensus        58 ~~~~~E~~--il~~l~HpnIv~~~~-~~~---~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yL  131 (287)
T d1opja_          58 EEFLKEAA--VMKEIKHPNLVQLLG-VCT---REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYL  131 (287)
T ss_dssp             HHHHHHHH--HHHHCCCTTBCCEEE-EEC---SSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHCCCCCEECCCC-CEE---ECCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999--998679998826775-274---578547876314676067775303554157999999999999978889


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             01470422568760453248853453077667999996311222223444688999973033332101123443456888
Q 002736           99 HSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT  178 (886)
Q Consensus        99 Hs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (886)
                      |++||+||||||+|||++.++.+|++|||+++....+...                                        
T Consensus       132 H~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~----------------------------------------  171 (287)
T d1opja_         132 EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT----------------------------------------  171 (287)
T ss_dssp             HHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSE----------------------------------------
T ss_pred             HHCCCCCCCCCCCEEEECCCCCEEECCCCCEEECCCCCCE----------------------------------------
T ss_conf             8789305760457689989992898324454653788722----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHH
Q ss_conf             85355633446776676321125755444444444300000237898850332024662003513279998864651018
Q 002736          179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRL  258 (886)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSl  258 (886)
                                                                       ......|+..|+|||++.+..|+.++|||||
T Consensus       172 -------------------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~  202 (287)
T d1opja_         172 -------------------------------------------------AHAGAKFPIKWTAPESLAYNKFSIKSDVWAF  202 (287)
T ss_dssp             -------------------------------------------------EETTEEECGGGCCHHHHHHCCCSHHHHHHHH
T ss_pred             -------------------------------------------------EECCCCCCCCCCCHHHHCCCCCCCHHHHHHH
T ss_conf             -------------------------------------------------1035566546669278727999810430217


Q ss_pred             HHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             899999732---899994346776753037899022215903599999715999999989888861
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       259 Gvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ||++|||++   |++...........+.....++.+...++.+.+|+.+||..||.+|||+.++++
T Consensus       203 Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         203 GVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             HHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             899999986799887742599999998558888887433099999999975779768939999999

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-42  Score=276.18  Aligned_cols=206  Identities=17%  Similarity=0.199  Sum_probs=160.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|++|  ...+.+.+|+|++.+++ +|.    .+.++++||| .|++|.++|......+++.+++.|+.||+.||.|||+
T Consensus        50 ~~~~E--~~~l~~l~HpnIv~~~~-~~~----~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~  122 (276)
T d1uwha_          50 AFKNE--VGVLRKTRHVNILLFMG-YST----APQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA  122 (276)
T ss_dssp             HHHHH--HHHHTTCCCTTBCCEEE-EEC----SSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHCCCCCEEEEEE-EEE----CCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999--99998479987864567-971----558999996589988899985235789999999999999999888750


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             47042256876045324885345307766799999631122222344468899997303333210112344345688885
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (886)
                      +||+||||||+|||++.++.+|++|||+++........                                          
T Consensus       123 ~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~------------------------------------------  160 (276)
T d1uwha_         123 KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGS------------------------------------------  160 (276)
T ss_dssp             TTCCCSCCCGGGEEEETTSSEEECCCCCSCC-------------------------------------------------
T ss_pred             CCEECCCCCHHHEEECCCCCEEECCCCCEEECCCCCCC------------------------------------------
T ss_conf             99951614789979818997887500221333556776------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCC---CCCCCCCCCCH
Q ss_conf             355633446776676321125755444444444300000237898850332024662003513279---99886465101
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG---APVSCASDIYR  257 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~---~~~t~~sDIwS  257 (886)
                                                                    .......||+.|+|||++.+   .+|+.++||||
T Consensus       161 ----------------------------------------------~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS  194 (276)
T d1uwha_         161 ----------------------------------------------HQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYA  194 (276)
T ss_dssp             ---------------------------------------------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHH
T ss_pred             ----------------------------------------------CCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHH
T ss_conf             ----------------------------------------------3125665574317999995056899995315163


Q ss_pred             HHHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHH----HHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             8899999732---89999434677675303789902----22159035999997159999999898888619
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQ----LLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       258 lGvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      |||+||||++   ||............+.....++.    ....++.+.+|+.+||..||.+|||+.+++++
T Consensus       195 ~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         195 FGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             HHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             599999999788998998969999999965888986000365554999999999758897689299999999

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=275.53  Aligned_cols=207  Identities=14%  Similarity=0.142  Sum_probs=166.8

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             3222235734420465456789977633443358962999851-785234450499998686899999999999999510
Q 002736           21 FELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH   99 (886)
                      ..|.+|..  .+...+|+|++.+++ +|.+   .+.++++||| .+++|.+++......+++..++.|+.||+.||.|+|
T Consensus        45 ~~~~~E~~--~l~~l~HpnIv~~~g-~~~~---~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH  118 (263)
T d1sm2a_          45 EDFIEEAE--VMMKLSHPKLVQLYG-VCLE---QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE  118 (263)
T ss_dssp             HHHHHHHH--HHHHCCCTTBCCEEE-EECS---SSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHCCCCCCCCCCC-EECC---CCCEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999--999668997565352-4315---99337999836999189975201347889999999999999877653


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             14704225687604532488534530776679999963112222234446889999730333321011234434568888
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                      +++|+||||||+|||++.++.+|++|||+++........                                         
T Consensus       119 ~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~-----------------------------------------  157 (263)
T d1sm2a_         119 EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT-----------------------------------------  157 (263)
T ss_dssp             HTTCCCTTCSGGGEEECGGGCEEECSCC----------------------------------------------------
T ss_pred             CCCEEECCCCHHHEEECCCCCEEECCCCHHEECCCCCCE-----------------------------------------
T ss_conf             164310443153266668877686553210023688733-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             53556334467766763211257554444444443000002378988503320246620035132799988646510188
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlG  259 (886)
                                                                      ......||..|+|||++.+..|+.++||||||
T Consensus       158 ------------------------------------------------~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~G  189 (263)
T d1sm2a_         158 ------------------------------------------------SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFG  189 (263)
T ss_dssp             -------------------------------------------------------CTTSCCHHHHTTCCCCHHHHHHHHH
T ss_pred             ------------------------------------------------EECCEECCCCCCCHHHHCCCCCCCHHHHCCHH
T ss_conf             ------------------------------------------------50430017666785786079998403321059


Q ss_pred             HHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             99999732---8999943467767530378990222159035999997159999999898888619
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       260 vil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      |++|||+|   |++...........+.....++.+...++.+.+++.+||..||.+|||+++++++
T Consensus       190 vil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         190 VLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             HHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             999999878988877899999999998068889954367999999999765797689199999999

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.5e-41  Score=270.59  Aligned_cols=197  Identities=16%  Similarity=0.196  Sum_probs=159.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEE
Q ss_conf             5456789977633443358962999851-785234450499998686899999999999999510147042256876045
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFV  114 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~Nil  114 (886)
                      .|+|++.+++ ++.   ..+.++++||| .|++|.++|+.. ..+++.+++.++.||+.||.|||++||+||||||+|||
T Consensus        68 ~hpnIv~~~~-~~~---~~~~~~ivmE~~~~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nil  142 (277)
T d1phka_          68 GHPNIIQLKD-TYE---TNTFFFLVFDLMKKGELFDYLTEK-VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENIL  142 (277)
T ss_dssp             TCTTBCCEEE-EEE---CSSEEEEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             CCCCEEEEEE-ECC---CCCCEEEEEECCCCCHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             7997479976-214---676059999768986689999865-99999999999999999999998759943234625489


Q ss_pred             ECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32488534530776679999963112222234446889999730333321011234434568888535563344677667
Q 002736          115 MSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYG  194 (886)
Q Consensus       115 l~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (886)
                      ++.++.+|++|||+++.+....                                                          
T Consensus       143 l~~~~~~kl~DFG~a~~~~~~~----------------------------------------------------------  164 (277)
T d1phka_         143 LDDDMNIKLTDFGFSCQLDPGE----------------------------------------------------------  164 (277)
T ss_dssp             ECTTCCEEECCCTTCEECCTTC----------------------------------------------------------
T ss_pred             ECCCCCEEECCCHHEEECCCCC----------------------------------------------------------
T ss_conf             8689983871240316726887----------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCC------CCCCCCCCCCHHHHHHHHHHC-
Q ss_conf             6321125755444444444300000237898850332024662003513279------998864651018899999732-
Q 002736          195 THVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG------APVSCASDIYRLGVLLFELFC-  267 (886)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~------~~~t~~sDIwSlGvil~ell~-  267 (886)
                                                       ......||+.|+|||.+.+      ..++.++||||+||+||||++ 
T Consensus       165 ---------------------------------~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g  211 (277)
T d1phka_         165 ---------------------------------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG  211 (277)
T ss_dssp             ---------------------------------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------CEEEEECCCCCCCHHHHHCCCCCCCCCCCCHHEECCCCHHHHHHCCC
T ss_conf             ---------------------------------21345246788898886053445678899233185656023103228


Q ss_pred             --CCCCCCHHHHHHHHHCCC--CCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf             --899994346776753037--8990222159035999997159999999898888619887798
Q 002736          268 --PFSTGEEKTRTMSSLRHR--VLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEP  328 (886)
Q Consensus       268 --pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~  328 (886)
                        ||............+...  ...+.+...++++.+|+.+||.++|.+||++.|+|+||||++.
T Consensus       212 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~~  276 (277)
T d1phka_         212 SPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQY  276 (277)
T ss_dssp             SCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTT
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHHHH
T ss_conf             88988999999999998189888985434689999999999765896689199999739787975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-36  Score=241.19  Aligned_cols=302  Identities=18%  Similarity=0.264  Sum_probs=232.3

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEC
Q ss_conf             00453346247864137448899205733589998899999689998999968991999975864475665333348723
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .++|..||.+++|+..+.+....+     .+|.+.|++++|+++ .+|++|+.|+.|++|+........     ......
T Consensus        26 l~tgs~Dg~i~vWd~~~~~~~~~l-----~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~-----~~~~~~   94 (355)
T d1nexb2          26 VITGADDKMIRVYDSINKKFLLQL-----SGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH-----VFEGHN   94 (355)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEE-----ECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEE-----EECCCS
T ss_pred             EEEEECCCEEEEEECCCCCEEEEE-----ECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCC-----CCCCCC
T ss_conf             999918990999989999399999-----789998899998699-999999645244321111111111-----110011


Q ss_pred             CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEE-----------------------ECCCCCCEEEEEECCCC
Q ss_conf             7898016998079998699962899199998788627888-----------------------12358749999981399
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTE-----------------------MREHERRVWSIDFSSAD  672 (886)
Q Consensus       616 ~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~-----------------------~~~h~~~V~~i~~sp~~  672 (886)
                      +........+.+ +...+++++.|+.|++||+.+......                       ...|...+...  .+ +
T Consensus        95 ~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~  170 (355)
T d1nexb2          95 STVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-H  170 (355)
T ss_dssp             SCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEE--EE-E
T ss_pred             CCCCCCCCCCCC-CCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCC--CC-C
T ss_conf             111111111112-3220455438886899985677300124652000100000112340121011002221000--02-5


Q ss_pred             CCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEE-CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEEC
Q ss_conf             99899981899499994750344420473034453-27986999981899968999938990999965899834699912
Q 002736          673 PTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIG  751 (886)
Q Consensus       673 ~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~  751 (886)
                      +..++++..|+.+++||+.+       ...+.... ....+.++.|+|. +..+++++.|+.|++||++++. .+..+.+
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~  241 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQ-------MKCLYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGE-LMYTLQG  241 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTCC-EEEEECC
T ss_pred             CCEEEEECCCCEEEEEECCC-------CCCEEEEECCCCCCCCCCCCCC-CEEEECCCCCCEEEEEECCCCC-CCCCCCC
T ss_conf             63344211442044430131-------1000110001233211111121-0021012456368763012211-1111111


Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEE-EEECCCCEEEEECCCCCEEEEECC
Q ss_conf             7998679996499989999789949999479997665698813860678853499-991399999998499929997139
Q 002736          752 HNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFV-GLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       752 h~~~V~~i~f~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v-~~sp~~~~lasgs~dg~i~iwd~~  830 (886)
                      |...|.++.|+ ++++++++.||.|++||+++.        ...+..|...+..+ .+++++.++++|+ |+.|++||+.
T Consensus       242 h~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~  311 (355)
T d1nexb2         242 HTALVGLLRLS-DKFLVSAAADGSIRGWDANDY--------SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  311 (355)
T ss_dssp             CSSCCCEEEEC-SSEEEEECTTSEEEEEETTTC--------CEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             CCCCCCCCCCC-CCEEEEEECCCCCCCCCCCCC--------CEECCCCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECC
T ss_conf             11111111232-100333201111111111111--------1000124688229999849998999980-9979999999


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEE
Q ss_conf             9986101035799999988556679959999990699959999847997999970
Q 002736          831 FPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~iw~l  885 (886)
                      +++.+...            ..+|...|.+++|+|+ . ++++++.||.+++|.+
T Consensus       312 tg~~~~~~------------~~~~~~~V~~v~~~~~-~-~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         312 SGKLVHAN------------ILKDADQIWSVNFKGK-T-LVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TCCBCCSC------------TTTTCSEEEEEEEETT-E-EEEEEESSSCEEEEEE
T ss_pred             CCCEEEEE------------ECCCCCCEEEEEECCC-E-EEEEEECCCCEEEEEE
T ss_conf             99798888------------4589998999998399-1-9999989890999999

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-36  Score=242.11  Aligned_cols=266  Identities=23%  Similarity=0.361  Sum_probs=233.7

Q ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             10045334624786413744889920573358999889999968999899996899199997586447566533334872
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       535 ~~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  614 (886)
                      ..+++..||.+++|++.+.+....+     .+|.+.|.++.|++++.++++++.++.+.+|+.....       ......
T Consensus        31 ~l~s~s~Dg~i~iWd~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   98 (317)
T d1vyhc1          31 VMVSASEDATIKVWDYETGDFERTL-----KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-------CIRTMH   98 (317)
T ss_dssp             EEEEEESSSCEEEEETTTCCCCEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-------EEECCC
T ss_pred             EEEEEECCCEEEEEECCCCCEEEEE-----ECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCC
T ss_conf             9999938992999989999799999-----5788867777630111101111111110111001111-------111100


Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHH
Q ss_conf             37898016998079998699962899199998788627888123587499999813999989998189949999475034
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI  694 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~  694 (886)
                      .+...+.++.|++ +++.+++++.|+.+++||+.+++.+..+..|...+.++.|+| ++.+|++++.|+.|++|++..  
T Consensus        99 ~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~--  174 (317)
T d1vyhc1          99 GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT--  174 (317)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT--
T ss_pred             CCCCCCEEEECCC-CCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCC-CCCEEEEEECCCEEEEEEECC--
T ss_conf             0000000000169-985577652675235751144303468716777630000166-799999992798299975125--


Q ss_pred             HHHCCCCEEEEEE-CCCCEEEEEEECCC-------------------CCEEEEEECCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf             4420473034453-27986999981899-------------------968999938990999965899834699912799
Q 002736          695 LLLHLGVSIGTIK-TKANVCCVQFPLDS-------------------GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK  754 (886)
Q Consensus       695 ~~~~~~~~~~~~~-~~~~v~~i~~sp~~-------------------~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~  754 (886)
                           ......+. +...+.+++|+|+.                   +..+++|+.|+.|++||+++++ ++..+.+|..
T Consensus       175 -----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~  248 (317)
T d1vyhc1         175 -----KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDN  248 (317)
T ss_dssp             -----CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSS
T ss_pred             -----CEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEECCCC
T ss_conf             -----4034788247787337998632564111034563034302588614751699789998889996-8899968899


Q ss_pred             CEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             86799964-999899997899499994799976656988138606788534999913999999984999299971
Q 002736          755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       755 ~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd  828 (886)
                      .|.++.|+ ++.+|++|+.||.|++||+.++      +++.++.+|...|++++|+|++++|++|+.|+.|+|||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTS------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEECCCC------CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             8799998799999999979894999999999------19999928999889999949999999992899499829

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-41  Score=273.74  Aligned_cols=205  Identities=13%  Similarity=0.118  Sum_probs=163.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|++|.  ..+..-+|+|++.+++ +|.+    +.++++||| .|++|.+++......+++.+++.++.||+.||.|||+
T Consensus        55 ~~~~E~--~il~~l~HpnIv~l~g-~~~~----~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~  127 (285)
T d1u59a_          55 EMMREA--QIMHQLDNPYIVRLIG-VCQA----EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE  127 (285)
T ss_dssp             HHHHHH--HHHHHCCCTTBCCEEE-EEES----SSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHCCCCCEEEEEE-EECC----CEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999--9998679988806865-6036----80799998078996899752125699999999999999998789986


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             47042256876045324885345307766799999631122222344468899997303333210112344345688885
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (886)
                      +||+||||||+|||++.++.+|++|||+++..........                                        
T Consensus       128 ~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~----------------------------------------  167 (285)
T d1u59a_         128 KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYT----------------------------------------  167 (285)
T ss_dssp             TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEEC----------------------------------------
T ss_pred             CCEECCCCCHHHEEECCCCCEEECCCHHHHCCCCCCCCCC----------------------------------------
T ss_conf             8810576764660454688542033134211554343211----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             35563344677667632112575544444444430000023789885033202466200351327999886465101889
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGv  260 (886)
                                                                     ......||+.|+|||++.+..++.++|||||||
T Consensus       168 -----------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv  200 (285)
T d1u59a_         168 -----------------------------------------------ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGV  200 (285)
T ss_dssp             -----------------------------------------------CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHH
T ss_pred             -----------------------------------------------CCCCCCCCCCCCCHHHHHCCCCCCCCHHHCCHH
T ss_conf             -----------------------------------------------356211374335868872799995412322017


Q ss_pred             HHHHHHC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             9999732----899994346776753037899022215903599999715999999989888861
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       261 il~ell~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ++|||+|    ||... .....+..+.....++.+...++++.+|+.+||..+|.+||++.++++
T Consensus       201 ~l~E~lt~G~~Pf~~~-~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~  264 (285)
T d1u59a_         201 TMWEALSYGQKPYKKM-KGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQ  264 (285)
T ss_dssp             HHHHHHTTSCCTTTTC-CTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             8999993899999997-999999999818999999767899999999975779768909999999

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-41  Score=273.29  Aligned_cols=196  Identities=19%  Similarity=0.224  Sum_probs=155.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCC---------------CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             5456789977633443358962999851-785234450499---------------998686899999999999999510
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~---------------~~~~~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|++++.+++ +|..  ....++++||| .|++|.++|...               ...+++.+++.++.||+.||.|||
T Consensus        75 ~h~~iv~~~~-~~~~--~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH  151 (299)
T d1ywna1          75 HHLNVVNLLG-ACTK--PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA  151 (299)
T ss_dssp             CCTTBCCEEE-EECS--TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEE-EECC--CCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9984997411-5404--797579999845899299999853666665322202332146899999999999999999887


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             14704225687604532488534530776679999963112222234446889999730333321011234434568888
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.+|++|||+++........                                         
T Consensus       152 ~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~-----------------------------------------  190 (299)
T d1ywna1         152 SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY-----------------------------------------  190 (299)
T ss_dssp             HTTCCCSCCCGGGEEECGGGCEEECC------CCSCTTS-----------------------------------------
T ss_pred             HCCCCCCCCCCCCEEECCCCCEEECCCCCHHHCCCCCCC-----------------------------------------
T ss_conf             379717867731065779982898457520011356652-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             53556334467766763211257554444444443000002378988503320246620035132799988646510188
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlG  259 (886)
                                                                     .......||+.|+|||++.+..|+.++||||||
T Consensus       191 -----------------------------------------------~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~G  223 (299)
T d1ywna1         191 -----------------------------------------------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG  223 (299)
T ss_dssp             -----------------------------------------------CCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHH
T ss_pred             -----------------------------------------------CCCCCEEECCCCCCHHHHHCCCCCCCCCEEEHH
T ss_conf             -----------------------------------------------224751667210203686468899663221367


Q ss_pred             HHHHHHHC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             99999732----8999943467767530378990222159035999997159999999898888619
Q 002736          260 VLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       260 vil~ell~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      |++|||++    ||............+.....++.+...++.+.+++.+||..||.+|||+.|+++|
T Consensus       224 vil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         224 VLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             HHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             8999998688999989998999999996389888886578999999999767796679199999999

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-41  Score=271.38  Aligned_cols=215  Identities=14%  Similarity=0.132  Sum_probs=159.6

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             7344204654567899776334433--58962999851785234450499998686899999999999999510147042
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEA--AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      +...+..-+|++++.+++ ++..+.  ....+|++|++.|++|.+++..  +.+++..++.+++||+.||.|||++||+|
T Consensus        56 Ei~il~~l~hp~iv~~~~-~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~--~~l~~~~i~~i~~qil~al~yLH~~~iiH  132 (345)
T d1pmea_          56 EIKILLRFRHENIIGIND-IIRAPTIEQMKDVYLVTHLMGADLYKLLKT--QHLSNDHICYFLYQILRGLKYIHSANVLH  132 (345)
T ss_dssp             HHHHHHHCCCTTBCCCCE-EECCSSTTTCCCEEEEEECCCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHCCCCCCCCEEE-EEEECCCCCCCEEEEEEEECCCCHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999768989885888-995056455414999996259865664405--89999999999999999999999789867


Q ss_pred             CCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             25687604532488534530776679999963112222234446889999730333321011234434568888535563
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||++.++.+|++|||+++........                                               
T Consensus       133 RDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~-----------------------------------------------  165 (345)
T d1pmea_         133 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDH-----------------------------------------------  165 (345)
T ss_dssp             CCCCGGGEEECTTCCEEECCCTTCEECCGGGCB-----------------------------------------------
T ss_pred             CCCCCCEEEECCCCCEEECCCCCEEECCCCCCC-----------------------------------------------
T ss_conf             778764378879997787545705650477764-----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCC-CCCCCCCCCCHHHHHHHH
Q ss_conf             3446776676321125755444444444300000237898850332024662003513279-998864651018899999
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAG-APVSCASDIYRLGVLLFE  264 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-~~~t~~sDIwSlGvil~e  264 (886)
                                                              .......+|++.|+|||++.. ..++.++||||+||++||
T Consensus       166 ----------------------------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~e  205 (345)
T d1pmea_         166 ----------------------------------------TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE  205 (345)
T ss_dssp             ----------------------------------------CCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CEEECCCCCCCEECHHHHHHCCCCCCCHHHHHCCCCEEHH
T ss_conf             ----------------------------------------1010110265200038786047888741010046701337


Q ss_pred             HHC---CCCCCCHHHHHHHHHCCC--------------------------CC---CHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf             732---899994346776753037--------------------------89---9022215903599999715999999
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHR--------------------------VL---PPQLLLKFPKEASFCLWLLHPEPSG  312 (886)
Q Consensus       265 ll~---pf~~~~~~~~~~~~~~~~--------------------------~~---~~~~~~~~~~~~~li~~~L~~dP~~  312 (886)
                      |++   ||................                          ..   ...+...++++.+|+.+||..||.+
T Consensus       206 ml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  285 (345)
T d1pmea_         206 MLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHK  285 (345)
T ss_dssp             HHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTT
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHH
T ss_conf             76697997888889999987652069975664234332222024467755778777837899999999999976489567


Q ss_pred             CCCHHHHHCCCCCCCCCCCH
Q ss_conf             98988886198877986742
Q 002736          313 RPKMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       313 Rpt~~eil~h~~~~~~~~~~  332 (886)
                      |||+.|+|+||||.....+.
T Consensus       286 R~ta~e~L~hpf~~~~~~~~  305 (345)
T d1pmea_         286 RIEVEQALAHPYLEQYYDPS  305 (345)
T ss_dssp             SCCHHHHHTSGGGTTTCCGG
T ss_pred             CCCHHHHHCCHHHCCCCCCC
T ss_conf             90899986198655588976

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=275.19  Aligned_cols=204  Identities=14%  Similarity=0.116  Sum_probs=161.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|.+|.  ..+.+.+|+|++.+++ +|.+    +.++++||| .|++|.+++.+. ..+++.+++.|+.||+.||.|||+
T Consensus        54 ~~~~E~--~il~~l~HpnIv~~~g-~~~~----~~~~lvmE~~~~g~L~~~l~~~-~~l~~~~~~~i~~qi~~gl~ylH~  125 (277)
T d1xbba_          54 ELLAEA--NVMQQLDNPYIVRMIG-ICEA----ESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEE  125 (277)
T ss_dssp             HHHHHH--HHHHTCCCTTBCCEEE-EEES----SSEEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHCCCCCCCEEEE-EECC----CCEEEEEECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999--9998679989852777-7505----9779999747889689997522-578999999999999999766874


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             47042256876045324885345307766799999631122222344468899997303333210112344345688885
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (886)
                      +||+||||||+|||++..+.+|++|||+++.........                                         
T Consensus       126 ~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~-----------------------------------------  164 (277)
T d1xbba_         126 SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY-----------------------------------------  164 (277)
T ss_dssp             TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE-----------------------------------------
T ss_pred             CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCC-----------------------------------------
T ss_conf             795567776113102356751234134533134323443-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             35563344677667632112575544444444430000023789885033202466200351327999886465101889
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGv  260 (886)
                                                                    .......||+.|+|||++.+..|+.++|||||||
T Consensus       165 ----------------------------------------------~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv  198 (277)
T d1xbba_         165 ----------------------------------------------KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGV  198 (277)
T ss_dssp             ----------------------------------------------EC----CCCGGGCCHHHHHHCEEEHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCCCCCCCCEECCCHHHCCCCCCCHHHHCCCHH
T ss_conf             ----------------------------------------------2244567784203916653799984344303403


Q ss_pred             HHHHHHC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             9999732----899994346776753037899022215903599999715999999989888861
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       261 il~ell~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ++|||++    ||... ........+.....++.+...++.+.+|+.+||..||.+|||+.+++.
T Consensus       199 ~l~ellt~g~~Pf~~~-~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~  262 (277)
T d1xbba_         199 LMWEAFSYGQKPYRGM-KGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  262 (277)
T ss_dssp             HHHHHHTTTCCSSTTC-CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             1328965899999998-999999999828999998656799999999975889768909899999

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-40  Score=267.40  Aligned_cols=209  Identities=15%  Similarity=0.244  Sum_probs=160.0

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCC---CCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             7344204654567899776334433---5896299985178523445049999868689999999999999951014704
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      +...+.+.+|++++.+++ ++..+.   ....++++|||.|.+|..+++.  ..+++..++.+++||+.||.|||++||+
T Consensus        67 Ei~il~~l~hpniv~l~~-~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~Ii  143 (346)
T d1cm8a_          67 ELRLLKHMRHENVIGLLD-VFTPDETLDDFTDFYLVMPFMGTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIHAAGII  143 (346)
T ss_dssp             HHHHHHHCCBTTBCCCSE-EECSCSSTTTCCCCEEEEECCSEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHCCCCCEEEEEE-EECCCCCCCCCCEEEEEEECCCCCHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999998668987547999-8635765555415999984055218999874--0226999999999999999998737876


Q ss_pred             ECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22568760453248853453077667999996311222223444688999973033332101123443456888853556
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (886)
                      ||||||+|||++.++.+|++|||+++.....                                                 
T Consensus       144 HrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~-------------------------------------------------  174 (346)
T d1cm8a_         144 HRDLKPGNLAVNEDCELKILDFGLARQADSE-------------------------------------------------  174 (346)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEECCSS-------------------------------------------------
T ss_pred             CCCCCCCHHHCCCCCCCCCCCCCCEECCCCC-------------------------------------------------
T ss_conf             4566851111210012211343102206876-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCC-CCCCCCCCCHHHHHHH
Q ss_conf             334467766763211257554444444443000002378988503320246620035132799-9886465101889999
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVLLF  263 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~t~~sDIwSlGvil~  263 (886)
                                                                  .+...||++|+|||++.+. .++.++|||||||++|
T Consensus       175 --------------------------------------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~  210 (346)
T d1cm8a_         175 --------------------------------------------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMA  210 (346)
T ss_dssp             --------------------------------------------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHH
T ss_pred             --------------------------------------------CCCCCCCCCCCCHHHHCCCCCCCCCCHHHCCHHHHH
T ss_conf             --------------------------------------------310245533358899817878996501030038999


Q ss_pred             HHHC---CCCCCCHHHHHHHHHCC-----------------------------CCCCHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             9732---89999434677675303-----------------------------789902221590359999971599999
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRH-----------------------------RVLPPQLLLKFPKEASFCLWLLHPEPS  311 (886)
Q Consensus       264 ell~---pf~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~li~~~L~~dP~  311 (886)
                      ||++   ||...............                             ..+...+...++.+.+|+.+||..||.
T Consensus       211 ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~  290 (346)
T d1cm8a_         211 EMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAE  290 (346)
T ss_dssp             HHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTT
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHH
T ss_conf             99978699888976899999985037884888865300034433115786665566775568999999999997729955


Q ss_pred             CCCCHHHHHCCCCCCCCCCCH
Q ss_conf             998988886198877986742
Q 002736          312 GRPKMGELLQSEFLNEPRDSM  332 (886)
Q Consensus       312 ~Rpt~~eil~h~~~~~~~~~~  332 (886)
                      +|||+.|+|+||||+......
T Consensus       291 ~R~ta~eiL~Hp~f~~~~~~~  311 (346)
T d1cm8a_         291 QRVTAGEALAHPYFESLHDTE  311 (346)
T ss_dssp             TSCCHHHHHHSGGGTTTC---
T ss_pred             HCCCHHHHHCCHHHCCCCCCC
T ss_conf             792999996396237587766

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=274.14  Aligned_cols=204  Identities=18%  Similarity=0.243  Sum_probs=155.4

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CC-CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             22235734420465456789977633443358962999851-78-52344504999986868999999999999995101
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GD-VSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g-~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      +..|...+...+..|+|++.+++ ++.   ..+.++++||+ .+ ++|.+++.+. ..+++.+++.+++||+.||.|||+
T Consensus        54 ~~~E~~il~~l~~~h~nIv~~~~-~~~---~~~~~~lv~e~~~~~~~l~~~~~~~-~~l~e~~~~~~~~qi~~al~~lH~  128 (273)
T d1xwsa_          54 VPMEVVLLKKVSSGFSGVIRLLD-WFE---RPDSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLEAVRHCHN  128 (273)
T ss_dssp             EEHHHHHHHHHCSSSCSBCCEEE-EEE---CSSEEEEEEECCSSEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEE-EEE---ECCEEEEEEEECCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999974358988127999-983---0996899998336862289998615-899999999999999999999987


Q ss_pred             CCEEECCCCCCCEEECCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             470422568760453248-8534530776679999963112222234446889999730333321011234434568888
Q 002736          101 QGIVVHNVRPSCFVMSSF-NHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~-~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                      +||+||||||+|||++.+ +.+|++|||+++.....                                            
T Consensus       129 ~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~--------------------------------------------  164 (273)
T d1xwsa_         129 CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDT--------------------------------------------  164 (273)
T ss_dssp             TTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSS--------------------------------------------
T ss_pred             CCCCCCCCCCCCEEEECCCCEEEECCCCCCEECCCC--------------------------------------------
T ss_conf             797556676111477447884897754653532444--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCC-CCCCCCCHH
Q ss_conf             5355633446776676321125755444444444300000237898850332024662003513279998-864651018
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPV-SCASDIYRL  258 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~-t~~sDIwSl  258 (886)
                                                                      ..+...||+.|+|||++.+..+ +.++|||||
T Consensus       165 ------------------------------------------------~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSl  196 (273)
T d1xwsa_         165 ------------------------------------------------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSL  196 (273)
T ss_dssp             ------------------------------------------------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHH
T ss_pred             ------------------------------------------------CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             ------------------------------------------------55665658774799998489978865332554


Q ss_pred             HHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf             899999732---8999943467767530378990222159035999997159999999898888619887798674
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       259 Gvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~~~  331 (886)
                      ||++|||++   ||....   ..   .....  ......++++.+|+.+||.+||.+|||+.|+++||||+....+
T Consensus       197 Gvilyell~g~~Pf~~~~---~i---~~~~~--~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~~~p  264 (273)
T d1xwsa_         197 GILLYDMVCGDIPFEHDE---EI---IRGQV--FFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLP  264 (273)
T ss_dssp             HHHHHHHHHSSCSCCSHH---HH---HHCCC--CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCCCH
T ss_pred             EEEEHHHHHCCCCCCCCH---HH---HHCCC--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCCCC
T ss_conf             034536756889988736---77---61544--7787799999999999760897589399998539866788788

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=269.03  Aligned_cols=206  Identities=12%  Similarity=0.120  Sum_probs=166.7

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22235734420465456789977633443358962999851-78523445049999868689999999999999951014
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      |.+|.  ..+.+.+|+|++.+++ +|.   +.+.++++||| .+++|.+++......+++.+++.++.||+.||.|||++
T Consensus        56 ~~~E~--~il~~l~H~nIv~~~g-~~~---~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~  129 (283)
T d1mqba_          56 FLGEA--GIMGQFSHHNIIRLEG-VIS---KYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM  129 (283)
T ss_dssp             HHHHH--HHHHTCCCTTBCCEEE-EEC---SSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH--HHHHHCCCCCEEEEEE-EEE---CCCCEEEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999--9998568987832367-783---38803899972135740222102345420899999999999854121212


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++.+|++|||+++........                                           
T Consensus       130 ~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~-------------------------------------------  166 (283)
T d1mqba_         130 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA-------------------------------------------  166 (283)
T ss_dssp             TCCCSCCCGGGEEECTTCCEEECCCCC-----------------------------------------------------
T ss_pred             CCCCCCCCCCEEEECCCCEEEECCCCHHHCCCCCCCC-------------------------------------------
T ss_conf             3425765644278889984998455103003578765-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             55633446776676321125755444444444300000237898850332024662003513279998864651018899
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvi  261 (886)
                                                                  ........||..|+|||++.+..|+.++|||||||+
T Consensus       167 --------------------------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvi  202 (283)
T d1mqba_         167 --------------------------------------------TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIV  202 (283)
T ss_dssp             ---------------------------------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHH
T ss_pred             --------------------------------------------CEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHH
T ss_conf             --------------------------------------------267426777734348888704999973556344898


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             999732---899994346776753037899022215903599999715999999989888861
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       262 l~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      +|||++   |++........+..+.....++.+...++.+.+++.+||..+|.+|||+.++++
T Consensus       203 l~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         203 MWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             HHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             999996798865568999999998635789985045799999999977679768939999999

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-36  Score=242.07  Aligned_cols=280  Identities=14%  Similarity=0.135  Sum_probs=212.2

Q ss_pred             CCCCCCCCEEEEEECCCE--EEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             045334624786413744--889920573358999889999968999899996899199997586447566533334872
Q 002736          537 INPFLEGLCKYLSFSKLR--VKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       537 ~~~~~dg~~~~~~~~~~~--~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  614 (886)
                      +.+..++.+++|+..+.+  ....+     .+|.++|++++|+|++++|++|+.|+.|+||++....     ........
T Consensus        23 a~~~~~~~i~iw~~~~~~~~~~~~l-----~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-----~~~~~~~~   92 (371)
T d1k8kc_          23 AICPNNHEVHIYEKSGNKWVQVHEL-----KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----WKPTLVIL   92 (371)
T ss_dssp             EEECSSSEEEEEEEETTEEEEEEEE-----ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----EEEEEECC
T ss_pred             EEEECCCEEEEEECCCCCEEEEEEE-----CCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC-----CCCCCCCC
T ss_conf             9994889899998889978999995-----5889988899997999999999799939998620332-----11001223


Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCE----EEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf             3789801699807999869996289919999878862----788812358749999981399998999818994999947
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI  690 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~----~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl  690 (886)
                      .|...|.+++|+| +++.+++++.|++|++|++....    .......|...|.+++|+| ++.+|++|+.|++|++|++
T Consensus        93 ~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~  170 (371)
T d1k8kc_          93 RINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSA  170 (371)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred             CCCCCCCCCCCCC-CCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEECCCCCCEEEEEEE
T ss_conf             2211000111111-1211000002576302544203343311100101112221111111-1111000134767999840


Q ss_pred             CHHHHHHCC-----------CCEEEE-EECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEE
Q ss_conf             503444204-----------730344-53279869999818999689999389909999658998346999127998679
Q 002736          691 NQAILLLHL-----------GVSIGT-IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSY  758 (886)
Q Consensus       691 ~~~~~~~~~-----------~~~~~~-~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~  758 (886)
                      .........           ...... ..+...|.+++|+|+ ++.+++++.|+.|++||+.+.. .+..+..|..+|.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~s  248 (371)
T d1k8kc_         171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKM-AVATLASETLPLLA  248 (371)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEEEEEEGGGTT-EEEEEECSSCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC-CCCCCCCCCCCCCEEEEEECCC-CEEEEECCCCCCEE
T ss_conf             157643100122111111110112440476674789875123-3210000147860588641012-10000014665203


Q ss_pred             EEEC-CCCEEEEEECCCCEEEEECCCCCCCC-----CCC------------------------------CCEEEECCCCC
Q ss_conf             9964-99989999789949999479997665-----698------------------------------81386067885
Q 002736          759 VKFV-DATTLVSASTDNTLKLWDLSMCTSRV-----IDT------------------------------PLHSFTGHTNV  802 (886)
Q Consensus       759 i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~-----~~~------------------------------~~~~~~~h~~~  802 (886)
                      +.|+ ++.+++ ++.|+.+++|.........     ...                              .......|.+.
T Consensus       249 ~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~  327 (371)
T d1k8kc_         249 VTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS  327 (371)
T ss_dssp             EEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred             EEECCCCCEEE-EECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEECCCCCCC
T ss_conf             65469997999-98199267877608986288720206765421246220016850652058712455661412555698


Q ss_pred             EEEEEEECCC----CEEEEECCCCCEEEEECCC
Q ss_conf             3499991399----9999984999299971399
Q 002736          803 KNFVGLSVWD----GYVATGSETNEVFVYHKAF  831 (886)
Q Consensus       803 v~~v~~sp~~----~~lasgs~dg~i~iwd~~~  831 (886)
                      |+++++.+.+    ..++|+|.||.|++|++..
T Consensus       328 I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             EEEEEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf             899999489986567999991899399996986

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=267.66  Aligned_cols=228  Identities=15%  Similarity=0.185  Sum_probs=159.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCCHHHHHC---CCCCCCCH
Q ss_conf             54231025899983222235734420465456789977633443---3589629998517852344504---99998686
Q 002736            8 GERFGVRGDDSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENE---AAIDPFVHAIEWGDVSLRQWLD---KPKRSVDV   81 (886)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~g~sL~~~l~---~~~~~~~~   81 (886)
                      |+.++++--......+++|.  ..+.+-+|+|++.+++ ++...   ....+++++|||.++++.+.+.   .....+++
T Consensus        45 ~~~vAiK~i~~~~~~~~~Ei--~il~~l~h~niv~~~~-~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~  121 (350)
T d1q5ka_          45 GELVAIKKVLQDKRFKNREL--QIMRKLDHCNIVRLRY-FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPV  121 (350)
T ss_dssp             CCEEEEEEEECCSSSCCHHH--HHHHHCCCTTBCCEEE-EEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCH
T ss_pred             CCEEEEEEECCCCHHHHHHH--HHHHHCCCCCCCCEEE-EEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCH
T ss_conf             97999999881606899999--9998668989873878-99744765773189999841688607888863103689999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             89999999999999951014704225687604532488-53453077667999996311222223444688999973033
Q 002736           82 YECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFN-HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDML  160 (886)
Q Consensus        82 ~~~~~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~~~-~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (886)
                      .+++.+++||+.||.|||++||+||||||+|||++.++ .+|++|||+++......                        
T Consensus       122 ~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~------------------------  177 (350)
T d1q5ka_         122 IYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE------------------------  177 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTS------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHCCCCC------------------------
T ss_conf             99999999999999999866876457886037873589711673366054404776------------------------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEC
Q ss_conf             33210112344345688885355633446776676321125755444444444300000237898850332024662003
Q 002736          161 QRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYAS  240 (886)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a  240 (886)
                                                                                         ......|+..|+|
T Consensus       178 -------------------------------------------------------------------~~~~~~gt~~y~a  190 (350)
T d1q5ka_         178 -------------------------------------------------------------------PNVSYICSRYYRA  190 (350)
T ss_dssp             -------------------------------------------------------------------CCCSCCSCTTSCC
T ss_pred             -------------------------------------------------------------------CCCCCCCCCCCCC
T ss_conf             -------------------------------------------------------------------5320025555568


Q ss_pred             CCCCCCC-CCCCCCCCCHHHHHHHHHHC---CCCCCCHHHHHHHHHC------------------CCCCCH---------
Q ss_conf             5132799-98864651018899999732---8999943467767530------------------378990---------
Q 002736          241 PEELAGA-PVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLR------------------HRVLPP---------  289 (886)
Q Consensus       241 PE~~~~~-~~t~~sDIwSlGvil~ell~---pf~~~~~~~~~~~~~~------------------~~~~~~---------  289 (886)
                      ||++.+. .|+.++|||||||++|||++   ||............+.                  ...++.         
T Consensus       191 PE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (350)
T d1q5ka_         191 PELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKV  270 (350)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGT
T ss_pred             HHHHHCCCCCCCCEEECCCCEEEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCCCCCCCCCHHHH
T ss_conf             27764046888210002465277855028799898799999999999748981776543062101103554456744443


Q ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             2221590359999971599999998988886198877986
Q 002736          290 QLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       290 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      .....++.+.+|+.+||.+||.+|||+.|+|+||||+...
T Consensus       271 ~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         271 FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf             1568999999999997658955792999996698452466

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-41  Score=273.85  Aligned_cols=209  Identities=14%  Similarity=0.153  Sum_probs=165.4

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999-98686899999999999999510
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK-RSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .|.+|...  +.+.+|+|++.+++ +|.+    +.++++||| .+++|.+++.... ..+++.+++.|+.||+.||.|||
T Consensus        54 ~~~~E~~~--l~~l~HpnIv~~~g-~~~~----~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH  126 (272)
T d1qpca_          54 AFLAEANL--MKQLQHQRLVRLYA-VVTQ----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE  126 (272)
T ss_dssp             HHHHHHHH--HHHCCCTTBCCEEE-EECS----SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHCCCCCEEEEEE-EECC----CCEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999--98679998857873-1045----97699999578982888875147898878899999999999999997


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             14704225687604532488534530776679999963112222234446889999730333321011234434568888
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.+|++|||+++........                                         
T Consensus       127 ~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~-----------------------------------------  165 (272)
T d1qpca_         127 ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT-----------------------------------------  165 (272)
T ss_dssp             HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE-----------------------------------------
T ss_pred             HCCCCCCCCCHHHEEEECCCCEEECCCCCEEECCCCCCC-----------------------------------------
T ss_conf             489546756422515620244042341014773588644-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             53556334467766763211257554444444443000002378988503320246620035132799988646510188
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLG  259 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlG  259 (886)
                                                                      ......|+..|+|||++.+..|+.++||||||
T Consensus       166 ------------------------------------------------~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~G  197 (272)
T d1qpca_         166 ------------------------------------------------AREGAKFPIKWTAPEAINYGTFTIKSDVWSFG  197 (272)
T ss_dssp             ------------------------------------------------CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHH
T ss_pred             ------------------------------------------------CCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf             ------------------------------------------------20356774444582898379998245645257


Q ss_pred             HHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC--CCCCC
Q ss_conf             99999732---899994346776753037899022215903599999715999999989888861--98877
Q 002736          260 VLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ--SEFLN  326 (886)
Q Consensus       260 vil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~--h~~~~  326 (886)
                      |++|||+|   |++........+..+.....++.+...++.+.+|+.+||..||.+|||+.++++  ++||.
T Consensus       198 vvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         198 ILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             HHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf             999999968988888889999999997068888965571999999999758897689399999998611321

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=262.18  Aligned_cols=217  Identities=14%  Similarity=0.204  Sum_probs=157.6

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCC-----CCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7344204654567899776334433-----58962999851785234450499998686899999999999999510147
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEA-----AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQG  102 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~g  102 (886)
                      +...+...+|+|++.+++ ++....     ..+.++++||+.+..+..........+++.+++.+++||+.||.|||++|
T Consensus        59 E~~il~~l~h~nii~~~~-~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~  137 (318)
T d3blha1          59 EIKILQLLKHENVVNLIE-ICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK  137 (318)
T ss_dssp             HHHHHHHCCCTTBCCEEE-EEEC----------CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCEEE-EEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999835999660676-5402465444457638999853578741012220344330899999999999998852299


Q ss_pred             EEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             04225687604532488534530776679999963112222234446889999730333321011234434568888535
Q 002736          103 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLS  182 (886)
Q Consensus       103 iiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (886)
                      |+||||||+|||++.++.+|++|||+++.+........                                          
T Consensus       138 ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~------------------------------------------  175 (318)
T d3blha1         138 ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQP------------------------------------------  175 (318)
T ss_dssp             EECCCCCGGGEEECTTSCEEECCCTTCEECCC-----C------------------------------------------
T ss_pred             EEECCCCCHHEEECCCCCEEEEECCEEEECCCCCCCCC------------------------------------------
T ss_conf             88567672220366899687631350022355444321------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCC-CCCCCCCCCHHHHH
Q ss_conf             56334467766763211257554444444443000002378988503320246620035132799-98864651018899
Q 002736          183 EASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGA-PVSCASDIYRLGVL  261 (886)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~-~~t~~sDIwSlGvi  261 (886)
                                                                  ......+||++|+|||++.+. .|++++|||||||+
T Consensus       176 --------------------------------------------~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvi  211 (318)
T d3blha1         176 --------------------------------------------NRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCI  211 (318)
T ss_dssp             --------------------------------------------CCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred             --------------------------------------------CCCCCEECCHHHHHHHHHCCCCCCCCHHHCCCCCCE
T ss_conf             --------------------------------------------135660249787428997079998917870067864


Q ss_pred             HHHHHC---CCCCCCHHHHHH--HHHCCCCCCHH----------------------------HHCCCHHHHHHHHHCCCC
Q ss_conf             999732---899994346776--75303789902----------------------------221590359999971599
Q 002736          262 LFELFC---PFSTGEEKTRTM--SSLRHRVLPPQ----------------------------LLLKFPKEASFCLWLLHP  308 (886)
Q Consensus       262 l~ell~---pf~~~~~~~~~~--~~~~~~~~~~~----------------------------~~~~~~~~~~li~~~L~~  308 (886)
                      +|||++   ||..........  ........+..                            .....+.+.+|+.+||.+
T Consensus       212 l~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~  291 (318)
T d3blha1         212 MAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVL  291 (318)
T ss_dssp             HHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCS
T ss_pred             EEEHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf             66174487998998999999999984189982553443203444332013344555033404445998999999998738


Q ss_pred             CCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf             99999898888619887798674
Q 002736          309 EPSGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       309 dP~~Rpt~~eil~h~~~~~~~~~  331 (886)
                      ||++|||+.|+|+||||...+.+
T Consensus       292 dP~~R~sa~elL~Hpff~~~p~p  314 (318)
T d3blha1         292 DPAQRIDSDDALNHDFFWSDPMP  314 (318)
T ss_dssp             STTTSCCHHHHHHSGGGSSSSCC
T ss_pred             CHHHCCCHHHHHCCHHHCCCCCC
T ss_conf             96589099999749501569999

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-41  Score=271.04  Aligned_cols=207  Identities=15%  Similarity=0.095  Sum_probs=163.4

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22223573442046545678997763344335896299985178523445049999868689999999999999951014
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      .|.+|..  .+...+|+|++.+++ +|.+   ...+++++++.+++|.+++......+++..++.|+.||+.||.|||++
T Consensus        57 ~~~~E~~--~l~~l~HpnIv~l~g-~~~~---~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~  130 (317)
T d1xkka_          57 EILDEAY--VMASVDNPHVCRLLG-ICLT---STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR  130 (317)
T ss_dssp             HHHHHHH--HHHHCCCTTBCCEEE-EEES---SSEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH--HHHHCCCCCEEEEEE-EEEC---CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999--998679988815899-9961---983699984268740101113345799999999999999999999876


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++++|++|||+++........                                           
T Consensus       131 ~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~-------------------------------------------  167 (317)
T d1xkka_         131 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE-------------------------------------------  167 (317)
T ss_dssp             TCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------------------------------------------
T ss_pred             CCCCCCCHHHCCEECCCCCEEEECCCCCEECCCCCCC-------------------------------------------
T ss_conf             9504762120311679987586025522233544453-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             55633446776676321125755444444444300000237898850332024662003513279998864651018899
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvi  261 (886)
                                                                   .......||..|+|||++.+..|+.++|||||||+
T Consensus       168 ---------------------------------------------~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvi  202 (317)
T d1xkka_         168 ---------------------------------------------YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVT  202 (317)
T ss_dssp             ----------------------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             ---------------------------------------------CCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf             ---------------------------------------------22365105864467088746999835654407999


Q ss_pred             HHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             999732---8999943467767530378990222159035999997159999999898888619
Q 002736          262 LFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       262 l~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      ||||+|   +++...........+..+..++.+...++.+.+++.+||..||.+|||+.|++.+
T Consensus       203 l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  266 (317)
T d1xkka_         203 VWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  266 (317)
T ss_dssp             HHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             9999977999999999899999997599899985568999999998478993469199999999

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-40  Score=267.16  Aligned_cols=203  Identities=19%  Similarity=0.187  Sum_probs=162.2

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22235734420465456789977633443358962999851-78523445049999868689999999999999951014
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      |.+|.  ..+...+|+|++.+++ +|.    .+.++++||| .+++|.+++......+++..++.++.||+.||.|+|++
T Consensus        55 ~~~E~--~~l~~l~HpnIv~l~~-~~~----~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~  127 (273)
T d1mp8a_          55 FLQEA--LTMRQFDHPHIVKLIG-VIT----ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK  127 (273)
T ss_dssp             HHHHH--HHHHTCCCTTBCCEEE-EEC----SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH--HHHHHCCCCCEEEEEE-EEE----CCEEEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999--9998689999856988-995----3747999984069807765422478999999999999998775230226


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+||+++..+.+|++|||+++.......                                            
T Consensus       128 ~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~--------------------------------------------  163 (273)
T d1mp8a_         128 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY--------------------------------------------  163 (273)
T ss_dssp             TCCCSCCSGGGEEEEETTEEEECC--------------------------------------------------------
T ss_pred             CEECCCCCHHHEEECCCCCEEECCCHHHEECCCCCC--------------------------------------------
T ss_conf             744141026553206789678765034213367762--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             55633446776676321125755444444444300000237898850332024662003513279998864651018899
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVL  261 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvi  261 (886)
                                                                   ...+...||++|+|||++.+..|+.++|||||||+
T Consensus       164 ---------------------------------------------~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvi  198 (273)
T d1mp8a_         164 ---------------------------------------------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVC  198 (273)
T ss_dssp             ----------------------------------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHH
T ss_pred             ---------------------------------------------EECCCEECCCCCCHHHHHCCCCCCCCCCCCCCHHH
T ss_conf             ---------------------------------------------33054005831032667516998874524442478


Q ss_pred             HHHHHC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             999732----8999943467767530378990222159035999997159999999898888619
Q 002736          262 LFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       262 l~ell~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      +|||++    ||. .......+..+.....++.+...++.+.+|+.+||..||.+|||+.|++++
T Consensus       199 l~e~lt~g~~P~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         199 MWEILMHGVKPFQ-GVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             HHHHHTTSCCTTT-TCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHCCCCCCC-CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             9999826999988-899999999998189998987779999999999768797689299999999

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=266.88  Aligned_cols=210  Identities=18%  Similarity=0.238  Sum_probs=158.8

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             7344204654567899776334433589629998517852344504-999986868999999999999995101470422
Q 002736           28 DGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLD-KPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVH  106 (886)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~sL~~~l~-~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHr  106 (886)
                      +...+.+.+|++++.+++ ++.   ..+.+|++|||.++++.+++. .....+++.+++.++.||+.||.|||++|||||
T Consensus        51 Ei~il~~l~Hp~Iv~~~~-~~~---~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHr  126 (298)
T d1gz8a_          51 EISLLKELNHPNIVKLLD-VIH---TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHR  126 (298)
T ss_dssp             HHHHHTTCCCTTBCCEEE-EEE---ETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHCCCCCEEEECC-CCC---CCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECC
T ss_conf             999998679983887445-332---2432037886237744555442025688889999999999999998652889921


Q ss_pred             CCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             56876045324885345307766799999631122222344468899997303333210112344345688885355633
Q 002736          107 NVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASC  186 (886)
Q Consensus       107 DlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (886)
                      ||||+|||++.++.+|++|||.++....+..                                                 
T Consensus       127 DiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~-------------------------------------------------  157 (298)
T d1gz8a_         127 DLKPQNLLINTEGAIKLADFGLARAFGVPVR-------------------------------------------------  157 (298)
T ss_dssp             CCCGGGEEECTTSCEEECSTTHHHHHCCCSB-------------------------------------------------
T ss_pred             CCCCHHEEECCCCCCEECCCCCCEECCCCCC-------------------------------------------------
T ss_conf             3571140113467621035786134368864-------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCC-CCCCCCCCHHHHHHHHH
Q ss_conf             44677667632112575544444444430000023789885033202466200351327999-88646510188999997
Q 002736          187 MQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFEL  265 (886)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~t~~sDIwSlGvil~el  265 (886)
                                                               ......||+.|+|||++.... ++.++|||||||++|+|
T Consensus       158 -----------------------------------------~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m  196 (298)
T d1gz8a_         158 -----------------------------------------TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEM  196 (298)
T ss_dssp             -----------------------------------------CTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CCEEECCCCEEEEHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             -----------------------------------------100103652154112213665777422103333134279


Q ss_pred             HC---CCCCCCHHHHHHHHHCC--C----C-------------C--------CHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             32---89999434677675303--7----8-------------9--------9022215903599999715999999989
Q 002736          266 FC---PFSTGEEKTRTMSSLRH--R----V-------------L--------PPQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       266 l~---pf~~~~~~~~~~~~~~~--~----~-------------~--------~~~~~~~~~~~~~li~~~L~~dP~~Rpt  315 (886)
                      ++   ||...............  .    .             .        .......++.+.+|+.+||.+||.+|||
T Consensus       197 ~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t  276 (298)
T d1gz8a_         197 VTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRIS  276 (298)
T ss_dssp             HHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCC
T ss_conf             66879989889999999999832898333144422242124345432222044416678999999999976399557918


Q ss_pred             HHHHHCCCCCCCCCCC
Q ss_conf             8888619887798674
Q 002736          316 MGELLQSEFLNEPRDS  331 (886)
Q Consensus       316 ~~eil~h~~~~~~~~~  331 (886)
                      +.|+++||||+....+
T Consensus       277 ~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         277 AKAALAHPFFQDVTKP  292 (298)
T ss_dssp             HHHHHTSGGGTTCCCC
T ss_pred             HHHHHCCHHHCCCCCC
T ss_conf             9999678701469999

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-34  Score=225.75  Aligned_cols=301  Identities=19%  Similarity=0.282  Sum_probs=233.5

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEC
Q ss_conf             00453346247864137448899205733589998899999689998999968991999975864475665333348723
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .+++..||.+++|+..+.++.+.+     .+|.+.|.+++|+++  +|++|+.|+.+++|+......       ......
T Consensus        30 l~sgs~Dg~i~vWd~~~~~~~~~~-----~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~-------~~~~~~   95 (342)
T d2ovrb2          30 IVSGSDDNTLKVWSAVTGKCLRTL-----VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC-------IHTLYG   95 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEC-----CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEE-------EEEECC
T ss_pred             EEEEECCCEEEEEECCCCCEEEEE-----ECCCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCC-------EECCCC
T ss_conf             999918990999989999799999-----488999899994798--632100000111111110000-------000123


Q ss_pred             CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHH
Q ss_conf             78980169980799986999628991999987886278881235874999998139999899981899499994750344
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       616 ~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~  695 (886)
                      ....+....+.   ...++.+..|+.+.+|+..+++....+..+........  + ....+++++.|+.+++||.+.   
T Consensus        96 ~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~d~~i~~~d~~~---  166 (342)
T d2ovrb2          96 HTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ--Y-DGRRVVSGAYDFMVKVWDPET---  166 (342)
T ss_dssp             CSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE--E-CSSCEEEEETTSCEEEEEGGG---
T ss_pred             CCEEEEEEECC---CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEC--C-CCCEEEEECCCCEEEEEECCC---
T ss_conf             33047652024---65221234440378740355630011100111100000--1-333024335898699952523---


Q ss_pred             HHCCCCEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             4204730344532-798699998189996899993899099996589983469991279986799964999899997899
Q 002736          696 LLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDN  774 (886)
Q Consensus       696 ~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~l~sgs~Dg  774 (886)
                          ...+..+.. ...+.++.  ++ +..+++|+.|+.|++||++..+ ++..+.+|...+.++.+. ++++++++.|+
T Consensus       167 ----~~~~~~~~~~~~~~~~~~--~~-~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~l~s~s~d~  237 (342)
T d2ovrb2         167 ----ETCLHTLQGHTNRVYSLQ--FD-GIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELK-DNILVSGNADS  237 (342)
T ss_dssp             ----TEEEEEECCCSSCEEEEE--EC-SSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEE-TTEEEEEETTS
T ss_pred             ----CEEEEEECCCCCCCCCCC--CC-CCEEEEEECCCEEEEEECCCCE-EEEEECCCCCCEEEEECC-CCEEEEECCCC
T ss_conf             ----436678727544421006--89-9999999589939995255653-656741665320577068-99999974898


Q ss_pred             CEEEEECCCCCCCCCCCCCEEEEC---CCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             499994799976656988138606---78853499991399999998499929997139998610103579999998855
Q 002736          775 TLKLWDLSMCTSRVIDTPLHSFTG---HTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPET  851 (886)
Q Consensus       775 ~I~iwd~~~~~~~~~~~~~~~~~~---h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  851 (886)
                      .|++||+.....      ...+.+   |...+.++.+  ++.++++|+.||.|++||+.+++.+..+...        ..
T Consensus       238 ~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~--------~~  301 (342)
T d2ovrb2         238 TVKIWDIKTGQC------LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTL--------ES  301 (342)
T ss_dssp             CEEEEETTTCCE------EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEEC--------TT
T ss_pred             EEEEEECCCCCC------CCCCCCCCEEEECEEECCC--CCCEEEEECCCCEEEEEECCCCCEEEEEECC--------CC
T ss_conf             899986554422------1112210001101000013--7984499908998999999999798998623--------47


Q ss_pred             CCCCCCEEEEEECCCCCCEEEEEECCCC----EEEEEE
Q ss_conf             6679959999990699959999847997----999970
Q 002736          852 DDAAQFISSVCWRGQSSNTLVAANSSGN----IKILEM  885 (886)
Q Consensus       852 ~~~~~~V~~v~~~~~~~~~lvs~~~dg~----I~iw~l  885 (886)
                      .+|...|++++|+|++. +|++|+.||+    |++|++
T Consensus       302 ~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         302 GGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             GGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEEC
T ss_pred             CCCCCCEEEEEECCCCC-EEEEEECCCCCEEEEEEEEC
T ss_conf             89889789999879998-99999689997048999938

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-40  Score=267.49  Aligned_cols=214  Identities=13%  Similarity=0.098  Sum_probs=169.4

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3222235734420465456789977633443358962999851-785234450499-99868689999999999999951
Q 002736           21 FELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYECLHIFRQIVEIVYAA   98 (886)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~l   98 (886)
                      ..|.+|...  +...+|+|++.+++ +|.+    +.++++||| .+|+|.+++... ...+++.+++.|+.||+.||.||
T Consensus        57 ~~~~~E~~~--l~~l~h~nIv~~~g-~~~~----~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~L  129 (285)
T d1fmka3          57 EAFLQEAQV--MKKLRHEKLVQLYA-VVSE----EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV  129 (285)
T ss_dssp             HHHHHHHHH--HHHCCCTTBCCEEE-EECS----SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHCCCCCEEEEEE-EEEC----CCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999--98666678868999-9823----9759999944799435420000355305999999999999999987


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             01470422568760453248853453077667999996311222223444688999973033332101123443456888
Q 002736           99 HSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT  178 (886)
Q Consensus        99 Hs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (886)
                      |++||+||||||+|||++.++.+|++|||+++........                                        
T Consensus       130 H~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~----------------------------------------  169 (285)
T d1fmka3         130 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT----------------------------------------  169 (285)
T ss_dssp             HHTTCCCSCCSGGGEEECGGGCEEECCCCTTC------------------------------------------------
T ss_pred             HHHHEECCCCCCEEEEECCCCCEEECCCCHHHHCCCCCCE----------------------------------------
T ss_conf             5411433531230799989992998442555425688733----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHH
Q ss_conf             85355633446776676321125755444444444300000237898850332024662003513279998864651018
Q 002736          179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRL  258 (886)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSl  258 (886)
                                                                       ..+...||+.|+|||++.+..++.++|||||
T Consensus       170 -------------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~  200 (285)
T d1fmka3         170 -------------------------------------------------ARQGAKFPIKWTAPEAALYGRFTIKSDVWSF  200 (285)
T ss_dssp             -------------------------------------------------------CCGGGSCHHHHHHCCCCHHHHHHHH
T ss_pred             -------------------------------------------------EECCCCCCCCCCCHHHHHCCCCCCHHHHHCC
T ss_conf             -------------------------------------------------5245455665458089837998917741323


Q ss_pred             HHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC--CCCCCCCCC
Q ss_conf             899999732---899994346776753037899022215903599999715999999989888861--988779867
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ--SEFLNEPRD  330 (886)
Q Consensus       259 Gvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~--h~~~~~~~~  330 (886)
                      ||+||||++   |++........+..+.....++.....++.+.+++.+||..||++||++.+++.  ++||....+
T Consensus       201 Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~p  277 (285)
T d1fmka3         201 GILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  277 (285)
T ss_dssp             HHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCC
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf             58999998689999988889999999982689999832379999999997566975891999999987666238999

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-35  Score=236.45  Aligned_cols=285  Identities=12%  Similarity=0.126  Sum_probs=172.8

Q ss_pred             CEEEEEECCCCCEEEEEECCC-CEEEEECCCCCCCCCCCCCCEEEECC-CCCEEEEEEECC-CCCEEEEECCCCCEEEEE
Q ss_conf             889999968999899996899-19999758644756653333487237-898016998079-998699962899199998
Q 002736          570 LVCSLSFDRDGELFAAAGVNK-KIKVFECDAIINENRDIHYPVVEMAS-RSKLSSICWNSY-IKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       570 ~V~si~fs~dg~~latg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~I~~i~~~~~-~~~~l~s~s~Dg~V~iWd  646 (886)
                      .+++++|+|+++.|+.++.+. .|+.|+....     .........+| ...|++++|+|. ++.+|++|+.||+|++||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-----~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCC-----SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEEECCCC-----CCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf             84799998997999999699879999768888-----7650289907899988999981179997999994899779854


Q ss_pred             CCCCEE--------EEEECCCCCCEEEEEECCCCCCEEEEEEC--CCCEEEEECCHHHHHHCCCCEEEEEE-CCCCEEEE
Q ss_conf             788627--------88812358749999981399998999818--99499994750344420473034453-27986999
Q 002736          647 VSRSQV--------LTEMREHERRVWSIDFSSADPTLLASGSD--DGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCV  715 (886)
Q Consensus       647 ~~~~~~--------~~~~~~h~~~V~~i~~sp~~~~~l~sgs~--Dg~v~iwdl~~~~~~~~~~~~~~~~~-~~~~v~~i  715 (886)
                      +..++.        ...+..|.++|.+++|++ ++..+++++.  ++.+.+|+..+       +..+..+. +...|.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~  165 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDS-------GNSLGEVSGHSQRINAC  165 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTT-------CCEEEECCSCSSCEEEE
T ss_pred             ECCCCCEEEEECCCCCCCCCCCCCEEEEEECC-CCCCCCEEECCCCCEEEEEEECC-------CCCCEEEEECCCCCCCC
T ss_conf             05886215651002541136567377999899-98822010012440478885023-------31100120012343211


Q ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCCCCEEEE---ECCCCCEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf             9818999689999389909999658998346999---1279986799964--9998999978994999947999766569
Q 002736          716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL---IGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLSMCTSRVID  790 (886)
Q Consensus       716 ~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~---~~h~~~V~~i~f~--~~~~l~sgs~Dg~I~iwd~~~~~~~~~~  790 (886)
                      +|+|++...+++++.|+.+++||+...+. ....   ..|...|.+++|+  .+.++++++.|+.|++||++++      
T Consensus       166 ~~~~~~~~~~~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~------  238 (325)
T d1pgua1         166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------  238 (325)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCC-CEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC------
T ss_conf             11234320688862111221111221100-00000015777752776303453100001123321013430012------


Q ss_pred             CCCEEEECCCCCEEEEEEE---CCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             8813860678853499991---3999999984999299971399986101035799999988556679959999990699
Q 002736          791 TPLHSFTGHTNVKNFVGLS---VWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQS  867 (886)
Q Consensus       791 ~~~~~~~~h~~~v~~v~~s---p~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~  867 (886)
                      ..+.++.+|...+..+.|+   +++.+|++++.|+.|+|||+..++++..+......         ......++.|.+++
T Consensus       239 ~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  309 (325)
T d1pgua1         239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ---------LGNQQVGVVATGNG  309 (325)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC---------GGGCEEEEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCC---------CCCEEEEEEECCCC
T ss_conf             221111111111111000000368999999958993999999999788999954874---------06769999988999


Q ss_pred             CCEEEEEECCCCEEEEEE
Q ss_conf             959999847997999970
Q 002736          868 SNTLVAANSSGNIKILEM  885 (886)
Q Consensus       868 ~~~lvs~~~dg~I~iw~l  885 (886)
                        .|++++.||.|++|+|
T Consensus       310 --~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         310 --RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             --EEEEEETTSCEEEEET
T ss_pred             --EEEEEECCCEEEEEEC
T ss_conf             --9999979999999979

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.9e-38  Score=255.37  Aligned_cols=224  Identities=14%  Similarity=0.203  Sum_probs=158.3

Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             5423102589-9983222235734420465456789977633443358962999851-7852344504999986868999
Q 002736            8 GERFGVRGDD-SNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECL   85 (886)
Q Consensus         8 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~   85 (886)
                      |+.++++--. .....+++|...+... ..|++++.++. ++..+ ....++++||| .+++|.++.    +.+++.+++
T Consensus        60 ~~~vAiK~i~~~~~~~~~~Ei~il~~l-~~hpnIv~~~~-~~~~~-~~~~~~~v~e~~~~~~L~~~~----~~l~e~~i~  132 (328)
T d3bqca1          60 NEKVVVKILKPVKKKKIKREIKILENL-RGGPNIITLAD-IVKDP-VSRTPALVFEHVNNTDFKQLY----QTLTDYDIR  132 (328)
T ss_dssp             TEEEEEEEECSSCHHHHHHHHHHHHHH-TTSTTBCCEEE-EEECT-TTCSEEEEEECCCSCBGGGTT----TSCCHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHC-CCCCCCCEEEE-EEEEC-CCCCEEEEEEECCCCCHHHHH----CCCCHHHHH
T ss_conf             979999998889999999999999851-57998767999-99816-877126888631798589974----689999999


Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9999999999951014704225687604532488-534530776679999963112222234446889999730333321
Q 002736           86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFN-HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRT  164 (886)
Q Consensus        86 ~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~~~-~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (886)
                      .+++||+.||.|||++||+||||||+|||++..+ .+|++|||+++......                            
T Consensus       133 ~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~----------------------------  184 (328)
T d3bqca1         133 FYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ----------------------------  184 (328)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC----------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEECCCCCCEECCCCC----------------------------
T ss_conf             9999999999887643344345644123774899836641565426646887----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCC
Q ss_conf             01123443456888853556334467766763211257554444444443000002378988503320246620035132
Q 002736          165 RLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEEL  244 (886)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~  244 (886)
                                                                                     ......+|+.|+|||.+
T Consensus       185 ---------------------------------------------------------------~~~~~~~t~~y~aPE~~  201 (328)
T d3bqca1         185 ---------------------------------------------------------------EYNVRVASRYFKGPELL  201 (328)
T ss_dssp             ---------------------------------------------------------------CCCSCCSCGGGCCHHHH
T ss_pred             ---------------------------------------------------------------CCCCCCCCCCCCCCCCC
T ss_conf             ---------------------------------------------------------------44432248642476102


Q ss_pred             CCCC-CCCCCCCCHHHHHHHHHHC---CCCCCCHHHHHHHHHCC------------------------------------
Q ss_conf             7999-8864651018899999732---89999434677675303------------------------------------
Q 002736          245 AGAP-VSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH------------------------------------  284 (886)
Q Consensus       245 ~~~~-~t~~sDIwSlGvil~ell~---pf~~~~~~~~~~~~~~~------------------------------------  284 (886)
                      .+.. ++.++||||+||++||+++   ||............+..                                    
T Consensus       202 ~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (328)
T d3bqca1         202 VDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWER  281 (328)
T ss_dssp             TTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGG
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHCCCCCCCCHHH
T ss_conf             68888884523233545558760488999887601899999999878841555554225444743000003334331121


Q ss_pred             CCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             789902221590359999971599999998988886198877986
Q 002736          285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       285 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      ....+.....++++.+|+.+||.+||.+|||++|+|+||||....
T Consensus       282 ~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~  326 (328)
T d3bqca1         282 FVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVV  326 (328)
T ss_dssp             GCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCC
T ss_conf             155211244899999999998669956890899996493558879

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=261.96  Aligned_cols=210  Identities=15%  Similarity=0.105  Sum_probs=167.1

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|++|.+.+  ..-+|+|++.+++ +|.+  ....++++||| .+++|.+++......+++.+++.++.||+.||.|+|+
T Consensus        74 ~~~~E~~~l--~~l~HpnIv~~~g-~~~~--~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~  148 (311)
T d1r0pa_          74 QFLTEGIIM--KDFSHPNVLSLLG-ICLR--SEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS  148 (311)
T ss_dssp             HHHHHHHHH--HTCCCTTBCCCCE-EEEE--TTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHCCCCCEEEEEE-EEEE--CCCCEEEEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999--8678999867867-8980--6994389998740674144210134540489999999998876520033


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             47042256876045324885345307766799999631122222344468899997303333210112344345688885
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (886)
                      .||+||||||+|||++..+.+|++|||+++..........                                        
T Consensus       149 ~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~----------------------------------------  188 (311)
T d1r0pa_         149 KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV----------------------------------------  188 (311)
T ss_dssp             TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT----------------------------------------
T ss_pred             CCCCCCCCCHHHEEECCCCCEEEECCCCHHHCCCCCCCCC----------------------------------------
T ss_conf             6762577668757677999889910652322556655531----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             35563344677667632112575544444444430000023789885033202466200351327999886465101889
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGv  260 (886)
                                                                    .......||+.|+|||.+.+..++.++||||||+
T Consensus       189 ----------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGi  222 (311)
T d1r0pa_         189 ----------------------------------------------HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGV  222 (311)
T ss_dssp             ----------------------------------------------TCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHH
T ss_pred             ----------------------------------------------EECCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHH
T ss_conf             ----------------------------------------------0025655564556768874379997457466199


Q ss_pred             HHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             9999732---8999943467767530378990222159035999997159999999898888619
Q 002736          261 LLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       261 il~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      ++|||++   ||............+.....++.+...++.+.+|+.+||..||.+||++.|++++
T Consensus       223 vl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         223 LLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             HHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             99999978999988899999999998089889964475999999999768897689399999999

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-34  Score=226.73  Aligned_cols=267  Identities=21%  Similarity=0.294  Sum_probs=225.0

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEC
Q ss_conf             00453346247864137448899205733589998899999689998999968991999975864475665333348723
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .+++..||.+++|+..+.+....+     ..|...|++++|+|++.++++|+.|+.+.+|+.........   .......
T Consensus        70 l~sgs~Dg~v~iWd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~---~~~~~~~  141 (340)
T d1tbga_          70 LVSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR---VSRELAG  141 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEE-----ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCC---EEEEECC
T ss_pred             EEEEECCCCEEEEECCCCEEEEEE-----ECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCC---CCEECCC
T ss_conf             999978995556310210257997-----24653377567601211443101332010133222212221---1100135


Q ss_pred             CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHH
Q ss_conf             78980169980799986999628991999987886278881235874999998139999899981899499994750344
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       616 ~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~  695 (886)
                      |.....+..+..  ...+.....|+....|.............+...+....+.+ ...++++|+.|+.|++||+++   
T Consensus       142 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~---  215 (340)
T d1tbga_         142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE---  215 (340)
T ss_dssp             CSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT---
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCEEEEEECCCEEEEEECCC---
T ss_conf             421101111111--11111112445432001232211111233101576300124-421268760573699999999---


Q ss_pred             HHCCCCEEEEEE-CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEE--ECCCCCEEEEEEC-CCCEEEEEE
Q ss_conf             420473034453-279869999818999689999389909999658998346999--1279986799964-999899997
Q 002736          696 LLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL--IGHNKTVSYVKFV-DATTLVSAS  771 (886)
Q Consensus       696 ~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~--~~h~~~V~~i~f~-~~~~l~sgs  771 (886)
                          +..+..+. +...|++++|+|+ +.+|++|+.|+.|++||++.... ...+  ..+...|.++.|+ ++.+|++|+
T Consensus       216 ----~~~~~~~~~h~~~i~~v~~~p~-~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         216 ----GMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             ----TEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECSSSCEEEEEE
T ss_pred             ----CCEEEEEECCCCCEEEEEECCC-CCEEEEEECCCEEEEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf             ----9488999578898589999799-89999996999699975212211-11111224457458999989999999997


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             899499994799976656988138606788534999913999999984999299971
Q 002736          772 TDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       772 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd  828 (886)
                      .||.|++||+.++      .++.++.+|...|++++|+|++.+|++||.||.|+|||
T Consensus       290 ~dg~i~iwd~~~~------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 DDFNCNVWDALKA------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCC------CEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             9798999999999------39899848999789999908999999990699799859

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-35  Score=236.83  Aligned_cols=301  Identities=11%  Similarity=0.029  Sum_probs=219.8

Q ss_pred             CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEE
Q ss_conf             35899988999996899989999689919999758644756653333487237898016998079998699962899199
Q 002736          564 LLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQ  643 (886)
Q Consensus       564 l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~  643 (886)
                      +.+|++.|++++|+|++++||+|+.|++|+||++.....    .........|..+|.+++|++..+.+|++|+.||.|+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCC----CEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEE
T ss_conf             889989788899958999999997999299997569986----3689885589998899999589997899812653114


Q ss_pred             EEECCCCEEEEEECCCCCC-EEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf             9987886278881235874-999998139999899981899499994750344420473034453279869999818999
Q 002736          644 VWDVSRSQVLTEMREHERR-VWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSG  722 (886)
Q Consensus       644 iWd~~~~~~~~~~~~h~~~-V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  722 (886)
                      +|+............+... .....+.+ +...+++++.|+++++||++.........................+.+. +
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  160 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN-S  160 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC-S
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECC-C
T ss_conf             5420443200000111111111111111-1111111012221110202344433023000243001200000100016-8


Q ss_pred             CEEEEEECCCEEEEEECCCCCCC--EEEEECCCCCEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCCCCCC-------
Q ss_conf             68999938990999965899834--69991279986799964--99989999789949999479997665698-------
Q 002736          723 RSLAFGSADHRIYYYDLRNSKIP--LCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLSMCTSRVIDT-------  791 (886)
Q Consensus       723 ~~l~~gs~dg~I~iwDl~~~~~~--~~~~~~h~~~V~~i~f~--~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-------  791 (886)
                      ..+++++.|+.|++||++.....  ......+...+.++.+.  ++..+++++.||.+.+|++..........       
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEE
T ss_conf             70246517984788760567634111210254221014676369998788654899599998059864011123512565


Q ss_pred             --CCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf             --813860678853499991399999998499929997139998610103579999998855667995999999069995
Q 002736          792 --PLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSN  869 (886)
Q Consensus       792 --~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~  869 (886)
                        ......+|...+++++|+|++.+|++|+.||.|++||+..++.+..+...              ..+..++|++++. 
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~--------------~~~~~~~~s~~~~-  305 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF--------------NEDSVVKIACSDN-  305 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--------------SSSEEEEEEECSS-
T ss_pred             EEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC--------------CCCEEEEEEECCC-
T ss_conf             5531477762354315996698447999879998999999989498870589--------------9987999994799-


Q ss_pred             EEEEEECCCCEEEEEE
Q ss_conf             9999847997999970
Q 002736          870 TLVAANSSGNIKILEM  885 (886)
Q Consensus       870 ~lvs~~~dg~I~iw~l  885 (886)
                      .|++|++|+.+++|..
T Consensus       306 ~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         306 ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEEEECTHHHHCSS
T ss_pred             EEEEEECCCCEEEEEE
T ss_conf             9999991992788301

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.6e-39  Score=260.88  Aligned_cols=210  Identities=17%  Similarity=0.208  Sum_probs=157.0

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22223573442046545678997763344335896299985178523445049999868689999999999999951014
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQ  101 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~  101 (886)
                      .|.+|.  ..+.+-+|+|++.+++ .+.   ....++++|++.++++...+....+.+++..+..+++||+.||.|||++
T Consensus        46 ~~~~E~--~il~~l~hpnIv~~~~-~~~---~~~~~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~  119 (286)
T d1ob3a_          46 TTIREI--SILKELKHSNIVKLYD-VIH---TKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR  119 (286)
T ss_dssp             HHHHHH--HGGGGCCCTTBCCEEE-EEE---CSSCEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH--HHHHHCCCCCEEEEEE-ECC---CCCCEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999--9998679986876601-204---6773158997400456789986047751445689999999999986057


Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             70422568760453248853453077667999996311222223444688999973033332101123443456888853
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL  181 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (886)
                      ||+||||||+|||++.++.+|++|||.+.....+..                                            
T Consensus       120 ~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~--------------------------------------------  155 (286)
T d1ob3a_         120 RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR--------------------------------------------  155 (286)
T ss_dssp             TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------------------------------------------
T ss_pred             CEEECCCCCCEEEECCCCCEEECCCCCCEECCCCCC--------------------------------------------
T ss_conf             488267877505686899787323664301146765--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCC-CCCCCCCCHHHH
Q ss_conf             5563344677667632112575544444444430000023789885033202466200351327999-886465101889
Q 002736          182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGV  260 (886)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~t~~sDIwSlGv  260 (886)
                                                                    ......+++.|+|||++.+.. +++++|||||||
T Consensus       156 ----------------------------------------------~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv  189 (286)
T d1ob3a_         156 ----------------------------------------------KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGC  189 (286)
T ss_dssp             ----------------------------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHH
T ss_pred             ----------------------------------------------CCCEECCCCHHHHHHHHHCCCCCCCCEEEHHCCC
T ss_conf             ----------------------------------------------4101024311013788717888884100211175


Q ss_pred             HHHHHHC---CCCCCCHHHHHHHHHCC--C-------------------------CCCHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             9999732---89999434677675303--7-------------------------8990222159035999997159999
Q 002736          261 LLFELFC---PFSTGEEKTRTMSSLRH--R-------------------------VLPPQLLLKFPKEASFCLWLLHPEP  310 (886)
Q Consensus       261 il~ell~---pf~~~~~~~~~~~~~~~--~-------------------------~~~~~~~~~~~~~~~li~~~L~~dP  310 (886)
                      ++|||++   ||...............  .                         .....+...++.+.+|+.+||.+||
T Consensus       190 ~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP  269 (286)
T d1ob3a_         190 IFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDP  269 (286)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSST
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCH
T ss_conf             89999779799898898999999998638997110421233322143333356764666512589999999999866896


Q ss_pred             CCCCCHHHHHCCCCCCC
Q ss_conf             99989888861988779
Q 002736          311 SGRPKMGELLQSEFLNE  327 (886)
Q Consensus       311 ~~Rpt~~eil~h~~~~~  327 (886)
                      ++|||+.|+|+||||++
T Consensus       270 ~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         270 NQRITAKQALEHAYFKE  286 (286)
T ss_dssp             TTSCCHHHHHTSGGGGC
T ss_pred             HHCCCHHHHHCCCCCCC
T ss_conf             68909999856922074

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-39  Score=261.92  Aligned_cols=208  Identities=16%  Similarity=0.209  Sum_probs=165.9

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             983222235734420465456789977633443358962999851-7852344504999986868999999999999995
Q 002736           19 NDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYA   97 (886)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~   97 (886)
                      ....|.+|..  .+.+.+|+|++.+++ +|.+   ...++++||| .+++|.+++......+++..++.++.||+.||.|
T Consensus        42 ~~~~~~~Ev~--~~~~l~HpnIv~~~g-~~~~---~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~  115 (258)
T d1k2pa_          42 SEDEFIEEAK--VMMNLSHEKLVQLYG-VCTK---QRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEY  115 (258)
T ss_dssp             CHHHHHHHHH--HHHTCCCTTBCCEEE-EECC---SSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH--HHHHCCCCCEEEEEE-EEEE---CCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7899999999--999668986015889-9850---781699997048993888641024677689999999999999998


Q ss_pred             HCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             10147042256876045324885345307766799999631122222344468899997303333210112344345688
Q 002736           98 AHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAP  177 (886)
Q Consensus        98 lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (886)
                      ||++||+||||||+||+++.++.+|++|||+++........                                       
T Consensus       116 LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~---------------------------------------  156 (258)
T d1k2pa_         116 LESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT---------------------------------------  156 (258)
T ss_dssp             HHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCC---------------------------------------
T ss_pred             HHHCCCCCCCCCCEEEEECCCCCEEECCCHHHEECCCCCCE---------------------------------------
T ss_conf             75468434665413588769984798861442023578722---------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCH
Q ss_conf             88535563344677667632112575544444444430000023789885033202466200351327999886465101
Q 002736          178 TNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR  257 (886)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwS  257 (886)
                                                                        ......||..|+|||.+.+..|+.++||||
T Consensus       157 --------------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS  186 (258)
T d1k2pa_         157 --------------------------------------------------SSVGSKFPVRWSPPEVLMYSKFSSKSDIWA  186 (258)
T ss_dssp             --------------------------------------------------CCCCSCCCGGGCCHHHHHHCCCCHHHHHHH
T ss_pred             --------------------------------------------------EECCCCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf             --------------------------------------------------524657887757807863799885210336


Q ss_pred             HHHHHHHHHC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHCC
Q ss_conf             8899999732----8999943467767530378990222159035999997159999999898888619
Q 002736          258 LGVLLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQS  322 (886)
Q Consensus       258 lGvil~ell~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (886)
                      |||++|||+|    ||... ........+.....++.+...++.+.+|+.+||..||.+|||+.++++|
T Consensus       187 ~G~~l~el~t~g~~Pf~~~-~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         187 FGVLMWEIYSLGKMPYERF-TNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             HHHHHHHHHTTSCCTTTTS-CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             CCHHHHHHHHCCCCCCCCC-CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHH
T ss_conf             4324673975599998899-9999999998079789965465999999999766897689399999987

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=262.14  Aligned_cols=204  Identities=16%  Similarity=0.146  Sum_probs=165.1

Q ss_pred             CCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCC---------------CCCCCHHHH
Q ss_conf             2222357344204-65456789977633443358962999851-785234450499---------------998686899
Q 002736           22 ELRKHSDGVELTH-GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------------KRSVDVYEC   84 (886)
Q Consensus        22 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~---------------~~~~~~~~~   84 (886)
                      .|.+|.  ..+.+ .+|+|++.+++ +|.   ..+.++++||| .|++|.++|.+.               ...+++..+
T Consensus        56 ~~~~E~--~~l~~l~~HpnIv~~~~-~~~---~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  129 (309)
T d1fvra_          56 DFAGEL--EVLCKLGHHPNIINLLG-ACE---HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL  129 (309)
T ss_dssp             HHHHHH--HHHTTCCCCTTBCCEEE-EEE---ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHH
T ss_pred             HHHHHH--HHHHHCCCCCCEEEEEE-EEE---CCCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf             999999--99986228998836788-884---187369999802898699998640355555123101234578999999


Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99999999999951014704225687604532488534530776679999963112222234446889999730333321
Q 002736           85 LHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRT  164 (886)
Q Consensus        85 ~~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (886)
                      .++++||+.||.|+|++||+||||||+|||++..+.+|++|||+++......                            
T Consensus       130 ~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~----------------------------  181 (309)
T d1fvra_         130 LHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV----------------------------  181 (309)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEEC----------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCC----------------------------
T ss_conf             9999999999876630895455505204898688763874344322444223----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCC
Q ss_conf             01123443456888853556334467766763211257554444444443000002378988503320246620035132
Q 002736          165 RLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEEL  244 (886)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~  244 (886)
                                                                                     ......||..|+|||.+
T Consensus       182 ---------------------------------------------------------------~~~~~~gt~~y~aPE~l  198 (309)
T d1fvra_         182 ---------------------------------------------------------------KKTMGRLPVRWMAIESL  198 (309)
T ss_dssp             ---------------------------------------------------------------CC----CCTTTCCHHHH
T ss_pred             ---------------------------------------------------------------CCCCEECCCCCCCHHHH
T ss_conf             ---------------------------------------------------------------45530137755553875


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             79998864651018899999732---899994346776753037899022215903599999715999999989888861
Q 002736          245 AGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       245 ~~~~~t~~sDIwSlGvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      .+..|+.++|||||||++|||++   |++........+..+.....++.+...++.+.+|+.+||..||++|||+.++++
T Consensus       199 ~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~  278 (309)
T d1fvra_         199 NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  278 (309)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             26999962215313889999983689999999999999999826888887667899999999976789668949999999


Q ss_pred             C
Q ss_conf             9
Q 002736          322 S  322 (886)
Q Consensus       322 h  322 (886)
                      +
T Consensus       279 ~  279 (309)
T d1fvra_         279 S  279 (309)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.8e-40  Score=264.15  Aligned_cols=208  Identities=19%  Similarity=0.304  Sum_probs=160.3

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             57344204654567899776334433-58962999851-78523445049999868689999999999999951014704
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEA-AIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIV  104 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~gii  104 (886)
                      ++...+...+|+|++.+++ ++..+. ....+|++||| .|++|.+++... +.+++.+++.|++||+.||.|||++||+
T Consensus        56 ~E~~~l~~~~hpniv~~~~-~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~-~~l~~~~~~~i~~qi~~al~~lH~~~ii  133 (277)
T d1o6ya_          56 REAQNAAALNHPAIVAVYD-TGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQNGII  133 (277)
T ss_dssp             HHHHHHHTCCCTTBCCEEE-EEEEECSSSEEEEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHCCCCCCCCCCC-EEEECCCCCCEEEEEEECCCCCEEHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999998569998873114-3543268876699999778898710112035-8999999999999999999999857952


Q ss_pred             ECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22568760453248853453077667999996311222223444688999973033332101123443456888853556
Q 002736          105 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEA  184 (886)
Q Consensus       105 HrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (886)
                      ||||||+|||++..+.++++|||.+.........                                              
T Consensus       134 HrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~----------------------------------------------  167 (277)
T d1o6ya_         134 HRDVKPANIMISATNAVKVMDFGIARAIADSGNS----------------------------------------------  167 (277)
T ss_dssp             CCCCSGGGEEEETTSCEEECCCTTCEECC---------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCC----------------------------------------------
T ss_conf             7634675566575432010034443221235443----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             33446776676321125755444444444300000237898850332024662003513279998864651018899999
Q 002736          185 SCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFE  264 (886)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~e  264 (886)
                                                               .......+||+.|+|||++.+..|++++|||||||++||
T Consensus       168 -----------------------------------------~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilye  206 (277)
T d1o6ya_         168 -----------------------------------------VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE  206 (277)
T ss_dssp             ----------------------------------------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CCCCCCCCCCCCCCCHHHHCCCCCCCCEECCCCHHHHHH
T ss_conf             -----------------------------------------333464257624369999839999966320265289999


Q ss_pred             HHC---CCCCCCHHHHHHHHHCCCCCCHHH--HCCCHHHHHHHHHCCCCCCCCCC-CHHHHHCCCC
Q ss_conf             732---899994346776753037899022--21590359999971599999998-9888861988
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHRVLPPQL--LLKFPKEASFCLWLLHPEPSGRP-KMGELLQSEF  324 (886)
Q Consensus       265 ll~---pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~Rp-t~~eil~h~~  324 (886)
                      |++   ||............+.....++..  ...++.+.+|+.+||.+||.+|| ++++++ ++|
T Consensus       207 lltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~-~~l  271 (277)
T d1o6ya_         207 VLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR-ADL  271 (277)
T ss_dssp             HHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHH-HHH
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHCCCCHHHCHHHHHHHH-HHH
T ss_conf             97697998996999999999846999971003478999999999986679767773999999-999

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-39  Score=258.29  Aligned_cols=209  Identities=15%  Similarity=0.186  Sum_probs=158.1

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             5734420465456789977633443---3589629998517852344504999986868999999999999995101470
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENE---AAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGI  103 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~gi  103 (886)
                      ++...+.+.+|++++.+++ ++...   .....+++++++.|++|.+++..  +.+++.+++.+++||+.||.|||++||
T Consensus        66 ~Ei~il~~l~h~~iv~~~~-~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~--~~l~e~~~~~i~~qil~aL~~LH~~gi  142 (348)
T d2gfsa1          66 RELRLLKHMKHENVIGLLD-VFTPARSLEEFNDVYLVTHLMGADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHSADI  142 (348)
T ss_dssp             HHHHHHHHCCCTTBCCCSE-EECSCSSTTTCCCCEEEEECCSEEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCEEEEEE-EEEECCCCCCCCEEEEEEEECCCCHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999998668987425999-9963464566864999996258862320022--453099999999999999999973887


Q ss_pred             EECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             42256876045324885345307766799999631122222344468899997303333210112344345688885355
Q 002736          104 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSE  183 (886)
Q Consensus       104 iHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (886)
                      +||||||+|||++.++.+|++|||++......                                                
T Consensus       143 iHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~------------------------------------------------  174 (348)
T d2gfsa1         143 IHRDLKPSNLAVNEDCELKILDFGLARHTDDE------------------------------------------------  174 (348)
T ss_dssp             CCCCCCGGGEEECTTCCEEECCC----CCTGG------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC------------------------------------------------
T ss_conf             65166776334554322001321000125754------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCC-CCCCCCCCHHHHHH
Q ss_conf             63344677667632112575544444444430000023789885033202466200351327999-88646510188999
Q 002736          184 ASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLL  262 (886)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~t~~sDIwSlGvil  262 (886)
                                                                   .....|++.|+|||++.+.. ++.++|||||||++
T Consensus       175 ---------------------------------------------~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l  209 (348)
T d2gfsa1         175 ---------------------------------------------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIM  209 (348)
T ss_dssp             ---------------------------------------------GSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHH
T ss_pred             ---------------------------------------------CCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             ---------------------------------------------44434543555835533775678551243205899


Q ss_pred             HHHHC---CCCCCCHHHHHHHHHCCCCC-----------------------------CHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf             99732---89999434677675303789-----------------------------90222159035999997159999
Q 002736          263 FELFC---PFSTGEEKTRTMSSLRHRVL-----------------------------PPQLLLKFPKEASFCLWLLHPEP  310 (886)
Q Consensus       263 ~ell~---pf~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~li~~~L~~dP  310 (886)
                      |+|++   ||............+.....                             ...+...++.+.+|+.+||..||
T Consensus       210 ~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP  289 (348)
T d2gfsa1         210 AELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDS  289 (348)
T ss_dssp             HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSG
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCH
T ss_conf             99976889978898899999999730799757732001024454443035578755566267899999999999775883


Q ss_pred             CCCCCHHHHHCCCCCCCCCCC
Q ss_conf             999898888619887798674
Q 002736          311 SGRPKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       311 ~~Rpt~~eil~h~~~~~~~~~  331 (886)
                      .+|||+.|+|+||||.....+
T Consensus       290 ~~R~ta~elL~Hp~f~~~~~~  310 (348)
T d2gfsa1         290 DKRITAAQALAHAYFAQYHDP  310 (348)
T ss_dssp             GGSCCHHHHHTSGGGTTTCCT
T ss_pred             HHCCCHHHHHCCHHHCCCCCC
T ss_conf             459389998559954879998

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=256.49  Aligned_cols=209  Identities=18%  Similarity=0.206  Sum_probs=156.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCC---CCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             57344204654567899776334433---589629998517852344504999986868999999999999995101470
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEA---AIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGI  103 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~gi  103 (886)
                      ++...+.+.+|++++.+++ ++..+.   ....+|++|||.+++|.+.+.   ..+++.+++.+++||+.||.|||++||
T Consensus        65 ~Ei~il~~l~hpnIv~~~~-~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~---~~~~~~~i~~~~~qil~gl~~LH~~gi  140 (355)
T d2b1pa1          65 RELVLMKCVNHKNIISLLN-VFTPQKTLEEFQDVYLVMELMDANLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAGI  140 (355)
T ss_dssp             HHHHHHHHCCCTTBCCCSE-EECSCCSTTTCCEEEEEEECCSEEHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCEEEEEE-EEECCCCCCCCCEEEEEEECCCHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999998648987648998-970256434576269998414467787650---389999999999999999988652211


Q ss_pred             EECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             42256876045324885345307766799999631122222344468899997303333210112344345688885355
Q 002736          104 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSE  183 (886)
Q Consensus       104 iHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (886)
                      +||||||+|||++.++.+|++|||+++......                                               
T Consensus       141 iHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~-----------------------------------------------  173 (355)
T d2b1pa1         141 IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-----------------------------------------------  173 (355)
T ss_dssp             CCSCCCGGGEEECTTCCEEECCCCC-------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCEEEECHHHHHCCCCCC-----------------------------------------------
T ss_conf             245677632113654431320102321146665-----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             63344677667632112575544444444430000023789885033202466200351327999886465101889999
Q 002736          184 ASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLF  263 (886)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~  263 (886)
                                                                  ......+|+.|+|||++.+..++.++||||+||++|
T Consensus       174 --------------------------------------------~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~  209 (355)
T d2b1pa1         174 --------------------------------------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG  209 (355)
T ss_dssp             ---------------------------------------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHH
T ss_pred             --------------------------------------------CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf             --------------------------------------------533221465555813314777787743335662578


Q ss_pred             HHHC---CCCCCCHHHHHHHHHCC---------------------CC-------------------CCHHHHCCCHHHHH
Q ss_conf             9732---89999434677675303---------------------78-------------------99022215903599
Q 002736          264 ELFC---PFSTGEEKTRTMSSLRH---------------------RV-------------------LPPQLLLKFPKEAS  300 (886)
Q Consensus       264 ell~---pf~~~~~~~~~~~~~~~---------------------~~-------------------~~~~~~~~~~~~~~  300 (886)
                      ||++   ||............+..                     ..                   ........++.+.+
T Consensus       210 ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~d  289 (355)
T d2b1pa1         210 EMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARD  289 (355)
T ss_dssp             HHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             98659899888977889999997205898799987656677776417543566642126433354321013337999999


Q ss_pred             HHHHCCCCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf             999715999999989888861988779867
Q 002736          301 FCLWLLHPEPSGRPKMGELLQSEFLNEPRD  330 (886)
Q Consensus       301 li~~~L~~dP~~Rpt~~eil~h~~~~~~~~  330 (886)
                      |+.+||.+||++|||++|+|+||||+....
T Consensus       290 ll~~mL~~dP~~R~ta~elL~Hpw~~~~~~  319 (355)
T d2b1pa1         290 LLSKMLVIDPAKRISVDDALQHPYINVWYD  319 (355)
T ss_dssp             HHHHHSCSSTTTSCCHHHHHTSTTTGGGCC
T ss_pred             HHHHHCCCCHHHCCCHHHHHCCCCCCCCCC
T ss_conf             999987699457908999966942087888

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=254.86  Aligned_cols=195  Identities=17%  Similarity=0.177  Sum_probs=158.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCC---------------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             65456789977633443358962999851-7852344504999---------------9868689999999999999951
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPK---------------RSVDVYECLHIFRQIVEIVYAA   98 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~---------------~~~~~~~~~~i~~qi~~~l~~l   98 (886)
                      ..|+|++.+++ +|.+   .+.++++||| .+++|.++|....               ..+++.+++.+++||+.||.|+
T Consensus        76 ~~HpnIv~~~~-~~~~---~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~yl  151 (299)
T d1fgka_          76 GKHKNIINLLG-ACTQ---DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL  151 (299)
T ss_dssp             CCCTTBCCEEE-EECS---SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCC-CCCC---CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             39996973465-2201---8868999973699909999986067764322233457434679999999999999999876


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             01470422568760453248853453077667999996311222223444688999973033332101123443456888
Q 002736           99 HSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT  178 (886)
Q Consensus        99 Hs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (886)
                      |++||+||||||+|||++.++.+|++|||+++........                                        
T Consensus       152 H~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~----------------------------------------  191 (299)
T d1fgka_         152 ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY----------------------------------------  191 (299)
T ss_dssp             HHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTT----------------------------------------
T ss_pred             HHCCEEEEEECCCCEEECCCCCEEECCCHHHCCCCCCCCC----------------------------------------
T ss_conf             6379786302210224547897676221110113555554----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHH
Q ss_conf             85355633446776676321125755444444444300000237898850332024662003513279998864651018
Q 002736          179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRL  258 (886)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSl  258 (886)
                                                                 .     ......|++.|+|||.+.+.+|+.++|||||
T Consensus       192 -------------------------------------------~-----~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~  223 (299)
T d1fgka_         192 -------------------------------------------K-----KTTNGRLPVKWMAPEALFDRIYTHQSDVWSF  223 (299)
T ss_dssp             -------------------------------------------C-----CCTTSCCGGGGSCHHHHHHCCCCHHHHHHHH
T ss_pred             -------------------------------------------C-----CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             -------------------------------------------3-----1466788846632667517988825554775


Q ss_pred             HHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             899999732---899994346776753037899022215903599999715999999989888861
Q 002736          259 GVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       259 Gvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ||++|||++   |++...........+..+..++.+...++.+.+|+.+||..||.+|||+.|+++
T Consensus       224 Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         224 GVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             HHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             888887401798989999999999999728888987435299999999976679767939999999

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-34  Score=226.79  Aligned_cols=266  Identities=16%  Similarity=0.222  Sum_probs=203.0

Q ss_pred             CEEEEEECCC--EEEEEECCCCCCCC-CCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCCCCCC-CCCCEEEECCC
Q ss_conf             2478641374--48899205733589-99889999968--9998999968991999975864475665-33334872378
Q 002736          544 LCKYLSFSKL--RVKADLNQGDLLNS-SNLVCSLSFDR--DGELFAAAGVNKKIKVFECDAIINENRD-IHYPVVEMASR  617 (886)
Q Consensus       544 ~~~~~~~~~~--~~~~~l~~~~l~~h-~~~V~si~fs~--dg~~latg~~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~  617 (886)
                      .++.|+....  .....+     .+| ...|++++|+|  ++.+||+|+.||+|++|++......... .........+.
T Consensus        41 ~i~~~~~~~~~~~~~~~~-----~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~  115 (325)
T d1pgua1          41 FVRCLDDGDSKVPPVVQF-----TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA  115 (325)
T ss_dssp             EEEECCSSCCSSCSEEEE-----CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred             EEEEEECCCCCCCCEEEE-----ECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf             999976888876502899-----078999889999811799979999948997798540588621565100254113656


Q ss_pred             CCEEEEEEECCCCCEEEEEC--CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHH
Q ss_conf             98016998079998699962--8991999987886278881235874999998139999899981899499994750344
Q 002736          618 SKLSSICWNSYIKSQIASSN--FEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       618 ~~I~~i~~~~~~~~~l~s~s--~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~  695 (886)
                      ++|.+++|++ ++..+++++  .++.+.+|+..+++.+..+.+|...|+++.|+|..+..+++++.|+.+++|+....  
T Consensus       116 ~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~--  192 (325)
T d1pgua1         116 GPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--  192 (325)
T ss_dssp             SCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--
T ss_pred             CCEEEEEECC-CCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC--
T ss_conf             7377999899-9882201001244047888502331100120012343211112343206888621112211112211--


Q ss_pred             HHCCCCEEEEE----ECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCE----EEEEECCCCEE
Q ss_conf             42047303445----32798699998189996899993899099996589983469991279986----79996499989
Q 002736          696 LLHLGVSIGTI----KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV----SYVKFVDATTL  767 (886)
Q Consensus       696 ~~~~~~~~~~~----~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V----~~i~f~~~~~l  767 (886)
                           ......    .+...|.+++|+|+.+.++++++.|+.|++||+++++. +..+.+|...+    .++.|+++.+|
T Consensus       193 -----~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~~~v~~~~~s~~~~dg~~l  266 (325)
T d1pgua1         193 -----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWLDSQKF  266 (325)
T ss_dssp             -----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEESSSSEE
T ss_pred             -----CCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCEEEEECCCCCEE
T ss_conf             -----000000001577775277630345310000112332101343001222-11111111111110000003689999


Q ss_pred             EEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCC--EEEEEEECC-CCEEEEECCCCCEEEEEC
Q ss_conf             99978994999947999766569881386067885--349999139-999999849992999713
Q 002736          768 VSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV--KNFVGLSVW-DGYVATGSETNEVFVYHK  829 (886)
Q Consensus       768 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~v~~sp~-~~~lasgs~dg~i~iwd~  829 (886)
                      ++++.|++|++||++++      +++..+..|...  +..+++.+. +.+|++||.||.|++||+
T Consensus       267 ~s~s~D~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         267 ATVGADATIRVWDVTTS------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSEEEEEETTTT------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEECCCEEEEEECCCC------CEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf             99958993999999999------788999954874067699999889999999979999999979

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-34  Score=229.36  Aligned_cols=281  Identities=17%  Similarity=0.306  Sum_probs=212.2

Q ss_pred             CCCCCCC-EEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCE
Q ss_conf             3589998-899999689998999968991999975864475665333348723789801699807999869996289919
Q 002736          564 LLNSSNL-VCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVV  642 (886)
Q Consensus       564 l~~h~~~-V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V  642 (886)
                      |.||.+. ++|+.|  |+++||||+.|+.|+|||+.+..       .......|.+.|.+++|++  ++.|++++.||+|
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~--~~~l~s~s~D~~i   76 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAH--GGILVSGSTDRTV   76 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEET--TTEEEEEETTCCE
T ss_pred             ECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCC-------EEEEEECCCCCEEEEEECC--CCEEEEEECCCCC
T ss_conf             89837886999998--89999999189909999899993-------9999978999889999869--9999999645244


Q ss_pred             EEEECCCCEEEEEECCC--CCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCE----------------EE
Q ss_conf             99987886278881235--8749999981399998999818994999947503444204730----------------34
Q 002736          643 QVWDVSRSQVLTEMREH--ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVS----------------IG  704 (886)
Q Consensus       643 ~iWd~~~~~~~~~~~~h--~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~----------------~~  704 (886)
                      ++|+....+........  ........+.+ ++..+++++.|+.|++|++............                ..
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEE
T ss_conf             321111111111110011111111111112-3220455438886899985677300124652000100000112340121


Q ss_pred             EE-ECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECC
Q ss_conf             45-32798699998189996899993899099996589983469991279986799964-99989999789949999479
Q 002736          705 TI-KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLS  782 (886)
Q Consensus       705 ~~-~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~  782 (886)
                      .. .+...+.  .+.++ +++++++..|+.|++||+++.+ .+....++...+.++.|+ ++..+++++.|++|++||+.
T Consensus       156 ~~~~~~~~v~--~~~~~-~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         156 VLRGHMASVR--TVSGH-GNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             EEECCSSCEE--EEEEE-TTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             EEEECCCCCC--CCCCC-CCEEEEECCCCEEEEEECCCCC-CEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
T ss_conf             0110022210--00025-6334421144204443013110-001100012332111111210021012456368763012


Q ss_pred             CCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEE-E
Q ss_conf             997665698813860678853499991399999998499929997139998610103579999998855667995999-9
Q 002736          783 MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISS-V  861 (886)
Q Consensus       783 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-v  861 (886)
                      ++      .++..+.+|...|+++.+++  ++|++|+.||.|++||+..........               ...+.+ .
T Consensus       232 ~~------~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~  288 (355)
T d1nexb2         232 NG------ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYH---------------HTNLSAIT  288 (355)
T ss_dssp             TC------CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEE---------------CTTCCCCC
T ss_pred             CC------CCCCCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEECCCC---------------CCCCEEEE
T ss_conf             21------11111111111111112321--003332011111111111111000124---------------68822999


Q ss_pred             EECCCCCCEEEEEECCCCEEEEEE
Q ss_conf             990699959999847997999970
Q 002736          862 CWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       862 ~~~~~~~~~lvs~~~dg~I~iw~l  885 (886)
                      ++.+++. + +++++||.|++|++
T Consensus       289 ~~~~~~~-~-l~~g~d~~i~vwd~  310 (355)
T d1nexb2         289 TFYVSDN-I-LVSGSENQFNIYNL  310 (355)
T ss_dssp             EEEECSS-E-EEEEETTEEEEEET
T ss_pred             EECCCCC-E-EEEEECCEEEEEEC
T ss_conf             9849998-9-99980997999999

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6e-39  Score=258.56  Aligned_cols=205  Identities=15%  Similarity=0.108  Sum_probs=163.1

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCC-----------------------CCC
Q ss_conf             22235734420465456789977633443358962999851-785234450499-----------------------998
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-----------------------KRS   78 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~-----------------------~~~   78 (886)
                      |+.|  ...+.+.+|+|++.+++ +|.+   ...++++||+ .+++|.++|...                       ...
T Consensus        63 ~~~E--~~il~~l~h~niv~~~~-~~~~---~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (301)
T d1lufa_          63 FQRE--AALMAEFDNPNIVKLLG-VCAV---GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPP  136 (301)
T ss_dssp             HHHH--HHHHHTCCCTTBCCEEE-EECS---SSSCEEEEECCTTCBHHHHHHHTCC----------------------CC
T ss_pred             HHHH--HHHHHHCCCCCCCCCEE-EECC---CCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf             9999--99999668997655246-6605---9803899981589929999985275542100001110012103467889


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             68689999999999999951014704225687604532488534530776679999963112222234446889999730
Q 002736           79 VDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLD  158 (886)
Q Consensus        79 ~~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (886)
                      +++..++.|++||+.||.|+|++||+||||||+|||++.++.+|++|||+++........                    
T Consensus       137 l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~--------------------  196 (301)
T d1lufa_         137 LSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY--------------------  196 (301)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCB--------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCEEECCCHHHEECCCCCCC--------------------
T ss_conf             899999999999999855413578685488401168989992898331442113677641--------------------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE
Q ss_conf             33332101123443456888853556334467766763211257554444444443000002378988503320246620
Q 002736          159 MLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWY  238 (886)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  238 (886)
                                                                                          ...+...|++.|
T Consensus       197 --------------------------------------------------------------------~~~~~~~~~~~y  208 (301)
T d1lufa_         197 --------------------------------------------------------------------KADGNDAIPIRW  208 (301)
T ss_dssp             --------------------------------------------------------------------C----CCBCGGG
T ss_pred             --------------------------------------------------------------------CCCCCCCCCCCC
T ss_conf             --------------------------------------------------------------------115777767676


Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             03513279998864651018899999732---899994346776753037899022215903599999715999999989
Q 002736          239 ASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPK  315 (886)
Q Consensus       239 ~aPE~~~~~~~t~~sDIwSlGvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt  315 (886)
                      +|||.+.+.+||.++|||||||++|||++   |++........+..+.....++.+...++.+.+|+.+||..+|.+|||
T Consensus       209 ~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt  288 (301)
T d1lufa_         209 MPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPS  288 (301)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CCHHHHCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCC
T ss_conf             79899726889805630252362999980689999998999999999739978887325299999999974889657939


Q ss_pred             HHHHHC
Q ss_conf             888861
Q 002736          316 MGELLQ  321 (886)
Q Consensus       316 ~~eil~  321 (886)
                      +.|+++
T Consensus       289 ~~ev~~  294 (301)
T d1lufa_         289 FCSIHR  294 (301)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=260.11  Aligned_cols=216  Identities=15%  Similarity=0.101  Sum_probs=168.0

Q ss_pred             CCCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCC-CCCCCHHH
Q ss_conf             542310258999--83222235734420465456789977633443358962999851-785234450499-99868689
Q 002736            8 GERFGVRGDDSN--DFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-KRSVDVYE   83 (886)
Q Consensus         8 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~-~~~~~~~~   83 (886)
                      |..++++--...  ...|++|...  +.+.+|+|++.+++ +|.+  ..+.++++||| .+++|.++|.+. ...+++..
T Consensus        30 ~~~vAvK~i~~~~~~~~~~~E~~~--l~~l~HpnIv~~~g-~~~~--~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~  104 (262)
T d1byga_          30 GNKVAVKCIKNDATAQAFLAEASV--MTQLRHSNLVQLLG-VIVE--EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC  104 (262)
T ss_dssp             TEEEEEEECCCCC--HHHHHTHHH--HTTCCCTTBCCEEE-EECC--C--CCEEEECCCTTEEHHHHHHHHHHHHCCHHH
T ss_pred             CEEEEEEEECCHHHHHHHHHHHHH--HHHCCCCCEEEEEE-EEEE--CCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHH
T ss_conf             909999998857779999999999--98678989854987-8872--389289999636999899998745788889999


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             99999999999995101470422568760453248853453077667999996311222223444688999973033332
Q 002736           84 CLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRR  163 (886)
Q Consensus        84 ~~~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (886)
                      ++.++.||+.||.|||+++|+||||||+||+++.++.+|++|||+++.....                            
T Consensus       105 ~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~----------------------------  156 (262)
T d1byga_         105 LLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST----------------------------  156 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------------------------
T ss_pred             HHHHHHHHHHHCCCCCCCCEECCCCCHHHHEECCCCCEEECCCCCCEECCCC----------------------------
T ss_conf             9999999985232113376553666567601468997763245600344787----------------------------


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC
Q ss_conf             10112344345688885355633446776676321125755444444444300000237898850332024662003513
Q 002736          164 TRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEE  243 (886)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~  243 (886)
                                                                                       .....++..|+|||+
T Consensus       157 -----------------------------------------------------------------~~~~~~~~~y~aPE~  171 (262)
T d1byga_         157 -----------------------------------------------------------------QDTGKLPVKWTAPEA  171 (262)
T ss_dssp             ----------------------------------------------------------------------CCTTTSCHHH
T ss_pred             -----------------------------------------------------------------CCCCCCCCCCCCHHH
T ss_conf             -----------------------------------------------------------------765566646778178


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             279998864651018899999732---89999434677675303789902221590359999971599999998988886
Q 002736          244 LAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELL  320 (886)
Q Consensus       244 ~~~~~~t~~sDIwSlGvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil  320 (886)
                      +.+..++.++|||||||++|||+|   |++...........+.....++.+...++.+.+|+.+||..||.+|||+.+++
T Consensus       172 l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~  251 (262)
T d1byga_         172 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLR  251 (262)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHH
T ss_conf             72798885887775799999999789999999999999999980899999765799999999997566976893999999


Q ss_pred             C
Q ss_conf             1
Q 002736          321 Q  321 (886)
Q Consensus       321 ~  321 (886)
                      +
T Consensus       252 ~  252 (262)
T d1byga_         252 E  252 (262)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=256.83  Aligned_cols=206  Identities=16%  Similarity=0.076  Sum_probs=161.5

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             222235734420465456789977633443358962999851-7852344504999986868999999999999995101
Q 002736           22 ELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      .|.+|.  ..+...+|+|++.+++ +|.+    +.++++||| .+++|.+++......+++..++.++.||+.||.|||+
T Consensus        57 ~~~~Ei--~~l~~l~H~nIv~~~g-~~~~----~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~  129 (273)
T d1u46a_          57 DFIREV--NAMHSLDHRNLIRLYG-VVLT----PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLES  129 (273)
T ss_dssp             HHHHHH--HHHHHCCCTTBCCEEE-EECS----SSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHCCCCCEEEEEE-EEEE----CCHHEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999--9998689999878987-7740----10011465423861254442126899999999999999999987521


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             47042256876045324885345307766799999631122222344468899997303333210112344345688885
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTND  180 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (886)
                      +||+||||||+||+++.++.+|++|||+++.........                                         
T Consensus       130 ~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~-----------------------------------------  168 (273)
T d1u46a_         130 KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY-----------------------------------------  168 (273)
T ss_dssp             TTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEE-----------------------------------------
T ss_pred             CCEEEEEECHHHHCCCCCCCEEECCCHHHHHCCCCCCCC-----------------------------------------
T ss_conf             787520566888156556543325611555303588752-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             35563344677667632112575544444444430000023789885033202466200351327999886465101889
Q 002736          181 LSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGV  260 (886)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGv  260 (886)
                                                                    .......|+.+|+|||++.+..++.++|||||||
T Consensus       169 ----------------------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gv  202 (273)
T d1u46a_         169 ----------------------------------------------VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGV  202 (273)
T ss_dssp             ----------------------------------------------EC-----CCGGGCCHHHHHHCEEEHHHHHHHHHH
T ss_pred             ----------------------------------------------EECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHH
T ss_conf             ----------------------------------------------6547632573107999983799994215661489


Q ss_pred             HHHHHHC----CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             9999732----899994346776753037899022215903599999715999999989888861
Q 002736          261 LLFELFC----PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       261 il~ell~----pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ++|||++    ||..................++.+...++.+.+++.+||..||.+|||+.+++.
T Consensus       203 il~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         203 TLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             HHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             99999968999999969999999998479999985445399999999976889667929999999

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=218.52  Aligned_cols=287  Identities=17%  Similarity=0.309  Sum_probs=225.3

Q ss_pred             EEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEEC
Q ss_conf             64137448899205733589998899999689998999968991999975864475665333348723789801699807
Q 002736          548 LSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNS  627 (886)
Q Consensus       548 ~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~  627 (886)
                      |+..+.+..+.|     .||.+.|.+ +++++|++||||+.||.|+|||+.+...       ......|...|.+++|++
T Consensus         1 W~~~~~~~~~~l-----~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~-------~~~~~~h~~~V~~v~~~~   67 (342)
T d2ovrb2           1 WRRGELKSPKVL-----KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------LRTLVGHTGGVWSSQMRD   67 (342)
T ss_dssp             HHHSCCCCCEEE-----ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------EEECCCCSSCEEEEEEET
T ss_pred             CCCCCCCCCEEE-----CCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCE-------EEEEECCCCCEEEEEECC
T ss_conf             989988758898-----886875099-9997899999991899099998999979-------999948899989999479


Q ss_pred             CCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEE
Q ss_conf             99986999628991999987886278881235874999998139999899981899499994750344420473034453
Q 002736          628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK  707 (886)
Q Consensus       628 ~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~  707 (886)
                         +++++++.|+.+++|+............+...+......   ...+..+..|+.+.+|+..+       +.....+.
T Consensus        68 ---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~-------~~~~~~~~  134 (342)
T d2ovrb2          68 ---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIET-------GQCLHVLM  134 (342)
T ss_dssp             ---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSS-------CCEEEEEE
T ss_pred             ---CCCCCCEECCCCCCCCCCCCCCEECCCCCCEEEEEEECC---CCCCCCCCCCEEEEEEECCC-------CCCEEEEE
T ss_conf             ---863210000011111111000000012333047652024---65221234440378740355-------63001110


Q ss_pred             CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCC
Q ss_conf             27986999981899968999938990999965899834699912799867999649998999978994999947999766
Q 002736          708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSR  787 (886)
Q Consensus       708 ~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~l~sgs~Dg~I~iwd~~~~~~~  787 (886)
                      ......... .+. ...+++++.|+.|++||.+... .+..+.+|...+..+.+ ++..+++++.||.|++||++..   
T Consensus       135 ~~~~~~~~~-~~~-~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~d~~~~---  207 (342)
T d2ovrb2         135 GHVAAVRCV-QYD-GRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETG---  207 (342)
T ss_dssp             CCSSCEEEE-EEC-SSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTC---
T ss_pred             CCCCCCEEE-CCC-CCEEEEECCCCEEEEEECCCCE-EEEEECCCCCCCCCCCC-CCCEEEEEECCCEEEEEECCCC---
T ss_conf             011110000-013-3302433589869995252343-66787275444210068-9999999958993999525565---


Q ss_pred             CCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             56988138606788534999913999999984999299971399986101035799999988556679959999990699
Q 002736          788 VIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQS  867 (886)
Q Consensus       788 ~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~  867 (886)
                         .++..+.+|...+.++.+++  +++++|+.|+.|++|+....+....+..          ...|...+.++++++  
T Consensus       208 ---~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--  270 (342)
T d2ovrb2         208 ---NCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQG----------PNKHQSAVTCLQFNK--  270 (342)
T ss_dssp             ---CEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECS----------TTSCSSCEEEEEECS--
T ss_pred             ---EEEEEECCCCCCEEEEECCC--CEEEEECCCCEEEEEECCCCCCCCCCCC----------CCEEEECEEECCCCC--
T ss_conf             ---36567416653205770689--9999974898899986554422111221----------000110100001379--


Q ss_pred             CCEEEEEECCCCEEEEEE
Q ss_conf             959999847997999970
Q 002736          868 SNTLVAANSSGNIKILEM  885 (886)
Q Consensus       868 ~~~lvs~~~dg~I~iw~l  885 (886)
                      . .+++|+.||+|++|++
T Consensus       271 ~-~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         271 N-FVITSSDDGTVKLWDL  287 (342)
T ss_dssp             S-EEEEEETTSEEEEEET
T ss_pred             C-EEEEECCCCEEEEEEC
T ss_conf             8-4499908998999999

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-38  Score=251.14  Aligned_cols=210  Identities=15%  Similarity=0.155  Sum_probs=159.1

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             5734420465456789977633443358962999851-785234450499998686899999999999999510147042
Q 002736           27 SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVV  105 (886)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiH  105 (886)
                      .+...+.+-+|+|++.++. ++.   ..+.+++++++ .|++|..++.. .+.+++.++..+++|++.||+|||++||+|
T Consensus        50 ~E~~il~~l~h~niv~~~~-~~~---~~~~~~iv~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~q~~~aL~~lH~~~IvH  124 (292)
T d1unla_          50 REICLLKELKHKNIVRLHD-VLH---SDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRNVLH  124 (292)
T ss_dssp             HHHHHHTTCCCTTBCCEEE-EEE---CSSEEEEEEECCSEEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHCCCCCEEEECC-CCC---CCCCEEEEEEECCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             9999998567578882135-444---44311588630233222112123-565403678999999999987743399860


Q ss_pred             CCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             25687604532488534530776679999963112222234446889999730333321011234434568888535563
Q 002736          106 HNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       106 rDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (886)
                      |||||+|||++..+.+|++|||.++....+..                                                
T Consensus       125 rDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~------------------------------------------------  156 (292)
T d1unla_         125 RDLKPQNLLINRNGELKLANFGLARAFGIPVR------------------------------------------------  156 (292)
T ss_dssp             CCCSGGGEEECTTCCEEECCCTTCEECCSCCS------------------------------------------------
T ss_pred             ECCCCCCCCCCCCCCEEEEECCHHHCCCCCCC------------------------------------------------
T ss_conf             01467612113378266520460110468875------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCC-CCCCCCCCHHHHHHHH
Q ss_conf             344677667632112575544444444430000023789885033202466200351327999-8864651018899999
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP-VSCASDIYRLGVLLFE  264 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~-~t~~sDIwSlGvil~e  264 (886)
                                                                ......++.+|+|||++.+.. ++.++|||||||++||
T Consensus       157 ------------------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~e  194 (292)
T d1unla_         157 ------------------------------------------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAE  194 (292)
T ss_dssp             ------------------------------------------CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHH
T ss_pred             ------------------------------------------CCEEECCCCCHHHHHHHCCCCCCCCHHHCCCCCHHHHH
T ss_conf             ------------------------------------------10010344310146675069888804440265418899


Q ss_pred             HHC---CCCCCCHHHHHHHHHCCC----------------------------CCCHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             732---899994346776753037----------------------------8990222159035999997159999999
Q 002736          265 LFC---PFSTGEEKTRTMSSLRHR----------------------------VLPPQLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       265 ll~---pf~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      |++   ||+........+..+...                            .........++.+.+|+.+||++||.+|
T Consensus       195 ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R  274 (292)
T d1unla_         195 LANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQR  274 (292)
T ss_dssp             HTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGS
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHC
T ss_conf             85189999889999999999986118997355134432221133444544310433065689999999999864996689


Q ss_pred             CCHHHHHCCCCCCCCCCC
Q ss_conf             898888619887798674
Q 002736          314 PKMGELLQSEFLNEPRDS  331 (886)
Q Consensus       314 pt~~eil~h~~~~~~~~~  331 (886)
                      ||++|+|+||||++..++
T Consensus       275 ~sa~e~L~Hp~f~~~~~~  292 (292)
T d1unla_         275 ISAEEALQHPYFSDFCPP  292 (292)
T ss_dssp             CCHHHHTTSGGGSSCSCC
T ss_pred             CCHHHHHCCHHHCCCCCC
T ss_conf             099999649534079897

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-38  Score=250.84  Aligned_cols=195  Identities=15%  Similarity=0.184  Sum_probs=155.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCC-----------------CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             65456789977633443358962999851-785234450499-----------------998686899999999999999
Q 002736           35 GDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP-----------------KRSVDVYECLHIFRQIVEIVY   96 (886)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~-----------------~~~~~~~~~~~i~~qi~~~l~   96 (886)
                      .+|+|++.+++ +|.   ..+.++++||| .+++|.++|.+.                 ...+++.+++.|+.||+.||.
T Consensus        84 ~~HpnIv~~~g-~~~---~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~  159 (311)
T d1t46a_          84 GNHMNIVNLLG-ACT---IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMA  159 (311)
T ss_dssp             CCCTTBCCEEE-EEC---SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEE-EEE---ECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             69998878998-983---19978999973799879999985356654444453322233458899999999999999999


Q ss_pred             HHCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf             51014704225687604532488534530776679999963112222234446889999730333321011234434568
Q 002736           97 AAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTA  176 (886)
Q Consensus        97 ~lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (886)
                      |||++||+||||||+||+++..+.+|++|||.++........                                      
T Consensus       160 ~LH~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~--------------------------------------  201 (311)
T d1t46a_         160 FLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY--------------------------------------  201 (311)
T ss_dssp             HHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTS--------------------------------------
T ss_pred             HHHHCCEEECCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCC--------------------------------------
T ss_conf             887579266624102100002575210234010233678861--------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             88853556334467766763211257554444444443000002378988503320246620035132799988646510
Q 002736          177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIY  256 (886)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIw  256 (886)
                                                                        ...+...||+.|+|||++.+..++.++|||
T Consensus       202 --------------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DIw  231 (311)
T d1t46a_         202 --------------------------------------------------VVKGNARLPVKWMAPESIFNCVYTFESDVW  231 (311)
T ss_dssp             --------------------------------------------------EECSSSEECGGGCCHHHHHHCCCCHHHHHH
T ss_pred             --------------------------------------------------EEEEECCCCHHHCCHHHHCCCCCCCCCCCC
T ss_conf             --------------------------------------------------586201359687677886179999740010


Q ss_pred             HHHHHHHHHHC---CCCCC-CHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             18899999732---89999-4346776753037899022215903599999715999999989888861
Q 002736          257 RLGVLLFELFC---PFSTG-EEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       257 SlGvil~ell~---pf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ||||++|||++   |++.. .........+.....+..+...++.+.+|+.+||.+||.+|||+.++++
T Consensus       232 S~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         232 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             HHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             258999999858998877899899999998668988985436599999999975779657929999999

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-34  Score=227.87  Aligned_cols=272  Identities=15%  Similarity=0.218  Sum_probs=211.5

Q ss_pred             EEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEE
Q ss_conf             48899205733589998899999689998999968991999975864475665333348723789801699807999869
Q 002736          554 RVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQI  633 (886)
Q Consensus       554 ~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l  633 (886)
                      +..+.|     .+|.++|++++|+|    |+||+.||.|++|+..+.            ...|...|.++.+.+  +..+
T Consensus         4 ~~i~~l-----~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------------~~~h~~~V~~~~~~~--~~~~   60 (287)
T d1pgua2           4 EVLKTI-----SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------------HQDHSNLIVSLDNSK--AQEY   60 (287)
T ss_dssp             EEEEEE-----CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------------ECCCCSCEEEEECCS--TTCC
T ss_pred             CEEEEE-----CCCCCCEEEEEECC----EEEEECCCEEEEEECCCC------------CCCCCCCEEEEEECC--CCEE
T ss_conf             034999-----88798649999895----789848991999989998------------888778789999659--9728


Q ss_pred             EEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEE
Q ss_conf             99628991999987886278881235874999998139999899981899499994750344420473034453279869
Q 002736          634 ASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVC  713 (886)
Q Consensus       634 ~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~  713 (886)
                      ++++.|+++++|++...+       ....+.++.+.+ ++..++++ .++.+.+|+...       +..+..+.....+.
T Consensus        61 ~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~  124 (287)
T d1pgua2          61 SSISWDDTLKVNGITKHE-------FGSQPKVASANN-DGFTAVLT-NDDDLLILQSFT-------GDIIKSVRLNSPGS  124 (287)
T ss_dssp             EEEETTTEEEETTEEEEE-------CSSCEEEEEECS-SSEEEEEE-TTSEEEEEETTT-------CCEEEEEECSSCEE
T ss_pred             EEEEECCCCCCCCCCCCC-------CCCCEEEEEECC-CCCEEEEE-ECCCCEEEECCC-------EEEEEECCCCCEEE
T ss_conf             988610122211111111-------122101466416-78569996-033210000110-------03543101222035


Q ss_pred             EEEEECCCCCEEEEEECCC-EEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf             9998189996899993899-099996589983469991279986799964-99989999789949999479997665698
Q 002736          714 CVQFPLDSGRSLAFGSADH-RIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDT  791 (886)
Q Consensus       714 ~i~~sp~~~~~l~~gs~dg-~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  791 (886)
                      +  ++++ +..+++++.++ .+++|++...+........|...+.+++|+ ++.+|++|+.||.|++||+.....     
T Consensus       125 ~--~~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-----  196 (287)
T d1pgua2         125 A--VSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----  196 (287)
T ss_dssp             E--EEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred             E--EECC-CCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCC-----
T ss_conf             6--5214-7511100022100021000122100012102478536999516765211011111100000023321-----


Q ss_pred             CCEEEECCCCCEEEEEEECC----------CCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             81386067885349999139----------99999984999299971399986101035799999988556679959999
Q 002736          792 PLHSFTGHTNVKNFVGLSVW----------DGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSV  861 (886)
Q Consensus       792 ~~~~~~~h~~~v~~v~~sp~----------~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v  861 (886)
                      ....+.+|...|++++|+|.          +.++++|+.|+.|++|++..+.....            ...+|...|+++
T Consensus       197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~------------~~~~h~~~V~~v  264 (287)
T d1pgua2         197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK------------ALNAHKDGVNNL  264 (287)
T ss_dssp             EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE------------ETTSSTTCEEEE
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEE------------EECCCCCCEEEE
T ss_conf             10001111111100000136541001267887027664999599988899975899------------927878985899


Q ss_pred             EECCCCCCEEEEEECCCCEEEEEEC
Q ss_conf             9906999599998479979999709
Q 002736          862 CWRGQSSNTLVAANSSGNIKILEMV  886 (886)
Q Consensus       862 ~~~~~~~~~lvs~~~dg~I~iw~l~  886 (886)
                      +|++++  .|++++.||.|++|++|
T Consensus       265 ~~~~~~--~l~s~g~D~~v~iW~i~  287 (287)
T d1pgua2         265 LWETPS--TLVSSGADACIKRWNVV  287 (287)
T ss_dssp             EEEETT--EEEEEETTSCEEEEEEC
T ss_pred             EECCCC--EEEEEECCCEEEEEEEC
T ss_conf             998999--89999799929999979

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=254.11  Aligned_cols=212  Identities=19%  Similarity=0.213  Sum_probs=156.4

Q ss_pred             CCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             2222357344204654-56789977633443358962999851-785234450499998686899999999999999510
Q 002736           22 ELRKHSDGVELTHGDH-LRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAH   99 (886)
Q Consensus        22 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH   99 (886)
                      .+.+|..  .+.+.+| ++++.+++ ++.   ....++++||| .|++|.+++... +.+++..+..+++||+.||.|+|
T Consensus        74 ~~~~E~~--il~~l~h~pnIv~~~~-~~~---~~~~~~~v~e~~~~~~L~~~i~~~-~~~~e~~~~~~~~Qi~~al~~lH  146 (322)
T d1vzoa_          74 HTRTERQ--VLEHIRQSPFLVTLHY-AFQ---TETKLHLILDYINGGELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLH  146 (322)
T ss_dssp             GCCCHHH--HHHHHHTCTTBCCEEE-EEE---ETTEEEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHCCCCCEEEEEEE-EEC---CCCCEEEEEECCCCCHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999--9986467983999620-002---487300123123411799998730-45437888888999999998851


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             14704225687604532488534530776679999963112222234446889999730333321011234434568888
Q 002736          100 SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTN  179 (886)
Q Consensus       100 s~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (886)
                      ++||+||||||+|||++.++.+|++|||+++.+......                                         
T Consensus       147 ~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~-----------------------------------------  185 (322)
T d1vzoa_         147 KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE-----------------------------------------  185 (322)
T ss_dssp             HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGG-----------------------------------------
T ss_pred             CCCEEECCCCCCCEEECCCCCEEEEECCCHHHHCCCCCC-----------------------------------------
T ss_conf             499896547732012469998887413202220344443-----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCC--CCCCCCCCH
Q ss_conf             535563344677667632112575544444444430000023789885033202466200351327999--886465101
Q 002736          180 DLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAP--VSCASDIYR  257 (886)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~--~t~~sDIwS  257 (886)
                                                                      ......|++.|+|||++.+..  ++.++||||
T Consensus       186 ------------------------------------------------~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWS  217 (322)
T d1vzoa_         186 ------------------------------------------------RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWS  217 (322)
T ss_dssp             ------------------------------------------------GGCGGGSCCTTCCHHHHTTCC---CTHHHHHH
T ss_pred             ------------------------------------------------CCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHH
T ss_conf             ------------------------------------------------22122233333106876057768871325177


Q ss_pred             HHHHHHHHHC---CCCCCCHHHHHHH--HHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCC-----CHHHHHCCCCCCC
Q ss_conf             8899999732---8999943467767--5303789902221590359999971599999998-----9888861988779
Q 002736          258 LGVLLFELFC---PFSTGEEKTRTMS--SLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRP-----KMGELLQSEFLNE  327 (886)
Q Consensus       258 lGvil~ell~---pf~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t~~eil~h~~~~~  327 (886)
                      |||+||||++   ||...........  .......++.+...++.+.+|+.+||.+||.+||     |++|+++||||..
T Consensus       218 lG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~  297 (322)
T d1vzoa_         218 LGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQK  297 (322)
T ss_dssp             HHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTT
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCHHHCC
T ss_conf             77999999768999888877779999998335689988654799999999997445898819997450999974972348


Q ss_pred             CC
Q ss_conf             86
Q 002736          328 PR  329 (886)
Q Consensus       328 ~~  329 (886)
                      ..
T Consensus       298 i~  299 (322)
T d1vzoa_         298 IN  299 (322)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             99

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=223.69  Aligned_cols=314  Identities=13%  Similarity=0.189  Sum_probs=217.6

Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEE------EECCCCCEEEEECC
Q ss_conf             589998899999689998999968991999975864475665333348723789801699------80799986999628
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSIC------WNSYIKSQIASSNF  638 (886)
Q Consensus       565 ~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~------~~~~~~~~l~s~s~  638 (886)
                      .+|.+.|.++++++  ++++||+.|+.|+||+........ ..........+...+..+.      ++.....++++++.
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCC-CCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEC
T ss_conf             76367127999969--999999799969987898788776-540467654204771676667500157998768999948


Q ss_pred             CCCEEEEECCCCEEE-----EEE-----CCCCCCEEEEEECCCC----CCEEEEEECCCCEEEEECCHHHHH-----HCC
Q ss_conf             991999987886278-----881-----2358749999981399----998999818994999947503444-----204
Q 002736          639 EGVVQVWDVSRSQVL-----TEM-----REHERRVWSIDFSSAD----PTLLASGSDDGSVKLWSINQAILL-----LHL  699 (886)
Q Consensus       639 Dg~V~iWd~~~~~~~-----~~~-----~~h~~~V~~i~~sp~~----~~~l~sgs~Dg~v~iwdl~~~~~~-----~~~  699 (886)
                      ||.|++|++......     ...     ..+...++.+.|.+..    +.++++++.||++++|++......     ...
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf             99199998228982056512456324311578966899984478865421799983898199987404775341023310


Q ss_pred             CCE---EEEE----ECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEE------EEECCCCCEEEEEEC-CCC
Q ss_conf             730---3445----32798699998189996899993899099996589983469------991279986799964-999
Q 002736          700 GVS---IGTI----KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC------TLIGHNKTVSYVKFV-DAT  765 (886)
Q Consensus       700 ~~~---~~~~----~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~------~~~~h~~~V~~i~f~-~~~  765 (886)
                      ...   ....    .....+.+++|+|+ + +|++|+.|++|++||+.+.+. +.      .+.+|..+|.+++|+ ++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             CCCEECCCCEECCCCCCCCEEEEEECCC-C-EEEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             3200014510002578986789997899-9-899993898299986023321-100001111124256387700466532


Q ss_pred             EEEEEECCCC---EEEEECCCCCCCC-------CCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCC
Q ss_conf             8999978994---9999479997665-------69881386067885349999139999999849992999713999861
Q 002736          766 TLVSASTDNT---LKLWDLSMCTSRV-------IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA  835 (886)
Q Consensus       766 ~l~sgs~Dg~---I~iwd~~~~~~~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~  835 (886)
                      +|++|+.|++   |++||+..+....       .......+.||.+.|++++|+|++++|++||.|+.|++||+.+++.+
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEE
T ss_conf             01124289884210010353213444311566664310232023586660013898880698779998999999999799


Q ss_pred             EEECCCCCCCCCC----CCC-----CCCCCCEEEEEECCCCC---------CEEEEEECCCCEEEEEE
Q ss_conf             0103579999998----855-----66799599999906999---------59999847997999970
Q 002736          836 LSFNFNHADPLSG----PET-----DDAAQFISSVCWRGQSS---------NTLVAANSSGNIKILEM  885 (886)
Q Consensus       836 ~~~~~~~~~~~~~----~~~-----~~~~~~V~~v~~~~~~~---------~~lvs~~~dg~I~iw~l  885 (886)
                      ..++. |.+++..    ...     ......+.++.|.+.+.         ..|++++.|+.|++|.-
T Consensus       325 ~~l~g-H~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         325 TTLNM-HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             EEEEC-CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             EEECC-CCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEEC
T ss_conf             99988-68761377348999999999998312469988667663123688997999991990899908

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-33  Score=220.38  Aligned_cols=282  Identities=17%  Similarity=0.295  Sum_probs=216.8

Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf             58999889999968999899996899199997586447566533334872378980169980799986999628991999
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQV  644 (886)
Q Consensus       565 ~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~i  644 (886)
                      .+|...|+|++|  |+++||||+.||.|+|||+.+..       .......|...|.+++|+   +++|++|+.||.|++
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~   79 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRV   79 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEECC---SSEEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCC-------EEEEEECCCCCEEEEECC---CCEEECCCCCCCCCC
T ss_conf             899998899987--69999999289939999999991-------999992677877634236---300210011101100


Q ss_pred             EECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCE
Q ss_conf             98788627888123587499999813999989998189949999475034442047303445327986999981899968
Q 002736          645 WDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS  724 (886)
Q Consensus       645 Wd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  724 (886)
                      |++..+........+.......  .+ ....++++..++.+.+|+.......   ........+...+.++.+.+.   .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~---~  150 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEAVLHL--RF-NNGMMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFDDK---Y  150 (293)
T ss_dssp             EESSSCCEEEEECCCCSCEEEE--EC-CTTEEEEEETTSCEEEEECSSSSCC---EEEEEECCCSSCEEEEEEETT---E
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC--CC-CCCCEEECCCCCCEEEEECCCCCCC---CCCCCCCCCCCCCCCCEECCC---C
T ss_conf             0002464100111111000011--11-1100000135663068613445444---212100011354311000002---2


Q ss_pred             EEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf             99993899099996589983469991279986799964999899997899499994799976656988138606788534
Q 002736          725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN  804 (886)
Q Consensus       725 l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~  804 (886)
                      +++++.|+.|++||+++.+ ++..+.++...+..+.+. +..+++++.|++|++||+++.      ..+..+.+|...+.
T Consensus       151 ~~~~s~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~  222 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVR  222 (293)
T ss_dssp             EEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEE
T ss_pred             CCCCCCCCCEEEECCCCCC-EEEEECCCCCCCCCCCCC-CCEEEEECCCCEEEEEECCCC------EEEEEECCCCEEEE
T ss_conf             0110699860410078883-889971554453221689-875887658998999866556------14665214310000


Q ss_pred             EEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf             99991399999998499929997139998610103579999998855667995999999069995999984799799997
Q 002736          805 FVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       805 ~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~iw~  884 (886)
                      .  +++++.+|++|+.||.|++|++...........    ........+|...|++++|+  +. .|++++.||+|++|+
T Consensus       223 ~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~H~~~V~~v~~d--~~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         223 C--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG----TLCLRTLVEHSGRVFRLQFD--EF-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             E--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT----TTEEEEECCCSSCCCCEEEC--SS-CEEECCSSSEEEEEC
T ss_pred             E--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCC----CEEEEEECCCCCCEEEEEEC--CC-EEEEEECCCEEEEEC
T ss_conf             0--145410799986799799998888864445677----54557845889988999971--99-999992299899959

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-32  Score=217.86  Aligned_cols=268  Identities=14%  Similarity=0.178  Sum_probs=206.1

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEC
Q ss_conf             00453346247864137448899205733589998899999689998999968991999975864475665333348723
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .+++..||.+++|+..+.+....+.    .+|...|++++|+|++.+ ++++.|+.+++|+.......    ........
T Consensus        27 l~s~s~Dg~v~vWd~~~~~~~~~~~----~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~----~~~~~~~~   97 (299)
T d1nr0a2          27 LFSADAEGHINSWDISTGISNRVFP----DVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVD----SSKAVANK   97 (299)
T ss_dssp             EEEEETTSCEEEEETTTCCEEECSS----CSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSC----TTSCCEEE
T ss_pred             EEEECCCCEEEEEECCCCCEEEEEC----CCCCCCEEEEEEECCCEE-ECCCCEEEEEEECCCCCCCC----CCCCCCCC
T ss_conf             9999089929999999996889983----788774899884033112-10231026887316776201----11000111


Q ss_pred             CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHH
Q ss_conf             78980169980799986999628991999987886278881235874999998139999899981899499994750344
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL  695 (886)
Q Consensus       616 ~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~  695 (886)
                      +...+.+++|++ ++..+++++ ++.+.+|+...  .....  ....+.+++|+| ++.++++|+.|+.|.+||+++.. 
T Consensus        98 ~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~-  169 (299)
T d1nr0a2          98 LSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGAS-  169 (299)
T ss_dssp             CSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTE-
T ss_pred             CCCCCCCCCCCC-CCCCCCCCC-CCCCCCCCCCC--CCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             134432100112-211111222-22221111111--11101--111233221111-11111111111111111111111-


Q ss_pred             HHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC--CEEEEECCCCCEEEEEEC-CCCEEEEEEC
Q ss_conf             4204730344532798699998189996899993899099996589983--469991279986799964-9998999978
Q 002736          696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI--PLCTLIGHNKTVSYVKFV-DATTLVSAST  772 (886)
Q Consensus       696 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~--~~~~~~~h~~~V~~i~f~-~~~~l~sgs~  772 (886)
                          ........+...|.+++|+|+ +.++++++.|+.|++||+.+...  ....+.+|...|.+++|+ ++.+|++|+.
T Consensus       170 ----~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         170 ----VSEVKTIVHPAEITSVAFSNN-GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             ----EEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ----CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             ----111111111111111111111-111111111111111111111111111111111111111124666451388828


Q ss_pred             CCCEEEEECCCCCCCCCCCCCEEEECCC-CCEEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             9949999479997665698813860678-853499991399999998499929997139
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSFTGHT-NVKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       773 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~lasgs~dg~i~iwd~~  830 (886)
                      ||.|++||+++...    .++.....|. ..++++.+ +++.+|++|+.|+.|++||+.
T Consensus       245 dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         245 DNSVIVWNMNKPSD----HPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEETTCTTS----CCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCCCC----CEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEECC
T ss_conf             99799998999973----1489834898896899997-798999999289979999444

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.8e-37  Score=247.12  Aligned_cols=226  Identities=18%  Similarity=0.118  Sum_probs=155.9

Q ss_pred             CCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             542310258--999832222357344204654567899776334433589629998517852344504999986868999
Q 002736            8 GERFGVRGD--DSNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYECL   85 (886)
Q Consensus         8 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~~   85 (886)
                      |+.++++-.  ......++.|...+  ....|++++..+. .|.  ...+.++++|||.+++|.+.+....+.+++.++.
T Consensus        32 ~~~vAvK~~~~~~~~~~~~~E~~i~--~~l~~~~~i~~~~-~~~--~~~~~~~ivme~~~~~l~~~~~~~~~~~~~~~~~  106 (299)
T d1ckia_          32 GEEVAIKLECVKTKHPQLHIESKIY--KMMQGGVGIPTIR-WCG--AEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVL  106 (299)
T ss_dssp             TEEEEEEEEESCTTSCCHHHHHHHH--HHSTTSTTCCCEE-EEE--EETTEEEEEEECCCCBHHHHHHHTTTCCCHHHHH
T ss_pred             CCEEEEEEECHHCCCHHHHHHHHHH--HHCCCCCCCCEEE-EEE--ECCCEEEEEEEECCCCHHHHHHHCCCCCCHHHHH
T ss_conf             9899999972100588899999999--9703899601799-999--5198778999873871333244306887689999


Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCEEECC---CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99999999999510147042256876045324---885345307766799999631122222344468899997303333
Q 002736           86 HIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS---FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQR  162 (886)
Q Consensus        86 ~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~---~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (886)
                      .++.||+.||.|||++||+||||||+|||+..   ...+|++|||+++.+........                      
T Consensus       107 ~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~----------------------  164 (299)
T d1ckia_         107 LLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH----------------------  164 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCB----------------------
T ss_pred             HHHHHHHHHHHHHHHCCEEECCCCHHHCCCCCCCCCCEEEEECCCCCEECCCCCCCCC----------------------
T ss_conf             9999999999999979944266787660643357776156504675134255445541----------------------


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCC
Q ss_conf             21011234434568888535563344677667632112575544444444430000023789885033202466200351
Q 002736          163 RTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE  242 (886)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE  242 (886)
                                                                                   ..........||+.|+|||
T Consensus       165 -------------------------------------------------------------~~~~~~~~~~gt~~y~aPE  183 (299)
T d1ckia_         165 -------------------------------------------------------------IPYRENKNLTGTARYASIN  183 (299)
T ss_dssp             -------------------------------------------------------------CCCCBCCSCCCCSSSCCHH
T ss_pred             -------------------------------------------------------------EECCCCCCCCCCCCCCCHH
T ss_conf             -------------------------------------------------------------0001357767873532999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCHHHHHHHH--HC---CCCCCH-HHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             3279998864651018899999732---89999434677675--30---378990-222159035999997159999999
Q 002736          243 ELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSS--LR---HRVLPP-QLLLKFPKEASFCLWLLHPEPSGR  313 (886)
Q Consensus       243 ~~~~~~~t~~sDIwSlGvil~ell~---pf~~~~~~~~~~~~--~~---~~~~~~-~~~~~~~~~~~li~~~L~~dP~~R  313 (886)
                      ++.+.+++.++|||||||++|||++   ||............  ..   .....+ .....++++.+++..||..+|.+|
T Consensus       184 ~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~R  263 (299)
T d1ckia_         184 THLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDK  263 (299)
T ss_dssp             HHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCC
T ss_pred             HHHCCCCCCHHHEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHC
T ss_conf             99189989832188617789999849876655305779999998523567898357534788999999999843995579


Q ss_pred             CCHHHHHC
Q ss_conf             89888861
Q 002736          314 PKMGELLQ  321 (886)
Q Consensus       314 pt~~eil~  321 (886)
                      |++.++.+
T Consensus       264 P~~~~i~~  271 (299)
T d1ckia_         264 PDYSYLRQ  271 (299)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
T ss_conf             19999999

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-37  Score=246.10  Aligned_cols=205  Identities=13%  Similarity=0.071  Sum_probs=160.8

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-CCCCHHHHHCCC---------CCCCCHHHHHHHHHHHH
Q ss_conf             22235734420465456789977633443358962999851-785234450499---------99868689999999999
Q 002736           23 LRKHSDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEW-GDVSLRQWLDKP---------KRSVDVYECLHIFRQIV   92 (886)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~g~sL~~~l~~~---------~~~~~~~~~~~i~~qi~   92 (886)
                      |.+|.  ..+.+.+|+|++.+++ +|.   ..+.++++||| .+|+|.+++...         ...+++..+..|+.||+
T Consensus        70 ~~~E~--~il~~l~h~nIv~~~~-~~~---~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia  143 (308)
T d1p4oa_          70 FLNEA--SVMKEFNCHHVVRLLG-VVS---QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIA  143 (308)
T ss_dssp             HHHHH--HHGGGCCCTTBCCEEE-EEC---SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHCCCCCEEEEEE-EEE---CCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999--9999769998841254-784---28810677760489988999875033211344468879999999999999


Q ss_pred             HHHHHHCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf             99995101470422568760453248853453077667999996311222223444688999973033332101123443
Q 002736           93 EIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQ  172 (886)
Q Consensus        93 ~~l~~lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (886)
                      .||.|||+++|+||||||+|||++.++++|++|||+++........                                  
T Consensus       144 ~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~----------------------------------  189 (308)
T d1p4oa_         144 DGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYY----------------------------------  189 (308)
T ss_dssp             HHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCE----------------------------------
T ss_pred             HHHHHHHHCCEEECEECCCCEEECCCCEEEEEECCCCEECCCCCCE----------------------------------
T ss_conf             9999876479654328677540359964999424542023577630----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCC
Q ss_conf             45688885355633446776676321125755444444444300000237898850332024662003513279998864
Q 002736          173 LVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCA  252 (886)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~  252 (886)
                                                                            .......|++.|+|||.+.+..++.+
T Consensus       190 ------------------------------------------------------~~~~~~~~t~~y~aPe~l~~~~~~~~  215 (308)
T d1p4oa_         190 ------------------------------------------------------RKGGKGLLPVRWMSPESLKDGVFTTY  215 (308)
T ss_dssp             ------------------------------------------------------EGGGSSEECGGGCCHHHHHHCCCCHH
T ss_pred             ------------------------------------------------------EECCCEECCCCCCCHHHHCCCCCCCC
T ss_conf             ------------------------------------------------------31340231632378888736998833


Q ss_pred             CCCCHHHHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             651018899999732---899994346776753037899022215903599999715999999989888861
Q 002736          253 SDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       253 sDIwSlGvil~ell~---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      +|||||||++|||++   +++...........+.....++.+...++.+.+++.+||..+|.+|||+.++++
T Consensus       216 ~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~  287 (308)
T d1p4oa_         216 SDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIIS  287 (308)
T ss_dssp             HHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             344437899999996899999998999999999808888886335399999999975779658939999999

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=246.81  Aligned_cols=225  Identities=12%  Similarity=0.104  Sum_probs=155.5

Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHH
Q ss_conf             5423102589-99832222357344204654567899776334433-58962999851-785234450499998686899
Q 002736            8 GERFGVRGDD-SNDFELRKHSDGVELTHGDHLRNQGGLSGVCENEA-AIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYEC   84 (886)
Q Consensus         8 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~   84 (886)
                      |..++++--. .....+..|.+...+...+|+|++.+++ +|.++. ....++++||| .+++|.++|++.  .+++..+
T Consensus        26 g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~-~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~--~l~~~~~  102 (303)
T d1vjya_          26 GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIA-ADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGM  102 (303)
T ss_dssp             TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEE-EEEEECSSSEEEEEEEECCTTCBHHHHHHHC--CBCHHHH
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEE-EEEECCCCCEEEEEEEECCCCCCHHHHHHCC--CCCHHHH
T ss_conf             989999998720046799999999996279986832688-9983798604899999646698989998658--9998999


Q ss_pred             HHHHHHHHHHHHHHCC--------CCEEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999995101--------47042256876045324885345307766799999631122222344468899997
Q 002736           85 LHIFRQIVEIVYAAHS--------QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLP  156 (886)
Q Consensus        85 ~~i~~qi~~~l~~lHs--------~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (886)
                      +.++.|++.||.|+|+        +||+||||||+|||++.++.+|++|||+++........                  
T Consensus       103 ~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~------------------  164 (303)
T d1vjya_         103 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT------------------  164 (303)
T ss_dssp             HHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTE------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC------------------
T ss_conf             99999999999998876652046898661531731357868877688763866234677762------------------


Q ss_pred             CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             30333321011234434568888535563344677667632112575544444444430000023789885033202466
Q 002736          157 LDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETN  236 (886)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  236 (886)
                                                                                          ........+||+
T Consensus       165 --------------------------------------------------------------------~~~~~~~~~gt~  176 (303)
T d1vjya_         165 --------------------------------------------------------------------IDIAPNHRVGTK  176 (303)
T ss_dssp             --------------------------------------------------------------------ECC----CCSCG
T ss_pred             --------------------------------------------------------------------EECCCCCEECCC
T ss_conf             --------------------------------------------------------------------001355250354


Q ss_pred             CEECCCCCCCCC------CCCCCCCCHHHHHHHHHHC---CCCCCCHH--------------HHHHHHHCC-CCCCH---
Q ss_conf             200351327999------8864651018899999732---89999434--------------677675303-78990---
Q 002736          237 WYASPEELAGAP------VSCASDIYRLGVLLFELFC---PFSTGEEK--------------TRTMSSLRH-RVLPP---  289 (886)
Q Consensus       237 ~Y~aPE~~~~~~------~t~~sDIwSlGvil~ell~---pf~~~~~~--------------~~~~~~~~~-~~~~~---  289 (886)
                      .|+|||++.+..      ++.++|||||||+||||+|   ||......              ......... ...|+   
T Consensus       177 ~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  256 (303)
T d1vjya_         177 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPN  256 (303)
T ss_dssp             GGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCG
T ss_pred             CCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             76782210565454677767501220159999999628998876631124101225564309999998750246888776


Q ss_pred             HHHC--CCHHHHHHHHHCCCCCCCCCCCHHHHHC
Q ss_conf             2221--5903599999715999999989888861
Q 002736          290 QLLL--KFPKEASFCLWLLHPEPSGRPKMGELLQ  321 (886)
Q Consensus       290 ~~~~--~~~~~~~li~~~L~~dP~~Rpt~~eil~  321 (886)
                      ....  ....+.+++.+||..||.+|||+.|+++
T Consensus       257 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~  290 (303)
T d1vjya_         257 RWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             GGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHH
T ss_conf             5577689999999999976069858959999999

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=5.8e-36  Score=239.64  Aligned_cols=225  Identities=14%  Similarity=0.093  Sum_probs=156.0

Q ss_pred             CCCCCCCCC--CCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCHHHH
Q ss_conf             542310258--9998322223-5734420465456789977633443358962999851785234450499998686899
Q 002736            8 GERFGVRGD--DSNDFELRKH-SDGVELTHGDHLRNQGGLSGVCENEAAIDPFVHAIEWGDVSLRQWLDKPKRSVDVYEC   84 (886)
Q Consensus         8 ~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~sL~~~l~~~~~~~~~~~~   84 (886)
                      |+.++++--  ......++.| ..+..+.+++|.+.+..++      .....++++||+.|++|.+++......+++.++
T Consensus        30 ~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~------~~~~~~~~vme~~~~~l~~~~~~~~~~~~~~~~  103 (293)
T d1csna_          30 NQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFG------QEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTV  103 (293)
T ss_dssp             TEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEE------EETTEEEEEEECCCCBHHHHHHHTTTCCCHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE------ECCCCCEEEEEECCCCHHHHHHHHCCCHHHHHH
T ss_conf             97999999750258299999999999964899987799996------018811799996488879999752031106899


Q ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCCCCEEECC-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             999999999999510147042256876045324-----885345307766799999631122222344468899997303
Q 002736           85 LHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS-----FNHVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDM  159 (886)
Q Consensus        85 ~~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~-----~~~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (886)
                      ..++.|++.||.|+|++||+||||||+|||++.     .+.+|++|||+++...........                  
T Consensus       104 ~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~------------------  165 (293)
T d1csna_         104 AMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHI------------------  165 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBC------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCCCCCCEEECCCCEEEECCCCCCCCCE------------------
T ss_conf             99999999999999977966266771315234754344795687236605771467665411------------------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf             33321011234434568888535563344677667632112575544444444430000023789885033202466200
Q 002736          160 LQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYA  239 (886)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  239 (886)
                                                                                       .........||+.||
T Consensus       166 -----------------------------------------------------------------~~~~~~~~~GT~~y~  180 (293)
T d1csna_         166 -----------------------------------------------------------------PYREKKNLSGTARYM  180 (293)
T ss_dssp             -----------------------------------------------------------------CCCCCCCCCSCTTTC
T ss_pred             -----------------------------------------------------------------EECCCCCEEECHHHC
T ss_conf             -----------------------------------------------------------------102467627751026


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCCCCHH--HHHHHH---HCCCCCCH-HHHCCCHHHHHHHHHCCCCCC
Q ss_conf             3513279998864651018899999732---89999434--677675---30378990-222159035999997159999
Q 002736          240 SPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEK--TRTMSS---LRHRVLPP-QLLLKFPKEASFCLWLLHPEP  310 (886)
Q Consensus       240 aPE~~~~~~~t~~sDIwSlGvil~ell~---pf~~~~~~--~~~~~~---~~~~~~~~-~~~~~~~~~~~li~~~L~~dP  310 (886)
                      |||++.+.+++.++|||||||++|||++   ||......  ......   ......++ .....++++.+++..|+..+|
T Consensus       181 aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~  260 (293)
T d1csna_         181 SINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAF  260 (293)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCT
T ss_pred             CHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             79896488888699989831999999869876788530219999999970567999589657998999999999843993


Q ss_pred             CCCCCHHHHHC
Q ss_conf             99989888861
Q 002736          311 SGRPKMGELLQ  321 (886)
Q Consensus       311 ~~Rpt~~eil~  321 (886)
                      .+||+++.+.+
T Consensus       261 ~~rP~y~~l~~  271 (293)
T d1csna_         261 DATPDYDYLQG  271 (293)
T ss_dssp             TCCCCHHHHHH
T ss_pred             CCCCCHHHHHH
T ss_conf             00859999999

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-32  Score=214.85  Aligned_cols=275  Identities=15%  Similarity=0.209  Sum_probs=189.6

Q ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECC-CCCCCCCCCEEE------EEECC-CCCEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf             100453346247864137448899205-733589998899------99968-9998999968991999975864475665
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQ-GDLLNSSNLVCS------LSFDR-DGELFAAAGVNKKIKVFECDAIINENRD  606 (886)
Q Consensus       535 ~~~~~~~dg~~~~~~~~~~~~~~~l~~-~~l~~h~~~V~s------i~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~  606 (886)
                      ..+++..|+.+++|+..+.+....... .....|...+..      +..+. ++.++++++.||.|++|++.........
T Consensus        26 ~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~  105 (393)
T d1sq9a_          26 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV  105 (393)
T ss_dssp             EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCE
T ss_pred             EEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCEEEE
T ss_conf             99999799969987898788776540467654204771676667500157998768999948991999982289820565


Q ss_pred             CCCC---EEEECCCCCEEEEEEECCC----CCEEEEECCCCCEEEEECCCCE------------------EEEEECCCCC
Q ss_conf             3333---4872378980169980799----9869996289919999878862------------------7888123587
Q 002736          607 IHYP---VVEMASRSKLSSICWNSYI----KSQIASSNFEGVVQVWDVSRSQ------------------VLTEMREHER  661 (886)
Q Consensus       607 ~~~~---~~~~~~~~~I~~i~~~~~~----~~~l~s~s~Dg~V~iWd~~~~~------------------~~~~~~~h~~  661 (886)
                      ....   .....+...+..++|.+..    ..++++++.||++++|++....                  .......+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (393)
T d1sq9a_         106 IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ  185 (393)
T ss_dssp             EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC
T ss_pred             ECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEECCCCEECCCCCCC
T ss_conf             12456324311578966899984478865421799983898199987404775341023310320001451000257898


Q ss_pred             CEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC---EEEEEE
Q ss_conf             49999981399998999818994999947503444204730344532798699998189996899993899---099996
Q 002736          662 RVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADH---RIYYYD  738 (886)
Q Consensus       662 ~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg---~I~iwD  738 (886)
                      .+++++|+| ++ +|++|+.|++|++||+.+......+........|...|.+++|+|+ +++|++|+.|+   .|++||
T Consensus       186 ~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~l~sgs~D~t~~~i~lwd  262 (393)
T d1sq9a_         186 FATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYE  262 (393)
T ss_dssp             CCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEECC-CC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCEEEEECCCCCCCEEEECC
T ss_conf             678999789-99-8999938982999860233211000011111242563877004665-32011242898842100103


Q ss_pred             CCCCCCCEEEE-------------ECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf             58998346999-------------1279986799964-999899997899499994799976656988138606788534
Q 002736          739 LRNSKIPLCTL-------------IGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN  804 (886)
Q Consensus       739 l~~~~~~~~~~-------------~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~  804 (886)
                      +.+++. +..+             .+|...|++++|+ ++++|+||+.|++|++||+.++      +++.++.+|...|.
T Consensus       263 ~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g------~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         263 TEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK------ERITTLNMHCDDIE  335 (393)
T ss_dssp             TTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT------EEEEEEECCGGGCS
T ss_pred             CCCCEE-EEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCC------CEEEEECCCCCCCC
T ss_conf             532134-44311566664310232023586660013898880698779998999999999------79999988687613


Q ss_pred             ----EEEEECCCCEEEEEC
Q ss_conf             ----999913999999984
Q 002736          805 ----FVGLSVWDGYVATGS  819 (886)
Q Consensus       805 ----~v~~sp~~~~lasgs  819 (886)
                          .++|++++..+++++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         336 IEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             SGGGCCCBCTTSCBCSSCC
T ss_pred             CCCCEEEECCCCCEEEECC
T ss_conf             7734899999999999831

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-29  Score=194.85  Aligned_cols=260  Identities=18%  Similarity=0.335  Sum_probs=204.3

Q ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             10045334624786413744889920573358999889999968999899996899199997586447566533334872
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       535 ~~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  614 (886)
                      ..++|..||.+++|+..+.++...+     .+|.+.|++++|  ++++|++|+.|+.|++|++.....        ....
T Consensus        27 ~l~sgs~Dg~i~vWd~~~~~~~~~l-----~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~--------~~~~   91 (293)
T d1p22a2          27 KIVSGLRDNTIKIWDKNTLECKRIL-----TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--------LNTL   91 (293)
T ss_dssp             EEEEEESSSCEEEEESSSCCEEEEE-----CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE--------EEEE
T ss_pred             EEEEEECCCEEEEEECCCCCEEEEE-----ECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCC--------CCCC
T ss_conf             9999928993999999999199999-----267787763423--630021001110110000024641--------0011


Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCE---EEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf             3789801699807999869996289919999878862---7888123587499999813999989998189949999475
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ---VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN  691 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~---~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~  691 (886)
                      .. .......+.+ ....++++..++.+.+|+.....   ....+..|...+..+.+.+   ..+++++.|+.+++||++
T Consensus        92 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~  166 (293)
T d1p22a2          92 IH-HCEAVLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTS  166 (293)
T ss_dssp             CC-CCSCEEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred             CC-CCCCCCCCCC-CCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC---CCCCCCCCCCCEEEECCC
T ss_conf             11-1100001111-110000013566306861344544421210001135431100000---220110699860410078


Q ss_pred             HHHHHHCCCCEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             03444204730344532-79869999818999689999389909999658998346999127998679996499989999
Q 002736          692 QAILLLHLGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSA  770 (886)
Q Consensus       692 ~~~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~l~sg  770 (886)
                      +       ...+..+.. ...+..+.++   +..+++++.|+.|++||+++.. ++....+|...+..+.+ ++..|+++
T Consensus       167 ~-------~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~-~~~~l~sg  234 (293)
T d1p22a2         167 T-------CEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRF-DNKRIVSG  234 (293)
T ss_dssp             T-------CCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEC-CSSEEEEE
T ss_pred             C-------CCEEEEECCCCCCCCCCCCC---CCEEEEECCCCEEEEEECCCCE-EEEEECCCCEEEEECCC-CCEEEEEE
T ss_conf             8-------83889971554453221689---8758876589989998665561-46652143100000145-41079998


Q ss_pred             ECCCCEEEEECCCCCCC---CCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             78994999947999766---56988138606788534999913999999984999299971
Q 002736          771 STDNTLKLWDLSMCTSR---VIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       771 s~Dg~I~iwd~~~~~~~---~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd  828 (886)
                      +.||.|++||+......   ....++..+.+|...|++++|+  +.+|++||.|+.|++||
T Consensus       235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf             679979999888886444567754557845889988999971--99999992299899959

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-34  Score=225.79  Aligned_cols=199  Identities=19%  Similarity=0.251  Sum_probs=137.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEE--CCCCHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCC
Q ss_conf             5456789977633443358962999851--785234450-4999986868999999999999995101-47042256876
Q 002736           36 DHLRNQGGLSGVCENEAAIDPFVHAIEW--GDVSLRQWL-DKPKRSVDVYECLHIFRQIVEIVYAAHS-QGIVVHNVRPS  111 (886)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~g~sL~~~l-~~~~~~~~~~~~~~i~~qi~~~l~~lHs-~giiHrDlkP~  111 (886)
                      .|++++.++. ++..+.. ...+.++++  .++...... ......+++..+..+++||+.||.|||+ +||+||||||+
T Consensus        78 ~~~~iv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~  155 (362)
T d1q8ya_          78 GANHILKLLD-HFNHKGP-NGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPE  155 (362)
T ss_dssp             HHTTBCCCCE-EEEEEET-TEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGG
T ss_pred             CCCCEEEEEE-EEEECCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             7676478998-7631256-5202343200035420000012234678689999999999999888764058646567705


Q ss_pred             CEEECCCC------CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             04532488------534530776679999963112222234446889999730333321011234434568888535563
Q 002736          112 CFVMSSFN------HVSFIESASCSDSGSDSHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEAS  185 (886)
Q Consensus       112 Nill~~~~------~vk~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (886)
                      |||++..+      .++++|||.+......                                                  
T Consensus       156 NIll~~~~~~~~~~~~kl~dfg~s~~~~~~--------------------------------------------------  185 (362)
T d1q8ya_         156 NVLMEIVDSPENLIQIKIADLGNACWYDEH--------------------------------------------------  185 (362)
T ss_dssp             GEEEEEEETTTTEEEEEECCCTTCEETTBC--------------------------------------------------
T ss_pred             HEEEECCCCCCCCCEEEEEECCCCCCCCCC--------------------------------------------------
T ss_conf             705630576564430567531442123445--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             34467766763211257554444444443000002378988503320246620035132799988646510188999997
Q 002736          186 CMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFEL  265 (886)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~t~~sDIwSlGvil~el  265 (886)
                                                                 ....+||+.|+|||++.+..|+.++||||+||+++||
T Consensus       186 -------------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  222 (362)
T d1q8ya_         186 -------------------------------------------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFEL  222 (362)
T ss_dssp             -------------------------------------------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------CCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             -------------------------------------------4223665210571321466777643201237899999


Q ss_pred             HC---CCCCCCHHHH------H---HHHHCC----------------------CC-----C----------CHHHHCCCH
Q ss_conf             32---8999943467------7---675303----------------------78-----9----------902221590
Q 002736          266 FC---PFSTGEEKTR------T---MSSLRH----------------------RV-----L----------PPQLLLKFP  296 (886)
Q Consensus       266 l~---pf~~~~~~~~------~---~~~~~~----------------------~~-----~----------~~~~~~~~~  296 (886)
                      ++   ||........      .   +..+..                      ..     .          .......++
T Consensus       223 ~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (362)
T d1q8ya_         223 ITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAK  302 (362)
T ss_dssp             HHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHH
T ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCH
T ss_conf             87889989875543210268999999983799878862453220001320122024323577644421000156743589


Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf             359999971599999998988886198877986
Q 002736          297 KEASFCLWLLHPEPSGRPKMGELLQSEFLNEPR  329 (886)
Q Consensus       297 ~~~~li~~~L~~dP~~Rpt~~eil~h~~~~~~~  329 (886)
                      .+.+|+.+||..||.+|||+.|+|+||||....
T Consensus       303 ~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~  335 (362)
T d1q8ya_         303 EISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  335 (362)
T ss_dssp             HHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             HHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCC
T ss_conf             999999998779945790899996693407898

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.7e-29  Score=195.89  Aligned_cols=249  Identities=11%  Similarity=0.132  Sum_probs=195.3

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEC
Q ss_conf             00453346247864137448899205733589998899999689998999968991999975864475665333348723
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMA  615 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~  615 (886)
                      .+++..||.+++|+..+..          .+|.+.|.++.|++++ .+++++.|++|++|+....              .
T Consensus        24 l~sgs~Dg~v~~Wd~~~~~----------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~--------------~   78 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSMH----------QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH--------------E   78 (287)
T ss_dssp             TEEEETTSCEEETTTTEEE----------CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE--------------E
T ss_pred             EEEEECCCEEEEEECCCCC----------CCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCC--------------C
T ss_conf             7898489919999899988----------8877878999965997-2898861012221111111--------------1


Q ss_pred             CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECC-CCEEEEECCHHH
Q ss_conf             7898016998079998699962899199998788627888123587499999813999989998189-949999475034
Q 002736          616 SRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDD-GSVKLWSINQAI  694 (886)
Q Consensus       616 ~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~D-g~v~iwdl~~~~  694 (886)
                      ....+.++.+.+ ++..++++ .++.+.+|+..+++.+..+.. ...+.+  +++ ++..+++++.| +.+++|++... 
T Consensus        79 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~v~~~~~~~v~~~~~~~~-  151 (287)
T d1pgua2          79 FGSQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVRL-NSPGSA--VSL-SQNYVAVGLEEGNTIQVFKLSDL-  151 (287)
T ss_dssp             CSSCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEEC-SSCEEE--EEE-CSSEEEEEETTTSCEEEEETTEE-
T ss_pred             CCCCEEEEEECC-CCCEEEEE-ECCCCEEEECCCEEEEEECCC-CCEEEE--EEC-CCCCEEEECCCCCEEEEEECCCC-
T ss_conf             122101466416-78569996-033210000110035431012-220356--521-47511100022100021000122-


Q ss_pred             HHHCCCCEEEEE--ECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC----------
Q ss_conf             442047303445--32798699998189996899993899099996589983469991279986799964----------
Q 002736          695 LLLHLGVSIGTI--KTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV----------  762 (886)
Q Consensus       695 ~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~----------  762 (886)
                            ......  .+...+.+++|+|+ +.+|++|+.|+.|++||+.+.......+.+|...|.+++|+          
T Consensus       152 ------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  224 (287)
T d1pgua2         152 ------EVSFDLKTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE  224 (287)
T ss_dssp             ------EEEEECSSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred             ------CEEEEEEECCCCCEEEEEECCC-CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             ------1000121024785369995167-652110111111000000233211000111111110000013654100126


Q ss_pred             -CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf             -9998999978994999947999766569881386067885349999139999999849992999713
Q 002736          763 -DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK  829 (886)
Q Consensus       763 -~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~  829 (886)
                       ++.+++||+.|++|++||++...     ..+..+.+|...|++++|+|++ .++++|.|+.|++|++
T Consensus       225 ~~~~~l~sgs~D~~i~iw~~~~~~-----~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         225 IEEDLVATGSLDTNIFIYSVKRPM-----KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CSCCEEEEEETTSCEEEEESSCTT-----CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEECCCCEEEEEECCCCC-----EEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf             788702766499959998889997-----5899927878985899998999-8999979992999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.1e-29  Score=195.20  Aligned_cols=275  Identities=12%  Similarity=0.099  Sum_probs=193.8

Q ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf             100453346247864137448899205733589998899999689-9989999689919999758644756653333487
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRD-GELFAAAGVNKKIKVFECDAIINENRDIHYPVVE  613 (886)
Q Consensus       535 ~~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~d-g~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~  613 (886)
                      ..+++..||.+++|++.+......+..  ..+|.++|++++|+++ +.+|++|+.|+.|++|+........       ..
T Consensus        25 ~L~s~s~Dg~v~iwd~~~~~~~~~~~~--~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~-------~~   95 (342)
T d1yfqa_          25 LLLITSWDGSLTVYKFDIQAKNVDLLQ--SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-------AL   95 (342)
T ss_dssp             EEEEEETTSEEEEEEEETTTTEEEEEE--EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-------EC
T ss_pred             EEEEEECCCEEEEEECCCCCCCEEEEE--ECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCC-------CC
T ss_conf             999997999299997569986368988--558999889999958999789981265311454204432000-------00


Q ss_pred             ECCCC-CEEEEEEECCCCCEEEEECCCCCEEEEECCCCE----EEEEECCC--CCCEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf             23789-801699807999869996289919999878862----78881235--874999998139999899981899499
Q 002736          614 MASRS-KLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ----VLTEMREH--ERRVWSIDFSSADPTLLASGSDDGSVK  686 (886)
Q Consensus       614 ~~~~~-~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~----~~~~~~~h--~~~V~~i~~sp~~~~~l~sgs~Dg~v~  686 (886)
                      ..+.. ......+.+ +...+++++.|+.+++||+....    .......+  ........+.+ .+..+++++.|+.|+
T Consensus        96 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~  173 (342)
T d1yfqa_          96 TNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQ  173 (342)
T ss_dssp             BSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEE
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEEC-CCCCEEEECCCCCEE
T ss_conf             111111111111111-111111101222111020234443302300024300120000010001-687024651798478


Q ss_pred             EEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCC-----EEE---------EECC
Q ss_conf             99475034442047303445327986999981899968999938990999965899834-----699---------9127
Q 002736          687 LWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIP-----LCT---------LIGH  752 (886)
Q Consensus       687 iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~-----~~~---------~~~h  752 (886)
                      +|++......   ............+.+..+.+..+..+++++.|+.+.+|+.......     ...         ..+|
T Consensus       174 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
T d1yfqa_         174 WFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL  250 (342)
T ss_dssp             EEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred             EEECCCCCCC---CEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCC
T ss_conf             8760567634---1112102542210146763699987886548995999980598640111235125655531477762


Q ss_pred             CCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             9986799964-99989999789949999479997665698813860678853499991399999998499929997139
Q 002736          753 NKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA  830 (886)
Q Consensus       753 ~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~  830 (886)
                      ...|.+++|+ ++.+|+||+.||.|++||+.+.+      .+..+..+ .....++|+|+++++++++.|+.+++|...
T Consensus       251 ~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~------~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK------KIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE------EEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC------EEEEECCC-CCCEEEEEEECCCEEEEEECCCCEEEEEEE
T ss_conf             3543159966984479998799989999999894------98870589-998799999479999999919927883012

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=9e-30  Score=200.45  Aligned_cols=301  Identities=10%  Similarity=0.020  Sum_probs=222.4

Q ss_pred             CCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             045334624786413744889920573358999889999968999899996899--199997586447566533334872
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNK--KIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       537 ~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg--~I~iwd~~~~~~~~~~~~~~~~~~  614 (886)
                      ++....|.+.+|+....++..       .+|...|++++|+|||++|++++.+.  .|++|+..+..        .....
T Consensus        18 ~a~~~~g~v~v~d~~~~~~~~-------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--------~~~~~   82 (360)
T d1k32a3          18 IAFVSRGQAFIQDVSGTYVLK-------VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--------AEKFE   82 (360)
T ss_dssp             EEEEETTEEEEECTTSSBEEE-------CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--------EEECC
T ss_pred             EEEEECCEEEEEECCCCCEEE-------CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC--------EEEEE
T ss_conf             999989969999899994899-------169998888999899999999992899899999899994--------88750


Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEE----------CCCC
Q ss_conf             378980169980799986999628991999987886278881235874999998139999899981----------8994
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGS----------DDGS  684 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs----------~Dg~  684 (886)
                      .|...|.+++|+| ++.+|++++.++.+.+|++.+++....+..|...+.+++|+| ++.+|+.++          .++.
T Consensus        83 ~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          83 ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEE
T ss_pred             CCCCEEEEEEECC-CCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCC-CEEEEEEECCCCCCCEEECCCCC
T ss_conf             8971277412114-543210001111100000122210000001355202301213-22566521233121100025654


Q ss_pred             EEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC------CEEEEECCCCCEEE
Q ss_conf             999947503444204730344532798699998189996899993899099996589983------46999127998679
Q 002736          685 VKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI------PLCTLIGHNKTVSY  758 (886)
Q Consensus       685 v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~------~~~~~~~h~~~V~~  758 (886)
                      +++|++.+       +.......+...+.++.|+|+ ++.|++++.++.+.+||......      ....+..+...+..
T Consensus       161 ~~v~d~~~-------~~~~~~~~~~~~~~~~~~spd-g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1k32a3         161 IHVYDMEG-------RKIFAATTENSHDYAPAFDAD-SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  232 (360)
T ss_dssp             EEEEETTT-------TEEEECSCSSSBEEEEEECTT-SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             EEEECCCC-------CCEEEECCCCCCCCCCCCCCC-CCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCC
T ss_conf             26630455-------713530354322110012577-9999999599855753335440232036411798524696012


Q ss_pred             EEEC-CCCEEEEEECCC---CEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC---EEEEECCCCCEEEEECCC
Q ss_conf             9964-999899997899---499994799976656988138606788534999913999---999984999299971399
Q 002736          759 VKFV-DATTLVSASTDN---TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG---YVATGSETNEVFVYHKAF  831 (886)
Q Consensus       759 i~f~-~~~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~---~lasgs~dg~i~iwd~~~  831 (886)
                      +.|+ ++..++++..+.   ..++|.+....     .....+..+.+.+..+.+...+.   ++++++.++.+++|++..
T Consensus       233 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  307 (360)
T d1k32a3         233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDP-----GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT  307 (360)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSCCC-----BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred             CEECCCCCCCCCCCEEECCCCCCEEECCCCC-----CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf             0687776715531136526654001012476-----75267541389856999973599706999648998799997999


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEE
Q ss_conf             986101035799999988556679959999990699959999847997999970
Q 002736          832 PMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       832 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~iw~l  885 (886)
                      ++...                 +...|.+++|+||++ .|++++.||.|++|++
T Consensus       308 ~~~~~-----------------~~~~v~~~~~SpDG~-~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         308 RKVTE-----------------VKNNLTDLRLSADRK-TVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             CCEEE-----------------EEEEEEEEEECTTSC-EEEEEETTSCEEEEES
T ss_pred             CEEEE-----------------ECCCCCEEEECCCCC-EEEEEECCCEEEEEEC
T ss_conf             74988-----------------648868799999898-9999978994999999

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=4.3e-28  Score=189.82  Aligned_cols=333  Identities=9%  Similarity=0.036  Sum_probs=216.5

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEE-EE
Q ss_conf             00453346247864137448899205733589998899999689998999968991999975864475665333348-72
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV-EM  614 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~-~~  614 (886)
                      ++....+|.+++||..+.++..++..     | ..+.+++|+|||+++++++.|+.|++||+.+......   ..+. ..
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~l~~-----g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~---~~i~~~~  105 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKVIDT-----G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV---AEIKIGI  105 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEEEEC-----C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE---EEEECCS
T ss_pred             EEEECCCCEEEEEECCCCCEEEEEEC-----C-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE---EEEECCC
T ss_conf             99975999799999999959999968-----9-9803899989999999995899889997568860489---9986788


Q ss_pred             CCCCCEEEEEEECCCCCEE-EEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCC-EEEEEECCCCEEEEECCH
Q ss_conf             3789801699807999869-99628991999987886278881235874999998139999-899981899499994750
Q 002736          615 ASRSKLSSICWNSYIKSQI-ASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPT-LLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l-~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~-~l~sgs~Dg~v~iwdl~~  692 (886)
                      .|...+.++.|+| +++++ +++..++.+.+||..++.+...+..|...+..+.+.+ ++. ..++.+.|+...+|....
T Consensus       106 ~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         106 EARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP-EPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             EEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES-CCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCEEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECC-CCCEEEEEECCCCCEEEEECCC
T ss_conf             8764588500268-8987999635897699985776412578622677736436427-8850389987878788885278


Q ss_pred             HHHHHC------CCCEEEEEECCCCEEEEEEECCCCCEEEE-EECCCEEEEEECCCCCCCEEEEEC--CCCCEEEEEEC-
Q ss_conf             344420------47303445327986999981899968999-938990999965899834699912--79986799964-
Q 002736          693 AILLLH------LGVSIGTIKTKANVCCVQFPLDSGRSLAF-GSADHRIYYYDLRNSKIPLCTLIG--HNKTVSYVKFV-  762 (886)
Q Consensus       693 ~~~~~~------~~~~~~~~~~~~~v~~i~~sp~~~~~l~~-gs~dg~I~iwDl~~~~~~~~~~~~--h~~~V~~i~f~-  762 (886)
                      ......      ....+..+.....+..+.|+|+ ++++++ ...+..+.+++..+.+. ......  +........+. 
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSS-HRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTT-SCEEEEEETTCSEEEEEETTTTEE-EEEEECSSCCCCSCCEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEECCCCCCEEEEECCC-CCEEEEEEECCCCEEEEECCCCCE-EEEECCCCCCCCCCEEEEEC
T ss_conf             9769999924665204577566775376137788-867886420110000000255627-88750587444342011006


Q ss_pred             CCC-EE--EEEECCCCEEEEECCCCCCCCC-CCCCEEEECCCCCEEEEEEECCCCEEEE-------ECCCCCEEEEECCC
Q ss_conf             999-89--9997899499994799976656-9881386067885349999139999999-------84999299971399
Q 002736          763 DAT-TL--VSASTDNTLKLWDLSMCTSRVI-DTPLHSFTGHTNVKNFVGLSVWDGYVAT-------GSETNEVFVYHKAF  831 (886)
Q Consensus       763 ~~~-~l--~sgs~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las-------gs~dg~i~iwd~~~  831 (886)
                      .+. ..  ++.+.|+.+.+|+......... -....++.+|...+++++|+|++.++++       ++.|++|+|||+.+
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf             98774577415789659885225665203302586898668876367874899861888506798802288799998987


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE----ECCCCEEEEEE
Q ss_conf             9861010357999999885566799599999906999599998----47997999970
Q 002736          832 PMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAA----NSSGNIKILEM  885 (886)
Q Consensus       832 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~----~~dg~I~iw~l  885 (886)
                      ++....+.....    ......+...|.+++|+|||+.+++++    +.+|.|+||+.
T Consensus       342 ~~~~~~~~~~~~----~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         342 LDAKYQVLPIAE----WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             TTSCCEEECHHH----HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             CCCCEEEECCCH----HCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEC
T ss_conf             876708950211----025677885189879999999999997248888982999999

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1.3e-23  Score=161.41  Aligned_cols=273  Identities=13%  Similarity=0.080  Sum_probs=206.8

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             004533462478641374488992057335899988999996899989-9996899199997586447566533334872
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELF-AAAGVNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  614 (886)
                      |+++..++.+.+||..+.++.+++..+      ..+..++|+|||+++ ++++.+++|.+||+.+.        ..+...
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--------~~~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATV   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCEEEEEEECC------CCCEEEEEECCCCEEEEEECCCCEEEEEECCCC--------CEEEEE
T ss_conf             999789998999999999599999889------983699992898999999789998999999989--------410320


Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEE-EEEECCCCEEEEECCHH
Q ss_conf             37898016998079998699962899199998788627888123587499999813999989-99818994999947503
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLL-ASGSDDGSVKLWSINQA  693 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l-~sgs~Dg~v~iwdl~~~  693 (886)
                      .....+..+.|++.....++++..++.+.+|+..+++....+.. .....++.|+| ++..+ +++..++.+.+|+..+ 
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~-  147 (301)
T d1l0qa2          71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT-  147 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT-
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEEC-CCCEEEEEECCCCCEEEEECCC-
T ss_conf             00246431100011111111111110011001243024320244-44423787605-8971554201111001100014-


Q ss_pred             HHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEE
Q ss_conf             4442047303445327986999981899968999938-99099996589983469991279986799964-999899997
Q 002736          694 ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAS  771 (886)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~-dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs  771 (886)
                            ......+.....+.++.++|+ +..++++.. ++.+.+|+..... ...... ....+..+.|. ++..++.++
T Consensus       148 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~v~~  218 (301)
T d1l0qa2         148 ------KAVINTVSVGRSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNS-VIDTVK-VEAAPSGIAVNPEGTKAYVTN  218 (301)
T ss_dssp             ------TEEEEEEECCSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred             ------CCEEEECCCCCCCEEEEEECC-CCCEEEECCCCCCCCCCCCCCEE-EEECCC-CCCCCCEEECCCCCCCCCCCC
T ss_conf             ------630353156788428886046-54013101211111111111000-111013-357750311011110111100


Q ss_pred             C---CCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEE-EEECCCCCEEEEECCCCCCCEEECCC
Q ss_conf             8---9949999479997665698813860678853499991399999-99849992999713999861010357
Q 002736          772 T---DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV-ATGSETNEVFVYHKAFPMPALSFNFN  841 (886)
Q Consensus       772 ~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-asgs~dg~i~iwd~~~~~~~~~~~~~  841 (886)
                      .   ++.|.+||+.+++      .+..+..+ ..+..++|+|++++| ++++.|+.|++||+.+++.+.++..+
T Consensus       219 ~~~~~~~v~v~D~~t~~------~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg  285 (301)
T d1l0qa2         219 VDKYFNTVSMIDTGTNK------ITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG  285 (301)
T ss_dssp             ECSSCCEEEEEETTTTE------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCEEEEEEEEECCCCE------EEEEECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECC
T ss_conf             21000023236569981------99998489-987799991898999999899996999999999599999689

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.7e-23  Score=160.81  Aligned_cols=320  Identities=11%  Similarity=0.031  Sum_probs=201.7

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEE-EE
Q ss_conf             00453346247864137448899205733589998899999689998999968991999975864475665333348-72
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVV-EM  614 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~-~~  614 (886)
                      ++....+|.+.+||..+.++.+.+..+      ..+..++|+|||+++++++.|+.|++||+.+.....   ...+. ..
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g------~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~---~~~i~~~~  105 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---VAEIKIGS  105 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---EEEEECCS
T ss_pred             EEEECCCCEEEEEECCCCCEEEEEECC------CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEE---EEEEECCC
T ss_conf             999769997999989998399997379------971379988999999998289997899810898128---89984488


Q ss_pred             CCCCCEEEEEEECCCCCE-EEEECCCCCEEEEECCCCEEEEEECC-----------CCCCEEEEEECCCCCCE-EEEEEC
Q ss_conf             378980169980799986-99962899199998788627888123-----------58749999981399998-999818
Q 002736          615 ASRSKLSSICWNSYIKSQ-IASSNFEGVVQVWDVSRSQVLTEMRE-----------HERRVWSIDFSSADPTL-LASGSD  681 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~-l~s~s~Dg~V~iWd~~~~~~~~~~~~-----------h~~~V~~i~~sp~~~~~-l~sgs~  681 (886)
                      .+.+.+.+..|+| ++++ ++++..+++|++||..+++++..+..           +......+.++| ++.. +++...
T Consensus       106 ~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~  183 (432)
T d1qksa2         106 EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKE  183 (432)
T ss_dssp             EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETT
T ss_pred             CCCCEEEECCCCC-CCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECC-CCCEEEEEECC
T ss_conf             9877698432188-888899981789827999076554225402477643522016888505899878-99989999816


Q ss_pred             CCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCCCEEEEEC-----CCCC
Q ss_conf             994999947503444204730344532798699998189996899993-8990999965899834699912-----7998
Q 002736          682 DGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS-ADHRIYYYDLRNSKIPLCTLIG-----HNKT  755 (886)
Q Consensus       682 Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs-~dg~I~iwDl~~~~~~~~~~~~-----h~~~  755 (886)
                      ++.|.+|+.....     ...+..+.+...+..+.|+|+ ++++++++ .++.+.++|..+.+. ...+..     |...
T Consensus       184 ~~~i~~~d~~~~~-----~~~~~~i~~g~~~~~~~~spd-g~~~~va~~~~~~v~v~d~~~~~~-~~~~~~g~~~~~~~~  256 (432)
T d1qksa2         184 TGKILLVDYTDLN-----NLKTTEISAERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGR  256 (432)
T ss_dssp             TTEEEEEETTCSS-----EEEEEEEECCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTT
T ss_pred             CCEEEEEECCCCC-----CCEEEEECCCCCCCCCEECCC-CCEEEEECCCCCEEEEEECCCCEE-EEEECCCCCCCCCCC
T ss_conf             8829999843787-----522799833675426538898-879999516663677761445268-887214862245676


Q ss_pred             EEEEEEC-CCCEEEEEE-CCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf             6799964-999899997-89949999479997665698813860678853499991399999998499929997139998
Q 002736          756 VSYVKFV-DATTLVSAS-TDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPM  833 (886)
Q Consensus       756 V~~i~f~-~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~  833 (886)
                      .....+. .+...++.. .++.+.+|+.....          ...|...+....+++++..+++++.++..++|......
T Consensus       257 ~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~  326 (432)
T d1qksa2         257 GANFVHPTFGPVWATSHMGDDSVALIGTDPEG----------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN  326 (432)
T ss_dssp             CEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred             CCCEECCCCCCEECCCCCCCCEEEECCCCCCC----------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC
T ss_conf             64101489883102135688358762456655----------54656577799886899768887268864102112678


Q ss_pred             CCE----EECCCCCCCC---------------CCCCCCCCCCCEEEEEECCCCCCEEEEEE-----CCCCEEEEE
Q ss_conf             610----1035799999---------------98855667995999999069995999984-----799799997
Q 002736          834 PAL----SFNFNHADPL---------------SGPETDDAAQFISSVCWRGQSSNTLVAAN-----SSGNIKILE  884 (886)
Q Consensus       834 ~~~----~~~~~~~~~~---------------~~~~~~~~~~~V~~v~~~~~~~~~lvs~~-----~dg~I~iw~  884 (886)
                      +..    +..+.....+               .+.....|...|.+++|+|||. .++.+.     .+|.|+||+
T Consensus       327 ~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~-~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         327 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT-EVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS-EEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCEEEEEEEEECHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCC-EEEEEEECCCCCCCCEEEEE
T ss_conf             887703599999624610455678448633434444578998689767989999-99999704888888689999

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.1e-21  Score=149.36  Aligned_cols=262  Identities=10%  Similarity=0.104  Sum_probs=197.1

Q ss_pred             EEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEE-EEECCCCCEEEEECCCCEEEEEECCCCC
Q ss_conf             999968991999975864475665333348723789801699807999869-9962899199998788627888123587
Q 002736          583 FAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQI-ASSNFEGVVQVWDVSRSQVLTEMREHER  661 (886)
Q Consensus       583 latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l-~s~s~Dg~V~iWd~~~~~~~~~~~~h~~  661 (886)
                      +++++.+++|.+||.++.        ..+........+..++|+| +++++ ++++.++.|.+||+.+++.+..+..+. 
T Consensus         5 yV~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-   74 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN--------KVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-   74 (301)
T ss_dssp             EEEETTTTEEEEEETTTT--------EEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-
T ss_pred             EEEECCCCEEEEEECCCC--------EEEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-
T ss_conf             999789998999999999--------5999998899836999928-989999997899989999999894103200024-


Q ss_pred             CEEEEEECCCCCC-EEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf             4999998139999-899981899499994750344420473034453279869999818999689999389909999658
Q 002736          662 RVWSIDFSSADPT-LLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR  740 (886)
Q Consensus       662 ~V~~i~~sp~~~~-~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~  740 (886)
                      .+..+.|++ ++. .++++..++.+.+|+..+       ......+.....+.++.|+|++..+++++..+..+.+|+..
T Consensus        75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~  146 (301)
T d1l0qa2          75 SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTS-------NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (301)
T ss_dssp             SEEEEEECT-TSSEEEEEETTTTEEEEEETTT-------TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCCCCCCC-CCCCCCCCCCCCCEEEECCCCC-------CEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf             643110001-1111111111110011001243-------02432024444423787605897155420111100110001


Q ss_pred             CCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECC-CCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEE
Q ss_conf             9983469991279986799964-99989999789-949999479997665698813860678853499991399999998
Q 002736          741 NSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTD-NTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATG  818 (886)
Q Consensus       741 ~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasg  818 (886)
                      +... ...+. +...+..+.+. ++..+++++.+ +.+.+|+.....      ....+. .......+.+++++..++.+
T Consensus       147 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         147 TKAV-INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS------VIDTVK-VEAAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             TTEE-EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE------EEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred             CCCE-EEECC-CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEE------EEECCC-CCCCCCEEECCCCCCCCCCC
T ss_conf             4630-35315-678842888604654013101211111111111000------111013-35775031101111011110


Q ss_pred             ---CCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEE
Q ss_conf             ---4999299971399986101035799999988556679959999990699959999847997999970
Q 002736          819 ---SETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       819 ---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~iw~l  885 (886)
                         +.++.|++||..+++.+..+..              ...+.+++|+|++..++++++.|+.|++|++
T Consensus       218 ~~~~~~~~v~v~D~~t~~~~~~~~~--------------~~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTGTNKITARIPV--------------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEEEEECCCCEEEEEECC--------------CCCEEEEEEECCCCEEEEEECCCCEEEEEEC
T ss_conf             0210000232365699819999848--------------9987799991898999999899996999999

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=3.1e-24  Score=165.44  Aligned_cols=268  Identities=11%  Similarity=0.070  Sum_probs=191.5

Q ss_pred             CCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEE
Q ss_conf             62478641374488992057335899988999996899989999689919999758644756653333487237898016
Q 002736          543 GLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSS  622 (886)
Q Consensus       543 g~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~  622 (886)
                      ..+++|+..+.+..+ +     .+|...|.+++|+||+++|++++.++.+.+|+.....       .......+...+.+
T Consensus        66 ~~v~v~d~~~~~~~~-~-----~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  132 (360)
T d1k32a3          66 DFLGIYDYRTGKAEK-F-----EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-------PTVIERSREAMITD  132 (360)
T ss_dssp             EEEEEEETTTCCEEE-C-----CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECSSSCCCC
T ss_pred             CEEEEEECCCCCEEE-E-----ECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCC-------EEEEEECCCCCCCC
T ss_conf             899999899994887-5-----0897127741211454321000111110000012221-------00000013552023


Q ss_pred             EEEECCCCCEEEEEC----------CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCH
Q ss_conf             998079998699962----------8991999987886278881235874999998139999899981899499994750
Q 002736          623 ICWNSYIKSQIASSN----------FEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ  692 (886)
Q Consensus       623 i~~~~~~~~~l~s~s----------~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~  692 (886)
                      ++|+| ++.+|+.+.          .++.+++||..+++.... ..+...+..+.|+| +++.|++++.|+.+.+|+...
T Consensus       133 ~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         133 FTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSS
T ss_pred             HHHCC-CEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEE-CCCCCCCCCCCCCC-CCCEEEEEECCCCEECCCCCC
T ss_conf             01213-2256652123312110002565426630455713530-35432211001257-799999995998557533354


Q ss_pred             HHHHHCCCCEEEEEE-CCCCEEEEEEECCCCCEEEEEECCC-----EEEEEECCCCCCCEEEEECCCCCEEEEEEC-C--
Q ss_conf             344420473034453-2798699998189996899993899-----099996589983469991279986799964-9--
Q 002736          693 AILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGSADH-----RIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-D--  763 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~~gs~dg-----~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~--  763 (886)
                      .............+. +...+..+.|+++ +..++.+..+.     .+..++...+.  ...+..+...+..+.+. .  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  286 (360)
T d1k32a3         210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPR-SMTSEAGEYDLNDMYKRSSPINVDPGD--YRMIIPLESSILIYSVPVHGE  286 (360)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCG-GGSCCCCCCCCTTGGGGCEECSCCCBC--EEEEEECSSEEEEEECCCCCS
T ss_pred             CCEEECCCCCEEEEECCCCCCCCCEECCC-CCCCCCCCEEECCCCCCEEECCCCCCC--EEEEEECCCCCEEEEEEECCC
T ss_conf             40232036411798524696012068777-671553113652665400101247675--267541389856999973599


Q ss_pred             -CCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEC
Q ss_conf             -9989999789949999479997665698813860678853499991399999998499929997139998610103
Q 002736          764 -ATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFN  839 (886)
Q Consensus       764 -~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~  839 (886)
                       ..++++++.++.|++||+.+.+       +..   |...+..++|+||+++|++++.||.|++|++..++...++.
T Consensus       287 ~~~~~~~~~~~~~i~~~d~~~~~-------~~~---~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         287 FAAYYQGAPEKGVLLKYDVKTRK-------VTE---VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCC-------EEE---EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             CEEEEEECCCCCEEEEEECCCCE-------EEE---ECCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEE
T ss_conf             70699964899879999799974-------988---64886879999989899999789949999999998545998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=4.8e-22  Score=151.56  Aligned_cols=280  Identities=11%  Similarity=0.045  Sum_probs=195.4

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCCCCC-CCCCCEEE
Q ss_conf             004533462478641374488992057335899988999996899989-9996899199997586447566-53333487
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELF-AAAGVNKKIKVFECDAIINENR-DIHYPVVE  613 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~-~~~~~~~~  613 (886)
                      ++.+..|+.+++||..+.++...+...   .+...+.+++|+|||+++ ++++.++.|.+||+.+...... ....+   
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~---~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~---   77 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---   77 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---
T ss_pred             EEEECCCCEEEEEECCCCEEEEEEECC---CCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC---
T ss_conf             999767998999999999499999877---88998237999999899999978999499999999929888724777---


Q ss_pred             ECCCCCEEEEEEECCCCCEEEEEC------------CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             237898016998079998699962------------89919999878862788812358749999981399998999818
Q 002736          614 MASRSKLSSICWNSYIKSQIASSN------------FEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD  681 (886)
Q Consensus       614 ~~~~~~I~~i~~~~~~~~~l~s~s------------~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~  681 (886)
                      ..+...+..+.|+| ++..++++.            .++.+.+||..+++....+.. ...+.++.|+| ++.++++++.
T Consensus        78 ~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~  154 (337)
T d1pbyb_          78 EERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR  154 (337)
T ss_dssp             TEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS
T ss_pred             CCCCCCEEEEEECC-CCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECC-CCCEEEEECC
T ss_conf             31254025489868-775799950477620342034555212035667759884145-68721899868-8888999717


Q ss_pred             CCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCC-----------------------CCEEEEEECCCEEEEEE
Q ss_conf             9949999475034442047303445327986999981899-----------------------96899993899099996
Q 002736          682 DGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDS-----------------------GRSLAFGSADHRIYYYD  738 (886)
Q Consensus       682 Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-----------------------~~~l~~gs~dg~I~iwD  738 (886)
                      +  +.+||...       ......+..........+.|+.                       ......++.++.+.+||
T Consensus       155 ~--~~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         155 D--LHVMDPEA-------GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             S--EEEEETTT-------TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             C--CCEEEEEC-------CCEEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEE
T ss_conf             7--50566303-------72788861477543311357763140146653124663244410366045403676179998


Q ss_pred             CCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf             589983469991279986799964-9998999978994999947999766569881386067885349999139999999
Q 002736          739 LRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVAT  817 (886)
Q Consensus       739 l~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las  817 (886)
                      ..++......+..+...+..+.+. ++..++.+  ++.|++||+.+..      .+..+. +...+.+++|+|+|+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~------~~~~~~-~~~~~~~~~~s~dG~~l~v  296 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA------SIKRVP-LPHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE------EEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred             CCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCC------EEEEEC-CCCCEEEEEECCCCCEEEE
T ss_conf             688858889832887505888742661399973--5528999898896------999974-8998899999789999999


Q ss_pred             ECCCCCEEEEECCCCCCCEEECCCC
Q ss_conf             8499929997139998610103579
Q 002736          818 GSETNEVFVYHKAFPMPALSFNFNH  842 (886)
Q Consensus       818 gs~dg~i~iwd~~~~~~~~~~~~~~  842 (886)
                      ++.|+.|++||..+.+.+.+++...
T Consensus       297 ~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         297 GGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             ESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             EECCCCEEEEECCCCCEEEEEECCC
T ss_conf             9499929999999876989998899

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3.2e-21  Score=146.32  Aligned_cols=265  Identities=10%  Similarity=0.021  Sum_probs=192.0

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEE-EEECCCCCEEEEECCCCEEEEEECCC
Q ss_conf             98999968991999975864475665333348723789801699807999869-99628991999987886278881235
Q 002736          581 ELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQI-ASSNFEGVVQVWDVSRSQVLTEMREH  659 (886)
Q Consensus       581 ~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l-~s~s~Dg~V~iWd~~~~~~~~~~~~h  659 (886)
                      +|++|++.|++|+|||..+..     ....+....+...+.+++|+| +++++ ++++.++.|.+||+.+++.+..+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~-----~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA-----VDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE-----EEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEECCCCEEEEEECCCCE-----EEEEEECCCCCCCCCEEEECC-CCCEEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf             699997679989999999994-----999998778899823799999-98999999789994999999999298887247


Q ss_pred             C-----CCEEEEEECCCCCCEEEEEE------------CCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf             8-----74999998139999899981------------899499994750344420473034453279869999818999
Q 002736          660 E-----RRVWSIDFSSADPTLLASGS------------DDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSG  722 (886)
Q Consensus       660 ~-----~~V~~i~~sp~~~~~l~sgs------------~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  722 (886)
                      .     ..+..+.|+| ++..++++.            .+..+.+||..+       ......+.....+.+++|+|+ +
T Consensus        76 ~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~~~~~~~~~~~~s~d-g  146 (337)
T d1pbyb_          76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAET-------LSRRKAFEAPRQITMLAWARD-G  146 (337)
T ss_dssp             BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-------TEEEEEEECCSSCCCEEECTT-S
T ss_pred             CCCCCCCCEEEEEECC-CCCEEEEEECCCCCEEEECCCCCCCEEECCCCC-------CEEEEECCCCCCCEEEEECCC-C
T ss_conf             7731254025489868-775799950477620342034555212035667-------759884145687218998688-8


Q ss_pred             CEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEE------EEEE------------------CCCCEEEEEECCCCEEE
Q ss_conf             68999938990999965899834699912799867------9996------------------49998999978994999
Q 002736          723 RSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVS------YVKF------------------VDATTLVSASTDNTLKL  778 (886)
Q Consensus       723 ~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~------~i~f------------------~~~~~l~sgs~Dg~I~i  778 (886)
                      .++++++.  .+.+||..+.+. ...+..+.....      ...+                  .+......++.++.+.+
T Consensus       147 ~~l~~~~~--~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         147 SKLYGLGR--DLHVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             SCEEEESS--SEEEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             CEEEEECC--CCCEEEEECCCE-EEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEE
T ss_conf             88999717--750566303727-888614775433113577631401466531246632444103660454036761799


Q ss_pred             EECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf             94799976656988138606788534999913999999984999299971399986101035799999988556679959
Q 002736          779 WDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFI  858 (886)
Q Consensus       779 wd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  858 (886)
                      |+...+..     ....+..+......+.+++++.+++.+  ++.+++||+..++.+..+...              ..+
T Consensus       224 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~--------------~~~  282 (337)
T d1pbyb_         224 MDLETGEM-----AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--------------HSY  282 (337)
T ss_dssp             EETTTCCE-----EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--------------SCC
T ss_pred             EECCCCCE-----EEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEECCC--------------CCE
T ss_conf             98688858-----889832887505888742661399973--552899989889699997489--------------988


Q ss_pred             EEEEECCCCCCEEEEEECCCCEEEEEE
Q ss_conf             999990699959999847997999970
Q 002736          859 SSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       859 ~~v~~~~~~~~~lvs~~~dg~I~iw~l  885 (886)
                      .+++|+|++. .|++++.||.|.+|+.
T Consensus       283 ~~~~~s~dG~-~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         283 YSVNVSTDGS-TVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CEEEECTTSC-EEEEESBSSEEEEEET
T ss_pred             EEEEECCCCC-EEEEEECCCCEEEEEC
T ss_conf             9999978999-9999949992999999

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.2e-20  Score=142.77  Aligned_cols=295  Identities=7%  Similarity=-0.026  Sum_probs=184.8

Q ss_pred             CCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCCCCCCC----CCCE
Q ss_conf             045334624786413744889920573358999889999968999899-99689919999758644756653----3334
Q 002736          537 INPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFA-AAGVNKKIKVFECDAIINENRDI----HYPV  611 (886)
Q Consensus       537 ~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~la-tg~~dg~I~iwd~~~~~~~~~~~----~~~~  611 (886)
                      ..+..|+.+++|+..+.+.....+-....+|.+.+.++.|+|||++++ ++..++.+.+||..+........    ....
T Consensus        77 ~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~  156 (426)
T d1hzua2          77 LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  156 (426)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCC
T ss_conf             99958998899975688604899986788876458850026889879996358976999857764125786226777364


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEE-EEEECCCCCCEEEEEECCCCCCEEEEE-ECCCCEEEEE
Q ss_conf             87237898016998079998699962899199998788627-888123587499999813999989998-1899499994
Q 002736          612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASG-SDDGSVKLWS  689 (886)
Q Consensus       612 ~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~-~~~~~~h~~~V~~i~~sp~~~~~l~sg-s~Dg~v~iwd  689 (886)
                      ....+......+.+++.....+.+....+.+.+++...... ......+...++.+.|+| ++.+++++ ..+..+.+|+
T Consensus       157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~~~~  235 (426)
T d1hzua2         157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-SHRYFMTAANNSNKVAVID  235 (426)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-TSCEEEEEETTCSEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECC-CCCEEEEEEECCCCEEEEE
T ss_conf             364278850389987878788885278976999992466520457756677537613778-8867886420110000000


Q ss_pred             CCHHHHHHCCCCEEEEEECC---CCEEEEEEECCCCCEEE--EEECCCEEEEEECCCCC------CCEEEEECCCCCEEE
Q ss_conf             75034442047303445327---98699998189996899--99389909999658998------346999127998679
Q 002736          690 INQAILLLHLGVSIGTIKTK---ANVCCVQFPLDSGRSLA--FGSADHRIYYYDLRNSK------IPLCTLIGHNKTVSY  758 (886)
Q Consensus       690 l~~~~~~~~~~~~~~~~~~~---~~v~~i~~sp~~~~~l~--~gs~dg~I~iwDl~~~~------~~~~~~~~h~~~V~~  758 (886)
                      ..+       ...+......   .......+.+.....+.  ..+.|+.+.+|+.....      .....+.+|...+..
T Consensus       236 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~  308 (426)
T d1hzua2         236 SKD-------RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF  308 (426)
T ss_dssp             TTT-------TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC
T ss_pred             CCC-------CCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEE
T ss_conf             255-------6278875058744434201100698774577415789659885225665203302586898668876367


Q ss_pred             EEEC-CCCEEE-------EEECCCCEEEEECCCCCCCCCCCCCE---EEECCCCCEEEEEEECCCCEEE-EE----CCCC
Q ss_conf             9964-999899-------99789949999479997665698813---8606788534999913999999-98----4999
Q 002736          759 VKFV-DATTLV-------SASTDNTLKLWDLSMCTSRVIDTPLH---SFTGHTNVKNFVGLSVWDGYVA-TG----SETN  822 (886)
Q Consensus       759 i~f~-~~~~l~-------sgs~Dg~I~iwd~~~~~~~~~~~~~~---~~~~h~~~v~~v~~sp~~~~la-sg----s~dg  822 (886)
                      ++|+ ++..++       +++.|++|++||+.++.......++.   .+..|...+..++|||+|++++ ++    +.++
T Consensus       309 v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~  388 (426)
T d1hzua2         309 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS  388 (426)
T ss_dssp             EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCC
T ss_pred             EECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCC
T ss_conf             87489986188850679880228879999898787670895021102567788518987999999999999724888898


Q ss_pred             CEEEEECCCCCCCEEEC
Q ss_conf             29997139998610103
Q 002736          823 EVFVYHKAFPMPALSFN  839 (886)
Q Consensus       823 ~i~iwd~~~~~~~~~~~  839 (886)
                      .|+|||..+.+....++
T Consensus       389 ~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         389 ALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             EEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCEEEEEEC
T ss_conf             29999999873899987

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=6.8e-21  Score=144.24  Aligned_cols=285  Identities=11%  Similarity=0.005  Sum_probs=172.8

Q ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf             1004533462478641374488992057335899988999996899989-999689919999758644756653333487
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELF-AAAGVNKKIKVFECDAIINENRDIHYPVVE  613 (886)
Q Consensus       535 ~~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~~~~  613 (886)
                      .++.+..++.+.+||..+.++..+++    ..|...+.++.|+|||+++ +++..++.|.+||+.+....... ......
T Consensus        10 ~l~~~~~~~~v~v~D~~t~~~~~t~~----~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~-~~~~~~   84 (346)
T d1jmxb_          10 YMIVTNYPNNLHVVDVASDTVYKSCV----MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA-NLSSVP   84 (346)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEE----CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ESCCST
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEE----CCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEE-CCCCCC
T ss_conf             99998699979999999998999999----4899970459997898999999789993999967567131231-036543


Q ss_pred             ECCCCCEEEEEEECCCCCEEEEEC------------CCCCEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCCEEEEE
Q ss_conf             237898016998079998699962------------899199998788627888123--587499999813999989998
Q 002736          614 MASRSKLSSICWNSYIKSQIASSN------------FEGVVQVWDVSRSQVLTEMRE--HERRVWSIDFSSADPTLLASG  679 (886)
Q Consensus       614 ~~~~~~I~~i~~~~~~~~~l~s~s------------~Dg~V~iWd~~~~~~~~~~~~--h~~~V~~i~~sp~~~~~l~sg  679 (886)
                      ..+...+..+.|+| ++.++++++            .++.+.+|+..+++....+..  ....+..+.+++ ++..++++
T Consensus        85 ~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  162 (346)
T d1jmxb_          85 GEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVAG  162 (346)
T ss_dssp             TEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEES
T ss_pred             CCCCCCEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECC-CCEEEEEC
T ss_conf             45477417999905-88889997057752156514676248998525632656887310247439999527-87899847


Q ss_pred             ECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCC-------------------------CCEEEEEECCCEE
Q ss_conf             189949999475034442047303445327986999981899-------------------------9689999389909
Q 002736          680 SDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDS-------------------------GRSLAFGSADHRI  734 (886)
Q Consensus       680 s~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-------------------------~~~l~~gs~dg~I  734 (886)
                         +.+.+|++.+       ......+........+.++|+.                         ...++++..++.+
T Consensus       163 ---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         163 ---PDIYKMDVKT-------GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  232 (346)
T ss_dssp             ---SSEEEECTTT-------CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             ---CCCEEEECCC-------CCEEEEEECCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEE
T ss_conf             ---9626998069-------978999964898662377125528999864998167651231112673257540478349


Q ss_pred             EEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC
Q ss_conf             9996589983469991279986799964-999899997899499994799976656988138606788534999913999
Q 002736          735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG  813 (886)
Q Consensus       735 ~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  813 (886)
                      .+||+.+..........+...+..+.++ ++..++++. ++.+.+||..+.+      .+..+. +...+.+++|+|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~------~~~~~~-~~~~~~~va~s~DG~  304 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRK------LIKAAN-LDHTYYCVAFDKKGD  304 (346)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTE------EEEEEE-CSSCCCEEEECSSSS
T ss_pred             EEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCC------EEEEEC-CCCCEEEEEECCCCC
T ss_conf             99977788368787631566068889717997899942-9838999899993------999974-999778999968999


Q ss_pred             EEEEECCCCCEEEEECCCCCCCEEECCCCCC
Q ss_conf             9999849992999713999861010357999
Q 002736          814 YVATGSETNEVFVYHKAFPMPALSFNFNHAD  844 (886)
Q Consensus       814 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~  844 (886)
                      ++++++.|+.|++||..+.+.+..++.+..+
T Consensus       305 ~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         305 KLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             EEEEEECCCCEEEEECCCCCEEEEEECCCCC
T ss_conf             9999948992999999658797999889998

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.1e-19  Score=136.67  Aligned_cols=281  Identities=11%  Similarity=0.058  Sum_probs=173.2

Q ss_pred             CCCCCCEEEEEECCCE--EEEEECCCCCCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCCCCCC----CCCCE
Q ss_conf             5334624786413744--88992057335899988999996899989-99968991999975864475665----33334
Q 002736          539 PFLEGLCKYLSFSKLR--VKADLNQGDLLNSSNLVCSLSFDRDGELF-AAAGVNKKIKVFECDAIINENRD----IHYPV  611 (886)
Q Consensus       539 ~~~dg~~~~~~~~~~~--~~~~l~~~~l~~h~~~V~si~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~----~~~~~  611 (886)
                      +..|+.+.+|+..+.+  ...+++.+  .+|.+.+.+..|+|||+++ +++..++.|++||..+.......    .....
T Consensus        79 ~s~dg~v~~~d~~t~~~~~~~~i~~~--~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~  156 (432)
T d1qksa2          79 IGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE  156 (432)
T ss_dssp             EETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred             ECCCCCEEEEEEECCCCEEEEEEECC--CCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCC
T ss_conf             82899978998108981288998448--8987769843218888889998178982799907655422540247764352


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCCEEEEEE-CCCCEEEEE
Q ss_conf             8723789801699807999869996289919999878862788812-35874999998139999899981-899499994
Q 002736          612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMR-EHERRVWSIDFSSADPTLLASGS-DDGSVKLWS  689 (886)
Q Consensus       612 ~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~-~h~~~V~~i~~sp~~~~~l~sgs-~Dg~v~iwd  689 (886)
                      ....+......+.+++.....+++...++.|.+||..+.+...... .+...+.++.|+| +++++++++ .+..+.+|+
T Consensus       157 ~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d  235 (432)
T d1qksa2         157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVID  235 (432)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECC-CCCEEEEECCCCCEEEEEE
T ss_conf             201688850589987899989999816882999984378752279983367542653889-8879999516663677761


Q ss_pred             CCHHHHHHCCCCEEEEEEC------CCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCC------CEEEEEC-----
Q ss_conf             7503444204730344532------798699998189996899993-899099996589983------4699912-----
Q 002736          690 INQAILLLHLGVSIGTIKT------KANVCCVQFPLDSGRSLAFGS-ADHRIYYYDLRNSKI------PLCTLIG-----  751 (886)
Q Consensus       690 l~~~~~~~~~~~~~~~~~~------~~~v~~i~~sp~~~~~l~~gs-~dg~I~iwDl~~~~~------~~~~~~~-----  751 (886)
                      ...       ......+..      ........+... +...++.. .++.|.+|+......      .......     
T Consensus       236 ~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~  307 (432)
T d1qksa2         236 TKE-------GKLVAIEDTGGQTPHPGRGANFVHPTF-GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS  307 (432)
T ss_dssp             TTT-------TEEEEEEECSSSSBCCTTCEEEEETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred             CCC-------CEEEEEECCCCCCCCCCCCCCEECCCC-CCEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCE
T ss_conf             445-------268887214862245676641014898-831021356883587624566555465657779988689976


Q ss_pred             --------------------CCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf             --------------------799867999649998999978994999947999766569881386067885349999139
Q 002736          752 --------------------HNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW  811 (886)
Q Consensus       752 --------------------h~~~V~~i~f~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  811 (886)
                                          |.....++++.++..+++++.|+++++|++.+.         ..+..|...+..++|+|+
T Consensus       308 ~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~---------~~l~~~~~~v~~~~fS~D  378 (432)
T d1qksa2         308 LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW---------AGITEGQPRVVQGEFNKD  378 (432)
T ss_dssp             CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH---------HTCCSSCCEEEEEEECTT
T ss_pred             EEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCCCCCEEECCCCCC---------CCCCCCCCCEEEEEECCC
T ss_conf             88872688641021126788877035999996246104556784486334344---------445789986897679899


Q ss_pred             CCEEEEEC-----CCCCEEEEECCCCCCCEEEC
Q ss_conf             99999984-----99929997139998610103
Q 002736          812 DGYVATGS-----ETNEVFVYHKAFPMPALSFN  839 (886)
Q Consensus       812 ~~~lasgs-----~dg~i~iwd~~~~~~~~~~~  839 (886)
                      |++++.+.     .++.|.|||..+.+....++
T Consensus       379 G~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~  411 (432)
T d1qksa2         379 GTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  411 (432)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEEECCCCCCCCEEEEECCCCEEEEEEC
T ss_conf             999999970488888868999999955886846

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=6.3e-21  Score=144.46  Aligned_cols=274  Identities=14%  Similarity=0.098  Sum_probs=193.0

Q ss_pred             EEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEE-EEECCCCCEEEEECCCCEE
Q ss_conf             999689998999968991999975864475665333348723789801699807999869-9962899199998788627
Q 002736          574 LSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQI-ASSNFEGVVQVWDVSRSQV  652 (886)
Q Consensus       574 i~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l-~s~s~Dg~V~iWd~~~~~~  652 (886)
                      ++|+++++++++++.++.|.+||+.+..      ......+.+...+.+++|+| ++.++ +++..++.|.+||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~------~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT------VYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE------EEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCC------EEEEEECCCCCCCCEEEECC-CCCEEEEEECCCCCEEEEECCCCEE
T ss_conf             5588999699998699979999999998------99999948999704599978-9899999978999399996756713


Q ss_pred             EEEECCC------CCCEEEEEECCCCCCEEEEEE------------CCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEE
Q ss_conf             8881235------874999998139999899981------------8994999947503444204730344532798699
Q 002736          653 LTEMREH------ERRVWSIDFSSADPTLLASGS------------DDGSVKLWSINQAILLLHLGVSIGTIKTKANVCC  714 (886)
Q Consensus       653 ~~~~~~h------~~~V~~i~~sp~~~~~l~sgs------------~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~  714 (886)
                      +..+...      ...+..+.|+| +++++++++            .++.+.+|+..+...    ...+........+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~  149 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE----AKPVRTFPMPRQVYL  149 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG----BCCSEEEECCSSCCC
T ss_pred             EEEECCCCCCCCCCCCEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEE----EEEEEEEECCCCEEE
T ss_conf             123103654345477417999905-888899970577521565146762489985256326----568873102474399


Q ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCC---------------------EE----EEEEC-CCCEEE
Q ss_conf             99818999689999389909999658998346999127998---------------------67----99964-999899
Q 002736          715 VQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKT---------------------VS----YVKFV-DATTLV  768 (886)
Q Consensus       715 i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~---------------------V~----~i~f~-~~~~l~  768 (886)
                      +.++++ +.++++   +..+.+|++.+.+. +..+..+...                     +.    ...+. ....++
T Consensus       150 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (346)
T d1jmxb_         150 MRAADD-GSLYVA---GPDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  224 (346)
T ss_dssp             EEECTT-SCEEEE---SSSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             EEECCC-CEEEEE---CCCCEEEECCCCCE-EEEEECCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEE
T ss_conf             995278-789984---79626998069978-9999648986623771255289998649981676512311126732575


Q ss_pred             EEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCC
Q ss_conf             99789949999479997665698813860678853499991399999998499929997139998610103579999998
Q 002736          769 SASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSG  848 (886)
Q Consensus       769 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  848 (886)
                      ++..++.+.+||+.....     .......|...+..+.+++++.+++.+.. +.|.+||...++.+..+...       
T Consensus       225 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~-------  291 (346)
T d1jmxb_         225 TADLLYGYLSVDLKTGKT-----HTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLD-------  291 (346)
T ss_dssp             CCEEEEEEEEEETTTCCE-----EEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECS-------
T ss_pred             ECCCCCEEEEEECCCCCE-----EEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCC-------
T ss_conf             404783499997778836-----87876315660688897179978999429-83899989999399997499-------


Q ss_pred             CCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEE
Q ss_conf             8556679959999990699959999847997999970
Q 002736          849 PETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM  885 (886)
Q Consensus       849 ~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~iw~l  885 (886)
                             ..+.+++|+||+. .|++++.||.|++|+.
T Consensus       292 -------~~~~~va~s~DG~-~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         292 -------HTYYCVAFDKKGD-KLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             -------SCCCEEEECSSSS-CEEEESBSSEEEEEET
T ss_pred             -------CCEEEEEECCCCC-EEEEEECCCCEEEEEC
T ss_conf             -------9778999968999-9999948992999999

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-18  Score=129.12  Aligned_cols=284  Identities=11%  Similarity=0.079  Sum_probs=182.7

Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             0045334624786413744889920573358999889999968999899996-899199997586447566533334872
Q 002736          536 WINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAG-VNKKIKVFECDAIINENRDIHYPVVEM  614 (886)
Q Consensus       536 ~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~  614 (886)
                      |+++..++.+++|++........++.   ..|.+.|.+++|+|||++|++++ .|+.|++|++......    .......
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~---~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~----~~~~~~~   79 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQV---VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----LTFAAES   79 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEE---EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----EEEEEEE
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEE---ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCC----EEEEEEC
T ss_conf             99878999389999839997699999---7579988689995897999999778996999999689870----7985301


Q ss_pred             CCCCCEEEEEEECCCCCEEEEECC-CCCEEEEECCCCEEEE--EECCCCCCEEEEEECCCCCCEEEEEE-CCCCEEEEEC
Q ss_conf             378980169980799986999628-9919999878862788--81235874999998139999899981-8994999947
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNF-EGVVQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGS-DDGSVKLWSI  690 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~-Dg~V~iWd~~~~~~~~--~~~~h~~~V~~i~~sp~~~~~l~sgs-~Dg~v~iwdl  690 (886)
                      .....+..++|+| +++++++++. ++.|.+|+........  ....+...+.++.++| ++..++.++ .+..+.+|+.
T Consensus        80 ~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          80 ALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             ECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEE
T ss_pred             CCCCCCEEEEECC-CCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEE-CCEEEECCCCCCCEEEEEEE
T ss_conf             3699854999959-998874205688830220011100000010037785314988630-10131025655420568973


Q ss_pred             CHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEE---EEE------CCCCCEEEEEE
Q ss_conf             503444204730344532798699998189996899993899099996589983469---991------27998679996
Q 002736          691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC---TLI------GHNKTVSYVKF  761 (886)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~---~~~------~h~~~V~~i~f  761 (886)
                      ........................+.|+++....+.+....+...+|+.......+.   ...      ........+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             CCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf             26874100100013340388752799960201478620466721788510355520210022343068776553126899


Q ss_pred             C-CCCEEEE-EECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEE-CCCCCEEEEECCC
Q ss_conf             4-9998999-9789949999479997665698813860678853499991399999998-4999299971399
Q 002736          762 V-DATTLVS-ASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATG-SETNEVFVYHKAF  831 (886)
Q Consensus       762 ~-~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasg-s~dg~i~iwd~~~  831 (886)
                      + +++.++. +..++.+.+|++......   ..+.........+..++|+|+|++|+++ +.++.|.+|++..
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSV---LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCC---EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             ECCCCCEEEECCCCCEEEEEEECCCCCE---EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEC
T ss_conf             5156720550456882787887399978---999999678997628999079899999988999399999979

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=7.4e-18  Score=125.04  Aligned_cols=279  Identities=11%  Similarity=0.101  Sum_probs=182.2

Q ss_pred             EEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEE-EEECCCCCEEEEECCCCEEEEEE---C
Q ss_conf             8999968991999975864475665333348723789801699807999869-99628991999987886278881---2
Q 002736          582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQI-ASSNFEGVVQVWDVSRSQVLTEM---R  657 (886)
Q Consensus       582 ~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l-~s~s~Dg~V~iWd~~~~~~~~~~---~  657 (886)
                      .++++..|++|++|+++....     ...+....+.+.+..++|+| ++++| +++..|+.|.+|++........+   .
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~-----l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA-----LTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC-----EEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEECCCCCCEEEEEECCCCC-----EEEEEEECCCCCEEEEEEEC-CCCEEEEEECCCCEEEEEEEECCCCCEEEEEEC
T ss_conf             999878999389999839997-----69999975799886899958-979999997789969999996898707985301


Q ss_pred             CCCCCEEEEEECCCCCCEEEEEE-CCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEE-CCCEEE
Q ss_conf             35874999998139999899981-8994999947503444204730344532798699998189996899993-899099
Q 002736          658 EHERRVWSIDFSSADPTLLASGS-DDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS-ADHRIY  735 (886)
Q Consensus       658 ~h~~~V~~i~~sp~~~~~l~sgs-~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs-~dg~I~  735 (886)
                      .+...+..++|+| ++++|++++ .++.|.+|+......    ........+...+.++.++|+ ++.+++++ .+..|.
T Consensus        80 ~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~v~~s~d-~~~~~~~~~~~~~i~  153 (333)
T d1ri6a_          80 ALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCHSANISPD-NRTLWVPALKQDRIC  153 (333)
T ss_dssp             ECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBCCCEECTT-SSEEEEEEGGGTEEE
T ss_pred             CCCCCCEEEEECC-CCCEEEECCCCCCCEEEECCCCCCC----EECCCCCCCCCCCEEEEEEEC-CEEEECCCCCCCEEE
T ss_conf             3699854999959-9988742056888302200111000----000100377853149886301-013102565542056


Q ss_pred             EEECCCCCCCEEE-----EECCCCCEEEEEEC-CCCEEEEEE-CCCCEEEEECCCCCCCCCCCCCEEEE------CCCCC
Q ss_conf             9965899834699-----91279986799964-999899997-89949999479997665698813860------67885
Q 002736          736 YYDLRNSKIPLCT-----LIGHNKTVSYVKFV-DATTLVSAS-TDNTLKLWDLSMCTSRVIDTPLHSFT------GHTNV  802 (886)
Q Consensus       736 iwDl~~~~~~~~~-----~~~h~~~V~~i~f~-~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~  802 (886)
                      +|+..........     ..........+.|+ ++..++... ..+...+|+........  .......      .....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  231 (333)
T d1ri6a_         154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI--ECVQTLDMMPENFSDTRW  231 (333)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC--EEEEEEECSCTTCCSCCC
T ss_pred             EEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCE--EEEEEEEEEECCCCCCCC
T ss_conf             897326874100100013340388752799960201478620466721788510355520--210022343068776553


Q ss_pred             EEEEEEECCCCEE-EEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE-CCCCE
Q ss_conf             3499991399999-998499929997139998610103579999998855667995999999069995999984-79979
Q 002736          803 KNFVGLSVWDGYV-ATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAAN-SSGNI  880 (886)
Q Consensus       803 v~~v~~sp~~~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~-~dg~I  880 (886)
                      ...+.++++++++ +++..++.+.+|+.............          ......+.+++|+||++ .|++++ .++.|
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~p~~~a~spDGk-~l~va~~~~~~v  300 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF----------QPTETQPRGFNVDHSGK-YLIAAGQKSHHI  300 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE----------EECSSSCCCEEECTTSS-EEEEECTTTCEE
T ss_pred             CEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEE----------ECCCCCEEEEEEECCCC-EEEEEECCCCEE
T ss_conf             1268995156720550456882787887399978999999----------67899762899907989-999998899939


Q ss_pred             EEEEE
Q ss_conf             99970
Q 002736          881 KILEM  885 (886)
Q Consensus       881 ~iw~l  885 (886)
                      ++|++
T Consensus       301 ~v~~i  305 (333)
T d1ri6a_         301 SVYEI  305 (333)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99999

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=1.4e-16  Score=116.98  Aligned_cols=272  Identities=8%  Similarity=-0.069  Sum_probs=168.4

Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             34624786413744889920573358999889999968999899996----------89919999758644756653333
Q 002736          541 LEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAG----------VNKKIKVFECDAIINENRDIHYP  610 (886)
Q Consensus       541 ~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~----------~dg~I~iwd~~~~~~~~~~~~~~  610 (886)
                      ..+.+.+|+..+.+....+..+     ..  ..+.|+|||+++++++          .++.|.+||..+...........
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~-----~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~  117 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGG-----FL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD  117 (373)
T ss_pred             CCCEEEEEECCCCCEEEEEECC-----CC--CCEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf             8765999989999799999579-----88--6079868999899996057753212453189999777893888972688


Q ss_pred             EEEECCCCCEEEEEEECCCCCEEEEE--CCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf             48723789801699807999869996--2899199998788627888123587499999813999989998189949999
Q 002736          611 VVEMASRSKLSSICWNSYIKSQIASS--NFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW  688 (886)
Q Consensus       611 ~~~~~~~~~I~~i~~~~~~~~~l~s~--s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iw  688 (886)
                      ............+.|++ ++..++..  ..++.+.+|+....+.....    ....++.++|.....+++.+.|+.+.+|
T Consensus       118 ~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~  192 (373)
T d2madh_         118 APRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             CCEEEECCCCCCEEEEE-CCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf             51368516897089985-899379999869874677623687289982----4520699962899199999479939999


Q ss_pred             ECCHHHHHHCCCCEEEEEEC-------CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCC-EEEEECCCCC-----
Q ss_conf             47503444204730344532-------7986999981899968999938990999965899834-6999127998-----
Q 002736          689 SINQAILLLHLGVSIGTIKT-------KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIP-LCTLIGHNKT-----  755 (886)
Q Consensus       689 dl~~~~~~~~~~~~~~~~~~-------~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~-~~~~~~h~~~-----  755 (886)
                      +....       ........       ......+.+.++ + .++..+.++.+.+|+....... ......+...     
T Consensus       193 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (373)
T d2madh_         193 DHAGG-------AAGAGLVGAMLTAAQNLLTQPAQANKS-G-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT  263 (373)
T ss_pred             ECCCC-------EEEEEEEEECCCCCCCCEEEEEEECCC-C-EEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEE
T ss_conf             74774-------266788630036675304345887899-4-29992589659999768990789776305647578664


Q ss_pred             -----EEEEE-----------ECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC--EEEE
Q ss_conf             -----67999-----------64999899997899499994799976656988138606788534999913999--9999
Q 002736          756 -----VSYVK-----------FVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVAT  817 (886)
Q Consensus       756 -----V~~i~-----------f~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las  817 (886)
                           ...+.           ...+..+++...++.+.+||..++.      .+..+ .+...+..++|+||++  ++++
T Consensus       264 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~------~~~~~-~~~~~~~~~a~spDG~~~l~vt  336 (373)
T d2madh_         264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ------TSSQI-SLGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             ECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC------EEEEE-CCCCCEEEEEECCCCCEEEEEE
T ss_conf             1367413357714997599954888247862589869999899996------98986-6899825899998999899999


Q ss_pred             ECCCCCEEEEECCCCCCCEEECC
Q ss_conf             84999299971399986101035
Q 002736          818 GSETNEVFVYHKAFPMPALSFNF  840 (886)
Q Consensus       818 gs~dg~i~iwd~~~~~~~~~~~~  840 (886)
                      ++.|+.|++||+.+++.+.++..
T Consensus       337 ~~~d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         337 SAGTEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             ECCCCEEEEEECCCCCEEEEECC
T ss_conf             67999299999999989999888

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=6e-16  Score=112.96  Aligned_cols=281  Identities=9%  Similarity=-0.004  Sum_probs=184.0

Q ss_pred             CCCCCCEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEC--
Q ss_conf             5899988999996899989999-----689919999758644756653333487237898016998079998699962--
Q 002736          565 LNSSNLVCSLSFDRDGELFAAA-----GVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSN--  637 (886)
Q Consensus       565 ~~h~~~V~si~fs~dg~~latg-----~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s--  637 (886)
                      ..+..++.+++++|||+.++..     +..+.+.+||..+..        .+.... .+....+.|+| ++.+++++.  
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~--------~~~~~~-~~~~~~~a~Sp-DG~~l~va~~~   86 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS--------ILGHVN-GGFLPNPVAAH-SGSEFALASTS   86 (373)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC--------EEEEEE-CCCCCCEEECC-CCCEEEEEEEC
T ss_conf             567898656301899978999734225787659999899997--------999995-79886079868-99989999605


Q ss_pred             --------CCCCEEEEECCCCEEEEEECCCCCCE-------EEEEECCCCCCEEEEE--ECCCCEEEEECCHHHHHHCCC
Q ss_conf             --------89919999878862788812358749-------9999813999989998--189949999475034442047
Q 002736          638 --------FEGVVQVWDVSRSQVLTEMREHERRV-------WSIDFSSADPTLLASG--SDDGSVKLWSINQAILLLHLG  700 (886)
Q Consensus       638 --------~Dg~V~iWd~~~~~~~~~~~~h~~~V-------~~i~~sp~~~~~l~sg--s~Dg~v~iwdl~~~~~~~~~~  700 (886)
                              .++.|.+||..+++.+..+..+....       ..+.|++ ++..++..  ..++.+.+|+...       .
T Consensus        87 ~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~-------~  158 (373)
T d2madh_          87 FSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGG-------S  158 (373)
T ss_pred             CCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEE-CCCCEEEEEECCCCCEEEEECCC-------C
T ss_conf             775321245318999977789388897268851368516897089985-89937999986987467762368-------7


Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEEC------CCCCEEEEEECCCCEEEEEECCC
Q ss_conf             303445327986999981899968999938990999965899834699912------79986799964999899997899
Q 002736          701 VSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIG------HNKTVSYVKFVDATTLVSASTDN  774 (886)
Q Consensus       701 ~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~------h~~~V~~i~f~~~~~l~sgs~Dg  774 (886)
                      ...   .+.....++.++|++...+++.+.|+.+.+|+...... ......      .......+.+.....++..+.++
T Consensus       159 ~~~---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (373)
T d2madh_         159 SDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA-GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG  234 (373)
T ss_pred             EEE---EEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-EEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCC
T ss_conf             289---98245206999628991999994799399997477426-67886300366753043458878994299925896


Q ss_pred             CEEEEECCCCCCCCCCCCCEEEECC----------CCCEEEEEEECCCC----------EEEEECCCCCEEEEECCCCCC
Q ss_conf             4999947999766569881386067----------88534999913999----------999984999299971399986
Q 002736          775 TLKLWDLSMCTSRVIDTPLHSFTGH----------TNVKNFVGLSVWDG----------YVATGSETNEVFVYHKAFPMP  834 (886)
Q Consensus       775 ~I~iwd~~~~~~~~~~~~~~~~~~h----------~~~v~~v~~sp~~~----------~lasgs~dg~i~iwd~~~~~~  834 (886)
                      .+.+|+.......    .......+          ......+.+++++.          .++....++.+.+||...++.
T Consensus       235 ~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~  310 (373)
T d2madh_         235 KILQADISAAGAT----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             EEEEEECCCCEEE----EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCE
T ss_conf             5999976899078----977630564757866413674133577149975999548882478625898699998999969


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCE-EEEEECCCCEEEEEE
Q ss_conf             101035799999988556679959999990699959-999847997999970
Q 002736          835 ALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNT-LVAANSSGNIKILEM  885 (886)
Q Consensus       835 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~-lvs~~~dg~I~iw~l  885 (886)
                      +..+..              ...+.+++|+||++.. +++++.|+.|++|++
T Consensus       311 ~~~~~~--------------~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         311 SSQISL--------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EEEECC--------------CCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
T ss_conf             898668--------------99825899998999899999679992999999

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.4e-16  Score=116.94  Aligned_cols=280  Identities=10%  Similarity=0.005  Sum_probs=171.1

Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEE----------ECCCCEEEEECCCCCCCCCCCCC
Q ss_conf             33462478641374488992057335899988999996899989999----------68991999975864475665333
Q 002736          540 FLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAA----------GVNKKIKVFECDAIINENRDIHY  609 (886)
Q Consensus       540 ~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg----------~~dg~I~iwd~~~~~~~~~~~~~  609 (886)
                      ...+.+.+|+..+.+..+++..+     .  +..++|+|||++|++.          +.++.|.+||..+..........
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~~~g-----~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~   97 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMIDGG-----F--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP   97 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEEEEC-----S--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEEECC-----C--CCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC
T ss_conf             77671999999999499999899-----9--9856994899999999677764201589998999999999798898058


Q ss_pred             CEEEECCCCCEEEEEEECCCCCEEEEE--CCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf             348723789801699807999869996--289919999878862788812358749999981399998999818994999
Q 002736          610 PVVEMASRSKLSSICWNSYIKSQIASS--NFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL  687 (886)
Q Consensus       610 ~~~~~~~~~~I~~i~~~~~~~~~l~s~--s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~i  687 (886)
                      .............+.|++ ++..++.+  +.+..+.+|+..+++.+..+..+.....   +. ......++.+.|+...+
T Consensus        98 ~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~dg~~~~  172 (355)
T d2bbkh_          98 DAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI---FP-TAPDTFFMHCRDGSLAK  172 (355)
T ss_dssp             TCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE---EE-EETTEEEEEETTSCEEE
T ss_pred             CCCEEECCCCCCEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEE---EE-CCCCCEEEECCCCCEEE
T ss_conf             864031179873499933-88715773279882045430578837667705874047---30-69963699938999899


Q ss_pred             EECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCE-EEEECCC----------CCE
Q ss_conf             94750344420473034453279869999818999689999389909999658998346-9991279----------986
Q 002736          688 WSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPL-CTLIGHN----------KTV  756 (886)
Q Consensus       688 wdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~-~~~~~h~----------~~V  756 (886)
                      |.......................+....+.+. +..+++++.++.+++|++....... .....+.          ...
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             EECCSSSCCEEEECCCCSCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             EEECCCCEEEEEECCCCCCEECCEEEECCCCCC-CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCE
T ss_conf             983478737999624333000110610215389-9738874699829999658990799844578441268543303510


Q ss_pred             EEEEEC-CCCEEEEEECC----------CCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC--EEEEECCCCC
Q ss_conf             799964-99989999789----------9499994799976656988138606788534999913999--9999849992
Q 002736          757 SYVKFV-DATTLVSASTD----------NTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETNE  823 (886)
Q Consensus       757 ~~i~f~-~~~~l~sgs~D----------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~lasgs~dg~  823 (886)
                      ..+.++ ++..++..+.+          ..|.+||..+.+      .+..+. +...+.+++|+|+++  ++++++.|+.
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~------~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~  324 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE------RLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT  324 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------EEEEEE-EEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             EEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCC------EEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCE
T ss_conf             8999807997678874068712651799759998678884------989966-899877999928999699999789998


Q ss_pred             EEEEECCCCCCCEEEC
Q ss_conf             9997139998610103
Q 002736          824 VFVYHKAFPMPALSFN  839 (886)
Q Consensus       824 i~iwd~~~~~~~~~~~  839 (886)
                      |++||..+++.+.++.
T Consensus       325 i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         325 LYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCCEEEEEE
T ss_conf             9999999998999992

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=5.5e-17  Score=119.51  Aligned_cols=277  Identities=11%  Similarity=0.007  Sum_probs=171.6

Q ss_pred             CEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEE--------
Q ss_conf             889999968999899996-----8991999975864475665333348723789801699807999869996--------
Q 002736          570 LVCSLSFDRDGELFAAAG-----VNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASS--------  636 (886)
Q Consensus       570 ~V~si~fs~dg~~latg~-----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~--------  636 (886)
                      ++...+.+||++.++...     .+..|.+||..+..        .+... ..+....++|+| ++++|+++        
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--------~~~~~-~~g~~~~~a~Sp-Dg~~l~v~~~~~~~~~   72 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--------VIGMI-DGGFLPNPVVAD-DGSFIAHASTVFSRIA   72 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--------EEEEE-EECSSCEEEECT-TSSCEEEEEEEEEETT
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCC--------EEEEE-ECCCCCCEEECC-CCCEEEEEECCCCCCC
T ss_conf             7174765899999999826647776719999999994--------99999-899998569948-9999999967776420


Q ss_pred             --CCCCCEEEEECCCCEEEEEECCCC-------CCEEEEEECCCCCCEEEEEE--CCCCEEEEECCHHHHHHCCCCEEEE
Q ss_conf             --289919999878862788812358-------74999998139999899981--8994999947503444204730344
Q 002736          637 --NFEGVVQVWDVSRSQVLTEMREHE-------RRVWSIDFSSADPTLLASGS--DDGSVKLWSINQAILLLHLGVSIGT  705 (886)
Q Consensus       637 --s~Dg~V~iWd~~~~~~~~~~~~h~-------~~V~~i~~sp~~~~~l~sgs--~Dg~v~iwdl~~~~~~~~~~~~~~~  705 (886)
                        +.|+.|.+||..+++.+..+..+.       .....+.|+| ++..++.++  .+..+.+|+..+       +..+..
T Consensus        73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~-------~~~~~~  144 (355)
T d2bbkh_          73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEG-------KAFKRM  144 (355)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTT-------TEEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEEC-CCCEEEEECCCCCCEEEEEECCC-------CCEEEE
T ss_conf             1589998999999999798898058864031179873499933-88715773279882045430578-------837667


Q ss_pred             EECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEE-----ECCCCCEEEEEEC-CCCEEEEEECCCCEEEE
Q ss_conf             53279869999818999689999389909999658998346999-----1279986799964-99989999789949999
Q 002736          706 IKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL-----IGHNKTVSYVKFV-DATTLVSASTDNTLKLW  779 (886)
Q Consensus       706 ~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~-----~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iw  779 (886)
                      +...........  . ....+..+.|+...++............     ..+...+....+. ++..++.++.++.+.+|
T Consensus       145 ~~~~~~~~~~~~--~-~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  221 (355)
T d2bbkh_         145 LDVPDCYHIFPT--A-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI  221 (355)
T ss_dssp             EECCSEEEEEEE--E-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred             EECCCCCEEEEC--C-CCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEE
T ss_conf             705874047306--9-9636999389998999834787379996243330001106102153899738874699829999


Q ss_pred             ECCCCCCCCCCCCCEEEECC----------CCCEEEEEEECCCCEEEEECCC----------CCEEEEECCCCCCCEEEC
Q ss_conf             47999766569881386067----------8853499991399999998499----------929997139998610103
Q 002736          780 DLSMCTSRVIDTPLHSFTGH----------TNVKNFVGLSVWDGYVATGSET----------NEVFVYHKAFPMPALSFN  839 (886)
Q Consensus       780 d~~~~~~~~~~~~~~~~~~h----------~~~v~~v~~sp~~~~lasgs~d----------g~i~iwd~~~~~~~~~~~  839 (886)
                      ++.......    +....++          ......+++++++..++..+.+          +.|.+||..+++.+..+.
T Consensus       222 ~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~  297 (355)
T d2bbkh_         222 DLSSGDAKF----LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  297 (355)
T ss_dssp             ECTTSSCEE----CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEEE----EECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEEC
T ss_conf             658990799----8445784412685433035108999807997678874068712651799759998678884989966


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCCCE-EEEEECCCCEEEEEE
Q ss_conf             5799999988556679959999990699959-999847997999970
Q 002736          840 FNHADPLSGPETDDAAQFISSVCWRGQSSNT-LVAANSSGNIKILEM  885 (886)
Q Consensus       840 ~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~-lvs~~~dg~I~iw~l  885 (886)
                      .              ...+.+++|+||+... +++++.|+.|.+|+.
T Consensus       298 ~--------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         298 M--------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             E--------------EEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             C--------------CCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
T ss_conf             8--------------99877999928999699999789998999999

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.71  E-value=7.4e-14  Score=99.70  Aligned_cols=315  Identities=10%  Similarity=0.010  Sum_probs=175.2

Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCCCCCCCCCCE
Q ss_conf             346247864137448899205733589998899999689998999968---------99199997586447566533334
Q 002736          541 LEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGV---------NKKIKVFECDAIINENRDIHYPV  611 (886)
Q Consensus       541 ~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~---------dg~I~iwd~~~~~~~~~~~~~~~  611 (886)
                      .++.+.+|+..+.+....+....+..|...|.++.|+|||++|+.+..         ++.+.+|++.+....        
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~--------  105 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--------  105 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--------
T ss_pred             CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCC--------
T ss_conf             599499998899978999701564431676540599898897999977710001046734999989888513--------


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECC------------------CCCCEEEEEECCCCC
Q ss_conf             87237898016998079998699962899199998788627888123------------------587499999813999
Q 002736          612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE------------------HERRVWSIDFSSADP  673 (886)
Q Consensus       612 ~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~------------------h~~~V~~i~~sp~~~  673 (886)
                      ....+...+..+.|+| ++..+|... ++.+.+|+..+++.......                  ..+....+.|+| ++
T Consensus       106 ~l~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DG  182 (470)
T d2bgra1         106 TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NG  182 (470)
T ss_dssp             CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TS
T ss_pred             CCCCCCCCCCCCCCCC-CCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECC-CC
T ss_conf             1246874231010146-764135751-46413798899946532101477740535432011210047765307999-98


Q ss_pred             CEEEEEECCCC-EEEEECCHHHHHHC------------CCC-----EEEEEE-----------------------CCCCE
Q ss_conf             98999818994-99994750344420------------473-----034453-----------------------27986
Q 002736          674 TLLASGSDDGS-VKLWSINQAILLLH------------LGV-----SIGTIK-----------------------TKANV  712 (886)
Q Consensus       674 ~~l~sgs~Dg~-v~iwdl~~~~~~~~------------~~~-----~~~~~~-----------------------~~~~v  712 (886)
                      +.|+....|.+ |..|.+........            .+.     .+....                       ....+
T Consensus       183 k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (470)
T d2bgra1         183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL  262 (470)
T ss_dssp             SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred             CCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEE
T ss_conf             72202686377670699876604777887135403665454688625799998886145520332247863347898667


Q ss_pred             EEEEEECCCCCEEEEEE-CCC---EEEE--EECCCCCCCEEE------EE-------CCCCCEEEEEEC-CCCEEEEEEC
Q ss_conf             99998189996899993-899---0999--965899834699------91-------279986799964-9998999978
Q 002736          713 CCVQFPLDSGRSLAFGS-ADH---RIYY--YDLRNSKIPLCT------LI-------GHNKTVSYVKFV-DATTLVSAST  772 (886)
Q Consensus       713 ~~i~~sp~~~~~l~~gs-~dg---~I~i--wDl~~~~~~~~~------~~-------~h~~~V~~i~f~-~~~~l~sgs~  772 (886)
                      ..+.|.++ +.+++... ...   .+.+  +|..++.. ...      ..       .+........+. ++..++.+..
T Consensus       263 ~~~~w~~~-~~~~~~~~~r~~~~~~~~~~~~d~~tg~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~  340 (470)
T d2bgra1         263 CDVTWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRW-NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE  340 (470)
T ss_dssp             EEEEEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEE-EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred             EEEEECCC-CCEEEEEEECCCCCEEEEEEEECCCCCCE-EEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECC
T ss_conf             78887687-83347873046881599999961888947-89998751466214335313577724542378847987436


Q ss_pred             CCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEE-EEECCCC----CEEEEEC--CCCCCCEEECCCCCCC
Q ss_conf             9949999479997665698813860678853499991399999-9984999----2999713--9998610103579999
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV-ATGSETN----EVFVYHK--AFPMPALSFNFNHADP  845 (886)
Q Consensus       773 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-asgs~dg----~i~iwd~--~~~~~~~~~~~~~~~~  845 (886)
                      ||...||.+....     .....+..+...|..+ ++++++.+ ++++.++    .-.||.+  ..+.....+.      
T Consensus       341 dg~~~ly~~~~~g-----~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt------  408 (470)
T d2bgra1         341 EGYRHICYFQIDK-----KDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS------  408 (470)
T ss_dssp             TSCEEEEEEETTC-----SCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESS------
T ss_pred             CCCCEEEEEECCC-----CCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEC------
T ss_conf             7576459995268-----7304511698048787-897799999999568998351799999888998605703------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCCEEE-EEECCC--CEEEEE
Q ss_conf             998855667995999999069995999-984799--799997
Q 002736          846 LSGPETDDAAQFISSVCWRGQSSNTLV-AANSSG--NIKILE  884 (886)
Q Consensus       846 ~~~~~~~~~~~~V~~v~~~~~~~~~lv-s~~~dg--~I~iw~  884 (886)
                         .....|...+..++|+|++. +++ +++..+  .+.+|+
T Consensus       409 ---~~~~~~~~~~~s~~fSpdgk-y~~~~~s~~~~P~~~l~~  446 (470)
T d2bgra1         409 ---CELNPERCQYYSVSFSKEAK-YYQLRCSGPGLPLYTLHS  446 (470)
T ss_dssp             ---TTTSTTTBCBEEEEECTTSS-EEEEEECSBSSCEEEEEE
T ss_pred             ---CCCCCCCCCEEEEEECCCCC-EEEEEECCCCCCEEEEEE
T ss_conf             ---54358889879999998999-999983289998199999

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=1.7e-14  Score=103.79  Aligned_cols=281  Identities=9%  Similarity=-0.050  Sum_probs=165.0

Q ss_pred             CCCCCC--EEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCCCCCC
Q ss_conf             533462--4786413744889920573358999889999968999899996----------8991999975864475665
Q 002736          539 PFLEGL--CKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAG----------VNKKIKVFECDAIINENRD  606 (886)
Q Consensus       539 ~~~dg~--~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~----------~dg~I~iwd~~~~~~~~~~  606 (886)
                      ...++.  +.+++..+.+....+..+     ...  .+.|+|||+.+++.+          .|+.|.+||..+.......
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~-----~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i  112 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGA-----FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEEC-----TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEECC-----CCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf             45788621799708998377888578-----777--51398999889997556764010356786999989999383064


Q ss_pred             CCCCEEEECCCCCEEEEEEECCCCCEEEEEC-CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCE
Q ss_conf             3333487237898016998079998699962-899199998788627888123587499999813999989998189949
Q 002736          607 IHYPVVEMASRSKLSSICWNSYIKSQIASSN-FEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSV  685 (886)
Q Consensus       607 ~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s-~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v  685 (886)
                      ................+.|+| ++.+++.+. .++.+.+||+.+++.+..+..+.....    .|.....+++.+.||.+
T Consensus       113 ~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~  187 (368)
T d1mdah_         113 ELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSC
T ss_pred             CCCCCCEECCCCCCCCEEECC-CCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEE----CCCCCCEEEEECCCCCE
T ss_conf             378542102468864058878-9989999968998599998998938678604675237----46998239999489988


Q ss_pred             EEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEE-EECCC----------C
Q ss_conf             999475034442047303445327986999981899968999938990999965899834699-91279----------9
Q 002736          686 KLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT-LIGHN----------K  754 (886)
Q Consensus       686 ~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~-~~~h~----------~  754 (886)
                      .+|++.....................+..+.+.++ +..+.  ...+.++++++......... ...+.          .
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T d1mdah_         188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP-GMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT-TEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             EEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCC-CEEEE--ECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCC
T ss_conf             99982689626665303111356664660101558-68999--3489779996069936997602465430455401278


Q ss_pred             CEEEEEEC-CCCEEEEEEC-C--------CCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC--EEEEECCCC
Q ss_conf             86799964-9998999978-9--------9499994799976656988138606788534999913999--999984999
Q 002736          755 TVSYVKFV-DATTLVSAST-D--------NTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETN  822 (886)
Q Consensus       755 ~V~~i~f~-~~~~l~sgs~-D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~lasgs~dg  822 (886)
                      ....+.++ ++..++.... +        ..|.+||..+++      .+..+. +...+..++|+|+++  ++++++.|+
T Consensus       265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~------~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~  337 (368)
T d1mdah_         265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ------TSGPIS-NGHDSDAIIAAQDGASDNYANSAGTE  337 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC------EEECCE-EEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             CCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCC------EEEEEC-CCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf             83568871799879998358973340588649999899994------868955-89965179999899989999948999


Q ss_pred             CEEEEECCCCCCCEEECCC
Q ss_conf             2999713999861010357
Q 002736          823 EVFVYHKAFPMPALSFNFN  841 (886)
Q Consensus       823 ~i~iwd~~~~~~~~~~~~~  841 (886)
                      .|++||..+++.+.++..+
T Consensus       338 ~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         338 VLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEESSSCEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECC
T ss_conf             6999989999799998799

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=2e-13  Score=96.92  Aligned_cols=282  Identities=9%  Similarity=-0.040  Sum_probs=155.5

Q ss_pred             CCCCEEEEEECCCCCEE---EEEECCCC--EEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEC----
Q ss_conf             99988999996899989---99968991--9999758644756653333487237898016998079998699962----
Q 002736          567 SSNLVCSLSFDRDGELF---AAAGVNKK--IKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSN----  637 (886)
Q Consensus       567 h~~~V~si~fs~dg~~l---atg~~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s----  637 (886)
                      +.++...+...+|++..   ++...++.  +.+||..+..        .... ........+.|+| ++..|++++    
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~--------~~~~-~~~~~~~~~a~sp-Dg~~i~~~~~~~~   87 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV--------TLGH-SLGAFLSLAVAGH-SGSDFALASTSFA   87 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE--------EEEE-EEECTTCEEEECT-TSSCEEEEEEEET
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCC--------EEEE-EECCCCCCCEECC-CCCEEEEECCCCC
T ss_conf             6798666455898761269720457886217997089983--------7788-8578777513989-9988999755676


Q ss_pred             ------CCCCEEEEECCCCEEEEEECCCC-------CCEEEEEECCCCCCEEEEEE-CCCCEEEEECCHHHHHHCCCCEE
Q ss_conf             ------89919999878862788812358-------74999998139999899981-89949999475034442047303
Q 002736          638 ------FEGVVQVWDVSRSQVLTEMREHE-------RRVWSIDFSSADPTLLASGS-DDGSVKLWSINQAILLLHLGVSI  703 (886)
Q Consensus       638 ------~Dg~V~iWd~~~~~~~~~~~~h~-------~~V~~i~~sp~~~~~l~sgs-~Dg~v~iwdl~~~~~~~~~~~~~  703 (886)
                            .|+.|.+||..+++.+..+..+.       .....+.|+| |+++++.+. .++.+.+||+.+       .+..
T Consensus        88 ~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~-------~~~~  159 (368)
T d1mdah_          88 RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPG-------ASDD  159 (368)
T ss_dssp             TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETT-------TEEE
T ss_pred             CCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECC-CCCEEEEEECCCCEEEEEECCC-------CCEE
T ss_conf             4010356786999989999383064378542102468864058878-9989999968998599998998-------9386


Q ss_pred             EEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEE-----EECCCCCEEEEEEC-CCCEEEEEECCCCEE
Q ss_conf             445327986999981899968999938990999965899834699-----91279986799964-999899997899499
Q 002736          704 GTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT-----LIGHNKTVSYVKFV-DATTLVSASTDNTLK  777 (886)
Q Consensus       704 ~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~-----~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~  777 (886)
                      ..+......   .+.|.....++..+.|+.+.++++.........     +..+...+..+.+. ++..+.+  ..+.+.
T Consensus       160 ~~~~~~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~  234 (368)
T d1mdah_         160 QLTKSASCF---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSIL  234 (368)
T ss_dssp             EEEECSSCC---CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCE
T ss_pred             EEEECCCCC---EECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEE--CCCCEE
T ss_conf             786046752---374699823999948998899982689626665303111356664660101558689993--489779


Q ss_pred             EEECCCCCCCCCCC----CCEEEE--CCCCCEEEEEEECCCCEEEEECC---------CCCEEEEECCCCCCCEEECCCC
Q ss_conf             99479997665698----813860--67885349999139999999849---------9929997139998610103579
Q 002736          778 LWDLSMCTSRVIDT----PLHSFT--GHTNVKNFVGLSVWDGYVATGSE---------TNEVFVYHKAFPMPALSFNFNH  842 (886)
Q Consensus       778 iwd~~~~~~~~~~~----~~~~~~--~h~~~v~~v~~sp~~~~lasgs~---------dg~i~iwd~~~~~~~~~~~~~~  842 (886)
                      ++++..........    ......  ........+++++++..++....         ...|.+||..+++++..+..  
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~--  312 (368)
T d1mdah_         235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--  312 (368)
T ss_dssp             EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--
T ss_pred             EEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC--
T ss_conf             996069936997602465430455401278835688717998799983589733405886499998999948689558--


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCE-EEEEECCCCEEEEEE
Q ss_conf             9999988556679959999990699959-999847997999970
Q 002736          843 ADPLSGPETDDAAQFISSVCWRGQSSNT-LVAANSSGNIKILEM  885 (886)
Q Consensus       843 ~~~~~~~~~~~~~~~V~~v~~~~~~~~~-lvs~~~dg~I~iw~l  885 (886)
                                  ...+.+++|+||+... ++++..|+.|++|+.
T Consensus       313 ------------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         313 ------------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             ------------EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             ------------CCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
T ss_conf             ------------99651799998999899999489996999989

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.53  E-value=2.9e-13  Score=95.99  Aligned_cols=264  Identities=7%  Similarity=-0.012  Sum_probs=147.7

Q ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCC--EEEEEECCCC-----------------EEEE
Q ss_conf             10045334624786413744889920573358999889999968999--8999968991-----------------9999
Q 002736          535 GWINPFLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGE--LFAAAGVNKK-----------------IKVF  595 (886)
Q Consensus       535 ~~~~~~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~--~latg~~dg~-----------------I~iw  595 (886)
                      -|++...++.+.+++..++++...+.    ..+...+..++|+|||+  |++..+.+.-                 +..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~----iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITH----IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE----CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCCCEEEEEE----CCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             99973899979999887784755795----67887864348705699899995667754436766300145553238866


Q ss_pred             ECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCC-CEEEEECCCCEEEEEECCCCCCEEEEEECCCCCC
Q ss_conf             758644756653333487237898016998079998699962899-1999987886278881235874999998139999
Q 002736          596 ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEG-VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPT  674 (886)
Q Consensus       596 d~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg-~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~  674 (886)
                      |..+.        ..............+.|+| ++.++++++++. .+..++..+......+... .....+.+.| +++
T Consensus       162 D~~t~--------~v~~qI~v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~-dGk  230 (441)
T d1qnia2         162 DAETM--------DVAWQVIVDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVK-AGN  230 (441)
T ss_dssp             ETTTC--------SEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHH-TTC
T ss_pred             CCCCC--------EEEEEEECCCCCCCEEECC-CCCEEEEEECCCCCEEEEECCCCCEEEEEEEC-CCCCEEEEEC-CCC
T ss_conf             37556--------0647873699865469879-99989998517873189851571217899968-8511079966-999


Q ss_pred             EEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCE-EEEEECCCEEEEEECCCCCC---------
Q ss_conf             89998189949999475034442047303445327986999981899968-99993899099996589983---------
Q 002736          675 LLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS-LAFGSADHRIYYYDLRNSKI---------  744 (886)
Q Consensus       675 ~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~-l~~gs~dg~I~iwDl~~~~~---------  744 (886)
                      ++.. +.++.+.+++...       ...+..+........+.++|+ |++ +++|..+++|.+||+.+...         
T Consensus       231 ~~~v-~~~~v~vvd~~~~-------~~v~~~IPvgksPhGv~vSPD-Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         231 FKTI-GDSKVPVVDGRGE-------SEFTRYIPVPKNPHGLNTSPD-GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             CBCC-TTCCCCEEECSSS-------CSSEEEECCBSSCCCEEECTT-SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             EEEE-CCCCCEEEECCCC-------CCEEEEEECCCCCCCCEECCC-CCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCC
T ss_conf             9996-9998289980368-------706899717988667268999-878999077599389998322445752568842


Q ss_pred             -CEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCC----CCCCCCCCEE-----EECCCCCEEEEEEECCCC
Q ss_conf             -469991279986799964-99989999789949999479997----6656988138-----606788534999913999
Q 002736          745 -PLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCT----SRVIDTPLHS-----FTGHTNVKNFVGLSVWDG  813 (886)
Q Consensus       745 -~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~-----~~~h~~~v~~v~~sp~~~  813 (886)
                       .+.-.....-......|. ++..+.|...|..|..|++....    .......+..     ..||...+.+..++|+|+
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             EEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             47996014554766522657855998524431689723542213322677765686453266898775245422389884


Q ss_pred             EEEEE---CCCC
Q ss_conf             99998---4999
Q 002736          814 YVATG---SETN  822 (886)
Q Consensus       814 ~lasg---s~dg  822 (886)
                      ||+++   |.|.
T Consensus       382 ~l~s~~k~s~dr  393 (441)
T d1qnia2         382 WLVVLSKFSKDR  393 (441)
T ss_dssp             EEEEEESCCGGG
T ss_pred             EEEECCCCCCCC
T ss_conf             899657444255

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=2.4e-12  Score=90.11  Aligned_cols=289  Identities=9%  Similarity=-0.006  Sum_probs=148.3

Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCC--CCCCEEE----
Q ss_conf             3346247864137448899205733589998899999689998999968991999975864475665--3333487----
Q 002736          540 FLEGLCKYLSFSKLRVKADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRD--IHYPVVE----  613 (886)
Q Consensus       540 ~~dg~~~~~~~~~~~~~~~l~~~~l~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~--~~~~~~~----  613 (886)
                      ...+.+.+|+..+.+..      .+..+.+.+..+.|+|||+.+|.. .++.+.+|+..+.......  .......    
T Consensus        89 s~~~~~~l~d~~~~~~~------~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~  161 (470)
T d2bgra1          89 SYTASYDIYDLNKRQLI------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (470)
T ss_dssp             CEEEEEEEEETTTTEEC------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             CCCCEEEEEECCCCCCC------CCCCCCCCCCCCCCCCCCCEEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCC
T ss_conf             46734999989888513------124687423101014676413575-14641379889994653210147774053543


Q ss_pred             -----ECCCCCEEEEEEECCCCCEEEEECCCCC-EEEEECC-----------------------------------CCEE
Q ss_conf             -----2378980169980799986999628991-9999878-----------------------------------8627
Q 002736          614 -----MASRSKLSSICWNSYIKSQIASSNFEGV-VQVWDVS-----------------------------------RSQV  652 (886)
Q Consensus       614 -----~~~~~~I~~i~~~~~~~~~l~s~s~Dg~-V~iWd~~-----------------------------------~~~~  652 (886)
                           ....+....+.|+| ++..|+....|.+ |..|.+.                                   .+..
T Consensus       162 d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~  240 (470)
T d2bgra1         162 DWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS  240 (470)
T ss_dssp             CHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCS
T ss_pred             CEEEEEEECCCCCCCEECC-CCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCE
T ss_conf             2011210047765307999-987220268637767069987660477788713540366545468862579999888614


Q ss_pred             EEEE-----------CCCCCCEEEEEECCCCCCEEEEE-ECCC---CEEEEECC--HHHHHHCCCCEEEEEECCC-----
Q ss_conf             8881-----------23587499999813999989998-1899---49999475--0344420473034453279-----
Q 002736          653 LTEM-----------REHERRVWSIDFSSADPTLLASG-SDDG---SVKLWSIN--QAILLLHLGVSIGTIKTKA-----  710 (886)
Q Consensus       653 ~~~~-----------~~h~~~V~~i~~sp~~~~~l~sg-s~Dg---~v~iwdl~--~~~~~~~~~~~~~~~~~~~-----  710 (886)
                      ....           ......+..+.|.+ ++..++.. ...+   .+.++++.  ++.................     
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~  319 (470)
T d2bgra1         241 VTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF  319 (470)
T ss_dssp             SSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred             EEECCCCCCCCCCCCCCCCCEEEEEEECC-CCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECC
T ss_conf             55203322478633478986677888768-78334787304688159999996188894789998751466214335313


Q ss_pred             CEEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCE-EEEEECCC----CEEEEECC--
Q ss_conf             86999981899-968999938990999965899834699912799867999649998-99997899----49999479--
Q 002736          711 NVCCVQFPLDS-GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATT-LVSASTDN----TLKLWDLS--  782 (886)
Q Consensus       711 ~v~~i~~sp~~-~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~-l~sgs~Dg----~I~iwd~~--  782 (886)
                      ......+.++. +.++.....|+..++|...........+..+...|..+...+++. +++++.++    .-.||.+.  
T Consensus       320 ~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~  399 (470)
T d2bgra1         320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLS  399 (470)
T ss_dssp             SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred             CCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCEEEEEEEECC
T ss_conf             57772454237884798743675764599952687304511698048787897799999999568998351799999888


Q ss_pred             CCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEE---EECCCCCEEEEECCCCCCCEEEC
Q ss_conf             9976656988138606788534999913999999---98499929997139998610103
Q 002736          783 MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVA---TGSETNEVFVYHKAFPMPALSFN  839 (886)
Q Consensus       783 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la---sgs~dg~i~iwd~~~~~~~~~~~  839 (886)
                      ......  ..-..+.+|...++.+.|||+++|++   +|...-.+.+|+...++.+..+.
T Consensus       400 g~~~~~--~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         400 DYTKVT--CLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             CTTCEE--ESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCEE--EECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf             998605--7035435888987999999899999998328999819999989998999980

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.40  E-value=4e-14  Score=101.37  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             EEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCCC
Q ss_conf             2999851-7852344504999986868999999999999995101470422568760453248853453077667999
Q 002736           57 FVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG  133 (886)
Q Consensus        57 ~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs~giiHrDlkP~Nill~~~~~vk~~dfg~~~~~~  133 (886)
                      .+++||+ .+..+.+        ++......++.|++.+|.|+|++||+||||||+|||++. +.+++||||.+...+
T Consensus        85 ~~lvme~~~~~~~~~--------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~-~~~~liDFG~a~~~~  153 (191)
T d1zara2          85 NAVLMELIDAKELYR--------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSE-EGIWIIDFPQSVEVG  153 (191)
T ss_dssp             TEEEEECCCCEEGGG--------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEET-TEEEECCCTTCEETT
T ss_pred             CEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEEEC-CCEEEEECCCCCCCC
T ss_conf             889999504565420--------015789999999999999982688898368903611428-989998778843089

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.40  E-value=3.8e-12  Score=88.87  Aligned_cols=285  Identities=8%  Similarity=-0.055  Sum_probs=165.7

Q ss_pred             CCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCE-EEEECCCCC-----
Q ss_conf             988999996899989999-6899199997586447566533334872378980169980799986-999628991-----
Q 002736          569 NLVCSLSFDRDGELFAAA-GVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ-IASSNFEGV-----  641 (886)
Q Consensus       569 ~~V~si~fs~dg~~latg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~-l~s~s~Dg~-----  641 (886)
                      -.+....++|||+++++. ..+.+|.++|+.+..      ...+........+..++|+| +++. .+++..+..     
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k------~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~  144 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMK------TDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPN  144 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE------EEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSC
T ss_pred             CCCCEECCCCCCCEEEEECCCCCEEEEEECCCCC------EEEEEECCCCCCCCCEEEEC-CCCEEEEEECCCCCCCCCC
T ss_conf             7722103268888899973899979999887784------75579567887864348705-6998999956677544367


Q ss_pred             -------------EEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCC-CEEEEECCHHHHHHCCCCEEEEEE
Q ss_conf             -------------999987886278881235874999998139999899981899-499994750344420473034453
Q 002736          642 -------------VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG-SVKLWSINQAILLLHLGVSIGTIK  707 (886)
Q Consensus       642 -------------V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg-~v~iwdl~~~~~~~~~~~~~~~~~  707 (886)
                                   +..+|..+.+....+.. ......+.|+| ++.++++.+.+. .+..++..+       ......+.
T Consensus       145 dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t-------~~~~d~i~  215 (441)
T d1qnia2         145 DGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADY-TGKYATSTCYNSERAVDLAGTM-------RNDRDWVV  215 (441)
T ss_dssp             SSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHT-------CSSBCEEE
T ss_pred             CCCCCCCCCCCCEEEEECCCCCEEEEEEEC-CCCCCCEEECC-CCCEEEEEECCCCCEEEEECCC-------CCEEEEEE
T ss_conf             663001455532388663755606478736-99865469879-9998999851787318985157-------12178999


Q ss_pred             CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEE-EEECCCCEEEEECCCCC
Q ss_conf             2798699998189996899993899099996589983469991279986799964-999899-99789949999479997
Q 002736          708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLV-SASTDNTLKLWDLSMCT  785 (886)
Q Consensus       708 ~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~-sgs~Dg~I~iwd~~~~~  785 (886)
                      .......+.+.|+ ++++..+ .++.+.+++....+ .+..+..... ...+.++ +|++++ ++..++++.+||+.+..
T Consensus       216 v~n~p~~~~~~~d-Gk~~~v~-~~~v~vvd~~~~~~-v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         216 VFNVERIAAAVKA-GNFKTIG-DSKVPVVDGRGESE-FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             EEEHHHHHHHHHT-TCCBCCT-TCCCCEEECSSSCS-SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred             ECCCCCEEEEECC-CCEEEEC-CCCCEEEECCCCCC-EEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHH
T ss_conf             6885110799669-9999969-99828998036870-6899717988-66726899987899907759938999832244


Q ss_pred             CCCC--CCCCEEEECCC---CCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCC----CCCCCCCCCC
Q ss_conf             6656--98813860678---8534999913999999984999299971399986101035799999----9885566799
Q 002736          786 SRVI--DTPLHSFTGHT---NVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPL----SGPETDDAAQ  856 (886)
Q Consensus       786 ~~~~--~~~~~~~~~h~---~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  856 (886)
                      ....  ..+..++.++.   -......|++++..+.+...|..|..|++...  +..+......++    ..+-..+|..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~--~~~~~~~~~~~v~~~~~v~y~~GH~~  369 (441)
T d1qnia2         292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADA--IKHYNGDRVNYIRQKLDVQYQPGHNH  369 (441)
T ss_dssp             HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH--HHHHTTCCCCCEEEEEECSSCEEEEE
T ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHH--HHHHCCCCCCEEEECCCCCCCCCCCC
T ss_conf             5752568842479960145547665226578559985244316897235422--13322677765686453266898775


Q ss_pred             CEEEEEECCCCCCEEEEEEC
Q ss_conf             59999990699959999847
Q 002736          857 FISSVCWRGQSSNTLVAANS  876 (886)
Q Consensus       857 ~V~~v~~~~~~~~~lvs~~~  876 (886)
                      .+.+.+++|+|. +|++++.
T Consensus       370 ~~~~~t~~pdGk-~l~s~~k  388 (441)
T d1qnia2         370 ASLTESRDADGK-WLVVLSK  388 (441)
T ss_dssp             ETTTTSTTCCCC-EEEEEES
T ss_pred             CCCCCCCCCCCC-EEEECCC
T ss_conf             245422389884-8996574

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.38  E-value=7.8e-09  Score=67.91  Aligned_cols=231  Identities=12%  Similarity=0.026  Sum_probs=115.1

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCC
Q ss_conf             88999996899989999689919999758644756653333487237898016998079998699962899199998788
Q 002736          570 LVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSR  649 (886)
Q Consensus       570 ~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~  649 (886)
                      .+..++++|||+++++...+++|..|+.+...         .........+.+++|.+ +++++++...++.+..|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~---------~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---------QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE---------EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEEC
T ss_pred             CCCCEEECCCCCEEEEECCCCEEEEEECCCCE---------EEEECCCCCCCEEEECC-CCCEEEEECCCCEEEEEEECC
T ss_conf             84787799998899996889989999089988---------99971799853689867-788699832895378887101


Q ss_pred             CE-EEEEE--CCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCC-C---CEEEEEECCCCEEEEEEECCCC
Q ss_conf             62-78881--2358749999981399998999818994999947503444204-7---3034453279869999818999
Q 002736          650 SQ-VLTEM--REHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL-G---VSIGTIKTKANVCCVQFPLDSG  722 (886)
Q Consensus       650 ~~-~~~~~--~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~-~---~~~~~~~~~~~v~~i~~sp~~~  722 (886)
                      .. ....+  .......+.+.+.+ ++.++++.+.++.+..++.......... .   ...........+..+.+..  .
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~  175 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--N  175 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--T
T ss_pred             CCCCEEECCCCCCCCCCCEEEECC-CCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC--C
T ss_conf             111012102357863221667715-7978750356554102421687303675188640143157632243201169--8


Q ss_pred             CEEEEEECCCEEEEEECCCCCCCE-EEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCC
Q ss_conf             689999389909999658998346-9991279986799964-99989999789949999479997665698813860678
Q 002736          723 RSLAFGSADHRIYYYDLRNSKIPL-CTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHT  800 (886)
Q Consensus       723 ~~l~~gs~dg~I~iwDl~~~~~~~-~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~  800 (886)
                      .++++.+..+.|+.++........ ............+++. ++.++++...++.|..++.....     ..+......-
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~-----~~~~~~~~~~  250 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST-----TIIAQAEQGV  250 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE-----EEEECGGGTC
T ss_pred             CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCCCE-----EEEEECCCCC
T ss_conf             30440378876986344333323453101589987523787999999997489918998789978-----9999637898


Q ss_pred             CCEEEEEE---ECCCCEEEEE
Q ss_conf             85349999---1399999998
Q 002736          801 NVKNFVGL---SVWDGYVATG  818 (886)
Q Consensus       801 ~~v~~v~~---sp~~~~lasg  818 (886)
                      ...++++|   +++++.|..+
T Consensus       251 ~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         251 IGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             TTEEEEEECCSTTTTTEEEEE
T ss_pred             CCCEEEEECCCCCCCCEEEEE
T ss_conf             882489970878878989999

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.28  E-value=3e-08  Score=64.22  Aligned_cols=258  Identities=12%  Similarity=0.033  Sum_probs=138.5

Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCE--EEEEC-CCCC
Q ss_conf             58999889999968999899996899199997586447566533334872378980169980799986--99962-8991
Q 002736          565 LNSSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ--IASSN-FEGV  641 (886)
Q Consensus       565 ~~h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~--l~s~s-~Dg~  641 (886)
                      ......++.++|+++++++.++.. +.+..|.+......     ..............+.+++ ++..  ++++. ..+.
T Consensus        36 ~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~-----~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~  108 (365)
T d1jofa_          36 IPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEI-----VHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             CCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEE-----EEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCC
T ss_pred             CCCCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCE-----EEEEEECCCCCCEEEEECC-CCCEEEEEEECCCCCE
T ss_conf             168999777999489899999938-94789999089976-----9876412899867899878-9987999993279978


Q ss_pred             EEEEECCCC-E---------------EEEEE-CCCCCCEEEEEECCCCCCEEEEEEC-CCCEEEEECCHHHHHHCCCCEE
Q ss_conf             999987886-2---------------78881-2358749999981399998999818-9949999475034442047303
Q 002736          642 VQVWDVSRS-Q---------------VLTEM-REHERRVWSIDFSSADPTLLASGSD-DGSVKLWSINQAILLLHLGVSI  703 (886)
Q Consensus       642 V~iWd~~~~-~---------------~~~~~-~~h~~~V~~i~~sp~~~~~l~sgs~-Dg~v~iwdl~~~~~~~~~~~~~  703 (886)
                      |..+.+... .               ..... ......+.++.|+| +++++++++. ...|.+|+......... ....
T Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~-~~~~  186 (365)
T d1jofa_         109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVEL-VGSV  186 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEE-EEEE
T ss_pred             EEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECC-CCCEEEEEECCCCEEEEEECCCCCCEEE-CCCE
T ss_conf             9986745788742068664033004764675568898115978889-9998998207998799997068871665-2511


Q ss_pred             EEEECCCCEEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCCE-EE---EE--------------CCCCCEEEEEEC-C
Q ss_conf             4453279869999818999689-999389909999658998346-99---91--------------279986799964-9
Q 002736          704 GTIKTKANVCCVQFPLDSGRSL-AFGSADHRIYYYDLRNSKIPL-CT---LI--------------GHNKTVSYVKFV-D  763 (886)
Q Consensus       704 ~~~~~~~~v~~i~~sp~~~~~l-~~gs~dg~I~iwDl~~~~~~~-~~---~~--------------~h~~~V~~i~f~-~  763 (886)
                      ...........+.|+|+ ++++ ++...++.|.+|++...+... ..   ..              .+......+.++ +
T Consensus       187 ~~~~~g~gPr~i~f~pd-g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd  265 (365)
T d1jofa_         187 DAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS  265 (365)
T ss_dssp             ECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred             EECCCCCCEEEEEECCC-CCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             11278874089998899-86699951589989999955987537787312402455655666544443577631699899


Q ss_pred             CCEEEEEEC-CC-----CEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEEC-CCCEEEEE-CCCCCEEEEECCCC
Q ss_conf             998999978-99-----499994799976656988138606788534999913-99999998-49992999713999
Q 002736          764 ATTLVSAST-DN-----TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSV-WDGYVATG-SETNEVFVYHKAFP  832 (886)
Q Consensus       764 ~~~l~sgs~-Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~lasg-s~dg~i~iwd~~~~  832 (886)
                      +++++++.. +.     .|..|++.....-.....+..........+.++++| +|++|+++ ..++.|.+|++...
T Consensus       266 G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECC
T ss_conf             99789971357875422799998568871446767667776799864789648999999999679994999998288

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=1.9e-08  Score=65.47  Aligned_cols=237  Identities=8%  Similarity=0.028  Sum_probs=117.3

Q ss_pred             CCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEE
Q ss_conf             99988999996899989999-68991999975864475665333348723789801699807999869996289919999
Q 002736          567 SSNLVCSLSFDRDGELFAAA-GVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVW  645 (886)
Q Consensus       567 h~~~V~si~fs~dg~~latg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iW  645 (886)
                      +.-.-.+++++++|.+.++. +..+.|..++......       .............+++.+ ++.++++....+.++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~   83 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-------TVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLA   83 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE-------EECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEEC
T ss_pred             CCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEE-------EEECCCCCCCCEEEEECC-CCCEEEEEEEECEEEEE
T ss_conf             7698788999699999999718998899993899668-------974369866840899938-99889863100003554


Q ss_pred             ECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEE
Q ss_conf             87886278881235874999998139999899981899499994750344420473034453279869999818999689
Q 002736          646 DVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSL  725 (886)
Q Consensus       646 d~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l  725 (886)
                      +..+...+.... .-...+++++.+ +++++++-.....+..++.....      ..............++++++ ++++
T Consensus        84 ~~~~~~~~~~~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~i~~~~~-g~~~  154 (260)
T d1rwia_          84 AGSNNQTVLPFD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKT------QTVLPFTGLNDPDGVAVDNS-GNVY  154 (260)
T ss_dssp             TTCSCCEECCCC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSS------CEECCCCSCCSCCEEEECTT-CCEE
T ss_pred             EECCCEEEEEEE-EEEECCCCCCCC-CCEEEEECCCCCCCCCCCCCCCE------EEEEEECCCCCCCEEEECCC-CCEE
T ss_conf             211200000010-000000002455-32057503355532112322220------12232036677520545489-9886


Q ss_pred             EEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEE-CCCCCE
Q ss_conf             9993899099996589983469991279986799964-99989999789949999479997665698813860-678853
Q 002736          726 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFT-GHTNVK  803 (886)
Q Consensus       726 ~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~v  803 (886)
                      ++...++.|..+|...... .......-.....+++. ++.++++....+.|..++.....       ...+. ..-...
T Consensus       155 v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-------~~~~~~~~~~~P  226 (260)
T d1rwia_         155 VTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-------STVLPFTGLNTP  226 (260)
T ss_dssp             EEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-------CEECCCCSCCCE
T ss_pred             EECCCCCCCCCCCCCCCEE-EEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCE-------EEEECCCCCCCE
T ss_conf             4102564332223431001-22210114787631231000134321489989999699976-------999706998981


Q ss_pred             EEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             4999913999999984999299971
Q 002736          804 NFVGLSVWDGYVATGSETNEVFVYH  828 (886)
Q Consensus       804 ~~v~~sp~~~~lasgs~dg~i~iwd  828 (886)
                      ..+++++++.++++-..++.|..++
T Consensus       227 ~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         227 LAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             EEEEEECCCCEEEEECCCCEEEEEE
T ss_conf             7999908999999979999899995

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=1.3e-07  Score=60.20  Aligned_cols=246  Identities=9%  Similarity=0.061  Sum_probs=138.2

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEE-CCCCCEEEE
Q ss_conf             9998899999689998999968991999975864475665333348723789801699807999869996-289919999
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASS-NFEGVVQVW  645 (886)
Q Consensus       567 h~~~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~-s~Dg~V~iW  645 (886)
                      .-+....++++++|+++++-..+.+|++|+.+.......  ...............+.+....+..+++. +.++.|..+
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQF--GECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEE--CCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             EECCCCEEEECCCCCEEEEECCCCEEEEEECCCCEEEEE--CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
T ss_conf             288900799949998999979989899996999999981--665788664226630001234455200004775310000


Q ss_pred             ECCCCEEEEEEC-CCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEE---CCCCEEEEEEECCC
Q ss_conf             878862788812-35874999998139999899981899499994750344420473034453---27986999981899
Q 002736          646 DVSRSQVLTEMR-EHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK---TKANVCCVQFPLDS  721 (886)
Q Consensus       646 d~~~~~~~~~~~-~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~---~~~~v~~i~~sp~~  721 (886)
                      +. .+.....+. ........+++.+ ++.++++....+.+.+++..        +..+..+.   .......+++.++ 
T Consensus        99 ~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~--------g~~~~~~g~~~~~~~~~~i~~d~~-  167 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN--------GNVLHKFGCSKHLEFPNGVVVNDK-  167 (279)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT--------SCEEEEEECTTTCSSEEEEEECSS-
T ss_pred             CC-CCCCEEECCCCCCCCCCEECCCC-CCCEEEEEECCCEEEEECCC--------CCEEECCCCCCCCCCCCEEEECCC-
T ss_conf             02-56302403888642542000014-78479996326325676268--------750100220010256624320120-


Q ss_pred             CCEEEEEECCCEEEEEECCCCCCCEEEEE--CCCCCEEEEEEC-CCCEEEEEEC-CCCEEEEECCCCCCCCCCCCCEEEE
Q ss_conf             96899993899099996589983469991--279986799964-9998999978-9949999479997665698813860
Q 002736          722 GRSLAFGSADHRIYYYDLRNSKIPLCTLI--GHNKTVSYVKFV-DATTLVSAST-DNTLKLWDLSMCTSRVIDTPLHSFT  797 (886)
Q Consensus       722 ~~~l~~gs~dg~I~iwDl~~~~~~~~~~~--~h~~~V~~i~f~-~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~  797 (886)
                      ++++++....+.|++||.. ++ .+..+.  +.......|++. +++.+++-+. ++.|.+|+...       +.+.++.
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-------~~~~~~~  238 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-------QLISALE  238 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-------CEEEEEE
T ss_pred             EEEEEEECCCCCEEEEECC-CC-EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC-------CEEEEEE
T ss_conf             0178620135510023047-94-4453011321148762323147869999789980899999999-------9999996


Q ss_pred             CC--CCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCC
Q ss_conf             67--885349999139999999849992999713999861
Q 002736          798 GH--TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA  835 (886)
Q Consensus       798 ~h--~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~  835 (886)
                      ..  ......|++.+++.++++ +.++.|++|......|+
T Consensus       239 ~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         239 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred             CCCCCCCEEEEEEECCCCEEEE-ECCCEEEEEEEEEECCC
T ss_conf             8888898837999089919999-18996999872203578

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=1.3e-07  Score=60.14  Aligned_cols=238  Identities=10%  Similarity=0.011  Sum_probs=149.7

Q ss_pred             CCCCCEEEEEEECCCCCEEEEE-CCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHH
Q ss_conf             3789801699807999869996-289919999878862788812358749999981399998999818994999947503
Q 002736          615 ASRSKLSSICWNSYIKSQIASS-NFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA  693 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~-s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~  693 (886)
                      .+......+++.+ ++++.++. ...+.+..++............-....+.+++++ ++.++++....+.+++++... 
T Consensus        11 ~~~~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~-   87 (260)
T d1rwia_          11 DFRLSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSN-   87 (260)
T ss_dssp             CSCCCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCS-
T ss_pred             CCCCCCCEEEECC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECC-CCCEEEEEEEECEEEEEEECC-
T ss_conf             7769878899969-9999999718998899993899668974369866840899938-998898631000035542112-


Q ss_pred             HHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEEC
Q ss_conf             444204730344532798699998189996899993899099996589983469991279986799964-9998999978
Q 002736          694 ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAST  772 (886)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~  772 (886)
                            ............+.++++.++ ++++++...++.+..++........... ........+.+. ++..+++...
T Consensus        88 ------~~~~~~~~~~~~p~~iavd~~-g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~~  159 (260)
T d1rwia_          88 ------NQTVLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTD  159 (260)
T ss_dssp             ------CCEECCCCSCCSEEEEEECTT-CCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEGG
T ss_pred             ------CEEEEEEEEEEECCCCCCCCC-CEEEEECCCCCCCCCCCCCCCEEEEEEE-CCCCCCCEEEECCCCCEEEECCC
T ss_conf             ------000000100000000024553-2057503355532112322220122320-36677520545489988641025


Q ss_pred             CCCEEEEECCCCCCCCCCCCCEEE-ECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             994999947999766569881386-0678853499991399999998499929997139998610103579999998855
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSF-TGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPET  851 (886)
Q Consensus       773 Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  851 (886)
                      ++.|..++.....       ...+ ...-.....+++++++.++++....+.|..++...... ..+..           
T Consensus       160 ~~~i~~~d~~~~~-------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~-----------  220 (260)
T d1rwia_         160 NNRVVKLEAESNN-------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPF-----------  220 (260)
T ss_dssp             GTEEEEECTTTCC-------EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCC-----------
T ss_pred             CCCCCCCCCCCCE-------EEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEE-EEECC-----------
T ss_conf             6433222343100-------1222101147876312310001343214899899996999769-99706-----------


Q ss_pred             CCCCCCEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf             667995999999069995999984799799997
Q 002736          852 DDAAQFISSVCWRGQSSNTLVAANSSGNIKILE  884 (886)
Q Consensus       852 ~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~iw~  884 (886)
                       ..-....++++.+++. ++++-..++.|+.+.
T Consensus       221 -~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~  251 (260)
T d1rwia_         221 -TGLNTPLAVAVDSDRT-VYVADRGNDRVVKLT  251 (260)
T ss_dssp             -CSCCCEEEEEECTTCC-EEEEEGGGTEEEEEC
T ss_pred             -CCCCCEEEEEEECCCC-EEEEECCCCEEEEEE
T ss_conf             -9989817999908999-999979999899995

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=1.7e-07  Score=59.51  Aligned_cols=238  Identities=11%  Similarity=0.026  Sum_probs=156.4

Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHH
Q ss_conf             37898016998079998699962899199998788627888123587499999813999989998189949999475034
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI  694 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~  694 (886)
                      .....+..+++.+ +++++++...++.|..|+....  ...+......+++++|.+ +++++++...++.+..|+.....
T Consensus        25 p~~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~  100 (302)
T d2p4oa1          25 PVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSD  100 (302)
T ss_dssp             CTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTT
T ss_pred             CCCCCCCCEEECC-CCCEEEEECCCCEEEEEECCCC--EEEEECCCCCCCEEEECC-CCCEEEEECCCCEEEEEEECCCC
T ss_conf             8998847877999-9889999688998999908998--899971799853689867-78869983289537888710111


Q ss_pred             HHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEE---------CCCCCEEEEEECCCC
Q ss_conf             44204730344532798699998189996899993899099996589983469991---------279986799964999
Q 002736          695 LLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI---------GHNKTVSYVKFVDAT  765 (886)
Q Consensus       695 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~---------~h~~~V~~i~f~~~~  765 (886)
                      ..   ...+...........+.+.++ ++++++.+.++.+..+|.......+....         ........+.+..+.
T Consensus       101 ~~---~~~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~  176 (302)
T d2p4oa1         101 GT---VETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF  176 (302)
T ss_dssp             SC---EEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred             CC---EEECCCCCCCCCCCEEEECCC-CCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             10---121023578632216677157-97875035655410242168730367518864014315763224320116983


Q ss_pred             EEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCC
Q ss_conf             89999789949999479997665698813860678853499991399999998499929997139998610103579999
Q 002736          766 TLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADP  845 (886)
Q Consensus       766 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~  845 (886)
                      .+++.+..+.|..++.......   .....+ ........++++++|.++++...++.|..++....... ...      
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~---~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~-~~~------  245 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKP---GEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI-IAQ------  245 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCB---CCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE-EEC------
T ss_pred             EEEECCCCCEEEECCCCCCCCC---CCCCCC-CCCCCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEE-EEE------
T ss_conf             0440378876986344333323---453101-58998752378799999999748991899878997899-996------


Q ss_pred             CCCCCCCCCCCCEEEEEE---CCCCCCEEEEEECC
Q ss_conf             998855667995999999---06999599998479
Q 002736          846 LSGPETDDAAQFISSVCW---RGQSSNTLVAANSS  877 (886)
Q Consensus       846 ~~~~~~~~~~~~V~~v~~---~~~~~~~lvs~~~d  877 (886)
                           .........+++|   .+|++ .|..++..
T Consensus       246 -----~~~~~~~pt~vafg~~~~D~~-~Lyvtt~~  274 (302)
T d2p4oa1         246 -----AEQGVIGSTAVAFGQTEGDCT-AIYVVTNG  274 (302)
T ss_dssp             -----GGGTCTTEEEEEECCSTTTTT-EEEEEECT
T ss_pred             -----CCCCCCCCEEEEECCCCCCCC-EEEEECCC
T ss_conf             -----378988824899708788789-89999889

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=2e-07  Score=58.93  Aligned_cols=244  Identities=11%  Similarity=0.082  Sum_probs=136.7

Q ss_pred             CEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCE
Q ss_conf             8899999689998999968-------991999975864475665333348723789801699807999869996289919
Q 002736          570 LVCSLSFDRDGELFAAAGV-------NKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVV  642 (886)
Q Consensus       570 ~V~si~fs~dg~~latg~~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V  642 (886)
                      ..-..+|+++|++.++...       +++|..|+..+......  ..+. .....+....+.|.+ +++.+++++....+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~--~~~~-~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i   94 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI--CKPE-VNGYGGIPAGCQCDR-DANQLFVADMRLGL   94 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE--ECCE-ETTEECCEEEEEECS-SSSEEEEEETTTEE
T ss_pred             CCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEE--ECCC-CCCCCCCCEEEEEEC-CCCEEEEEECCCEE
T ss_conf             9717399699999999875402345299999998999959999--7776-556788530699907-99989999779839


Q ss_pred             EEEECCCCEEEEEECCCC----CCEEEEEECCCCCCEEEEEEC---------------CCCEEEEECCHHHHHHCCCCEE
Q ss_conf             999878862788812358----749999981399998999818---------------9949999475034442047303
Q 002736          643 QVWDVSRSQVLTEMREHE----RRVWSIDFSSADPTLLASGSD---------------DGSVKLWSINQAILLLHLGVSI  703 (886)
Q Consensus       643 ~iWd~~~~~~~~~~~~h~----~~V~~i~~sp~~~~~l~sgs~---------------Dg~v~iwdl~~~~~~~~~~~~~  703 (886)
                      ...+..............    ...+++.+.+ ++.+.++-+.               +|.|..++..        +...
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--------g~~~  165 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--------GQMI  165 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--------SCEE
T ss_pred             EEEECCCCEEEEEECCCCCCCCCCCCEEEECC-CCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEEC--------CCEE
T ss_conf             99947774799973343245457872789888-99899914866754320110002688438999525--------7403


Q ss_pred             EEEECCCCEEEEEEECCCC----CEEEEEECCCEEEEEECCCCCCCE-----EEEEC-CCCCEEEEEEC-CCCEEEEEEC
Q ss_conf             4453279869999818999----689999389909999658998346-----99912-79986799964-9998999978
Q 002736          704 GTIKTKANVCCVQFPLDSG----RSLAFGSADHRIYYYDLRNSKIPL-----CTLIG-HNKTVSYVKFV-DATTLVSAST  772 (886)
Q Consensus       704 ~~~~~~~~v~~i~~sp~~~----~~l~~gs~dg~I~iwDl~~~~~~~-----~~~~~-h~~~V~~i~f~-~~~~l~sgs~  772 (886)
                      .....-...+.++|+|+..    .++++.+..+.|..||+.......     ..+.+ .......+++. +++++++...
T Consensus       166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EEECCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECC
T ss_conf             75078532213699788776303799986024311776116765430156899713356664102578347857999827


Q ss_pred             CCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC-EEEEECCCCCEEEEECCCC
Q ss_conf             99499994799976656988138606788534999913999-9999849992999713999
Q 002736          773 DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG-YVATGSETNEVFVYHKAFP  832 (886)
Q Consensus       773 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~lasgs~dg~i~iwd~~~~  832 (886)
                      .+.|.+||...+      ..+..+.......++++|.++++ ++++.+.++.|..+++...
T Consensus       246 ~g~I~~~dp~~g------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         246 SSHIEVFGPDGG------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTEEEEECTTCB------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCEEEEEECCCC------EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf             999999969999------7999997999987899992898999999878991999978999

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=5.8e-07  Score=56.06  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=32.3

Q ss_pred             EEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCC-EEEEEECCCCEEEEECCC
Q ss_conf             699998189996899993899099996589983469991279986799964-999-899997899499994799
Q 002736          712 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DAT-TLVSASTDNTLKLWDLSM  783 (886)
Q Consensus       712 v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~-~l~sgs~Dg~I~iwd~~~  783 (886)
                      ...+++..+ ++++++....+.|..||..... ....+........+++|. +++ +++|.+..+.|...++..
T Consensus       228 pdGiavD~~-GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         228 ADGMDFDED-NNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEBTT-CCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEECC-CCEEEEECCCCEEEEEECCCCE-EEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf             102578347-8579998279999999699997-99999799998789999289899999987899199997899

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=7.9e-07  Score=55.21  Aligned_cols=220  Identities=15%  Similarity=0.133  Sum_probs=101.3

Q ss_pred             CCCEEEEEEECCCCCEEEEECC-CC--CEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEC-CCCEEEEECCH
Q ss_conf             8980169980799986999628-99--19999878862788812358749999981399998999818-99499994750
Q 002736          617 RSKLSSICWNSYIKSQIASSNF-EG--VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD-DGSVKLWSINQ  692 (886)
Q Consensus       617 ~~~I~~i~~~~~~~~~l~s~s~-Dg--~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~-Dg~v~iwdl~~  692 (886)
                      ...+..-+|+| +++.||.... .+  .+.+.+...+.. ..+..+........|+| ++..++..+. ++...++....
T Consensus        38 ~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          38 PQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEET
T ss_pred             CCCEEEEEECC-CCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECC-CCCEEEEEEECCCCCCEEECCC
T ss_conf             98426038878-999899998152675134431136750-67764202454302448-8986467640278641000022


Q ss_pred             HHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCE--EEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEE
Q ss_conf             34442047303445327986999981899968999938990--99996589983469991279986799964-9998999
Q 002736          693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR--IYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVS  769 (886)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~~gs~dg~--I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~s  769 (886)
                      ..     .................+++.....+++...++.  |..+++....  ...+..+........|+ ++..++.
T Consensus       115 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         115 AS-----GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             TT-----CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             CC-----CCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCC--CEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf             21-----2200001014421145434554433000012687438654213310--0010001222234322345430577


Q ss_pred             EEC-CCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECC---CCCEEEEECCCCCCCEEECCCCCCC
Q ss_conf             978-994999947999766569881386067885349999139999999849---9929997139998610103579999
Q 002736          770 AST-DNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSE---TNEVFVYHKAFPMPALSFNFNHADP  845 (886)
Q Consensus       770 gs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~---dg~i~iwd~~~~~~~~~~~~~~~~~  845 (886)
                      .+. .+...+|.......      ......+........|+|+|++|+..+.   ...++++++..+.+.. +.      
T Consensus       188 ~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt------  254 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATG------GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LP------  254 (269)
T ss_dssp             EEECSSCEEEEEEETTTC------CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CC------
T ss_pred             EEECCCCEEEEEEECCCC------CCEEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEE-EE------
T ss_conf             860588012567603564------40585068654455898999999999817998479999999997799-85------


Q ss_pred             CCCCCCCCCCCCEEEEEECCC
Q ss_conf             998855667995999999069
Q 002736          846 LSGPETDDAAQFISSVCWRGQ  866 (886)
Q Consensus       846 ~~~~~~~~~~~~V~~v~~~~~  866 (886)
                             .....+...+|+|-
T Consensus       255 -------~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         255 -------ATDGQVKFPAWSPY  268 (269)
T ss_dssp             -------CSSSEEEEEEECCC
T ss_pred             -------CCCCCEEEEEECCC
T ss_conf             -------79985883782898

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.1e-06  Score=54.36  Aligned_cols=220  Identities=10%  Similarity=0.064  Sum_probs=126.7

Q ss_pred             CCCCEEEEEECCCCCEEEEEECC-CC--EEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEE-ECCCCCE
Q ss_conf             99988999996899989999689-91--99997586447566533334872378980169980799986999-6289919
Q 002736          567 SSNLVCSLSFDRDGELFAAAGVN-KK--IKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS-SNFEGVV  642 (886)
Q Consensus       567 h~~~V~si~fs~dg~~latg~~d-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s-~s~Dg~V  642 (886)
                      +...+.+-+|||||+.||..... +.  +.+.+...        ........+........|+| ++..++. ...++..
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--------GAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSL  107 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--------CCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSC
T ss_pred             CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCC--------CCEEEEEEEECCCCCCEECC-CCCEEEEEEECCCCC
T ss_conf             898426038878999899998152675134431136--------75067764202454302448-898646764027864


Q ss_pred             EEEECCC-CEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEE--ECCHHHHHHCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             9998788-627888123587499999813999989998189949999--4750344420473034453279869999818
Q 002736          643 QVWDVSR-SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW--SINQAILLLHLGVSIGTIKTKANVCCVQFPL  719 (886)
Q Consensus       643 ~iWd~~~-~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iw--dl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  719 (886)
                      .++.... ..................+++.....+++...++...+|  ++..       .................|+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~sp  180 (269)
T d2hqsa1         108 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-------GAPQRITWEGSQNQDADVSS  180 (269)
T ss_dssp             EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------SCCEECCCSSSEEEEEEECT
T ss_pred             CEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCC-------CCCEEEECCCCCCCCCCCCC
T ss_conf             10000222122000010144211454345544330000126874386542133-------10001000122223432234


Q ss_pred             CCCCEEEEEEC-CCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCEEEEEEC---CCCEEEEECCCCCCCCCCCCCE
Q ss_conf             99968999938-99099996589983469991279986799964-9998999978---9949999479997665698813
Q 002736          720 DSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSAST---DNTLKLWDLSMCTSRVIDTPLH  794 (886)
Q Consensus       720 ~~~~~l~~gs~-dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~  794 (886)
                      + +..++..+. .+...+|....... ......+........|+ ||+.|+-.+.   ...|.++++....       ..
T Consensus       181 d-g~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-------~~  251 (269)
T d2hqsa1         181 D-GKFMVMVSSNGGQQHIAKQDLATG-GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-------KA  251 (269)
T ss_dssp             T-SSEEEEEEECSSCEEEEEEETTTC-CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-------EE
T ss_pred             C-CCEEEEEEECCCCEEEEEEECCCC-CCEEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCC-------EE
T ss_conf             5-430577860588012567603564-40585068654455898999999999817998479999999997-------79


Q ss_pred             EEECCCCCEEEEEEECC
Q ss_conf             86067885349999139
Q 002736          795 SFTGHTNVKNFVGLSVW  811 (886)
Q Consensus       795 ~~~~h~~~v~~v~~sp~  811 (886)
                      .+......+...+|+|-
T Consensus       252 ~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         252 RLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ECCCSSSEEEEEEECCC
T ss_pred             EEECCCCCEEEEEECCC
T ss_conf             98579985883782898

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=1.2e-06  Score=54.02  Aligned_cols=234  Identities=12%  Similarity=0.113  Sum_probs=148.6

Q ss_pred             CEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECC------CCCCEEEEEECCCCCCEEEEE-ECCCCEEEEECC
Q ss_conf             8016998079998699962899199998788627888123------587499999813999989998-189949999475
Q 002736          619 KLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE------HERRVWSIDFSSADPTLLASG-SDDGSVKLWSIN  691 (886)
Q Consensus       619 ~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~------h~~~V~~i~~sp~~~~~l~sg-s~Dg~v~iwdl~  691 (886)
                      ....+++.+ +++++++-.....|++||.. ++.+..+..      .......+.+.+..+..+++. +.++.|..++..
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCCEEEECC-CCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf             900799949-99899997998989999699-9999981665788664226630001234455200004775310000025


Q ss_pred             HHHHHHCCCCEEEEEEC--CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEE--CCCCCEEEEEEC-CCCE
Q ss_conf             03444204730344532--798699998189996899993899099996589983469991--279986799964-9998
Q 002736          692 QAILLLHLGVSIGTIKT--KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI--GHNKTVSYVKFV-DATT  766 (886)
Q Consensus       692 ~~~~~~~~~~~~~~~~~--~~~v~~i~~sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~~--~h~~~V~~i~f~-~~~~  766 (886)
                              +.....+..  -.....+++.++ +.++++....+.+.+++.. ++ .+..+.  .+......+++. ++..
T Consensus       102 --------g~~~~~~~~~~~~~p~~~avd~~-G~i~v~~~~~~~~~~~~~~-g~-~~~~~g~~~~~~~~~~i~~d~~g~i  170 (279)
T d1q7fa_         102 --------GQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQN-GN-VLHKFGCSKHLEFPNGVVVNDKQEI  170 (279)
T ss_dssp             --------SCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTT-SC-EEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             --------CCCEEECCCCCCCCCCEECCCCC-CCEEEEEECCCEEEEECCC-CC-EEECCCCCCCCCCCCEEEECCCEEE
T ss_conf             --------63024038886425420000147-8479996326325676268-75-0100220010256624320120017


Q ss_pred             EEEEECCCCEEEEECCCCCCCCCCCCCEEEE--CCCCCEEEEEEECCCCEEEEECC-CCCEEEEECCCCCCCEEECCCCC
Q ss_conf             9999789949999479997665698813860--67885349999139999999849-99299971399986101035799
Q 002736          767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFT--GHTNVKNFVGLSVWDGYVATGSE-TNEVFVYHKAFPMPALSFNFNHA  843 (886)
Q Consensus       767 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~~  843 (886)
                      +++....+.|++||....       .+.++.  +.......+++.+++.++++-+. ++.|.+|+. .++.+..+.... 
T Consensus       171 ~v~d~~~~~V~~~d~~G~-------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~-  241 (279)
T d1q7fa_         171 FISDNRAHCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-  241 (279)
T ss_dssp             EEEEGGGTEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-
T ss_pred             EEEECCCCCEEEEECCCC-------EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCC-
T ss_conf             862013551002304794-------44530113211487623231478699997899808999999-999999996888-


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEC
Q ss_conf             9999885566799599999906999599998479979999709
Q 002736          844 DPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV  886 (886)
Q Consensus       844 ~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~iw~l~  886 (886)
                                .......|+..+++. +++ ++.+..|++|+..
T Consensus       242 ----------~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         242 ----------KHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             ----------CCSCEEEEEEETTTE-EEE-EETTTEEEEEECS
T ss_pred             ----------CCCCEEEEEEECCCC-EEE-EECCCEEEEEEEE
T ss_conf             ----------889883799908991-999-9189969998722

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.78  E-value=2.2e-06  Score=52.42  Aligned_cols=258  Identities=9%  Similarity=0.034  Sum_probs=136.8

Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCC-EEEEEE-CCCCCCEEEEEECCCCCCEE--EEEE-CCCCEEEEE
Q ss_conf             378980169980799986999628991999987886-278881-23587499999813999989--9981-899499994
Q 002736          615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRS-QVLTEM-REHERRVWSIDFSSADPTLL--ASGS-DDGSVKLWS  689 (886)
Q Consensus       615 ~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~-~~~~~~-~~h~~~V~~i~~sp~~~~~l--~sgs-~Dg~v~iwd  689 (886)
                      .....++-|++++ ++++++++. .+.+..|.+... ...... .........+.+++ +++.+  ++.. ..++|..+.
T Consensus        37 ~~~~~~s~la~s~-d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          37 PQDEPISWMTFDH-ERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CTTCCCSEEEECT-TSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCCCEEEECC-CCCEEEEEE-CCCEEEEEEECCCCEEEEEEECCCCCCEEEEECC-CCCEEEEEEECCCCCEEEEEE
T ss_conf             6899977799948-989999993-8947899990899769876412899867899878-998799999327997899867


Q ss_pred             CCHHHHH---------HCCCCEEEEE--ECCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCCCE--EEEE--CCC
Q ss_conf             7503444---------2047303445--32798699998189996899993-89909999658998346--9991--279
Q 002736          690 INQAILL---------LHLGVSIGTI--KTKANVCCVQFPLDSGRSLAFGS-ADHRIYYYDLRNSKIPL--CTLI--GHN  753 (886)
Q Consensus       690 l~~~~~~---------~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~~gs-~dg~I~iwDl~~~~~~~--~~~~--~h~  753 (886)
                      +......         ..........  .....+.++.|+|+ ++++++.. ....|.+|+........  ....  ...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPd-G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             CCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCC-CCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCC
T ss_conf             457887420686640330047646755688981159788899-9989982079987999970688716652511112788


Q ss_pred             CCEEEEEEC-CCCEEEEEE-CCCCEEEEECCCCCCCCCCCCCEEE--------------ECCCCCEEEEEEECCCCEEEE
Q ss_conf             986799964-999899997-8994999947999766569881386--------------067885349999139999999
Q 002736          754 KTVSYVKFV-DATTLVSAS-TDNTLKLWDLSMCTSRVIDTPLHSF--------------TGHTNVKNFVGLSVWDGYVAT  817 (886)
Q Consensus       754 ~~V~~i~f~-~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~--------------~~h~~~v~~v~~sp~~~~las  817 (886)
                      .....+.|+ ++++++... .+++|.+|++........ ......              ..+......+.++|+++++++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV-YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEE
T ss_conf             74089998899866999515899899999559875377-87312402455655666544443577631699899997899


Q ss_pred             ECC-C-----CCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCEEEEE-ECCCCEEEEEE
Q ss_conf             849-9-----92999713999861010357999999885566799599999906-999599998-47997999970
Q 002736          818 GSE-T-----NEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRG-QSSNTLVAA-NSSGNIKILEM  885 (886)
Q Consensus       818 gs~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~~~~-~~~~~lvs~-~~dg~I~iw~l  885 (886)
                      +.. +     ..|..|++.....+.........       ........+++++| ++. .|+.+ ..++.|.+|++
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-------~~~G~~p~~i~~~p~~G~-~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-------PTSGGHSNAVSPCPWSDE-WMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-------SSCCTTCCCEEECTTCTT-EEEEECSSSCEEEEEEE
T ss_pred             ECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEE-------ECCCCCCCEEEECCCCCC-EEEEEECCCCEEEEEEE
T ss_conf             713578754227999985688714467676677-------767998647896489999-99999679994999998

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.71  E-value=5.4e-06  Score=49.93  Aligned_cols=227  Identities=11%  Similarity=0.057  Sum_probs=132.2

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECC----CCCEEEE
Q ss_conf             889999968999899996899199997586447566533334872378980169980799986999628----9919999
Q 002736          570 LVCSLSFDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNF----EGVVQVW  645 (886)
Q Consensus       570 ~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~----Dg~V~iW  645 (886)
                      .+-.+.|+++|++.++--..++|..|+.+...       ..............+++.+ ++.++++...    .+.+...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred             CCEECEECCCCCEEEEECCCCEEEEEECCCCE-------EEEEEECCCCCEEEEEECC-CCCEEEEECCCCCCCEEEEEE
T ss_conf             74707899999999997799999999899995-------9999948998703899999-999999956897311049987


Q ss_pred             ECCCCEEEEEECC--CCCCEEEEEECCCCCCEEEEEECC------CCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEE
Q ss_conf             8788627888123--587499999813999989998189------94999947503444204730344532798699998
Q 002736          646 DVSRSQVLTEMRE--HERRVWSIDFSSADPTLLASGSDD------GSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQF  717 (886)
Q Consensus       646 d~~~~~~~~~~~~--h~~~V~~i~~sp~~~~~l~sgs~D------g~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~  717 (886)
                      +............  -....+.+.+.+ ++.+.++....      +.+..++...       .........-...+.++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg-------~~~~~~~~~~~~pnGia~  184 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF-------RTVTPIIQNISVANGIAL  184 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS-------CCEEEEEEEESSEEEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCCCCEEEEE-CCCEEECCCCCCCCCCCCEEEEEECCC-------CEEEEEEECCCEEEEEEE
T ss_conf             389963644426777555875226773-065320013540025742157884166-------335788612330100010


Q ss_pred             ECCCCCEEEEEECCCEEEEEECCCCCCCEEEE-------ECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf             18999689999389909999658998346999-------1279986799964-999899997899499994799976656
Q 002736          718 PLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL-------IGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVI  789 (886)
Q Consensus       718 sp~~~~~l~~gs~dg~I~iwDl~~~~~~~~~~-------~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~  789 (886)
                      +|+...++++-+..+.|+.||+..........       .........+++. +|+++++....+.|.+||-. +     
T Consensus       185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G-----  258 (319)
T d2dg1a1         185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G-----  258 (319)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S-----
T ss_pred             CCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCC-C-----
T ss_conf             1222127874046891479997699836202463333125776410364173899999998489989999799-9-----


Q ss_pred             CCCCEEEE------CCCCCEEEEEEECCCCEEEEEC
Q ss_conf             98813860------6788534999913999999984
Q 002736          790 DTPLHSFT------GHTNVKNFVGLSVWDGYVATGS  819 (886)
Q Consensus       790 ~~~~~~~~------~h~~~v~~v~~sp~~~~lasgs  819 (886)
                       +.+..+.      ++...+++++|.++...+.+.+
T Consensus       259 -~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         259 -YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             -CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             -CEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEC
T ss_conf             -59889968875778675046677807998899985

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.66  E-value=7.9e-06  Score=48.89  Aligned_cols=236  Identities=14%  Similarity=0.101  Sum_probs=127.8

Q ss_pred             CEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECC----CCEEEEECCHHH
Q ss_conf             8016998079998699962899199998788627888123587499999813999989998189----949999475034
Q 002736          619 KLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDD----GSVKLWSINQAI  694 (886)
Q Consensus       619 ~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~D----g~v~iwdl~~~~  694 (886)
                      .+..++|.+ ++++.++-...+.|..|+....+....+.........+++.+ ++.++++...+    +.+...+...  
T Consensus        41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~--  116 (319)
T d2dg1a1          41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENG--  116 (319)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTS--
T ss_pred             CCEECEECC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCCCEEEEEECCCC--
T ss_conf             747078999-999999977999999998999959999948998703899999-9999999568973110499873899--


Q ss_pred             HHHCCCCEEEEEE---CCCCEEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CC
Q ss_conf             4420473034453---27986999981899968999938------99099996589983469991279986799964-99
Q 002736          695 LLLHLGVSIGTIK---TKANVCCVQFPLDSGRSLAFGSA------DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DA  764 (886)
Q Consensus       695 ~~~~~~~~~~~~~---~~~~v~~i~~sp~~~~~l~~gs~------dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~  764 (886)
                           ........   ....+..+.+.++ |++.++...      .+.+..++.....  +..+...-...+.++|+ ++
T Consensus       117 -----~~~~~~~~~~~~~~~~nd~~~d~~-G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg  188 (319)
T d2dg1a1         117 -----DNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDE  188 (319)
T ss_dssp             -----CSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTS
T ss_pred             -----CEEEEECCCCCCCCCCCCEEEEEC-CCEEECCCCCCCCCCCCEEEEEECCCCE--EEEEEECCCEEEEEEECCCC
T ss_conf             -----636444267775558752267730-6532001354002574215788416633--57886123301000101222


Q ss_pred             CEE-EEEECCCCEEEEECCCCCCCCCC--CCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCC
Q ss_conf             989-99978994999947999766569--881386067885349999139999999849992999713999861010357
Q 002736          765 TTL-VSASTDNTLKLWDLSMCTSRVID--TPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFN  841 (886)
Q Consensus       765 ~~l-~sgs~Dg~I~iwd~~~~~~~~~~--~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~  841 (886)
                      +.| ++-+..+.|..|++.........  ...............+++..+|.+.++....+.|.+|+. .++.+..+..+
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P  267 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  267 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             CEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECC
T ss_conf             12787404689147999769983620246333312577641036417389999999848998999979-99598899688


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf             9999998855667995999999069995999984
Q 002736          842 HADPLSGPETDDAAQFISSVCWRGQSSNTLVAAN  875 (886)
Q Consensus       842 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~  875 (886)
                      ...       ..+...+.+++|.++.. .+++..
T Consensus       268 ~~~-------~~~~~~~~~~~~~~~~~-~~~~t~  293 (319)
T d2dg1a1         268 GRD-------EGHMLRSTHPQFIPGTN-QLIICS  293 (319)
T ss_dssp             TGG-------GTCSCBCCEEEECTTSC-EEEEEE
T ss_pred             CCC-------CCCCCEEEEEEEECCCC-EEEEEC
T ss_conf             757-------78675046677807998-899985

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=8e-06  Score=48.87  Aligned_cols=153  Identities=7%  Similarity=-0.034  Sum_probs=69.9

Q ss_pred             CEEEEEEECCCCCEEEEEEC-C---CEEEEEECCCCCCCEEEEECCCCCE----EEEEEC-CCCEE--EEEE-CCC--CE
Q ss_conf             86999981899968999938-9---9099996589983469991279986----799964-99989--9997-899--49
Q 002736          711 NVCCVQFPLDSGRSLAFGSA-D---HRIYYYDLRNSKIPLCTLIGHNKTV----SYVKFV-DATTL--VSAS-TDN--TL  776 (886)
Q Consensus       711 ~v~~i~~sp~~~~~l~~gs~-d---g~I~iwDl~~~~~~~~~~~~h~~~V----~~i~f~-~~~~l--~sgs-~Dg--~I  776 (886)
                      -+..+.|.|+ +++++.... +   ..+.++|..+++.....-......|    ....|+ ++..+  +..+ .+|  .+
T Consensus       256 y~~~~~W~~d-~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~l  334 (465)
T d1xfda1         256 YITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (465)
T ss_dssp             EEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             EEEEEEECCC-CEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCE
T ss_conf             0456687579-938999974100301379970799927877897278517356786057468980577776543166716


Q ss_pred             EEEECCCCCCCCCCCCCEEEECCCCCEEE-EEEECCCCEE-EEECCC--CCEEEEECCC--CCCCEEECCCCCCCCCCCC
Q ss_conf             99947999766569881386067885349-9991399999-998499--9299971399--9861010357999999885
Q 002736          777 KLWDLSMCTSRVIDTPLHSFTGHTNVKNF-VGLSVWDGYV-ATGSET--NEVFVYHKAF--PMPALSFNFNHADPLSGPE  850 (886)
Q Consensus       777 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-v~~sp~~~~l-asgs~d--g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~  850 (886)
                      ...++...........+..+....-.|.. ++|+.+++.| .++..+  +.-.+|.+..  +.....+...         
T Consensus       335 y~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~---------  405 (465)
T d1xfda1         335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD---------  405 (465)
T ss_dssp             EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT---------
T ss_pred             EEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCC---------
T ss_conf             89983156666788626982269921997789838999999999689998268999977899860553144---------


Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf             5667995999999069995999984
Q 002736          851 TDDAAQFISSVCWRGQSSNTLVAAN  875 (886)
Q Consensus       851 ~~~~~~~V~~v~~~~~~~~~lvs~~  875 (886)
                       .........+.|+|++. .++...
T Consensus       406 -~~~~~~~~~~~~S~~~~-y~v~~~  428 (465)
T d1xfda1         406 -LVENCTYFSASFSHSMD-FFLLKC  428 (465)
T ss_dssp             -SSSSCCCCEEEECTTSS-EEEEEC
T ss_pred             -CCCCCCEEEEEECCCCC-EEEEEE
T ss_conf             -67889879999999999-999980

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.9e-06  Score=48.55  Aligned_cols=168  Identities=10%  Similarity=0.039  Sum_probs=74.9

Q ss_pred             CEEEEEECCCCCCEEEEEEC-C---CCEEEEECCHHHHHHCCCCEEEEE--ECCCCE----EEEEEECCCCCEEE-EEE-
Q ss_conf             49999981399998999818-9---949999475034442047303445--327986----99998189996899-993-
Q 002736          662 RVWSIDFSSADPTLLASGSD-D---GSVKLWSINQAILLLHLGVSIGTI--KTKANV----CCVQFPLDSGRSLA-FGS-  729 (886)
Q Consensus       662 ~V~~i~~sp~~~~~l~sgs~-D---g~v~iwdl~~~~~~~~~~~~~~~~--~~~~~v----~~i~~sp~~~~~l~-~gs-  729 (886)
                      -+..+.|.| ++..++...+ +   ..+.++|..+       +......  ...+.|    ....|.+++..++. ..+ 
T Consensus       256 y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~t-------g~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se  327 (465)
T d1xfda1         256 YITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT-------GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (465)
T ss_dssp             EEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT-------CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             EEEEEEECC-CCEEEEEEECCCCCCCEEEEECCCC-------CCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEE
T ss_conf             045668757-9938999974100301379970799-------92787789727851735678605746898057777654


Q ss_pred             CCC--EEEEEECCC-----CCCCEEEEECCCCCEEEE-EEC-CCC-EEEEEECCC--CEEEEECCCCCCCCCCCCCEEEE
Q ss_conf             899--099996589-----983469991279986799-964-999-899997899--49999479997665698813860
Q 002736          730 ADH--RIYYYDLRN-----SKIPLCTLIGHNKTVSYV-KFV-DAT-TLVSASTDN--TLKLWDLSMCTSRVIDTPLHSFT  797 (886)
Q Consensus       730 ~dg--~I~iwDl~~-----~~~~~~~~~~h~~~V~~i-~f~-~~~-~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~  797 (886)
                      .+|  .++.+++..     .......+....-.|..+ .|. ++. .++++..++  .-.+|.+.-..... ..++....
T Consensus       328 ~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~-~~~lt~~~  406 (465)
T d1xfda1         328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN-RQCLSCDL  406 (465)
T ss_dssp             CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC-CBCSSTTS
T ss_pred             ECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCC-CEEECCCC
T ss_conf             31667168998315666678862698226992199778983899999999968999826899997789986-05531446


Q ss_pred             CCCCCEEEEEEECCCCEEEEECC---CCCEEEEECCCCCCCEEE
Q ss_conf             67885349999139999999849---992999713999861010
Q 002736          798 GHTNVKNFVGLSVWDGYVATGSE---TNEVFVYHKAFPMPALSF  838 (886)
Q Consensus       798 ~h~~~v~~v~~sp~~~~lasgs~---dg~i~iwd~~~~~~~~~~  838 (886)
                      ........+.|||++++++....   --.+.+++...++.+..+
T Consensus       407 ~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~L  450 (465)
T d1xfda1         407 VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (465)
T ss_dssp             SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf             78898799999999999999800699984999999999799997

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.17  E-value=0.00012  Score=41.31  Aligned_cols=219  Identities=9%  Similarity=0.017  Sum_probs=115.0

Q ss_pred             EEEECC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCE
Q ss_conf             999968-9998999968991999975864475665333348723789801699807999869996289919999878862
Q 002736          573 SLSFDR-DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ  651 (886)
Q Consensus       573 si~fs~-dg~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~  651 (886)
                      +..|++ ++.+..+--..++|..|+..+..         .........+.++.+.+ ++.+++++ .+ .+.++|..+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~---------~~~~~~~~~~~~i~~~~-dg~l~va~-~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR---------KTVHALPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE---------EEEEECSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCC
T ss_pred             CCEEECCCCEEEEEECCCCEEEEEECCCCE---------EEEEECCCCCEEEEEEC-CCCEEEEE-EC-CCEEEECCCCE
T ss_conf             875989999999998789999999899895---------99998999817989965-99889997-37-63895046451


Q ss_pred             EEEEEC--C--CCCCEEEEEECCCCCCEEEEEECC----CCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf             788812--3--587499999813999989998189----94999947503444204730344532798699998189996
Q 002736          652 VLTEMR--E--HERRVWSIDFSSADPTLLASGSDD----GSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGR  723 (886)
Q Consensus       652 ~~~~~~--~--h~~~V~~i~~sp~~~~~l~sgs~D----g~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  723 (886)
                      ......  .  ....++++.+.| ++.+.++....    +.-.+|.+..       +........-...+.+.|+++...
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~-------g~~~~~~~~~~~~Ng~~~s~d~~~  161 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAK-------GKVTKLFADISIPNSICFSPDGTT  161 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEET-------TEEEEEEEEESSEEEEEECTTSCE
T ss_pred             EEEEEEEECCCCCCCCEEEEECC-CCCEEEEECCCCCCCCCEEEEEECC-------CCEEEEEECCCCCCEEEECCCCCE
T ss_conf             35786640478766101357979-9999887426431333305766229-------968998650687640246587766


Q ss_pred             EEEEEECCCEEEEEECCCCC-----CCE--EEEECCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEE
Q ss_conf             89999389909999658998-----346--9991279986799964-999899997899499994799976656988138
Q 002736          724 SLAFGSADHRIYYYDLRNSK-----IPL--CTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS  795 (886)
Q Consensus       724 ~l~~gs~dg~I~iwDl~~~~-----~~~--~~~~~h~~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  795 (886)
                      ++++.+..+.|+.|++....     .+.  ..+.+.......+++. +|++.++.-..+.|..||-..       +.+..
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G-------~~~~~  234 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-------NHIAR  234 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-------CEEEE
T ss_pred             EEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCCC-------CEEEE
T ss_conf             89851566324676453555532453578841675556663267869999895320788468856999-------28668


Q ss_pred             EECCCCCEEEEEEE-CCCC-EEEEE
Q ss_conf             60678853499991-3999-99998
Q 002736          796 FTGHTNVKNFVGLS-VWDG-YVATG  818 (886)
Q Consensus       796 ~~~h~~~v~~v~~s-p~~~-~lasg  818 (886)
                      +.-....+++++|- ++.+ +++|.
T Consensus       235 i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         235 YEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ECCCCCCEEEEEEECCCCCEEEEEE
T ss_conf             6389985279898289999999997

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.09  E-value=0.00018  Score=40.31  Aligned_cols=226  Identities=13%  Similarity=-0.015  Sum_probs=111.4

Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCC
Q ss_conf             69980799986999628991999987886278881235874999998139999899981899499994750344420473
Q 002736          622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGV  701 (886)
Q Consensus       622 ~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~  701 (886)
                      +..|.+.++.+..+--..+.|..||..+++.. .+. ....+.++.+.+ ++.++++ +.+| +.++|..++       .
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~g-l~~~d~~tg-------~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDDG-LFLRDTATG-------V   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETTE-EEEEETTTC-------C
T ss_pred             CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEEC-CCCEEEE-EECC-CEEEECCCC-------E
T ss_conf             87598999999999878999999989989599-998-999817989965-9988999-7376-389504645-------1


Q ss_pred             EEEEEE--C---CCCEEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCCCEEEEECCCCCEEEEEEC-CCCE-EEEE
Q ss_conf             034453--2---7986999981899968999938----99099996589983469991279986799964-9998-9999
Q 002736          702 SIGTIK--T---KANVCCVQFPLDSGRSLAFGSA----DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT-LVSA  770 (886)
Q Consensus       702 ~~~~~~--~---~~~v~~i~~sp~~~~~l~~gs~----dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~-~~~~-l~sg  770 (886)
                      ......  .   ...++.+.+.|+ |++.++...    .+.-.+|.+..++  +..+...-..-+.+.|+ ++.. +++.
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVAKGK--VTKLFADISIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEETTE--EEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             EEEEEEEECCCCCCCCEEEEECCC-CCEEEEECCCCCCCCCEEEEEECCCC--EEEEEECCCCCCEEEECCCCCEEEEEE
T ss_conf             357866404787661013579799-99988742643133330576622996--899865068764024658776689851


Q ss_pred             ECCCCEEEEECCCCCCCCCCCCC--EEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCCCCC
Q ss_conf             78994999947999766569881--3860678853499991399999998499929997139998610103579999998
Q 002736          771 STDNTLKLWDLSMCTSRVIDTPL--HSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSG  848 (886)
Q Consensus       771 s~Dg~I~iwd~~~~~~~~~~~~~--~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  848 (886)
                      +..+.|..+++............  ..+.+.......+++..+|.+.++.-..+.|..|+. .++.+..+.....     
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~-----  240 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-----  240 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS-----
T ss_pred             CCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCC-----
T ss_conf             5663246764535555324535788416755566632678699998953207884688569-9928668638998-----


Q ss_pred             CCCCCCCCCEEEEEEC-CCCCCEEEEEEC
Q ss_conf             8556679959999990-699959999847
Q 002736          849 PETDDAAQFISSVCWR-GQSSNTLVAANS  876 (886)
Q Consensus       849 ~~~~~~~~~V~~v~~~-~~~~~~lvs~~~  876 (886)
                              .++++||- ++.+.+++|...
T Consensus       241 --------~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         241 --------QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             --------BEEEEEEESTTSCEEEEEEBC
T ss_pred             --------CEEEEEEECCCCCEEEEEECC
T ss_conf             --------527989828999999999787

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.71  E-value=0.00081  Score=36.15  Aligned_cols=228  Identities=9%  Similarity=0.015  Sum_probs=100.6

Q ss_pred             ECCC--CCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECC-CC-----CEEEEEC
Q ss_conf             9689--99899996899199997586447566533334872378980169980799986999628-99-----1999987
Q 002736          576 FDRD--GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNF-EG-----VVQVWDV  647 (886)
Q Consensus       576 fs~d--g~~latg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~-Dg-----~V~iWd~  647 (886)
                      .+||  |+.+|-... +.|.+.++...        .+.....+.+.+....|+| ++..||.... ++     .|.+++.
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g--------~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSG--------STRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTC--------CEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             CCCCCCCCEEEEEEC-CCEEEEECCCC--------CEEEEECCCCCCCCEEECC-CCCEEEEEEEECCCCCCEEEEEEEE
T ss_conf             588879999999909-96899989999--------8799766998526779878-9998999986289877228999982


Q ss_pred             CCCEEEEEEC------CCCCCEEEEEECCCCCCEEEEEECC------CCEEEEECCHHHHHHCCCCEEEEEECCCCEEEE
Q ss_conf             8862788812------3587499999813999989998189------949999475034442047303445327986999
Q 002736          648 SRSQVLTEMR------EHERRVWSIDFSSADPTLLASGSDD------GSVKLWSINQAILLLHLGVSIGTIKTKANVCCV  715 (886)
Q Consensus       648 ~~~~~~~~~~------~h~~~V~~i~~sp~~~~~l~sgs~D------g~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i  715 (886)
                      ..++......      ..........|+| +++.++.....      ..+...+...       ....  .........+
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~  145 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDG-------INFV--PLNLGPATHI  145 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGG-------TEEE--ECCSCSCSEE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCEEEEEECCCCCCCCEEEEEECCCC-------CEEE--EECCCCCCEE
T ss_conf             59952886416887547644434310279-887799997137876520246515877-------6068--8017865234


Q ss_pred             EEECCCCCEEEEEECCC-----------EEEEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECC--CCEEEEECC
Q ss_conf             98189996899993899-----------09999658998346999127998679996499989999789--949999479
Q 002736          716 QFPLDSGRSLAFGSADH-----------RIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTD--NTLKLWDLS  782 (886)
Q Consensus       716 ~~sp~~~~~l~~gs~dg-----------~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~l~sgs~D--g~I~iwd~~  782 (886)
                       +.++++..++......           ...........  ...............+.....+.....+  ..|.++|+.
T Consensus       146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  222 (281)
T d1k32a2         146 -LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA--FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLD  222 (281)
T ss_dssp             -EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE--EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETT
T ss_pred             -EECCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCC--EEECCCCCCCCCEEEEECCCCCEECCCCCCCCEEEEECC
T ss_conf             -64699849886204664044420588620444113661--224047766642133103532000113455212899689


Q ss_pred             CCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCC
Q ss_conf             99766569881386067885349999139999999849992999713999861
Q 002736          783 MCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPA  835 (886)
Q Consensus       783 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~  835 (886)
                      ...       ...+..+. ......|+|+|+.|+... ++.|+++++..++..
T Consensus       223 g~~-------~~~lt~~~-~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         223 GKD-------LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE  266 (281)
T ss_dssp             SCS-------CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE
T ss_pred             CCC-------EEEEECCC-CCCCCCCCCCCCEEEEEE-CCEEEEEECCCCCEE
T ss_conf             996-------59810589-864432867989999985-999999989999878

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.0014  Score=34.57  Aligned_cols=202  Identities=9%  Similarity=-0.052  Sum_probs=75.1

Q ss_pred             CEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHC
Q ss_conf             80169980799986999628991999987886278881235874999998139999899981899499994750344420
Q 002736          619 KLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLH  698 (886)
Q Consensus       619 ~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~  698 (886)
                      .+..++|....+.++.+-..++.|...++........+......+.++++....+.+..+-...+.|.+.++..      
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg------  110 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG------  110 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS------
T ss_pred             CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCC------
T ss_conf             57999998589999999899991999976658728988701264207999636886888426789799880588------


Q ss_pred             CCCEEEEEEC-CCCEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCCCCEEEEECCCCCEEEEEEC--CCCEEEEEECC
Q ss_conf             4730344532-7986999981899968999938--99099996589983469991279986799964--99989999789
Q 002736          699 LGVSIGTIKT-KANVCCVQFPLDSGRSLAFGSA--DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTD  773 (886)
Q Consensus       699 ~~~~~~~~~~-~~~v~~i~~sp~~~~~l~~gs~--dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~--~~~~l~sgs~D  773 (886)
                       ......+.. -..+..++++|..+.++.+-..  ...|.-.++.... ........-.....+++.  .+.++++-...
T Consensus       111 -~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         111 -TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             -CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -CEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCC-CEEEEEECCCCCCEEEEEECCCEEEEEECCC
T ss_conf             -16777712566687279992566927995348997689996678997-2365530355553079950475899992899


Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCE
Q ss_conf             949999479997665698813860678853499991399999998499929997139998610
Q 002736          774 NTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPAL  836 (886)
Q Consensus       774 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~  836 (886)
                      +.|...++.....      ...+.+... ...+++. ++.+..+-...+.|...++..++.+.
T Consensus       189 ~~I~~~~~~g~~~------~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         189 HRAECLNPAQPGR------RKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             TEEEEEETTEEEE------EEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCCE------EEEECCCCC-CEEEEEE-CCEEEEEECCCCEEEEEECCCCCCCE
T ss_conf             9999999999976------999889998-6899999-99999999999979999898995106

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.45  E-value=0.0018  Score=33.93  Aligned_cols=20  Identities=20%  Similarity=0.252  Sum_probs=12.4

Q ss_pred             CCCCEEEEEECCCCCEEEEE
Q ss_conf             99988999996899989999
Q 002736          567 SSNLVCSLSFDRDGELFAAA  586 (886)
Q Consensus       567 h~~~V~si~fs~dg~~latg  586 (886)
                      +...+....|+|||+.||..
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEE
T ss_pred             CCCCCCCEEECCCCCEEEEE
T ss_conf             99852677987899989999

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0069  Score=30.26  Aligned_cols=202  Identities=10%  Similarity=-0.008  Sum_probs=120.4

Q ss_pred             CCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEEC
Q ss_conf             988999996899989-9996899199997586447566533334872378980169980799986999628991999987
Q 002736          569 NLVCSLSFDRDGELF-AAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDV  647 (886)
Q Consensus       569 ~~V~si~fs~dg~~l-atg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~  647 (886)
                      ..+.+++|+...+.+ .+-..++.|+..+++....       .......-..+.++++....+++..+-...+.|.+.++
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-------~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCC-------EEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf             75799999858999999989999199997665872-------89887012642079996368868884267897998805


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEE--CCCCEEEEEEECCCCCEE
Q ss_conf             886278881235874999998139999899981899499994750344420473034453--279869999818999689
Q 002736          648 SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK--TKANVCCVQFPLDSGRSL  725 (886)
Q Consensus       648 ~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l  725 (886)
                      ........+...-...+.+++.|..+.++.+-...+..+||.....      +.....+-  .-.....+++.+..+.++
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d------G~~~~~i~~~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD------GTNRRILAQDNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT------SCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCC------CCCCEEEEEECCCCCCEEEEEECCCEEE
T ss_conf             8816777712566687279992566927995348997689996678------9972365530355553079950475899


Q ss_pred             EEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             999389909999658998346999127998679996499989999789949999479997
Q 002736          726 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT  785 (886)
Q Consensus       726 ~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~l~sgs~Dg~I~iwd~~~~~  785 (886)
                      .+-...+.|...|+..... ...+.+.. ....+++..+..++|-...+.|...|..++.
T Consensus       183 w~d~~~~~I~~~~~~g~~~-~~v~~~~~-~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGR-RKVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EEETTTTEEEEEETTEEEE-EEEEECCC-SEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCCCCE-EEEECCCC-CCEEEEEECCEEEEEECCCCEEEEEECCCCC
T ss_conf             9928999999999999976-99988999-8689999999999999999979999898995

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.32  E-value=0.016  Score=27.90  Aligned_cols=69  Identities=13%  Similarity=0.093  Sum_probs=29.9

Q ss_pred             EEEEECCCCCEEEEECCC-CCEEEEECCCCEEEEEECC-CCCCEEEEEECCCCCCEEEEEECC------CCEEEEECCH
Q ss_conf             699807999869996289-9199998788627888123-587499999813999989998189------9499994750
Q 002736          622 SICWNSYIKSQIASSNFE-GVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDD------GSVKLWSINQ  692 (886)
Q Consensus       622 ~i~~~~~~~~~l~s~s~D-g~V~iWd~~~~~~~~~~~~-h~~~V~~i~~sp~~~~~l~sgs~D------g~v~iwdl~~  692 (886)
                      ...+.+ ++.+++.|+.+ ..+.+||..+......-.. ....-.+....+ ++..++.|+.+      ..+.+||..+
T Consensus        80 ~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          80 GISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EEEEEC-CCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEC-CCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf             899946-88689863688862167567557442156566421013035531-782665213663335432056634888

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.29  E-value=0.017  Score=27.79  Aligned_cols=63  Identities=10%  Similarity=-0.039  Sum_probs=36.9

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCC
Q ss_conf             9499994799976656988138606788534999913999999984999299971399986101035799
Q 002736          774 NTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHA  843 (886)
Q Consensus       774 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~  843 (886)
                      |.|..+|+.+++.      +-... ...+..+-.++..+.++..|+.|+.++.+|..+++.+.++.+...
T Consensus       444 G~l~AiD~~TG~~------~W~~~-~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~  506 (571)
T d2ad6a1         444 GQIRAFDLTTGKA------KWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEEEEECTTTCCE------EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCEEEECCCCCCE------EEECC-CCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf             6178853677846------42767-899987560596699799977899699999999868789989999

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.022  Score=27.10  Aligned_cols=205  Identities=13%  Similarity=0.031  Sum_probs=89.6

Q ss_pred             CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEE
Q ss_conf             99889999968999899-99689919999758644756653333487237898016998079998699962899199998
Q 002736          568 SNLVCSLSFDRDGELFA-AAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWD  646 (886)
Q Consensus       568 ~~~V~si~fs~dg~~la-tg~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd  646 (886)
                      ...+.+++|++..+.+. +-...+.|...+++......   .........-..+..+++....+++..+-...+.|.+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~---~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~  105 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCC---CEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf             98559999980899999999979979999935788876---148998489998546898642652899954899998576


Q ss_pred             CCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEE-CCCCEEEEECCHHHHHHCCCCEEEEEE--CCCCEEEEEEECCCCC
Q ss_conf             7886278881235874999998139999899981-899499994750344420473034453--2798699998189996
Q 002736          647 VSRSQVLTEMREHERRVWSIDFSSADPTLLASGS-DDGSVKLWSINQAILLLHLGVSIGTIK--TKANVCCVQFPLDSGR  723 (886)
Q Consensus       647 ~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs-~Dg~v~iwdl~~~~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~  723 (886)
                      +........+.........+...|..+.++.+.. ..+.|.-.++..        .....+-  .-..+..+++.+..+.
T Consensus       106 ~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--------s~~~~l~~~~~~~p~gl~iD~~~~~  177 (266)
T d1ijqa1         106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--------VDIYSLVTENIQWPNGITLDLLSGR  177 (266)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--------CCEEEEECSSCSCEEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCC--------CCEECCCCCCCCEEEEEEEECCCCE
T ss_conf             48953788872799883369998003948871269973026863688--------8344120045320169986133569


Q ss_pred             EEEEEECCCEEEEEECCCCCCCEEEEECCC--CCEEEEEECCCCEEEEEECCCCEEEEECCCC
Q ss_conf             899993899099996589983469991279--9867999649998999978994999947999
Q 002736          724 SLAFGSADHRIYYYDLRNSKIPLCTLIGHN--KTVSYVKFVDATTLVSASTDNTLKLWDLSMC  784 (886)
Q Consensus       724 ~l~~gs~dg~I~iwDl~~~~~~~~~~~~h~--~~V~~i~f~~~~~l~sgs~Dg~I~iwd~~~~  784 (886)
                      ++.+-...+.|...++..... ........  .....+++..+..+++-..++.|...+..++
T Consensus       178 lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         178 LYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEECCCCCEEEEEECCCCCE-EEEEECCCCCCCCEEEEEECCEEEEEECCCCEEEEEECCCC
T ss_conf             999528967999998999977-99993898556647999989999999899996999999899

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.94  E-value=0.025  Score=26.74  Aligned_cols=130  Identities=12%  Similarity=0.085  Sum_probs=68.6

Q ss_pred             EEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEEE-EEECCCEEEEEECCCCCC----------CEEEEECCC
Q ss_conf             999947503444204730344532798699998189996899-993899099996589983----------469991279
Q 002736          685 VKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLA-FGSADHRIYYYDLRNSKI----------PLCTLIGHN  753 (886)
Q Consensus       685 v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-~gs~dg~I~iwDl~~~~~----------~~~~~~~h~  753 (886)
                      +.+-|.+....    ......+........+.++|+ |++++ +|..+.++.++|+++...          .+..-....
T Consensus       254 V~VVD~~~~~~----~~v~~yIPVpKsPHGV~vSPD-GKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         254 VKVVDGRKEAS----SLFTRYIPIANNPHGCNMAPD-KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             EEEEECSGG------CSSEEEEEEESSCCCEEECTT-SSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             CEEECCCCCCC----CCEEEEEECCCCCCCEEECCC-CCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf             46615423678----520389865898773388999-9789993885895799982253566504688452179611357


Q ss_pred             CCEEEEEEC-CCCEEEEEECCCCEEEEECCCCC----CCCCCCCCEEEECCCCCEEEE-----EEECCCCEEEEEC
Q ss_conf             986799964-99989999789949999479997----665698813860678853499-----9913999999984
Q 002736          754 KTVSYVKFV-DATTLVSASTDNTLKLWDLSMCT----SRVIDTPLHSFTGHTNVKNFV-----GLSVWDGYVATGS  819 (886)
Q Consensus       754 ~~V~~i~f~-~~~~l~sgs~Dg~I~iwd~~~~~----~~~~~~~~~~~~~h~~~v~~v-----~~sp~~~~lasgs  819 (886)
                      -.-....|. .|....|---|..|.-|++...-    .......+..+.-|-++-...     ...|+|+|+++..
T Consensus       329 lgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEEECCCEEEEEECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             6766203389842999861231699973440556644666773113543345788774576786788887899803

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.034  Score=25.88  Aligned_cols=229  Identities=7%  Similarity=-0.069  Sum_probs=127.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCE----EEEEECCCCCCEEE
Q ss_conf             91999975864475665333348723789801699807999869996289919999878862----78881235874999
Q 002736          590 KKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWS  665 (886)
Q Consensus       590 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~----~~~~~~~h~~~V~~  665 (886)
                      ..|+..+++...      .  .........+..+.|++..+.+..+-..++.|...++....    ....+......+.+
T Consensus        10 ~~I~~~~l~~~~------~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1          10 HEVRKMTLDRSE------Y--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             SSEEEEETTSCC------C--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CEEEEEECCCCC------C--EEEECCCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCE
T ss_conf             718999899985------2--66417998559999980899999999979979999935788876148998489998546


Q ss_pred             EEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEE-CCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC
Q ss_conf             998139999899981899499994750344420473034453-2798699998189996899993-89909999658998
Q 002736          666 IDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIK-TKANVCCVQFPLDSGRSLAFGS-ADHRIYYYDLRNSK  743 (886)
Q Consensus       666 i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~~gs-~dg~I~iwDl~~~~  743 (886)
                      +++.+..+.+..+-...+.|.+.++..       ........ .......++++|..+.++.+.. ..+.|...++....
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g-------~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKG-------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS-------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             EEEEECCCEEEEEECCCCEEEEEECCC-------CEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCC
T ss_conf             898642652899954899998576489-------5378887279988336999800394887126997302686368883


Q ss_pred             CCEEEEECCCCCEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCC
Q ss_conf             3469991279986799964--99989999789949999479997665698813860678853499991399999998499
Q 002736          744 IPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSET  821 (886)
Q Consensus       744 ~~~~~~~~h~~~V~~i~f~--~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~d  821 (886)
                      . .......-.....+++.  .+.++++-...+.|...++.....    ..+............+++. .+.+..+-..+
T Consensus       155 ~-~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~----~~~~~~~~~~~~p~~lav~-~~~ly~td~~~  228 (266)
T d1ijqa1         155 I-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (266)
T ss_dssp             E-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             E-ECCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCE----EEEEECCCCCCCCEEEEEE-CCEEEEEECCC
T ss_conf             4-4120045320169986133569999528967999998999977----9999389855664799998-99999998999


Q ss_pred             CCEEEEECCCCCCCEEEC
Q ss_conf             929997139998610103
Q 002736          822 NEVFVYHKAFPMPALSFN  839 (886)
Q Consensus       822 g~i~iwd~~~~~~~~~~~  839 (886)
                      +.|+..++..+.....+.
T Consensus       229 ~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         229 EAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             TEEEEEETTTCCCCEEEE
T ss_pred             CEEEEEECCCCCCEEEEE
T ss_conf             969999998996159977

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.55  E-value=0.012  Score=28.79  Aligned_cols=42  Identities=12%  Similarity=-0.111  Sum_probs=21.9

Q ss_pred             CCCCEEEEEEE-CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             58962999851-7852344504999986868999999999999995101
Q 002736           53 AIDPFVHAIEW-GDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHS  100 (886)
Q Consensus        53 ~~~~~~~~~e~-~g~sL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lHs  100 (886)
                      ..+..+++|++ .|.++.+.....      .....++.++...+..+|+
T Consensus        81 ~~~~~~lv~~~l~G~~~~~~~~~~------~~~~~~~~~l~~~l~~lH~  123 (263)
T d1j7la_          81 HDGWSNLLMSEADGVLCSEEYEDE------QSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             ETTEEEEEEECCSSEEHHHHTTTC------SCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHC
T ss_conf             089649999860433435433440------2699999989999999855

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.05  E-value=0.051  Score=24.78  Aligned_cols=231  Identities=11%  Similarity=0.114  Sum_probs=133.5

Q ss_pred             EEEECCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCE
Q ss_conf             99807999869996289919999878862788812358749999981399998999818994999947503444204730
Q 002736          623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVS  702 (886)
Q Consensus       623 i~~~~~~~~~l~s~s~Dg~V~iWd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~  702 (886)
                      .-.+| ..+.||.-+ ..++.++|+++.+.++.+.- ...|.-..|.  +.+.|+-... ..|.-|++...      ..+
T Consensus        68 AIMhP-~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~------s~P  135 (327)
T d1utca2          68 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGE------SQP  135 (327)
T ss_dssp             EEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEES--SSSEEEEECS-SEEEEEESSSS------CCC
T ss_pred             HHCCC-CCCEEEEEC-CCEEEEEEHHHHHHHCEEEC-CCCCEEEEEC--CCCEEEEECC-CCEEEECCCCC------CCC
T ss_conf             53088-875799962-88689984468221115876-8885799944--7988999918-81699735699------985


Q ss_pred             EEEEEC-----CCCEEEEEEECCCCCEEEE-EE------CCCEEEEEECCCCCCCEEEEECCCCCEEEEEEC----CCCE
Q ss_conf             344532-----7986999981899968999-93------899099996589983469991279986799964----9998
Q 002736          703 IGTIKT-----KANVCCVQFPLDSGRSLAF-GS------ADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV----DATT  766 (886)
Q Consensus       703 ~~~~~~-----~~~v~~i~~sp~~~~~l~~-gs------~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~----~~~~  766 (886)
                      ...+.-     ...|-.-..+++ .++++. |-      -.|.+.+|......  -..+.||-.....+...    ....
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~-~kW~~l~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~l  212 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTL  212 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTT-SCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEEEEEEECCTTCSSCEEE
T ss_pred             HHHHHHCCCCCCCEEEEEEECCC-CCEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCCCEEEEEEEEECCCCCCCCEE
T ss_conf             26623210124863899898999-98899995713788305888899802286--7523203465688870799887309


Q ss_pred             EEEEE---CCCCEEEEECCCCCCC--CC-CCCCEEEECC---CCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEE
Q ss_conf             99997---8994999947999766--56-9881386067---88534999913999999984999299971399986101
Q 002736          767 LVSAS---TDNTLKLWDLSMCTSR--VI-DTPLHSFTGH---TNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALS  837 (886)
Q Consensus       767 l~sgs---~Dg~I~iwd~~~~~~~--~~-~~~~~~~~~h---~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~  837 (886)
                      ++-+.   ..+.+.+.++......  .. .+.+..+...   ..---++..++.-+.+..-+.-|.+++||+.++..+..
T Consensus       213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEE
T ss_conf             99998789874799998688755788875326887779634688477999643379999996675899997566628999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf             035799999988556679959999990699959999847997999
Q 002736          838 FNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKI  882 (886)
Q Consensus       838 ~~~~~~~~~~~~~~~~~~~~V~~v~~~~~~~~~lvs~~~dg~I~i  882 (886)
                      -+.....             |...|-..+.. -+++.+.+|.+--
T Consensus       293 nRIs~~~-------------iF~~a~~~~~~-Gi~~VNr~GqVl~  323 (327)
T d1utca2         293 NRISGET-------------IFVTAPHEATA-GIIGVNRKGQVLS  323 (327)
T ss_dssp             EECCSSC-------------EEEEEEETTTT-EEEEEETTSEEEE
T ss_pred             EECCCCC-------------EEEECCCCCCC-EEEEECCCCEEEE
T ss_conf             4047884-------------48962678886-0899878976999

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.55  E-value=0.068  Score=23.97  Aligned_cols=97  Identities=14%  Similarity=0.045  Sum_probs=54.0

Q ss_pred             EEEEEECCCEEE--EEECCCCCCCCCCCEEEEEECCCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf             478641374488--992057335899988999996899989999689-91999975864475665333348723789801
Q 002736          545 CKYLSFSKLRVK--ADLNQGDLLNSSNLVCSLSFDRDGELFAAAGVN-KKIKVFECDAIINENRDIHYPVVEMASRSKLS  621 (886)
Q Consensus       545 ~~~~~~~~~~~~--~~l~~~~l~~h~~~V~si~fs~dg~~latg~~d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~  621 (886)
                      +.+||..+.+-.  ..+.    ..+.....+..+.+|+.+++.|+.+ ..+.+||..+..-.      +...+.....-.
T Consensus        54 ~~~yd~~t~~w~~~~~~~----~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~------~~~~~~~~r~~~  123 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTV----TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI------PGPDMQVARGYQ  123 (387)
T ss_dssp             EEEECTTTCCBCCCEEEE----CSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE------ECCCCSSCCSSC
T ss_pred             EEEEECCCCCEEECCCCC----CCCCCCEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCC------CCCCCCCCCCCC
T ss_conf             999988889686667789----8744525689994688689863688862167567557442------156566421013


Q ss_pred             EEEEECCCCCEEEEECCC------CCEEEEECCCCEE
Q ss_conf             699807999869996289------9199998788627
Q 002736          622 SICWNSYIKSQIASSNFE------GVVQVWDVSRSQV  652 (886)
Q Consensus       622 ~i~~~~~~~~~l~s~s~D------g~V~iWd~~~~~~  652 (886)
                      +.+..+ ++.+++.++.+      ..+.+||..+.+-
T Consensus       124 ~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         124 SSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CEEEEC-CCCEEEECCCCCCCCCCCEEEEECCCCCCE
T ss_conf             035531-782665213663335432056634888955

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.46  E-value=0.025  Score=26.77  Aligned_cols=29  Identities=7%  Similarity=0.054  Sum_probs=19.6

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCC
Q ss_conf             47042256876045324885345307766
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASC  129 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~  129 (886)
                      .|+||+|+.|.|++++.+...-++||+.+
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~  211 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFA  211 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTC
T ss_pred             CCCCCCCCCHHHHHCCCCCCEEEECCCCC
T ss_conf             50333786365640204541267422212

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.16  Score=21.57  Aligned_cols=182  Identities=10%  Similarity=0.041  Sum_probs=83.6

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCCC-----CCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf             889999968999899996899199997586447-----566533334872378980169980799986999628991999
Q 002736          570 LVCSLSFDRDGELFAAAGVNKKIKVFECDAIIN-----ENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQV  644 (886)
Q Consensus       570 ~V~si~fs~dg~~latg~~dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~Dg~V~i  644 (886)
                      ...-++.+....++++|+-+ .++|........     .......+..   .-..|..++|+.   ..++.. .++.+..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~---d~l~v~-~~~~l~~  109 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHG---DQVLVS-TRNALYS  109 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEET---TEEEEE-ESSEEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-EEEEEEHHHHHHHHHCCCCCCCCEECC---CCCCEEEEEEEC---CEEEEE-ECCCEEE
T ss_conf             44268995777889998899-779999899787865567888623416---899868998618---989999-5897899


Q ss_pred             EECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCE
Q ss_conf             98788627888123587499999813999989998189949999475034442047303445327986999981899968
Q 002736          645 WDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS  724 (886)
Q Consensus       645 Wd~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  724 (886)
                      ++..+-........-..++.++.++|   ..++....++.+.++++........ ...+..+...+.+.|++|++. +..
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~v~ws~k-gkq  184 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQL-AQNVTSFDVTNSQLAVLLKDR-SFQ  184 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEE-EESEEEEEECSSEEEEEETTS-CEE
T ss_pred             EEEECCCCCCCCCCCCCCCCCEECCC---CEEEEEECCCCEEEEEECCCCCCCC-CCCCCEEEECCCCEEEEEECC-CEE
T ss_conf             98510014544655455611102188---6069996589778999415864444-477523873389269999689-689


Q ss_pred             EEEEECCCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCC
Q ss_conf             99993899099996589983469991279986799964999
Q 002736          725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDAT  765 (886)
Q Consensus       725 l~~gs~dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~  765 (886)
                      ++++..+..-.--++..... +.........|.+|.|....
T Consensus       185 ~v~~~g~~~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         185 SFAWRNGEMEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQ  224 (381)
T ss_dssp             EEEEETTEEEEEEEECCCHH-HHTSCTTTSEEEEEEESSSS
T ss_pred             EEEECCCCEEECCCCCCCCC-CCCCCCCCCCEEEEEEECCC
T ss_conf             99818982036567788201-57886778616689995175

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=91.66  E-value=0.039  Score=25.50  Aligned_cols=28  Identities=7%  Similarity=0.063  Sum_probs=17.0

Q ss_pred             CEEECCCCCCCEEECCCCCEEEEECCCC
Q ss_conf             7042256876045324885345307766
Q 002736          102 GIVVHNVRPSCFVMSSFNHVSFIESASC  129 (886)
Q Consensus       102 giiHrDlkP~Nill~~~~~vk~~dfg~~  129 (886)
                      .++|+|+.|.|||+.....+-++||+.+
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~  203 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRL  203 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTC
T ss_pred             EEEECCCCCCCEEEECCCEEEEEECHHC
T ss_conf             6786788876357737965899985332

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.14  Score=22.03  Aligned_cols=27  Identities=4%  Similarity=0.033  Sum_probs=20.9

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCC
Q ss_conf             47042256876045324885345307766
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASC  129 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~  129 (886)
                      .++||+|+.|.|||++. + ..++||+-|
T Consensus       192 ~~liHgDlh~~NvL~~~-~-~~~IDFdd~  218 (325)
T d1zyla1         192 VLRLHGDCHAGNILWRD-G-PMFVDLDDA  218 (325)
T ss_dssp             CEECCSSCSGGGEEESS-S-EEECCCTTC
T ss_pred             CEEECCCCCCCCEEEEC-C-CEEEECHHC
T ss_conf             12024788804287838-9-358865201

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=90.96  E-value=0.22  Score=20.73  Aligned_cols=28  Identities=7%  Similarity=0.197  Sum_probs=21.6

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEEECCCC
Q ss_conf             47042256876045324885345307766
Q 002736          101 QGIVVHNVRPSCFVMSSFNHVSFIESASC  129 (886)
Q Consensus       101 ~giiHrDlkP~Nill~~~~~vk~~dfg~~  129 (886)
                      ..++|+|++|.|||+++. .+++||+-.+
T Consensus       223 ~~LiHGDl~~gNIlv~~~-~~~vID~E~a  250 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEH-ETKVIDPEFA  250 (392)
T ss_dssp             CEEECSCCCGGGEEECSS-CEEECCCTTC
T ss_pred             CCEECCCCCCCCEEECCC-CEEEECHHHC
T ss_conf             600335776784667599-3089522652

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.78  E-value=0.23  Score=20.62  Aligned_cols=83  Identities=16%  Similarity=0.086  Sum_probs=48.8

Q ss_pred             CCEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCC-CEEEEEEE
Q ss_conf             99099996589983469991279986799964999899997899499994799976656988138606788-53499991
Q 002736          731 DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN-VKNFVGLS  809 (886)
Q Consensus       731 dg~I~iwDl~~~~~~~~~~~~h~~~V~~i~f~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s  809 (886)
                      .|.+..+|+.+++.......+.. .........+.+++.|+.|+.++.+|.++++      .+-++.-... .-.-+.+.
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~-~~~g~l~TagglVf~G~~dg~l~A~Da~tGe------~lW~~~l~~~~~a~P~ty~  515 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGK------ELWNFKMPSGGIGSPMTYS  515 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCC------EEEEEECSSCCCSCCEEEE
T ss_pred             CCCEEEECCCCCCEEEECCCCCC-CCCCEEEECCCEEEEECCCCEEEEEECCCCC------EEEEEECCCCCEECCEEEE
T ss_conf             56178853677846427678999-8756059669979997789969999999986------8789989999651564898


Q ss_pred             CCCC-EEEEECC
Q ss_conf             3999-9999849
Q 002736          810 VWDG-YVATGSE  820 (886)
Q Consensus       810 p~~~-~lasgs~  820 (886)
                      .+|+ ||+....
T Consensus       516 ~dGkqYi~v~~g  527 (571)
T d2ad6a1         516 FKGKQYIGSMYG  527 (571)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEEC
T ss_conf             899999999906

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.43  E-value=0.25  Score=20.43  Aligned_cols=63  Identities=16%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CCEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCC
Q ss_conf             9499994799976656988138606788534999913999999984999299971399986101035799
Q 002736          774 NTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHA  843 (886)
Q Consensus       774 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~  843 (886)
                      |.|..||+.+++.      +-.+. ...+...-.++..+.++..|+.|+.++.+|..+++.+.++.....
T Consensus       438 G~l~A~D~~tGk~------~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~  500 (560)
T d1kv9a2         438 GALLAWDPVKQKA------AWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG  500 (560)
T ss_dssp             EEEEEEETTTTEE------EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCEEEEECCCCEE------EEECC-CCCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCC
T ss_conf             6468870778837------31025-788887740598799899977898199999999858279989999

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.22  E-value=0.31  Score=19.83  Aligned_cols=83  Identities=8%  Similarity=0.071  Sum_probs=47.1

Q ss_pred             CEEEEEECCCCCCCEEEEECCCCCEE-EEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEEEECCCCCE-EEEEEE
Q ss_conf             90999965899834699912799867-9996499989999789949999479997665698813860678853-499991
Q 002736          732 HRIYYYDLRNSKIPLCTLIGHNKTVS-YVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVK-NFVGLS  809 (886)
Q Consensus       732 g~I~iwDl~~~~~~~~~~~~h~~~V~-~i~f~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~v-~~v~~s  809 (886)
                      |.+..||+.+++. +........... .+.- .+.+++.|+.||.++.+|..+++      .+-++....... .-+.+.
T Consensus       438 G~l~A~D~~tGk~-~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe------~LW~~~l~~~~~~~P~ty~  509 (560)
T d1kv9a2         438 GALLAWDPVKQKA-AWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGE------ALWQFEAQSGIVAAPMTFE  509 (560)
T ss_dssp             EEEEEEETTTTEE-EEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCC------EEEEEECSSCCCSCCEEEE
T ss_pred             CCEEEEECCCCEE-EEECCCCCCCCCCEEEE-CCCEEEEECCCCCEEEEECCCCC------EEEEEECCCCCCCCCEEEE
T ss_conf             6468870778837-31025788887740598-79989997789819999999985------8279989999551677999


Q ss_pred             CCCC-EEEEECCCC
Q ss_conf             3999-999984999
Q 002736          810 VWDG-YVATGSETN  822 (886)
Q Consensus       810 p~~~-~lasgs~dg  822 (886)
                      .+|+ ||+..+..|
T Consensus       510 ~dGkqyv~v~aG~g  523 (560)
T d1kv9a2         510 LAGRQYVAIMAGWG  523 (560)
T ss_dssp             ETTEEEEEEEECCC
T ss_pred             ECCEEEEEEEECCC
T ss_conf             89999999991778

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.24  E-value=0.41  Score=19.03  Aligned_cols=36  Identities=17%  Similarity=0.152  Sum_probs=29.8

Q ss_pred             EECCCCEEEEECCCCCEEEEECCCCCCCEEECCCCC
Q ss_conf             913999999984999299971399986101035799
Q 002736          808 LSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHA  843 (886)
Q Consensus       808 ~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~  843 (886)
                      ++..+.++.+|+.|+.++.+|..+++.+.++.+...
T Consensus       484 lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~  519 (573)
T d1kb0a2         484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (573)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             EEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf             798699899977999199999998868579989899

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.09  E-value=0.42  Score=18.98  Aligned_cols=10  Identities=0%  Similarity=0.394  Sum_probs=4.0

Q ss_pred             CCCEEEEECC
Q ss_conf             9949999479
Q 002736          773 DNTLKLWDLS  782 (886)
Q Consensus       773 Dg~I~iwd~~  782 (886)
                      +++..+||..
T Consensus       253 ~n~f~vydr~  262 (353)
T d1h6la_         253 NSSYAIYERQ  262 (353)
T ss_dssp             GTEEEEEESS
T ss_pred             CCEEEEEECC
T ss_conf             9769999567

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.39  E-value=0.62  Score=17.89  Aligned_cols=35  Identities=9%  Similarity=-0.031  Sum_probs=22.6

Q ss_pred             EECCCCEEEEECCCCCEEEEECCCCCCCEEECCCC
Q ss_conf             91399999998499929997139998610103579
Q 002736          808 LSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNH  842 (886)
Q Consensus       808 ~sp~~~~lasgs~dg~i~iwd~~~~~~~~~~~~~~  842 (886)
                      ++..+.++..|+.||.++.+|..+++.+.++....
T Consensus       480 lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             EEECCCEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf             68669979997899959999999984836998999

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.17  E-value=0.81  Score=17.16  Aligned_cols=246  Identities=16%  Similarity=0.086  Sum_probs=117.9

Q ss_pred             CEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCC-----
Q ss_conf             889999968999899996-----8991999975864475665333348723789801699807999869996289-----
Q 002736          570 LVCSLSFDRDGELFAAAG-----VNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE-----  639 (886)
Q Consensus       570 ~V~si~fs~dg~~latg~-----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~I~~i~~~~~~~~~l~s~s~D-----  639 (886)
                      .+..++++||++++|.+-     .--.|+++|+.++....    ..+    .......+.|.+ ++..|+-...+     
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~----~~i----~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP----DVL----ERVKFSCMAWTH-DGKGMFYNAYPQQDGK  196 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE----EEE----EEECSCCEEECT-TSSEEEEEECCCCSSC
T ss_pred             EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECC----CCC----CCCCCCCEEECC-CCCEEEEEEECCCCCC
T ss_conf             3342585378987999955666721046774167640314----422----243236417857-9989999976266676


Q ss_pred             -----------CCEEEEECCCCE--EEEEECCCC--CCEEEEEECCCCCCEEEEEE---CCCCEEEE--ECCHHHHHHCC
Q ss_conf             -----------919999878862--788812358--74999998139999899981---89949999--47503444204
Q 002736          640 -----------GVVQVWDVSRSQ--VLTEMREHE--RRVWSIDFSSADPTLLASGS---DDGSVKLW--SINQAILLLHL  699 (886)
Q Consensus       640 -----------g~V~iWd~~~~~--~~~~~~~h~--~~V~~i~~sp~~~~~l~sgs---~Dg~v~iw--dl~~~~~~~~~  699 (886)
                                 ..|..|.+.+..  ....+....  ..+..+..++ ++.+++...   .+....+|  ++.........
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~  275 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC-CCCEEEEEEECCCCCCEEEEEEECCCCCCCCCC
T ss_conf             5443334578633899988988653100223235772577530268-762456876436776479999517776455663


Q ss_pred             -CCEEEEEEC-CCCEEEEEEECCCCCEEEEEE---CCCEEEEEECCCCCC-CEEEEE-CCCCCEEEEEEC-CCCEE-EEE
Q ss_conf             -730344532-798699998189996899993---899099996589983-469991-279986799964-99989-999
Q 002736          700 -GVSIGTIKT-KANVCCVQFPLDSGRSLAFGS---ADHRIYYYDLRNSKI-PLCTLI-GHNKTVSYVKFV-DATTL-VSA  770 (886)
Q Consensus       700 -~~~~~~~~~-~~~v~~i~~sp~~~~~l~~gs---~dg~I~iwDl~~~~~-~~~~~~-~h~~~V~~i~f~-~~~~l-~sg  770 (886)
                       ......+.. .....-+.. .. +.+++...   .++.+...++.+... ....+. .+...+..-.+. .+.+| ++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~  353 (430)
T d1qfma1         276 ILKWVKLIDNFEGEYDYVTN-EG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (430)
T ss_dssp             SCCCEEEECSSSSCEEEEEE-ET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             CCCEEEEECCCCCCEEEEEC-CC-CEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEE
T ss_conf             10125830465562687713-77-30232457656554158734778765541589513675255567897799999999


Q ss_pred             ECCC--CEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC--EEEEECC--CCCEEEEECCCCC
Q ss_conf             7899--499994799976656988138606788534999913999--9999849--9929997139998
Q 002736          771 STDN--TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSE--TNEVFVYHKAFPM  833 (886)
Q Consensus       771 s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~lasgs~--dg~i~iwd~~~~~  833 (886)
                      ..++  .|++++...+..      ........+.+..+...+++.  ++...|.  -.+++-||+.+++
T Consensus       354 ~~~~~~~l~v~~~~~~~~------~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         354 LHDVKNTLQLHDLATGAL------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EETTEEEEEEEETTTCCE------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCCEEEEEEEECCCCCE------EEECCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCC
T ss_conf             918870899998999958------885488871686414898899899998189998769999999998