Citrus Sinensis ID: 002780

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880--

MAEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDVIDEYTLMVAKLPHGRGLVGVLRRISRFIKKLKLRRGVATEIQDIKSALADIKRRGESYRFRSIDEPSSSGTRNVIPHDSRVRSFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQRSIDDGALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSLSPEYVEQIC

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEEcccccHHEEEEEccEEEccccccccccccccHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHHHccccccccEEEEEcccHHHHHHccccccccEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHccccccccEEccccHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEcHHHHHHHHHHccccccEEEEccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccccccccccccEEEEEEEcccccccccccccccccccccEEcccccccccccccccccccEEEEcccccccccHHHHccccccEEEccccccccccccHHHHHHcccccccccccccccccEEEccHHHHHHHHccccccEEEEEEcccccHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEEccccccHHHHcccccccEEEEEccccccEEEEEccccccccEEEEcccccccEEEEcccccccccEEEEEcccccccccccccccccccEEEEEccHHHHHHHHHccccccHHccccEEEEEEEEccEEcccccccccccccHHHHccc

cHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHcccHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccccccEEEEEEccHHHHHHHccccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHcccHHcHHHEEEEEEcccccEEcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEHHHHHHHHHHHHHHHccEEEEEccccccccccEEEEEEEEccccccccccccccEEEEEEEcccccccHHHHHHHHHccEEEEEEccccccHHccHHHHHHHHHHHEcccccccccccHHHHHHHcccEEcccccccHHccHHHHHHHHHHEEEEcccccccccccccccccEEcccccccHHHHHHccEEEccHHHHHHHHHHHHHHHccEEcccccHHHHHHHHHHcccccEEEEEEccccccccHHHcccccHHHHHEEEccccHHccHHHccccccEEEEEEEcccccccHHHHHcccccEEEEEEccccccEEEEccccccccEEEEEcccccccEEEEcccccccccEEEEcccHHHcccccHHHHHHHccEEEEccccHHHHHcccccccccEEccccEEEEEEEccccccccccHHHHHccHHHHHHHc

MAEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIEDVIDEYTLMVAKLPHGRGLVGVLRRISRFIKKLKLRRGVATEIQDIKSALADIKRRgesyrfrsidepsssgtrnviphdsrvrsffveddevvgIESIKDKLIDLMEfhrvtnepapveihdMEEMELITALRDhlkdksymvVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCkssssvhvheletlppneaRKLFCRkvlgpssggccpselKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLgsilgsdphlkdCNRVLsegyyalphHLKSCLLSFGLFQESCKVNCARLIRLWIAEGfvqyskrptseQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEelgfsrvmngedlsrssktrritVQRSIDDGALESIKESKVRSVFLFnvdklpdsfmnasianfklikvldledapvdylpegvgnlfNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRggfgsltnlqklSIIEADSQVLKELMKLRQLRMlsirpqngngkDLCALITNLENLETLTVEMTskeemldlqslssppqylqRLHLTGNMKKLPDWIFKLKNLIRLgldlsglteepIRVLQTLPNLLELRFTGaynyelfhfeagwfpKLQKLLLWEFKAVKSVIIekgampdirelwigpcpllmeipiGIEHLKNLKLLVFAGMVKQVYYMTkdenwgkvtenIPDVLVTFMEAGQLFHYRKDILSSLSPEYVEQIC

MAEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEelegggeesvrtwVKQLRDEAYRIEDVIDEYTLMVAklphgrglvgvLRRISRFikklklrrgvateiqdiksaladikrrgesyrfrsidepsssgtrnviphdsrvrsffveddevvgIESIKDKLIDLMEFHRVTNEpapveihdMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRlgsilgsdphlKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRkteelgfsrvmngedlsrssktrritvqrsiddgalesikeskvrsVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFgsltnlqklsIIEADSQVLKELMKLRQLRMlsirpqngngkDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIiekgampdiRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMtkdenwgkvtENIPDVLVTFMEAGQLFHYRKDIlsslspeyveqic

MAEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVeelegggeeSVRTWVKQLRDEAYRIEDVIDEYTLMVAKLPHGRGLVGVLRRISRFIKKLKLRRGVATEIQDIKSALADIKRRGESYRFRSIDEPSSSGTRNVIPHDSRVRSFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQRSIDDGALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALItnlenletltVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSLSPEYVEQIC

****AVNFAIETLGPLLVEKIKLWGGVRKEVQSI*****************************SVRTWVKQLRDEAYRIEDVIDEYTLMVAKLPHGRGLVGVLRRISRFIKKLKLRRGVATEIQDIKSALADI****************************RVRSFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVH***********************************QDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRV*******************************SKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVE******************YLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSS**********

MAEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARA*******GGEESVRTWVKQLRDEAYRIEDVIDEYTLMVAKL***RGLVGVLRRISRFIKKLKLRRGVATEIQDIKSALA************************VIPHDSRVRSFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILG*DPHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQRSIDD*AL**IKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVY*********KVTENIPDVLVTFMEAGQLFHYRKDILSSLSPEYVE***

MAEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAA***********VRTWVKQLRDEAYRIEDVIDEYTLMVAKLPHGRGLVGVLRRISRFIKKLKLRRGVATEIQDIKSALADIKRRGESYRFRSI********RNVIPHDSRVRSFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTRRITVQRSIDDGALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLSIRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGMVKQVYYMTKDENWGKVTENIPDVLVTFMEAGQLFHYRKDILSSLSPEYVEQIC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		882	2.2.26 [Sep-21-2011]
Q39214		926	Disease resistance protei	yes	no	0.705	0.671	0.319	3e-86
Q8W4J9		908	Disease resistance protei	no	no	0.928	0.901	0.275	2e-69
P59584		910	Disease resistance protei	no	no	0.925	0.896	0.268	2e-67
Q9FJB5		901	Disease resistance RPP8-l	no	no	0.914	0.895	0.267	8e-66
Q9FJK8		908	Probable disease resistan	no	no	0.926	0.899	0.271	7e-65
Q8W3K3		910	Putative disease resistan	no	no	0.929	0.901	0.255	3e-59
Q6L3Z7		1317	Putative late blight resi	N/A	no	0.845	0.566	0.282	6e-57
A7XGN8		910	Disease susceptibility pr	no	no	0.917	0.889	0.266	7e-57
Q8W474		907	Probable disease resistan	no	no	0.928	0.902	0.265	1e-56
Q6L400		1284	Putative late blight resi	N/A	no	0.638	0.438	0.310	2e-56

>sp\|Q39214\|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1	Back alignment and function desciption

 Score =  320 bits (821), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 207/648 (31%), Positives = 362/648 (55%), Gaps = 26/648 (4%)

Query: 188 EFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKK 247
           EF++  +   P E++ +   EL+  L ++L+ K Y+VV DDVW    W ++  AL D   
Sbjct: 247 EFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDGIY 306

Query: 248 CSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKEL 307
            SR+++TTR MNVA +     S   HE+E L  +EA  LF  K    S   C    L+ +
Sbjct: 307 GSRVMMTTRDMNVASFPYGIGSTK-HEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPI 365

Query: 308 SQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGY 367
           ++ ++ +C GLPLAI ++G ++S+K +  SEWKK++  L   L ++  LK    ++   +
Sbjct: 366 ARKLVERCQGLPLAIASLGSMMSTK-KFESEWKKVYSTLNWELNNNHELKIVRSIMFLSF 424

Query: 368 YALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDR 427
             LP+ LK C L   LF  + ++   RLIR+W+A+ FV+  +   +E+VA+ YLNEL+ R
Sbjct: 425 NDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYR 484

Query: 428 SLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMN----GEDLSRSSK---TRR 480
           +++QV   +  GR +  ++HD++ +I +  ++   F  V N    G+D + + +   +R 
Sbjct: 485 NMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRH 544

Query: 481 ITVQRSIDDGALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLP 540
           + +Q+ +     +SI+ + + S+ + +  K     +     +  L++ LDLED+ +  LP
Sbjct: 545 LCIQKEMTP---DSIRATNLHSLLVCSSAKHKMELL----PSLNLLRALDLEDSSISKLP 597

Query: 541 EGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYLMV 600
           + +  +FNL YL+L  T+VK +P +   L++LETLN K++ + ELP+ +  LKKLRYL+ 
Sbjct: 598 DCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYLIT 657

Query: 601 YQY---HYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRMLS- 656
           ++    H ++ + +     V K+      L +LQ +    A+ +++K L  + QL  +S 
Sbjct: 658 FRRNEGHDSNWNYVLGTRVVPKI----WQLKDLQVMDCFNAEDELIKNLGCMTQLTRISL 713

Query: 657 IRPQNGNGKDLCALITNLENLETLTVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKKLP 716
           +  +  +G+DLC  +  ++ +  L++    +EE L++  L +    +++L L G ++++P
Sbjct: 714 VMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATAS-IEKLFLAGKLERVP 772

Query: 717 DWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQKL 776
            W   L+NL  LGL  S L E  I  +QTLP L+ L F  AY      F  G F  L+ L
Sbjct: 773 SWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQG-FQNLKIL 831

Query: 777 LLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLL 824
            + + K +  V+IE GAM ++++L++  C  L  +P GIE+L NL+ L
Sbjct: 832 EIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQEL 879

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8W4J9\|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2	Back alignment and function description

>sp\|P59584\|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1	Back alignment and function description

>sp\|Q9FJB5\|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1	Back alignment and function description

>sp\|Q9FJK8\|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1	Back alignment and function description

>sp\|Q8W3K3\|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1	Back alignment and function description

>sp\|Q6L3Z7\|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1	Back alignment and function description

>sp\|A7XGN8\|LOV1B_ARATH Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1	Back alignment and function description

>sp\|Q8W474\|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4	Back alignment and function description

>sp\|Q6L400\|R1B16_SOLDE Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		882
224122320		926	cc-nbs-lrr resistance protein [Populus t	0.914	0.871	0.405	1e-178
255582947		935	Disease resistance protein RPM1, putativ	0.969	0.914	0.400	1e-174
356515316		944	PREDICTED: disease resistance protein RP	0.933	0.871	0.395	1e-174
147771834		891	hypothetical protein VITISV_025806 [Viti	0.948	0.939	0.423	1e-172
356515318		943	PREDICTED: disease resistance protein RP	0.933	0.872	0.396	1e-172
356515314		926	PREDICTED: disease resistance protein RP	0.955	0.910	0.375	1e-162
147808016		898	hypothetical protein VITISV_018440 [Viti	0.756	0.742	0.463	1e-157
225465431		919	PREDICTED: disease resistance protein RP	0.752	0.722	0.472	1e-156
359480122		934	PREDICTED: disease resistance protein RP	0.761	0.719	0.459	1e-156
224131516		900	nbs-lrr resistance protein [Populus tric	0.917	0.898	0.395	1e-156

>gi\|224122320\|ref\|XP_002330594.1\| cc-nbs-lrr resistance protein [Populus trichocarpa] gi\|222872152\|gb\|EEF09283.1\| cc-nbs-lrr resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 365/900 (40%), Positives = 529/900 (58%), Gaps = 93/900 (10%)

Query: 1   MAEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGG 60
           MAE+AV+  I+ L PLL + ++L  GV  EV  IK ++E++R+FLKDA+++A  E    G
Sbjct: 1   MAESAVSLVIDKLAPLLAQGVQLLKGVYNEVVDIKDDLEAIRAFLKDANSKAEKE----G 56

Query: 61  GEESVRTWVKQLRDEAYRIEDVIDEYTLM-VAKLPHGRGLVGVLRRISRFIKKLKLRRGV 119
             ESV+ WVKQ R+ AY+IEDVIDEY ++ VA+    R   G L ++S  ++KL LR  +
Sbjct: 57  ASESVKVWVKQAREVAYQIEDVIDEYNMLHVAQHRDRRVFTGFLTKVSSLVRKLPLRHKI 116

Query: 120 ATEIQDIKSALADIKRRGESYRFRSIDEPSSSGTRNVIPHDSRVRSFFVEDDEV------ 173
           A+EI D++  L  IK R E +RF S ++    G+ N++ HD R  S F+ED E+      
Sbjct: 117 ASEIHDVRRTLQRIKDRSEGFRFASSEQ---GGSNNIVLHDPRSGSLFIEDSELVGIEST 173

Query: 174 -------------------------VGIESIKDKLID----------------------- 185
                                    VG  ++  K+ D                       
Sbjct: 174 KDELISLLVSGECQRTVIAVVGMGGVGKTTLAKKVYDSYVVKQHFQCHAWITVSQSYDRV 233

Query: 186 ------LMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVE 239
                 L + +    EP P  I  M+++ LI  LR +L+ + Y+VVFDDVW+I FWGDVE
Sbjct: 234 ELLRSTLKKLYEAKKEPFPEAIVTMDDLSLIDELRKYLQQERYLVVFDDVWEIRFWGDVE 293

Query: 240 HALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGC 299
           HAL+DN K S+I+ TTR+ +VA +C+ SS VHV+++++LP  EA +LFC+K       G 
Sbjct: 294 HALVDNNKGSKILATTRNEDVANFCRRSSLVHVYQMKSLPQREAWELFCKKAFKFDFEGN 353

Query: 300 CPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDC 359
           CP +L+ELSQDI+ +CGGLPLAIVAVGGLL++K RV+ EW+KL + L S + SDPH+++ 
Sbjct: 354 CPKDLEELSQDIVRRCGGLPLAIVAVGGLLATKERVIPEWQKLVNSLDSTMASDPHVENV 413

Query: 360 NRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEE 419
            ++LS  ++ LP++LK+C LSFG+  E   +   R+IRLW+A+GFVQ  +  T E+ AEE
Sbjct: 414 TKILSLSFHDLPYYLKACFLSFGMLPEDFSIKRTRIIRLWVAQGFVQEKRGLTLEEAAEE 473

Query: 420 YLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMNGEDLSRSSKTR 479
            LN LI RSLVQV +  + G    C+VHDL+  +I+ ++EEL F  V        SS   
Sbjct: 474 CLNGLIRRSLVQVDEASMKGIPTTCRVHDLVRDVILSRSEELSFGHVS-----WNSSALE 528

Query: 480 RITVQRSIDDGALESIK---ESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPV 536
            I    SI  G  ++ K    S+ RSV +F   KL    ++A    +KL+  LD E  P+
Sbjct: 529 GIARHMSISKGGSDNPKGSTRSQTRSVMVFCGAKLQKPIIDAIFEKYKLLTTLDFEKCPI 588

Query: 537 DYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLR 596
           D +P+ +GNL +L YLSLR+T V  +P SIG L +LE L++ ++LV  LPVE+    KLR
Sbjct: 589 DEIPKELGNLLHLKYLSLRDTLVSNLPKSIGKLQNLEFLDLSDSLVERLPVEVNRFPKLR 648

Query: 597 YLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEA----DSQVLKELMKLRQL 652
           YL+             ++     VRG  G L  LQ L ++ A    + +++ E+  L+QL
Sbjct: 649 YLL----------GEPKQGYGFVVRGSLGQLELLQTLCLVNAGFHHEWKLINEIGMLKQL 698

Query: 653 RMLSI-RPQNGNGKDLCALITNLENLETLTVEMTSKE-EMLDLQSLSSPPQYLQRLHLTG 710
           R L I   +  NG+DLC  + N+ +L +L V        +LDLQ++SSPP +LQ L L G
Sbjct: 699 RKLGIMNMKTENGRDLCVALENMPHLRSLWVASEGYGVAILDLQAMSSPPLHLQSLILRG 758

Query: 711 NMKKLPDWIFKLKNLIRLGLDLSGLTE-EPIRVLQTLPNLLELRFTGAYNYELFHFEAGW 769
            +++LP+WI +L +L +L L  + L + + I+VLQ LPNL  LRF   YN +  HFE G 
Sbjct: 759 KLERLPEWISRLHHLAKLRLTDTMLMDGDSIKVLQALPNLRFLRFLRGYNGQRMHFEGGG 818

Query: 770 FPKLQKLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLLVFAGM 829
           F KL+ L L     + ++II++GA+P + +L IG C  L E+P GI+HLKN+K L  A M
Sbjct: 819 FQKLKSLRLAGLTKLNTMIIDQGAIPLLEKLEIGFCQSLKEVPSGIQHLKNIKQLSLAKM 878

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255582947\|ref\|XP_002532244.1\| Disease resistance protein RPM1, putative [Ricinus communis] gi\|223528062\|gb\|EEF30138.1\| Disease resistance protein RPM1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356515316\|ref\|XP_003526347.1\| PREDICTED: disease resistance protein RPM1-like [Glycine max]	Back alignment and taxonomy information

>gi\|147771834\|emb\|CAN60255.1\| hypothetical protein VITISV_025806 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356515318\|ref\|XP_003526348.1\| PREDICTED: disease resistance protein RPM1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356515314\|ref\|XP_003526346.1\| PREDICTED: disease resistance protein RPM1-like [Glycine max]	Back alignment and taxonomy information

>gi\|147808016\|emb\|CAN62150.1\| hypothetical protein VITISV_018440 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225465431\|ref\|XP_002265419.1\| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359480122\|ref\|XP_002265617.2\| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera] gi\|147771833\|emb\|CAN60254.1\| hypothetical protein VITISV_025805 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224131516\|ref\|XP_002328559.1\| nbs-lrr resistance protein [Populus trichocarpa] gi\|222838274\|gb\|EEE76639.1\| nbs-lrr resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		882
TAIR\|locus:2077572		926	RPM1 "RESISTANCE TO P. SYRINGA	0.707	0.673	0.316	1.4e-97
TAIR\|locus:2176486		908	RPP8 "RECOGNITION OF PERONOSPO	0.763	0.741	0.285	3.7e-73
TAIR\|locus:2152536		908	AT5G48620 [Arabidopsis thalian	0.727	0.707	0.279	8.1e-67
TAIR\|locus:2169523		901	AT5G35450 [Arabidopsis thalian	0.724	0.709	0.275	7.3e-66
TAIR\|locus:504956483		847	AT3G46730 [Arabidopsis thalian	0.435	0.453	0.330	1.7e-61
TAIR\|locus:2037623		899	AT1G58410 [Arabidopsis thalian	0.719	0.706	0.264	1.5e-57
TAIR\|locus:2075170		835	RPP13 "RECOGNITION OF PERONOSP	0.495	0.523	0.295	2e-55
TAIR\|locus:504956186		1138	AT1G58602 [Arabidopsis thalian	0.783	0.607	0.254	1.3e-50
TAIR\|locus:504956182		1049	AT1G58848 [Arabidopsis thalian	0.676	0.569	0.270	1.1e-49
TAIR\|locus:2826978		1049	AT1G59218 [Arabidopsis thalian	0.676	0.569	0.270	1.1e-49

TAIR\|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 835 (299.0 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 206/650 (31%), Positives = 358/650 (55%)

Query:   186 LMEFHRVTNEPAPVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDN 245
             + EF++  +   P E++ +   EL+  L ++L+ K Y+VV DDVW    W ++  AL D 
Sbjct:   245 IKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTGLWREISIALPDG 304

Query:   246 KKCSRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELK 305
                SR+++TTR MNVA +     S   HE+E L  +EA  LF  K    S   C    L+
Sbjct:   305 IYGSRVMMTTRDMNVASFPYGIGSTK-HEIELLKEDEAWVLFSNKAFPASLEQCRTQNLE 363

Query:   306 ELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSE 365
              +++ ++ +C GLPLAI ++G ++S+K +  SEWKK++  L   L ++  LK    ++  
Sbjct:   364 PIARKLVERCQGLPLAIASLGSMMSTK-KFESEWKKVYSTLNWELNNNHELKIVRSIMFL 422

Query:   366 GYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELI 425
              +  LP+ LK C L   LF  + ++   RLIR+W+A+ FV+  +   +E+VA+ YLNEL+
Sbjct:   423 SFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELV 482

Query:   426 DRSLVQVSKRDISGRARICQVHDLMHQIIIRKTEELGFSRVMN----GEDLSRSSK---T 478
              R+++QV   +  GR +  ++HD++ +I +  ++   F  V N    G+D + + +   +
Sbjct:   483 YRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGS 542

Query:   479 RRITVQRSIDDGALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDY 538
             R + +Q+ +     +SI+ + + S+ + +  K     +     +  L++ LDLED+ +  
Sbjct:   543 RHLCIQKEMTP---DSIRATNLHSLLVCSSAKHKMELL----PSLNLLRALDLEDSSISK 595

Query:   539 LPEGVGNLFNLHYLSLRNTKVKIIPTSIGNLLSLETLNMKNTLVRELPVEIRNLKKLRYL 598
             LP+ +  +FNL YL+L  T+VK +P +   L++LETLN K++ + ELP+ +  LKKLRYL
Sbjct:   596 LPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYL 655

Query:   599 MVYQY---HYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELMKLRQLRML 655
             + ++    H ++ + +     V K+      L +LQ +    A+ +++K L  + QL  +
Sbjct:   656 ITFRRNEGHDSNWNYVLGTRVVPKI----WQLKDLQVMDCFNAEDELIKNLGCMTQLTRI 711

Query:   656 S-IRPQNGNGKDLCALIXXXXXXXXXXVEMTSKEEMLDLQSLSSPPQYLQRLHLTGNMKK 714
             S +  +  +G+DLC  +          +    +EE L++  L +    +++L L G +++
Sbjct:   712 SLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATAS-IEKLFLAGKLER 770

Query:   715 LPDWIFKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYELFHFEAGWFPKLQ 774
             +P W   L+NL  LGL  S L E  I  +QTLP L+ L F  AY      F  G F  L+
Sbjct:   771 VPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQG-FQNLK 829

Query:   775 KLLLWEFKAVKSVIIEKGAMPDIRELWIGPCPLLMEIPIGIEHLKNLKLL 824
              L + + K +  V+IE GAM ++++L++  C  L  +P GIE+L NL+ L
Sbjct:   830 ILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQEL 879

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR\|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		882
pfam00931		285	pfam00931, NB-ARC, NB-ARC domain	5e-40
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-09
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
PLN00113		968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113		968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
PLN03210		1153	PLN03210, PLN03210, Resistant to P	8e-04
pfam12799		43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-04

>gnl\|CDD\|216202 pfam00931, NB-ARC, NB-ARC domain	Back alignment and domain information

 Score =  149 bits (377), Expect = 5e-40
 Identities = 78/207 (37%), Positives = 117/207 (56%), Gaps = 5/207 (2%)

Query: 200 EIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMN 259
           +  +  E EL   +++ L  K +++V DDVW+ + W  +     D +  SR+IVTTR  +
Sbjct: 80  DWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTRSES 139

Query: 260 VAKYCKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLP 319
           VA     +S    HE+E+L P E+ +LF  KV       C   EL+E++++I+ KC GLP
Sbjct: 140 VAGRMGGTS--KPHEVESLEPEESWELFSNKVFEKELPPC--PELEEVAKEIVEKCKGLP 195

Query: 320 LAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYALPHHLKSCLL 379
           LA+  +GGLL+ K+ V  EW+ + ++L + L     L +   +LS  Y  LP HLK C L
Sbjct: 196 LALKVLGGLLAFKSTV-QEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFL 254

Query: 380 SFGLFQESCKVNCARLIRLWIAEGFVQ 406
              LF E   +   +LI+LWIAEGFV 
Sbjct: 255 YLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		882
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210		1153	Resistant to P. syringae 6; Provisional	100.0
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.97
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.86
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.84
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.83
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.83
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.75
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.47
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.42
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.41
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.38
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.33
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.32
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	99.23
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.95
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.85
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.85
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.83
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.74
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.73
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.66
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.64
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.61
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.57
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.53
KOG4341		483	consensus F-box protein containing LRR [General fu	98.45
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.43
PLN03150		623	hypothetical protein; Provisional	98.34
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.31
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.28
KOG4341		483	consensus F-box protein containing LRR [General fu	98.27
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.25
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.15
PLN03150		623	hypothetical protein; Provisional	98.15
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	98.01
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
PRK04841		903	transcriptional regulator MalT; Provisional	97.96
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.88
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.79
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.75
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.7
PRK15386		426	type III secretion protein GogB; Provisional	97.64
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.61
PRK15386		426	type III secretion protein GogB; Provisional	97.6
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.54
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.32
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	97.3
KOG1947		482	consensus Leucine rich repeat proteins, some prote	97.03
PF12061		402	DUF3542: Protein of unknown function (DUF3542); In	96.86
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.59
PRK00411		394	cdc6 cell division control protein 6; Reviewed	96.53
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.36
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.33
KOG1947		482	consensus Leucine rich repeat proteins, some prote	96.07
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.06
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.03
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.01
PRK06893		229	DNA replication initiation factor; Validated	95.91
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.87
PF05729		166	NACHT: NACHT domain	95.72
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.69
PF05659		147	RPW8: Arabidopsis broad-spectrum mildew resistance	95.66
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	95.5
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	95.37
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	95.37
KOG0473		326	consensus Leucine-rich repeat protein [Function un	95.25
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.73
COG2909		894	MalT ATP-dependent transcriptional regulator [Tran	94.08
COG3903		414	Predicted ATPase [General function prediction only	94.05
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.1
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	92.58
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.5
PF13173		128	AAA_14: AAA domain	91.61
PRK05564		313	DNA polymerase III subunit delta'; Validated	90.9
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.71
KOG0473		326	consensus Leucine-rich repeat protein [Function un	90.65
KOG3864		221	consensus Uncharacterized conserved protein [Funct	90.13
PRK09087		226	hypothetical protein; Validated	89.49
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.16
PRK07471		365	DNA polymerase III subunit delta'; Validated	88.96
KOG3864		221	consensus Uncharacterized conserved protein [Funct	88.66
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	88.0
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	86.9
PRK13342		413	recombination factor protein RarA; Reviewed	86.45
COG3899		849	Predicted ATPase [General function prediction only	86.33
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	86.3
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	86.25
smart00370		26	LRR Leucine-rich repeats, outliers.	86.25
PRK09112		351	DNA polymerase III subunit delta'; Validated	85.63
smart00370		26	LRR Leucine-rich repeats, outliers.	85.52
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	85.52
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	83.26
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	80.47

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=1.6e-81  Score=733.63  Aligned_cols=777  Identities=26%  Similarity=0.383  Sum_probs=577.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCchhHHHHHHHHHHHHhhhhhH
Q 002780            2 AEAAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVEELEGGGEESVRTWVKQLRDEAYRIED   81 (882)
Q Consensus         2 A~~~v~~~~~kl~~~l~~e~~~~~~v~~~~~~L~~~L~~i~a~l~~ae~~~~~~~~~~~~~~~~~~wl~~lr~~ayd~eD   81 (882)
                      |++.+++.++|+.+++.+++..+.++++.+..|+++|..++++++||++++...       ..++.|.+.+++++|++||
T Consensus         1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~-------~~~~~~~e~~~~~~~~~e~   73 (889)
T KOG4658|consen    1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDL-------ERRVNWEEDVGDLVYLAED   73 (889)
T ss_pred             CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchH-------HHHHHHHHHHHHHHHHHHH
Confidence            355667788999999999999999999999999999999999999999999887       8999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCC-cc---chhhHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCcc
Q 002780           82 VIDEYTLMVAKLPHGRGL-VG---VLRRISRFIKKLKLRRGVATEIQDIKSALADIKRRGESYRFRSIDEPSSSGTRNVI  157 (882)
Q Consensus        82 ~lD~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  157 (882)
                      +++.|......  .+..+ ..   ...+..+   -..++++.+..+..+.+++..+.+.++.++....-...+... .  
T Consensus        74 ~~~~~~v~~~~--~~~~~~l~~~~~~~~~~c---~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~-~--  145 (889)
T KOG4658|consen   74 IIWLFLVEEIE--RKANDLLSTRSVERQRLC---LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL-D--  145 (889)
T ss_pred             HHHHHHHHHHH--HHHhHHhhhhHHHHHHHh---hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc-c--
Confidence            99999887765  22111 11   1111111   126778888888888888888888888887654221101000 0  


Q ss_pred             ccCCCccccccCCCceEEeccchHHHHH-----------------------HHhhhhh----------------------
Q 002780          158 PHDSRVRSFFVEDDEVVGIESIKDKLID-----------------------LMEFHRV----------------------  192 (882)
Q Consensus       158 ~~~~~~~~~~~~~~~~vG~~~~~~~l~~-----------------------~~~i~~~----------------------  192 (882)
                      +...+++.+...+.+ ||.++.++++.+                       ++++...                      
T Consensus       146 ~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~  224 (889)
T KOG4658|consen  146 PREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT  224 (889)
T ss_pred             chhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence            112233333333334 777777666666                       2222221                      


Q ss_pred             ------cCCCC---CcccCccCHHHHHHHHHHHhCCceEEEEEecCCChhhHHHhHHhcCCCCCCcEEEEecCchHHHhh
Q 002780          193 ------TNEPA---PVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKY  263 (882)
Q Consensus       193 ------~~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~  263 (882)
                            +...+   .......+.++++..|.+.|++|||+|||||||+..+|+.+..++|...+||+|++|||++.|+..
T Consensus       225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~  304 (889)
T KOG4658|consen  225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGR  304 (889)
T ss_pred             HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence                  11111   111222334689999999999999999999999999999999999999999999999999999998


Q ss_pred             -hccCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHHhcCCCCChHHHHHH
Q 002780          264 -CKSSSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKL  342 (882)
Q Consensus       264 -~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~~w~~~  342 (882)
                       |++.   ..++++.|+++|||.||++.||....+  ..+.+.++|++||++|+|+|||++++|+.|++|.. .++|+++
T Consensus       305 ~m~~~---~~~~v~~L~~~eaW~LF~~~v~~~~~~--~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-~~eW~~~  378 (889)
T KOG4658|consen  305 AMGVD---YPIEVECLTPEEAWDLFQKKVGPNTLG--SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-VQEWRRA  378 (889)
T ss_pred             cccCC---ccccccccCccccHHHHHHhhcccccc--ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-HHHHHHH
Confidence             6654   899999999999999999999987532  23449999999999999999999999999999987 8899999


Q ss_pred             HHHhccccCCC--CChhhHHHHHHhccCCCCcchhHHHhhccccCCCceechHHHHHHHHHcCcccc-CCCCCHHHHHHH
Q 002780          343 FDRLGSILGSD--PHLKDCNRVLSEGYYALPHHLKSCLLSFGLFQESCKVNCARLIRLWIAEGFVQY-SKRPTSEQVAEE  419 (882)
Q Consensus       343 l~~~~~~~~~~--~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~a~g~i~~-~~~~~~e~~~~~  419 (882)
                      .+.+.+....+  ...+.+.++|++||+.||+++|.||+|||+||+||.|+++.||.+|+||||+.+ ..+.++++.|++
T Consensus       379 ~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~  458 (889)
T KOG4658|consen  379 LNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD  458 (889)
T ss_pred             HccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence            99998874432  235789999999999999889999999999999999999999999999999988 557889999999


Q ss_pred             HHHHHHhCCcccccccCCCCcEeEeeccHHHHHHHHHHhh-----HhCceEeeC-----CCCcccCCCeEEEEEeccCCc
Q 002780          420 YLNELIDRSLVQVSKRDISGRARICQVHDLMHQIIIRKTE-----ELGFSRVMN-----GEDLSRSSKTRRITVQRSIDD  489 (882)
Q Consensus       420 ~~~~L~~~sll~~~~~~~~g~~~~~~mhdlv~dla~~~~~-----~~~~~~~~~-----~~~~~~~~~~r~l~~~~~~~~  489 (882)
                      |+.+|++++|++.....  ++...|+|||+|+|+|.++++     +++++...+     ......+..+||++++.....
T Consensus       459 ~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~  536 (889)
T KOG4658|consen  459 YIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE  536 (889)
T ss_pred             HHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh
Confidence            99999999999987754  677899999999999999999     666443322     112234457899999988776


Q ss_pred             cccccccccceeEEEEecCCCCCcccccccccCCceeeEEEecCCC-CCCCccccCCccCCcEEEEecCCCccccccccC
Q 002780          490 GALESIKESKVRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAP-VDYLPEGVGNLFNLHYLSLRNTKVKIIPTSIGN  568 (882)
Q Consensus       490 ~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~~lp~~i~~l~~Lr~L~L~~~~l~~lp~~i~~  568 (882)
                      .......++++++|.+..+..........+|..++.||||||++|. +.++|++|++|.|||||+|+++.++.+|.++.+
T Consensus       537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~  616 (889)
T KOG4658|consen  537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN  616 (889)
T ss_pred             hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence            6667788889999999987531233445668999999999999765 569999999999999999999999999999999


Q ss_pred             CCCCcEEEccCc-cccccchhhhcccccCeeecccccccCCCchhhhhhhccccCcccCCcccccccceecCHHhHHHhc
Q 002780          569 LLSLETLNMKNT-LVRELPVEIRNLKKLRYLMVYQYHYTSGSSITEEAAVAKVRGGFGSLTNLQKLSIIEADSQVLKELM  647 (882)
Q Consensus       569 L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~  647 (882)
                      |+.|.+||+..+ .+..+|..+..|.+||+|.+......         .....-..+.++.+|+.|.....+......+.
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~  687 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSITISSVLLLEDLL  687 (889)
T ss_pred             HHhhheeccccccccccccchhhhcccccEEEeeccccc---------cchhhHHhhhcccchhhheeecchhHhHhhhh
Confidence            999999999988 56666666667999999999874322         11122223455566666655444444445555


Q ss_pred             CCCCCcEEEEEe--cCCCchhHHHHhccCCCCCEEEEeecCCccccc--cCCCC--C-CCCCccEEEeecc-CCCCCccc
Q 002780          648 KLRQLRMLSIRP--QNGNGKDLCALITNLENLETLTVEMTSKEEMLD--LQSLS--S-PPQYLQRLHLTGN-MKKLPDWI  719 (882)
Q Consensus       648 ~l~~L~~L~l~~--~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~--l~~l~--~-~~~~L~~L~l~~~-~~~lp~~~  719 (882)
                      .+..|..+...-  ..........++..+.+|+.|.+..+...+...  .....  . ++ ++.++.+..+ ....+.|.
T Consensus       688 ~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~-~l~~~~~~~~~~~r~l~~~  766 (889)
T KOG4658|consen  688 GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP-NLSKVSILNCHMLRDLTWL  766 (889)
T ss_pred             hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH-HHHHHHhhccccccccchh
Confidence            555555322211  112223345667889999999999987654321  01000  0 11 3444444443 34566677


Q ss_pred             cCCCCccEEEEeecCCCcccchhhcCCCccceeEeecccCCCe-EEEccCCCcccceeEecccCCceeeEEcC----CCc
Q 002780          720 FKLKNLIRLGLDLSGLTEEPIRVLQTLPNLLELRFTGAYNYEL-FHFEAGWFPKLQKLLLWEFKAVKSVIIEK----GAM  794 (882)
Q Consensus       720 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~  794 (882)
                      ...++|+.|.+.+|....++++....+..+..+.+..+..... .....++||++..+.+.+-. +..+....    +.|
T Consensus       767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~  845 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKL  845 (889)
T ss_pred             hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hhheehhcCcccccC
Confidence            7789999999999998888888888777777755554433333 45556667766666666433 44444333    556


Q ss_pred             cCccEEEeecC-CCcCcccc
Q 002780          795 PDIRELWIGPC-PLLMEIPI  813 (882)
Q Consensus       795 ~~L~~L~l~~c-~~l~~lp~  813 (882)
                      |.+.++.+.+| ..+...|.
T Consensus       846 P~~~~~~i~~~~~~~~~~~~  865 (889)
T KOG4658|consen  846 PLLSTLTIVGCEEKLKEYPD  865 (889)
T ss_pred             ccccccceeccccceeecCC
Confidence            66666666665 44444444

>PLN03210 Resistant to P	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]	Back alignment and domain information

>COG3903 Predicted ATPase [General function prediction only]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>COG3899 Predicted ATPase [General function prediction only]	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		882
3qfl_A		115	Coiled-Coil Domain-Dependent Homodimerization Of In		4e-06

>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of Intracellular Mla Immune Receptors Defines A Minimal Functional Module For Triggering Cell Death Length = 115

Back alignment and structure

Iteration: 1

Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 4 AAVNFAIETLGPLLVEKIKLWGGVRKEVQSIKTEMESLRSFLKDADARAAVXXXXXXXXX 63 AA++ I LG LL E+ KL GV+K ++ + E+ES + L + Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAAL------IKIGEVPREQLD 54 Query: 64 SV-RTWVKQLRDEAYRIEDVIDEYTLMVAKLP---HGRGLVGVLRRISRFIKKLKLRRGV 119 S + W ++R+ +Y IEDV+D++ + V + + G+ +R + +KK+K + G+ Sbjct: 55 SQDKLWADEVRELSYVIEDVVDKFLVQVDGIKSDDNNNKFKGLXKRTTELLKKVKHKHGI 114 Query: 120 A 120 A Sbjct: 115 A 115

PyMOL of 3qfl

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		882
1z6t_A		591	APAF-1, apoptotic protease activating factor 1; ca	7e-70
2a5y_B		549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-55
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-42
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
3qfl_A		115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	4e-27
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-21
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	2e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	6e-15
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	6e-06
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	7e-16
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	7e-16
1o6v_A		466	Internalin A; bacterial infection, extracellular r	7e-15
1o6v_A		466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A		466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	2e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-11
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-14
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-11
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	8e-14
3sfz_A		1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-13
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-10
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	6e-12
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-12
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	2e-04
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	9e-11
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	7e-09
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	3e-06
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	2e-04
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	8e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591	Back alignment and structure

 Score =  241 bits (617), Expect = 7e-70
 Identities = 68/436 (15%), Positives = 138/436 (31%), Gaps = 61/436 (13%)

Query: 154 RNVIPHDSRVRSFFVEDDEV----VGIESIKDKLIDLME-FHRVTNEPAPVEIHDMEEME 208
              +   S +   F     V    VG +     L+ L     R+  + +  +   +   E
Sbjct: 165 AEAVRDHSLLEGCF--PGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEE 222

Query: 209 LITALRDHL--KDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKS 266
               LR  +  K    +++ DDVW                   +I++TTR  +V      
Sbjct: 223 AKDRLRILMLRKHPRSLLILDDVWDSWVL-------KAFDSQCQILLTTRDKSVTDSVMG 275

Query: 267 SSSVHVHELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVG 326
              V      +L   +  ++    V          ++L E +  I+ +C G PL +  +G
Sbjct: 276 PKYVV-PVESSLGKEKGLEILSLFV------NMKKADLPEQAHSIIKECKGSPLVVSLIG 328

Query: 327 GLLSSKNRVVSEWKKLFDRLGSILG------SDPHLKDCNRVLSEGYYALPHHLKSCLLS 380
            LL       + W+    +L +         S    +  +  +S     L   +K     
Sbjct: 329 ALLRDFP---NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTD 385

Query: 381 FGLFQESCKVNCARLIRLWIAEGFVQYSKRPTSEQVAEEYLNELIDRSLVQVSKRDISGR 440
             + Q+  KV    L  LW  E            +  E+ L E +++SL+   +   +G+
Sbjct: 386 LSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDR---NGK 431

Query: 441 ARICQVHDLMHQIIIRKT-EELGFSRVMNGEDLSRSSKTRRITVQRSIDDGALESIKESK 499
           +    +HDL    +  K   +L            R  +   ++  +  D     +     
Sbjct: 432 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQE-DCMYWYNFLAYH 490

Query: 500 VRSVFLFNVDKLPDSFMNASIANFKLIKVLDLEDAPVDYLPEGVGNLFNLHYLSLRNTKV 559
           + S  +    +L     +      K  +++       ++          + Y  + + K 
Sbjct: 491 MASAKMH--KELCALMFSLDWIKAKT-ELVGPAHLIHEF----------VEYRHILDEKD 537

Query: 560 KIIPTSIGNLLSLETL 575
             +  +    LSL   
Sbjct: 538 CAVSENFQEFLSLNGH 553

PyMOL of 1z6t

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		882
d2a5yb3		277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-30
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1koha1		162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1a9na_		162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1dcea3		124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1ogqa_		313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  119 bits (298), Expect = 2e-30
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 19/226 (8%)

Query: 153 TRNVIPHDSRVRSFFVEDDEVVGIESIKDKLIDLMEFHRVTNEPAPVEIHDMEEMELITA 212
           +  +I  +     +  +              I LM          P   H    +     
Sbjct: 68  SDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMI 127

Query: 213 LRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHV 272
               +   + + VFDDV         E      +   R +VTTR + ++     +     
Sbjct: 128 CNALIDRPNTLFVFDDVV------QEETIRWAQELRLRCLVTTRDVEISNAASQT--CEF 179

Query: 273 HELETLPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSK 332
            E+ +L  +E         +          + +++    +    G P  ++        K
Sbjct: 180 IEVTSLEIDECYDFLEAYGMP----MPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 235

Query: 333 NRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYYALPHHLKSCL 378
                +  +L ++L S       L     +    Y +L   L+ C+
Sbjct: 236 TF--EKMAQLNNKLES-----RGLVGVECITPYSYKSLAMALQRCV 274

PyMOL of d2a5yb3

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		882
d2a5yb3		277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.98
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.76
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.74
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.64
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.57
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.3
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.22
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.15
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.15
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.04
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.71
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.7
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.51
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.43
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	97.14
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	97.12
d2fnaa2		283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.07
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.67
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.44
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	87.23
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	82.4

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=3.5e-32  Score=214.02  Aligned_cols=165  Identities=16%  Similarity=0.166  Sum_probs=135.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEECCC
Q ss_conf             74347357899999999971794089999468891357785881379999838999648647874310499832154379
Q 002780          198 PVEIHDMEEMELITALRDHLKDKSYMVVFDDVWKIDFWGDVEHALLDNKKCSRIIVTTRHMNVAKYCKSSSSVHVHELET  277 (882)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~L~~kr~LiVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~l~~  277 (882)
                      +..............+.+.+.++|+|+||||||+.++|+.+..      .|||||||||++.++..+...  .++|+|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~~~~~~--~~~~~l~~  184 (277)
T d2a5yb3         113 PSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISNAASQT--CEFIEVTS  184 (277)
T ss_dssp             CCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGGGCCSC--EEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC------CCCEEEEEEEHHHHHHHCCCC--CCEEECCC
T ss_conf             6321233699999999998446881675250667766555204------575599996448999863788--71687788


Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             99477999999997199999999826899999999990997138999987750899896799999988300018998704
Q 002780          278 LPPNEARKLFCRKVLGPSSGGCCPSELKELSQDILAKCGGLPLAIVAVGGLLSSKNRVVSEWKKLFDRLGSILGSDPHLK  357 (882)
Q Consensus       278 L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~~~w~~~~~~~~~~~~~~~~~~  357 (882)
                      |+.+|||+||++++|...    ..+..++++++|+++|+|+|||++++|+.|+.+.  .+.|.+..+.+....     ..
T Consensus       185 L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~--~~~~~~~~~~L~~~~-----~~  253 (277)
T d2a5yb3         185 LEIDECYDFLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT--FEKMAQLNNKLESRG-----LV  253 (277)
T ss_dssp             CCHHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS--HHHHHHHHHHHHHHC-----SS
T ss_pred             CCHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHCCC-----HH
T ss_conf             997999999999847766----7425679999999995899899999999865598--999999999973486-----78


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHC
Q ss_conf             489998720179980146787221
Q 002780          358 DCNRVLSEGYYALPHHLKSCLLSF  381 (882)
Q Consensus       358 ~~~~~l~~sy~~L~~~~k~cfl~~  381 (882)
                      .+..++.+||++||+++|.||-++
T Consensus       254 ~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         254 GVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             TTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             899999998851269999999739

PyMOL of d2a5yb3

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure