Citrus Sinensis ID: 002789
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 881 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC79 | 988 | Exportin-T OS=Arabidopsis | yes | no | 0.972 | 0.867 | 0.743 | 0.0 | |
| Q8H3A7 | 980 | Exportin-T OS=Oryza sativ | yes | no | 0.952 | 0.856 | 0.501 | 0.0 | |
| O43592 | 962 | Exportin-T OS=Homo sapien | yes | no | 0.929 | 0.851 | 0.289 | 5e-99 | |
| Q9CRT8 | 963 | Exportin-T OS=Mus musculu | yes | no | 0.929 | 0.850 | 0.293 | 5e-99 | |
| Q5RA02 | 962 | Exportin-T OS=Pongo abeli | yes | no | 0.929 | 0.851 | 0.288 | 2e-98 | |
| Q5SPJ8 | 961 | Exportin-T OS=Danio rerio | yes | no | 0.929 | 0.852 | 0.284 | 2e-91 | |
| Q2H6R9 | 1019 | Exportin-T OS=Chaetomium | N/A | no | 0.945 | 0.817 | 0.247 | 6e-66 | |
| A7EPT5 | 1023 | Exportin-T OS=Sclerotinia | N/A | no | 0.955 | 0.823 | 0.236 | 9e-64 | |
| Q5ASE3 | 1031 | Exportin-T OS=Emericella | yes | no | 0.919 | 0.785 | 0.260 | 1e-61 | |
| A6RVT8 | 1022 | Exportin-T OS=Botryotinia | N/A | no | 0.936 | 0.807 | 0.232 | 1e-60 |
| >sp|Q7PC79|XPOT_ARATH Exportin-T OS=Arabidopsis thaliana GN=PSD PE=2 SV=1 | Back alignment and function desciption |
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Score = 1315 bits (3403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/858 (74%), Positives = 750/858 (87%), Gaps = 1/858 (0%)
Query: 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCL 60
MDDLE+AI+ SF E+GA+DS LKSQAV +CQQIKETPSIC ICIEKL +VQVQFWCL
Sbjct: 1 MDDLEQAIVISF-ETGAVDSALKSQAVTYCQQIKETPSICSICIEKLWFSKLVQVQFWCL 59
Query: 61 QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
QTL +V+RVKY SMS +E++ +R+SVFSM C E++D +++ RV+E P F++NKLAQVL T
Sbjct: 60 QTLQDVLRVKYGSMSLDEQSYVRKSVFSMACLEVIDNENAGRVVEGPPFVKNKLAQVLAT 119
Query: 121 LIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARI 180
LIY+EYPLIWSSVF+DF+ L KG++VIDMFCRVLN+LDDELISLDYPRT +E++VAAR+
Sbjct: 120 LIYYEYPLIWSSVFLDFMLHLCKGAVVIDMFCRVLNALDDELISLDYPRTPEEISVAARV 179
Query: 181 KDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF 240
KDAMRQQCV QI RAWYDIVSMY++SD ++ VLDCMRR++SWIDI L+ANDAF+PLLF
Sbjct: 180 KDAMRQQCVPQIARAWYDIVSMYKNSDPDLSATVLDCMRRFVSWIDIGLVANDAFVPLLF 239
Query: 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSK 300
ELIL+DGL EQ RGAA GCVLA+VSKRMDPQSKL LLQTLQISRVFGLVS D +S+LVSK
Sbjct: 240 ELILSDGLSEQVRGAAAGCVLAMVSKRMDPQSKLPLLQTLQISRVFGLVSGDVDSDLVSK 299
Query: 301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360
V+ALLTGYA+EVL+C KRLN+E+ S LLNEVLPSVFYVMQ CEVD+TFSIVQFL G
Sbjct: 300 VSALLTGYAVEVLECHKRLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQFLLG 359
Query: 361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD 420
YV+T+K L LKE+Q LH QILEVI QI YDPMYRNNL+ LDK G+EEEDRM E+RKD
Sbjct: 360 YVSTLKGLPALKEKQLLHITQILEVIRIQICYDPMYRNNLNSLDKTGLEEEDRMSEFRKD 419
Query: 421 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT 480
L VLLR+VGRVAPEVTQ FIRNSLANAV S++ NVEEVEAAL+LLY+ GESM+EEAM+T
Sbjct: 420 LFVLLRTVGRVAPEVTQHFIRNSLANAVESSSESNVEEVEAALSLLYSFGESMTEEAMKT 479
Query: 481 GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI 540
G+G LSEL+PMLL T+ P HS+RLVALVYLE +TRYMKFIQE++QYIP VL AFLD+RG+
Sbjct: 480 GSGCLSELIPMLLTTQFPGHSHRLVALVYLENITRYMKFIQENSQYIPNVLGAFLDDRGL 539
Query: 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 600
HH N +VSRRA YLFMRVVKLLK+KLVPFI+ ILQ+LQDT+++ T+MN+AS+EL+G+EDG
Sbjct: 540 HHQNFYVSRRAGYLFMRVVKLLKSKLVPFIDKILQNLQDTLSQLTTMNFASRELTGTEDG 599
Query: 601 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQ 660
SHIFEAIG++IG+EDVP EKQSDYLS LLTPLCQQ++ L+ AK+ + E+ K ANIQ
Sbjct: 600 SHIFEAIGIIIGLEDVPAEKQSDYLSLLLTPLCQQIEAGLVQAKVASSEDFPVKIANIQF 659
Query: 661 IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 720
I+AINALSKGFNERLVT+SRP IGLMFKQTLDVLL++L+ FPKVEPLR KVTSFIHRMV
Sbjct: 660 AIVAINALSKGFNERLVTASRPGIGLMFKQTLDVLLRVLIEFPKVEPLRSKVTSFIHRMV 719
Query: 721 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780
DTLG++VFPYLPKALEQLLA+SEPKEM GF+VLLNQLICKFN+ +HDIL+EV+P +A RI
Sbjct: 720 DTLGSAVFPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRI 779
Query: 781 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 840
FN+IPRD PS PG TEE+RE+ ELQR LYTFLHVIATHDLSSVFL+PKSR YLDP+MQ
Sbjct: 780 FNVIPRDGLPSRPGAVTEEMRELIELQRMLYTFLHVIATHDLSSVFLTPKSRAYLDPMMQ 839
Query: 841 LLLYTSCNHKDYLVRKVC 858
L+L TSCNHKD VRK C
Sbjct: 840 LVLNTSCNHKDITVRKAC 857
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Probable tRNA nucleus export receptor which regulates tRNA processing and facilitates tRNA translocation across the nuclear pore complex. Is required for proper activity of the shoot apical meristem (SAM) and correct leaf initiation at different developmental stages, and may play a role in floral patterning. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H3A7|XPOT_ORYSJ Exportin-T OS=Oryza sativa subsp. japonica GN=Os07g0613300 PE=2 SV=1 | Back alignment and function description |
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| >sp|O43592|XPOT_HUMAN Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9CRT8|XPOT_MOUSE Exportin-T OS=Mus musculus GN=Xpot PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5RA02|XPOT_PONAB Exportin-T OS=Pongo abelii GN=XPOT PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5SPJ8|XPOT_DANRE Exportin-T OS=Danio rerio GN=xpot PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2H6R9|XPOT_CHAGB Exportin-T OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=LOS1 PE=3 SV=1 | Back alignment and function description |
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| >sp|A7EPT5|XPOT_SCLS1 Exportin-T OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=los1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5ASE3|XPOT_EMENI Exportin-T OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=los1 PE=3 SV=1 | Back alignment and function description |
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| >sp|A6RVT8|XPOT_BOTFB Exportin-T OS=Botryotinia fuckeliana (strain B05.10) GN=los1 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 881 | ||||||
| 255560611 | 988 | Exportin-T, putative [Ricinus communis] | 0.973 | 0.868 | 0.807 | 0.0 | |
| 225442110 | 992 | PREDICTED: exportin-T [Vitis vinifera] g | 0.973 | 0.864 | 0.771 | 0.0 | |
| 224073696 | 994 | predicted protein [Populus trichocarpa] | 0.973 | 0.863 | 0.757 | 0.0 | |
| 224119496 | 941 | predicted protein [Populus trichocarpa] | 0.979 | 0.917 | 0.744 | 0.0 | |
| 356506134 | 986 | PREDICTED: exportin-T-like [Glycine max] | 0.970 | 0.867 | 0.760 | 0.0 | |
| 356573302 | 983 | PREDICTED: exportin-T-like [Glycine max] | 0.968 | 0.867 | 0.756 | 0.0 | |
| 12323783 | 993 | putative exportin, tRNA (nuclear export | 0.978 | 0.868 | 0.741 | 0.0 | |
| 42563175 | 988 | protein PAUSED [Arabidopsis thaliana] gi | 0.972 | 0.867 | 0.743 | 0.0 | |
| 30909319 | 988 | PAUSED [Arabidopsis thaliana] | 0.972 | 0.867 | 0.743 | 0.0 | |
| 449447900 | 990 | PREDICTED: exportin-T-like [Cucumis sati | 0.973 | 0.866 | 0.743 | 0.0 |
| >gi|255560611|ref|XP_002521319.1| Exportin-T, putative [Ricinus communis] gi|223539397|gb|EEF40987.1| Exportin-T, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1453 bits (3762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/858 (80%), Positives = 779/858 (90%)
Query: 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCL 60
MDDLEKAIL SFDESG +DS LKSQAV+FCQQIK+T SICRICIEKL C +VQVQFWCL
Sbjct: 1 MDDLEKAILISFDESGTVDSSLKSQAVSFCQQIKDTKSICRICIEKLYFCKLVQVQFWCL 60
Query: 61 QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
QTL EV++VKY +S EE++ IR+SVFSM C +++D +++R LE PAFI+NKLAQVLVT
Sbjct: 61 QTLHEVIKVKYALLSLEEKDFIRKSVFSMCCFDVIDDGNAVRFLEGPAFIKNKLAQVLVT 120
Query: 121 LIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARI 180
LIYFEYPL+WSSV VDFLP L+KG++VIDMFCRVLN+LDDELISLDYPRT +ELTVA R+
Sbjct: 121 LIYFEYPLVWSSVIVDFLPHLSKGAIVIDMFCRVLNALDDELISLDYPRTLEELTVAGRV 180
Query: 181 KDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF 240
KDAMRQQCV QIVRAWYDI+SMYR+SD EVC+ VLD MRRYISW+DI LI NDAFIPLLF
Sbjct: 181 KDAMRQQCVGQIVRAWYDIISMYRNSDPEVCSNVLDSMRRYISWVDIGLIVNDAFIPLLF 240
Query: 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSK 300
ELIL G EQ +GAA GC+LAVVSKRMDPQSKL +L++LQISRVF LV+ D ESELVSK
Sbjct: 241 ELILVYGESEQLQGAAAGCILAVVSKRMDPQSKLTILKSLQISRVFALVTGDSESELVSK 300
Query: 301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360
+AAL+TGYA+EVL+C KR+ AE+A S +LLNEV+PSVFYVMQNCEVDT FSIVQFLSG
Sbjct: 301 IAALITGYAVEVLECYKRVTAEDAKGVSLELLNEVMPSVFYVMQNCEVDTAFSIVQFLSG 360
Query: 361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD 420
YVATMKSLSPL+E+Q + GQILEVI TQIRYDP+YRNNLD+LDKIG EEEDRMVE+RKD
Sbjct: 361 YVATMKSLSPLREKQAHYVGQILEVIRTQIRYDPVYRNNLDMLDKIGREEEDRMVEFRKD 420
Query: 421 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT 480
L VLLRSVGRVAPEVTQVFIRNSL +AV S +RNVEEVEAA++LLYALGES+S+EAMRT
Sbjct: 421 LFVLLRSVGRVAPEVTQVFIRNSLVSAVASSTERNVEEVEAAVSLLYALGESLSDEAMRT 480
Query: 481 GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI 540
G+G L ELV MLL T+ PCHSNR+VALVYLET TRYMKF+QE+TQYIP+VL AFLDERGI
Sbjct: 481 GSGLLGELVSMLLSTRFPCHSNRIVALVYLETTTRYMKFVQENTQYIPMVLTAFLDERGI 540
Query: 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 600
HHPNVHVSRRASYLFMRVVKLLKAKLVPFIE ILQSLQDT+ARFTSM+YAS EL GSEDG
Sbjct: 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIERILQSLQDTVARFTSMDYASHELFGSEDG 600
Query: 601 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQ 660
SHIFEAIGLLIGMEDVP EKQ+DYLS+LLTPLC QV+ +L++AK+LN +ES K NIQQ
Sbjct: 601 SHIFEAIGLLIGMEDVPSEKQADYLSALLTPLCHQVEILLMNAKVLNSDESPGKIINIQQ 660
Query: 661 IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 720
IIMAINALSKGF+ERLVT+SRPAIGLMFKQTLD+LLQILVVFPK+EPLR KVTSFIHRMV
Sbjct: 661 IIMAINALSKGFSERLVTASRPAIGLMFKQTLDILLQILVVFPKIEPLRSKVTSFIHRMV 720
Query: 721 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780
DTLGASVFPYLPKALEQLLAE EP+EM GFLVLLNQLICKFNTLVHDI++EVFPAIAGRI
Sbjct: 721 DTLGASVFPYLPKALEQLLAECEPREMVGFLVLLNQLICKFNTLVHDIVEEVFPAIAGRI 780
Query: 781 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 840
F++IPRDAFPSGPGTNTEEIRE+QELQ+T+YTFLHVIATHDLSSVFLSPKSRGYLD +MQ
Sbjct: 781 FSVIPRDAFPSGPGTNTEEIRELQELQKTMYTFLHVIATHDLSSVFLSPKSRGYLDSLMQ 840
Query: 841 LLLYTSCNHKDYLVRKVC 858
+LL+T+CNHKD LVRK C
Sbjct: 841 MLLHTACNHKDILVRKAC 858
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442110|ref|XP_002273606.1| PREDICTED: exportin-T [Vitis vinifera] gi|297742994|emb|CBI35861.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224073696|ref|XP_002304132.1| predicted protein [Populus trichocarpa] gi|222841564|gb|EEE79111.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224119496|ref|XP_002331175.1| predicted protein [Populus trichocarpa] gi|222873296|gb|EEF10427.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356506134|ref|XP_003521842.1| PREDICTED: exportin-T-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356573302|ref|XP_003554801.1| PREDICTED: exportin-T-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|12323783|gb|AAG51863.1|AC010926_26 putative exportin, tRNA (nuclear export receptor for tRNAs); 81050-85729 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|42563175|ref|NP_177400.2| protein PAUSED [Arabidopsis thaliana] gi|145327223|ref|NP_001077813.1| protein PAUSED [Arabidopsis thaliana] gi|334183864|ref|NP_001185383.1| protein PAUSED [Arabidopsis thaliana] gi|75140113|sp|Q7PC79.1|XPOT_ARATH RecName: Full=Exportin-T; AltName: Full=Exportin(tRNA); AltName: Full=Protein PAUSED; AltName: Full=tRNA exportin gi|34303902|tpg|DAA01277.1| TPA_exp: exportin-t [Arabidopsis thaliana] gi|332197219|gb|AEE35340.1| protein PAUSED [Arabidopsis thaliana] gi|332197220|gb|AEE35341.1| protein PAUSED [Arabidopsis thaliana] gi|332197221|gb|AEE35342.1| protein PAUSED [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|30909319|gb|AAP37047.1| PAUSED [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449447900|ref|XP_004141704.1| PREDICTED: exportin-T-like [Cucumis sativus] gi|449523616|ref|XP_004168819.1| PREDICTED: exportin-T-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 881 | ||||||
| TAIR|locus:2030280 | 988 | PSD "AT1G72560" [Arabidopsis t | 0.972 | 0.867 | 0.733 | 0.0 | |
| MGI|MGI:1920442 | 963 | Xpot "exportin, tRNA (nuclear | 0.929 | 0.850 | 0.290 | 3.2e-97 | |
| UNIPROTKB|O43592 | 962 | XPOT "Exportin-T" [Homo sapien | 0.929 | 0.851 | 0.287 | 5.2e-97 | |
| UNIPROTKB|J9P2A6 | 962 | XPOT "Uncharacterized protein" | 0.929 | 0.851 | 0.285 | 1.8e-96 | |
| UNIPROTKB|E2R4G4 | 963 | XPOT "Uncharacterized protein" | 0.929 | 0.850 | 0.286 | 9.7e-96 | |
| UNIPROTKB|E1C593 | 962 | XPOT "Uncharacterized protein" | 0.930 | 0.852 | 0.279 | 3.4e-93 | |
| UNIPROTKB|E1B8Q8 | 961 | E1B8Q8 "Uncharacterized protei | 0.929 | 0.852 | 0.282 | 7e-93 | |
| ZFIN|ZDB-GENE-041210-4 | 971 | xpot "exportin, tRNA (nuclear | 0.927 | 0.841 | 0.286 | 3e-92 | |
| DICTYBASE|DDB_G0283119 | 1088 | xpot "exportin, tRNA" [Dictyos | 0.491 | 0.397 | 0.312 | 1.4e-91 | |
| RGD|1305562 | 728 | Xpot "exportin, tRNA (nuclear | 0.696 | 0.843 | 0.310 | 7.9e-78 |
| TAIR|locus:2030280 PSD "AT1G72560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3250 (1149.1 bits), Expect = 0., P = 0.
Identities = 629/858 (73%), Positives = 740/858 (86%)
Query: 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCL 60
MDDLE+AI+ SF E+GA+DS LKSQAV +CQQIKETPSIC ICIEKL +VQVQFWCL
Sbjct: 1 MDDLEQAIVISF-ETGAVDSALKSQAVTYCQQIKETPSICSICIEKLWFSKLVQVQFWCL 59
Query: 61 QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
QTL +V+RVKY SMS +E++ +R+SVFSM C E++D +++ RV+E P F++NKLAQVL T
Sbjct: 60 QTLQDVLRVKYGSMSLDEQSYVRKSVFSMACLEVIDNENAGRVVEGPPFVKNKLAQVLAT 119
Query: 121 LIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARI 180
LIY+EYPLIWSSVF+DF+ L KG++VIDMFCRVLN+LDDELISLDYPRT +E++VAAR+
Sbjct: 120 LIYYEYPLIWSSVFLDFMLHLCKGAVVIDMFCRVLNALDDELISLDYPRTPEEISVAARV 179
Query: 181 KDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF 240
KDAMRQQCV QI RAWYDIVSMY++SD ++ VLDCMRR++SWIDI L+ANDAF+PLLF
Sbjct: 180 KDAMRQQCVPQIARAWYDIVSMYKNSDPDLSATVLDCMRRFVSWIDIGLVANDAFVPLLF 239
Query: 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSK 300
ELIL+DGL EQ RGAA GCVLA+VSKRMDPQSKL LLQTLQISRVFGLVS D +S+LVSK
Sbjct: 240 ELILSDGLSEQVRGAAAGCVLAMVSKRMDPQSKLPLLQTLQISRVFGLVSGDVDSDLVSK 299
Query: 301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360
V+ALLTGYA+EVL+C KRLN+E+ S LLNEVLPSVFYVMQ CEVD+TFSIVQFL G
Sbjct: 300 VSALLTGYAVEVLECHKRLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQFLLG 359
Query: 361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD 420
YV+T+K L LKE+Q LH QILEVI QI YDPMYRNNL+ LDK G+EEEDRM E+RKD
Sbjct: 360 YVSTLKGLPALKEKQLLHITQILEVIRIQICYDPMYRNNLNSLDKTGLEEEDRMSEFRKD 419
Query: 421 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT 480
L VLLR+VGRVAPEVTQ FIRNSLANAV S++ NVEEVEAAL+LLY+ GESM+EEAM+T
Sbjct: 420 LFVLLRTVGRVAPEVTQHFIRNSLANAVESSSESNVEEVEAALSLLYSFGESMTEEAMKT 479
Query: 481 GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI 540
G+G LSEL+PMLL T+ P HS+RLVALVYLE +TRYMKFIQE++QYIP VL AFLD+RG+
Sbjct: 480 GSGCLSELIPMLLTTQFPGHSHRLVALVYLENITRYMKFIQENSQYIPNVLGAFLDDRGL 539
Query: 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 600
HH N +VSRRA YLFMRVVKLLK+KLVPFI+ ILQ+LQDT+++ T+MN+AS+EL+G+EDG
Sbjct: 540 HHQNFYVSRRAGYLFMRVVKLLKSKLVPFIDKILQNLQDTLSQLTTMNFASRELTGTEDG 599
Query: 601 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFXXXXX 660
SHIFEAIG++IG+EDVP EKQSDYLS LLTPLCQQ++ L+ AK+ + E+ K
Sbjct: 600 SHIFEAIGIIIGLEDVPAEKQSDYLSLLLTPLCQQIEAGLVQAKVASSEDFPVKIANIQF 659
Query: 661 XXXXXXXLSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 720
LSKGFNERLVT+SRP IGLMFKQTLDVLL++L+ FPKVEPLR KVTSFIHRMV
Sbjct: 660 AIVAINALSKGFNERLVTASRPGIGLMFKQTLDVLLRVLIEFPKVEPLRSKVTSFIHRMV 719
Query: 721 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780
DTLG++VFPYLPKALEQLLA+SEPKEM GF+VLLNQLICKFN+ +HDIL+EV+P +A RI
Sbjct: 720 DTLGSAVFPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRI 779
Query: 781 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 840
FN+IPRD PS PG TEE+RE+ ELQR LYTFLHVIATHDLSSVFL+PKSR YLDP+MQ
Sbjct: 780 FNVIPRDGLPSRPGAVTEEMRELIELQRMLYTFLHVIATHDLSSVFLTPKSRAYLDPMMQ 839
Query: 841 LLLYTSCNHKDYLVRKVC 858
L+L TSCNHKD VRK C
Sbjct: 840 LVLNTSCNHKDITVRKAC 857
|
|
| MGI|MGI:1920442 Xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O43592 XPOT "Exportin-T" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P2A6 XPOT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R4G4 XPOT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C593 XPOT "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1B8Q8 E1B8Q8 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041210-4 xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0283119 xpot "exportin, tRNA" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| RGD|1305562 Xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7PC79 | XPOT_ARATH | No assigned EC number | 0.7435 | 0.9727 | 0.8674 | yes | no |
| Q8H3A7 | XPOT_ORYSJ | No assigned EC number | 0.5017 | 0.9523 | 0.8561 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 881 | |||
| pfam08389 | 147 | pfam08389, Xpo1, Exportin 1-like protein | 3e-32 | |
| COG5101 | 1053 | COG5101, CRM1, Importin beta-related nuclear trans | 9e-06 |
| >gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-32
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 107 PAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLD 166
P FIRNKLA L L E+P W + F D + L+ ++ R+L L +E+ D
Sbjct: 1 PKFIRNKLALALAELAKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIF--D 58
Query: 167 YPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID 226
+ RT R+KD +R Q + QI+ I+ S+ E+ + L C+ ++SWI
Sbjct: 59 FSRTPLTQQRRNRLKDLLRSQ-MPQILELLLQILENSVSAHSELLSATLKCLGSWLSWIP 117
Query: 227 INLIANDAFIPLLFELILADGLPEQFRGAAVGC 259
I LI ND + LLF+L+ R AAV C
Sbjct: 118 IGLILNDPLLNLLFQLL----SDPDLREAAVEC 146
|
The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147 |
| >gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 881 | |||
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 100.0 | |
| COG5101 | 1053 | CRM1 Importin beta-related nuclear transport recep | 100.0 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| KOG2020 | 1041 | consensus Nuclear transport receptor CRM1/MSN5 (im | 100.0 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.97 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.94 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 99.9 | |
| KOG1410 | 1082 | consensus Nuclear transport receptor RanBP16 (impo | 99.87 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 99.87 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 99.81 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 99.76 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 99.74 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.36 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 99.29 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.27 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.24 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.2 | |
| PF03810 | 77 | IBN_N: Importin-beta N-terminal domain; InterPro: | 98.94 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 98.9 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.49 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.39 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.22 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.16 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 97.77 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.73 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.86 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.75 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 96.7 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.69 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 96.68 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.23 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 96.12 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.05 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 95.73 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.53 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.3 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.1 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 94.07 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 93.62 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 93.03 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 92.79 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.47 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 92.46 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 92.05 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.99 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 91.84 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 91.83 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 91.32 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 91.21 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 91.1 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 91.04 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 91.03 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 90.65 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 90.38 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 90.16 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 89.48 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 89.12 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 89.07 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 88.98 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 88.54 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 88.26 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 87.91 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 87.87 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 87.76 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 87.7 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 86.95 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 86.79 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 84.55 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 84.5 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 83.52 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.32 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 82.61 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 82.13 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 80.78 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 80.31 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 80.19 |
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-122 Score=982.94 Aligned_cols=853 Identities=36% Similarity=0.553 Sum_probs=772.6
Q ss_pred ChhHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHhccC-ChhHHHHHHHHHHHHHHHhhccCCCHHHH
Q 002789 1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTSMSSEER 79 (881)
Q Consensus 1 m~~l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vrffa~~~L~~~I~~~w~~l~~e~~ 79 (881)
||+++|||.++++|. +|++.|+||-++++++|.+|++|++|.+++..+ +++.+||||+|||.+.++.++++++..++
T Consensus 2 mddiEqav~a~ndp~--vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~el 79 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPR--VDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNEL 79 (980)
T ss_pred chHHHHHHHhhCCCc--ccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence 899999999999994 899999999999999999999999999999876 56999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchh--HHHHHHHHHH
Q 002789 80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMV--IDMFCRVLNS 157 (881)
Q Consensus 80 ~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~vr~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~~~~--~~~~L~iL~~ 157 (881)
+.+|.++++|+.....++.+ .+ .|.||+||++++++.++..+||..|++||.|++..++.++.. .++++++|..
T Consensus 80 qlvR~sv~swlk~qvl~ne~---~~-~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 80 QLVRFSVTSWLKFQVLGNEQ---TK-LPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHhCccc---CC-CChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 99999999999987654321 12 399999999999999999999999999999999999887655 9999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC-CHHHHHHHHHHhcccccccccccccccccH
Q 002789 158 LDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSS-DFEVCTGVLDCMRRYISWIDINLIANDAFI 236 (881)
Q Consensus 158 l~eEv~~~~~~~~~~~~~r~~~lk~~~~~~~~~~i~~~~~~iL~~~~~~-~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l 236 (881)
|..|+.|.++.|++++..|++.+||+||++|+|++.+.|++++..|++. ++++...||+|+++|++|||+++++|+.++
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~ 235 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFL 235 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHH
Confidence 9999999999999999999999999999999999999999999999876 999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhcCCChhhhHHHHHHhh-hhhhccc--cCCCccHHHHHHHHHHHHHHHHHHH
Q 002789 237 PLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ-ISRVFGL--VSEDGESELVSKVAALLTGYAMEVL 313 (881)
Q Consensus 237 ~~l~~~L~~~~~~~~~~~~a~~~l~~ii~~~~~~~~k~~ll~~l~-l~~i~~~--~~~~~d~~~~~~l~~l~~~~~~~~~ 313 (881)
++++++++ .+++|.+||+|+.++++|+|+|.+|+.++++|+ ..+++.. ..+.+|.+|.++++++++.+|.+++
T Consensus 236 nLLy~fl~----ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~ 311 (980)
T KOG2021|consen 236 NLLYKFLN----IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELT 311 (980)
T ss_pred HHHHHHHh----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeee
Confidence 99999999 999999999999999999999999999998873 3333332 3456899999999999999999998
Q ss_pred HHHhhhcc-cch--hHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhh
Q 002789 314 DCVKRLNA-ENA--NEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQI 390 (881)
Q Consensus 314 ~~~~~~~~-~~~--~~~~~~~l~~~l~~ll~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~l~~Ll~~l~~km 390 (881)
.+++.+.. .+. ...+...+...+|++++++.|+++|++..+++||.+|...+|+.+.+++..+..+.+++.++++||
T Consensus 312 ~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqi 391 (980)
T KOG2021|consen 312 IIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQI 391 (980)
T ss_pred hhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHH
Confidence 77655432 222 124555666799999999999999999999999999999999988788888888999999999999
Q ss_pred ccCcccccccccCCC-CChHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHh
Q 002789 391 RYDPMYRNNLDVLDK-IGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYAL 469 (881)
Q Consensus 391 ~~p~~~~~~~~~~~~-~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~EaaL~~l~~i 469 (881)
+|++.+. ++++ .|+|+|+.|.++||+++.+++.+.+++|+.++..|.+.+..++.++...+|+.+|+|++++|.+
T Consensus 392 cydemy~----nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~l 467 (980)
T KOG2021|consen 392 CYDEMYF----NDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNL 467 (980)
T ss_pred hccHHhh----cccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 9988864 1333 5667889999999999999999999999999999999999999998899999999999999999
Q ss_pred hhcCcchhhhc------cchHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhHHHHhhcCCChHHHHHHhhcccCCCCC
Q 002789 470 GESMSEEAMRT------GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHP 543 (881)
Q Consensus 470 ~e~~~~~~~~~------~~~~l~~ll~~l~~~~~~~~~~p~v~~~~~~~igry~~~l~~~~~~L~~vL~~~l~~~gl~~~ 543 (881)
||+++++.... ..+.+..++..++.+.++.++|+.|+..|||+++||.+||...++++|.+|.+|+++||+++.
T Consensus 468 gE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ 547 (980)
T KOG2021|consen 468 GECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNK 547 (980)
T ss_pred hhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhcccc
Confidence 99998765432 335666788888888889999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHhhhcchhhHHHHHHHhhhhhhcccccCc-ccccCCCccchhHHHHHHHHHhccCCCCccchH
Q 002789 544 NVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNY-ASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQS 622 (881)
Q Consensus 544 ~~~v~~~A~~~f~~~~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~-~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~ 622 (881)
+.+||.||||+|.||+|..++++.||++.|++.+++++....-|.+ ++.....+++|+++||++|.+|+..+.|+|++.
T Consensus 548 ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qa 627 (980)
T KOG2021|consen 548 NENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQA 627 (980)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHH
Confidence 9999999999999999999999999999999999999964432333 344566799999999999999999888999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHHHhhcccCCCCCCCCcccHHHHHHHHHHHHHHHhhcC
Q 002789 623 DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF 702 (881)
Q Consensus 623 ~~l~~ll~pl~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~k~f~~~~~~~~~~~~~~if~~~~~~~~~~l~~~ 702 (881)
.|++.++.|++.+..-......-.+|++.+..++.++|.++++++++|||....+|.++++|..+|.+++++++.++..+
T Consensus 628 ay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f 707 (980)
T KOG2021|consen 628 AYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFF 707 (980)
T ss_pred HHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhc
Confidence 99999999999887666655554566666666777999999999999999998888899999999999999999999999
Q ss_pred CCChhHhhHHHHHHHHHHHhhCccccccHHHHHHHHHccCChhhHHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHh
Q 002789 703 PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFN 782 (881)
Q Consensus 703 ~~~~~ir~~~~~~~~~~v~~lg~~~~p~lp~~~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~ 782 (881)
++.+.+|+++|+++|||+.++|+.++||+|.+++.++.+.+.+|+.+|+.+++|+|++|+.++.++++++++|++.++|.
T Consensus 708 ~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfs 787 (980)
T KOG2021|consen 708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFS 787 (980)
T ss_pred cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCcCChHHHHHHHHHhhcCCCCccchhHhhHHH
Q 002789 783 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLG 862 (881)
Q Consensus 783 ~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~ 862 (881)
.+.+...| .+|++..+.-++|++|++|+.++..+++++++.++.|+..++.++.+++++|-...||..||+++ .
T Consensus 788 vi~r~a~p----~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln--~ 861 (980)
T KOG2021|consen 788 VIERIAKP----IDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLN--V 861 (980)
T ss_pred HhcccCCC----CChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHH--H
Confidence 99987644 78888999999999999999999999999999999999899999999999999999999999999 5
Q ss_pred HHHHHhhhhHH
Q 002789 863 FFSTLHLGFSI 873 (881)
Q Consensus 863 ~~~~~~~~~~~ 873 (881)
.++++++=|.|
T Consensus 862 lcnk~v~lwgg 872 (980)
T KOG2021|consen 862 LCNKIVCLWGG 872 (980)
T ss_pred HHHHHHHhcCC
Confidence 77777776655
|
|
| >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope | Back alignment and domain information |
|---|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 881 | ||||
| 3ibv_A | 980 | Karyopherin Cytosolic State Length = 980 | 5e-55 | ||
| 3a6p_A | 1204 | Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co | 3e-07 | ||
| 4hax_C | 1023 | Crystal Structure Of Crm1 Inhibitor Ratjadone A In | 1e-04 | ||
| 3m1i_C | 1049 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 4e-04 | ||
| 4gpt_C | 1060 | Crystal Structure Of Kpt251 In Complex With Crm1-ra | 4e-04 | ||
| 4hb3_C | 1023 | Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked | 4e-04 | ||
| 4hb2_C | 1023 | Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 | 4e-04 | ||
| 3vyc_A | 1033 | Crystal Structure Of Unliganded Saccharomyces Cerev | 5e-04 | ||
| 4haw_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 5e-04 | ||
| 4hay_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 5e-04 | ||
| 4hb4_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 5e-04 | ||
| 4haz_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 5e-04 | ||
| 4hb0_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 5e-04 |
| >pdb|3IBV|A Chain A, Karyopherin Cytosolic State Length = 980 | Back alignment and structure |
|
| >pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204 | Back alignment and structure |
| >pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex With Crm1(k579a)-ran-ranbp1 Length = 1023 | Back alignment and structure |
| >pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 1049 | Back alignment and structure |
| >pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 1060 | Back alignment and structure |
| >pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess Crm1 Inhibitor Leptomycin B Length = 1023 | Back alignment and structure |
| >pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 | Back alignment and structure |
| >pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae Crm1 (Xpo1p) Length = 1033 | Back alignment and structure |
| >pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548a)-ran-ranbp1 Length = 1023 | Back alignment and structure |
| >pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548e,k579q)-ran-ranbp1 Length = 1023 | Back alignment and structure |
| >pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(537dltvk541/glceq)-ran-ranbp1 Length = 1023 | Back alignment and structure |
| >pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1 Length = 1023 | Back alignment and structure |
| >pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1 Length = 1023 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 | Back alignment and structure |
|---|
Score = 480 bits (1237), Expect = e-155
Identities = 208/890 (23%), Positives = 392/890 (44%), Gaps = 61/890 (6%)
Query: 2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIV--QVQFWC 59
D+E A+ + D S ++K QA +F ++ + + +IC E S + C
Sbjct: 6 QDVENAVEAALDPSV--GPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLIC 63
Query: 60 LQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLV 119
LQTLSE VR + E +IR+SV+S + + L+ PA+I N + +L
Sbjct: 64 LQTLSEKVREWNNESNLLELQMIRDSVWSYI--------KELSFLDEPAYISNAVQHLLT 115
Query: 120 TLIYFEYPLIWSSVFVDFLPQLNKGSM--VIDMFCRVLNSLDDELISLDYPRTADELTVA 177
L YP W+ F + S + + +VL S+ DE+ +T ++
Sbjct: 116 LLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKD 175
Query: 178 ARIKDAMRQQCVEQIVRAWYDIVSMYRSS-DFEVCTGVLDCMRRYISWIDINLIANDAFI 236
+KDA+R + IV Y+++ Y ++ ++ L +++SWI+INLI N+ +
Sbjct: 176 NLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCM 235
Query: 237 PLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFG-LVSEDGES 295
LL+ + E+ R AA + +V+K+M P KLNLL L ++ F + +
Sbjct: 236 NLLYSFLQ----IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDP 291
Query: 296 ELVSKVAALLTGYAMEVLDCVKRLNAENA--NEASKKLLNEVLPSVFYVMQNCEVDTTFS 353
VA L+ +E++ + + E L + P + + + +T+ +
Sbjct: 292 NFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTA 351
Query: 354 IVQFLSGYVATMKSLS---PLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEE 410
+ FLS + +++ S L + +LE I+ +++YD + + D EE
Sbjct: 352 VFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE----SQEWDDDPDSEE 407
Query: 411 EDRMVEYRKDLLVLLRSVGRVAPEVTQVFIR----NSLANAVTFSADRNVEEVEAALTLL 466
E E RK L + ++ + + ++ +SL+ A T S + + + +E AL
Sbjct: 408 EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYET 467
Query: 467 YALGESMS-----EEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ 521
Y GE + + LS+++ ++ +++ H + LV L+Y+E + RY F
Sbjct: 468 YIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD 527
Query: 522 EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD-- 579
+ IP ++ F+ RGIH+ N V RA YLF R VK +K ++V + E+ L L D
Sbjct: 528 YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLL 587
Query: 580 --------TIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTP 631
+ +S S ++FE +G+LI ++ PE+Q+ Y SL+
Sbjct: 588 NISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINA 647
Query: 632 LCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQT 691
L + L + ++ +MAI +KGF R S A F +
Sbjct: 648 LIGKANAALSSDL-----SALENIISVYCSLMAIGNFAKGFPAR--GSEEVAWLASFNKA 700
Query: 692 LDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFL 751
D + IL E +R V R+++ +G + P +P+ + LL + E+ L
Sbjct: 701 SDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVL 760
Query: 752 VLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLY 811
++QLI + + +I + + P + RIF+ + T++ + +L+++
Sbjct: 761 SFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSA------APQGTDDAVKQNDLRKSYI 814
Query: 812 TFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFL 861
+F+ + S+ + +++ Y DP++ +L+ + + +K L
Sbjct: 815 SFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIAL 864
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 | Back alignment and structure |
|---|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 881 | ||||
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 7e-09 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-04 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 0.002 |
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 7e-09
Identities = 107/774 (13%), Positives = 236/774 (30%), Gaps = 102/774 (13%)
Query: 19 DSMLKSQAVNFCQQIKETPSICRICIEKLSLC--NIVQVQFWCLQTLSEVVRVKYTSMSS 76
D+ ++ +Q+ + P I L+ + L V+ + + +
Sbjct: 24 DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPN 83
Query: 77 EERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVD 136
+ I+ + + +S IR + ++ T+ W D
Sbjct: 84 GVTDFIKSECLNNI-------------GDSSPLIRATVGILITTIASKGELQNWP----D 126
Query: 137 FLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAW 196
LP+L C +L+S D +I + + ++
Sbjct: 127 LLPKL----------CSLLDSEDYNTCEG-------AFGALQKICEDSAEILDSDVLDRP 169
Query: 197 YD-----IVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQ 251
+ + ++ S ++ + + C+ ++I L+ + + D PE
Sbjct: 170 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEV 229
Query: 252 FRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAME 311
+ V ++ + L I ++D + + + A +
Sbjct: 230 RKNVCRALV-----MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 284
Query: 312 VLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVD--TTFSIVQFLSGYVATMKSLS 369
+ + L +++P + M+ ++D V+ + + +
Sbjct: 285 ----------PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 370 PLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVG 429
P R A Q E + D D+I ++ RK L +
Sbjct: 335 PRFHRSRTVAQQHDEDGIE---------EEDDDDDEIDDDDTISDWNLRKCSAAALDVLA 385
Query: 430 RVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV 489
V + I L + E +++E M+ +L EL+
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILV-------LGAIAEGCMQGMIPYLPELI 438
Query: 490 PMLLQTKLPCHSNRLVALVYLETVTRYMKFI--QEHTQYIPVVLAAFLDERGIHHPNVHV 547
P L+Q LV + T++RY ++ Q Y+ ++ L I N V
Sbjct: 439 PHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK--RILDSNKRV 494
Query: 548 SRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAI 607
A F + + +LVP++ IL +L +++ N +++AI
Sbjct: 495 QEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNL-----------LILYDAI 543
Query: 608 GLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINA 667
G L + +Y+ L+ PL Q+ + + K L P + + A+ +
Sbjct: 544 GTLADS-VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP-----LLECLSSVATALQS 597
Query: 668 LSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV 727
+ E + + Q + Q + + + + LG ++
Sbjct: 598 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 657
Query: 728 FPY-----LPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAI 776
+ + Q + + P+ LL L V + + P +
Sbjct: 658 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 711
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 881 | |||
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 100.0 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 100.0 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.88 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.67 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.59 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.5 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.48 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 99.33 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.3 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.38 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.86 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.37 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.19 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 95.89 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 95.67 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 91.92 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 91.4 |
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=377.05 Aligned_cols=755 Identities=14% Similarity=0.178 Sum_probs=459.5
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999994069999998889999999999961966599999984238--8158999999999999973406899888999
Q 002789 4 LEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC--NIVQVQFWCLQTLSEVVRVKYTSMSSEERNL 81 (881)
Q Consensus 4 l~~Av~~~~~p~~~~~~~~r~~A~~~L~~~k~~p~~w~~~~~ll~~~--~~~~vrffa~~~L~~~I~~~w~~l~~e~~~~ 81 (881)
+++.++++.+. ..+|++.|++|+++|++++++|+.|.++..++... .+..+|.+|+..|++.|+++|..++++.+..
T Consensus 10 l~ql~~~L~~~-~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~ 88 (888)
T d1qbkb_ 10 LQQILQLLKES-QSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDF 88 (888)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999976-39799999999999999773998999999999745799989999999999999987002399999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Q ss_conf 999999999853306888767788908999999999999998446888803499999720189-5058999999999999
Q 002789 82 IRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVIDMFCRVLNSLDD 160 (881)
Q Consensus 82 lk~~Ll~~l~~~~~~~~~~~~~~~~~~~ir~kl~~~l~~l~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~e 160 (881)
||+.++..+... ++.+|++++.+++.++.+++|..||++++.|++.+.++ ....+..+..|..+.|
T Consensus 89 Ik~~ll~~l~~~-------------~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e 155 (888)
T d1qbkb_ 89 IKSECLNNIGDS-------------SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICE 155 (888)
T ss_dssp HHHHHTTGGGCC-------------CSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHG
T ss_pred HHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999998299-------------8899999999999999871821129999999998679998999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCHHHH
Q ss_conf 863167899812799999999999888699999999999983102998899999987400423321300026-2409999
Q 002789 161 ELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN-DAFIPLL 239 (881)
Q Consensus 161 Ei~~~~~~~~~~~~~r~~~ik~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~-~~~l~~l 239 (881)
++...... +.... ....++..+.+.+. ..++.+...+++++..++....-.+... +.+++.+
T Consensus 156 ~~~~~~~~-------------~~~~~-~~~~ll~~ll~~~~---~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l 218 (888)
T d1qbkb_ 156 DSAEILDS-------------DVLDR-PLNIMIPKFLQFFK---HSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENL 218 (888)
T ss_dssp GGHHHHHT-------------C---C-CSTTTTHHHHTGGG---SSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHH
T ss_pred HHHHHHHH-------------HHHHH-HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86887607-------------78887-99999999999863---888899999999877788740388999999999988
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHH-HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986079984577899999999995399914469899871-0111-003457875179999999999999999999985
Q 002789 240 FELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTL-QISR-VFGLVSEDGESELVSKVAALLTGYAMEVLDCVK 317 (881)
Q Consensus 240 ~~~L~~~~~~~~~~~~a~~~l~eii~~~~~~~~k~~li~~l-~l~~-i~~~~~~~~d~~~~~~la~l~~~~~~~l~~~~~ 317 (881)
+.... .+++.+|..+++|+..++... +. + +...+ ++.+ ++. ...++|++.....++++.+++...
T Consensus 219 ~~~~~--~~~~~vr~~~~~~l~~l~~~~--~~-~--l~~~l~~i~~~~l~-~~~~~~e~v~~~a~ef~~~~~e~~----- 285 (888)
T d1qbkb_ 219 FALAG--DEEPEVRKNVCRALVMLLEVR--MD-R--LLPHMHNIVEYMLQ-RTQDQDENVALEACEFWLTLAEQP----- 285 (888)
T ss_dssp HTTSS--CCCSSSTTHHHHTTTTTSCSC--TT-T--TTTTTTTTTTTTTT-TTTSSCHHHHHHHHHHHCCCCSGG-----
T ss_pred HHHCC--CCCHHHHHHHHHHHHHHHHHH--HH-H--HHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHH-----
T ss_conf 87607--930677999999999899876--78-8--89988878999998-628986899998899999999716-----
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 30234415999999997898988650358764256598989999998315898947889999999999998643595454
Q 002789 318 RLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYR 397 (881)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~v~~~~~~~~~~~w~~l~~~~~l~~~~~~~~~~Ll~~l~~km~~p~~~~ 397 (881)
.........+..+++.++..+.+...++.... .....+....+ ..+..++.+.... .......++..
T Consensus 286 -----~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~i~~~~~~~~---~~~~~~~~~~~ 352 (888)
T d1qbkb_ 286 -----ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLK--GDVEEDETIPD---SEQDIRPRFHRSR---TVAQQHDEDGI 352 (888)
T ss_dssp -----GGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHT--TTSSCCTTSCC---CGGGCCCCCCCCC---CCCCCCTTC--
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHH
T ss_conf -----45899999999999999987421268899885--54665442142---5777788999999---99987401112
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 5666-678788478999999999999999999930926699999999999503468898113989999999961118603
Q 002789 398 NNLD-VLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE 476 (881)
Q Consensus 398 ~~~~-~~~~~~eed~~~f~~~R~~~~~~l~~i~~~~~~~~l~~i~~~l~~~l~~~~~~~w~~~Eaal~~l~~i~e~~~~~ 476 (881)
.... ..++.++++....+..|+....+++.++...++.+++.+.+.+.+.+.+ .+|+.+|+|+++++++++++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s---~~~~~reaa~~alg~i~eg~~~~ 429 (888)
T d1qbkb_ 353 EEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH---HEWVVKESGILVLGAIAEGCMQG 429 (888)
T ss_dssp ---CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTS---SSHHHHHHHHHHHHHHTTTSHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 102310344544300113369999999876676512999999999998875122---05689999999864355557877
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 532100289999999870999998972589999999997598885558--874999999640268889980124679999
Q 002789 477 AMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHT--QYIPVVLAAFLDERGIHHPNVHVSRRASYL 554 (881)
Q Consensus 477 ~~~~~~~~l~~ll~~l~~~~~~~~~~~~V~~~~~~~i~ry~~~l~~~~--~~L~~vL~~~l~~~gl~~~~~~v~~~a~~~ 554 (881)
. ...++++++.++. ...+++|.|+...++++|||++|+.... .++.+++..++ .++.+++++|+.+||.+
T Consensus 430 ~----~~~l~~li~~l~~--~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll--~~l~d~~~~V~~~a~~a 501 (888)
T d1qbkb_ 430 M----IPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL--KRILDSNKRVQEAACSA 501 (888)
T ss_dssp H----TTTHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHH--HHHSSSCHHHHHHHHHH
T ss_pred H----CCCCHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHH
T ss_conf 4----2120355679998--42699899999999999999998665415655455589999--88428987899989999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999984320004699999984631202355674433579952045799988787516899953068999986677999
Q 002789 555 FMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQ 634 (881)
Q Consensus 555 l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~p~~~~~~~~~~~~~~~l~Eaig~li~~~~~~~~~~~~~l~~ll~pl~~ 634 (881)
|..|++.++..+.||++.+++.+..++... ..+....+++++++++...+ +.-.+..+++.+++++.+
T Consensus 502 l~~l~~~~~~~l~p~~~~il~~l~~~l~~~-----------~~~~~~~~~~al~~l~~~~~-~~~~~~~~~~~l~~~l~~ 569 (888)
T d1qbkb_ 502 FATLEEEACTELVPYLAYILDTLVFAFSKY-----------QHKNLLILYDAIGTLADSVG-HHLNKPEYIQMLMPPLIQ 569 (888)
T ss_dssp HHHHHHHHTTSSGGGHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHHHHHHHHG-GGGCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHH
T ss_conf 999998755311357999999999998600-----------37799999999999998623-101336799999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCC---------------------------CCCCCCH--
Q ss_conf 99999976420599023568999-98999999773105689987---------------------------7886618--
Q 002789 635 QVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLV---------------------------TSSRPAI-- 684 (881)
Q Consensus 635 ~l~~~~~~~~~~~~~e~~~~~~~-l~~~~~~~~~i~k~f~~~~~---------------------------~~~~~~~-- 684 (881)
.|+....... . ... +.+...++..++.+|.++.. .......
T Consensus 570 ~~~~~~~~~~------~---~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 640 (888)
T d1qbkb_ 570 KWNMLKDEDK------D---LFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMI 640 (888)
T ss_dssp HHTTSCTTCT------T---HHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHH
T ss_pred HHHHCCCCHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 9975121068------8---999999999999986787765699999999988998999999874162011000688999
Q ss_pred -----------------HHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHH
Q ss_conf -----------------99999--99999999832299874685579999999898107021244799999997059945
Q 002789 685 -----------------GLMFK--QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK 745 (881)
Q Consensus 685 -----------------~~if~--~~~~~~~~~l~~~~~~~~ir~~~~~~~~~~i~~l~~~~~p~lp~~~~~ll~~~~~~ 745 (881)
.+... ..++++..++. ..+..+|+....++..++..++..+.||++.+++.++...+..
T Consensus 641 ~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~ 718 (888)
T d1qbkb_ 641 VALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE 718 (888)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999888998730566666658569999999967--9976899999999887787516877877999999999873867
Q ss_pred H---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6---9999999999999822005987655589999999730568888899999998898899999999999999995589
Q 002789 746 E---MAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDL 822 (881)
Q Consensus 746 ~---~~~~L~l~~~li~~~~~~~~~~l~~ll~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~ll~~i~~~~~ 822 (881)
. .......+|.++...|.++.|+++.++..++ .++.... ....++++...-++++...++
T Consensus 719 ~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~----~il~~~~-------------~~~~v~~n~~~~lgrl~~~~p 781 (888)
T d1qbkb_ 719 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV----EIINRPN-------------TPKTLLENTAITIGRLGYVCP 781 (888)
T ss_dssp GHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHH----HHHTCTT-------------CCHHHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCC-------------CCHHHHHHHHHHHHHHHHHCH
T ss_conf 78999999999999999877986505999999999----9876998-------------637899999999999998797
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 611026777378699999999851379982101276677789887333477
Q 002789 823 SSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKVCYFLGFFSTLHLGFSI 873 (881)
Q Consensus 823 ~~~l~s~~~~~~l~~~l~~~~~~~~~~~d~~~~k~~~~~~~~~~~~~~~~~ 873 (881)
..+ .++++.++...+.......|..-++.+|. |++...-..+.+
T Consensus 782 ~~~------~~~l~~~~~~~~~~l~~~~d~~ek~~~~~-g~~~~i~~~p~~ 825 (888)
T d1qbkb_ 782 QEV------APMLQQFIRPWCTSLRNIRDNEEKDSAFR-GICTMISVNPSG 825 (888)
T ss_dssp HHH------GGGGGGTHHHHHHHHTTSCCSHHHHHHHH-HHHHHHHHCGGG
T ss_pred HHH------HHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHCCHH
T ss_conf 988------86499999999997263798189999999-999999978498
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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