Citrus Sinensis ID: 002807

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------88

MAASPSSSSVAATTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDRKTSGSYDGSYPTVGQPHQTPRTSAPQQRDPQNSPQPHPQTPYYRPPEQPMVPGYGHPPPPYGNPQPLHPYQPAPVPGAPYPPPQAQQQPLPPSHEYGQPAYPGWRGPYYNAHGQQPGSFPRPPYAAPAPYTYPNQSSYYKQ

cccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccccccHHccccccEEEEccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEHcccccccEcHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

maaspssssvAATTNIMLAIYEKktssidlyrpLRNYISLTYSEREAFNLEDDLETVKQLRSdvervpdptpstrRDLLQNYFKALCLIetrfpispdkdhiNTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQiglscdrttvegrRLASHSFIAAAGAFAYLRdnaatkasvgsstTVDISVECAGMLERLMLAQAQECVFentiakgstpgvcakISRQVGLYYEEALGaltvaplkdhfdKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALteakkspkGAAAQLLDAISKLEANLNRNLDRAVKENDRVylmrvpspsslpplpafsmvkpmAMNEVLDASKEKMFaslvpdssaKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLkemdlpdsilalegnmtlpadlKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFrsqfgtrwtrpqsstLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSIldrrpiesalptlarpimsldaTEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDdilpklmtsagsYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGlnfqdrktsgsydgsyptvgqphqtprtsapqqrdpqnspqphpqtpyyrppeqpmvpgyghppppygnpqplhpyqpapvpgapypppqaqqqplppsheygqpaypgwrgpyynahgqqpgsfprppyaapapytypnqssyykq

maaspssssvaATTNIMLAIYekktssidlyrPLRNYISLTYSEREAFNLEDDLETVKqlrsdvervpdptpstrrdlLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAAtkasvgssttVDISVECAGMLERLMLAQAQECVFEntiakgstpgvCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRVYLMRvpspsslpplpaFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAeklqqgseltrvrlkemdLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELlqkeatedaqfrsqfgtrwtrpqsstlTKNLQDRLNRFAGNLkqaaesdariersvrdhsalmsildrrpiesaLPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDRKTSGSYDGSYPTVGQPHQTPRTSAPQQRDPQNSPQPHPQTPYYRPPEQPMVPGYGHPPPPYGNPQPLHPYQPAPVPGAPYPPPQAQQQPLPPSHEYGQPAYPGWRGPYYNAHGQQPGSFPRPPYAAPAPytypnqssyykq

MaaspssssvaaTTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSlelhekeeiaeeiaRLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVpspsslpplpAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNqellvqteellqkeATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICeeiaqnieaqeqLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDRKTSGSYDGSYPTVGQPHQTPRTSAPQQRDPQNSPQPHPQTPYYRPPEQPMVpgyghppppygnpqplhpyqpapvpgapypppqaqqqplppSHEYGQPAYPGWRGPYYNAHGQQPGSFprppyaapapytypNQSSYYKQ

******************************YRPLRNYISLTYSEREAFNL**************************DLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGM****************TIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIAR**********************************************VYL************************************************************************************ILALE*************************************V**ELLV*********************************************************************************TLARPIMSLDATEDAIVGALKQSL****************************KLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQR*****************************************************************************************************************WRGPYY********************************

****************MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA************ISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISA*************QLLDAISKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVL*ASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILAL*****L**DLKEEVEAVQISGGPAALEAELQQLRDLRRVNQE**************************************LQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD*****************************KQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNE********************QIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDF************************************************************************************************************************************************************************

***********ATTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA**********VDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALT**********AQLLDAISKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNL************SVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDRKT*************************************TPYYRPPEQPMVPGYGHPPPPYGNPQPLHPYQPAPVPGAPY************SHEYGQPAYPGWRGPYYNAHGQQPGSFPRPPYAAPAPYTYPNQSSYYKQ

************TTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQ**************************************************YYRPPEQPMVPGYGHPPPPYGNPQPLHPYQPAPVPGAPYPPPQAQQQPLPPSHEYGQPAYPGWRGPYYNAHGQQPGSFPRPPYAAPAPYTYPNQS*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAASPSSSSVAATTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHExxxxxxxxxxxxxxxxxxxxxKKSPKGAxxxxxxxxxxxxxxxxxxxxxxxxxNDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADLKEEVEAVQISGGPAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxEATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQxxxxxxxxxxxxxxxxxxxxxDDILPKLMTSAGSYEDLFRKEISKYDHIxxxxxxxxxxxxxxxxxxxxxxxxxxxxFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDRKTSGSYDGSYPTVGQPHQTPRTSAPQQRDPQNSPQPHPQTPYYRPPEQPMVPGYGHPPPPYGNPQPLHPYQPAPVPGAPYPPPQAQQQPLPPSHEYGQPAYPGWRGPYYNAHGQQPGSFPRPPYAAPAPYTYPNQSSYYKQ

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		878	2.2.26 [Sep-21-2011]
Q8T7K0		794	ALG-2 interacting protein	yes	no	0.889	0.983	0.291	3e-84
P79020		847	pH-response regulator pro	yes	no	0.839	0.870	0.278	1e-69
Q9QZA2		873	Programmed cell death 6-i	yes	no	0.817	0.822	0.275	1e-66
Q8WUM4		868	Programmed cell death 6-i	yes	no	0.790	0.799	0.272	1e-65
Q9WU78		869	Programmed cell death 6-i	yes	no	0.781	0.789	0.273	2e-65
P34552		882	Apoptosis-linked gene 2-i	yes	no	0.882	0.878	0.270	3e-65
Q9W6C5		867	Programmed cell death 6-i	N/A	no	0.784	0.794	0.276	8e-65
P0CM46		902	pH-response regulator pro	yes	no	0.774	0.753	0.285	2e-63
P0CM47		902	pH-response regulator pro	N/A	no	0.774	0.753	0.285	2e-63
Q5KU05		828	pH-response regulator pro	yes	no	0.804	0.852	0.285	3e-63

>sp\|Q8T7K0\|ALIX_DICDI ALG-2 interacting protein X OS=Dictyostelium discoideum GN=alxA PE=1 SV=1	Back alignment and function desciption

 Score =  314 bits (804), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 241/828 (29%), Positives = 421/828 (50%), Gaps = 47/828 (5%)

Query: 17  MLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRR 76
           ML+I  K+T  +D  +PL  YI   +S+ E+   E  + T+  LR DV  + + T  T +
Sbjct: 1   MLSIERKRTEKVDFSKPLTKYIKEQFSKAESDQHETQIATLNGLREDVRNLQERT-ETSK 59

Query: 77  DLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLFNLG 136
           +++  Y+  L  +E RFPIS +   I+   F W D+++Q+ K++  +I+ E+A+VLFN G
Sbjct: 60  EMVWKYYSILSSLELRFPISENNVRIS---FPWTDSYRQR-KSTLYSIYFERASVLFNYG 115

Query: 137 AVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVECAGM 196
           ++ SQI  S +R+ +EG + A + F  AAG F  LR+ A+       ST+ D S E    
Sbjct: 116 SIVSQIASSTNRSNIEGVKKACNQFQLAAGVFNKLREYASLHPEC--STSADFSSESLQA 173

Query: 197 LERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVT 256
           L  +MLAQAQEC++E       +  + +K++ QV  YY+     L    LK   D+ W  
Sbjct: 174 LVTIMLAQAQECIYEKASMDNLSDSILSKLAAQVAEYYDTFNQLLNSNSLKSIVDRNWNI 233

Query: 257 HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKS-PKGAAAQLLDAI 315
              +K+ L+ A + Y ++  L +  +  E+++RL   +  + ++K +  K A  +L + +
Sbjct: 234 TATVKSYLYKAISLYCHAKGLEQVSQFGEQVSRLMIAVDNINQSKVNLAKTAPIELKEIV 293

Query: 316 SKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMAMNEV--LDASKEKMF 373
            +   ++ R  + A K+ND +Y   +P    L P+    + K + + E+  +D      F
Sbjct: 294 ERYVISITRYCESAKKDNDTIYHDTIPPAHKLTPIEKKPLAKALPLPEINFVDP-----F 348

Query: 374 ASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLP 433
            SLVP S  +  + Y +  + ++R + + ++  ++  +  L  M LP SI AL+  + +P
Sbjct: 349 NSLVPFSVKEDSAYYNDQKETLLRKELDNIEFHNQSAKASLLSMGLPGSIEALD--VGVP 406

Query: 434 ADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGT 493
             LKE++  V    G + +   L+ ++ L   +  + +    LL+KE  ED   R+ +G 
Sbjct: 407 VALKEKMNVVTNEQGVSNITRLLENIQQLSDEDSAICLSAGNLLKKEEDEDNLMRATYGA 466

Query: 494 RWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDH-SALMSILDRRPIESALP 552
           +W R  S TLT NL     ++  +L+ + +SD+ I +   DH +++  + ++  I + LP
Sbjct: 467 QWHRTPSYTLTANLTQDYAKYTSHLQHSTKSDSFIRKKFEDHKNSIQELENQTEIIALLP 526

Query: 553 TLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGS 612
           T      +L + + A + +L   +  L+ L A R  + + LK + +KDDI  KL++    
Sbjct: 527 T-----NNLPSGKIAEIASLTVLMNDLDALMANRESIAEKLKNLCKKDDITLKLLSPQKD 581

Query: 613 YEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRAS-REKCYKQ 671
              ++ +EI KY+ +   + ++   Q++L+  I+ +NE+F+   N +  + + RE+  ++
Sbjct: 582 KSLIYAEEIQKYEPLQMSLNESFLKQQKLIEDIRKENEKFT---NQKSKQGNQREEILQK 638

Query: 672 IQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQM-A 730
              A   Y E+K N++EG +FY+  Q+ +     +C DF   R     E IE ++RQ+ A
Sbjct: 639 YANAYKVYNELKANLDEGTQFYLNFQEILNKFLNRCKDFTTGRE---NEKIE-LKRQIEA 694

Query: 731 GLNFQDRKTSGSYDGSYPTVGQPHQTPRTSAPQQRDPQNSPQPHPQTPYYRPPEQPMVPG 790
           G+N     TS S     P++    Q+P  + P Q    +SPQ H      +  +Q  VP 
Sbjct: 695 GVNPHSPLTSPS-----PSL----QSPVNNYPNQF---SSPQYHTSPNQQQQQQQQYVPS 742

Query: 791 YGHPPPPYGNPQPLHPYQPAPVPGAPYPPPQAQQQPLPPSHEYGQPAY 838
              PPP Y       PYQP    G P PPPQ+   P PP      P Y
Sbjct: 743 -SQPPPQYS--YNPQPYQPPQQFGGPLPPPQSFSAPPPPQSFTAPPPY 787

Unknown. Required for development but not for cell death.
Dictyostelium discoideum (taxid: 44689)

>sp\|P79020\|PALA_EMENI pH-response regulator protein palA/RIM20 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=palA PE=1 SV=3	Back alignment and function description

>sp\|Q9QZA2\|PDC6I_RAT Programmed cell death 6-interacting protein OS=Rattus norvegicus GN=Pdcd6ip PE=1 SV=2	Back alignment and function description

>sp\|Q8WUM4\|PDC6I_HUMAN Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	Back alignment and function description

>sp\|Q9WU78\|PDC6I_MOUSE Programmed cell death 6-interacting protein OS=Mus musculus GN=Pdcd6ip PE=1 SV=3	Back alignment and function description

>sp\|P34552\|ALX1_CAEEL Apoptosis-linked gene 2-interacting protein X 1 OS=Caenorhabditis elegans GN=alx-1 PE=1 SV=3	Back alignment and function description

>sp\|Q9W6C5\|PDC6I_XENLA Programmed cell death 6-interacting protein OS=Xenopus laevis GN=pdcd6ip PE=1 SV=1	Back alignment and function description

>sp\|P0CM46\|PALA_CRYNJ pH-response regulator protein palA/RIM20 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RIM20 PE=3 SV=1	Back alignment and function description

>sp\|P0CM47\|PALA_CRYNB pH-response regulator protein palA/RIM20 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RIM20 PE=3 SV=1	Back alignment and function description

>sp\|Q5KU05\|PALA_ASPOR pH-response regulator protein palA/RIM20 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=palA PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		878
224099441		869	predicted protein [Populus trichocarpa]	0.989	1.0	0.842	0.0
356536236		872	PREDICTED: ALG-2 interacting protein X-l	0.972	0.979	0.807	0.0
225424148		873	PREDICTED: ALG-2 interacting protein X [	0.988	0.994	0.807	0.0
449465920		885	PREDICTED: ALG-2 interacting protein X-l	0.972	0.964	0.793	0.0
224111560		861	predicted protein [Populus trichocarpa]	0.976	0.995	0.833	0.0
46389755		876	ALG2-interacting protein X [Nicotiana ta	0.986	0.988	0.775	0.0
356574264		872	PREDICTED: ALG-2 interacting protein X-l	0.862	0.868	0.834	0.0
297737734		822	unnamed protein product [Vitis vinifera]	0.933	0.997	0.777	0.0
297849938		845	hydroxyproline-rich glycoprotein family	0.956	0.994	0.756	0.0
15218061		846	programmed cell death 6-interacting prot	0.957	0.994	0.752	0.0

>gi\|224099441\|ref\|XP_002311485.1\| predicted protein [Populus trichocarpa] gi\|222851305\|gb\|EEE88852.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1446 bits (3743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/878 (84%), Positives = 780/878 (88%), Gaps = 9/878 (1%)

Query: 1   MAASPSSSSVAATTNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQL 60
           MA   SS+S A  TNIMLAI+EKKT+S+DLYRPLRNYIS+ YSEREA NLEDDL+TVKQ 
Sbjct: 1   MAGQSSSTSTA--TNIMLAIHEKKTTSLDLYRPLRNYISMFYSEREAQNLEDDLQTVKQY 58

Query: 61  RSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKAS 120
           RSD+ER PDP+P++RRDLLQ YFKALCLIETRFPISPD DHINTV F+W+DAFKQKQKAS
Sbjct: 59  RSDLERQPDPSPTSRRDLLQKYFKALCLIETRFPISPDSDHINTVTFVWYDAFKQKQKAS 118

Query: 121 QQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKAS 180
           QQNIHLEKAAVLFNLGAVYSQ+GLS DR TVEGRR A H+FIAAAG+FA+LRDNAATKAS
Sbjct: 119 QQNIHLEKAAVLFNLGAVYSQMGLSFDRATVEGRRQAIHAFIAAAGSFAFLRDNAATKAS 178

Query: 181 VGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGA 240
           +G+STTVD+SVEC GMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEAL A
Sbjct: 179 MGTSTTVDLSVECVGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAA 238

Query: 241 LTVAPLKDHFDKAWVTHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEA 300
           L VA LKDHFDK W+ HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKS  S L E 
Sbjct: 239 LNVASLKDHFDKGWIAHVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSASSTLAEV 298

Query: 301 KKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKPMA 360
           KKS +GAAAQ+LDAISKLEAN+NRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVK M 
Sbjct: 299 KKSSRGAAAQILDAISKLEANINRNLDRAVKENDRVYLMRVPSPSSLPPLPAFSMVKIMP 358

Query: 361 MNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLP 420
           MNEVLDASKEKMFASLVPDSSAKALSRYTEMVDD+IRTQAEKLQQGSELTRVRLKEMDLP
Sbjct: 359 MNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDIIRTQAEKLQQGSELTRVRLKEMDLP 418

Query: 421 DSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKE 480
           DSIL+LEGN TLP DLKE+VEAVQISGGPA LEAELQQL DLRRVN ELLVQTEELLQKE
Sbjct: 419 DSILSLEGNFTLPTDLKEDVEAVQISGGPAGLEAELQQLMDLRRVNHELLVQTEELLQKE 478

Query: 481 ATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMS 540
           ATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFA NLKQAA+SDARIERSVRDHSALMS
Sbjct: 479 ATEDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAANLKQAADSDARIERSVRDHSALMS 538

Query: 541 ILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKD 600
           ILDRRPIESALPTLARPIMSLDA EDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKD
Sbjct: 539 ILDRRPIESALPTLARPIMSLDANEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKD 598

Query: 601 DILPKLMTSAGSYEDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLED 660
           D+LPKLMTS GSYEDLFRKEI+KYD I E+IAQNIEAQEQLL+QIQAQNEEFSA+FNLED
Sbjct: 599 DVLPKLMTSTGSYEDLFRKEIAKYDPIREDIAQNIEAQEQLLLQIQAQNEEFSAVFNLED 658

Query: 661 YRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCRE 720
           Y+ASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCRE
Sbjct: 659 YKASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCRE 718

Query: 721 MIEDVQRQMAGLNFQDRKTSGSYDGSYPTVGQPHQTPRTSAPQQRDPQNSPQPHPQTPYY 780
           MIEDVQRQMAGL+FQDRK +GSY  SYP V QPHQTPR+S+    DPQN P P  QT YY
Sbjct: 719 MIEDVQRQMAGLSFQDRKNTGSY--SYPAVNQPHQTPRSSSQPPSDPQNVPHPRSQTSYY 776

Query: 781 RPPEQPMVPGYGHPPPPYGNPQPLHPYQPAPVPGAPYPPPQAQQQPLPPSHEYGQPAYPG 840
           +P EQ  +P Y HPP             P  +P AP  P    Q   P S EYGQPAYPG
Sbjct: 777 QPHEQSTMPAYAHPP---SPYTTPQQPPPYHIPPAPGAPYPPPQVQQPTSQEYGQPAYPG 833

Query: 841 WRGPYYNAHGQQPGSFPRPPYAAPAPYTYPNQSSYYKQ 878
           WRGPYYNAHGQQ GS PRPPY  P P  YP    YYKQ
Sbjct: 834 WRGPYYNAHGQQSGSLPRPPYTIPGP--YPPHQGYYKQ 869

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356536236\|ref\|XP_003536645.1\| PREDICTED: ALG-2 interacting protein X-like [Glycine max]	Back alignment and taxonomy information

>gi\|225424148\|ref\|XP_002283981.1\| PREDICTED: ALG-2 interacting protein X [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449465920\|ref\|XP_004150675.1\| PREDICTED: ALG-2 interacting protein X-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224111560\|ref\|XP_002315900.1\| predicted protein [Populus trichocarpa] gi\|222864940\|gb\|EEF02071.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|46389755\|dbj\|BAD15108.1\| ALG2-interacting protein X [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|356574264\|ref\|XP_003555270.1\| PREDICTED: ALG-2 interacting protein X-like [Glycine max]	Back alignment and taxonomy information

>gi\|297737734\|emb\|CBI26935.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297849938\|ref\|XP_002892850.1\| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi\|297338692\|gb\|EFH69109.1\| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15218061\|ref\|NP_172965.1\| programmed cell death 6-interacting protein [Arabidopsis thaliana] gi\|332191149\|gb\|AEE29270.1\| programmed cell death 6-interacting protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		878
TAIR\|locus:2037693		846	AT1G15130 [Arabidopsis thalian	0.871	0.904	0.753	1.80000000023e-315
DICTYBASE\|DDB_G0275451		794	alxA "ALG-2 interacting protei	0.848	0.938	0.277	3.2e-79
ZFIN\|ZDB-GENE-040426-2678		873	pdcd6ip "programmed cell death	0.842	0.847	0.267	9.8e-66
RGD\|68357		873	Pdcd6ip "programmed cell death	0.843	0.848	0.261	1.3e-63
UNIPROTKB\|Q9QZA2		873	Pdcd6ip "Programmed cell death	0.843	0.848	0.261	1.3e-63
MGI\|MGI:1333753		869	Pdcd6ip "programmed cell death	0.841	0.850	0.259	2.4e-62
UNIPROTKB\|Q8WUM4		868	PDCD6IP "Programmed cell death	0.846	0.855	0.262	2.5e-62
UNIPROTKB\|E1BKM4		914	PDCD6IP "Uncharacterized prote	0.846	0.812	0.258	2.3e-61
UNIPROTKB\|F1NKK1		893	PDCD6IP "Uncharacterized prote	0.841	0.827	0.261	1e-60
WB\|WBGene00007010		882	alx-1 [Caenorhabditis elegans	0.847	0.843	0.263	3.5e-58

TAIR\|locus:2037693 AT1G15130 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2968 (1049.8 bits), Expect = 1.8e-315, Sum P(3) = 1.8e-315
 Identities = 582/772 (75%), Positives = 652/772 (84%)

Query:    14 TNIMLAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPS 73
             +N+MLAI+EKKTSS+DLYRPLRNY++ TYSEREA  ++DDLET+KQLRSD+ERV DP+P+
Sbjct:     7 SNLMLAIHEKKTSSVDLYRPLRNYVTFTYSEREAQLIDDDLETLKQLRSDIERVSDPSPA 66

Query:    74 TRRDLLQNYFKALCLIETRFPISPDKDHINTVMFLWFDAFKQKQKASQQNIHLEKAAVLF 133
              RRDLL +Y+K LCL+ETRFPISPDKDH+N V F+W+DAFKQK KA+QQNIHLEKAAVLF
Sbjct:    67 ARRDLLISYYKVLCLVETRFPISPDKDHVNAVSFVWYDAFKQKHKATQQNIHLEKAAVLF 126

Query:   134 NLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAATKASVGSSTTVDISVEC 193
             NLGA YSQIGL  DRTTV+GRR ASH+F+AAAGAFA+LRDN + KA++G STTVD+SVEC
Sbjct:   127 NLGASYSQIGLGHDRTTVDGRRQASHAFMAAAGAFAHLRDNESIKATIGPSTTVDVSVEC 186

Query:   194 AGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKA 253
              GMLERLM+AQAQECVFENTIAKGSTPGV AKI+RQVG++YEEAL AL ++PLKDHFDK 
Sbjct:   187 VGMLERLMVAQAQECVFENTIAKGSTPGVSAKIARQVGIFYEEALSALIISPLKDHFDKG 246

Query:   254 WVTHVQLKAALFYAEACYRYSXXXXXXXXXXXXXXRLKSGISALTEAKKSPKGAAAQLLD 313
             W++HVQLKAALFY EAC+RY               RL+SG S L EAKKS +GA AQL++
Sbjct:   247 WISHVQLKAALFYGEACFRYGKELHEKEEIAEEIARLRSGASRLAEAKKSSRGAPAQLIE 306

Query:   314 AISKLEANLNRNLDRAVKENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDASKEKMF 373
             A++ LE+++N NLDRAVKENDRVYLMRV          AFSMVKPM M ++LDASKEKMF
Sbjct:   307 AMNTLESSINGNLDRAVKENDRVYLMRVPSPSSLSPLPAFSMVKPMNMTDILDASKEKMF 366

Query:   374 ASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLP 433
             + LVPDSSAKALSRYTEMVDDVIRTQAE+LQQ SELTRVRLKEMDLPDSILA++GN  LP
Sbjct:   367 SILVPDSSAKALSRYTEMVDDVIRTQAERLQQASELTRVRLKEMDLPDSILAVDGNSALP 426

Query:   434 ADLKEEVEAVQISGGPAALEAELQQLRDLRRVNXXXXXXXXXXXXXXATEDAQFRSQFGT 493
              DLKE+VEAVQISGGPA LEAELQQLRDL+RVN              ATED+QFRSQFGT
Sbjct:   427 VDLKEDVEAVQISGGPAGLEAELQQLRDLKRVNQELLVHTEELLQKEATEDSQFRSQFGT 486

Query:   494 RWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPT 553
             RWTRPQSSTLTKNLQDRLNRFA NLKQA ESD +IERSVRD+SALMSILDRRPIESA+PT
Sbjct:   487 RWTRPQSSTLTKNLQDRLNRFAANLKQAGESDVKIERSVRDNSALMSILDRRPIESAVPT 546

Query:   554 LARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSY 613
             LARPIMSLDATEDAIVG LKQSLRQLE LGAQRAGLEDMLKEMKRKDDILPKLMT  GSY
Sbjct:   547 LARPIMSLDATEDAIVGTLKQSLRQLENLGAQRAGLEDMLKEMKRKDDILPKLMTITGSY 606

Query:   614 EDLFRKEISKYDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQ 673
             ED+FRKEISKYDHIC            LLMQIQAQNEEFS IFNLEDY+AS+EKCYKQIQ
Sbjct:   607 EDMFRKEISKYDHICEDISQNIEVQEQLLMQIQAQNEEFSTIFNLEDYKASKEKCYKQIQ 666

Query:   674 AAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLN 733
             AAI KYREIKENINEGLKFYVTLQDAITN+KQQCSDFVMTR+IQCR+MIEDVQRQM+GL+
Sbjct:   667 AAIMKYREIKENINEGLKFYVTLQDAITNVKQQCSDFVMTRSIQCRDMIEDVQRQMSGLS 726

Query:   734 FQDRKTSGSYDGSYPTVGQPHQTPRTSAPQQRDPQNSPQPHPQTPYYRPPEQ 785
             FQD ++SG Y    P+V   HQ   +S P   + QN   PHP  PYYRPPEQ
Sbjct:   727 FQDHRSSGPY----PSV---HQPTASSPPPPPETQNPSHPHPHAPYYRPPEQ 771

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

DICTYBASE\|DDB_G0275451 alxA "ALG-2 interacting protein X" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2678 pdcd6ip "programmed cell death 6 interacting protein" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|68357 Pdcd6ip "programmed cell death 6 interacting protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9QZA2 Pdcd6ip "Programmed cell death 6-interacting protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1333753 Pdcd6ip "programmed cell death 6 interacting protein" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WUM4 PDCD6IP "Programmed cell death 6-interacting protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BKM4 PDCD6IP "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NKK1 PDCD6IP "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

WB\|WBGene00007010 alx-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VIII1124	hypothetical protein (869 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00061076	hypothetical protein (253 aa)	•	•	•	0.847
	grail3.0145004603	hypothetical protein (207 aa)	•	•	•	0.844

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		878
cd09238		339	cd09238, V_Alix_like_1, Protein-interacting V-doma	1e-175
cd09246		353	cd09246, BRO1_Alix_like_1, Protein-interacting, N-	1e-160
pfam03097		374	pfam03097, BRO1, BRO1-like domain	1e-130
smart01041		381	smart01041, BRO1, BRO1-like domain	1e-104
pfam13949		292	pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bi	1e-82
cd08915		342	cd08915, V_Alix_like, Protein-interacting V-domain	4e-82
cd09241		355	cd09241, BRO1_ScRim20-like, Protein-interacting, N	3e-69
cd09034		345	cd09034, BRO1_Alix_like, Protein-interacting Bro1-	1e-66
cd09240		346	cd09240, BRO1_Alix, Protein-interacting, N-termina	2e-60
cd09242		348	cd09242, BRO1_ScBro1_like, Protein-interacting, N-	6e-59
cd09236		353	cd09236, V_AnPalA_UmRIM20_like, Protein-interactin	4e-45
cd09239		361	cd09239, BRO1_HD-PTP_like, Protein-interacting, N-	3e-44
cd09235		339	cd09235, V_Alix, Middle V-domain of mammalian Alix	1e-39
cd09244		350	cd09244, BRO1_Rhophilin, Protein-interacting Bro1-	8e-39
cd09249		385	cd09249, BRO1_Rhophilin_2, Protein-interacting Bro	5e-34
cd09248		384	cd09248, BRO1_Rhophilin_1, Protein-interacting Bro	1e-31
cd09234		337	cd09234, V_HD-PTP_like, Protein-interacting V-doma	1e-24
cd09237		356	cd09237, V_ScBro1_like, Protein-interacting V-doma	2e-15
cd09247		346	cd09247, BRO1_Alix_like_2, Protein-interacting Bro	2e-10
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-08
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-08
pfam07223		357	pfam07223, DUF1421, Protein of unknown function (D	6e-08
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-08
cd09243		353	cd09243, BRO1_Brox_like, Protein-interacting Bro1-	8e-08
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	1e-07
pfam14179		110	pfam14179, YppG, YppG-like protein	3e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
pfam07223		357	pfam07223, DUF1421, Protein of unknown function (D	6e-07
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-07
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	8e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-06
PRK03427		333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-06
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
PRK14086		617	PRK14086, dnaA, chromosomal replication initiation	1e-05
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-05
PHA03369		663	PHA03369, PHA03369, capsid maturational protease;	2e-05
pfam02948		174	pfam02948, Amelogenin, Amelogenin	2e-05
pfam07223		357	pfam07223, DUF1421, Protein of unknown function (D	3e-05
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
pfam04554		57	pfam04554, Extensin_2, Extensin-like region	8e-05
pfam07777		189	pfam07777, MFMR, G-box binding protein MFMR	1e-04
smart00818		165	smart00818, Amelogenin, Amelogenins, cell adhesion	1e-04
pfam07223		357	pfam07223, DUF1421, Protein of unknown function (D	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PRK03427		333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
pfam11029		136	pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP	2e-04
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-04
pfam04731		135	pfam04731, Caudal_act, Caudal like protein activat	2e-04
pfam12868		135	pfam12868, DUF3824, Domain of unknwon function (DU	2e-04
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-04
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-04
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-04
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	5e-04
pfam10349		111	pfam10349, WWbp, WW-domain ligand protein	5e-04
PHA03377		1000	PHA03377, PHA03377, EBNA-3C; Provisional	5e-04
pfam12273		124	pfam12273, RCR, Chitin synthesis regulation, resis	5e-04
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	6e-04
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
pfam04652		315	pfam04652, DUF605, Vta1 like	7e-04
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	8e-04
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PHA03378		991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
PHA03377		1000	PHA03377, PHA03377, EBNA-3C; Provisional	0.001
pfam04652		315	pfam04652, DUF605, Vta1 like	0.001
PRK03427		333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.002
pfam02948		174	pfam02948, Amelogenin, Amelogenin	0.002
pfam07777		189	pfam07777, MFMR, G-box binding protein MFMR	0.002
pfam10349		111	pfam10349, WWbp, WW-domain ligand protein	0.002
pfam13908		177	pfam13908, Shisa, Wnt and FGF inhibitory regulator	0.002
PTZ00395		1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	0.002
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
pfam09606		768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.002
pfam13388		422	pfam13388, DUF4106, Protein of unknown function (D	0.002
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
pfam02948		174	pfam02948, Amelogenin, Amelogenin	0.003
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
pfam09606		768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.003
cd09245		413	cd09245, BRO1_UmRIM23-like, Protein-interacting, B	0.003
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK10263		1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.004
smart00818		165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004
pfam04652		315	pfam04652, DUF605, Vta1 like	0.004
TIGR01628		562	TIGR01628, PABP-1234, polyadenylate binding protei	0.004
PRK00404		141	PRK00404, tatB, sec-independent translocase; Provi	0.004
pfam04621		336	pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t	0.004

>gnl\|CDD\|185751 cd09238, V_Alix_like_1, Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily	Back alignment and domain information

 Score =  509 bits (1313), Expect = e-175
 Identities = 182/339 (53%), Positives = 254/339 (74%), Gaps = 2/339 (0%)

Query: 378 PDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKEMDLPDSILALEGNMTLPADL- 436
           P+SSAKALS+YTEMVD++IRT+A++L   S+  RV L+EM+LP++++AL+G  +LP DL 
Sbjct: 1   PESSAKALSKYTEMVDELIRTEADRLAAASDEARVALREMELPETLIALDGGASLPGDLG 60

Query: 437 -KEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRW 495
             EEVEAVQISGG AALE EL +LR+LRRV  ELL   +E L+ EATED+  R+Q+GT W
Sbjct: 61  LDEEVEAVQISGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAW 120

Query: 496 TRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILDRRPIESALPTLA 555
           TRP S+TLTKNL +RLNRF  NL+QA +SD  + R + D    M ILD  P  +A PTL 
Sbjct: 121 TRPPSATLTKNLWERLNRFRVNLEQAGDSDESLRRRIEDAMDGMLILDDEPAAAAAPTLR 180

Query: 556 RPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSYED 615
            P++S D  + +IVG L+ +L +LE LG +RAG+EDM+K +KR D+IL K+M + GSY+ 
Sbjct: 181 APMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDA 240

Query: 616 LFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAA 675
           LF++E+ KYD + E +++NI +Q+ LL +++A NE+FS IF++E +RA+ E    QI+AA
Sbjct: 241 LFKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQIFDVEGWRAATESHATQIRAA 300

Query: 676 IAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTR 714
           +AKYRE++E + EGL+FY   Q+A+  +KQ+C DFVMTR
Sbjct: 301 VAKYRELREGMEEGLRFYSGFQEAVRRLKQECEDFVMTR 339

This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addition to this V-domain, members of the V_Alix_Rim20_Bro1_like superfamily also have an N-terminal Bro1-like domain, which binds components of the ESCRT-III complex. The Bro1-like domains of Alix and HD-PTP can also bind to human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Many members of the V_Alix_like superfamily also have a proline-rich region (PRR). Length = 339

>gnl\|CDD\|185769 cd09246, BRO1_Alix_like_1, Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily	Back alignment and domain information

>gnl\|CDD\|217365 pfam03097, BRO1, BRO1-like domain	Back alignment and domain information

>gnl\|CDD\|214990 smart01041, BRO1, BRO1-like domain	Back alignment and domain information

>gnl\|CDD\|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV	Back alignment and domain information

>gnl\|CDD\|185746 cd08915, V_Alix_like, Protein-interacting V-domain of mammalian Alix and related domains	Back alignment and domain information

>gnl\|CDD\|185764 cd09241, BRO1_ScRim20-like, Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins	Back alignment and domain information

>gnl\|CDD\|185761 cd09034, BRO1_Alix_like, Protein-interacting Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>gnl\|CDD\|185763 cd09240, BRO1_Alix, Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>gnl\|CDD\|185765 cd09242, BRO1_ScBro1_like, Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins	Back alignment and domain information

>gnl\|CDD\|185749 cd09236, V_AnPalA_UmRIM20_like, Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins	Back alignment and domain information

>gnl\|CDD\|185762 cd09239, BRO1_HD-PTP_like, Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains	Back alignment and domain information

>gnl\|CDD\|185748 cd09235, V_Alix, Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules	Back alignment and domain information

>gnl\|CDD\|185767 cd09244, BRO1_Rhophilin, Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains	Back alignment and domain information

>gnl\|CDD\|185772 cd09249, BRO1_Rhophilin_2, Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2	Back alignment and domain information

>gnl\|CDD\|185771 cd09248, BRO1_Rhophilin_1, Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1	Back alignment and domain information

>gnl\|CDD\|185747 cd09234, V_HD-PTP_like, Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains	Back alignment and domain information

>gnl\|CDD\|185750 cd09237, V_ScBro1_like, Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains	Back alignment and domain information

>gnl\|CDD\|185770 cd09247, BRO1_Alix_like_2, Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|185766 cd09243, BRO1_Brox_like, Protein-interacting Bro1-like domain of human Brox1 and related proteins	Back alignment and domain information

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|222579 pfam14179, YppG, YppG-like protein	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|223061 PHA03369, PHA03369, capsid maturational protease; Provisional	Back alignment and domain information

>gnl\|CDD\|217298 pfam02948, Amelogenin, Amelogenin	Back alignment and domain information

>gnl\|CDD\|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|218146 pfam04554, Extensin_2, Extensin-like region	Back alignment and domain information

>gnl\|CDD\|219569 pfam07777, MFMR, G-box binding protein MFMR	Back alignment and domain information

>gnl\|CDD\|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth	Back alignment and domain information

>gnl\|CDD\|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2)	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|218232 pfam04731, Caudal_act, Caudal like protein activation region	Back alignment and domain information

>gnl\|CDD\|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|220708 pfam10349, WWbp, WW-domain ligand protein	Back alignment and domain information

>gnl\|CDD\|177614 PHA03377, PHA03377, EBNA-3C; Provisional	Back alignment and domain information

>gnl\|CDD\|221501 pfam12273, RCR, Chitin synthesis regulation, resistance to Congo red	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|223065 PHA03378, PHA03378, EBNA-3B; Provisional	Back alignment and domain information

>gnl\|CDD\|177614 PHA03377, PHA03377, EBNA-3C; Provisional	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional	Back alignment and domain information

>gnl\|CDD\|217298 pfam02948, Amelogenin, Amelogenin	Back alignment and domain information

>gnl\|CDD\|219569 pfam07777, MFMR, G-box binding protein MFMR	Back alignment and domain information

>gnl\|CDD\|220708 pfam10349, WWbp, WW-domain ligand protein	Back alignment and domain information

>gnl\|CDD\|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator	Back alignment and domain information

>gnl\|CDD\|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	Back alignment and domain information

>gnl\|CDD\|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|217298 pfam02948, Amelogenin, Amelogenin	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	Back alignment and domain information

>gnl\|CDD\|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional	Back alignment and domain information

>gnl\|CDD\|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family	Back alignment and domain information

>gnl\|CDD\|166942 PRK00404, tatB, sec-independent translocase; Provisional	Back alignment and domain information

>gnl\|CDD\|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		878
KOG2220		714	consensus Predicted signal transduction protein [G	100.0
cd09241		355	BRO1_ScRim20-like Protein-interacting, N-terminal,	100.0
cd09239		361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	100.0
cd09246		353	BRO1_Alix_like_1 Protein-interacting, N-terminal,	100.0
cd09240		346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	100.0
PF03097		377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	100.0
cd09242		348	BRO1_ScBro1_like Protein-interacting, N-terminal,	100.0
cd09244		350	BRO1_Rhophilin Protein-interacting Bro1-like domai	100.0
cd09248		384	BRO1_Rhophilin_1 Protein-interacting Bro1-like dom	100.0
cd09034		345	BRO1_Alix_like Protein-interacting Bro1-like domai	100.0
cd09238		339	V_Alix_like_1 Protein-interacting V-domain of an u	100.0
cd09236		353	V_AnPalA_UmRIM20_like Protein-interacting V-domain	100.0
cd09235		339	V_Alix Middle V-domain of mammalian Alix and relat	100.0
cd09249		385	BRO1_Rhophilin_2 Protein-interacting Bro1-like dom	100.0
cd08915		342	V_Alix_like Protein-interacting V-domain of mammal	100.0
cd09234		337	V_HD-PTP_like Protein-interacting V-domain of mamm	100.0
cd09237		356	V_ScBro1_like Protein-interacting V-domain of Sacc	100.0
cd09243		353	BRO1_Brox_like Protein-interacting Bro1-like domai	100.0
cd09247		346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	100.0
cd09245		413	BRO1_UmRIM23-like Protein-interacting, Bro1-like d	100.0
PF13949		296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	100.0
KOG2220		714	consensus Predicted signal transduction protein [G	98.97
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.94
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.2
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	96.87
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	96.68
KOG4368		757	consensus Predicted RNA binding protein, contains	96.67
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	96.57
PHA03247		3151	large tegument protein UL36; Provisional	96.2
KOG2199		462	consensus Signal transducing adaptor protein STAM/	96.18
PHA03247		3151	large tegument protein UL36; Provisional	96.05
KOG0260		1605	consensus RNA polymerase II, large subunit [Transc	95.55
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	95.46
KOG4302		660	consensus Microtubule-associated protein essential	95.38
PRK04778		569	septation ring formation regulator EzrA; Provision	95.37
PF13514		1111	AAA_27: AAA domain	95.11
KOG4368		757	consensus Predicted RNA binding protein, contains	95.08
KOG4849		498	consensus mRNA cleavage factor I subunit/CPSF subu	94.91
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	94.72
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	94.64
KOG0132		894	consensus RNA polymerase II C-terminal domain-bind	94.5
KOG0260		1605	consensus RNA polymerase II, large subunit [Transc	94.13
KOG4672		487	consensus Uncharacterized conserved low complexity	93.81
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	93.77
KOG0996		1293	consensus Structural maintenance of chromosome pro	93.16
KOG0132		894	consensus RNA polymerase II C-terminal domain-bind	93.08
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	92.91
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	92.76
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.57
KOG1923		830	consensus Rac1 GTPase effector FRL [Signal transdu	92.03
KOG4302		660	consensus Microtubule-associated protein essential	92.03
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.03
PRK04778		569	septation ring formation regulator EzrA; Provision	91.56
KOG4673		961	consensus Transcription factor TMF, TATA element m	91.29
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	91.19
KOG1984		1007	consensus Vesicle coat complex COPII, subunit SFB3	91.07
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	90.71
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	90.51
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	90.26
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	90.25
KOG1923		830	consensus Rac1 GTPase effector FRL [Signal transdu	89.54
KOG1676		600	consensus K-homology type RNA binding proteins [RN	89.4
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	89.37
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	89.14
PRK10263		1355	DNA translocase FtsK; Provisional	89.13
KOG1676		600	consensus K-homology type RNA binding proteins [RN	88.58
PF13949		296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	88.39
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	88.14
KOG2460		593	consensus Signal recognition particle, subunit Srp	87.13
PRK10263		1355	DNA translocase FtsK; Provisional	87.12
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	86.73
PF04652		380	DUF605: Vta1 like; InterPro: IPR006745 This family	86.56
KOG0933		1174	consensus Structural maintenance of chromosome pro	86.06
KOG0971		1243	consensus Microtubule-associated protein dynactin	85.83
PRK02224		880	chromosome segregation protein; Provisional	85.8
KOG1830		518	consensus Wiskott Aldrich syndrome proteins [Cytos	85.14
KOG4672		487	consensus Uncharacterized conserved low complexity	84.85
KOG1830		518	consensus Wiskott Aldrich syndrome proteins [Cytos	84.84
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	84.78
PHA03378		991	EBNA-3B; Provisional	84.77
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	84.48
cd09236		353	V_AnPalA_UmRIM20_like Protein-interacting V-domain	84.42
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	84.11
PHA03378		991	EBNA-3B; Provisional	83.99
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	83.97
KOG0971		1243	consensus Microtubule-associated protein dynactin	83.12
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	83.05
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	82.7
PF01213		312	CAP_N: Adenylate cyclase associated (CAP) N termin	81.99
PRK10869		553	recombination and repair protein; Provisional	81.98
PRK03918		880	chromosome segregation protein; Provisional	81.95
cd02679		79	MIT_spastin MIT: domain contained within Microtubu	81.71
cd02682		75	MIT_AAA_Arch MIT: domain contained within Microtub	81.19
PHA03377		1000	EBNA-3C; Provisional	81.08
PRK02224		880	chromosome segregation protein; Provisional	80.52
PF03276		582	Gag_spuma: Spumavirus gag protein; InterPro: IPR00	80.19

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.3e-100  Score=900.15  Aligned_cols=688  Identities=38%  Similarity=0.572  Sum_probs=639.7

Q ss_pred             cccCCCCCCCCCChHHHHHHHhhhcCCcchhhHHHHHHHHHHHHHHcccCCCCCchhHHHHHHHHHHHHHHHHhcCCCCC
Q 002807           18 LAIYEKKTSSIDLYRPLRNYISLTYSEREAFNLEDDLETVKQLRSDVERVPDPTPSTRRDLLQNYFKALCLIETRFPISP   97 (878)
Q Consensus        18 l~iplK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~dl~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~~   97 (878)
                      +++|+|+|.++||.++|.+||..+||+ ..+...++|+++.+||+.+++.. .+.++ .+.+.+||.+|+.|+.|||...
T Consensus         6 ~~~~lK~t~e~d~~~~l~~~i~~~y~~-~~~~~~~~i~~~~~lR~~a~~~~-~~~~~-~~~l~~yy~qL~~l~~r~p~~~   82 (714)
T KOG2220|consen    6 LPIPLKKTSEVDFLKPLSKLIQLSYGE-SQENRNDAIEKLEKLRNNANGVP-KPSEG-LEVLKRYYGQLCYLESRFPMSE   82 (714)
T ss_pred             cCcccccCCccchhhhHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCC-cchhh-hHHHHHHHHHHHHHHHhcCccc
Confidence            899999999999999999999999999 43444599999999999888765 34466 8999999999999999999987


Q ss_pred             CCCCccccceeeecCCCCC-CcccccchhHHHHHHHHHHHHHHHHHHhhCCCCChHhHHHHHHHHHHHHHHHHHHHhhhh
Q 002807           98 DKDHINTVMFLWFDAFKQK-QKASQQNIHLEKAAVLFNLGAVYSQIGLSCDRTTVEGRRLASHSFIAAAGAFAYLRDNAA  176 (878)
Q Consensus        98 ~~~~i~~l~F~W~ds~~~~-~~~~~~sl~fEka~VLfNiaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~F~~l~~~~~  176 (878)
                      +  ++. . |+|+|+|+.+ .++++.+|.||++|||||||++|+++|+..+|.+++|+|.||++||.|||||.|++.+. 
T Consensus        83 ~--~~~-~-F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq~aagaf~~l~~~~-  157 (714)
T KOG2220|consen   83 N--EIE-E-FTWKDAFDSGAKKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQAAAGAFRYLSRDA-  157 (714)
T ss_pred             c--ccc-c-eeeeecccCCccceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhcHHh-
Confidence            6  344 4 9999999866 89999999999999999999999999999999999999999999999999999999442 


Q ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHH
Q 002807          177 TKASVGSSTTVDISVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALGALTVAPLKDHFDKAWVT  256 (878)
Q Consensus       177 ~~~~~~~~~~~Dls~~~L~~L~~lmLAQAQEc~~~Ka~~~~~k~~liAKLA~qv~~~Y~~a~~~l~~~~~~~~~~~~w~~  256 (878)
                          ....+++|++.+++.++..+|+||||||||.|++.|++++++||||+.+|..+|.+|++++.. ...+.+.++|+.
T Consensus       158 ----~~~~~~~d~~~~~l~~~~~l~~AqAQec~f~ks~~d~~~~~~iaKis~q~~~fy~~Al~~~~~-~~~~~~~~~w~~  232 (714)
T KOG2220|consen  158 ----LGVEPLVDLSSLTLVFLRFLMLAQAQECFFYKSLTDNPKPSIIAKLSAQVVLFYEEALKAQIG-ARADRITKEWLT  232 (714)
T ss_pred             ----cCcccccccCHHHHHHHHHhhHHhhchheeehhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH-hhhcccchhHHH
Confidence                136889999999999999999999999999999999999999999999999999999999987 456788999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002807          257 HVQLKAALFYAEACYRYSLELHEKEEIAEEIARLKSGISALTEAKKSPKGAAAQLLDAISKLEANLNRNLDRAVKENDRV  336 (878)
Q Consensus       257 ~~~~K~~~f~A~A~y~~a~~~~e~~~~GeaIa~L~~A~~~l~~a~~~~k~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~I  336 (878)
                      ++..|..+|.++++|+++..+++.+++|++|+||+.+...|.+|.+...+...    .+....++|...+++++||||||
T Consensus       233 ~~~~k~~~~~~v~~~~~~~~~~e~~~~ge~i~~l~~~~~~l~~Aqk~~~~~~~----~~~~~~~~~~~~lk~a~kdNdFI  308 (714)
T KOG2220|consen  233 LVAAKFARFAGVAYYYQSLFLHEKSKDGEAIARLQLSLLMLSEAQKCSFGEFT----DVIESLSSLEKALKEAKKDNDFI  308 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccch----hHhhhhhHHHHHHHhhhcccchh
Confidence            99999999999999999999999999999999999999999999888765322    23334488999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCccccccCCccchhhhHhhhhhccCChHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 002807          337 YLMRVPSPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQGSELTRVRLKE  416 (878)
Q Consensus       337 Y~e~VP~~~~Lp~i~~~~~vk~~~~~~~~~~~~~dlF~~LvP~~V~ea~s~Y~e~k~~lvr~~~~~~~~~~~~l~~~L~~  416 (878)
                      ||++||+..+||+|+++.||||+++..+.....++||+.|||+.||++++.|+|++++++|..+++++++|+.++.+|.+
T Consensus       309 yhe~vp~~~~l~~~~~~~~vkp~~~~~l~~~~~~~lF~~lvp~~v~~a~s~yse~ka~ll~~~~~~~~~~~q~l~~~l~s  388 (714)
T KOG2220|consen  309 YHERVPKVSELPPLKAAQLVKPLPWAVLLPSKAGDLFASLVPVEVAEALSAYSEEKADLLRESIARLREANQLLNSVLAS  388 (714)
T ss_pred             hhcccccccccCCcchhHhhcCCCcccccchhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999999999999999988887788999999999999999999999999999999999999999999999


Q ss_pred             cCC-chHHHhhhcCCCCChhHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCC
Q 002807          417 MDL-PDSILALEGNMTLPADLKEEVEAVQISGGPAALEAELQQLRDLRRVNQELLVQTEELLQKEATEDAQFRSQFGTRW  495 (878)
Q Consensus       417 l~L-P~~l~~l~~~~~lP~~l~~~~~~i~~~gg~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~eD~~~R~kyG~~W  495 (878)
                      ++| |..+..+++...+|+++.+++..++.  |+..+...++.|.++.+++++++++++++|++|+..|..+|.++|.+|
T Consensus       389 ~~l~p~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~l~~l~~~~~~~l~~~~~~l~~ea~~~~~lr~~~~~~~  466 (714)
T KOG2220|consen  389 LNLDPLALSDLSGNKSLPESFKEKSAAVRR--GLSNLQQELSELRELKKKVREILDEIEEALDEEAALDNKLRAKLGQRW  466 (714)
T ss_pred             hccChhhhhhhhcccccchhhhhhHHHHhh--hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc
Confidence            999 99999999988999999999999965  999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhcC--hhhhHhhCCCCCcCcCCCCcchHHHHHHHH
Q 002807          496 TRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALK  573 (878)
Q Consensus       496 ~r~~S~~l~~~l~~~l~k~~~~L~~A~~sD~~v~~k~~~~~~~l~~L~--~~~l~~~lP~~~~p~~~l~~~~~~~v~~Lr  573 (878)
                      +|.+|.+++..++.+++++++.|+.|...|..+++.++.|..++.+|+  ..+|...||+.+.+   ++.+.++.+.+++
T Consensus       467 ~~~~s~~~~~~~~~e~~k~~~~l~~a~~~d~~~~~~~~~~~~~~~ll~~~~~e~~~~lp~~~~~---~~~~~~~~~~~~k  543 (714)
T KOG2220|consen  467 TRTRSSELTLALYEELEKLREVLEPAKAADVQLKKAFEAHKKNIRLLSLPPPELQPSLPSLDGP---LNPNSDEIVRQLK  543 (714)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcchhhhcCCCchhhhhcCCCCCC---CCcchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999  56699999998743   4456678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHhhcCCCh-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002807          574 QSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSAGSY-EDLFRKEISKYDHICEEIAQNIEAQEQLLMQIQAQNEEF  652 (878)
Q Consensus       574 ~ll~~l~~l~~qR~~l~~~lk~~~~~ddI~~kLi~~~~~~-e~lf~~eL~kf~~l~~~I~~~~~~Q~~Ll~~I~~~n~~f  652 (878)
                      ..+++|++++.+|..+..+++..+..|||++.|+.+.+.+ +++|.+++.||++++..|.+|+.+|+.++.+|+..+..|
T Consensus       544 ~~l~~~~e~k~~r~~L~~~l~~~i~~ddi~~sl~~~~~~~e~dl~~~~l~k~~~l~~~i~~nv~~q~~~l~~~~~~~~~~  623 (714)
T KOG2220|consen  544 GYLDDLEELKAEREKLEGDLKVDIFKDDILNSLAIHGGIKEEDLFVSELGKFDPLKWLIHQNVVKQESLLGEIQAANQEF  623 (714)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHhcccchhhhhcccccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998754 789999999999999999999999999999999999999


Q ss_pred             HHhhhch-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002807          653 SAIFNLE-DYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQR  727 (878)
Q Consensus       653 ~~~~~~~-~~~~~re~~l~~L~~A~~~y~el~~nl~eG~~FY~~L~~~l~~l~~~v~df~~~R~~E~~~L~~~l~~  727 (878)
                      ...++.. ....+|+.+++.|..||+.|+|+..++.+|++||++|+.++.++.++|.+|+.+|+.|++.++..+..
T Consensus       624 ~~~~~~~~~~~~~re~~l~~L~~a~~~~~el~~~~~~g~~fY~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  699 (714)
T KOG2220|consen  624 SKERSFLSPSSKKREKLLSTLAAAYDSYRELSKKLSEGTEFYNDLTNRLVNLANRVSDAGFARSTEKNKLLRPLSL  699 (714)
T ss_pred             hhcccccchhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhchhhhcchhhhccccCcccc
Confidence            9888753 44555999999999999999999999999999999999999999999999999999999999776554

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins	Back alignment and domain information

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains	Back alignment and domain information

>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily	Back alignment and domain information

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome	Back alignment and domain information

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins	Back alignment and domain information

>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains	Back alignment and domain information

>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1	Back alignment and domain information

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily	Back alignment and domain information

>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins	Back alignment and domain information

>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules	Back alignment and domain information

>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2	Back alignment and domain information

>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains	Back alignment and domain information

>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains	Back alignment and domain information

>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains	Back alignment and domain information

>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins	Back alignment and domain information

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily	Back alignment and domain information

>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains	Back alignment and domain information

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A	Back alignment and domain information

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PHA03247 large tegument protein UL36; Provisional	Back alignment and domain information

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]	Back alignment and domain information

>PHA03247 large tegument protein UL36; Provisional	Back alignment and domain information

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]	Back alignment and domain information

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]	Back alignment and domain information

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]	Back alignment and domain information

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PRK10263 DNA translocase FtsK; Provisional	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK10263 DNA translocase FtsK; Provisional	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]	Back alignment and domain information

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]	Back alignment and domain information

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PHA03378 EBNA-3B; Provisional	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PHA03378 EBNA-3B; Provisional	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals	Back alignment and domain information

>PRK10869 recombination and repair protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules	Back alignment and domain information

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules	Back alignment and domain information

>PHA03377 EBNA-3C; Provisional	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		878
2xs1_A		704	Crystal Structure Of Alix In Complex With The Sivma		9e-48
2oev_A		705	Crystal Structure Of AlixAIP1 Length = 705		9e-48
2r02_A		697	Crystal Structure Of AlixAIP1 IN COMPLEX WITH THE H		1e-47
3rau_A		363	Crystal Structure Of The Hd-Ptp Bro1 Domain Length		7e-27
2oew_A		380	Structure Of AlixAIP1 BRO1 DOMAIN Length = 380		1e-20
2oex_A		351	Structure Of AlixAIP1 V DOMAIN Length = 351		3e-17
2ojq_A		348	Crystal Structure Of Alix V Domain Length = 348		5e-17
3uly_A		410	Crystal Structure Of Brox Bro1 Domain In Complex Wi		3e-04
3zxp_A		407	Structural And Functional Analyses Of The Bro1 Doma		3e-04
3um3_A		411	Crystal Structure Of The Brox Bro1 Domain In Comple		3e-04

>pdb|2XS1|A Chain A, Crystal Structure Of Alix In Complex With The Sivmac239 Pykevtedl Late Domain Length = 704