Citrus Sinensis ID: 002856

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870---
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEccEEEcccccccccccccccEEEEEEEccccccccccccccEEcccccEEEcccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccccEccccccEcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccEEEEEEEEccccccccHHHHHcccccEEEEEEcccccEc
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKvydtdnanqKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTkafskeglgqqpktdpkekakSETRDWLNNLVSELESQIDSFEAELEGltvkkgktrpprlthlETSITRHKAHIMKLELILRLldndelspeqvNDVKDLLEDYVERnqddfeefsdvdelyhllpldkvesledlvtigppglVKATVISTHQQVTSVqeqgedtasqdsnsdvaartppakssgvgstastpavgpatpisinvpaqtlsnasntspvlpgsssvrgvfdntgpisssppvnltsstkeedvgnfpgrrsspsltdvrvmgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
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
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
***********DRVLKKVQEGVDVFDSIWNKVYDTDN*************EIKKLQRYRDQIKTWIQS***********YEQALVDARKLIEREMERFKIC********************************************************************HLETSITRHKAHIMKLELILRLLDNDELS**QVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVIST******************************************************************************************************************************************************PLVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
******L*GEIDRVLKKVQEGVDVFDSIW***********************************************SASYEQALVDARKLIEREMERFKI******************************TRDWLNNLVSELESQIDS**************************ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ***************TYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKE******************RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVIST******************************************AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS****************FPGRRSSPSLTDVRVMGR*****************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
****RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLV******************************************************************************************************************************************************************************************************************************************************************EIAPDQREKFLQRLQQVQQQGHSNLLG**************P*******************L*V**PG*N***************************************************************************************************************************DLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQxxxxxxxxxxxxxxxxxxxxxIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query873 2.2.26 [Sep-21-2011]
O75175753 CCR4-NOT transcription co yes no 0.272 0.316 0.511 6e-62
O13870640 General negative regulato yes no 0.260 0.354 0.493 2e-53
Q8K0V4751 CCR4-NOT transcription co yes no 0.160 0.186 0.542 3e-43
Q12514560 General negative regulato yes no 0.325 0.507 0.364 3e-37
P06102836 General negative regulato no no 0.243 0.254 0.403 5e-37
Q52JK6603 Probable NOT transcriptio N/A no 0.183 0.265 0.287 2e-10
Q9NZN8540 CCR4-NOT transcription co no no 0.101 0.164 0.34 5e-10
Q8C5L3540 CCR4-NOT transcription co no no 0.101 0.164 0.34 6e-10
Q9FPW4614 Probable NOT transcriptio no no 0.079 0.112 0.376 2e-07
P06100191 General negative regulato no no 0.144 0.659 0.329 6e-07
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  239 bits (611), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 131/256 (51%), Positives = 170/256 (66%), Gaps = 18/256 (7%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
           M   RKLQGEIDR LKKV EGV+ F+ IW K+++  NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1   MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60

Query: 61  QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
           QIKTW+ S+EIKDK+        L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG   K
Sbjct: 61  QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113

Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSI 175
            DP +K K E   WL N +  L  Q+D FE+E+E L+V+       K +  R+  L+  I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173

Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
            +H+ H+  LE ILR+LDND +  + +  +KD +E YV+ +QD DFEE    + LY  L 
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLD 230

Query: 235 LDKVESLEDLVTIGPP 250
           L+ +   + LV   PP
Sbjct: 231 LEDIP--QALVATSPP 244
The CCR4-NOT complex functions as general transcription regulation complex.
Homo sapiens (taxid: 9606)
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2 Back     alignment and function description
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 Back     alignment and function description
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1 Back     alignment and function description
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2 Back     alignment and function description
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 Back     alignment and function description
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query873
297739742897 unnamed protein product [Vitis vinifera] 0.996 0.969 0.784 0.0
255568948889 conserved hypothetical protein [Ricinus 0.987 0.969 0.762 0.0
359481840888 PREDICTED: uncharacterized protein LOC10 0.989 0.972 0.777 0.0
224125888886 predicted protein [Populus trichocarpa] 0.985 0.970 0.766 0.0
356559538892 PREDICTED: uncharacterized protein LOC10 0.994 0.973 0.704 0.0
356560386884 PREDICTED: uncharacterized protein LOC10 0.979 0.967 0.721 0.0
224144772895 predicted protein [Populus trichocarpa] 0.988 0.964 0.729 0.0
449446768900 PREDICTED: uncharacterized protein LOC10 0.996 0.966 0.705 0.0
356571684882 PREDICTED: uncharacterized protein LOC10 0.977 0.967 0.712 0.0
357508635901 CCR4-NOT transcription complex subunit [ 0.981 0.951 0.691 0.0
>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1358 bits (3514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/900 (78%), Positives = 781/900 (86%), Gaps = 30/900 (3%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
           MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
Sbjct: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61  QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
           QIKTWIQSSEIKDKKVSASYEQAL+DARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
Sbjct: 61  QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120

Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA 180
           TDPKEKAKSETRDWLN +V ELESQIDSFEAE+EGL+VKKGKTRPPRLTHLETSI RHKA
Sbjct: 121 TDPKEKAKSETRDWLNTVVGELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSIARHKA 180

Query: 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES 240
           HIMKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DFEEFSDVD+LY+ LPLDKVES
Sbjct: 181 HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVES 240

Query: 241 LEDLVTIGPPGLVK-----------------ATVISTHQQVTSVQEQGEDTASQDSNSDV 283
           LEDLVTIG PGLVK                 ATV S  QQ TS+QEQ E+TASQDSNS++
Sbjct: 241 LEDLVTIGAPGLVKGAPALSLKNSLTPTQIPATVTSPLQQSTSIQEQSEETASQDSNSEI 300

Query: 284 AARTPPAKSSGVGSTA-STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT 342
             RTPPAK+S +GS+A STP    ATPI +NV A  LS AS    +LP S+SVRGV +N 
Sbjct: 301 GPRTPPAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-ASPAPTILPSSTSVRGVLENA 359

Query: 343 GPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSSAT 399
           G   SS PVN++SS KEE++ +FPGRRSSP+L +   VR +GRG  SSQPS+S+PLSS  
Sbjct: 360 GTAISS-PVNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSSGI 418

Query: 400 AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 459
            +PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVSPLSNRMIL Q AK NDGTG 
Sbjct: 419 TIPSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGTGL 478

Query: 460 IDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRL 517
            DS++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE GQFRGRTEI  DQ+EKFLQRL
Sbjct: 479 ADSSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQRL 538

Query: 518 QQVQQQGHSNLLGMP--LGGN-KQFSS-QQNPLLQQFNSQGSSISAQAGLGLGVQAPGMN 573
           QQVQQQ  S +LGMP   GGN KQFS+ QQNPLLQQFNSQ SS+S Q GLG+GVQAPG+N
Sbjct: 539 QQVQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGVGVQAPGLN 598

Query: 574 SVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPG 633
           +VTSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+ QQ QN+ ++ST ESA S  
Sbjct: 599 TVTSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPS-S 657

Query: 634 LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRR 693
           LGKNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLSPGQP+QS+QPSG LGVIGRR
Sbjct: 658 LGKNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIGRR 717

Query: 694 SVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTP 753
           S+SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLPQPKDSERAR+Y PRHPAVTP
Sbjct: 718 SISDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAVTP 777

Query: 754 PSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK 813
           PSYPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK
Sbjct: 778 PSYPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK 837

Query: 814 YNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 873
           YNTWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Sbjct: 838 YNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max] Back     alignment and taxonomy information
>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max] Back     alignment and taxonomy information
>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max] Back     alignment and taxonomy information
>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query873
TAIR|locus:2172389845 AT5G18230 [Arabidopsis thalian 0.646 0.667 0.641 7.8e-260
UNIPROTKB|O75175753 CNOT3 "CCR4-NOT transcription 0.479 0.556 0.389 5e-110
UNIPROTKB|F6XXD6753 CNOT3 "Uncharacterized protein 0.399 0.463 0.416 1e-109
MGI|MGI:2385261751 Cnot3 "CCR4-NOT transcription 0.414 0.482 0.415 3.1e-108
UNIPROTKB|E2R344710 CNOT3 "Uncharacterized protein 0.374 0.460 0.426 3.9e-108
UNIPROTKB|E1BCS1744 CNOT3 "Uncharacterized protein 0.392 0.461 0.413 8.2e-108
RGD|1304771751 Cnot3 "CCR4-NOT transcription 0.414 0.482 0.412 1.3e-107
FB|FBgn0033029844 l(2)NC136 "lethal (2) NC136" [ 0.376 0.389 0.424 2.7e-107
ZFIN|ZDB-GENE-040927-6901 cnot3a "CCR4-NOT transcription 0.747 0.724 0.297 1.4e-103
POMBASE|SPAC1B3.05640 not3 "CCR4-Not complex subunit 0.315 0.429 0.432 5.6e-92
TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1749 (620.7 bits), Expect = 7.8e-260, Sum P(2) = 7.8e-260
 Identities = 394/614 (64%), Positives = 448/614 (72%)

Query:     1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTDNANQKEKFEADLKKEIKKLQRY 58
             MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK  VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct:     1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60

Query:    59 RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 118
             RDQIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQ
Sbjct:    61 RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120

Query:   119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
             PKTDPKEKAKSETRDWLNN+VSELESQIDSFEAELEGL+VKKGKTRPPRLTHLETSITRH
Sbjct:   121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180

Query:   179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 238
             K HI+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY  LPLD+V
Sbjct:   181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240

Query:   239 ESLEDLVTIGP-----PGLVKATVISTHQQVTSV------QEQGEDTASQDSNSDVAART 287
             E LEDLVT GP     P  +K+++ ++  QV S+      QE+ EDT+  DS++++  +T
Sbjct:   241 EGLEDLVTAGPLVKGTPLSMKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSAEMVPKT 300

Query:   288 PPAKS-SGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPIS 346
             PP K+ +G+ S  STPA G   P S+NVPA    N SNTS  L  S   +   ++ G +S
Sbjct:   301 PPPKNGAGLHSAPSTPAGG--RP-SLNVPA---GNVSNTSVTLSTSIPTQTSIESMGSLS 354

Query:   347 SSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGN 406
                PV    + KEED    P R+   S+ D  + G G               + +P+NG+
Sbjct:   355 ---PV----AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGS 406

Query:   407 LGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAG 466
               +    ++VAKRNI+G E        VQ L SPLS +M+L   AKGNDGT S DSN  G
Sbjct:   407 RISATSAAEVAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PG 457

Query:   467 ETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXG 524
             +  A  GR F+PS+  G QWR G+ FQ+QNE    RGRTEIAPDQREKF          G
Sbjct:   458 DVAASIGRAFSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-G 514

Query:   525 HSNLLGMPL--GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASL 580
             H NLLG+P   GGN KQFSSQQ NPLLQQ     SSIS    LG+GVQAPG N ++SASL
Sbjct:   515 HGNLLGIPSLSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASL 570

Query:   581 QQQPNPIHQQSSQQ 594
             QQQ N + QQ  QQ
Sbjct:   571 QQQSNAMSQQLGQQ 584
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS
UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC1B3.05 not3 "CCR4-Not complex subunit Not3/5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XIII0282
hypothetical protein (886 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
pfam04065233 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not 2e-94
pfam04153131 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family 3e-56
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 1e-52
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 1e-31
COG5601172 COG5601, CDC36, General negative regulator of tran 2e-15
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.004
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component Back     alignment and domain information 
 Score =  296 bits (759), Expect = 2e-94
 Identities = 134/240 (55%), Positives = 170/240 (70%), Gaps = 14/240 (5%)

Query: 3   ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
           A+RKLQ EID++LKKV EG++ FDSI+ K+ +  NA+QKEK E+DLK+EIKKLQR RDQI
Sbjct: 2   AARKLQQEIDKLLKKVAEGLESFDSIYEKLENATNASQKEKLESDLKREIKKLQRLRDQI 61

Query: 63  KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTD 122
           KTW+ SS+IKDK        +L++ RKLIE  MERFK  EKE KTKAFSKEGL    K D
Sbjct: 62  KTWLSSSDIKDK-------DSLLENRKLIETAMERFKAVEKEMKTKAFSKEGLSAASKLD 114

Query: 123 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPP---RLTHLETSITR 177
           PKEK K+E  D+L+N + EL  QI+  EAE+E L+V  KK K       R+  LE  + R
Sbjct: 115 PKEKEKAEVCDFLSNTIDELNKQIELLEAEVESLSVQRKKRKADAAKQERIAELEELLER 174

Query: 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 237
           HK HI KLELILRLL+N EL PEQV+D+K+ +E YVE NQ+   +F + + +Y  L LD+
Sbjct: 175 HKFHISKLELILRLLENGELDPEQVDDIKEDIEYYVESNQE--PDFVEDETIYDDLNLDE 232

Length = 233
>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 873
KOG2150575 consensus CCR4-NOT transcriptional regulation comp 100.0
COG5665548 NOT5 CCR4-NOT transcriptional regulation complex, 100.0
PF04065233 Not3: Not1 N-terminal domain, CCR4-Not complex com 100.0
PF04153134 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR 100.0
COG5601172 CDC36 General negative regulator of transcription 99.98
KOG2151312 consensus Predicted transcriptional regulator [Tra 99.57
KOG2151 312 consensus Predicted transcriptional regulator [Tra 99.33
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 95.7
PHA02562562 46 endonuclease subunit; Provisional 95.35
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 94.01
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.99
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 93.36
PF00038312 Filament: Intermediate filament protein; InterPro: 93.31
KOG09961293 consensus Structural maintenance of chromosome pro 92.69
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 92.37
PRK04778569 septation ring formation regulator EzrA; Provision 91.9
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 91.89
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 91.84
cd07648261 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am 91.57
PRK04863 1486 mukB cell division protein MukB; Provisional 91.5
COG11961163 Smc Chromosome segregation ATPases [Cell division 91.09
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 90.91
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.71
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 90.68
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 90.16
KOG0963629 consensus Transcription factor/CCAAT displacement 90.08
KOG09961293 consensus Structural maintenance of chromosome pro 89.75
KOG2911439 consensus Uncharacterized conserved protein [Funct 89.49
PHA0042588 DNA packaging protein, small subunit 88.62
COG11961163 Smc Chromosome segregation ATPases [Cell division 88.38
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 88.19
cd07647239 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ 88.11
PRK02224880 chromosome segregation protein; Provisional 87.95
PHA02562562 46 endonuclease subunit; Provisional 87.88
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.81
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 87.6
PRK02224880 chromosome segregation protein; Provisional 87.46
PF07139302 DUF1387: Protein of unknown function (DUF1387); In 87.39
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 87.22
PRK03918880 chromosome segregation protein; Provisional 87.1
PTZ00464211 SNF-7-like protein; Provisional 86.83
PF1112382 DNA_Packaging_2: DNA packaging protein ; InterPro: 86.59
KOG10291118 consensus Endocytic adaptor protein intersectin [S 86.39
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 86.25
PRK11637428 AmiB activator; Provisional 85.74
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 85.36
KOG1899861 consensus LAR transmembrane tyrosine phosphatase-i 85.29
PRK09343121 prefoldin subunit beta; Provisional 85.13
PF04799171 Fzo_mitofusin: fzo-like conserved region; InterPro 85.12
PRK03918880 chromosome segregation protein; Provisional 84.9
KOG09331174 consensus Structural maintenance of chromosome pro 84.74
PRK01156895 chromosome segregation protein; Provisional 84.55
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 84.46
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 84.11
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 83.83
PF05833455 FbpA: Fibronectin-binding protein A N-terminus (Fb 83.46
COG4942420 Membrane-bound metallopeptidase [Cell division and 83.44
PF13166712 AAA_13: AAA domain 83.32
PF09745127 DUF2040: Coiled-coil domain-containing protein 55 82.67
TIGR006061311 rad50 rad50. This family is based on the phylogeno 82.64
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 82.63
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 82.58
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 82.51
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 82.47
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 82.35
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 82.15
PRK05771646 V-type ATP synthase subunit I; Validated 82.09
PTZ00464211 SNF-7-like protein; Provisional 82.04
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 82.03
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 81.87
cd07598211 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of 81.42
cd00176213 SPEC Spectrin repeats, found in several proteins i 81.3
cd07672240 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin 80.78
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 80.7
PF12729181 4HB_MCP_1: Four helix bundle sensory module for si 80.51
PRK03947140 prefoldin subunit alpha; Reviewed 80.31
PRK01156895 chromosome segregation protein; Provisional 80.21
PRK11637428 AmiB activator; Provisional 80.06
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-117  Score=982.81  Aligned_cols=222  Identities=61%  Similarity=0.876  Sum_probs=214.6

Q ss_pred             ccccchhhhHHHHhhhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002856            2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE   81 (873)
Q Consensus         2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~~~~~   81 (873)
                      |++||||+|||||||||+|||++||+||+||++++|.|||||||+|||||||||||||||||||++++|||||.      
T Consensus         1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~------   74 (575)
T KOG2150|consen    1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD------   74 (575)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH------
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 002856           82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG  161 (873)
Q Consensus        82 ~~L~e~Rk~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~Dp~ekek~E~~~wL~~~IdeL~~QiE~~EaE~E~Ls~KK~  161 (873)
                       .|++||||||.+|||||+|||||||||||||||+.++|+||+|++|.|+++||++||++|++|+|.||+|         
T Consensus        75 -~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~---------  144 (575)
T KOG2150|consen   75 -SLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE---------  144 (575)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence             9999999999999999999999999999999999999999999999999999999999999999999994         


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCCCccCCccccccCCCCCccccc
Q 002856          162 KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL  241 (873)
Q Consensus       162 K~~~~r~~~le~~ierhk~Hi~kLE~lLRlL~N~~l~pe~V~~ikddieyYve~nqddf~ef~dde~iYd~L~Ld~~~~~  241 (873)
                              +++.+|+||+|||.+||+|||+|+|++++|+.|++++|||.||||+|++  +||.++++||++|+|++.+..
T Consensus       145 --------~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~  214 (575)
T KOG2150|consen  145 --------ELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEAS  214 (575)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhh
Confidence                    7999999999999999999999999999999999999999999999999  356679999999999999988


Q ss_pred             ccccccCC
Q 002856          242 EDLVTIGP  249 (873)
Q Consensus       242 ~~~~~~~p  249 (873)
                      .++++.++
T Consensus       215 ~~~~~~~~  222 (575)
T KOG2150|consen  215 MDAVAPGS  222 (575)
T ss_pred             HhhhcCCc
Confidence            88877544

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [] Back     alignment and domain information
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes Back     alignment and domain information
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PHA00425 DNA packaging protein, small subunit Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PRK05771 V-type ATP synthase subunit I; Validated Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain Back     alignment and domain information
>PRK03947 prefoldin subunit alpha; Reviewed Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query873
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3i2w_A290 Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 4e-07
 Identities = 46/263 (17%), Positives = 85/263 (32%), Gaps = 69/263 (26%)

Query: 7   LQGEIDRVL--KKVQEGVDVFDSIWNKVYDTDNANQKEKFEA-DLKKEIKKLQRYRDQIK 63
           +Q E+ R+L  K  +  + V  ++ N           + + A +L              K
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQN----------AKAWNAFNL------------SCK 267

Query: 64  TWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDP 123
             + +   + K+V+   +         I  +     +   E K+    K  L  +P+  P
Sbjct: 268 ILLTT---RFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKS-LLLKY-LDCRPQDLP 319

Query: 124 KEKAK----------SETRD-------WLNNLVSELESQIDSFEAELEGLTVKKGKTRPP 166
           +E                RD       W +    +L + I+S    LE    +K      
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------ 373

Query: 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY--VERNQDDFEEFS 224
               L  S+    AHI    ++L L+  D +    V  V + L  Y  VE+   +     
Sbjct: 374 MFDRL--SVFPPSAHIP--TILLSLIWFD-VIKSDVMVVVNKLHKYSLVEKQPKESTIS- 427

Query: 225 DVDELYHLLPLDKVESLEDLVTI 247
                   + L+    LE+   +
Sbjct: 428 -----IPSIYLELKVKLENEYAL 445
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Length = 290 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query873
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.73
3m3w_A320 Pacsin3, protein kinase C and casein kinase II sub 90.17
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 90.15
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.02
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 86.85
2v0o_A276 FCHO2, FCH domain only protein 2; lipid-binding pr 84.98
2efl_A305 Formin-binding protein 1; EFC domain, structural g 81.94
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 81.54
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 81.42
3aco_A350 Pacsin2, protein kinase C and casein kinase substr 81.14
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 81.1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
Probab=92.73  E-value=1.6  Score=48.89  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCC
Q 002856          137 NLVSELESQIDSFEAELEGLTVKKGKT  163 (873)
Q Consensus       137 ~~IdeL~~QiE~~EaE~E~Ls~KK~K~  163 (873)
                      +.+.+|+++++.+.+|+..|..|-.+.
T Consensus       558 ~~~~~l~~e~~~~~~~~~~l~~~~~~~  584 (597)
T 3oja_B          558 AKQAELRQETSLKRQKVKQLEAKKNRN  584 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455666666666666666554444443
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} Back     alignment and structure
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query873
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 93.37
d2efka1279 CDC42-interacting protein 4, CIP4 {Human (Homo sap 89.13
d2efka1279 CDC42-interacting protein 4, CIP4 {Human (Homo sap 87.94
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 85.42
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.42  Score=45.36  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=20.3

Q ss_pred             CccccchhhhHHHHhhhHHHhHHHHHHHHHHh
Q 002856            1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKV   32 (873)
Q Consensus         1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i~~K~   32 (873)
                      |+=...|-.-+|.+++++..|+..++++-+=+
T Consensus         1 ms~~~~l~d~~~~l~~~~~~~~~~~~~~~~~~   32 (288)
T d2efla1           1 MSWGTELWDQFDNLEKHTQWGIDILEKYIKFV   32 (288)
T ss_dssp             CCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334456667777888888877777654433
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure