Citrus Sinensis ID: 002868
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 872 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SMX9 | 881 | Squamosa promoter-binding | yes | no | 0.827 | 0.819 | 0.495 | 0.0 | |
| Q9S7P5 | 927 | Squamosa promoter-binding | no | no | 0.854 | 0.803 | 0.482 | 0.0 | |
| Q75LH6 | 969 | Squamosa promoter-binding | yes | no | 0.870 | 0.783 | 0.419 | 1e-165 | |
| Q9LGU7 | 862 | Squamosa promoter-binding | no | no | 0.629 | 0.636 | 0.432 | 1e-124 | |
| Q6Z8M8 | 1140 | Squamosa promoter-binding | no | no | 0.634 | 0.485 | 0.338 | 2e-86 | |
| A2YX04 | 1140 | Squamosa promoter-binding | N/A | no | 0.634 | 0.485 | 0.338 | 2e-86 | |
| Q8RY95 | 1035 | Squamosa promoter-binding | no | no | 0.907 | 0.764 | 0.300 | 1e-81 | |
| Q700C2 | 988 | Squamosa promoter-binding | no | no | 0.620 | 0.547 | 0.310 | 1e-67 | |
| Q6I576 | 842 | Squamosa promoter-binding | no | no | 0.417 | 0.432 | 0.252 | 2e-26 | |
| Q8S9G8 | 801 | Squamosa promoter-binding | no | no | 0.286 | 0.312 | 0.274 | 2e-24 |
| >sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/843 (49%), Positives = 532/843 (63%), Gaps = 121/843 (14%)
Query: 34 VAEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDERSSSYLLISLLRILSNMHSNN 93
+ EFDEGKRSCRRRLAGHNKRRRKT+P+ NG +D+ SS+YLLI+LL+ILSNMH
Sbjct: 156 LQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGNP-SDDHSSNYLLITLLKILSNMH--- 211
Query: 94 SDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPDLVSTGP 153
+ T DQDL+SHL ++L G +NL LL L G S G++
Sbjct: 212 -NHTGDQDLMSHLLKSLVSHAGEQLGKNLVELL------LQGGGSQGSLN---------- 254
Query: 154 EPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSASQSI 213
IG N A G QA + +
Sbjct: 255 ---------------IG--------------------------NSALLGIEQA--PQEEL 271
Query: 214 EMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPVSLYS 273
+ F +R +A N E + KM++ DLN++Y DS + +E S P NP SL
Sbjct: 272 KQFSARQDGTATENRSEK---QVKMNDFDLNDIYIDSDD--TDVERSPPPTNPATSSLDY 326
Query: 274 PLWLHPGSNKSSPPQASANSDSTSSQSQSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRR 333
P W+H +SSPPQ S NSDS S QS SSSS +AQ RT RIVFKLFGK+PN+FP+VLR
Sbjct: 327 PSWIH----QSSPPQTSRNSDSASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEFPIVLRG 382
Query: 334 QILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRT 393
QILDWLSHSPTD+ESYIRPGCIVLTIYLR + WEEL DLG SL +LL+ SDD W T
Sbjct: 383 QILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELSDDLGFSLGKLLDLSDDPLWTT 442
Query: 394 GWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSR 453
GW+Y RVQ+ +AF+YNGQVV+DT L LKS I S+KP+A+ +E+ +F VKG NL +
Sbjct: 443 GWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAIAATEKAQFTVKGMNLRQ 502
Query: 454 STTRLLCAIEGSYLVQETCYD-LMGGADTVNENDEL-QCLSFPCSIPNVFGRGFIEVEDH 511
TRLLC++EG YL+QET +D D +N E+ +C++F C +P + GRGF+E+ED
Sbjct: 503 RGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVECVNFSCDMPILSGRGFMEIEDQ 562
Query: 512 GLSSSFVPFIVAE-QEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWL 570
GLSSSF PF+V E +VCSEI +LE+ +E T+ QA+DF+HE+GWL
Sbjct: 563 GLSSSFFPFLVVEDDDVCSEIRILETTLEFT-----------GTDSAKQAMDFIHEIGWL 611
Query: 571 LHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTS 630
LHRS L G PN FP RF+WL+EFSM+ +WCAV++KLL + FDG V G+ +S
Sbjct: 612 LHRSKL----GESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDGAV--GEFSS 665
Query: 631 SELAIL-EMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNV 689
S A L E+ LLH+AVR+N +PMVE+LL Y P + +F+P+
Sbjct: 666 SSNATLSELCLLHRAVRKNSKPMVEMLLRYIP----------------KQQRNSLFRPDA 709
Query: 690 IGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSY 749
GPAGLTPLH+AA +D +E+VLDALT+DP VGIEAWK+ +DSTG TP DYA LR H SY
Sbjct: 710 AGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSY 769
Query: 750 IHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQ 809
IHL+QRKINKKS+ V+++IP S D + K+ P G +S + ++ Q
Sbjct: 770 IHLIQRKINKKSTTEDHVVVNIPVSFSDREQKE-PKSGPMASAL----------EITQIP 818
Query: 810 CRLCEQKVAYRNMRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLKY 869
C+LC+ K+ Y R S+ YRP MLSMVAIAAVCVCVALLFKS PEVLY+F+PFRWELL Y
Sbjct: 819 CKLCDHKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELLDY 878
Query: 870 GSS 872
G+S
Sbjct: 879 GTS 881
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Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6I576|SPL9_ORYSJ Squamosa promoter-binding-like protein 9 OS=Oryza sativa subsp. japonica GN=SPL9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 872 | ||||||
| 225432161 | 1029 | PREDICTED: squamosa promoter-binding-lik | 0.954 | 0.808 | 0.659 | 0.0 | |
| 255556564 | 1026 | Squamosa promoter-binding protein, putat | 0.947 | 0.805 | 0.680 | 0.0 | |
| 422779156 | 1029 | squamosa promoter binding protein 5 [Vit | 0.954 | 0.808 | 0.655 | 0.0 | |
| 297736802 | 980 | unnamed protein product [Vitis vinifera] | 0.922 | 0.820 | 0.651 | 0.0 | |
| 356532884 | 1032 | PREDICTED: squamosa promoter-binding-lik | 0.955 | 0.807 | 0.622 | 0.0 | |
| 356558528 | 1032 | PREDICTED: squamosa promoter-binding-lik | 0.955 | 0.807 | 0.617 | 0.0 | |
| 356519885 | 1039 | PREDICTED: squamosa promoter-binding-lik | 0.947 | 0.794 | 0.611 | 0.0 | |
| 225437714 | 997 | PREDICTED: squamosa promoter-binding-lik | 0.909 | 0.795 | 0.614 | 0.0 | |
| 147820979 | 967 | hypothetical protein VITISV_025316 [Viti | 0.861 | 0.776 | 0.581 | 0.0 | |
| 359480217 | 963 | PREDICTED: squamosa promoter-binding-lik | 0.872 | 0.790 | 0.583 | 0.0 |
| >gi|225432161|ref|XP_002274934.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/841 (65%), Positives = 662/841 (78%), Gaps = 9/841 (1%)
Query: 34 VAEFDEGKRSCRRRLAGHNKRRRKTHPDNVVNGGSLNDERSSSYLLISLLRILSNMHSNN 93
+ EFDEGKRSCRRRLAGHN+RRRKTHPD VVNGGSLNDER YLL+S+LRILSNMH+N+
Sbjct: 196 LQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLNDERGIRYLLMSVLRILSNMHANS 255
Query: 94 SDQTKDQDLLSHLFRNLAGVVGTSNVRNLSGLLQGSQGLLNAGPSNGNVEKVPDLVSTGP 153
SDQTKDQDLLSH+ +NLA GT N R++ GLLQGSQ LLNAG S G EKVPD+VS G
Sbjct: 256 SDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQDLLNAGTSVGTAEKVPDMVSNGL 315
Query: 154 EPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTNDAHSGRVQALSASQSI 213
P++ SA + R +G C ++ +K++ T+DA G +Q LS +Q
Sbjct: 316 VPNKLLGSASRMADGSDLQASSRPIGPCLMATVPEMAEKRVFTDDAQVGMLQNLSGTQPT 375
Query: 214 EMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEHLELSHAPVNPGPVSLYS 273
FP+ A N T GR K++N DLNNVY+DSQ+ +E+ E S+ P NPG L
Sbjct: 376 NRFPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQDCIENPERSYGPANPGTRPLDR 435
Query: 274 PLWLHPGSNKSSPPQASANSDSTSSQSQSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRR 333
L + S KSSPPQ SANSDSTS++S S+SSGEAQSRTDRIVFKLFGKDP+DFPLV+R+
Sbjct: 436 ALLVQQDSYKSSPPQTSANSDSTSARSLSTSSGEAQSRTDRIVFKLFGKDPSDFPLVMRK 495
Query: 334 QILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCDLGSSLRRLLEGSDDLFWRT 393
Q+LDWLSH+PT+IES+IRPGCI+LTIYLRLGK TWEELCCDLGSSL RLL+ S+D FWRT
Sbjct: 496 QVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEELCCDLGSSLSRLLDMSEDSFWRT 555
Query: 394 GWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAVPVSERVKFVVKGFNLSR 453
GW+Y RVQ+ +AFIY+GQVVLDTPL KSH +CRISSIKPIAVPVSE+ +FVVKGFNL+
Sbjct: 556 GWVYTRVQNRLAFIYSGQVVLDTPLPFKSH-NCRISSIKPIAVPVSEQAQFVVKGFNLAG 614
Query: 454 STTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHGL 513
S TRLLCA+EG YLVQETCY+L G DT E+D+LQCLSFPCS+PN+ GRGFIEVEDHGL
Sbjct: 615 SATRLLCALEGRYLVQETCYELTEGTDTFIEHDDLQCLSFPCSVPNISGRGFIEVEDHGL 674
Query: 514 SSSFVPFIVAEQEVCSEICMLESAIEAAEISDDFQKIAEKTEVKNQALDFLHEMGWLLHR 573
+SSF PFIVAEQ+VCSEICMLE I+ E ++D + K + K QALDF+HEMGWLLHR
Sbjct: 675 NSSFFPFIVAEQDVCSEICMLEGVIDMVETAEDILRETGKMQAKYQALDFIHEMGWLLHR 734
Query: 574 SHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSEL 633
++LKFR+G + PN FPFKRFK L+EFS++HDWCAVVKKLLGI+F GTV+ G+H S E+
Sbjct: 735 NYLKFRLGDMDPNLDLFPFKRFKCLMEFSVDHDWCAVVKKLLGIVFSGTVNAGEHPSIEI 794
Query: 634 AILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPA 693
A+L+M LLH AVRRNCRPMVELLL + PD +LDK GS K+ + +GS ++FKP+ +GPA
Sbjct: 795 ALLDMCLLHSAVRRNCRPMVELLLRFIPDKILDKSGSNDKRWPN-SGSNYLFKPDFVGPA 853
Query: 694 GLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLV 753
GLTPLH+AA D +ENVLDALTDDP VGIEAWKSA+D G TPNDYA LR H+SYI LV
Sbjct: 854 GLTPLHIAASMDGSENVLDALTDDPELVGIEAWKSARDKVGSTPNDYACLRGHNSYIQLV 913
Query: 754 QRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLC 813
Q+KIN K + RV+LDIP + +D ++K KP G KS RV SLQ EK + +Q C+LC
Sbjct: 914 QKKINNKLNR--RVVLDIPDAPLDCNTKPKPSDGLKSVRVPSLQIEK---QAARQHCKLC 968
Query: 814 EQKVAYRN--MRSSLVYRPVMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWELLKYGS 871
EQK+AY + MR+SL YRP MLSMVAIAAVCVCVALLFKSSPEVLY+FRPFRWELLKYGS
Sbjct: 969 EQKLAYGDTRMRTSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLKYGS 1028
Query: 872 S 872
S
Sbjct: 1029 S 1029
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556564|ref|XP_002519316.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223541631|gb|EEF43180.1| Squamosa promoter-binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|422779156|gb|AFX82677.1| squamosa promoter binding protein 5 [Vitis pseudoreticulata] | Back alignment and taxonomy information |
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| >gi|297736802|emb|CBI26003.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356532884|ref|XP_003534999.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356558528|ref|XP_003547557.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356519885|ref|XP_003528599.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225437714|ref|XP_002273228.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|147820979|emb|CAN74605.1| hypothetical protein VITISV_025316 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359480217|ref|XP_003632418.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 872 | ||||||
| TAIR|locus:2041329 | 881 | SPL1 "squamosa promoter bindin | 0.501 | 0.496 | 0.471 | 6.2e-181 | |
| TAIR|locus:2101402 | 927 | SPL12 "squamosa promoter-bindi | 0.491 | 0.462 | 0.460 | 5.8e-122 | |
| TAIR|locus:2037355 | 1035 | SPL14 "squamosa promoter bindi | 0.399 | 0.336 | 0.332 | 4.5e-51 | |
| TAIR|locus:2011706 | 988 | AT1G76580 [Arabidopsis thalian | 0.385 | 0.340 | 0.302 | 5.3e-44 | |
| TAIR|locus:2057656 | 131 | SPL3 "squamosa promoter bindin | 0.050 | 0.335 | 0.5 | 5.6e-06 | |
| TAIR|locus:2009675 | 174 | SPL4 "squamosa promoter bindin | 0.037 | 0.189 | 0.666 | 8.4e-05 | |
| TAIR|locus:2026428 | 405 | AT1G69170 [Arabidopsis thalian | 0.027 | 0.059 | 0.833 | 0.00019 | |
| TAIR|locus:2087105 | 181 | SPL5 "squamosa promoter bindin | 0.035 | 0.171 | 0.709 | 0.00031 | |
| TAIR|locus:2159717 | 359 | SPL13A "SQUAMOSA PROMOTER-BIND | 0.035 | 0.086 | 0.645 | 0.00053 | |
| TAIR|locus:2832472 | 359 | SPL13B "SQUAMOSA PROMOTER-BIND | 0.035 | 0.086 | 0.645 | 0.00053 |
| TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 6.2e-181, Sum P(3) = 6.2e-181
Identities = 221/469 (47%), Positives = 288/469 (61%)
Query: 197 NDAHSGRVQALSASQSIEMFPSRSSFSAKANEPEATFGRSKMSNIDLNNVYDDSQERVEH 256
N A G QA + ++ F +R +A N E + KM++ DLN++Y DS +
Sbjct: 257 NSALLGIEQA--PQEELKQFSARQDGTATENRSEK---QVKMNDFDLNDIYIDSDDT--D 309
Query: 257 LELSHAPVNPGPVSLYSPLWLHPGSNKSSPPXXXXXXXXXXXXXXXXXXXXXXXRTDRIV 316
+E S P NP SL P W+H +SSPP RT RIV
Sbjct: 310 VERSPPPTNPATSSLDYPSWIH----QSSPPQTSRNSDSASDQSPSSSSEDAQMRTGRIV 365
Query: 317 FKLFGKDPNDFPLVLRRQILDWLSHSPTDIESYIRPGCIVLTIYLRLGKPTWEELCCXXX 376
FKLFGK+PN+FP+VLR QILDWLSHSPTD+ESYIRPGCIVLTIYLR + WEEL
Sbjct: 366 FKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELSDDLG 425
Query: 377 XXXXXXXXXXXXXFWRTGWLYARVQHSVAFIYNGQVVLDTPLLLKSHKSCRISSIKPIAV 436
W TGW+Y RVQ+ +AF+YNGQVV+DT L LKS I S+KP+A+
Sbjct: 426 FSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAI 485
Query: 437 PVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADT-VNENDEL-QCLSFP 494
+E+ +F VKG NL + TRLLC++EG YL+QET +D D +N E+ +C++F
Sbjct: 486 AATEKAQFTVKGMNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVECVNFS 545
Query: 495 CSIPNVFGRGFIEVEDHGLSSSFVPFIVAEQE-VCSEICMLESAIEAAEISDDFQKIAEK 553
C +P + GRGF+E+ED GLSSSF PF+V E + VCSEI +LE+ +E
Sbjct: 546 CDMPILSGRGFMEIEDQGLSSSFFPFLVVEDDDVCSEIRILETTLEFTG----------- 594
Query: 554 TEVKNQALDFLHEMGWLLHRSHLKFRVGHLHPNFYFFPFKRFKWLLEFSMEHDWCAVVKK 613
T+ QA+DF+HE+GWLLHRS L G PN FP RF+WL+EFSM+ +WCAV++K
Sbjct: 595 TDSAKQAMDFIHEIGWLLHRSKL----GESDPNPGVFPLIRFQWLIEFSMDREWCAVIRK 650
Query: 614 LLGILFDGTVDTGDHTSSELAIL-EMGLLHKAVRRNCRPMVELLLNYAP 661
LL + FDG V G+ +SS A L E+ LLH+AVR+N +PMVE+LL Y P
Sbjct: 651 LLNMFFDGAV--GEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIP 697
|
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| TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SMX9 | SPL1_ARATH | No assigned EC number | 0.4958 | 0.8279 | 0.8195 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019711001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (977 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 872 | |||
| pfam03110 | 79 | pfam03110, SBP, SBP domain | 6e-13 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 3e-07 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 8e-05 |
| >gnl|CDD|190527 pfam03110, SBP, SBP domain | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-13
Identities = 23/26 (88%), Positives = 24/26 (92%)
Query: 36 EFDEGKRSCRRRLAGHNKRRRKTHPD 61
EFDEGKRSCRRRLAGHN+RRRK PD
Sbjct: 54 EFDEGKRSCRRRLAGHNERRRKPQPD 79
|
SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 872 | |||
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 99.81 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.78 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.77 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 99.75 | |
| PF03110 | 79 | SBP: SBP domain; InterPro: IPR004333 The SBP plant | 99.74 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 99.74 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.74 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.73 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.73 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.71 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.71 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.71 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.71 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.7 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.7 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.69 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.69 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.69 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 99.69 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.68 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.68 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.68 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.66 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.66 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.66 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.65 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 99.65 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.64 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.64 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.63 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.61 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 99.61 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.61 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 99.61 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.61 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 99.59 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.58 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.58 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.55 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.55 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.55 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.54 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 99.54 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.54 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.54 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.53 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.53 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.52 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.52 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.49 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.49 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.48 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.46 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.45 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.44 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.44 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.43 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.41 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.41 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.41 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.41 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.4 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.38 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.38 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.38 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.35 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.35 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.35 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.3 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.25 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.21 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.17 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.17 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.16 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.13 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.09 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.05 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.04 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.04 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.02 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 98.98 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 98.95 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 98.95 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 98.91 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 98.91 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 98.87 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 98.53 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 98.52 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.44 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 98.39 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.3 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.22 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.17 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.16 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.08 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.06 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 98.05 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.01 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 97.98 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 97.93 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 97.91 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 97.83 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 97.78 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 97.76 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 97.69 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 97.52 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 97.4 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 97.28 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 97.22 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 97.05 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 96.83 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 96.14 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 95.84 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 95.78 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 95.73 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 95.45 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 94.57 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 94.44 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 93.77 |
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-20 Score=187.89 Aligned_cols=123 Identities=24% Similarity=0.203 Sum_probs=83.3
Q ss_pred cchHHHHHHHCCCHHHHHHHHHhhhcCCcCCCCCCchhhhccCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCchhhH
Q 002868 595 FKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNY-APDNVLDKPGSRQK 673 (872)
Q Consensus 595 ~~~LLhfAve~g~~aVvk~LLd~l~~anv~~~~as~~~~d~~G~TpLH~AV~~g~~eIVElLL~~-Gad~~adg~~~~~k 673 (872)
-|++|||||.-|+.+++++||.. .++. ++++|..||||||+|+..|+-|+||-||.. |++.
T Consensus 38 ~Rt~LHwa~S~g~~eiv~fLlsq---~nv~-----~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv---------- 99 (226)
T KOG4412|consen 38 GRTPLHWACSFGHVEIVYFLLSQ---PNVK-----PDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV---------- 99 (226)
T ss_pred CCceeeeeeecCchhHHHHHHhc---CCCC-----CCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc----------
Confidence 46899999999999999999973 3444 445677899999999999999999999988 7654
Q ss_pred HHHhhhccCccccCCcCCCCCchHHHHHHhcCChHHHHHHhhcCCCCCCccccccccCCCCCCHHHHHHHcCCHHHHHHH
Q 002868 674 QLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLV 753 (872)
Q Consensus 674 ~lv~~~s~~y~~dvNa~d~~G~TPLHlAA~~~~~e~VVelLL~~p~~Ig~gA~vNakD~~G~TPLHyAa~~Gn~~iveLL 753 (872)
|++.++|.|||||||.++..| |+++|++++ |.++.+|..|+||||-|+.-|+.++|++|
T Consensus 100 --------------na~tn~G~T~LHyAagK~r~e-IaqlLle~g------a~i~~kD~~~qtplHRAAavGklkvie~L 158 (226)
T KOG4412|consen 100 --------------NATTNGGQTCLHYAAGKGRLE-IAQLLLEKG------ALIRIKDKQGQTPLHRAAAVGKLKVIEYL 158 (226)
T ss_pred --------------ceecCCCcceehhhhcCChhh-HHHHHHhcC------CCCcccccccCchhHHHHhccchhhHHHH
Confidence 445555555555555554444 555554432 44455555555555555555555555555
Q ss_pred HHh
Q 002868 754 QRK 756 (872)
Q Consensus 754 ~~k 756 (872)
+..
T Consensus 159 i~~ 161 (226)
T KOG4412|consen 159 ISQ 161 (226)
T ss_pred Hhc
Confidence 443
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain [] | Back alignment and domain information |
|---|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 872 | ||||
| 1ul4_A | 94 | Solution Structure Of The Dna-Binding Domain Of Squ | 1e-04 |
| >pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 9e-12
Identities = 81/483 (16%), Positives = 143/483 (29%), Gaps = 112/483 (23%)
Query: 40 GKRSCRRRLAGH---NKRRRKTHPDNV--VNGGSLNDERSSSYLLISLLRILSNMHSNNS 94
GK + +A + + + + +N + N + +L LL + ++ S
Sbjct: 162 GK-TW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 95 DQTKD--------QDLLSHLFRN---------LAGVVGTSNVRNLSGLLQGSQGLLNAGP 137
D + + Q L L ++ L V N + + + LL
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFNLSCKILLTTRF 274
Query: 138 SNGNVEKVPDLVSTGPEPSRPSTSACMTDNRIGFSEPMRSVGQCGTVPASDLLQKKISTN 197
V D +S + S + + + + LL K +
Sbjct: 275 KQ-----VTDFLS-AATTTHIS----LDHHSMTLTPD----------EVKSLLLKYLDC- 313
Query: 198 DAHSGRVQALSASQSIEMFPSR-SSFSAKANEPEATFGRSKMSNID-LNNVYDDSQERVE 255
R Q L + + P R S + + AT+ K N D L + + S +E
Sbjct: 314 -----RPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 256 HLELSHA-------PVN-PGPVSLYSPLWLHPGSNKSSPPQASANSDSTSSQSQSSSSGE 307
E P + P L S +W S N S
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV---IKSDVMVVVNKLHKYS--------- 415
Query: 308 AQSRTDRIVFKLFGKDPNDFPLVLRRQILDWLSHSPTD-------IESYIRPGCIVLTIY 360
L K P + + + L+ + ++ Y P
Sbjct: 416 -----------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-- 462
Query: 361 LRLGKPTWEE-LCCDLGSSLRRL-LEGSDDLFWRT----GWLYARVQHSVAFIYNGQVVL 414
L P ++ +G L+ + LF +L +++H +L
Sbjct: 463 -DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 415 DTPLLLKSHKSCRISSIKPI-AVPVSERVKFVVK-GFNLSRST-TRLL-CAI--EGSYLV 468
+T LK +K I P V+ + F+ K NL S T LL A+ E +
Sbjct: 522 NTLQQLKFYKP-YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 469 QET 471
+E
Sbjct: 581 EEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94 | Back alignment and structure |
|---|
| >1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88 | Back alignment and structure |
|---|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 872 | |||
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 99.89 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.86 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.86 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.85 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.85 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.84 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.84 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.84 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.84 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.83 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.83 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.83 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.83 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.83 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 99.83 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.83 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.83 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.83 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.83 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.83 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.82 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.82 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.82 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.82 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.82 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.82 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.82 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.82 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.82 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.82 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.82 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.82 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.82 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.82 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.82 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.82 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 99.81 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.81 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 99.81 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 99.81 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.81 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.81 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.81 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.81 | |
| 1ul4_A | 94 | SPL4, squamosa promoter binding protein-like 4; tr | 99.81 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.81 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.81 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.8 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 99.8 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.8 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 99.8 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.8 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 99.8 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.8 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 99.8 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 99.8 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.8 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.8 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.8 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.79 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 99.79 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.79 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 99.79 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.79 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 99.79 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 99.79 | |
| 1ul5_A | 88 | SPL7, squamosa promoter binding protein-like 7; tr | 99.78 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.78 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.78 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.78 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 99.78 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.78 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 99.78 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 99.78 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 99.77 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 99.77 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.77 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.77 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 99.77 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.77 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.77 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.77 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 99.76 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.76 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 99.75 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 99.75 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.75 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 99.74 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.74 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 99.74 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.73 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.72 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 99.72 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.71 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.71 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.71 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.7 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.69 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.68 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.66 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.65 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.65 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.65 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.63 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.63 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.63 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.63 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.62 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.61 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.59 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.54 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.47 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.46 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.43 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.41 | |
| 1wj0_A | 60 | Squamosa promoter-binding protein-like 12; DNA-bin | 98.96 |
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=201.14 Aligned_cols=150 Identities=23% Similarity=0.154 Sum_probs=121.0
Q ss_pred cchHHHHHHHCCCHHHHHHHHHhhhcCCcCCCCCCchhhhccCCcHHHHHHHcCCHHHHHHHHhcCCCCCC---CCCch-
Q 002868 595 FKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVL---DKPGS- 670 (872)
Q Consensus 595 ~~~LLhfAve~g~~aVvk~LLd~l~~anv~~~~as~~~~d~~G~TpLH~AV~~g~~eIVElLL~~Gad~~a---dg~~~- 670 (872)
+.+.|+.|+.+|+.++|+.||+.++ +++..|..|+||||+|+..++.+++++||++|++++. +|.+|
T Consensus 4 lg~~L~~Aa~~G~~~~v~~Ll~~Ga---------dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpL 74 (169)
T 4gpm_A 4 LGKRLIEAAENGNKDRVKDLIENGA---------DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTC---------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCC---------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHH
Confidence 3467899999999999999998763 3445577899999999999999999999999998874 35555
Q ss_pred ------hhHHHHhhhccCccccCCcCCCCCchHHHHHHhcCChHHHHHHhhcCCCCCCccccccccCCCCCCHHHHHHHc
Q 002868 671 ------RQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLR 744 (872)
Q Consensus 671 ------~~k~lv~~~s~~y~~dvNa~d~~G~TPLHlAA~~~~~e~VVelLL~~p~~Ig~gA~vNakD~~G~TPLHyAa~~ 744 (872)
....+++..- .+++++|.+|..|+||||+||..++.+ +|++|++.+ |++|.+|.+|+||||+|+.+
T Consensus 75 h~A~~~g~~~~v~~Ll-~~gadvn~~d~~G~TpLh~A~~~g~~~-~v~~Ll~~g------ad~~~~d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 75 HHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKE-VVKLLISKG------ADVNTSDSDGRTPLDLAREH 146 (169)
T ss_dssp HHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHH-HHHHHHHTT------CCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCHH-HHHHHHHcC------CCccccCCCCCCHHHHHHHc
Confidence 2334444211 136789999999999999999998876 999998864 78899999999999999999
Q ss_pred CCHHHHHHHHHhhhhcC
Q 002868 745 AHHSYIHLVQRKINKKS 761 (872)
Q Consensus 745 Gn~~iveLL~~k~~~~~ 761 (872)
|+.+++++|++++++..
T Consensus 147 g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 147 GNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TCHHHHHHHHTC-----
T ss_pred CCHHHHHHHHHCCCCcC
Confidence 99999999999988754
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
| >1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
| >1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
| >1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 872 | ||||
| d1ul4a_ | 81 | g.72.1.1 (A:) Squamosa promoter binding protein-li | 7e-11 | |
| d1ul5a_ | 86 | g.72.1.1 (A:) Squamosa promoter binding protein-li | 2e-10 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 6e-05 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 3e-04 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 7e-04 |
| >d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81 | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa promoter binding protein-like 4, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 56.7 bits (137), Expect = 7e-11
Identities = 22/35 (62%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 27 CSDSASSVAEFDEGKRSCRRRLAGHNKRRRKTHPD 61
CS + EFDE KRSCRRRLAGHN+RRRK+ +
Sbjct: 48 CS-RFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE 81
|
| >d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86 | Back information, alignment and structure |
|---|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 872 | |||
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.84 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.84 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.83 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.82 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.82 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.82 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.81 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.81 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.8 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.79 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1ul4a_ | 81 | Squamosa promoter binding protein-like 4, DNA-bind | 99.79 | |
| d1ul5a_ | 86 | Squamosa promoter binding protein-like 7, DNA-bind | 99.79 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.78 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.75 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.75 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.74 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.71 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.71 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.71 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.68 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.67 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.66 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.65 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 99.64 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.62 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.59 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.59 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.57 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.53 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.5 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.49 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.47 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.44 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.27 | |
| d1wj0a_ | 58 | Squamosa-promoter binding-like protein 12, DNA-bin | 98.92 | |
| d1qhoa1 | 81 | Five domain "maltogenic" alpha-amylase (glucan 1,4 | 81.4 |
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.84 E-value=8.2e-22 Score=196.29 Aligned_cols=152 Identities=19% Similarity=0.166 Sum_probs=115.0
Q ss_pred chHHHHHHHCCCHHHHHHHHHhhhcCCcCCCCCCchhhhccCCcHHHHHHHcCCHHHHHHHHhcCCCCCC---CCCch--
Q 002868 596 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVL---DKPGS-- 670 (872)
Q Consensus 596 ~~LLhfAve~g~~aVvk~LLd~l~~anv~~~~as~~~~d~~G~TpLH~AV~~g~~eIVElLL~~Gad~~a---dg~~~-- 670 (872)
+++||+|+..|+.++++.||......-+. .|++++.+|..|+||||+|++.|+.++|++||++|++.+. +|.++
T Consensus 34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~-~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~ 112 (277)
T d2fo1e1 34 RTVLHWIASNSSAEKSEDLIVHEAKECIA-AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH 112 (277)
T ss_dssp CCHHHHHHCTTCCSCCTTHHHHHHHHHHH-TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcchhHHHH-cCCCccccCCCCCeeecccccccccccccccccccccccccccccccccc
Confidence 58999999999999999998653221111 2456667788999999999999999999999999998753 12111
Q ss_pred --------------------------------------------hhHH--------------------------------
Q 002868 671 --------------------------------------------RQKQ-------------------------------- 674 (872)
Q Consensus 671 --------------------------------------------~~k~-------------------------------- 674 (872)
....
T Consensus 113 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 192 (277)
T d2fo1e1 113 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 192 (277)
T ss_dssp HHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH
T ss_pred chhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccc
Confidence 0000
Q ss_pred ---------HHhhhccCccccCCcCCCCCchHHHHHHhcCChHHHHHHhhcCCCCCCccccccccCCCCCCHHHHHHHcC
Q 002868 675 ---------LVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRA 745 (872)
Q Consensus 675 ---------lv~~~s~~y~~dvNa~d~~G~TPLHlAA~~~~~e~VVelLL~~p~~Ig~gA~vNakD~~G~TPLHyAa~~G 745 (872)
++.......+.+++.+|..|+||||+|+..++.+ +|++|++. ||++|++|.+|.||||||+++|
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~-iv~~Ll~~------gadin~~d~~G~T~L~~A~~~~ 265 (277)
T d2fo1e1 193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE-VVMYLIQQ------GASVEAVDATDHTARQLAQANN 265 (277)
T ss_dssp HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH-HHHHHHHT------TCCSSCCCSSSCCHHHHHHHTT
T ss_pred cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH-HHHHHHHC------cCCCCCcCCCCCCHHHHHHHcC
Confidence 0000000113456788999999999999998876 99999875 4788999999999999999999
Q ss_pred CHHHHHHHHH
Q 002868 746 HHSYIHLVQR 755 (872)
Q Consensus 746 n~~iveLL~~ 755 (872)
|.+++++|++
T Consensus 266 ~~~iv~lL~~ 275 (277)
T d2fo1e1 266 HHNIVDIFDR 275 (277)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999999985
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
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| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
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| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
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| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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