Citrus Sinensis ID: 002870

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870--

MAPDPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKSDILL

ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEEccccccccEEEEEcccccccccccccccccccEEEEcccccccHHHHHHHHccccccc

cccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHcccccccHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccEEEEcccccHHHHHHHHHHHHHccHHccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHccccEEEEEccccccccEEEEEcEEEEEEcccccccEEEEEEcccccEEEEccccEEcccccHHccc

mapdpnsasgsgtkdeasvkvpakdpkkkddkkdedLSEEDLALKQQLELYVErvqdpdpglQKVALESMRTeirtstssmtsvpkplkflrphygtlkayyetmpdsdlKKYMADILSVLALTMSAEGERESLKYRLLgsegdigswGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHvdatnfkrTCLYLTSaakylpgpddmLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGitleldddmvpddddryALQDIVNNVKLSEGYLTLARdievmepkspediyKAHLldgrasagasVDSARQNLAATFVNAFVnagfgqdklmtvpsdassggssgnwlfknkehgKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIvncgirndcDPALALLSEYVGREDACIRIGAIMGLgisyagtqndQIRHKLSTIlndaksplDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDrseselgepltrlIPLGLgllylgkqesvEATAEVSKTFNEKIRKYCDMTLLscayagtgnVLKVQNLLGHCaqhhekgeayqgpaVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLlcisnpkvnvmdtlsrlshdtdSEVAMAAVISLGligsgtnnARIAGMLRNLSsyyykdanLLFCVRIAQGLVHmgkglltlnpyhsdrfllsptALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMqprmlltvdenlkplsvpvrvgqavdvvgqagrpktitgfqthstpvllaagdraelateksdill

mapdpnsasgsgtkdeasvkvpakdpkkkddkkdedlseEDLALKQQLELyvervqdpdpglQKVALESMrteirtstssmtsvpkplkFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHgitleldddmvPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAgrpktitgfqthstpvllaagdraelateksdill

MAPDPNSASGSGTKDEasvkvpakdpkkkddkkdedlseedlalkQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPeavdllmevedldllvehvdATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELdddmvpddddRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPltrliplglgllylgKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSvpvrvgqavdvvgqagrPKTITGFQTHSTPVLLAAGDRAELATEKSDILL

***************************************************************************************LKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVM*******IYKAHLLD************RQNLAATFVNAFVNAGFGQDKL***************WLFK******MSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLA****************

*******************************************LKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTD*ASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLEL************************EGYLTLARDIEVMEPKSPEDIYKAHLLD***********ARQNLAATFVNAFVNAGFGQDKLMTVPSD*SSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELAT**SDILL

***************************************EDLALKQQLELYVERVQDPDPGLQKVALESMRT***********VPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVP********SGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAE**********

************************************LSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEK*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		872	2.2.26 [Sep-21-2011]
Q9SIV2		891	26S proteasome non-ATPase	yes	no	0.993	0.971	0.859	0.0
Q6XJG8		891	26S proteasome non-ATPase	no	no	0.990	0.969	0.830	0.0
Q8VDM4		908	26S proteasome non-ATPase	yes	no	0.969	0.930	0.525	0.0
Q4FZT9		908	26S proteasome non-ATPase	yes	no	0.969	0.930	0.525	0.0
Q13200		908	26S proteasome non-ATPase	yes	no	0.972	0.933	0.521	0.0
P56701		908	26S proteasome non-ATPase	yes	no	0.974	0.936	0.520	0.0
Q5R9I6		908	26S proteasome non-ATPase	yes	no	0.972	0.933	0.520	0.0
P87048		891	26S proteasome regulatory	yes	no	0.972	0.951	0.478	0.0
Q7S8R8		902	26S proteasome regulatory	N/A	no	0.956	0.924	0.480	0.0
Q54BC6		893	26S proteasome non-ATPase	yes	no	0.948	0.926	0.483	0.0

>sp\|Q9SIV2\|RPN1A_ARATH 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2	Back alignment and function desciption

 Score = 1486 bits (3848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/869 (85%), Positives = 821/869 (94%), Gaps = 3/869 (0%)

Query: 1   MAP--DPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDP 58
           MAP  DPNS  G   KDEA++KVP+KDPKKKD+KKDEDLSEEDL LKQ LELYVERVQDP
Sbjct: 1   MAPTQDPNSVGGGAKKDEATLKVPSKDPKKKDEKKDEDLSEEDLELKQNLELYVERVQDP 60

Query: 59  DPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADIL 118
           +P LQK ALESMR EIR STSSMTSVPKPLKFLRPHYGTLKA++ETM DSDLKKY++DIL
Sbjct: 61  NPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPHYGTLKAFHETMADSDLKKYLSDIL 120

Query: 119 SVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLM 178
           SVLALTMSA+GERESL++RL+G+EGDIGSWGHEYVRNLAGEIAQEY KRQ++EASIDDLM
Sbjct: 121 SVLALTMSADGERESLRFRLIGTEGDIGSWGHEYVRNLAGEIAQEYTKRQSEEASIDDLM 180

Query: 179 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD 238
           ELVQ+IVAFHMKHNAE EAVDLLM+VEDLDLL+EHVD TNFKRTC YLTSAA+YLPGPDD
Sbjct: 181 ELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVDKTNFKRTCNYLTSAARYLPGPDD 240

Query: 239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITL 298
           MLVLDI+YMIY+KFEE+PNALQIALFLDN QYVKQ+FTSC DLL+KKQFCY++ARHGIT 
Sbjct: 241 MLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGITF 300

Query: 299 ELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG 358
           ELDD+MV DDDDR ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+G
Sbjct: 301 ELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASSG 360

Query: 359 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
           ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD+++G SSGNWLFKNKEHGK SAAASL
Sbjct: 361 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSTTG-SSGNWLFKNKEHGKTSAAASL 419

Query: 419 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED 478
           GMI LWDVDSGL+Q+DKYFHS DN +IAGALLGVGIVNCGI+NDCDPALALL +Y+ +ED
Sbjct: 420 GMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKED 479

Query: 479 ACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV 538
           + +RIGAIMGLGISYAG+QNDQIR+KLS ILNDAK+PLDVIAF+++SLG+IYVGSCNEEV
Sbjct: 480 SSVRIGAIMGLGISYAGSQNDQIRNKLSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEV 539

Query: 539 AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 598
           AQ+IIFALMDRSE+ELG+ LTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT
Sbjct: 540 AQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 599

Query: 599 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658
           LLSCAYAGTGNVLKVQ+LL  C +H EKG+ +QGPAVLG+AMVAM+EELG++M IRSLE 
Sbjct: 600 LLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIHQGPAVLGLAMVAMSEELGVDMEIRSLER 659

Query: 659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718
           +LQYGEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAM+A+ISLGLIG+GTN
Sbjct: 660 MLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLIGAGTN 719

Query: 719 NARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIV 778
           NARIAGMLRNLSSYYYKD +LLFCVRIAQGLVHMGKGLLTL+P+HS+RFLLSPTALAGIV
Sbjct: 720 NARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMGKGLLTLSPFHSERFLLSPTALAGIV 779

Query: 779 TTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAG 838
           T L ACLDMK +I+GKYHYVLYFLVLAMQPRM+LTVDENLKPLSVPVRVGQAVDVVGQAG
Sbjct: 780 TLLHACLDMKPIILGKYHYVLYFLVLAMQPRMMLTVDENLKPLSVPVRVGQAVDVVGQAG 839

Query: 839 RPKTITGFQTHSTPVLLAAGDRAELATEK 867
           RPKTITGFQTHSTPVLLAAG+RAELAT+K
Sbjct: 840 RPKTITGFQTHSTPVLLAAGERAELATDK 868

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Required during embryogenesis (PubMed:16169895). Required for optimal plant growth and stress responses (PubMed:19605416).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6XJG8\|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis thaliana GN=RPN1B PE=2 SV=1	Back alignment and function description

>sp\|Q8VDM4\|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1	Back alignment and function description

>sp\|Q4FZT9\|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1	Back alignment and function description

>sp\|Q13200\|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3	Back alignment and function description

>sp\|P56701\|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2	Back alignment and function description

>sp\|Q5R9I6\|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1	Back alignment and function description

>sp\|P87048\|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn1 PE=1 SV=2	Back alignment and function description

>sp\|Q7S8R8\|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpn-1 PE=3 SV=2	Back alignment and function description

>sp\|Q54BC6\|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		872
255553635		895	26S proteasome regulatory subunit rpn1,	0.994	0.968	0.905	0.0
225446449		890	PREDICTED: 26S proteasome non-ATPase reg	0.993	0.973	0.900	0.0
449453553		896	PREDICTED: 26S proteasome non-ATPase reg	0.994	0.967	0.880	0.0
356542984		885	PREDICTED: 26S proteasome non-ATPase reg	0.988	0.974	0.869	0.0
356517488		885	PREDICTED: 26S proteasome non-ATPase reg	0.988	0.974	0.870	0.0
357474441		886	26S proteasome non-ATPase regulatory sub	0.989	0.974	0.870	0.0
18399399		891	26S proteasome regulatory subunit N1 [Ar	0.993	0.971	0.859	0.0
224132892		890	predicted protein [Populus trichocarpa]	0.990	0.970	0.861	0.0
297832660		891	AtRPN1a/RPN1A [Arabidopsis lyrata subsp.	0.990	0.969	0.863	0.0
224095561		890	predicted protein [Populus trichocarpa]	0.990	0.970	0.844	0.0

>gi\|255553635\|ref\|XP_002517858.1\| 26S proteasome regulatory subunit rpn1, putative [Ricinus communis] gi\|223542840\|gb\|EEF44376.1\| 26S proteasome regulatory subunit rpn1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1542 bits (3993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/871 (90%), Positives = 836/871 (95%), Gaps = 4/871 (0%)

Query: 1   MAPDPNSASGSGT----KDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQ 56
           MAPDPN+ASGSG+    +DEASVKVP+KDPKKKD+KKDEDLS+EDLALKQQLELYVER Q
Sbjct: 1   MAPDPNNASGSGSGATARDEASVKVPSKDPKKKDEKKDEDLSDEDLALKQQLELYVERAQ 60

Query: 57  DPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMAD 116
           DPDP LQKVALESMR EIRTSTSSMTSVPKPLKFLRPHYGTLKA+YETM DSDLKK +AD
Sbjct: 61  DPDPALQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAFYETMTDSDLKKLLAD 120

Query: 117 ILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDD 176
           ILSVLALTMSAEGERESLKYRLLGSE DIGSWGHEYVRNLAGE AQEYAKRQ++E+SIDD
Sbjct: 121 ILSVLALTMSAEGERESLKYRLLGSESDIGSWGHEYVRNLAGECAQEYAKRQSEESSIDD 180

Query: 177 LMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGP 236
           LMELV +IVAFHMKHNAEPEAVDLLMEVEDLDLL++HVD+TNFKRTCLYLTSAA+YLPGP
Sbjct: 181 LMELVTQIVAFHMKHNAEPEAVDLLMEVEDLDLLIDHVDSTNFKRTCLYLTSAARYLPGP 240

Query: 237 DDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGI 296
           DDMLVLDIAYMIY+K+EE+ NALQIALFLDNMQYVKQ+FT CDD+LRKKQF YI+ARHGI
Sbjct: 241 DDMLVLDIAYMIYIKYEEYSNALQIALFLDNMQYVKQVFTVCDDVLRKKQFSYIVARHGI 300

Query: 297 TLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRAS 356
           T ELDD++  DD+DR ALQDIVNN KLSEGYLTLARDIEVMEPKSP+DIYKAHLLDGRAS
Sbjct: 301 TFELDDEVAADDEDREALQDIVNNTKLSEGYLTLARDIEVMEPKSPDDIYKAHLLDGRAS 360

Query: 357 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 416
           AG SVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD+SSGGSSGNWLFKNKEHGK SAAA
Sbjct: 361 AGVSVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSSSGGSSGNWLFKNKEHGKASAAA 420

Query: 417 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR 476
           SLGMILLWDVDSGLAQIDKYFHS DNHVIAGALLGVGIVNC I+NDCDPALALL +Y+ +
Sbjct: 421 SLGMILLWDVDSGLAQIDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPALALLGDYIDK 480

Query: 477 EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE 536
           ED+ IRIGAIMGLGI+YAG+QN+QIR KLS ILNDAK+PLDVIAF+AISLGLIYVGSCNE
Sbjct: 481 EDSSIRIGAIMGLGIAYAGSQNEQIRFKLSPILNDAKAPLDVIAFTAISLGLIYVGSCNE 540

Query: 537 EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD 596
           EVAQAIIFALMDRSESEL EPLTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD
Sbjct: 541 EVAQAIIFALMDRSESELQEPLTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD 600

Query: 597 MTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656
           MTLLSCAYAGTGNVLKVQNLLGHCAQH EKGE +QGPAVLGIAMVAMAEELGLEMAIRSL
Sbjct: 601 MTLLSCAYAGTGNVLKVQNLLGHCAQHLEKGETHQGPAVLGIAMVAMAEELGLEMAIRSL 660

Query: 657 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716
           EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG+G
Sbjct: 661 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAG 720

Query: 717 TNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAG 776
           TNNARIAGMLRNLSSYYYKDA+LLFCVRIAQGLVH+GKGLLTLNPYHSDRFLLSPTALAG
Sbjct: 721 TNNARIAGMLRNLSSYYYKDASLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSPTALAG 780

Query: 777 IVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQ 836
           ++T L ACLDMKA+I+GKYHYVLYFLVLAMQPRML+TVDENLKPLSVPVRVGQAVDVVGQ
Sbjct: 781 LITMLHACLDMKAIILGKYHYVLYFLVLAMQPRMLMTVDENLKPLSVPVRVGQAVDVVGQ 840

Query: 837 AGRPKTITGFQTHSTPVLLAAGDRAELATEK 867
           AGRPKTITGFQTHSTPVLLAAGDRAELATEK
Sbjct: 841 AGRPKTITGFQTHSTPVLLAAGDRAELATEK 871

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225446449\|ref\|XP_002277029.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A [Vitis vinifera] gi\|302143338\|emb\|CBI21899.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449453553\|ref\|XP_004144521.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Cucumis sativus] gi\|449522658\|ref\|XP_004168343.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356542984\|ref\|XP_003539943.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|356517488\|ref\|XP_003527419.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|357474441\|ref\|XP_003607505.1\| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi\|355508560\|gb\|AES89702.1\| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi|18399399|ref|NP_565477.1| 26S proteasome regulatory subunit N1 [Arabidopsis thaliana] gi|75265911|sp|Q9SIV2.2|RPN1A_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1A; AltName: Full=26S proteasome regulatory subunit RPN1 A; Short=AtRPN1a; AltName: Full=26S proteasome regulatory subunit S2 1A gi|13430608|gb|AAK25926.1|AF360216_1 putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] gi|14532874|gb|AAK64119.1| putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] gi|20198043|gb|AAD21708.2| 26S proteasome regulatory subunit S2 (RPN1) [Arabidopsis thaliana] gi|32700010|gb|AAP86655.1| 26S proteasome subunit RPN1a [Arabidopsis thaliana] gi|330251938|gb|AEC07032.1| 26S proteasome regulatory subunit N1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224132892\|ref\|XP_002327906.1\| predicted protein [Populus trichocarpa] gi\|222837315\|gb\|EEE75694.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297832660\|ref\|XP_002884212.1\| AtRPN1a/RPN1A [Arabidopsis lyrata subsp. lyrata] gi\|297330052\|gb\|EFH60471.1\| AtRPN1a/RPN1A [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224095561\|ref\|XP_002310411.1\| predicted protein [Populus trichocarpa] gi\|222853314\|gb\|EEE90861.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		872
TAIR\|locus:2046016		891	RPN1A "26S proteasome regulato	0.993	0.971	0.767	0.0
TAIR\|locus:2121358		891	RPN1B "26S proteasome regulato	0.990	0.969	0.743	0.0
UNIPROTKB\|E2RCP9		908	PSMD2 "Uncharacterized protein	0.650	0.624	0.466	5e-214
RGD\|1305752		908	Psmd2 "proteasome (prosome, ma	0.650	0.624	0.464	8.1e-214
UNIPROTKB\|P56701		908	PSMD2 "26S proteasome non-ATPa	0.650	0.624	0.463	8.1e-214
UNIPROTKB\|Q13200		908	PSMD2 "26S proteasome non-ATPa	0.650	0.624	0.463	8.1e-214
UNIPROTKB\|I3LEW5		908	PSMD2 "Uncharacterized protein	0.650	0.624	0.463	8.1e-214
MGI\|MGI:1096584		908	Psmd2 "proteasome (prosome, ma	0.650	0.624	0.464	1e-213
UNIPROTKB\|Q5R9I6		908	PSMD2 "26S proteasome non-ATPa	0.650	0.624	0.461	1e-213
ZFIN\|ZDB-GENE-040426-1480		897	psmd2 "proteasome (prosome, ma	0.647	0.629	0.463	1.7e-211

TAIR\|locus:2046016 RPN1A "26S proteasome regulatory subunit S2 1A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3382 (1195.6 bits), Expect = 0., P = 0.
 Identities = 667/869 (76%), Positives = 733/869 (84%)

Query:     1 MAP--DPNSASGSGTKDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQLELYVERVQDP 58
             MAP  DPNS  G   KDE                             Q LELYVERVQDP
Sbjct:     1 MAPTQDPNSVGGGAKKDEATLKVPSKDPKKKDEKKDEDLSEEDLELKQNLELYVERVQDP 60

Query:    59 DPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADIL 118
             +P LQK ALESMR EIR STSSMTSVPKPLKFLRPHYGTLKA++ETM DSDLKKY++DIL
Sbjct:    61 NPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPHYGTLKAFHETMADSDLKKYLSDIL 120

Query:   119 SVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLM 178
             SVLALTMSA+GERESL++RL+G+EGDIGSWGHEYVRNLAGEIAQEY KRQ++EASIDDLM
Sbjct:   121 SVLALTMSADGERESLRFRLIGTEGDIGSWGHEYVRNLAGEIAQEYTKRQSEEASIDDLM 180

Query:   179 ELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDD 238
             ELVQ+IVAFHMKHNAE                      TNFKRTC YLTSAA+YLPGPDD
Sbjct:   181 ELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVDKTNFKRTCNYLTSAARYLPGPDD 240

Query:   239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITL 298
             MLVLDI+YMIY+KFEE+PNALQIALFLDN QYVKQ+FTSC DLL+KKQFCY++ARHGIT 
Sbjct:   241 MLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGITF 300

Query:   299 ELXXXXXXXXXXRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG 358
             EL          R ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+G
Sbjct:   301 ELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASSG 360

Query:   359 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
             ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD+++G SSGNWLFKNKEHGK SAAASL
Sbjct:   361 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSTTG-SSGNWLFKNKEHGKTSAAASL 419

Query:   419 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED 478
             GMI LWDVDSGL+Q+DKYFHS DN +IAGALLGVGIVNCGI+NDCDPALALL +Y+ +ED
Sbjct:   420 GMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKED 479

Query:   479 ACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV 538
             + +RIGAIMGLGISYAG+QNDQIR+KLS ILNDAK+PLDVIAF+++SLG+IYVGSCNEEV
Sbjct:   480 SSVRIGAIMGLGISYAGSQNDQIRNKLSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEV 539

Query:   539 AQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMT 598
             AQ+IIFALMDRSE+ELG+                KQESVEATAEVSKTFNEKIRKYCDMT
Sbjct:   540 AQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 599

Query:   599 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658
             LLSCAYAGTGNVLKVQ+LL  C +H EKG+ +QGPAVLG+AMVAM+EELG++M IRSLE 
Sbjct:   600 LLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIHQGPAVLGLAMVAMSEELGVDMEIRSLER 659

Query:   659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718
             +LQYGEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAM+A+ISLGLIG+GTN
Sbjct:   660 MLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLIGAGTN 719

Query:   719 NARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIV 778
             NARIAGMLRNLSSYYYKD +LLFCVRIAQGLVHMGKGLLTL+P+HS+RFLLSPTALAGIV
Sbjct:   720 NARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMGKGLLTLSPFHSERFLLSPTALAGIV 779

Query:   779 TTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXX 838
             T L ACLDMK +I+GKYHYVLYFLVLAMQPRM+LTVDENLKPLS                
Sbjct:   780 TLLHACLDMKPIILGKYHYVLYFLVLAMQPRMMLTVDENLKPLSVPVRVGQAVDVVGQAG 839

Query:   839 XPKTITGFQTHSTPVLLAAGDRAELATEK 867
              PKTITGFQTHSTPVLLAAG+RAELAT+K
Sbjct:   840 RPKTITGFQTHSTPVLLAAGERAELATDK 868

GO:0000502 "proteasome complex" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISS;IDA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0030163 "protein catabolic process" evidence=TAS

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR\|locus:2121358 RPN1B "26S proteasome regulatory subunit S2 1B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCP9 PSMD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1305752 Psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P56701 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13200 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LEW5 PSMD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1096584 Psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R9I6 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1480 psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6XJG8	RPN1B_ARATH	No assigned EC number	0.8300	0.9908	0.9696	no	no
Q4FZT9	PSMD2_RAT	No assigned EC number	0.5253	0.9690	0.9306	yes	no
Q54BC6	PSMD2_DICDI	No assigned EC number	0.4836	0.9483	0.9260	yes	no
Q5R9I6	PSMD2_PONAB	No assigned EC number	0.5207	0.9724	0.9339	yes	no
P87048	RPN1_SCHPO	No assigned EC number	0.4782	0.9724	0.9517	yes	no
Q13200	PSMD2_HUMAN	No assigned EC number	0.5218	0.9724	0.9339	yes	no
P56701	PSMD2_BOVIN	No assigned EC number	0.5207	0.9747	0.9361	yes	no
Q9SIV2	RPN1A_ARATH	No assigned EC number	0.8596	0.9931	0.9719	yes	no
Q8VDM4	PSMD2_MOUSE	No assigned EC number	0.5253	0.9690	0.9306	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	RPN1A	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator; encoding the RPN subunits of the 26S proteasome (891 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RPT2a	RPT2a (regulatory particle AAA-ATPase 2a); ATPase; 26S proteasome AAA-ATPase subunit RPT2a (RPT [...] (443 aa)	•	•	•	•	0.999
	AT5G23540	26S proteasome regulatory subunit, putative; 26S proteasome regulatory subunit, putative; INVOL [...] (308 aa)	•	•	•	•	0.997
	RPN8A	RPN8A (RP NON-ATPASE SUBUNIT 8A); Encodes a putative 26S proteasome subunit RPN8a. The function [...] (308 aa)	•	•	•	•	0.997
	RPT5A	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding; Encodes RPT5a (Regu [...] (424 aa)	•	•	•	•	0.997
	RPN12a	RPN12a (Regulatory Particle non-ATPase 12a); peptidase; Regulatory Particle non-ATPase 12a (RPN [...] (267 aa)	•	•	•	•	0.997
	EMB2719	EMB2719 (EMBRYO DEFECTIVE 2719); enzyme regulator; EMBRYO DEFECTIVE 2719 (EMB2719); FUNCTIONS I [...] (488 aa)	•	•	•	•	0.996
	RPT1A	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase; 26S proteasome AAA-ATPase subunit RPT1a (RPT1a [...] (426 aa)	•	•	•	•	0.996
	AT4G24820	26S proteasome regulatory subunit, putative (RPN7); 26S proteasome regulatory subunit, putative [...] (387 aa)	•	•	•	•	0.995
	AT5G20000	26S proteasome AAA-ATPase subunit, putative; 26S proteasome AAA-ATPase subunit, putative; FUNCT [...] (419 aa)	•	•	•	•	0.994
	RPN10	RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor; Regulatory particle non-ATPase sub [...] (386 aa)	•	•	•	•	0.992

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		872
COG5110		881	COG5110, RPN1, 26S proteasome regulatory complex c	0.0
COG5116		926	COG5116, RPN2, 26S proteasome regulatory complex c	1e-21

>gnl\|CDD\|227441 COG5110, RPN1, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  822 bits (2124), Expect = 0.0
 Identities = 356/870 (40%), Positives = 529/870 (60%), Gaps = 28/870 (3%)

Query: 7   SASGSGTKDEASVKVPAK-DPKKKDDKKDE--DLSEEDLALKQQLELYVERVQDPDPGLQ 63
           S     T DE S   P K  P KKD KK+E   LSEED  LK  LEL VER+QDPD  LQ
Sbjct: 5   SDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQ 64

Query: 64  KVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLAL 123
             +L  ++  I++STSSMT+VPKPLKFLRP+Y  L   Y+   + + K+++ADILS L +
Sbjct: 65  NNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCM 124

Query: 124 TMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEA-SIDDLMELVQ 182
             S  G+ +SL YRL G+  D+  WGHEYVR+LAGEIA+    +   +A S  D  +L  
Sbjct: 125 VYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGL 184

Query: 183 EIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVL 242
           EIV F +KHNAE +A+DLL+EV  ++ +++ VD  N+ R CLYL      LP P+D+ +L
Sbjct: 185 EIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALL 244

Query: 243 DIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDD 302
           + A  IYLK  +   A+  A+ L   + + +   + +D   KKQ  YILAR  +  E  D
Sbjct: 245 ETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASD 304

Query: 303 DMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG-ASV 361
           +           +DI++N  LS+ +  L +++ + +PK PEDI K HL   + +   A +
Sbjct: 305 E---------EEKDILSNGYLSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGI 355

Query: 362 DSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMI 421
            SA QNLA  FVN  +N G+  D L  +P D         W++K K  G +SA AS+G+I
Sbjct: 356 GSANQNLAMGFVNDPINLGYENDSL--IPLDD-------EWIYKCKVPGLISAFASIGVI 406

Query: 422 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACI 481
             W+ D GL  +DKY ++ +++  AGALLG+G+    +  +  PALALLS Y+    +  
Sbjct: 407 ESWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKH 466

Query: 482 RIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQA 541
            I AI+GLG +++GTQ +++   L  I+    SP++V+ F++++LG ++VG+CN ++   
Sbjct: 467 VIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSL 526

Query: 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601
           I+   ++R + E      R + LGL  L+ G+++ V+   E        + K+ ++ +  
Sbjct: 527 ILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKG 586

Query: 602 CAYAGTGNVLKVQNLLGHCAQ-----HHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656
           C Y GTG+VL +Q+LL    +        +    +  A+LG A++AM E++G EM +R  
Sbjct: 587 CQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHF 646

Query: 657 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716
            H + YG  +IR  +PLA G+L  SNP++NV DTL R SHD D  V +  + ++GLIG+G
Sbjct: 647 SHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGAG 706

Query: 717 TNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAG 776
           T NAR+A +LR L+SYYYK++  LF +RIAQGL+ +GKG +T++P + D+  L P   AG
Sbjct: 707 TLNARLAQLLRQLASYYYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAG 766

Query: 777 IVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQ 836
           + TT+F  LD     +   H ++YFL+  ++P+  +T+ E  +P+ V VRVGQAV+ VGQ
Sbjct: 767 LFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKYVTLSEKGEPIKVNVRVGQAVNTVGQ 826

Query: 837 AGRPKTITGFQTHSTPVLLAAGDRAELATE 866
           AGRPK ITG+QTH+TPVLL+  +RAEL T+
Sbjct: 827 AGRPKKITGWQTHTTPVLLSHKERAELDTD 856

Length = 881

>gnl\|CDD\|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		872
KOG2005		878	consensus 26S proteasome regulatory complex, subun	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG2062		929	consensus 26S proteasome regulatory complex, subun	100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
KOG2062		929	consensus 26S proteasome regulatory complex, subun	100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
KOG2005		878	consensus 26S proteasome regulatory complex, subun	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	99.97
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	99.46
PRK09687		280	putative lyase; Provisional	99.19
PRK09687		280	putative lyase; Provisional	99.14
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.05
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.78
TIGR02270		410	conserved hypothetical protein. Members are found	98.26
TIGR02270		410	conserved hypothetical protein. Members are found	98.25
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.19
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.89
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.86
KOG0567		289	consensus HEAT repeat-containing protein [General	97.72
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.69
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.68
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.6
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.43
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.88
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.86
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	96.83
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.74
PTZ00429		746	beta-adaptin; Provisional	96.51
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.45
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.34
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.08
PRK11788		389	tetratricopeptide repeat protein; Provisional	95.92
KOG0567		289	consensus HEAT repeat-containing protein [General	95.77
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.53
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.49
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.4
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.99
PTZ00429		746	beta-adaptin; Provisional	94.68
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	93.95
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.31
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	93.13
PRK11788		389	tetratricopeptide repeat protein; Provisional	92.9
KOG1824		1233	consensus TATA-binding protein-interacting protein	92.73
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	92.67
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	92.43
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	92.28
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	92.22
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	91.04
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.55
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	90.18
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	89.96
PRK12370		553	invasion protein regulator; Provisional	89.67
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	89.58
COG5096		757	Vesicle coat complex, various subunits [Intracellu	89.13
PF05004		309	IFRD: Interferon-related developmental regulator (	88.08
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	87.98
KOG2259		823	consensus Uncharacterized conserved protein [Funct	87.94
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	87.53
KOG1824		1233	consensus TATA-binding protein-interacting protein	86.37
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	84.59
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	84.5
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	84.37
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	84.35
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	83.0
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	82.91
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	82.9
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	82.44
PRK12370		553	invasion protein regulator; Provisional	81.87
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	81.13
COG3118		304	Thioredoxin domain-containing protein [Posttransla	80.35

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.6e-233  Score=1919.66  Aligned_cols=832  Identities=65%  Similarity=1.008  Sum_probs=803.9

Q ss_pred             CCCCCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHh
Q 002870           24 KDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE  103 (872)
Q Consensus        24 ~~~~~~~~~~~~~l~eed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye  103 (872)
                      ++.++|+++|||+|||||+|||++||++|+|++|+|++|+++||++|+++||+|||||||||||||||||||++|+++|+
T Consensus        26 k~~~~k~~~k~e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~  105 (878)
T KOG2005|consen   26 KKNKKKDKDKEEDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYE  105 (878)
T ss_pred             cccccccchhhhhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHH
Confidence            33445666677999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHH
Q 002870          104 TMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQE  183 (872)
Q Consensus       104 ~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~~~~~~L~~lv~~  183 (872)
                      +|.+++.|+.+|||+|||+|||+.  ..+.|+|||.|+..|+++||||||||||+||.++|+++....+.+++|..|+.+
T Consensus       106 ~~~~~n~Kk~laDIlSvLamt~se--~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~  183 (878)
T KOG2005|consen  106 SMADSNLKKWLADILSVLAMTMSE--RGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQE  183 (878)
T ss_pred             hccCchhHhHHHHHHHHHheeecc--cchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence            999999999999999999999984  457799999999999999999999999999999999965555668999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccchHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHHHHHHHH
Q 002870          184 IVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIAL  263 (872)
Q Consensus       184 iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~k~~~~~~al~~al  263 (872)
                      ||+||||||+|.||||+++|+++||++.+|||++||+|+|+|+.+|++++|+|+|..++++++.||+|+++|++|+++||
T Consensus       184 iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai  263 (878)
T KOG2005|consen  184 IVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAI  263 (878)
T ss_pred             HHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHhcchHHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChH
Q 002870          264 FLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPE  343 (872)
Q Consensus       264 ~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~~  343 (872)
                      +++|.+.|+++|.+|+|+.++||+||+||||++.+++.+        ++.+++|++|.+++++|++++||+++++||+||
T Consensus       264 ~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~--------~e~l~di~sN~~Lse~f~~LarELeimepk~pe  335 (878)
T KOG2005|consen  264 RLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE--------DEELQDILSNGKLSEHFLYLARELEIMEPKVPE  335 (878)
T ss_pred             hcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCc--------CHHHHHHHccccHHHHHHHHHHHhcccCCCChH
Confidence            999999999999999999999999999999999998742        478999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHHHhhhhcc
Q 002870          344 DIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILL  423 (872)
Q Consensus       344 ~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~aslGlI~~  423 (872)
                      +|||+|++++|...+.++||||||+|++|||||||+|||+||+|.+..+     +..+|+||||++++.+|+||+|+|.+
T Consensus       336 dIyK~hl~~~r~~s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~-----s~~~w~yknke~g~~sa~aS~G~I~~  410 (878)
T KOG2005|consen  336 DIYKSHLEDSRGGSGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEG-----SRVNWLYKNKEHGMTSAAASLGMIQL  410 (878)
T ss_pred             HHHHHHHhccccccccCccHHHHHHHHHHHHHHhhcccCCCceeccCcc-----ccCcceeeccccCchHhhhhcchhhe
Confidence            9999999998966678999999999999999999999999999998753     46679999999999999999999999


Q ss_pred             ccchhhHHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHH
Q 002870          424 WDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRH  503 (872)
Q Consensus       424 ~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~~~i~e  503 (872)
                      ||+|.|++++++|++++++|+++|||+|+|++++|+++||||++++|++|+.+++..+|+||+||||++|+||+++++..
T Consensus       411 Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~  490 (878)
T KOG2005|consen  411 WNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE  490 (878)
T ss_pred             ecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHH
Q 002870          504 KLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV  583 (872)
Q Consensus       504 ~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~  583 (872)
                      .|.|++.|++.++|+.++|+|+||+||+||||++++..|++++|++.++++.+.|.||+++|||++|+|++|++|++.+.
T Consensus       491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~  570 (878)
T KOG2005|consen  491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVET  570 (878)
T ss_pred             HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            99999999888999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhHHHHHHhhhcCCCHHHH--HHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhh
Q 002870          584 SKTFNEKIRKYCDMTLLSCAYAGTGNVLKV--QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ  661 (872)
Q Consensus       584 L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i--~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~  661 (872)
                      ++++++|+.++..+++.+|||+||||+.+|  |.++|+|.+|..+.+..+..||+|+|+|+||+++|++|+.|+|+|+++
T Consensus       571 ~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~  650 (878)
T KOG2005|consen  571 IKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLH  650 (878)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999  889999999987644566799999999999999999999999999999


Q ss_pred             cCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHH
Q 002870          662 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLF  741 (872)
Q Consensus       662 ~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~rv~~~lr~l~s~~~~d~~~~f  741 (872)
                      |++|+||+++|+|+|++|+|||+.+++|+|++++||.|.+|..+||||||+|||||||+|++++||||+|||+||+.++|
T Consensus       651 yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf  730 (878)
T KOG2005|consen  651 YGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALF  730 (878)
T ss_pred             cCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhcccceeeeecCCCCcc
Q 002870          742 CVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPL  821 (872)
Q Consensus       742 ~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h~l~~~l~lA~~Pr~li~ld~~l~~~  821 (872)
                      .+||||||+|+|||++|++|+|+||++++|+|+|||++++++++|++.+++.++||++|||++||+|||++|+|+++||+
T Consensus       731 ~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl  810 (878)
T KOG2005|consen  731 VVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPL  810 (878)
T ss_pred             HHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccchhccchHHHHHHHHHHhhCceEEEeecccCccc
Confidence            99999999999999999999999999999999999999999999999666668999999999999999999999999999


Q ss_pred             ceeeeecccccccccCCccceeeceeeeecceeecccceeeeccccccc
Q 002870          822 SVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKSDI  870 (872)
Q Consensus       822 ~v~vrvgqavd~vg~ag~pk~itg~qt~~tpvll~~~erael~~~~y~~  870 (872)
                      +|+|||||||||||||||||||||||||||||||+||||||||||||+-
T Consensus       811 ~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahgeRAElatd~y~p  859 (878)
T KOG2005|consen  811 PVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHGERAELATDEYLP  859 (878)
T ss_pred             cceeeccchhhhhhccCCCceecceeccCcceecccchhhhhccccccc
Confidence            9999999999999999999999999999999999999999999999953

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		872
4b4t_N		945	Near-Atomic Resolution Structural Model Of The Yeas		4e-12
4ady_A		963	Crystal Structure Of 26s Proteasome Subunit Rpn2 Le		5e-08

>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 945

Back alignment and structure

Iteration: 1

Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 97/425 (22%), Positives = 183/425 (43%), Gaps = 36/425 (8%) Query: 369 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 428 A + N F++AG +D S ++ WL K + K +A ASLG+I ++ Sbjct: 331 AVSVANGFMHAG---------TTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE 381 Query: 429 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDCDPALALL----SEYVGREDACI 481 G + Y ++ + G+L G+G++ G D L + S G ED + Sbjct: 382 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV 441 Query: 482 RI-GAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSAISLGLIYVGSCNEEVA 539 + GA +G+G++ G+ N ++ L +L ND+ + + +A+ +GL +G+ E Sbjct: 442 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEA---AALGMGLCMLGTGKPEA- 497 Query: 540 QAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTL 599 I + S+ +QE + +E + +Y Sbjct: 498 ---IHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFT 554 Query: 600 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 659 ++ AYAGTGN V+ LL H A + + AV+ + V + + + R ++ L Sbjct: 555 IALAYAGTGNNSAVKRLL-HVAVSDSNDDVRRA-AVIALGFVLLRDYTTVP---RIVQLL 609 Query: 660 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI---GSG 716 + ++R ALG+ C + +D L L+ D V AA+I+L +I + Sbjct: 610 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 669 Query: 717 TNNARIAGMLRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTA 773 N ++A + +N S +++ F +AQG+++ G +T+ ++D L + Sbjct: 670 KLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKS 729 Query: 774 LAGIV 778 + G+V Sbjct: 730 VVGLV 734

PyMOL of 4b4t

>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2 Length = 963

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		872
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	2e-05
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	8e-05
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	2e-04

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

 Score =  584 bits (1507), Expect = 0.0
 Identities = 140/819 (17%), Positives = 311/819 (37%), Gaps = 107/819 (13%)

Query: 51  YVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDL 110
            +  +++    ++  ALES+   +    S +++              ++A Y+    SD 
Sbjct: 20  LLALLRENQDSVKTYALESINNVVDQLWSEISN----------ELPDIEALYDDDTFSD- 68

Query: 111 KKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTD 170
           ++  A I S +    +      ++KY L   +        ++V  +  +  + Y +  + 
Sbjct: 69  REMAALIASKV--YYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASK 126

Query: 171 EASIDD-----------LMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLL-------VE 212
           + + D+           L  + + ++   +K +    A+ + +E   LD++       ++
Sbjct: 127 QYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLD 186

Query: 213 HVDATNFKRTCLYLTSAAKYLPGPDD--MLVLDIAYMIYLKFE--EFPNALQIALFLDNM 268
               +   +   YL + A            +L  ++   +     ++    ++ + L++ 
Sbjct: 187 QDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDA 246

Query: 269 QYVKQIFTSC---DDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSE 325
               Q+F      +D     Q  + L                      L +I+     ++
Sbjct: 247 GLALQLFKKLKEENDEGLSAQIAFDLVSSA---------------SQQLLEILVTELTAQ 291

Query: 326 GYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNL---------AATFVNAF 376
           GY     +I  +      D Y   LL+ +      ++ ++ +L         A +  N F
Sbjct: 292 GYDPALLNI--LSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGF 349

Query: 377 VNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKY 436
           ++AG   +  +          ++  WL K +   K +A ASLG+I   ++  G   +  Y
Sbjct: 350 MHAGTTDNSFIK---------ANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPY 400

Query: 437 F---HSTDNHVIAGALLGVGIVNCGIRNDCDPALALL-----SEYVGREDACIRIGAIMG 488
                ++   +  G+L G+G++  G   D    L  +           +   +  GA +G
Sbjct: 401 LPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460

Query: 489 LGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD 548
           +G++  G+ N ++   L  +L +  +     A  A+ +GL  +G+   E    +     +
Sbjct: 461 IGLAAMGSANIEVYEALKEVLYNDSATSGEAA--ALGMGLCMLGTGKPEAIHDMFTYSQE 518

Query: 549 RSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTG 608
                    +TR + +GL L+  G+QE  +         +E + +Y     ++ AYAGTG
Sbjct: 519 TQH----GNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574

Query: 609 NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIR 668
           N   V+ LL          +  +  AV+ +  V + +        R ++ L +    ++R
Sbjct: 575 NNSAVKRLLHVAVSDSN--DDVRRAAVIALGFVLLRDY---TTVPRIVQLLSKSHNAHVR 629

Query: 669 RAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGM 725
                ALG+ C      + +D L  L+ D    V  AA+I+L +I        N ++A +
Sbjct: 630 CGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI 689

Query: 726 LRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLF 782
            +N  S     +++    F   +AQG+++ G   +T+   ++D   L   ++ G+V    
Sbjct: 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQ 749

Query: 783 ACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPL 821
                       +  + +FL L+  P  ++ +  + + +
Sbjct: 750 F---------WYWFPLAHFLSLSFTPTTVIGIRGSDQAI 779

PyMOL of 4ady

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		872
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	98.86
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	98.86
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	98.71
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	98.65
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.53
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.52
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	98.48
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	98.48
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.43
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.3
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.26
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.25
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.23
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.19
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.19
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.18
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.1
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.03
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	98.0
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	97.98
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.88
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.85
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.85
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	97.7
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.6
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	97.59
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.58
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.56
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.55
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	97.54
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.52
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	97.46
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	97.45
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	97.42
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.41
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.4
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.37
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.27
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.26
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	97.26
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.25
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.22
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.15
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.07
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.03
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.95
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.66
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	96.63
1qgr_A		876	Protein (importin beta subunit); transport recepto	96.43
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.16
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	96.12
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	96.11
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	96.09
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.89
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	95.75
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	95.7
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.38
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	95.37
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	95.0
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.61
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	94.51
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	94.5
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	94.21
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	94.11
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	94.05
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	93.92
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	93.9
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	93.83
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	93.65
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	93.38
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	92.23
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	91.97
3nmz_A		458	APC variant protein; protein-protein complex, arma	91.94
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	91.38
2gw1_A		514	Mitochondrial precursor proteins import receptor;	90.22
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	89.75
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	89.4
3nmz_A		458	APC variant protein; protein-protein complex, arma	89.39
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	89.35
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	88.49
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	87.46
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	86.93
2gw1_A		514	Mitochondrial precursor proteins import receptor;	86.72
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	86.53
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	86.46
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	86.07
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	85.33
1lsh_A		1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	85.01
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	84.51
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	83.59
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	82.13
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	82.05
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	81.96
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	81.76
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	81.13
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	80.49
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	80.12
3qou_A		287	Protein YBBN; thioredoxin-like fold, tetratricopep	80.09

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

Probab=100.00  E-value=3.8e-155  Score=1401.24  Aligned_cols=732  Identities=19%  Similarity=0.277  Sum_probs=683.6

Q ss_pred             HHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHhcCCCcchHHHHHHHHHHHhhhccCc
Q 002870           49 ELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAE  128 (872)
Q Consensus        49 ~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye~~~~~~~k~~~AdilS~l~~t~~~~  128 (872)
                      ..++++|+|+|++|+.+||++|+++|+++          |.++.++++.||++||+++|+ .|+++|+|+||||  ||++
T Consensus        18 ~~~l~lL~e~~~~lk~~aL~~l~~~vd~~----------w~eia~~i~~ie~l~ed~~f~-~r~laalvaSkvy--y~Lg   84 (963)
T 4ady_A           18 APLLALLRENQDSVKTYALESINNVVDQL----------WSEISNELPDIEALYDDDTFS-DREMAALIASKVY--YNLG   84 (963)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----------HHHHHTTHHHHHHHHSCTTCT-THHHHHHHHHHHH--HHHT
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhhh----------HHHHHhhHHHHHHHHcCCCcc-hHHHHHHHHHHHh--eecc
Confidence            46899999999999999999999999999          679999999999999999998 6999999999998  8999


Q ss_pred             ccccchhhhhc-CCCCCCCCcccHHHHHHHHHHHHHHHHhccCc----c------CH-HHHHHHHHHHHHHHhcCCCHHH
Q 002870          129 GERESLKYRLL-GSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDE----A------SI-DDLMELVQEIVAFHMKHNAEPE  196 (872)
Q Consensus       129 ~~~~~L~y~L~-~~~~d~~~wgheYvr~L~~ei~~~y~~~~~~~----~------~~-~~L~~lv~~iv~~~l~~n~e~e  196 (872)
                      +++|||+|||. |+.||+.+ |||||+||+++|||+|++.+.+.    +      .+ ++|++||++||+||++||+|+|
T Consensus        85 ~~~~al~yaL~aG~~fd~~~-~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~  163 (963)
T 4ady_A           85 EYESAVKYALAAKDRFDIDE-KSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKL  163 (963)
T ss_dssp             CHHHHHHHHHHHGGGSCTTS-CSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             chHHHHHHHHhCCCcCCCCC-cchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCHHH
Confidence            99999999999 58899998 89999999999999999886532    1      23 6999999999999999999999


Q ss_pred             HHHHHHhcCChhhhHHHhhc-------cchHHHHHHHHhhcccCCCCChH--HHHHHHHHHHHccC--CHHHHHHHHHhC
Q 002870          197 AVDLLMEVEDLDLLVEHVDA-------TNFKRTCLYLTSAAKYLPGPDDM--LVLDIAYMIYLKFE--EFPNALQIALFL  265 (872)
Q Consensus       197 AvdlalE~~~ld~i~~~vd~-------~~~~rv~~Yl~~~~~~~~~p~~~--~vl~~~~~iy~k~~--~~~~al~~al~l  265 (872)
                      |||||||++|||+|+++|++       +||.|+|+|+++|++++++|+++  +||+++++||++++  +|+++|+|+++|
T Consensus       164 AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~L  243 (963)
T 4ady_A          164 ALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNL  243 (963)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHc
Confidence            99999999999999999998       89999999999999999999986  89999999999987  999999999999


Q ss_pred             CChHHHHHHHHh---cchHHHHHHHHHHHHh---hcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCC
Q 002870          266 DNMQYVKQIFTS---CDDLLRKKQFCYILAR---HGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEP  339 (872)
Q Consensus       266 ~d~~~i~~i~~~---~~d~~~~~Qlaf~lar---q~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~  339 (872)
                      ||++.++++|++   |+|++++|||||+|+|   |+|+.++.+... ..+..+++.+||+|..++++|++|++++|.+|+
T Consensus       244 nD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~-~~e~~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~  322 (963)
T 4ady_A          244 NDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELT-AQGYDPALLNILSGLPTCDYYNTFLLNNKNIDI  322 (963)
T ss_dssp             TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HTTCCHHHHHHTTSHHHHHHHHHHHHHHCCCCH
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhcc-ccchhHHHHHHhCCCChHHHHHHHHHhccccch
Confidence            999999999999   6899999999999996   566654411000 011357899999999999999999999999999


Q ss_pred             CChHHHHHhhhccCCCCcCcchhHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccCchhHHHHHHHhh
Q 002870          340 KSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLG  419 (872)
Q Consensus       340 k~~~~iyK~~l~~~r~~~~~~~dsa~~~la~~~~nafvnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~~A~aslG  419 (872)
                      ++|+++ |++++ +|        ++++|+|++|+|||||+||++|+||+.+.+         |++|+++|+||+|++|||
T Consensus       323 ~~l~~~-K~~ld-~r--------~s~~~~A~~f~Naf~naG~~~D~~l~~~~~---------Wl~k~~~~~k~sA~aSLG  383 (963)
T 4ady_A          323 GLLNKS-KSSLD-GK--------FSLFHTAVSVANGFMHAGTTDNSFIKANLP---------WLGKAQNWAKFTATASLG  383 (963)
T ss_dssp             HHHHHH-HHHSC-TT--------SHHHHHHHHHHHHHHTTTTCCCHHHHHCHH---------HHHHCCTHHHHHHHHHHH
T ss_pred             hhHHHH-Hhhhc-ch--------hhHHHHHHHHHHHHHhCCCCcchhhhcchh---------hhhccchHHHHHHHHHhh
Confidence            999987 99998 45        478999999999999999999999998866         999999999999999999


Q ss_pred             hhccccchhhHHhHhhhcc---CCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCC--------HHHHHHHHHH
Q 002870          420 MILLWDVDSGLAQIDKYFH---STDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED--------ACIRIGAIMG  488 (872)
Q Consensus       420 lI~~~~~~~~l~~l~~yL~---s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~--------~~v~~gA~lG  488 (872)
                      +||.||.++|+++|++||+   ++++++++||++|||++++|++++   ++++|.++|.+++        +.+|+||++|
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG  460 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---TTDYLKNIIVENSGTSGDEDVDVLLHGASLG  460 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence            9999999999999999999   678999999999999999999854   8999999998655        7899999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHh
Q 002870          489 LGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGL  568 (872)
Q Consensus       489 LGLay~Gt~~~~i~e~L~~~L~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgL  568 (872)
                      ||++|+||+++++++.|++++.|++  ..+..+|++|||+||+||||.++++.|++++++   ++ +++++|++++||||
T Consensus       461 LGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~-~e~vrR~aalgLGl  534 (963)
T 4ady_A          461 IGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQ-HGNITRGLAVGLAL  534 (963)
T ss_dssp             HHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CS-CHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cC-cHHHHHHHHHHHHh
Confidence            9999999999999999999998653  234458999999999999999999999999875   34 78999999999999


Q ss_pred             hhcCChhhHHHHHHHHhhhhhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhh
Q 002870          569 LYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELG  648 (872)
Q Consensus       569 l~~G~~e~a~~ll~~L~~~~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g  648 (872)
                      +++|++++++.+++.|..+++|+.||++++++||||+||||+.+||+|||.|.+|.++  +|||+||+|||+|++|++  
T Consensus       535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d--~VRraAViaLGlI~~g~~--  610 (963)
T 4ady_A          535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSND--DVRRAAVIALGFVLLRDY--  610 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTSSSC--
T ss_pred             hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcH--HHHHHHHHHHHhhccCCH--
Confidence            9999999999999999999999999999999999999999999999999999999887  899999999999999999  


Q ss_pred             HhHHHHHHHHHhhcCChhHHhHHHHHHhhhccCCCchHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCch---HHHHH
Q 002870          649 LEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNA---RIAGM  725 (872)
Q Consensus       649 ~e~~~~il~~L~~~~~~~VR~ga~lALGL~~agt~~~~aid~L~~l~~D~d~~Vr~~AiiAlGlV~aGt~n~---rv~~~  725 (872)
                       +|+++++++|++++||+||+|+|+|||++|+|||+++++++|++++||+|++||++|++|||+||+||||+   |++++
T Consensus       611 -e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~  689 (963)
T 4ady_A          611 -TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI  689 (963)
T ss_dssp             -SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH
Confidence             99999999999999999999999999999999999999999999999999999999999999999999987   99999


Q ss_pred             HHHhhhhhc---cChhhHHHHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchh-HHHHH
Q 002870          726 LRNLSSYYY---KDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYH-YVLYF  801 (872)
Q Consensus       726 lr~l~s~~~---~d~~~~f~~~lAqGll~~G~g~~tlsp~~sd~~~~~~~a~agLl~~l~~~~d~~~~i~~~~h-~l~~~  801 (872)
                      ||+|++||+   +|++++||+++||||+||||||+||||+||||++++++|++||++|+++|          || ||+||
T Consensus       690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~w----------yw~pl~~~  759 (963)
T 4ady_A          690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFW----------YWFPLAHF  759 (963)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTTT----------TCGGGGGG
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHHHHHH----------HHHHHHHH
Confidence            999999985   58999999999999999999999999999999999999999999998775          55 59999


Q ss_pred             HhhhcccceeeeecC-CCCccceeeeecccccccccCC
Q 002870          802 LVLAMQPRMLLTVDE-NLKPLSVPVRVGQAVDVVGQAG  838 (872)
Q Consensus       802 l~lA~~Pr~li~ld~-~l~~~~v~vrvgqavd~vg~ag  838 (872)
                      |+|||+|||+||+|+ |||+|+..++++.+-.....+.
T Consensus       760 lsla~~Pt~li~l~e~dL~~p~~~~~~~~~~~~f~yp~  797 (963)
T 4ady_A          760 LSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAFSYPR  797 (963)
T ss_dssp             GGGGEEECBEEEEETTTTBEECCEEEECSCTTTTCCCC
T ss_pred             HHHhcCCcEEEEecccccCCCceEEeeCCChhhcCCCC
Confidence            999999999999999 9999999999999999988765

PyMOL of 4ady

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		872
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.63
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.48
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.44
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.31
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.83
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.83
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.72
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.7
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.41
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.03
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.75
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.69
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.52
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.25
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.23
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.11
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.81
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	95.32
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.98
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	94.81
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.95
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	93.3
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	91.4
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	88.08
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	87.64
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	85.86
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	83.13
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	82.61
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	81.47

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.5e-06  Score=85.78  Aligned_cols=250  Identities=12%  Similarity=0.062  Sum_probs=119.8

Q ss_pred             HHhHhhhccCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCC-HHHHHHHHHH
Q 002870          430 LAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQN-DQIRHKLSTI  508 (872)
Q Consensus       430 l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~~~lL~~~L~~~~~~v~~gA~lGLGLay~Gt~~-~~i~e~L~~~  508 (872)
                      ...|.+.|.++++.+|.-|+-+||.+  |.    +.++..|...++++++.+|..|+.+||-....... ..+...|...
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~--~~----~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~   94 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLR--GG----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM   94 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHH--CC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhh--CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccchHHHHHHH
Confidence            34455667777777777777777754  21    23666667777777777777777777654332222 2334444443


Q ss_pred             h-cCCCCchHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHhhcCccccCchhHhHHHHHHHhhhcCChhhHHHHHHHHhhh
Q 002870          509 L-NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTF  587 (872)
Q Consensus       509 L-~d~~~~~e~~~~AaLALGLi~lGs~n~~~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~~G~~e~a~~ll~~L~~~  587 (872)
                      + .|+  +..+...|+.+||-+.-+.  ......++..+..... + .+..+|..+ ..++..+|.+.....++..+.. 
T Consensus        95 ~l~d~--~~~vr~~a~~aL~~~~~~~--~~~~~~~~~~l~~~~~-d-~~~~vr~~a-~~~l~~~~~~~~~~~l~~l~~~-  166 (276)
T d1oyza_          95 ALNDK--SACVRATAIESTAQRCKKN--PIYSPKIVEQSQITAF-D-KSTNVRRAT-AFAISVINDKATIPLLINLLKD-  166 (276)
T ss_dssp             HHHCS--CHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHTT-C-SCHHHHHHH-HHHHHTC---CCHHHHHHHHTC-
T ss_pred             HhcCC--ChhHHHHHHHHHHHHcccc--chhhHHHHHHHHHHhc-C-cchHHHHHH-HHHHhhcchHHHHHHHHHhccc-
Confidence            3 343  3455566777777653322  2222233333222111 1 122223221 2234445555555555544433 


Q ss_pred             hhhhhhhhhHHHHHHhhhcCCCHHHHHHHHHhhcccCCCCccchhhhHhHhhhhhhcchhhHhHHHHHHHHHhhcCChhH
Q 002870          588 NEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNI  667 (872)
Q Consensus       588 ~~~i~r~~~~~~~~lAyaGTGn~~~i~~LL~~~~~~~~d~~~vrr~Avl~iglI~~~~~~g~e~~~~il~~L~~~~~~~V  667 (872)
                      .++..+.....+  ....+.++...+..++....+ .+.  .++..+..+++-+  +.+   +.++.++..+ +  ++.|
T Consensus       167 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~al~~~--~~~---~~~~~L~~~l-~--d~~v  233 (276)
T d1oyza_         167 PNGDVRNWAAFA--ININKYDNSDIRDCFVEMLQD-KNE--EVRIEAIIGLSYR--KDK---RVLSVLCDEL-K--KNTV  233 (276)
T ss_dssp             SSHHHHHHHHHH--HHHHTCCCHHHHHHHHHHTTC-SCH--HHHHHHHHHHHHT--TCG---GGHHHHHHHH-T--SSSC
T ss_pred             ccchhhhhHHHH--HHhhhccccccchhhhhhhhh-hhh--hhhhhhccccchh--hhh---hhHHHHHHHh-C--ChHH
Confidence            233333332222  233445555555555544332 221  4555555554443  222   2333333333 2  3456


Q ss_pred             HhHHHHHHhhhccCCCchHHHHHHHHhhcC-CchHHHHHHHHHH
Q 002870          668 RRAVPLALGLLCISNPKVNVMDTLSRLSHD-TDSEVAMAAVISL  710 (872)
Q Consensus       668 R~ga~lALGL~~agt~~~~aid~L~~l~~D-~d~~Vr~~AiiAl  710 (872)
                      |..++.|||-+    |+++++..|..+..+ .|..||+.|+=+|
T Consensus       234 r~~a~~aL~~i----g~~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         234 YDDIIEAAGEL----GDKTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             CHHHHHHHHHH----CCGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            66677776655    355566666654433 3556666665444

PyMOL of d1oyza_

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure