Citrus Sinensis ID: 002876

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870--
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAISF
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
cHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcc
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGelvndekpveSRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKtlsspahdarsTASQVVAKVAGielphkqwPELIGALLSnihqlpphtkqaTLETLGYICEevssdaveqDHVNKILTAVVQGmnasesnnDVRLAATRALYNALGFaqanfsndmerDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAkavredeepVALQAIEFWSSVCDEEIDILEeyggdfsgdsdipcfyfikhalpVLVPLLLETLLKqeedqdqdEGAWNIAMAGGTCLGLVartvgddivplvmpfveeNITKQEWRQREAATYAFgsilegpspeklvPLVNIALNFMLTAlmqdpnnhvkdttawTLGRMFEflhgstletpiinqgNCQQIISVLLQSMKDVPNVAEKACGALYFLAQgfedaispsspltpFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVrcstdetapmVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLssnqlhrsvkppifscfGDIALAIGENFEKYLMYAMPMLQSAAELSvhtsgvdddmTEYTNSLRNGILEAFSGifqgfkgspktqllmpyapHILQFLDSLYMEKDMDDVVTKTAIGVLGDLadtlgsnagpliqqsvsskdFLNECLSSDDHMIKESAEWAKLAISKAISF
MSAEVTQIllnaqsvdgtVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKtlsspahdarSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGsilegpspEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRedagesrlrtaayeTLNEvvrcstdetAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAISF
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAlpvlvpllletllkqeedqdqdeGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAISF
**********************************LPGFLLSLAGELVND*****SRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTL***********SQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA***NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ*******EGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQT****************IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPML***********************LRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLI********FLNECL************W***********
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI***************CFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK***D*REKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLN*************AEWAKLAISKAIS*
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS***********VVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ***********EIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAISF
***EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAISF
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MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAISF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query872 2.2.26 [Sep-21-2011]
P70168876 Importin subunit beta-1 O yes no 0.972 0.968 0.396 1e-169
Q14974876 Importin subunit beta-1 O yes no 0.972 0.968 0.394 1e-168
P52296875 Importin subunit beta-1 O yes no 0.971 0.968 0.392 1e-164
O13864863 Importin subunit beta-1 O yes no 0.948 0.958 0.399 1e-163
O18388884 Importin subunit beta OS= yes no 0.974 0.961 0.371 1e-152
Q06142861 Importin subunit beta-1 O yes no 0.912 0.924 0.333 1e-109
Q8H0U4891 Transportin-1 OS=Arabidop no no 0.571 0.558 0.235 8e-26
B9FDR3891 Transportin-1 OS=Oryza sa no no 0.489 0.479 0.226 3e-19
B8ARW2890 Transportin-1 OS=Oryza sa N/A no 0.489 0.479 0.228 3e-19
Q3SYU7898 Transportin-1 OS=Bos taur no no 0.563 0.546 0.206 5e-15
>sp|P70168|IMB1_MOUSE Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2 Back     alignment and function desciption
 Score =  597 bits (1538), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 352/887 (39%), Positives = 520/887 (58%), Gaps = 39/887 (4%)

Query: 4   EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
           E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61

Query: 64  KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
           KN+L +K+   K +  QRWL++D++ + ++K+++L+TL +  +   S+ASQ VA +A  E
Sbjct: 62  KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120

Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
           +P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++Q
Sbjct: 121 IPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179

Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
           GM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239

Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
            LV I S YY+ +  Y+   +F IT +A++ D + VALQ IEFWS+VCDEE+D+  E   
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299

Query: 299 GGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358
             +     +    ++ K AL  LVP+L +TL KQ  D++ D+  WN   A G CL L++ 
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ--DENDDDDDWNPCKAAGVCLMLLST 357

Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
              DDIVP V+PF++E+I   +WR R+AA  AFGSILEGP P +L PLV  A+   L  L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMP-TLIEL 416

Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M+DP+  V+DTTAWT+GR+ E L  +      IN      ++  L++ +   P VA   C
Sbjct: 417 MKDPSVVVRDTTAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 479 GALYFLAQGF-------EDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
            A   LA+         +D   P++  L+  F+ IVQ LL  T R D  ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531

Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
           L E+V+ S  +  P V +   +IM  L Q L  E+   S+ +R + N++Q LLC  LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591

Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGQDFLKY 646
           ++K+   +      +Q +D +M   LR+F     S    E+A++A+  L    G +FLKY
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646

Query: 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706
           M  F  ++ +GL+N+ +YQVC   VG+VGDLCRAL+  ILP+CD +M  LL++L +  +H
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVH 706

Query: 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766
           RSVKP I S FGDIALAIG  F+KYL   +  LQ A++  V  S  D DM +Y N LR  
Sbjct: 707 RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DFDMVDYLNELRES 764

Query: 767 ILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGD 821
            LEA++GI QG KG      P   L+ P    IL F+D +  ++D  D V   A G++GD
Sbjct: 765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824

Query: 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
           L    G +   L++      + L E   S  +  K  A WA   + K
Sbjct: 825 LCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871
Functions in nuclear protein import, either in association with an adapter protein, like an importin-alpha subunit, which binds to nuclear localization signals (NLS) in cargo substrates, or by acting as autonomous nuclear transport receptor. Acting autonomously, serves itself as NLS receptor. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with IPO7 mediates the nuclear import of H1 histone. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev. Imports PRKCI into the nucleus.
Mus musculus (taxid: 10090)
>sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2 Back     alignment and function description
>sp|P52296|IMB1_RAT Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1 Back     alignment and function description
>sp|O13864|IMB1_SCHPO Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap95 PE=3 SV=1 Back     alignment and function description
>sp|O18388|IMB_DROME Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=2 SV=2 Back     alignment and function description
>sp|Q06142|IMB1_YEAST Importin subunit beta-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP95 PE=1 SV=1 Back     alignment and function description
>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1 Back     alignment and function description
>sp|B9FDR3|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2 Back     alignment and function description
>sp|B8ARW2|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1 Back     alignment and function description
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query872
356523655870 PREDICTED: importin subunit beta-1-like 0.997 1.0 0.899 0.0
255570599871 importin beta-1, putative [Ricinus commu 0.997 0.998 0.889 0.0
225455336871 PREDICTED: importin subunit beta-1-like 0.997 0.998 0.889 0.0
302143924950 unnamed protein product [Vitis vinifera] 0.997 0.915 0.889 0.0
356513257870 PREDICTED: importin subunit beta-1-like 0.997 1.0 0.893 0.0
224120862871 predicted protein [Populus trichocarpa] 0.997 0.998 0.880 0.0
449456395871 PREDICTED: importin subunit beta-1-like 0.998 1.0 0.865 0.0
255549603897 importin beta-1, putative [Ricinus commu 0.998 0.971 0.870 0.0
297792721870 hypothetical protein ARALYDRAFT_495420 [ 0.996 0.998 0.841 0.0
15238758870 armadillo/beta-catenin-like repeat-conta 0.996 0.998 0.839 0.0
>gi|356523655|ref|XP_003530452.1| PREDICTED: importin subunit beta-1-like [Glycine max] Back     alignment and taxonomy information
 Score = 1642 bits (4251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 784/872 (89%), Positives = 828/872 (94%), Gaps = 2/872 (0%)

Query: 1   MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
           M+ EVTQILLNAQ+VDGT+RKQAEESLKQ+QEQNLP FL SLAGEL NDEKP ESRKLAG
Sbjct: 1   MAMEVTQILLNAQAVDGTLRKQAEESLKQFQEQNLPSFLFSLAGELANDEKPAESRKLAG 60

Query: 61  LILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120
           LILKNALDAKEQHRK E VQRWLSLD ++KAQIK+F+L+TLSSP+ DARSTASQV+AKVA
Sbjct: 61  LILKNALDAKEQHRKIEFVQRWLSLDPTLKAQIKAFLLRTLSSPSLDARSTASQVIAKVA 120

Query: 121 GIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180
           GIELPHKQWPELIG+LLSN HQLP  T+QATLETLGYICEEVS D V+QDHVNKILTAVV
Sbjct: 121 GIELPHKQWPELIGSLLSNAHQLPAPTRQATLETLGYICEEVSPDVVDQDHVNKILTAVV 180

Query: 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240
           QGMN++E NNDVRLAA +ALYNALGFAQANFSNDMERDYIMR+VCE T SPE+KIR+AAF
Sbjct: 181 QGMNSTEENNDVRLAAIKALYNALGFAQANFSNDMERDYIMRIVCETTQSPELKIRRAAF 240

Query: 241 ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300
           ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSS+CDEEIDILEEYGG
Sbjct: 241 ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGG 300

Query: 301 DFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360
           DFSGDS++PCFYFIK AL  LVP+LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV
Sbjct: 301 DFSGDSEVPCFYFIKQALSFLVPMLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360

Query: 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420
           GDDIVPLVMPF+EENITK +WRQREAATYAFGSILEGPSP+KLVPLVN+ALNFMLTALM+
Sbjct: 361 GDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPSPDKLVPLVNMALNFMLTALMK 420

Query: 421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480
           DPNNHVKDTTAWTLGRMFEFLHGS L+TPII   NCQQII+VLLQSMKDVPNVAEKACGA
Sbjct: 421 DPNNHVKDTTAWTLGRMFEFLHGSALDTPIITPANCQQIITVLLQSMKDVPNVAEKACGA 480

Query: 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540
           LYFLAQG+EDA S SSPLTPFFQEIV ALLTVTHREDAGESRLRTAAYE LNEVVRCS D
Sbjct: 481 LYFLAQGYEDAGSASSPLTPFFQEIVHALLTVTHREDAGESRLRTAAYEALNEVVRCSND 540

Query: 541 ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600
           ETAPMV+QLVPLIMMELHQTLE QK+SSDER  QNE+QGLLCGCLQVIIQKLGSSE TKY
Sbjct: 541 ETAPMVVQLVPLIMMELHQTLENQKVSSDER--QNELQGLLCGCLQVIIQKLGSSEPTKY 598

Query: 601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQN 660
            FMQYADQ+MGLFLRVFA RSATAHEEAMLAIGALAYATG DF KYM EFYKY+EMGLQN
Sbjct: 599 HFMQYADQIMGLFLRVFASRSATAHEEAMLAIGALAYATGADFAKYMTEFYKYLEMGLQN 658

Query: 661 FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720
           FEDYQVCAITVGVVGD+CRALE+KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI
Sbjct: 659 FEDYQVCAITVGVVGDVCRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 718

Query: 721 ALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKG 780
           ALAIGENFEKYL+YAMPMLQSAAELS HTSG DDDMTEYTNSLRNGILEA+SGIFQGFKG
Sbjct: 719 ALAIGENFEKYLLYAMPMLQSAAELSAHTSGADDDMTEYTNSLRNGILEAYSGIFQGFKG 778

Query: 781 SPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSS 840
           SPKTQLLMPYAPH+LQFLDSLY EKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSS
Sbjct: 779 SPKTQLLMPYAPHVLQFLDSLYNEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSS 838

Query: 841 KDFLNECLSSDDHMIKESAEWAKLAISKAISF 872
           KDFL ECLSSDDH+IKESAEWAKLAIS+AISF
Sbjct: 839 KDFLKECLSSDDHLIKESAEWAKLAISRAISF 870

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570599|ref|XP_002526256.1| importin beta-1, putative [Ricinus communis] gi|223534421|gb|EEF36125.1| importin beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225455336|ref|XP_002276600.1| PREDICTED: importin subunit beta-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143924|emb|CBI23029.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513257|ref|XP_003525330.1| PREDICTED: importin subunit beta-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224120862|ref|XP_002318437.1| predicted protein [Populus trichocarpa] gi|222859110|gb|EEE96657.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456395|ref|XP_004145935.1| PREDICTED: importin subunit beta-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255549603|ref|XP_002515853.1| importin beta-1, putative [Ricinus communis] gi|223545008|gb|EEF46522.1| importin beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297792721|ref|XP_002864245.1| hypothetical protein ARALYDRAFT_495420 [Arabidopsis lyrata subsp. lyrata] gi|297310080|gb|EFH40504.1| hypothetical protein ARALYDRAFT_495420 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238758|ref|NP_200160.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|9759187|dbj|BAB09724.1| importin beta [Arabidopsis thaliana] gi|332008979|gb|AED96362.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query872
TAIR|locus:2168586870 AT5G53480 "AT5G53480" [Arabido 0.996 0.998 0.815 0.0
TAIR|locus:2830447873 AT3G08947 [Arabidopsis thalian 0.991 0.990 0.568 2.5e-262
TAIR|locus:2830442871 AT3G08943 [Arabidopsis thalian 0.994 0.995 0.567 4.1e-262
ZFIN|ZDB-GENE-030131-2579876 kpnb1 "karyopherin (importin) 0.972 0.968 0.391 8.5e-152
UNIPROTKB|E1BFV0876 KPNB1 "Uncharacterized protein 0.972 0.968 0.384 9.8e-151
UNIPROTKB|F6X637876 KPNB1 "Uncharacterized protein 0.972 0.968 0.384 9.8e-151
UNIPROTKB|F1RWJ5877 KPNB1 "Uncharacterized protein 0.972 0.966 0.384 2.6e-150
MGI|MGI:107532876 Kpnb1 "karyopherin (importin) 0.972 0.968 0.383 2.6e-150
UNIPROTKB|E2R2I0878 KPNB1 "Uncharacterized protein 0.972 0.965 0.382 1.1e-149
UNIPROTKB|Q14974876 KPNB1 "Importin subunit beta-1 0.972 0.968 0.381 2.3e-149
TAIR|locus:2168586 AT5G53480 "AT5G53480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3683 (1301.5 bits), Expect = 0., P = 0.
 Identities = 710/871 (81%), Positives = 782/871 (89%)

Query:     1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
             M+ EVTQ+L+NAQS+DGTVRK AEESLKQ+QEQNL GFLLSLAGEL NDEKPV+SRKLAG
Sbjct:     1 MAMEVTQLLINAQSIDGTVRKHAEESLKQFQEQNLAGFLLSLAGELANDEKPVDSRKLAG 60

Query:    61 LILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120
             L+LKNALDAKEQHRK+ELVQRWL+LD S K+QI++F+LKTLS+P  D RSTASQV+AKVA
Sbjct:    61 LVLKNALDAKEQHRKYELVQRWLALDMSTKSQIRAFLLKTLSAPVPDVRSTASQVIAKVA 120

Query:   121 GIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180
             GIELP KQWPELI +LLSNIHQLP H KQATLETLGY+CEEVS D VEQ+HVNKILTAVV
Sbjct:   121 GIELPQKQWPELIVSLLSNIHQLPAHVKQATLETLGYLCEEVSPDVVEQEHVNKILTAVV 180

Query:   181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240
             QGMNA+E N DVRLAATRALY ALGFAQANF+NDMERDYIMRVVCEATLSPEVKIRQAAF
Sbjct:   181 QGMNAAEGNTDVRLAATRALYMALGFAQANFNNDMERDYIMRVVCEATLSPEVKIRQAAF 240

Query:   241 ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300
             ECLV+I+STYYEKLA Y+QDIFNITAKAVRED+E VALQAIEFWSS+CDEEIDILEEYGG
Sbjct:   241 ECLVSIASTYYEKLAHYMQDIFNITAKAVREDDESVALQAIEFWSSICDEEIDILEEYGG 300

Query:   301 DFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVARTV 360
             +F+GDSD+PCFYF K A                       GAWNIAMAGGTCLGLVAR V
Sbjct:   301 EFAGDSDVPCFYFTKQALPGLVPLLLETLLKQEEDQDLDEGAWNIAMAGGTCLGLVARAV 360

Query:   361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420
             GDDIVP VMPF+EE I+K +WR+REAATYAFGSILEGPS +KL+ +VN AL FML AL  
Sbjct:   361 GDDIVPHVMPFIEEKISKPDWREREAATYAFGSILEGPSADKLMAIVNAALTFMLNALTN 420

Query:   421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480
             DP+NHVKDTTAWTLGR+FEFLHGST+ETPIINQ NCQQII+VL+QSM D PNVAEKACGA
Sbjct:   421 DPSNHVKDTTAWTLGRIFEFLHGSTIETPIINQANCQQIITVLIQSMNDAPNVAEKACGA 480

Query:   481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540
             LYFLAQG+ED I PSSPLTPFFQEI+++LL V HREDA ESRLRTAAYE LNEVVRCSTD
Sbjct:   481 LYFLAQGYED-IGPSSPLTPFFQEIIKSLLAVAHREDATESRLRTAAYEALNEVVRCSTD 539

Query:   541 ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600
             ET+ MV+QLVP+IMMELH TLE +KLS DEREKQNE+QGLLCGCLQVIIQKLGS E TK 
Sbjct:   540 ETSTMVLQLVPVIMMELHNTLEGEKLSLDEREKQNELQGLLCGCLQVIIQKLGS-EPTKS 598

Query:   601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQN 660
              FM+YADQMMGLFLRVF  RSATAHEEAMLAIGALAYA G +F KYMPEFYKY+EMGLQN
Sbjct:   599 KFMEYADQMMGLFLRVFGCRSATAHEEAMLAIGALAYAAGPNFAKYMPEFYKYLEMGLQN 658

Query:   661 FEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720
             FE+YQVCA+TVGVVGD+CRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI
Sbjct:   659 FEEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 718

Query:   721 ALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKG 780
             ALAIGE+F+KY  Y+MPMLQSAAELS H++G DD+MTEYTNSLRNGILEA+SGIFQGFK 
Sbjct:   719 ALAIGEDFDKYWRYSMPMLQSAAELSAHSAGADDEMTEYTNSLRNGILEAYSGIFQGFKN 778

Query:   781 SPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSS 840
             S KTQLL+P+APHILQFLDS+YMEKDMD+VV KTAIGVLGDLADTLGS+ G LIQQSVSS
Sbjct:   779 SAKTQLLIPFAPHILQFLDSIYMEKDMDEVVMKTAIGVLGDLADTLGSHVGGLIQQSVSS 838

Query:   841 KDFLNECLSSDDHMIKESAEWAKLAISKAIS 871
             K+FLNECLSS+DH IKE+AEWAK AI++AIS
Sbjct:   839 KEFLNECLSSEDHTIKEAAEWAKHAITRAIS 869
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
TAIR|locus:2830447 AT3G08947 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2830442 AT3G08943 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2579 kpnb1 "karyopherin (importin) beta 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFV0 KPNB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6X637 KPNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWJ5 KPNB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:107532 Kpnb1 "karyopherin (importin) beta 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2I0 KPNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q14974 KPNB1 "Importin subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q06142IMB1_YEASTNo assigned EC number0.33330.91280.9245yesno
O18388IMB_DROMENo assigned EC number0.37190.97470.9615yesno
O13864IMB1_SCHPONo assigned EC number0.39930.94830.9582yesno
Q14974IMB1_HUMANNo assigned EC number0.39450.97240.9680yesno
P52296IMB1_RATNo assigned EC number0.39230.97130.968yesno
P70168IMB1_MOUSENo assigned EC number0.39680.97240.9680yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037236001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (869 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017939001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (419 aa)
    ••  0.839

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query872
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 0.0
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 8e-13
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 2e-09
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 2e-08
COG5657947 COG5657, CSE1, CAS/CSE protein involved in chromos 9e-06
COG5656 970 COG5656, SXM1, Importin, protein involved in nucle 7e-04
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  554 bits (1429), Expect = 0.0
 Identities = 272/869 (31%), Positives = 422/869 (48%), Gaps = 31/869 (3%)

Query: 2   SAEVTQILLNAQ-SVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
            +E   +  N   S D   R +AE  L + Q  +   F+  L   L +     + R +AG
Sbjct: 3   KSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAG 62

Query: 61  LILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120
           LILKN+L A +   +    QRWL +    K Q+K   L+ L SP     + A+Q++A +A
Sbjct: 63  LILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIA 122

Query: 121 GIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAV 179
            +ELP+  WP L+  ++ N+  + P   K  +L   GY CE  + + + Q   N IL A+
Sbjct: 123 RMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS-NVILFAI 181

Query: 180 VQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAA 239
           V G   +E+ + VRLAA +AL ++L F Q NF  + ER+Y M+VVCEAT   + +++ AA
Sbjct: 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAA 241

Query: 240 FECLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY 298
           F CL  I   YY+ +  Y+++ +  +T + ++   + VA+QA+EFWS++C+EEID   E 
Sbjct: 242 FGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDG--EM 299

Query: 299 GGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358
              +  +       F + A+  ++P LL  L KQ ED   D+  WN +MA  +CL L A+
Sbjct: 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD--WNPSMAASSCLQLFAQ 357

Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
             GD I+  V+ FVE+NI  + W  REAA  AFGS++ GP  + L  +V  AL  +    
Sbjct: 358 LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN-E 416

Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M D    VK TTAW  G + + +        I   G+    +S  L  + D P  +    
Sbjct: 417 MSDSCLWVKSTTAWCFGAIADHVAMI-----ISPCGHLVLEVSASLIGLMDCPFRSINCS 471

Query: 479 GALYFLAQGFEDAISP-SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537
                L      A+    S L  F+  I+ AL+  T      ES LR + +  L  ++  
Sbjct: 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL-NESNLRVSLFSALGTLILI 530

Query: 538 STDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595
             D  + ++         +L + +    Q L+++++    E+Q    G L+ II+     
Sbjct: 531 CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD 590

Query: 596 EQTKYVFMQYADQMMGLFLRVF-AIRSATAHEEAMLAIGALAYATGQDFLKYMPEFYKYV 654
            +         DQ+M LF+R+  + +  TA  +   AI AL+ +  + F +Y  +F  Y+
Sbjct: 591 IED------VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYL 644

Query: 655 EMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIF 714
              L N  D  V    VG+VGDL   L      Y D +M+ L++ LSS   HR +KP I 
Sbjct: 645 TRAL-NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAIL 703

Query: 715 SCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGI 774
           S FGDIALAIG NFE YL   M + Q A+EL  H+  V   + +Y  +    +  A+ GI
Sbjct: 704 SVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEV--YVDDYRKNAVQLVNCAYVGI 761

Query: 775 FQGFKGSPKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLI 834
               K   +   ++PY   I   +  +  + +  +  T+ A+G++GDLA           
Sbjct: 762 GDSSKNRVR--SVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFG 819

Query: 835 QQSVSSKDFLNECLSS-DDHMIKESAEWA 862
                 KDFL   +        K+SA WA
Sbjct: 820 LDEDWVKDFLYGMMKKISSQQTKDSARWA 848

Length = 858
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 872
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 100.0
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.98
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.97
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.97
COG5656970 SXM1 Importin, protein involved in nuclear import 99.97
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.94
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.93
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.91
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.9
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.89
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.88
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.88
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.85
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.85
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.84
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.84
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.81
KOG1242569 consensus Protein containing adaptin N-terminal re 99.79
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 99.78
KOG1242569 consensus Protein containing adaptin N-terminal re 99.76
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.74
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.69
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.69
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.68
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.66
PTZ00429746 beta-adaptin; Provisional 99.62
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.6
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.58
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.58
PTZ00429746 beta-adaptin; Provisional 99.57
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 99.55
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.49
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.48
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.48
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.48
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.42
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.41
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.41
PRK09687280 putative lyase; Provisional 99.36
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.34
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.28
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.27
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.26
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.23
PRK09687280 putative lyase; Provisional 99.2
KOG2020 1041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.2
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 99.19
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.18
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.16
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.15
COG5656 970 SXM1 Importin, protein involved in nuclear import 99.09
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 99.07
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 99.05
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 99.03
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 99.02
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.99
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.98
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.96
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.9
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.89
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.87
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.86
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.85
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.84
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.84
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.82
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.78
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.78
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.71
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.69
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 98.66
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.65
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.65
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.61
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.57
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.57
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.53
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.5
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.41
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.38
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.36
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.34
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.33
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 98.28
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.27
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 98.22
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.21
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.21
PF14500262 MMS19_N: Dos2-interacting transcription regulator 98.19
COG5096757 Vesicle coat complex, various subunits [Intracellu 98.19
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.17
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.15
KOG2956516 consensus CLIP-associating protein [General functi 98.11
PF14500262 MMS19_N: Dos2-interacting transcription regulator 98.1
KOG2956516 consensus CLIP-associating protein [General functi 98.08
KOG2022 982 consensus Nuclear transport receptor LGL2 (importi 98.05
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.04
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.03
PF05804708 KAP: Kinesin-associated protein (KAP) 98.02
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.94
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.91
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 97.89
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.87
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.77
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.76
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.7
PF05004309 IFRD: Interferon-related developmental regulator ( 97.7
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.7
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.68
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.68
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.67
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.67
PF05804708 KAP: Kinesin-associated protein (KAP) 97.66
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.65
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.61
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.61
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.6
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.6
PF05004309 IFRD: Interferon-related developmental regulator ( 97.59
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.58
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.56
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.56
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.54
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.54
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.52
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 97.48
KOG18371621 consensus Uncharacterized conserved protein [Funct 97.48
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.45
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.45
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 97.43
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.43
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.39
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.38
TIGR02270410 conserved hypothetical protein. Members are found 97.34
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.34
TIGR02270410 conserved hypothetical protein. Members are found 97.34
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.32
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.3
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.28
KOG2062 929 consensus 26S proteasome regulatory complex, subun 97.28
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 97.22
KOG2025892 consensus Chromosome condensation complex Condensi 97.22
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.19
COG5218885 YCG1 Chromosome condensation complex Condensin, su 97.18
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.17
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.11
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.99
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.98
KOG0414 1251 consensus Chromosome condensation complex Condensi 96.96
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.94
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 96.91
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.9
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 96.86
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.74
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.73
KOG2549576 consensus Transcription initiation factor TFIID, s 96.69
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.68
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 96.67
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.63
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 96.6
KOG2025 892 consensus Chromosome condensation complex Condensi 96.59
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.59
KOG0413 1529 consensus Uncharacterized conserved protein relate 96.54
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.53
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.52
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.51
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.48
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 96.42
KOG15171387 consensus Guanine nucleotide binding protein MIP1 96.34
KOG18371621 consensus Uncharacterized conserved protein [Funct 96.3
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.28
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.28
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 96.22
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.22
KOG1243690 consensus Protein kinase [General function predict 96.2
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 96.2
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.07
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.07
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.0
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 96.0
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.97
KOG19491005 consensus Uncharacterized conserved protein [Funct 95.96
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 95.89
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 95.86
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 95.84
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 95.82
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 95.72
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 95.71
KOG2062929 consensus 26S proteasome regulatory complex, subun 95.69
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 95.61
KOG0567289 consensus HEAT repeat-containing protein [General 95.51
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.5
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 95.48
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.42
PF04510174 DUF577: Family of unknown function (DUF577); Inter 95.4
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 95.38
KOG2137 700 consensus Protein kinase [Signal transduction mech 95.38
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 95.28
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.21
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.21
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 95.2
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 95.06
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.03
KOG2149393 consensus Uncharacterized conserved protein [Funct 95.03
COG5116926 RPN2 26S proteasome regulatory complex component [ 95.03
KOG45241014 consensus Uncharacterized conserved protein [Funct 94.82
KOG2137700 consensus Protein kinase [Signal transduction mech 94.54
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.45
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 94.43
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 94.37
KOG45241014 consensus Uncharacterized conserved protein [Funct 94.26
KOG1048717 consensus Neural adherens junction protein Plakoph 94.15
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.13
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 94.03
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 94.02
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 93.91
KOG2549576 consensus Transcription initiation factor TFIID, s 93.81
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.64
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 93.43
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.41
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 93.33
KOG1243690 consensus Protein kinase [General function predict 93.28
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 93.22
KOG0413 1529 consensus Uncharacterized conserved protein relate 92.92
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 92.87
KOG3961262 consensus Uncharacterized conserved protein [Funct 92.59
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.55
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 92.37
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.35
KOG4199461 consensus Uncharacterized conserved protein [Funct 92.31
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 92.31
KOG2149393 consensus Uncharacterized conserved protein [Funct 92.21
KOG3961262 consensus Uncharacterized conserved protein [Funct 91.82
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 91.58
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 91.27
smart00638574 LPD_N Lipoprotein N-terminal Domain. 91.21
PF05536543 Neurochondrin: Neurochondrin 91.15
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 90.94
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 90.92
KOG0567289 consensus HEAT repeat-containing protein [General 90.68
KOG18511710 consensus Uncharacterized conserved protein [Funct 90.67
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 90.44
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 90.39
KOG1048717 consensus Neural adherens junction protein Plakoph 90.06
KOG1222791 consensus Kinesin associated protein KAP [Intracel 89.76
PF04510174 DUF577: Family of unknown function (DUF577); Inter 89.73
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 89.52
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 89.43
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 89.31
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 88.74
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 88.4
PF05536543 Neurochondrin: Neurochondrin 88.11
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 87.97
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 87.94
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 87.61
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 87.58
KOG2081559 consensus Nuclear transport regulator [Intracellul 87.53
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 87.42
cd03561133 VHS VHS domain family; The VHS domain is present i 87.36
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 87.35
PF14222552 MOR2-PAG1_N: Cell morphogenesis N-terminal 86.78
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 86.21
KOG4199461 consensus Uncharacterized conserved protein [Funct 85.98
PF14225262 MOR2-PAG1_C: Cell morphogenesis C-terminal 85.43
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 85.36
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 85.34
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 84.75
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 84.61
KOG18511710 consensus Uncharacterized conserved protein [Funct 84.48
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 84.18
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 83.71
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 83.65
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 83.33
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 82.18
PF08146153 BP28CT: BP28CT (NUC211) domain; InterPro: IPR01295 82.07
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 82.06
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 81.59
cd03561133 VHS VHS domain family; The VHS domain is present i 80.93
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 80.9
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 80.9
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 80.81
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-104  Score=800.38  Aligned_cols=852  Identities=50%  Similarity=0.814  Sum_probs=792.4

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876            3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW   82 (872)
Q Consensus         3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~   82 (872)
                      |++.++|.+++|||+++|+.|+++|.+++.+|++.|+..|.++|.+.+.+...|..|++.|||.+..+.+..+.....+|
T Consensus         1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW   80 (859)
T KOG1241|consen    1 MELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW   80 (859)
T ss_pred             CcHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCCh-hHHHHHHHHHHHhhhh
Q 002876           83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPP-HTKQATLETLGYICEE  161 (872)
Q Consensus        83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~~al~~l~~i~~~  161 (872)
                      ..++.|.|+++|+.+++.|.++.+..++.|+++++.|+..+.|++.||++++.+.....++.+ .+|++++++++++|++
T Consensus        81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~  160 (859)
T KOG1241|consen   81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED  160 (859)
T ss_pred             HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999987755 4899999999999999


Q ss_pred             ccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 002876          162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE  241 (872)
Q Consensus       162 ~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~~  241 (872)
                      .+|+.+ ..+.+.++..++++++..+++..||.+|+++|.+.+.+...+|..+.+++.|++++++.++.++.+++.+++.
T Consensus       161 i~pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~  239 (859)
T KOG1241|consen  161 IDPEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQ  239 (859)
T ss_pred             CCHHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHH
Confidence            989877 7889999999999998778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhhHhhHHH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHhhhhh
Q 002876          242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV  320 (872)
Q Consensus       242 ~l~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (872)
                      ||..|...||+++.+|+.+ ++...+..+.+++++|..+++|||+++|+.+.++..+|....+......+++|.+..++.
T Consensus       240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~  319 (859)
T KOG1241|consen  240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD  319 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH
Confidence            9999999999999999986 999999999999999999999999999999999888776332222211367899999999


Q ss_pred             HHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhCCCCC
Q 002876          321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP  400 (872)
Q Consensus       321 l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~~~~~  400 (872)
                      ++|.+++.|.++++|+|+|+  |++.++|+.||..+++..|++++|+++||+.+++.+++|+.|+++.++||++.++..+
T Consensus       320 v~P~Ll~~L~kqde~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~  397 (859)
T KOG1241|consen  320 VVPVLLELLTKQDEDDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP  397 (859)
T ss_pred             hhHHHHHHHHhCCCCccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence            99999999999887766544  9999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHHHHHH
Q 002876          401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA  480 (872)
Q Consensus       401 ~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~a  480 (872)
                      ..+.+.+++.+|.++..+ .|++-.||.++.|++|+++++++.     ...+..+++.+++.++.++.|+|+|..++||+
T Consensus       398 ~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e-----~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA  471 (859)
T KOG1241|consen  398 DKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPE-----AIINQELLQSKLSALLEGLNDEPRVASNVCWA  471 (859)
T ss_pred             hhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchh-----hcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence            889999999999999999 999999999999999999999874     45678899999999999999999999999999


Q ss_pred             HHHHHHhcccCC---CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHH
Q 002876          481 LYFLAQGFEDAI---SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL  557 (872)
Q Consensus       481 l~~l~~~~~~~~---~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l  557 (872)
                      +..|++.+.+..   ...+...|+++.|+..|++.....+..+.++|..++++|+.+++.+++...+.+..++..++..+
T Consensus       472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl  551 (859)
T KOG1241|consen  472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKL  551 (859)
T ss_pred             HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            999998764431   12345668999999999999988775578999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc-cccchhhHHHHHHHHHH
Q 002876          558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALA  636 (872)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~  636 (872)
                      .++++....+.+|+.....++..+|.+|+.+.++++++      +.++.+++|..+++++++ .+..+.+.|+.+++.++
T Consensus       552 ~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~  625 (859)
T KOG1241|consen  552 DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA  625 (859)
T ss_pred             HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence            99998778888999999999999999999999999987      899999999999999998 46668999999999999


Q ss_pred             HHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhHHHH
Q 002876          637 YATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC  716 (872)
Q Consensus       637 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~  716 (872)
                      .++|+.|.+|++.+.|+|...|++..+..|...+++++|++++.++.++.||.+.++..|++.|+++..++++|+.++++
T Consensus       626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~  705 (859)
T KOG1241|consen  626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV  705 (859)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence            99999999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHHHHH
Q 002876          717 FGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPHILQ  796 (872)
Q Consensus       717 l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~  796 (872)
                      +|+|+.++|.+|.+|++.+++.+..+-+..  ++..|.++.+|+..+|+++++++.|++.+++.......+.||++.|+.
T Consensus       706 FgDIAlaIg~~F~~Yl~~vm~llq~as~~~--~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~s  783 (859)
T KOG1241|consen  706 FGDIALAIGADFEPYLEMVMPLLQQASSVQ--TDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIIS  783 (859)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHH
Confidence            999999999999999999999999887444  334677789999999999999999999999966566788999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 002876          797 FLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISKAIS  871 (872)
Q Consensus       797 ~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  871 (872)
                      ++.++-.+++.++.+..+|+++||+++..+|+...+++..++||..+|.+.+++.+...|..|.|++.+|-|.++
T Consensus       784 fi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~~~  858 (859)
T KOG1241|consen  784 FIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKRQIS  858 (859)
T ss_pred             HHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence            999999987778999999999999999999999999999888999999999999999999999999999998764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins [] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query872
1ukl_A876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 1e-163
2p8q_A876 Crystal Structure Of Human Importin Beta Bound To T 1e-162
1qgk_A876 Structure Of Importin Beta Bound To The Ibb Domain 1e-162
2qna_A762 Crystal Structure Of Human Importin-Beta (127-876) 1e-140
2bpt_A861 Structure Of The Nup1p:kap95p Complex Length = 861 1e-103
3nd2_A861 Structure Of Yeast Importin-Beta (Kap95p) Length = 1e-103
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 3e-88
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 9e-86
1f59_A442 Importin-Beta-Fxfg Nucleoporin Complex Length = 442 1e-85
1gcj_A460 N-Terminal Fragment Of Importin-Beta Length = 460 3e-83
2h4m_A865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 3e-17
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 1e-16
2qmr_A890 Karyopherin Beta2TRANSPORTIN Length = 890 1e-15
1qbk_B890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 1e-14
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure 
Iteration: 1

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 341/887 (38%), Positives = 504/887 (56%), Gaps = 39/887 (4%)
Query: 4   EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
           E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64  KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
           KN+L +K+   K +  QRWL++D++ + ++K+++L+TL +  +   S+ASQ VA +A  E
Sbjct: 62  KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
           +P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++Q
Sbjct: 121 IPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
           GM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
            LV I S YY+ +  Y+   +F IT +A++ D + VALQ IEFWS+VCDEE+D+  E   
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
             +     +    ++ K A                         WN   A G CL L++ 
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLST 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
              DDIVP V+PF++E+I   +WR R+AA  AFGSILEGP P +L PLV  A+   L  L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M+DP+  V+DTTAWT+GR+ E L  +      IN      ++  L++ +   P VA   C
Sbjct: 417 MKDPSVVVRDTTAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQGF-------EDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
            A   LA+         +D   P++  L+  F+ IVQ LL  T R D  ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
           L E+V+ S  +  P V +   +IM  L Q L  E+   S+ +R + N++Q LLC  LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGQDFLKY 646
           ++K+   +      +Q +D +M   LR+F     S    E+A++A+  L    G +FLKY
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
Query: 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706
           M  F  ++ +GL+N+ +YQVC   VG+VGDLCRAL+  ILP+CD +M  LL++L +  +H
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVH 706
Query: 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766
           RSVKP I S FGDIALAIG  F+KYL   +  LQ A++  V  S  D DM +Y N LR  
Sbjct: 707 RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DFDMVDYLNELRES 764
Query: 767 ILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGD 821
            LEA++GI QG KG      P   L+ P    IL F+D +  ++D  D V   A G++GD
Sbjct: 765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824
Query: 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
           L    G +   L++      + L E   S  +  K  A WA   + K
Sbjct: 825 LCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861 Back     alignment and structure
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442 Back     alignment and structure
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460 Back     alignment and structure
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query872
1qgr_A876 Protein (importin beta subunit); transport recepto 0.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 0.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-126
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 1e-116
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 5e-36
2x1g_F971 Cadmus; transport protein, developmental protein, 5e-32
2x1g_F 971 Cadmus; transport protein, developmental protein, 4e-05
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-31
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 7e-08
2x19_B963 Importin-13; nuclear transport, protein transport; 9e-22
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 3e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 5e-13
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 1e-10
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 6e-09
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 2e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 7e-07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-04
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 9e-06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 7e-05
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-04
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
 Score =  658 bits (1699), Expect = 0.0
 Identities = 346/887 (39%), Positives = 512/887 (57%), Gaps = 39/887 (4%)

Query: 4   EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
           E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61

Query: 64  KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
           KN+L +K+   K +  QRWL++D++ + ++K+++L TL +  +   S + Q VA +A  E
Sbjct: 62  KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSAS-QCVAGIACAE 120

Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
           +P  QWPELI  L++N+       H K++TLE +GYIC+++  +   QD  N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE-QLQDKSNEILTAIIQ 179

Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
           GM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239

Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG- 299
            LV I S YY+ +  Y+   +F IT +A++ D + VALQ IEFWS+VCDEE+D+  E   
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299

Query: 300 -GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358
             +     +    ++ K AL  LVP+L +TL KQ+E+ D D+  WN   A G CL L+A 
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD--WNPCKAAGVCLMLLAT 357

Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
              DDIVP V+PF++E+I   +WR R+AA  AFG ILEGP P +L PLV  A+  ++  L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-L 416

Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M+DP+  V+DT AWT+GR+ E L         IN      ++  L++ +   P VA   C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLP-----EAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 479 GALYFLAQGFEDA--------ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
            A   LA+   +A           +  L+  F+ IVQ LL  T R D  ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531

Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTLEA--QKLSSDEREKQNEIQGLLCGCLQVI 588
           L E+V+ S  +  P V +   +IM  L Q L+      S+ +R + N++Q LLC  LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591

Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATAHEEAMLAIGALAYATGQDFLKY 646
           ++K+   +      +Q +D +M   LR+F     S    E+A++A+  L    G +FLKY
Sbjct: 592 LRKVQHQD-----ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646

Query: 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706
           M  F  ++ +GL+N+ +YQVC   VG+VGDLCRAL+  I+P+CD +M  LL++L +  +H
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVH 706

Query: 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766
           RSVKP I S FGDIALAIG  F+KYL   +  LQ A++  V  S  D DM +Y N LR  
Sbjct: 707 RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DYDMVDYLNELRES 764

Query: 767 ILEAFSGIFQGFKGS-----PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGD 821
            LEA++GI QG KG      P   L+ P    IL F+D +  ++D  D V   A G++GD
Sbjct: 765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824

Query: 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
           L    G +   L++      + L E   S  +  K  A WA   + K
Sbjct: 825 LCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query872
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.97
2x1g_F 971 Cadmus; transport protein, developmental protein, 99.92
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.9
2x19_B 963 Importin-13; nuclear transport, protein transport; 99.88
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.84
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.8
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.79
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.78
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.76
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.76
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.75
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.72
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.7
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.7
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.69
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.68
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.67
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.66
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.65
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.64
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.63
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.63
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.6
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.59
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.59
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.59
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.58
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.54
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.52
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.5
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.46
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.46
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.46
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.44
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.4
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.4
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.4
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.28
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.2
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.15
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.13
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.1
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.07
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.01
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.99
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.98
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.93
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.93
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.92
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.91
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.9
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.89
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.89
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.87
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.86
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.86
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.85
3nmz_A458 APC variant protein; protein-protein complex, arma 98.8
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.74
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.71
3nmz_A458 APC variant protein; protein-protein complex, arma 98.66
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.64
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.63
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.62
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.54
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.47
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.46
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.45
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.45
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.39
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.38
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.36
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.3
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.29
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.15
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.13
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.06
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 98.0
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.98
3grl_A651 General vesicular transport factor P115; vesicle t 97.98
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.97
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.96
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 97.78
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.59
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 97.58
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.97
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.95
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.78
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.76
3grl_A651 General vesicular transport factor P115; vesicle t 96.68
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.59
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 96.28
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 96.25
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 96.24
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.22
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.21
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.88
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 95.88
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.61
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.54
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 94.85
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 94.7
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 94.35
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 94.24
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 93.93
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 92.46
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 92.24
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 92.0
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 91.79
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 89.64
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 89.37
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 88.42
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 86.38
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 82.31
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 82.08
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 81.61
3g2s_A149 C-terminal fragment of sortilin-related receptor; 80.56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
Probab=100.00  E-value=5.1e-71  Score=659.09  Aligned_cols=843  Identities=32%  Similarity=0.558  Sum_probs=721.4

Q ss_pred             hHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhh
Q 002876            3 AEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR   81 (872)
Q Consensus         3 ~~l~~~l~~~-~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~   81 (872)
                      |++.++|.++ .++|+++|++|+++|++++++++|+|+..|++++.+++.+.++|++|++.|||.++++|+.........
T Consensus         4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~   83 (861)
T 2bpt_A            4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR   83 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence            5799999999 999999999999999999987889999999999988667899999999999999999999887777788


Q ss_pred             ccC-CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCC-ChhHHHHHHHHHHHhh
Q 002876           82 WLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYIC  159 (872)
Q Consensus        82 ~~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~al~~l~~i~  159 (872)
                      |.. ++++.+..+|+.+++.|.++++.+|+.++.+++.++.+++|...|+++++.+.+.+.++ ++.+|++++.+++.++
T Consensus        84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~  163 (861)
T 2bpt_A           84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC  163 (861)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            997 99999999999999999999999999999999999999988559999999999999988 8999999999999999


Q ss_pred             hhccccc--cchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHH
Q 002876          160 EEVSSDA--VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ  237 (872)
Q Consensus       160 ~~~~~~~--l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~  237 (872)
                      +.+.++.  + .++...+++.+.+.+.+.+++..||..|++++..++.++...+.....++.+++.+...+.++++++|.
T Consensus       164 ~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~  242 (861)
T 2bpt_A          164 ESADPQSQAL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA  242 (861)
T ss_dssp             HTSSTTSSTT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             HcCChhhhHH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHH
Confidence            9874432  4 578899999999999832238999999999999988777665544444567889988888899999999


Q ss_pred             HHHHHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchHhHHHh
Q 002876          238 AAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKH  316 (872)
Q Consensus       238 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (872)
                      .++++|..++..+++.+.+++. .+++.++..+.+.+++++..++++|..+++...........+  +.+...+.++..+
T Consensus       243 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~  320 (861)
T 2bpt_A          243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF--PQSPLQSYNFALS  320 (861)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCSCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCCchhhHHHHHH
Confidence            9999999999999999999999 999999999999999999999999999988653321110000  0000002245667


Q ss_pred             hhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhC
Q 002876          317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE  396 (872)
Q Consensus       317 ~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~  396 (872)
                      ++..++|.++..+.+.++|+  +++.|++|.++..+++.++..+|+.+++.+++++.+.+.+++|..|++++.+++.+++
T Consensus       321 ~~~~il~~ll~~l~~~~~d~--~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          321 SIKDVVPNLLNLLTRQNEDP--EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHHHHHTTCCCCC---CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHhccccc--ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence            78889999999887654432  3456999999999999999999988999999999999999999999999999999998


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHH
Q 002876          397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK  476 (872)
Q Consensus       397 ~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~  476 (872)
                      ++.++.+.++++.+++.+...+ .|+++.||.++++++++++...+..     .....+++.+++.+++.++++++||..
T Consensus       399 ~~~~~~~~~~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~~v~~~  472 (861)
T 2bpt_A          399 GPDKVQRTYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQDHPKVATN  472 (861)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG-----SCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHHhccChHHHHH
Confidence            8754567788899999999999 9999999999999999999987521     113578999999999999888999999


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHH
Q 002876          477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMME  556 (872)
Q Consensus       477 a~~al~~l~~~~~~~~~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~  556 (872)
                      |++++..+++.+++  ..+..+.||++.+++.++..+.+.+. ++.+|..++++++.++...+....+++..++|.+++.
T Consensus       473 a~~al~~l~~~~~~--~~~~~l~~~~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~  549 (861)
T 2bpt_A          473 CSWTIINLVEQLAE--ATPSPIYNFYPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYATDTVAETSASISTFVMDK  549 (861)
T ss_dssp             HHHHHHHHHHHHSS--SSSCGGGGGHHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Confidence            99999999998742  01366889999999999999986543 4789999999999999999998999999999999999


Q ss_pred             HHHHHh--hhcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcccc-chhhHHHHHHH
Q 002876          557 LHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA-TAHEEAMLAIG  633 (872)
Q Consensus       557 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~a~~~l~  633 (872)
                      |.....  ....++++++....++..++.++..++..++..      +.++.+.+++.+...+++.+. .+++.++.+++
T Consensus       550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~  623 (861)
T 2bpt_A          550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS  623 (861)
T ss_dssp             HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred             HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence            876521  011223343444467788999999999999875      889999999999999998876 89999999999


Q ss_pred             HHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCCCCCCCchhH
Q 002876          634 ALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPI  713 (872)
Q Consensus       634 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~  713 (872)
                      .++...|..+.+|++.++|.+...+++ +++.+|..++.+++.+++.++..+.||++.+++.++..+.+++.+.++|..+
T Consensus       624 ~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~  702 (861)
T 2bpt_A          624 ALAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAV  702 (861)
T ss_dssp             HHHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHH
Confidence            999999999999999999999999964 4568999999999999999999999999999999999998874458899999


Q ss_pred             HHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCCCcccccccchHH
Q 002876          714 FSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGSPKTQLLMPYAPH  793 (872)
Q Consensus       714 ~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  793 (872)
                      +.++|.++...|+.|.+|++.++|.+...++...+.  +|+|..++...+|.++++++.+++..++..  +..+.||++.
T Consensus       703 ~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~--~~~~~~~~~~  778 (861)
T 2bpt_A          703 LSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPEN--GTLEALDYQIKVLEAVLDAYVGIVAGLHDK--PEALFPYVGT  778 (861)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSS--SSHHHHHHHHHHHHHHHHHHHHHHHHTTTC--HHHHGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHH
Confidence            999999999999999999999999999988754322  345556777899999999999999886642  3678999999


Q ss_pred             HHHHHHHHhcCCC-C-CHHHHHHHHHHHHHHHHHh-cCCccccccCchHHHHHHHHHh--cCCChhHHHHHHHHHHHHHH
Q 002876          794 ILQFLDSLYMEKD-M-DDVVTKTAIGVLGDLADTL-GSNAGPLIQQSVSSKDFLNECL--SSDDHMIKESAEWAKLAISK  868 (872)
Q Consensus       794 i~~~l~~~l~~~~-~-~~~v~~~a~~~l~~i~~~~-g~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~~~~~~~~~~~  868 (872)
                      +++.+...+.+.+ . ++.+|..|+.+++.++..+ |+.+.++++.. +++.+++.+.  .+.+...++.|.||++++.+
T Consensus       779 i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~  857 (861)
T 2bpt_A          779 IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD-WVIDYIKRTRSGQLFSQATKDTARWAREQQKR  857 (861)
T ss_dssp             HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCH-HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcH-HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence            9999998887521 1 7899999999999999999 89999999943 8999999988  46778999999999999998


Q ss_pred             Hhc
Q 002876          869 AIS  871 (872)
Q Consensus       869 ~~~  871 (872)
                      .++
T Consensus       858 ~~~  860 (861)
T 2bpt_A          858 QLS  860 (861)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            765
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 872
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 1e-176
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-151
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 9e-86
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 7e-79
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 4e-55
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 6e-27
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 4e-09
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 9e-07
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  531 bits (1367), Expect = e-176
 Identities = 348/887 (39%), Positives = 515/887 (58%), Gaps = 39/887 (4%)

Query: 4   EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
           E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61

Query: 64  KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
           KN+L +K+   K +  QRWL++D++ + ++K+++L TL +      S+ASQ VA +A  E
Sbjct: 62  KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTE-TYRPSSASQCVAGIACAE 120

Query: 124 LPHKQWPELIGALLSNIH--QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
           +P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179

Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
           GM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239

Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG- 299
            LV I S YY+ +  Y+   +F IT +A++ D + VALQ IEFWS+VCDEE+D+  E   
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299

Query: 300 -GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358
             +     +    ++ K AL  LVP+L +TL KQ+E+ D D+  WN   A G CL L+A 
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD--WNPCKAAGVCLMLLAT 357

Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
              DDIVP V+PF++E+I   +WR R+AA  AFG ILEGP P +L PLV  A+  ++  L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-L 416

Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M+DP+  V+DT AWT+GR+ E L         IN      ++  L++ +   P VA   C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLP-----EAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 479 GALYFLAQGFEDAIS--------PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
            A   LA+   +A           +  L+  F+ IVQ LL  T R D  ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531

Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
           L E+V+ S  +  P V +   +IM  L Q L  E+   S+ +R + N++Q LLC  LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591

Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGQDFLKY 646
           ++K+   +      +Q +D +M   LR+F     S    E+A++A+  L    G +FLKY
Sbjct: 592 LRKVQHQD-----ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646

Query: 647 MPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLH 706
           M  F  ++ +GL+N+ +YQVC   VG+VGDLCRAL+  I+P+CD +M  LL++L +  +H
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVH 706

Query: 707 RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNG 766
           RSVKP I S FGDIALAIG  F+KYL   +  LQ A++  V  S  D DM +Y N LR  
Sbjct: 707 RSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKS--DYDMVDYLNELRES 764

Query: 767 ILEAFSGIFQGFKGSPKT-----QLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGD 821
            LEA++GI QG KG  +       L+ P    IL F+D +  ++D  D V   A G++GD
Sbjct: 765 CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824

Query: 822 LADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESAEWAKLAISK 868
           L    G +   L++      + L E   S  +  K  A WA   + K
Sbjct: 825 LCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query872
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.97
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.97
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.96
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.96
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.75
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.72
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.68
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.42
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.39
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.32
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.28
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.26
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.24
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.19
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.15
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.8
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.78
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.54
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.52
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.12
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.03
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.84
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.73
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.49
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 96.16
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 95.23
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 94.52
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 92.84
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 92.5
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 92.46
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.5
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 90.5
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 87.82
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-67  Score=623.16  Aligned_cols=849  Identities=41%  Similarity=0.682  Sum_probs=719.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCCChhHHHHHHHHHhcccccchhhhHHHhhhhc
Q 002876            3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW   82 (872)
Q Consensus         3 ~~l~~~l~~~~s~~~~~r~~a~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~   82 (872)
                      ||+.++|++++|+|+++|++|+++|+++.++++|+|+..|++++.+.+.+.++|++|+++|||.+.++|+.........|
T Consensus         1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~   80 (876)
T d1qgra_           1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   80 (876)
T ss_dssp             CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhccc
Confidence            78999999999999999999999999999999999999999999988889999999999999999999999888888899


Q ss_pred             cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHhhcCCC--hhHHHHHHHHHHHhhh
Q 002876           83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLP--PHTKQATLETLGYICE  160 (872)
Q Consensus        83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~l~~~l~~~l~~~~--~~~r~~al~~l~~i~~  160 (872)
                      ..++++.++.+|+.+++.+.+++. +|+.+|.+++.++..++|.+.||++++.+.+.+.+++  ...|.+++.+++.+++
T Consensus        81 ~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~  159 (876)
T d1qgra_          81 LAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  159 (876)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999998764 5677899999999999987789999999999987654  5789999999999999


Q ss_pred             hccccccchhhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhHhhchhhccChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 002876          161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF  240 (872)
Q Consensus       161 ~~~~~~l~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~r~~~~  240 (872)
                      .+.++.+ ..+.+.+++.+.+.+.+.+++..+|..+++++...+.+....+......+.+++.+...+++++++++..++
T Consensus       160 ~~~~~~~-~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~  238 (876)
T d1qgra_         160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL  238 (876)
T ss_dssp             HSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HCCHHHH-HHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            8756666 678899999999988766778899999999999998887777766666678899999999999999999999


Q ss_pred             HHHHHHHHHhHHhhHhhHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCCchHhHHHh
Q 002876          241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG---GDFSGDSDIPCFYFIKH  316 (872)
Q Consensus       241 ~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  316 (872)
                      ++|..+++.+++.+.+++. .+.+.+.....+..++++..++++|..+++.+.++.....   .... ........+...
T Consensus       239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  317 (876)
T d1qgra_         239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR-PPEHTSKFYAKG  317 (876)
T ss_dssp             HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSSCCCCHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh-hHHHHHHHHHHH
Confidence            9999999999998888875 4666677777888889999999999999987765432211   0000 000112345667


Q ss_pred             hhhhHHHHHHHHHhcccCCcccCCccchHhHHHHHHHHHHHHHcCCcchhchHHHHHhhhcCcchhhhHHHHHHHHHhhC
Q 002876          317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE  396 (872)
Q Consensus       317 ~l~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~r~aal~~l~~l~~  396 (872)
                      .++.++|.+...+...++++  +++.|++|.+|..++..++...++.+++.+++++.+.+.+++|+.|++++.+++.+.+
T Consensus       318 ~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~  395 (876)
T d1qgra_         318 ALQYLVPILTQTLTKQDEND--DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE  395 (876)
T ss_dssp             HHHHHHHHHHHHTTCCCSSC--CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHhhHHHHHhccccc--ccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhh
Confidence            77888888888777654433  3456999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhhccCCCCCCcccCccchHHHHHHHHHhccCChhHHHH
Q 002876          397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK  476 (872)
Q Consensus       397 ~~~~~~~~~~~~~i~~~l~~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~  476 (872)
                      +.....+.+++..+++.+...+ .|+++.||.+++++++++++..+.     ......++..+++.+...++++++++.+
T Consensus       396 ~~~~~~~~~~~~~~~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~  469 (876)
T d1qgra_         396 GPEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPE-----AAINDVYLAPLLQCLIEGLSAEPRVASN  469 (876)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGG-----GTSSTTTHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHHcch-----hhhhHHHhhhHHHHHHHHhcCCHHHHHH
Confidence            8766677888899999999999 999999999999999999998763     2345678999999999999989999999


Q ss_pred             HHHHHHHHHHhcccCC--------CCCCCCchhHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHccccCcHHHHHH
Q 002876          477 ACGALYFLAQGFEDAI--------SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQ  548 (872)
Q Consensus       477 a~~al~~l~~~~~~~~--------~~~~~l~~~l~~i~~~l~~~l~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~  548 (872)
                      +++++..+++......        .....+.+|++.+++.++..+...+..+..++..++.++..++...+....+++..
T Consensus       470 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  549 (876)
T d1qgra_         470 VCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK  549 (876)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            9999999987643210        22456788999999999999976654356788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh--hcCChhHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhcc--ccch
Q 002876          549 LVPLIMMELHQTLEA--QKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIR--SATA  624 (872)
Q Consensus       549 l~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~  624 (872)
                      +++.+++.+......  ...+..++.....++..++.++..++..++..     ...++.+.+++.+.+.+...  +..+
T Consensus       550 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~~i~~~l~~~l~~~~~~~~~  624 (876)
T d1qgra_         550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ-----DALQISDVVMASLLRMFQSTAGSGGV  624 (876)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH-----HHHTTHHHHHHHHHHHC-----CCHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchh-----hhhhhHHHHHHHHHHHHhcCCCCcch
Confidence            999998888776542  12233344444455666777777776655543     25567888999998888653  5568


Q ss_pred             hhHHHHHHHHHHHHhhhhhHhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHccCCC
Q 002876          625 HEEAMLAIGALAYATGQDFLKYMPEFYKYVEMGLQNFEDYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQ  704 (872)
Q Consensus       625 ~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~  704 (872)
                      ++.++.+++.++...|..+.+|++.++|.+...+++..+++++..++.+++.+++..+..+.||++++++.+++.++++.
T Consensus       625 ~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~  704 (876)
T d1qgra_         625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN  704 (876)
T ss_dssp             HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999998887788999999999999999999999999999999999999887


Q ss_pred             CCCCCchhHHHHHHHHHHHhccchHHhHHHHHHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHhhcccCC---
Q 002876          705 LHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAELSVHTSGVDDDMTEYTNSLRNGILEAFSGIFQGFKGS---  781 (872)
Q Consensus       705 ~~~~v~~~~~~~l~~i~~~~~~~~~~~l~~il~~l~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  781 (872)
                      .+..+|..++.++|+++..+|+.|.+|++.++|.+.+.++...+  .++++..++...+|+++++++.+++..++..   
T Consensus       705 ~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~  782 (876)
T d1qgra_         705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD--KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN  782 (876)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccC--ccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            77889999999999999999999999999999999998875532  3455667888999999999999998776532   


Q ss_pred             --CcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCccccccCchHHHHHHHHHhcCCChhHHHHH
Q 002876          782 --PKTQLLMPYAPHILQFLDSLYMEKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLNECLSSDDHMIKESA  859 (872)
Q Consensus       782 --~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~a~~~l~~i~~~~g~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~  859 (872)
                        .....+.||+..+++++..+..+...+++++..+++++|+++..+|++..+.+.+++++..++.+...+.+++.|..|
T Consensus       783 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a  862 (876)
T d1qgra_         783 VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLA  862 (876)
T ss_dssp             CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHH
Confidence              123357889999999888877776789999999999999999999998877776666899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 002876          860 EWAKLAISKA  869 (872)
Q Consensus       860 ~~~~~~~~~~  869 (872)
                      .|++.+|.|.
T Consensus       863 ~~~~~~~~~~  872 (876)
T d1qgra_         863 RWATKELRKL  872 (876)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999885
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure