Citrus Sinensis ID: 002898

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------87
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQI
ccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccEEEEccHHHHHHcHHHHHHHHHHccccEEEEcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccccHHHcccccccccccccccccccHHHHHHHHHHHccccccEEEccccEEEccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccEEEEccEEEEEEcccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccEEEcccccccccccccccEEcccHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccHHHHHHHHHcccccccccccccccccccccHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccEEEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHcccEEEcccccccHHHHHHHHcccHHHHHccccccccEEEEEcccEEEEccccccEEEEccccccHHHHHHHHHHHHHHccccccEEEcccccEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccEEEEccEEEEEEcccccccccccccccHHHHHHHHcccEEccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEcccccccccccccEEEccHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHcccccEEEEEccccccccEEEcccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccEEEcccHHHHHHHccHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEHHcHccccccccccccccEEEEEcHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEccccc
mrhfdvqiiggavlhdgsiaemktgeGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGliqrgmipeerrsnyrcditytnnselgfDYLRDNLAANseqlvmrwpkpfhfaIVDEVDsvlidegrnpllisgeaskdvaryPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETndlwdendpWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLypklsgmtgtaKTEEKEFLKMFQMpvievptnlpnirvdlpiqSFATARGKWEYARQEVESMFRLgrpvlvgstsvENSEYLSDLLKqqgiphnvlnarpkYAAREAETVAQAGRKYAITISTnmagrgtdiilggnPKMLAKKIIEDRLLLLLTREALNvevddktsspkvlseIKLGSSSLALLAKAALLAKYVGkaegkswtYQEAKSFFSESVEMSQSMNLKELQKLIDkqsamyplgptVALTYLSVLKDCEVHCsnegsevkrlgglhvigtSLHESRRIDNqlrgragrqgdpgstRFMVSLQDEMFQKFSFDTSWAVDLISRitndedmpieGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIifgnvdplkhprYWSLDKLLKEFIAIAGKILDdlfagisgDTLLKSIEelpelnsidinnfyfpdlpkppnlfrgirrKSSSLKRWLAICSddltkngryRATTNLLRKYLGDILIASYLNVVqesryddvYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYhniyfsqi
mrhfdvqiiggavlhdgsiaEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSvgliqrgmipeerrsnyrCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLlisgeaskdvaRYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGkaliineltgrveekrrWSEGIHQAVeakeglkiqADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAItistnmagrgtdIILGGNPKMLAKKIIEDRLLLLLTREALnvevddktsspkvlSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNegsevkrlggLHVIgtslhesrridnqlrgragrqgdpgSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAIcsddltkngryrATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINmnrlssavyhNIYFSQI
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRlllllTREALNVEVDDKTSSPKVLSEIklgssslallakaallakYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQI
***FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVD********LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFF****************KLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSL************************FMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYF***
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIED*************EVDDKTSSPKVLSEIKLGSSSLA**********************************MSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ*
MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEV********VLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQI
*RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNV*******S***LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQI
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MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query869 2.2.26 [Sep-21-2011]
D8WUA41058 Protein translocase subun yes no 0.989 0.812 0.816 0.0
B7K818935 Protein translocase subun yes no 0.798 0.742 0.486 0.0
Q2JJ09957 Protein translocase subun yes no 0.805 0.731 0.492 0.0
Q8DHU4929 Protein translocase subun yes no 0.829 0.776 0.488 0.0
Q2JW99954 Protein translocase subun yes no 0.814 0.742 0.494 0.0
Q55709932 Protein translocase subun N/A no 0.887 0.827 0.433 0.0
Q5N2Q7948 Protein translocase subun yes no 0.884 0.811 0.437 0.0
Q55357948 Protein translocase subun yes no 0.884 0.811 0.437 0.0
Q7NJJ6952 Protein translocase subun yes no 0.812 0.741 0.490 0.0
Q3MB92930 Protein translocase subun yes no 0.792 0.740 0.484 0.0
>sp|D8WUA4|SECA2_ARATH Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1 Back     alignment and function desciption
 Score = 1471 bits (3809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/860 (81%), Positives = 781/860 (90%)

Query: 1    MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
            MRHFDVQIIGG VLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 146  MRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 205

Query: 61   EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
            EWM RVHRFLGLSVGLIQRGM  EER+ NY CDITYTNNSELGFDYLRDNL +N EQLVM
Sbjct: 206  EWMGRVHRFLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVM 265

Query: 121  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
            RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEA+++ ARYPVAAKVAELLV+  HY VELK
Sbjct: 266  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANENAARYPVAAKVAELLVKDSHYKVELK 325

Query: 181  NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
             NSVELTEEGI+LAEMALET DLWDENDPWARFVMNALKAKEFY+RDVQYIVR+GKALII
Sbjct: 326  ENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDVQYIVRDGKALII 385

Query: 241  NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
            NELTGRVE+KRRWSEG+HQAVEAKEGL+IQADS+VVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 386  NELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKT 445

Query: 301  EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
            EEKEFLKMFQ+PVIEVPTNL NIR+DLPIQ+FATARGKWE+ R+EVE MF  GRPVLVG+
Sbjct: 446  EEKEFLKMFQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGT 505

Query: 361  TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
            TSVENSEYLS+LLK+ GIPHNVLNARPKYAAREA+ +AQAGRKYAITISTNMAGRGTDII
Sbjct: 506  TSVENSEYLSELLKEWGIPHNVLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDII 565

Query: 421  LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
            LGGNPKMLA++IIED +L  LT E L   +DD   S KVLS+IK+G SSLALLA+A+L+A
Sbjct: 566  LGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPSSLALLARASLMA 625

Query: 481  KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
            KYVGK+E KSWT ++AKS  +ES+E SQ+M+  ELQ LI++QS MYPLGP +AL YLSVL
Sbjct: 626  KYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVL 685

Query: 541  KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
            KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFM+SLQDEM
Sbjct: 686  KDCEAHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEM 745

Query: 601  FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
            FQKF+FDT WAV LIS+ITNDED+PIEGD IV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 746  FQKFNFDTEWAVRLISKITNDEDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVL 805

Query: 661  EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEF 720
            EVQRKHVYDLRQ +LTG NESCSQ IFQYMQAVVDEI+ GN +P KHPRYWSL KLLKEF
Sbjct: 806  EVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQKHPRYWSLAKLLKEF 865

Query: 721  IAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSL 780
            +AI+G +LD+ F+GI+ +T+L+S+E L E +SI++ +   P LPKPPN FRGIRRK+SSL
Sbjct: 866  MAISGNLLDESFSGITEETMLQSLENLHEGSSIEMEDLSLPHLPKPPNAFRGIRRKNSSL 925

Query: 781  KRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVK 840
            +RWL ICSD+LT +G YR   NLLRK+LGD LIASYLNVVQES +DD Y+KE+ERAVL+K
Sbjct: 926  RRWLDICSDNLTGSGSYRTLINLLRKFLGDYLIASYLNVVQESGFDDGYIKEIERAVLLK 985

Query: 841  TLDCFWRDHLINMNRLSSAV 860
            TLDC+WRDHL+NMN+LSSAV
Sbjct: 986  TLDCYWRDHLVNMNKLSSAV 1005
Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. May have a central role in coupling the hydrolysis of ATP to the transfer of proteins across the membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|B7K818|SECA_CYAP7 Protein translocase subunit SecA OS=Cyanothece sp. (strain PCC 7424) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q2JJ09|SECA_SYNJB Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q8DHU4|SECA_THEEB Protein translocase subunit SecA OS=Thermosynechococcus elongatus (strain BP-1) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q2JW99|SECA_SYNJA Protein translocase subunit SecA OS=Synechococcus sp. (strain JA-3-3Ab) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q55709|SECA_SYNY3 Protein translocase subunit SecA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q5N2Q7|SECA_SYNP6 Protein translocase subunit SecA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q55357|SECA_SYNE7 Protein translocase subunit SecA OS=Synechococcus elongatus (strain PCC 7942) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q7NJJ6|SECA_GLOVI Protein translocase subunit SecA OS=Gloeobacter violaceus (strain PCC 7421) GN=secA PE=3 SV=1 Back     alignment and function description
>sp|Q3MB92|SECA_ANAVT Protein translocase subunit SecA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=secA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query869
302141769 1067 unnamed protein product [Vitis vinifera] 0.989 0.805 0.865 0.0
359492369 1817 PREDICTED: uncharacterized protein LOC10 0.989 0.473 0.865 0.0
224062991 1053 predicted protein [Populus trichocarpa] 0.985 0.812 0.858 0.0
449457678 1057 PREDICTED: protein translocase subunit S 0.989 0.813 0.848 0.0
255558580 1794 F-box and wd40 domain protein, putative 0.985 0.477 0.844 0.0
356518567 1815 PREDICTED: uncharacterized protein LOC10 0.989 0.473 0.831 0.0
334182752 1058 preprotein translocase secA-like protein 0.989 0.812 0.816 0.0
334182750 1805 preprotein translocase secA-like protein 0.989 0.476 0.816 0.0
240254134 1051 preprotein translocase secA-like protein 0.981 0.811 0.812 0.0
449523083878 PREDICTED: protein translocase subunit S 0.934 0.924 0.842 0.0
>gi|302141769|emb|CBI18972.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1546 bits (4002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/860 (86%), Positives = 798/860 (92%)

Query: 1    MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
            MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA
Sbjct: 155  MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 214

Query: 61   EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
            EWM RVHRFLGLSVGLIQRGM  EERRSNY CDITYTNNSELGFDYLRDNLA  S QLVM
Sbjct: 215  EWMGRVHRFLGLSVGLIQRGMTSEERRSNYGCDITYTNNSELGFDYLRDNLAGTSGQLVM 274

Query: 121  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
            RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKD ARYPVAAK+AELL++GLHY VELK
Sbjct: 275  RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKIAELLIRGLHYNVELK 334

Query: 181  NNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
            +NSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRR+VQYIVRNGKALII
Sbjct: 335  DNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRNVQYIVRNGKALII 394

Query: 241  NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
            NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT
Sbjct: 395  NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 454

Query: 301  EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
            EEKEFLKMFQMPVIEVP NLPNIR DLPIQ+FATARGKWE  R+EVE MFR GRPVLVG+
Sbjct: 455  EEKEFLKMFQMPVIEVPPNLPNIRKDLPIQAFATARGKWENVREEVEYMFRQGRPVLVGT 514

Query: 361  TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
            TSVENSEYLSDLLK++ IPHNVLNARPKYAAREAE VAQAGRK+AITISTNMAGRGTDII
Sbjct: 515  TSVENSEYLSDLLKERKIPHNVLNARPKYAAREAEIVAQAGRKFAITISTNMAGRGTDII 574

Query: 421  LGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALLA 480
            LGGNPKMLAK++IED LL  LT+EA NVEVD + +S KVLS+IK+GS+SLALLAK AL+A
Sbjct: 575  LGGNPKMLAKEVIEDSLLSFLTQEAPNVEVDGEPTSQKVLSKIKIGSASLALLAKTALMA 634

Query: 481  KYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVL 540
            KYV K EGKSWTYQ+AKS  SESVEMSQS++ KEL+KL ++QS MYPLGPT+AL YLSVL
Sbjct: 635  KYVSKGEGKSWTYQKAKSMISESVEMSQSIDWKELEKLANEQSEMYPLGPTIALAYLSVL 694

Query: 541  KDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 600
            KDCE HC +EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM
Sbjct: 695  KDCEAHCLSEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEM 754

Query: 601  FQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVL 660
            FQKF+FDT WAV LIS+ITNDED+PIEGDAIV+QLL LQI+AEKY+FGIRKSLVEFDEVL
Sbjct: 755  FQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVL 814

Query: 661  EVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEF 720
            EVQRKHVYDLRQ ILTG  ESCSQ +FQYMQAVVDEI+FGNV+ LKHP  W+L KLLKEF
Sbjct: 815  EVQRKHVYDLRQLILTGDIESCSQHVFQYMQAVVDEIVFGNVNALKHPSKWNLGKLLKEF 874

Query: 721  IAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSL 780
            I I+G++LDD F GIS +TLLK++ +L EL+S+DINNFY P+LP PPN FRGIRRK+SSL
Sbjct: 875  IGISGRLLDDSFVGISEETLLKALAQLHELSSVDINNFYLPNLPTPPNAFRGIRRKTSSL 934

Query: 781  KRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVK 840
            KRWLAICSDD  ++GRYRAT NLLRKYLGD LIASYL+ VQES YDD Y+KE+ERAVLVK
Sbjct: 935  KRWLAICSDDSARDGRYRATANLLRKYLGDFLIASYLDAVQESGYDDAYVKEIERAVLVK 994

Query: 841  TLDCFWRDHLINMNRLSSAV 860
            TLDCFWRDHLINMNRLSSAV
Sbjct: 995  TLDCFWRDHLINMNRLSSAV 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492369|ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224062991|ref|XP_002300961.1| predicted protein [Populus trichocarpa] gi|222842687|gb|EEE80234.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457678|ref|XP_004146575.1| PREDICTED: protein translocase subunit SECA2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255558580|ref|XP_002520315.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223540534|gb|EEF42101.1| F-box and wd40 domain protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356518567|ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793437 [Glycine max] Back     alignment and taxonomy information
>gi|334182752|ref|NP_001185059.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|363805541|sp|D8WUA4.1|SECA2_ARATH RecName: Full=Protein translocase subunit SECA2, chloroplastic; Flags: Precursor gi|298108793|gb|ADI56650.1| plastid SecA2 [Arabidopsis thaliana] gi|332192013|gb|AEE30134.1| preprotein translocase secA-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182750|ref|NP_001185058.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192012|gb|AEE30133.1| preprotein translocase secA-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|240254134|ref|NP_173584.5| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192011|gb|AEE30132.1| preprotein translocase secA-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449523083|ref|XP_004168554.1| PREDICTED: protein translocase subunit SECA2, chloroplastic-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query869
TIGR_CMR|CHY_0162874 CHY_0162 "preprotein transloca 0.487 0.485 0.548 1.2e-159
UNIPROTKB|P0A5Y8949 secA1 "Protein translocase sub 0.494 0.453 0.518 1.3e-151
TIGR_CMR|DET_0434952 DET_0434 "preprotein transloca 0.390 0.356 0.478 4.5e-143
TIGR_CMR|GSU_2050897 GSU_2050 "preprotein transloca 0.489 0.473 0.503 1.5e-142
TIGR_CMR|BA_5421835 BA_5421 "preprotein translocas 0.492 0.512 0.502 3.9e-142
UNIPROTKB|Q7WWK0838 secA "Protein translocase subu 0.475 0.492 0.473 4.4e-135
TIGR_CMR|APH_1178873 APH_1178 "preprotein transloca 0.486 0.484 0.507 1.7e-133
TIGR_CMR|SPO_0057901 SPO_0057 "preprotein transloca 0.489 0.471 0.490 3.5e-133
TIGR_CMR|CJE_1020862 CJE_1020 "preprotein transloca 0.476 0.480 0.482 3.5e-133
TIGR_CMR|NSE_0232804 NSE_0232 "preprotein transloca 0.481 0.519 0.506 5e-132
TIGR_CMR|CHY_0162 CHY_0162 "preprotein translocase, SecA subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
 Score = 1193 (425.0 bits), Expect = 1.2e-159, Sum P(3) = 1.2e-159
 Identities = 236/430 (54%), Positives = 319/430 (74%)

Query:     1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
             MRHFDVQ++GG VLH+G IAEMKTGEGKTLV+TL AYLNALTG GVH+VTVNDYLA+RDA
Sbjct:    79 MRHFDVQLMGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGRGVHIVTVNDYLARRDA 138

Query:    61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
             EWM ++++FLGLSVGL+  GM   E+++ Y  DITY  N+E GFDYLRDN+A + +Q+V 
Sbjct:   139 EWMGKIYKFLGLSVGLVVHGMDYAEKKAAYLADITYGTNNEFGFDYLRDNMAIHPDQVVQ 198

Query:   121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELK 180
             R     ++AI+DEVDS+LIDE R PL+ISGEA K    Y   AK+ + LV G  YTV+ K
Sbjct:   199 R---ELYYAIIDEVDSILIDEARTPLIISGEAEKSTDLYYTFAKIVKQLVPGEDYTVDEK 255

Query:   181 NNSVELTEEGIALAEMALETNDLW-DENDPWARFVMNALKAKEFYRRDVQYIVRNGKALI 239
              ++V  TE GI   E  L   +L+ DE+      +  ALKA+   +RD  Y+V++G+ +I
Sbjct:   256 AHAVMPTEAGIHKVEKMLGIQNLYADEHMELTHHLNAALKAQALMKRDRDYVVKDGQVII 315

Query:   240 INELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAK 299
             ++E TGR+   RR+S+G+HQA+EAKEG+KI+ ++  +A IT+Q+ F++Y KL+GMTGTA+
Sbjct:   316 VDEFTGRLMFGRRYSDGLHQAIEAKEGVKIEQETQTLATITFQNYFRMYEKLAGMTGTAE 375

Query:   300 TEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVG 359
             TEE EF K++ + V+ +PT+ P IR DLP   F T + K++   +EV    + G+P+L+G
Sbjct:   376 TEENEFRKIYNLSVVVIPTHKPMIRKDLPDVIFKTEKAKFKAIVEEVARRHQTGQPILIG 435

Query:   360 STSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDI 419
             + S+E SE LS++LK++GIPH VLNA  KY  +EAE VAQAGR  A+TI+TNMAGRGTDI
Sbjct:   436 TISIEKSEMLSEMLKKRGIPHQVLNA--KYHEKEAEIVAQAGRLGAVTIATNMAGRGTDI 493

Query:   420 ILGGNPKMLA 429
             +LGGNP+ LA
Sbjct:   494 LLGGNPEFLA 503
GO:0009306 "protein secretion" evidence=ISS
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS
UNIPROTKB|P0A5Y8 secA1 "Protein translocase subunit SecA 1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0434 DET_0434 "preprotein translocase, SecA subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2050 GSU_2050 "preprotein translocase, SecA subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5421 BA_5421 "preprotein translocase, SecA subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q7WWK0 secA "Protein translocase subunit SecA" [Streptococcus parasanguinis (taxid:1318)] Back     alignment and assigned GO terms
TIGR_CMR|APH_1178 APH_1178 "preprotein translocase, SecA subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0057 SPO_0057 "preprotein translocase, SecA subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1020 CJE_1020 "preprotein translocase, SecA subunit" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0232 NSE_0232 "preprotein translocase, SecA subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q55357SECA_SYNE7No assigned EC number0.43790.88490.8111yesno
Q7UZM1SECA_PROMPNo assigned EC number0.44170.89520.8250yesno
Q5N2Q7SECA_SYNP6No assigned EC number0.43790.88490.8111yesno
A0T0G5SECA_PHATCNo assigned EC number0.39190.87340.8566yesno
Q10VW7SECA_TRIEINo assigned EC number0.43550.89180.8279yesno
D8WUA4SECA2_ARATHNo assigned EC number0.81620.98960.8128yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00020721
hypothetical protein (1053 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VI.8.1
SecY protein (430 aa)
  • ••• 0.870
gw1.XVIII.2978.1
SecY protein (478 aa)
  • ••• 0.829
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.708
eugene3.00140246
hypothetical protein (365 aa)
      • 0.693
eugene3.32010002
annotation not avaliable (118 aa)
    • • 0.679
gw1.2290.1.1
Predicted protein (425 aa)
      • 0.639
grail3.3183000301
Predicted protein (109 aa)
      • 0.620
fgenesh4_pg.C_scaffold_15407000001
Predicted protein (325 aa)
      • 0.615
eugene3.135990001
Predicted protein (278 aa)
      • 0.608
gw1.X.6706.1
hypothetical protein (254 aa)
      • 0.600

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query869
PRK12902939 PRK12902, secA, preprotein translocase subunit Sec 0.0
CHL00122870 CHL00122, secA, preprotein translocase subunit Sec 0.0
PRK12904830 PRK12904, PRK12904, preprotein translocase subunit 0.0
TIGR00963745 TIGR00963, secA, preprotein translocase, SecA subu 0.0
COG0653822 COG0653, SecA, Preprotein translocase subunit SecA 0.0
PRK12906796 PRK12906, secA, preprotein translocase subunit Sec 0.0
smart00957380 smart00957, SecA_DEAD, SecA DEAD-like domain 0.0
PRK09200790 PRK09200, PRK09200, preprotein translocase subunit 0.0
PRK12903925 PRK12903, secA, preprotein translocase subunit Sec 1e-174
PRK12898656 PRK12898, secA, preprotein translocase subunit Sec 1e-172
pfam07517381 pfam07517, SecA_DEAD, SecA DEAD-like domain 1e-171
TIGR03714762 TIGR03714, secA2, accessory Sec system translocase 1e-147
PRK13103913 PRK13103, secA, preprotein translocase subunit Sec 1e-141
PRK12326764 PRK12326, PRK12326, preprotein translocase subunit 1e-134
PRK13107908 PRK13107, PRK13107, preprotein translocase subunit 1e-132
PRK13104896 PRK13104, secA, preprotein translocase subunit Sec 1e-127
TIGR04221762 TIGR04221, SecA2_Mycobac, accessory Sec system tra 1e-121
PRK129011112 PRK12901, secA, preprotein translocase subunit Sec 6e-74
PRK129001025 PRK12900, secA, preprotein translocase subunit Sec 2e-67
PRK129011112 PRK12901, secA, preprotein translocase subunit Sec 8e-65
PRK129001025 PRK12900, secA, preprotein translocase subunit Sec 3e-63
PRK12899970 PRK12899, secA, preprotein translocase subunit Sec 3e-61
PRK12899970 PRK12899, secA, preprotein translocase subunit Sec 4e-53
TIGR00963745 TIGR00963, secA, preprotein translocase, SecA subu 2e-46
PRK12904830 PRK12904, PRK12904, preprotein translocase subunit 8e-46
pfam01043113 pfam01043, SecA_PP_bind, SecA preprotein cross-lin 1e-43
smart00958114 smart00958, SecA_PP_bind, SecA preprotein cross-li 8e-40
PRK12906796 PRK12906, secA, preprotein translocase subunit Sec 2e-38
COG0653822 COG0653, SecA, Preprotein translocase subunit SecA 2e-34
PRK09200790 PRK09200, PRK09200, preprotein translocase subunit 5e-32
PRK12903 925 PRK12903, secA, preprotein translocase subunit Sec 4e-30
PRK13103 913 PRK13103, secA, preprotein translocase subunit Sec 2e-27
PRK12901 1112 PRK12901, secA, preprotein translocase subunit Sec 5e-26
PRK13107 908 PRK13107, PRK13107, preprotein translocase subunit 9e-26
PRK129001025 PRK12900, secA, preprotein translocase subunit Sec 8e-25
PRK13104896 PRK13104, secA, preprotein translocase subunit Sec 2e-23
pfam07516213 pfam07516, SecA_SW, SecA Wing and Scaffold domain 7e-23
TIGR03714762 TIGR03714, secA2, accessory Sec system translocase 3e-22
PRK12898656 PRK12898, secA, preprotein translocase subunit Sec 6e-22
PRK12899970 PRK12899, secA, preprotein translocase subunit Sec 2e-21
PRK12326764 PRK12326, PRK12326, preprotein translocase subunit 6e-21
TIGR04221762 TIGR04221, SecA2_Mycobac, accessory Sec system tra 3e-17
>gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information 
 Score =  832 bits (2151), Expect = 0.0
 Identities = 375/761 (49%), Positives = 481/761 (63%), Gaps = 57/761 (7%)

Query: 1   MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
           MRHFDVQ+IGG VLH+G IAEMKTGEGKTLV+TL +YLNALTG+GVHVVTVNDYLA+RDA
Sbjct: 84  MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDA 143

Query: 61  EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
           EWM +VHRFLGLSVGLIQ+ M PEER+ NY CDITY  NSELGFDYLRDN+A +  ++V 
Sbjct: 144 EWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQ 203

Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------H 174
           R   PF++ ++DEVDS+LIDE R PL+ISG+  +   +Y  AA+VA  L +         
Sbjct: 204 R---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGD 260

Query: 175 YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN 234
           Y V+ K  +V LT+EG A AE  L  +DL+D  DPWA ++ NALKAKE + +DV YIVRN
Sbjct: 261 YEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN 320

Query: 235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGM 294
           G+ +I++E TGRV   RRWS+G+HQA+EAKEG++IQ ++  +A ITYQ+ F LYPKL+GM
Sbjct: 321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGM 380

Query: 295 TGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGR 354
           TGTAKTEE EF K +++ V  +PTN P  R D P Q + T   KW     E   M + GR
Sbjct: 381 TGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGR 440

Query: 355 PVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAG 414
           PVLVG+TSVE SE LS LL++QGIPHN+LNA+P+   REAE VAQAGRK A+TI+TNMAG
Sbjct: 441 PVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNMAG 500

Query: 415 RGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA 474
           RGTDIILGGN   +A+  + + L+  L +     E D K   P                 
Sbjct: 501 RGTDIILGGNSDYMARLKLREYLMPRLVKP----EDDHKPPVPLQRGLKGGQGFGPK--- 553

Query: 475 KAALLAKYVGKAEGKSWTY-----------QEAKSFFSESVEM------SQSMNLKELQK 517
                     K   K+W             +E +    E+V+        +S+   EL+ 
Sbjct: 554 ---------AKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELED 604

Query: 518 LIDKQSAMYPLGPTVAL----TYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRI 573
            I   +   P    V       Y  + K+ EV  S E  EV   GGLHVIGT  HESRR+
Sbjct: 605 KIATAAEKAPTDDPVIQKLREAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRV 664

Query: 574 DNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVR 633
           DNQLRGRAGRQGDPGSTRF +SL+D + + F  D      L++    +EDMPIE   + R
Sbjct: 665 DNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDR--VAGLMNAFRVEEDMPIESGMLTR 722

Query: 634 QLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV 693
            L G Q   E YY+ IRK + E+DEV+  QR+ +Y  R+ +L G      +Q+  Y +  
Sbjct: 723 SLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT 780

Query: 694 VDEIIFGNVDPLKHPRYWSLDKLL---KEFIAIAGKILDDL 731
           +DEI+   V+P   P  W LD+L+   KEF+     +L+DL
Sbjct: 781 MDEIVEAYVNPDLPPEEWDLDQLVSKVKEFVY----LLEDL 817

Length = 939
>gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated Back     alignment and domain information
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit Back     alignment and domain information
>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|214937 smart00957, SecA_DEAD, SecA DEAD-like domain Back     alignment and domain information
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|219445 pfam07517, SecA_DEAD, SecA DEAD-like domain Back     alignment and domain information
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 Back     alignment and domain information
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type Back     alignment and domain information
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit Back     alignment and domain information
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|144583 pfam01043, SecA_PP_bind, SecA preprotein cross-linking domain Back     alignment and domain information
>gnl|CDD|214938 smart00958, SecA_PP_bind, SecA preprotein cross-linking domain Back     alignment and domain information
>gnl|CDD|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain Back     alignment and domain information
>gnl|CDD|163426 TIGR03714, secA2, accessory Sec system translocase SecA2 Back     alignment and domain information
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>gnl|CDD|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 869
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 100.0
CHL00122870 secA preprotein translocase subunit SecA; Validate 100.0
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK13107 908 preprotein translocase subunit SecA; Reviewed 100.0
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK12904830 preprotein translocase subunit SecA; Reviewed 100.0
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK12326764 preprotein translocase subunit SecA; Reviewed 100.0
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 100.0
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 100.0
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 100.0
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 100.0
PRK09200790 preprotein translocase subunit SecA; Reviewed 100.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 100.0
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 100.0
PF07516214 SecA_SW: SecA Wing and Scaffold domain; InterPro: 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.97
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.97
PF01043113 SecA_PP_bind: SecA preprotein cross-linking domain 99.96
PTZ00110545 helicase; Provisional 99.96
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.96
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.96
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.95
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.95
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.95
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.95
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.95
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.95
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.94
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.93
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.93
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.93
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.92
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.92
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.92
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.92
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.92
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.91
PTZ00424401 helicase 45; Provisional 99.91
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.91
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.91
KOG0347731 consensus RNA helicase [RNA processing and modific 99.91
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.9
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.9
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.89
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.89
KOG0334997 consensus RNA helicase [RNA processing and modific 99.89
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.88
PRK13767876 ATP-dependent helicase; Provisional 99.88
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.88
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.87
PRK106891147 transcription-repair coupling factor; Provisional 99.86
PRK02362737 ski2-like helicase; Provisional 99.84
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.83
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.83
PRK00254720 ski2-like helicase; Provisional 99.83
PHA02558501 uvsW UvsW helicase; Provisional 99.83
PRK01172674 ski2-like helicase; Provisional 99.83
PRK14701 1638 reverse gyrase; Provisional 99.82
KOG4284 980 consensus DEAD box protein [Transcription] 99.8
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.79
PRK09401 1176 reverse gyrase; Reviewed 99.78
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.77
KOG0346569 consensus RNA helicase [RNA processing and modific 99.77
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.76
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.75
PRK13766773 Hef nuclease; Provisional 99.75
PHA02653675 RNA helicase NPH-II; Provisional 99.75
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.75
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.75
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.74
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 99.73
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.72
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.72
KOG0327397 consensus Translation initiation factor 4F, helica 99.72
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.69
COG1201814 Lhr Lhr-like helicases [General function predictio 99.67
PRK09694878 helicase Cas3; Provisional 99.63
COG1202830 Superfamily II helicase, archaea-specific [General 99.63
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.59
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.57
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.57
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.56
COG1205851 Distinct helicase family with a unique C-terminal 99.55
PRK04914956 ATP-dependent helicase HepA; Validated 99.54
PRK05580679 primosome assembly protein PriA; Validated 99.54
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.54
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.5
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.47
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.46
COG1204766 Superfamily II helicase [General function predicti 99.41
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.35
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.32
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.29
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.29
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.24
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.2
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.18
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.11
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.1
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.05
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.05
PRK05298652 excinuclease ABC subunit B; Provisional 99.02
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 98.94
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 98.89
smart00487201 DEXDc DEAD-like helicases superfamily. 98.83
COG4098441 comFA Superfamily II DNA/RNA helicase required for 98.81
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.8
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.78
KOG0353695 consensus ATP-dependent DNA helicase [General func 98.75
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.73
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.7
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 98.58
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.53
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 98.41
PF04851184 ResIII: Type III restriction enzyme, res subunit; 98.33
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 98.19
COG11971139 Mfd Transcription-repair coupling factor (superfam 98.19
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.18
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 98.16
KOG0354746 consensus DEAD-box like helicase [General function 98.16
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 98.07
smart0049082 HELICc helicase superfamily c-terminal domain. 97.98
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 97.95
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 97.86
COG4096875 HsdR Type I site-specific restriction-modification 97.83
COG45811041 Superfamily II RNA helicase [DNA replication, reco 97.67
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 97.53
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 97.43
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 97.3
KOG0387923 consensus Transcription-coupled repair protein CSB 97.28
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 97.16
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.14
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.14
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 96.95
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 96.14
KOG1123776 consensus RNA polymerase II transcription initiati 96.09
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 96.03
PRK14873665 primosome assembly protein PriA; Provisional 96.02
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 95.44
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 95.26
PRK11773721 uvrD DNA-dependent helicase II; Provisional 95.2
COG1198730 PriA Primosomal protein N' (replication factor Y) 94.98
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 94.67
COG0556663 UvrB Helicase subunit of the DNA excision repair c 94.59
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 94.58
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 94.2
PF02399824 Herpes_ori_bp: Origin of replication binding prote 94.16
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 93.84
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 92.96
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 92.51
PRK15483986 type III restriction-modification system StyLTI en 92.47
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 92.41
PRK10536262 hypothetical protein; Provisional 92.35
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 92.35
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 92.06
COG0610962 Type I site-specific restriction-modification syst 90.69
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 90.37
TIGR00376637 DNA helicase, putative. The gene product may repre 90.23
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 89.2
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 89.09
PF1324576 AAA_19: Part of AAA domain 88.59
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 88.38
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 88.15
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 87.93
KOG18051100 consensus DNA replication helicase [Replication, r 87.92
COG0556663 UvrB Helicase subunit of the DNA excision repair c 87.88
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 87.73
KOG1803649 consensus DNA helicase [Replication, recombination 87.52
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 87.19
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 87.18
TIGR00064272 ftsY signal recognition particle-docking protein F 87.01
COG3587985 Restriction endonuclease [Defense mechanisms] 85.74
PRK00771437 signal recognition particle protein Srp54; Provisi 85.08
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 84.93
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 84.7
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 84.53
PRK10875615 recD exonuclease V subunit alpha; Provisional 84.42
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 84.4
PRK04296190 thymidine kinase; Provisional 83.84
PRK10867433 signal recognition particle protein; Provisional 83.62
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 83.45
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 83.21
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 83.09
PRK14974336 cell division protein FtsY; Provisional 82.91
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 82.53
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 82.22
cd01124187 KaiC KaiC is a circadian clock protein primarily f 81.9
COG4889 1518 Predicted helicase [General function prediction on 81.34
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 81.03
COG2109198 BtuR ATP:corrinoid adenosyltransferase [Coenzyme m 80.78
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 80.53
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=4.1e-214  Score=1859.12  Aligned_cols=784  Identities=49%  Similarity=0.774  Sum_probs=692.0

Q ss_pred             CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898            1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG   80 (869)
Q Consensus         1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~   80 (869)
                      |||||||++||++||+|+||||+|||||||+++||+|++||+|++|||||+|||||+||++||+|||++||||||++.++
T Consensus        84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~  163 (939)
T PRK12902         84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQD  163 (939)
T ss_pred             CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898           81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP  160 (869)
Q Consensus        81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~  160 (869)
                      +++++|+.+|.||||||||++||||||||||+.+.++.++|   +++|||||||||||||||||||||||+...+..+|.
T Consensus       164 ~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR---~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~  240 (939)
T PRK12902        164 MSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQR---PFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ  240 (939)
T ss_pred             CChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccC---ccceEEEecccceeeccCCCcccccCCCccchHHHH
Confidence            99999999999999999999999999999999988889998   999999999999999999999999999998888999


Q ss_pred             HHHHHHHHccc------CCCeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhccCcceEEEC
Q 002898          161 VAAKVAELLVQ------GLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRN  234 (869)
Q Consensus       161 ~~~~~~~~l~~------~~~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d  234 (869)
                      .++.+++.|.+      +.||.+|++.++++||++|+.++|.++++.+||++.++|.++|.+||+|+++|++|+||||+|
T Consensus       241 ~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~d  320 (939)
T PRK12902        241 KAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRN  320 (939)
T ss_pred             HHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence            99999999987      779999999999999999999999999999999988899999999999999999999999999


Q ss_pred             CeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHHHhCCCeE
Q 002898          235 GKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVI  314 (869)
Q Consensus       235 ~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~iY~l~vv  314 (869)
                      |+|+|||++|||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||++++.||+++||++|+
T Consensus       321 g~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv  400 (939)
T PRK12902        321 GEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVT  400 (939)
T ss_pred             CEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHH
Q 002898          315 EVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREA  394 (869)
Q Consensus       315 ~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea  394 (869)
                      +||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.||+.||.||++|++.||||+||||++.++++||
T Consensus       401 ~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA  480 (939)
T PRK12902        401 VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREA  480 (939)
T ss_pred             EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999766889999


Q ss_pred             HHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHH
Q 002898          395 ETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLA  474 (869)
Q Consensus       395 ~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (869)
                      +||++||++|+||||||||||||||+|||||+++++..++..+.+......+....      +........++.++++. 
T Consensus       481 ~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-  553 (939)
T PRK12902        481 EIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKP------PVPLQRGLKGGQGFGPK-  553 (939)
T ss_pred             HHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhcccccccccccccc------ccccccccccccccccc-
Confidence            99999999999999999999999999999999999887654433322221111000      00000111244444433 


Q ss_pred             HHHHHHhhhccccCCchhhhhhhhh---hhhhhhhhhhhhHHHHHHH------------------HhhhccCCCCChhhH
Q 002898          475 KAALLAKYVGKAEGKSWTYQEAKSF---FSESVEMSQSMNLKELQKL------------------IDKQSAMYPLGPTVA  533 (869)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~  533 (869)
                               .+++.+.|+.+.|.-+   +++.+..+.....-.+++.                  .+......+....++
T Consensus       554 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (939)
T PRK12902        554 ---------AKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLR  624 (939)
T ss_pred             ---------cccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHH
Confidence                     5677899998877521   1111111111111111100                  011112344456789


Q ss_pred             HHHhhhhhhccccccccchhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHH
Q 002898          534 LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVD  613 (869)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~  613 (869)
                      .+|..++.+++..|.+++++|+++|||||||||||||||||||||||||||||||+|||||||||||||+||  ++++.+
T Consensus       625 ~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg--~dri~~  702 (939)
T PRK12902        625 EAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFG--GDRVAG  702 (939)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhC--cHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHhhcCCCCCCcccchhHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 002898          614 LISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAV  693 (869)
Q Consensus       614 ~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~  693 (869)
                      +|+++++++++||+|++++++|++||++||++||++||++++||+|||.||++||++|++||++  +++.+.+.+|++++
T Consensus       703 ~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~--~~~~~~i~~~~~~~  780 (939)
T PRK12902        703 LMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG--RDLKEQVIGYGEKT  780 (939)
T ss_pred             HHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999954  58999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcccHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCcccccc
Q 002898          694 VDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGI  773 (869)
Q Consensus       694 i~~iv~~~~~~~~~~~~wdl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (869)
                      |+.+++.+..+...+++|++++|...+....  ...   ..+++                              ..    
T Consensus       781 i~~~v~~~~~~~~~~~~w~~~~l~~~l~~~~--~~~---~~~~~------------------------------~~----  821 (939)
T PRK12902        781 MDEIVEAYVNPDLPPEEWDLDQLVSKVKEFV--YLL---EDLKP------------------------------ED----  821 (939)
T ss_pred             HHHHHHHhcCCccChhhccHHHHHHHHHHHh--cCh---hhcCh------------------------------Hh----
Confidence            9999999987665678899999988776421  000   00000                              00    


Q ss_pred             ccccchhhhhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002898          774 RRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQES-RYDDVYMKEVERAVLVKTLDCFWRDHLIN  852 (869)
Q Consensus       774 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~-~~~~e~~~~~ER~vlL~~ID~~W~eHLd~  852 (869)
                                            ...++.++++++|.+.+...|..|.... ..+++.++++||.++|++||.+|++||++
T Consensus       822 ----------------------~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~iD~~W~eHL~~  879 (939)
T PRK12902        822 ----------------------LEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQIDTLWREHLQS  879 (939)
T ss_pred             ----------------------hccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  0123457789999999999998774332 12677999999999999999999999999


Q ss_pred             HHHHHhhhhhhhcccc
Q 002898          853 MNRLSSAVYHNIYFSQ  868 (869)
Q Consensus       853 Md~LRegIgLR~Y~q~  868 (869)
                      |++||++|+||+||||
T Consensus       880 md~Lre~I~lR~ygQk  895 (939)
T PRK12902        880 MDALRESVGLRGYGQK  895 (939)
T ss_pred             HHHHHHhhhhhhhccC
Confidence            9999999999999997

>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query869
1nkt_A922 Crystal Structure Of The Seca Protein Translocation 1e-125
1nkt_A922 Crystal Structure Of The Seca Protein Translocation 5e-30
3dl8_A779 Structure Of The Complex Of Aquifex Aeolicus Secyeg 1e-124
3dl8_A779 Structure Of The Complex Of Aquifex Aeolicus Secyeg 2e-25
1m6n_A802 Crystal Structure Of The Seca Translocation Atpase 1e-124
1m6n_A802 Crystal Structure Of The Seca Translocation Atpase 2e-25
2ibm_A780 A Novel Dimer Interface And Conformational Changes 1e-124
2ibm_A780 A Novel Dimer Interface And Conformational Changes 2e-25
3jv2_A783 Crystal Structure Of B. Subtilis Seca With Bound Pe 1e-124
3jv2_A783 Crystal Structure Of B. Subtilis Seca With Bound Pe 2e-25
1tf2_A844 Crystal Structure Of Seca:adp In An Open Conformati 1e-124
1tf2_A844 Crystal Structure Of Seca:adp In An Open Conformati 1e-25
3iqm_A802 Active Site Mutants Of B. Subtilis Seca Length = 80 1e-124
3iqm_A802 Active Site Mutants Of B. Subtilis Seca Length = 80 2e-25
3iqy_A841 Active Site Mutants Of B. Subtilis Seca Length = 84 1e-123
3iqy_A841 Active Site Mutants Of B. Subtilis Seca Length = 84 1e-25
2ipc_A997 Crystal Structure Of The Translocation Atpase Seca 1e-118
2ipc_A997 Crystal Structure Of The Translocation Atpase Seca 1e-33
3din_A871 Crystal Structure Of The Protein-Translocation Comp 1e-114
3din_A871 Crystal Structure Of The Protein-Translocation Comp 2e-25
3jux_A822 Structure Of The Translocation Atpase Seca From The 1e-114
3jux_A822 Structure Of The Translocation Atpase Seca From The 2e-25
2fsf_A853 Escherichia Coli Seca, The Preprotein Translocase D 1e-114
2fsf_A853 Escherichia Coli Seca, The Preprotein Translocase D 3e-21
2vda_A828 Solution Structure Of The Seca-Signal Peptide Compl 1e-114
2vda_A828 Solution Structure Of The Seca-Signal Peptide Compl 4e-21
2fsg_A853 Complex Seca:atp From Escherichia Coli Length = 853 1e-110
2fsg_A853 Complex Seca:atp From Escherichia Coli Length = 853 6e-20
3bxz_A471 Crystal Structure Of The Isolated Dead Motor Domain 5e-49
3bxz_A471 Crystal Structure Of The Isolated Dead Motor Domain 8e-36
3bxz_A471 Crystal Structure Of The Isolated Dead Motor Domain 1e-14
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 Back     alignment and structure 
Iteration: 1

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/436 (51%), Positives = 305/436 (69%), Gaps = 6/436 (1%)
Query: 2   RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61
           R FDVQ++G A LH G++AEMKTGEGKTL   L AYLNAL G GVH+VTVNDYLA+RD+E
Sbjct: 111 RPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSE 170
Query: 62  WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR 121
           WM RVHRFLGL VG+I   M P+ERR  Y  DITY  N+E GFDYLRDN+A + + LV R
Sbjct: 171 WMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR 230
Query: 122 WPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKN 181
                H+AIVDEVDS+LIDE R PL+ISG A      Y   A++A L+ + +HY V+L+ 
Sbjct: 231 G---HHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRK 287
Query: 182 NSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
            +V + E+G+   E  L  ++L++  N P   ++ NALKAKE + RD  YIVR+G+ LI+
Sbjct: 288 RTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIV 347
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
           +E TGRV   RR++EG+HQA+EAKE ++I+A++  +A IT Q+ F+LY KL+GMTGTA+T
Sbjct: 348 DEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQT 407
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
           E  E  +++++ V+ +PTN+P IR D     + T   K+     +V   +  G+PVL+G+
Sbjct: 408 EAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGT 467
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
           TSVE SEYLS    ++ IPHNVLNA  KY  +EA  +A AGR+  +T++TNMAGRGTDI+
Sbjct: 468 TSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAVAGRRGGVTVATNMAGRGTDIV 525
Query: 421 LGGNPKMLAKKIIEDR 436
           LGGN   L  + + +R
Sbjct: 526 LGGNVDFLTDQRLRER 541
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase From Mycobacterium Tuberculosis Complex With Adpbs Length = 922 Back     alignment and structure
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 Back     alignment and structure
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 779 Back     alignment and structure
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 Back     alignment and structure
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From Bacillus Subtilis Length = 802 Back     alignment and structure
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 Back     alignment and structure
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes Revealed By An X- Ray Structure Of B. Subtilis Seca Length = 780 Back     alignment and structure
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 Back     alignment and structure
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide Length = 783 Back     alignment and structure
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 Back     alignment and structure
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From Bacillus Subtilis Length = 844 Back     alignment and structure
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 Back     alignment and structure
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 802 Back     alignment and structure
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 Back     alignment and structure
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca Length = 841 Back     alignment and structure
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 Back     alignment and structure
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From Thermus Thermophilus Reveals A Parallel, Head-To-Head Dimer Length = 997 Back     alignment and structure
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 Back     alignment and structure
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 871 Back     alignment and structure
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 Back     alignment and structure
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga Maritima Length = 822 Back     alignment and structure
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 Back     alignment and structure
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853 Back     alignment and structure
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 Back     alignment and structure
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex Length = 828 Back     alignment and structure
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 Back     alignment and structure
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli Length = 853 Back     alignment and structure
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 Back     alignment and structure
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 Back     alignment and structure
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From Escherichia Coli Seca Length = 471 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query869
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 0.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 0.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 5e-57
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 0.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 7e-51
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 0.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 2e-47
3jux_A822 Protein translocase subunit SECA; protein transloc 0.0
3jux_A822 Protein translocase subunit SECA; protein transloc 2e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Length = 997 Back     alignment and structure
 Score =  859 bits (2220), Expect = 0.0
 Identities = 323/884 (36%), Positives = 463/884 (52%), Gaps = 89/884 (10%)

Query: 1   MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
           MRHFDVQ+IGGAVLH+G IAEMKTGEGKTLV+TLA  LNALTG+GVHVVTVNDYLA+RDA
Sbjct: 78  MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDA 137

Query: 61  EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
           EWM  V+R LGLSVG+IQ    P ERR  Y  D+TY  NSELGFDYLRDN+A + +QLV+
Sbjct: 138 EWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197

Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------- 173
           R   P H+AI+DEVDS+LIDE R PL+ISG A K    Y   A++A+ L +GL       
Sbjct: 198 RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVR 257

Query: 174 -----HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRD 227
                 YTVE KN SV LT +GIA AE  L    L+  EN   A  ++ A++AKE Y RD
Sbjct: 258 KEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317

Query: 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKL 287
             YIV++G+ +I++E TGR+   RR+ EG+HQA+EAKEG++I+ ++  +A ITYQ+ F+L
Sbjct: 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRL 377

Query: 288 YPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVE 347
           Y K +GMTGTAKTEEKEF +++ M V+ VPTN P IR D P   + T +GK+    +E+ 
Sbjct: 378 YEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIA 437

Query: 348 SMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARP--------KYAAREAETVAQ 399
             +  G+PVLVG+ S+E SE LS +LK+  +    L  R         K    E E + +
Sbjct: 438 EKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRK 497

Query: 400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKV 459
              + A     ++A     I   GN +   + +      L + R+ +  +V +     + 
Sbjct: 498 LLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE 557

Query: 460 LSEIKLGSSSLALLAKAALLAKYVGKAEGKSWTYQEAKSFF---SESVEMSQSMNLKELQ 516
              +     S  +     +  +      G +  Y  A        +  E    + +K++ 
Sbjct: 558 AEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMV 617

Query: 517 KLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQ 576
              ++++        +    L  +++    C  +   V+ LGGL +IGT  HESRRIDNQ
Sbjct: 618 AGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQ 677

Query: 577 LRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLL 636
           LRGRAGRQGDPG +RF VS  D++ + F+ D    + ++ R+  D+  PIE   + R + 
Sbjct: 678 LRGRAGRQGDPGGSRFYVSFDDDLMRLFASD--RVIAMLDRMGFDDSEPIEHPMVTRSIE 735

Query: 637 GLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDE 696
             Q   E   F IRK L++FD+VL  QR+ +Y  R+ IL G +E   +     ++  V  
Sbjct: 736 RAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVAS 795

Query: 697 IIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDIN 756
           +    ++P  HP  W L               + L A +             EL ++   
Sbjct: 796 LAENFLNPEVHPEDWDL---------------EGLKATLLDTAPQLQDFPFAELRALKAE 840

Query: 757 NFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRYRATTNLLRKYLGDILIASY 816
                                                            + L +  + +Y
Sbjct: 841 E----------------------------------------------AVERLVEAALKAY 854

Query: 817 LNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAV 860
               +E+      M+ VER V++  +D  W++HL N++ L   +
Sbjct: 855 EA--REAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGI 896
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Length = 922 Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844 Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Length = 853 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Length = 822 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query869
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 100.0
3jux_A822 Protein translocase subunit SECA; protein transloc 100.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 100.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 100.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.96
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.95
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.95
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.95
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.94
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.94
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.94
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.94
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.94
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.93
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.93
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.93
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.93
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.93
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.92
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.91
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.9
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 99.9
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.9
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.89
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.89
4gl2_A699 Interferon-induced helicase C domain-containing P; 99.87
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.87
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.87
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.86
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.86
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.85
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.85
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 99.84
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.84
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 99.84
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.84
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.83
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.83
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.82
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.81
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.81
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.8
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.76
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.75
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.72
3h1t_A590 Type I site-specific restriction-modification syst 99.71
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.71
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.71
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.7
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.7
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.68
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.68
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.67
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.67
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.63
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.62
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.62
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.61
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.6
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.56
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.52
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.51
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.51
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.51
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.5
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.5
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.5
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.48
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.48
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.48
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.47
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.47
3bor_A237 Human initiation factor 4A-II; translation initiat 99.47
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.45
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.44
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.42
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.39
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.38
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.33
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.31
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.31
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.28
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.28
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.18
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.13
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.09
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 98.62
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.01
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 98.81
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 98.81
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 98.76
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 97.79
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 97.0
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 95.97
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 95.8
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 95.55
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 93.97
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 93.02
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 92.59
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 92.17
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 90.78
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 89.38
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 88.7
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 87.98
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 86.09
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 84.72
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 83.3
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 83.14
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 82.48
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 82.0
1vma_A306 Cell division protein FTSY; TM0570, structural gen 81.93
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
Probab=100.00  E-value=5.5e-196  Score=1725.75  Aligned_cols=738  Identities=47%  Similarity=0.736  Sum_probs=660.0

Q ss_pred             CCCchhhHHHHHHHhCCCeEEecCCCcHHHHHHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHHhhhcCCeEEEEcCC
Q 002898            1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMERVHRFLGLSVGLIQRG   80 (869)
Q Consensus         1 ~rp~dvQl~g~~~L~~G~IaEm~TGEGKTLva~lpa~l~AL~G~~V~VvT~ndyLA~RDae~~~~ly~~LGLsv~~i~~~   80 (869)
                      |+|||||++|+++||+|+||||+||||||++|+||+|+++|.|++|||||||+|||+||++||++||.+|||+|++++++
T Consensus        78 ~~Pt~VQ~~~ip~LlqG~IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg  157 (997)
T 2ipc_A           78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHA  157 (997)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred             CCCcHHHHhhcccccCCceeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCeEEECCCchhhhHHHHhhccchhhhhccCCCCceEEEeechhhhhhhcCCCceeecCCCCCCcccHH
Q 002898           81 MIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYP  160 (869)
Q Consensus        81 ~~~~~rk~aY~~DI~YgT~~e~~fDyLrD~l~~~~~~~v~r~~R~~~~aIVDEvDsiLiDea~tPLiiSg~~~~~~~~~~  160 (869)
                      +++++|+.+|.|||+||||++||||||+|++..+++..+++++|+++|+|||||||||+|+|+||||||||.+....+|.
T Consensus       158 ~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~  237 (997)
T 2ipc_A          158 STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYY  237 (997)
T ss_dssp             CCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHH
T ss_pred             CCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHH
Confidence            99999999999999999999999999999998887788888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccCC------------CeEEeCCCCeeeccHhhHHHHHHHhccCCCCCCCC-cHHHHHHHHHHHHHHhccC
Q 002898          161 VAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWDEND-PWARFVMNALKAKEFYRRD  227 (869)
Q Consensus       161 ~~~~~~~~l~~~~------------~y~~d~~~k~v~Lt~~G~~~~e~~~~~~~L~~~~~-~~~~~i~~Al~A~~l~~~d  227 (869)
                      .++.++..|+++.            ||++|++.++++||++|+.++|+++++++||++.+ .|.+||++||+|+++|++|
T Consensus       238 ~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd  317 (997)
T 2ipc_A          238 KMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD  317 (997)
T ss_dssp             HHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHhcC
Confidence            9999999997643            99999999999999999999999999999999876 5999999999999999999


Q ss_pred             cceEEECCeEEEEeCCCCccccccccChhhhHHHHhhhCCccccCcceeeeeeehhHhhhcCcccccCCCcccHHHHHHH
Q 002898          228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLK  307 (869)
Q Consensus       228 ~dYiV~d~~I~ivDe~TGR~~~gr~ws~GLHQaieaKEgv~i~~e~~t~a~It~q~~Fr~Y~kL~GmTGTa~te~~Ef~~  307 (869)
                      +||||+||+|+|||+||||+|+|||||+||||||||||||+|+++|+|+|+|||||||++|++|+||||||+|++.||++
T Consensus       318 ~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~  397 (997)
T 2ipc_A          318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQE  397 (997)
T ss_dssp             HHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH
T ss_pred             CCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEeCCCCCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHH-------------
Q 002898          308 MFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLK-------------  374 (869)
Q Consensus       308 iY~l~vv~IPt~~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~-------------  374 (869)
                      +||++|++||||+|++|+|+||.||.|+.+||.||+++|.++|++||||||||.||+.||.||++|+             
T Consensus       398 iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~  477 (997)
T 2ipc_A          398 IYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRL  477 (997)
T ss_dssp             HHCCCEEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHH
T ss_pred             HhCCCEEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999             


Q ss_pred             ---------------------------------------------------------------HCCCCeEEeecCCcchh
Q 002898          375 ---------------------------------------------------------------QQGIPHNVLNARPKYAA  391 (869)
Q Consensus       375 ---------------------------------------------------------------~~gi~~~vLna~~~~~~  391 (869)
                                                                                     +.||||+||||  ++|+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNA--K~he  555 (997)
T 2ipc_A          478 ELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNA--KHHA  555 (997)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECS--SSHH
T ss_pred             hhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccc--cchH
Confidence                                                                           78999999999  6899


Q ss_pred             hHHHHHHHcCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHH
Q 002898          392 REAETVAQAGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLA  471 (869)
Q Consensus       392 ~Ea~Iia~AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (869)
                      +||+||++||++|+||||||||||||||+|||||+++++..++...                      ++...  + ...
T Consensus       556 ~EAeIIAqAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~----------------------~~~~~--~-~~~  610 (997)
T 2ipc_A          556 REAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEG----------------------FDRYE--W-KVE  610 (997)
T ss_dssp             HHHHHHHTTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSC----------------------SSTTH--H-HHH
T ss_pred             HHHHHHHhcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhc----------------------ccccc--c-ccc
Confidence            9999999999999999999999999999999999999864321100                      00000  0 000


Q ss_pred             HHHHHHHHHhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccc
Q 002898          472 LLAKAALLAKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEG  551 (869)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (869)
                      +.     ...++.+.+  .|..                .+.+              ....++.++ +.+.++++.|.+++
T Consensus       611 ~~-----~~~~~~~~~--~~~~----------------~~~~--------------~~~~~~~~~-~~~~~~~~~~~~e~  652 (997)
T 2ipc_A          611 LF-----IKKMVAGKE--EEAR----------------ALAQ--------------ELGIREELL-ERIREIREECKQDE  652 (997)
T ss_dssp             HH-----HHHHHHTCH--HHHH----------------HHHH--------------HTTCCHHHH-HHHHHHHHHHHHHH
T ss_pred             cc-----cccccccch--hhcc----------------ccch--------------hhhhhhhHH-HHHHHhhhhhhhhh
Confidence            00     000000000  0000                0000              001122222 23566899999999


Q ss_pred             hhhhhcCCeEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCcccchhH
Q 002898          552 SEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAI  631 (869)
Q Consensus       552 ~~V~~~GGL~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~  631 (869)
                      ++|+++|||||||||||||||||||||||||||||||||+|||||||||||+||  ++++.++|.++++++|+||+|+|+
T Consensus       653 ~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdLmr~fg--~~~~~~~m~~l~~~~~~~Ie~~~v  730 (997)
T 2ipc_A          653 ERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFA--SDRVIAMLDRMGFDDSEPIEHPMV  730 (997)
T ss_dssp             HHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHHHHHSS--CTTHHHHHHHTCCCSSSCBCCHHH
T ss_pred             hHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChHHHHhhc--hHHHHHHHHHcCCCCCCcccchHH
Confidence            999999999999999999999999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 002898          632 VRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYW  711 (869)
Q Consensus       632 ~~~i~~aQ~~~e~~~~~~Rk~~~~yd~v~~~QR~~iY~~R~~iL~~~~~di~e~i~~~i~~~i~~iv~~~~~~~~~~~~w  711 (869)
                      +++|++||++||++||++||++|+||||||.||++||++|+.||++..+++++.|.+|++++++.+++.++++..++++|
T Consensus       731 ~~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~~~~~~~~~i~~~~~~~i~~~v~~~~~~~~~~~~w  810 (997)
T 2ipc_A          731 TRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDW  810 (997)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSSSC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhcCCcCChhhc
Confidence            99999999999999999999999999999999999999999999763368999999999999999999988777778899


Q ss_pred             cHHHHHHHHHHHhhhhhhhhhccCccchhhhhhhcccccccccccCCCCCCCCCCCccccccccccchhhhhhhhccccc
Q 002898          712 SLDKLLKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDL  791 (869)
Q Consensus       712 dl~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  791 (869)
                      |+++|...+...++..         .+                                       .++..|-       
T Consensus       811 ~~~~l~~~~~~~~~~~---------~~---------------------------------------~~~~~~~-------  835 (997)
T 2ipc_A          811 DLEGLKATLLDTAPQL---------QD---------------------------------------FPFAELR-------  835 (997)
T ss_dssp             CHHHHHHHHHHSSCCC---------CS---------------------------------------SHHHHHH-------
T ss_pred             CHHHHHHHHHHhcCcc---------cC---------------------------------------CCHHHHh-------
Confidence            9999998876532210         00                                       0111220       


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcccc
Q 002898          792 TKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVYHNIYFSQ  868 (869)
Q Consensus       792 ~~~~~~~~~~~~l~~~L~e~~~~~y~~k~~~~~~~~e~~~~~ER~vlL~~ID~~W~eHLd~Md~LRegIgLR~Y~q~  868 (869)
                            ..+.+++.++|.+.+.+.|..+  +..++++.|+++||.++|++||.+|++||++||+||+||+||+|||+
T Consensus       836 ------~~~~~~~~~~l~~~~~~~y~~k--~~~~~~~~~~~~er~~~L~~iD~~W~eHl~~md~Lr~~i~lr~y~q~  904 (997)
T 2ipc_A          836 ------ALKAEEAVERLVEAALKAYEAR--EAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQK  904 (997)
T ss_dssp             ------HSCSHHHHHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSS
T ss_pred             ------ccCHHHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence                  1245778999999999999876  45578999999999999999999999999999999999999999997
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 869
d1nkta3288 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa 3e-53
d1nkta3288 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPa 2e-16
d1tf5a3273 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase 6e-46
d1tf5a3273 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase 4e-20
d1tf5a1122 a.162.1.1 (A:227-348) Pre-protein crosslinking dom 6e-32
d1nkta4219 c.37.1.19 (A:397-615) Translocation ATPase SecA, n 3e-30
d1nkta4219 c.37.1.19 (A:397-615) Translocation ATPase SecA, n 3e-23
d1nkta1124 a.162.1.1 (A:226-349) Pre-protein crosslinking dom 3e-30
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 2e-22
d1tf5a4175 c.37.1.19 (A:396-570) Translocation ATPase SecA, n 2e-22
d1tf5a2210 a.172.1.1 (A:571-780) Helical scaffold and wing do 5e-09
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 9e-09
d1nkta2220 a.172.1.1 (A:616-835) Helical scaffold and wing do 5e-08
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  184 bits (469), Expect = 3e-53
 Identities = 98/151 (64%), Positives = 115/151 (76%), Gaps = 3/151 (1%)

Query: 1   MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
            R FDVQ++G A LH G++AEMKTGEGKTL   L AYLNAL G GVH+VTVNDYLA+RD+
Sbjct: 96  QRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDS 155

Query: 61  EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
           EWM RVHRFLGL VG+I   M P+ERR  Y  DITY  N+E GFDYLRDN+A + + LV 
Sbjct: 156 EWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 215

Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGE 151
           R     H+AIVDEVDS+LIDE R PL+IS +
Sbjct: 216 RG---HHYAIVDEVDSILIDEARTPLIISNQ 243
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 273 Back     information, alignment and structure
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} Length = 122 Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Length = 219 Back     information, alignment and structure
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 124 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 Back     information, alignment and structure
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} Length = 210 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 220 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query869
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 100.0
d1tf5a2210 Helical scaffold and wing domains of SecA {Bacillu 100.0
d1nkta2220 Helical scaffold and wing domains of SecA {Mycobac 100.0
d1nkta1124 Pre-protein crosslinking domain of SecA {Mycobacte 100.0
d1tf5a1122 Pre-protein crosslinking domain of SecA {Bacillus 100.0
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.7
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.68
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.64
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.64
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.63
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.62
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.6
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.6
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.58
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.56
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.4
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.4
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.39
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.38
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.33
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.31
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.28
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.26
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.19
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.18
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.09
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.03
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.0
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 98.94
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.93
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 98.81
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 98.71
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.57
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.47
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 98.45
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.43
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.36
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.3
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.18
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.1
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 98.04
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 98.04
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 97.9
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 97.88
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 97.62
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 96.66
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 95.96
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 90.78
d2qy9a2211 GTPase domain of the signal recognition particle r 90.2
d1ls1a2207 GTPase domain of the signal sequence recognition p 89.5
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 86.18
d1vmaa2213 GTPase domain of the signal recognition particle r 86.15
d1j8yf2211 GTPase domain of the signal sequence recognition p 82.27
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.7e-76  Score=598.99  Aligned_cols=219  Identities=46%  Similarity=0.700  Sum_probs=197.6

Q ss_pred             CCcccccCCCeEEeChhHHHHHHHHHHHHHHhcCCcEEEEecchhhHHHHHHHHHHCCCCeEEeecCCcchhhHHHHHHH
Q 002898          320 LPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQ  399 (869)
Q Consensus       320 ~p~~R~d~~d~i~~t~~~K~~aii~ei~~~~~~grPVLV~t~Si~~SE~ls~~L~~~gi~~~vLna~~~~~~~Ea~Iia~  399 (869)
                      .|++|+|+||.||.|..+||+||+++|.++|++||||||||.||+.||.||.+|++.||+|+||||  ++|++||+||++
T Consensus         1 lP~iR~D~~D~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNA--K~herEAeIIAq   78 (219)
T d1nkta4           1 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAV   78 (219)
T ss_dssp             SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECS--SCHHHHHHHHHT
T ss_pred             CCCcccCCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccch--hhHHHHHHHHHh
Confidence            389999999999999999999999999999999999999999999999999999999999999999  689999999999


Q ss_pred             cCCCccEEEEcCCCcCCcceecCCChhHHHHHHHHHHHHHHHhhhhcccccccCCCCcchhhhhhhcchhHHHHHHHHHH
Q 002898          400 AGRKYAITISTNMAGRGTDIILGGNPKMLAKKIIEDRLLLLLTREALNVEVDDKTSSPKVLSEIKLGSSSLALLAKAALL  479 (869)
Q Consensus       400 AG~~g~VTIATnmAGRGTDIkLgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (869)
                      ||++|+||||||||||||||+||||++++++..+........                                      
T Consensus        79 AG~~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~--------------------------------------  120 (219)
T d1nkta4          79 AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPV--------------------------------------  120 (219)
T ss_dssp             TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTT--------------------------------------
T ss_pred             cccCCcEEeeccccCCCCceeecCchhhhhHHHhhhcccCcc--------------------------------------
Confidence            999999999999999999999999999999876654210000                                      


Q ss_pred             HhhhccccCCchhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhccCCCCChhhHHHHhhhhhhccccccccchhhhhcCC
Q 002898          480 AKYVGKAEGKSWTYQEAKSFFSESVEMSQSMNLKELQKLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGG  559 (869)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG  559 (869)
                                                                     ........+|...+..+.+.|.+++++|+++||
T Consensus       121 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG  153 (219)
T d1nkta4         121 -----------------------------------------------ETPEEYEAAWHSELPIVKEEASKEAKEVIEAGG  153 (219)
T ss_dssp             -----------------------------------------------TSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred             -----------------------------------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                                                           000012234455566778889999999999999


Q ss_pred             eEEEeecCCCchhHHHHhhhccccCCCCCceeEEEeccchhhhhccCCchhHHHHHhhcCCCCCCccc
Q 002898          560 LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISRITNDEDMPIE  627 (869)
Q Consensus       560 L~VIgTerhes~RiD~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~~~i~  627 (869)
                      |||||||||||||||||||||||||||||||+||||||||||++||  ++++.++|.++++++|+||+
T Consensus       154 L~VIGTErHeSrRIDnQLRGRsGRQGDPGsSrFflSLeDdLmr~F~--~~~i~~lm~~l~~~e~~~Ie  219 (219)
T d1nkta4         154 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFN--GAALETLLTRLNLPDDVPIE  219 (219)
T ss_dssp             EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTT--HHHHHHHHHHTTCCTTSCCC
T ss_pred             cEEEeccccccccccccccccccccCCCccceeEEeccHHHHHHHC--hHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999  99999999999999999986
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure