Citrus Sinensis ID: 002900

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------87
MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
cccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHccccccccccHHHHHHHHHcccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEcccccEEEEEEEEEEccccccccEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEccccccccccccccccccccEEEEccccEEEcccccHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccEEEEEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHcc
cccHHHcccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEcHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHcccccHHHHHHHcccccccHHHHHHHHHHcccccccccHHccccHHccccHHHHcccccccccccccccccccHHHHHHHHHHccHHHHHHcccccccccEEcccccccEEEEEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccccEEEEEEEEEccccccccccEEEEEccccccccccEEEEEEEEEEEEEEccccccEccccEEEEEEcccEEEcHHHHEEEcccccHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHccEEccccccccccccEEEEEEEEEEccccEEEEEEEEEEEcccEEEEEEEEEcccHHHHHHHHHHHHcc
maqplvkkdddrddeaeyspflgiekGAVLQEarvfndpqldprrcSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMkdmtsktdMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSltrgtvrsplAQCLLIRYTTQVIREAattqtgdrpfyDFLESCLRHKAEMVIFEAARAITELngvtnrelTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILreeggfeyKKAIVDSIVILIRDipdakengLLHLCEFIEDCEFTYLSTQILHFlgtegpktsdpskyIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRClydgddevRDRATLYLNtvgsdgevietdkdVKDFlfgsldiplanietslknyepaeqpfdinsvpkevktqplaekkapgkmpaglgappsgppstVDAYEKLLSsipefsdfgklfkssapvelteaETEYAVNVVKHIFDRHVVFQynctntipeqlLENVTVIVDASEAEEFAEVaskplrslpydspgqifgafekpegvpavgkfSNMLRFIVKevdpttgdveddgvedeyqleDLEVVAADYVMKVGVSNFRNawesigpdfervdeyglgprESLAEAVSAVISLlgmqpcegtevvannsrshtcllsgvfIGNVKVLVRLQFGIDGPKEVAMKLAVrseddnvsDMIHEIVASG
maqplvkkdddrddeaEYSPflgiekgaVLQEARVfndpqldprrcSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKelspsadeVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTsltrgtvrsplaqCLLIRYTTQVIREAattqtgdrpfYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNkslisdqnrsIATLAITTllktgnessVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLgtegpktsdpSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYlntvgsdgevietDKDVKDFLFGSLDIPLANIETSLKNYEPAeqpfdinsvpkevKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVaskplrslpYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEvdpttgdveddgVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLavrseddnvsdMIHEIVASG
MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSiatlaittllKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEKKAPGKMpaglgappsgppsTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDaseaeefaevasKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTgdveddgvedeYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
********************FLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGP****PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLANIETSL******************************************************L*SIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFA***************GQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLA*******************
*********************LGIEKGAVLQEAR******LDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDG***********FLFGSLDIPLA**************************************************************************************TEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCE********SRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVAS*
***************AEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGL*********TVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
*****************YSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVK*************************STVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVAS*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query869 2.2.26 [Sep-21-2011]
Q6Z382889 Coatomer subunit gamma-2 yes no 1.0 0.977 0.840 0.0
Q0WW26886 Coatomer subunit gamma OS yes no 0.998 0.979 0.828 0.0
Q8H852884 Coatomer subunit gamma-1 no no 0.996 0.979 0.808 0.0
Q9I8E6873 Coatomer subunit gamma-2 N/A no 0.970 0.965 0.522 0.0
Q9PUE4873 Coatomer subunit gamma-2 yes no 0.971 0.966 0.517 0.0
A2VE21871 Coatomer subunit gamma-2 yes no 0.968 0.966 0.517 0.0
Q9UBF2871 Coatomer subunit gamma-2 yes no 0.968 0.966 0.514 0.0
Q9QXK3871 Coatomer subunit gamma-2 yes no 0.968 0.966 0.512 0.0
Q66JI9872 Coatomer subunit gamma-2 yes no 0.970 0.966 0.521 0.0
Q9Y678874 Coatomer subunit gamma-1 no no 0.972 0.966 0.507 0.0
>sp|Q6Z382|COPG2_ORYSJ Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1 Back     alignment and function desciption
 Score = 1520 bits (3936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/889 (84%), Positives = 806/889 (90%), Gaps = 20/889 (2%)

Query: 1   MAQPLV-KKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQ 59
           MAQPLV KKDDD D+E  YSPFLGIEKGAVLQEARVF+DPQLD RRC QVITKLLYLLNQ
Sbjct: 1   MAQPLVVKKDDDLDEEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQ 60

Query: 60  GETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKT 119
           G+TFTK+EATEVFFA TKLFQS+D GLRRMVYLMIKELSPSADEVIIVTSSLMKDM SKT
Sbjct: 61  GDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKT 120

Query: 120 DMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRW 179
           DMYRANAIRVLCRI D TLLTQIERYLKQAIVDKNPVVASAALVSGI+LLQT+PE+VKRW
Sbjct: 121 DMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRW 180

Query: 180 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTT 239
           SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRG+VRSPLAQCLLIRYT+
Sbjct: 181 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTS 240

Query: 240 QVIREAA-TTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQL 298
           QVIRE++  +Q GDRPF+DFLESCLR+KAEMVI EAARAITELNGVT+RELTPAITVLQL
Sbjct: 241 QVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQL 300

Query: 299 FLSSSKPVLRFAAVRTLNK-----------------SLISDQNRSIATLAITTLLKTGNE 341
           FLSSSKPVLRFAAVRTLNK                 SLISDQNRSIATLAITTLLKTGNE
Sbjct: 301 FLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNE 360

Query: 342 SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK 401
           SSVDRLMKQ+TNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK
Sbjct: 361 SSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK 420

Query: 402 KAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIR 461
           KAIVDSI+ILIRDIPDAKE+GL HLCEFIEDCEFTY+STQILHFLG EGPKTSDPSKYIR
Sbjct: 421 KAIVDSIIILIRDIPDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIR 480

Query: 462 YIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNT 521
           YIYNRV LENATVRA+AVSTLAKFGA+VD+LKPR+FVLLRRCL+DGDDEVRDRATLYL  
Sbjct: 481 YIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKL 540

Query: 522 VGSDGEVIETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEK 581
           +G +  V ET+KDV +FLFGS DIPL N+ETSL+NYEP+E PFDI+SV  E K+QPLAEK
Sbjct: 541 LGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAEK 600

Query: 582 KAPGKMPAGLGAPPSGPPSTVDA-YEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVN 640
           K  GK P G  +  SGP  TVDA YEKLLSSIPEF+ FGKLFKSSAPVELTEAETEY+VN
Sbjct: 601 KTTGKKPTGPASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVN 660

Query: 641 VVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIF 700
           VVKHI+D HVV QYNCTNTIPEQLLE V V VDASEA+EF+EVA+K LRSLPYDSPGQ F
Sbjct: 661 VVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTF 720

Query: 701 GAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGV 760
            AFEK EGV A GKFSN+L+FIVKEVDP+TG+ +DDGVEDEYQLEDLE+ +ADY++KVGV
Sbjct: 721 VAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGV 780

Query: 761 SNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCL 820
           SNFRNAWES+ P+ ERVDEYGLG RESLAEAVSAVI +LGMQPCEGT+VV +NSRSHTCL
Sbjct: 781 SNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCL 840

Query: 821 LSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 869
           LSGVFIGNVKVLVRL FG+ GPKEVAMKLAVRS+D  +SD IHEIVA+G
Sbjct: 841 LSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG 889
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q0WW26|COPG_ARATH Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1 SV=2 Back     alignment and function description
>sp|Q8H852|COPG1_ORYSJ Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica GN=Os03g0227000 PE=2 SV=2 Back     alignment and function description
>sp|Q9I8E6|COPG2_TAKRU Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1 Back     alignment and function description
>sp|Q9PUE4|COPG2_DANRE Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2 Back     alignment and function description
>sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1 Back     alignment and function description
>sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1 Back     alignment and function description
>sp|Q66JI9|COPG2_XENTR Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y678|COPG1_HUMAN Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query869
224077826885 predicted protein [Populus trichocarpa] 0.996 0.978 0.897 0.0
224105405886 predicted protein [Populus trichocarpa] 1.0 0.980 0.891 0.0
359475304887 PREDICTED: coatomer subunit gamma-2-like 1.0 0.979 0.906 0.0
449465393887 PREDICTED: coatomer subunit gamma-like [ 1.0 0.979 0.889 0.0
255536821887 coatomer gamma subunit, putative [Ricinu 1.0 0.979 0.900 0.0
356545247887 PREDICTED: coatomer subunit gamma-like [ 1.0 0.979 0.889 0.0
356538767887 PREDICTED: coatomer subunit gamma-2-like 1.0 0.979 0.886 0.0
356517094882 PREDICTED: coatomer subunit gamma-like [ 0.995 0.980 0.874 0.0
357467249887 Coatomer subunit gamma [Medicago truncat 1.0 0.979 0.871 0.0
356508418886 PREDICTED: coatomer subunit gamma-like [ 1.0 0.980 0.875 0.0
>gi|224077826|ref|XP_002305424.1| predicted protein [Populus trichocarpa] gi|222848388|gb|EEE85935.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1639 bits (4245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/884 (89%), Positives = 843/884 (95%), Gaps = 18/884 (2%)

Query: 1   MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQG 60
           MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQG
Sbjct: 1   MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQG 60

Query: 61  ETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTD 120
           ++FTK+EATEVFF+VTKLFQS+D+GLRRMVYL+IKELSPSADEVIIVTSSLMKDM SKTD
Sbjct: 61  DSFTKVEATEVFFSVTKLFQSKDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTD 120

Query: 121 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180
           MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQT PEIVKRWS
Sbjct: 121 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWS 180

Query: 181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQ 240
           NEVQEAVQSRAALVQFHALALL QIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYT+Q
Sbjct: 181 NEVQEAVQSRAALVQFHALALLQQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQ 240

Query: 241 VIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFL 300
           VIRE+ +TQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL+GVT+RELTPAITVLQLFL
Sbjct: 241 VIRES-STQTGDRPFYDFLESCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFL 299

Query: 301 SSSKPVLRFAAVRTLNK-----------------SLISDQNRSIATLAITTLLKTGNESS 343
           SSSKPVLRFAAVRTLNK                 SLISDQNRSIATLAITTLLKTGNESS
Sbjct: 300 SSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESS 359

Query: 344 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKA 403
           VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKA
Sbjct: 360 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKA 419

Query: 404 IVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYI 463
           IVDSIVILIRDIP+AKE+GLLHLCEFIEDCEFTYLSTQILHFLG EGPKT+DPSKYIRYI
Sbjct: 420 IVDSIVILIRDIPEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTTDPSKYIRYI 479

Query: 464 YNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVG 523
           YNRVHLENATVRAAAVSTLAKFGAMVDALKPR+FVLLRRC++D DDEVRDRATLYLNT+G
Sbjct: 480 YNRVHLENATVRAAAVSTLAKFGAMVDALKPRIFVLLRRCIFDSDDEVRDRATLYLNTLG 539

Query: 524 SDGEVIETDKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEKKA 583
            DGEV+ETDK+VK FLFG LDIPL N+ETSLKNYEP+E+PFDI+SVPKEVK+QPL EKKA
Sbjct: 540 GDGEVVETDKEVKTFLFGDLDIPLVNLETSLKNYEPSEEPFDIHSVPKEVKSQPLVEKKA 599

Query: 584 PGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVK 643
           PGK PAGLGAPP+GPPSTVDAYE+LLSSIPEFS+FGKLFKSSAPVELTEAETEYAVNVVK
Sbjct: 600 PGKKPAGLGAPPAGPPSTVDAYERLLSSIPEFSNFGKLFKSSAPVELTEAETEYAVNVVK 659

Query: 644 HIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAF 703
           HIFDRHVVFQYNCTNTIPEQLLENV+VIVDASEA++FAEVASKPLRSLPYD+PGQ F AF
Sbjct: 660 HIFDRHVVFQYNCTNTIPEQLLENVSVIVDASEADDFAEVASKPLRSLPYDTPGQTFVAF 719

Query: 704 EKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNF 763
           EKPEG+  VGKF+NMLRFIVKEVDP+TG+ E+DGVEDEYQLEDLEVVAAD++MKVGVSNF
Sbjct: 720 EKPEGITTVGKFTNMLRFIVKEVDPSTGEAEEDGVEDEYQLEDLEVVAADFMMKVGVSNF 779

Query: 764 RNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSG 823
           RNAWES+G DFERVDEYGLGPRESLAEAVSAVI+LLGMQPCEGTEVVA NSRSHTCLLSG
Sbjct: 780 RNAWESMGDDFERVDEYGLGPRESLAEAVSAVINLLGMQPCEGTEVVATNSRSHTCLLSG 839

Query: 824 VFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 867
           V +GNVKVLVRLQFGI+G ++VAMKL+VRSED+ + D IHEIV+
Sbjct: 840 VSLGNVKVLVRLQFGIEGSRDVAMKLSVRSEDEAIGDAIHEIVS 883

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105405|ref|XP_002313799.1| predicted protein [Populus trichocarpa] gi|222850207|gb|EEE87754.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359475304|ref|XP_003631645.1| PREDICTED: coatomer subunit gamma-2-like [Vitis vinifera] gi|297741448|emb|CBI32579.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449465393|ref|XP_004150412.1| PREDICTED: coatomer subunit gamma-like [Cucumis sativus] gi|449496814|ref|XP_004160233.1| PREDICTED: coatomer subunit gamma-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255536821|ref|XP_002509477.1| coatomer gamma subunit, putative [Ricinus communis] gi|223549376|gb|EEF50864.1| coatomer gamma subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356545247|ref|XP_003541056.1| PREDICTED: coatomer subunit gamma-like [Glycine max] Back     alignment and taxonomy information
>gi|356538767|ref|XP_003537872.1| PREDICTED: coatomer subunit gamma-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356517094|ref|XP_003527225.1| PREDICTED: coatomer subunit gamma-like [Glycine max] Back     alignment and taxonomy information
>gi|357467249|ref|XP_003603909.1| Coatomer subunit gamma [Medicago truncatula] gi|355492957|gb|AES74160.1| Coatomer subunit gamma [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508418|ref|XP_003522954.1| PREDICTED: coatomer subunit gamma-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query869
TAIR|locus:2139479886 AT4G34450 [Arabidopsis thalian 0.713 0.699 0.747 0.0
UNIPROTKB|E1C7T8871 COPG2 "Coatomer subunit gamma" 0.968 0.966 0.5 3.4e-219
UNIPROTKB|A2VE21871 COPG2 "Coatomer subunit gamma- 0.968 0.966 0.493 4e-216
UNIPROTKB|Q9UBF2871 COPG2 "Coatomer subunit gamma- 0.967 0.965 0.493 5.2e-216
MGI|MGI:1858683871 Copg2 "coatomer protein comple 0.968 0.966 0.492 5.9e-215
UNIPROTKB|E2RPG9874 COPG1 "Coatomer subunit gamma" 0.972 0.966 0.486 3.3e-214
UNIPROTKB|Q9Y678874 COPG1 "Coatomer subunit gamma- 0.972 0.966 0.487 6.8e-214
UNIPROTKB|P53620874 COPG1 "Coatomer subunit gamma- 0.972 0.966 0.485 1.8e-213
UNIPROTKB|F1NB52874 COPG "Coatomer subunit gamma" 0.972 0.966 0.488 1e-212
UNIPROTKB|F1PHS71010 COPG2 "Coatomer subunit gamma" 0.947 0.814 0.494 7e-212
TAIR|locus:2139479 AT4G34450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2381 (843.2 bits), Expect = 0., Sum P(2) = 0.
 Identities = 477/638 (74%), Positives = 523/638 (81%)

Query:   249 QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLR 308
             Q+G+RPFY+FLESCLRHKAEMVI EAARAITEL+GVT+RELTPAITVLQLFLSS +PVLR
Sbjct:   250 QSGERPFYEFLESCLRHKAEMVILEAARAITELDGVTSRELTPAITVLQLFLSSPRPVLR 309

Query:   309 FAAVRTLNK-----------------SLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQI 351
             FAAVRTLNK                 SLISDQNRS          KTGNESSV+RLMKQI
Sbjct:   310 FAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVERLMKQI 369

Query:   352 TNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVIL 411
             TNFMSDIADEFKIVVV+AIRSLC+KFPLKYRSLM FLSNILREEGGFEYK+AIVDSIV +
Sbjct:   370 TNFMSDIADEFKIVVVDAIRSLCVKFPLKYRSLMTFLSNILREEGGFEYKRAIVDSIVTI 429

Query:   412 IRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLEN 471
             IRDIPDAKE+GLLHLCEFIEDCEFTYLSTQILHFLG EGP TSDPSKYIRYIYNRVHLEN
Sbjct:   430 IRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPNTSDPSKYIRYIYNRVHLEN 489

Query:   472 ATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIET 531
             ATVRAAAVSTLAKFG MV++LKPR+ VLL+RC+YD DDEVRDRATLYL+ +G DG V +T
Sbjct:   490 ATVRAAAVSTLAKFGFMVESLKPRITVLLKRCIYDSDDEVRDRATLYLSVLGGDGTV-DT 548

Query:   532 DKDVKDFLFGSLDIPLANIETSLKNYEPAEQPFDINSVPKEVKTQPLAEKKAPGKMXXXX 591
             DK+ KDFLFGSL++PL N+ETSLKNYEP+E+ FDINSVPKEVK+QPLAEKKA GK     
Sbjct:   549 DKESKDFLFGSLEVPLVNMETSLKNYEPSEEAFDINSVPKEVKSQPLAEKKAQGKKPTGL 608

Query:   592 XXXXXXXXXTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVV 651
                        D YE+LLSSIPEF+ FGKLFKSS PVELTEAETEYAVNVVKHIFD HVV
Sbjct:   609 GAPPAAPASGFDGYERLLSSIPEFAAFGKLFKSSLPVELTEAETEYAVNVVKHIFDSHVV 668

Query:   652 FQYNCTNTIPEQLLENVTVIVDXXXXXXXXXXXXKPLRSLPYDSPGQIFGAFEKPEGVPA 711
             FQYNCTNTIPEQLLE V VIVD            K L SLPYDSPGQ F  FEKP GVPA
Sbjct:   669 FQYNCTNTIPEQLLERVNVIVDASEAEEFSEVTSKALNSLPYDSPGQAFVVFEKPAGVPA 728

Query:   712 VGKFSNMLRFIVKEVDPTTXXXXXXXXXXXYQLEDLEVVAADYVMKVGVSNFRNAWESIG 771
             VGKFSN L F+VKEVDP+T           YQLEDLEVVA DY++KVGVSNFRNAWES+ 
Sbjct:   729 VGKFSNTLTFVVKEVDPSTGEAEDDGVEDEYQLEDLEVVAGDYMVKVGVSNFRNAWESMD 788

Query:   772 PDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKV 831
              + ERVDEYGLG RESL EAV AV+ LLGMQ CEGTE +  N+RSHTCLLSGV+IGNVKV
Sbjct:   789 EEDERVDEYGLGQRESLGEAVKAVMDLLGMQTCEGTETIPLNARSHTCLLSGVYIGNVKV 848

Query:   832 LVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 869
             LVR QFG+D  K++AMKL VR+ED +V++ IHEIVASG
Sbjct:   849 LVRAQFGMDSSKDIAMKLTVRAEDVSVAEAIHEIVASG 886
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005798 "Golgi-associated vesicle" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030126 "COPI vesicle coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|E1C7T8 COPG2 "Coatomer subunit gamma" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE21 COPG2 "Coatomer subunit gamma-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBF2 COPG2 "Coatomer subunit gamma-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1858683 Copg2 "coatomer protein complex, subunit gamma 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPG9 COPG1 "Coatomer subunit gamma" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y678 COPG1 "Coatomer subunit gamma-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P53620 COPG1 "Coatomer subunit gamma-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NB52 COPG "Coatomer subunit gamma" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHS7 COPG2 "Coatomer subunit gamma" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WW26COPG_ARATHNo assigned EC number0.82860.99880.9796yesno
Q54HL0COPG_DICDINo assigned EC number0.48680.97000.9387yesno
P32074COPG_YEASTNo assigned EC number0.34350.89870.8352yesno
Q9PUE4COPG2_DANRENo assigned EC number0.51700.97120.9667yesno
Q22498COPG_CAEELNo assigned EC number0.46070.96660.9655yesno
Q6DKD7COPG2_XENLANo assigned EC number0.51470.97000.9667N/Ano
Q6Z382COPG2_ORYSJNo assigned EC number0.84021.00.9775yesno
Q29AE5COPG_DROPSNo assigned EC number0.47450.96890.9589yesno
Q8I0G5COPG_DROMENo assigned EC number0.48130.96890.9535yesno
Q7PVF6COPG_ANOGANo assigned EC number0.49480.95510.9562yesno
A2VE21COPG2_BOVINNo assigned EC number0.51700.96890.9667yesno
P87140COPG_SCHPONo assigned EC number0.41650.96080.9226yesno
Q8H852COPG1_ORYSJNo assigned EC number0.80830.99650.9796nono
Q66JI9COPG2_XENTRNo assigned EC number0.52150.97000.9667yesno
Q9QXK3COPG2_MOUSENo assigned EC number0.51240.96890.9667yesno
Q9I8E6COPG2_TAKRUNo assigned EC number0.52200.97000.9656N/Ano
Q9UBF2COPG2_HUMANNo assigned EC number0.51470.96890.9667yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IV1272
hypothetical protein (886 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.9637.1
hypothetical protein (907 aa)
   •••• 0.512
eugene3.00150490
hypothetical protein (1219 aa)
   •••• 0.496
eugene3.00120688
hypothetical protein (1221 aa)
   •••• 0.491

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query869
COG5240898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 0.0
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-141
pfam08752269 pfam08752, Gamma-COP, Coatomer gamma subunit appen 1e-116
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 6e-09
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 3e-04
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  619 bits (1598), Expect = 0.0
 Identities = 311/911 (34%), Positives = 465/911 (51%), Gaps = 77/911 (8%)

Query: 7   KKDDDRDDEAEYSPFLGIEKGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTK 65
                         F  + +  +LQ+    FN   +  R   ++++ L YLL+ GE F +
Sbjct: 5   TYKKFMKT----KVFTTLTERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPE 60

Query: 66  IEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKT-DMYRA 124
             AT +FFA+ KLFQ +D+ LR+ VY  IKELS   ++V++ TSS+MKD+     D  + 
Sbjct: 61  ATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKP 120

Query: 125 NAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQ 184
            AIR L  + DG  +   ERYL QA V  +    SAALV   HLL       KRW NE Q
Sbjct: 121 MAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQ 180

Query: 185 EAVQSRAA----------------LVQFHALALLHQIRQNDRLAVSKLVTSLT-RGTVRS 227
           EAV                     + Q+HAL LL+Q ++ D++A  KLV       ++++
Sbjct: 181 EAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKN 240

Query: 228 PLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN--GVT 285
            LA  LL+R T ++++E +      RPF   L S L  K EMV  EAARA+  L+   V 
Sbjct: 241 QLAGVLLVRATVELLKENSQALLQLRPF---LNSWLSDKFEMVFLEAARAVCALSEENVG 297

Query: 286 NRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-----------------SLISDQNRSIA 328
           ++ +   ++ L+ FL S++ VLRF+A+R LN+                 SLISD+NR+I+
Sbjct: 298 SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTIS 357

Query: 329 TLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388
           T AITTLLKTG E ++DRL+  I +F+ D++D FKI+ ++A+RSL L FP K  S ++FL
Sbjct: 358 TYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFL 417

Query: 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGT 448
            + L +EGG E+KK +VD+I   + + PD+KE  L  LC FIEDCE+  ++ +IL  LG 
Sbjct: 418 GSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477

Query: 449 EGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV-DALKPR-VFVLLRRCLYD 506
           EGP+   P KY+R+IYNR+ LEN  VR+AAV  L+KF   + D + P+ V   L+RCL D
Sbjct: 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND 537

Query: 507 GDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIP-LANIETSLKNY---EPAEQ 562
            DDEVRDRA+  L  +           D  + LF S ++  + ++E  L  Y   +    
Sbjct: 538 QDDEVRDRASFLLRNM--------RLSDACEPLFSSDELGDIPSLELELIGYISEDSFAT 589

Query: 563 PFDINSVPK----EVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDA-----YEKLLSSIP 613
            FD+N V K    E+K   L  KK+   +      P     S  D      Y   L SI 
Sbjct: 590 AFDVNQVRKFTEDEMKAINLKRKKSETTLDTTESVPKEDANSKADPNIKTKYADELLSIE 649

Query: 614 EFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVD 673
           +   FG+L  SS  + LTE E E+ V VVKH+F   +V Q+   NT+    L N  V++ 
Sbjct: 650 QIKPFGQLVNSSREIILTEPEAEFVVKVVKHVFKDRLVLQFLLENTLEGIQLSNGIVVLT 709

Query: 674 ASEAEEFAEVASKPLRSLPYDS--PGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTG 731
            +  ++      + ++    DS         F+K +     G   N L F  KE++  T 
Sbjct: 710 PTGGDK----KEESIKVDQIDSSEGTLSIVRFKKLDWDIEEGYVVNGLFFTTKEIEGDTS 765

Query: 732 DVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEA 791
           + ED+G +DEY ++  ++ A D+V  V + NF   ++ +    E           S  + 
Sbjct: 766 EPEDEGFQDEYSIDPFQITAGDFVRPVRIKNFPATFDRL--KREITFVLQGDIYASGKKI 823

Query: 792 VSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAV 851
           +  ++      P E TE   N+S +H   L+G      KV +R++          +K+  
Sbjct: 824 LDKILLNSMKIPTEETE-TPNDSNTHVMKLNGKAYHGTKVSIRVKMVYSMACGCTVKVYC 882

Query: 852 RSEDDNVSDMI 862
             E   V+ ++
Sbjct: 883 DGESLYVTQLV 893

Length = 898
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information
>gnl|CDD|220003 pfam08752, Gamma-COP, Coatomer gamma subunit appendage domain Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 869
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
PF08752151 COP-gamma_platf: Coatomer gamma subunit appendage 100.0
PF14806129 Coatomer_b_Cpla: Coatomer beta subunit appendage p 99.7
PF02296113 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal dom 99.6
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.37
PTZ00429746 beta-adaptin; Provisional 99.16
PRK09687280 putative lyase; Provisional 99.1
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.02
PRK09687280 putative lyase; Provisional 98.87
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.86
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.82
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.68
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.63
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.46
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.45
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.4
PF07718140 Coatamer_beta_C: Coatomer beta C-terminal region; 98.37
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.32
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.31
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.25
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.25
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.24
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.2
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.18
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.02
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 97.99
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.83
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.8
KOG18241233 consensus TATA-binding protein-interacting protein 97.79
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.78
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.71
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.65
PF14807104 AP4E_app_platf: Adaptin AP4 complex epsilon append 97.61
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.61
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.6
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.6
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.56
KOG18241233 consensus TATA-binding protein-interacting protein 97.5
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.49
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.48
PF09066114 B2-adapt-app_C: Beta2-adaptin appendage, C-termina 97.47
PF05804708 KAP: Kinesin-associated protein (KAP) 97.4
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.34
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.2
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.19
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.18
TIGR02270410 conserved hypothetical protein. Members are found 97.15
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 97.13
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.01
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.98
TIGR02270410 conserved hypothetical protein. Members are found 96.97
KOG04141251 consensus Chromosome condensation complex Condensi 96.94
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.94
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.65
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 96.64
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.64
PF05804708 KAP: Kinesin-associated protein (KAP) 96.3
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.18
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.15
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.09
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.92
KOG0414 1251 consensus Chromosome condensation complex Condensi 95.77
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.74
KOG1242569 consensus Protein containing adaptin N-terminal re 95.74
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 95.62
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.58
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.42
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.36
KOG1242569 consensus Protein containing adaptin N-terminal re 95.3
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.2
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 95.05
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.84
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 94.81
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 94.58
KOG0413 1529 consensus Uncharacterized conserved protein relate 94.54
KOG4224550 consensus Armadillo repeat protein VAC8 required f 94.48
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.45
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.34
COG50981128 Chromosome condensation complex Condensin, subunit 94.32
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 94.32
COG50981128 Chromosome condensation complex Condensin, subunit 94.27
KOG0567289 consensus HEAT repeat-containing protein [General 93.88
KOG2973353 consensus Uncharacterized conserved protein [Funct 93.86
KOG09151702 consensus Uncharacterized conserved protein [Funct 93.68
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 93.16
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.03
KOG2062929 consensus 26S proteasome regulatory complex, subun 92.84
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 92.64
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 91.82
KOG2025 892 consensus Chromosome condensation complex Condensi 91.69
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 91.27
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.1
smart00638574 LPD_N Lipoprotein N-terminal Domain. 90.86
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.52
KOG2025892 consensus Chromosome condensation complex Condensi 90.27
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 89.97
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 89.68
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 89.54
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 89.36
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 88.84
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 88.27
KOG1293678 consensus Proteins containing armadillo/beta-caten 88.17
KOG4413524 consensus 26S proteasome regulatory complex, subun 88.01
KOG4199461 consensus Uncharacterized conserved protein [Funct 88.0
COG5116926 RPN2 26S proteasome regulatory complex component [ 87.26
KOG19491005 consensus Uncharacterized conserved protein [Funct 86.72
KOG15171387 consensus Guanine nucleotide binding protein MIP1 85.46
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 85.33
KOG04131529 consensus Uncharacterized conserved protein relate 84.9
KOG2062929 consensus 26S proteasome regulatory complex, subun 84.77
KOG1222791 consensus Kinesin associated protein KAP [Intracel 84.52
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 84.06
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 83.8
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 83.65
PF14676158 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4 83.63
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 83.31
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 82.8
KOG19491005 consensus Uncharacterized conserved protein [Funct 82.33
KOG2956516 consensus CLIP-associating protein [General functi 82.21
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 82.14
KOG0567289 consensus HEAT repeat-containing protein [General 82.11
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 81.61
KOG2956516 consensus CLIP-associating protein [General functi 81.57
KOG12481176 consensus Uncharacterized conserved protein [Funct 81.18
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 81.05
COG5218885 YCG1 Chromosome condensation complex Condensin, su 80.91
KOG1293678 consensus Proteins containing armadillo/beta-caten 80.7
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-143  Score=1193.72  Aligned_cols=843  Identities=59%  Similarity=0.916  Sum_probs=779.2

Q ss_pred             CcCcCccCCCcccCCCccchhhhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCcc
Q 002900            6 VKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIG   85 (869)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~k~~~~qe~r~f~~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~   85 (869)
                      +|||+|+++  .++||.+++|++++||+|.||++|+++|||+.+|.||+|++.+|++|+..+++++||+++|+|||+|..
T Consensus         2 ~~~~~~~~~--~s~~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~   79 (865)
T KOG1078|consen    2 SKKDEEDGG--KSNVFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVS   79 (865)
T ss_pred             CccchhhcC--CCccccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHH
Confidence            466655442  368999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhCCCcchhHhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 002900           86 LRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSG  165 (869)
Q Consensus        86 lKrl~Yl~l~~~~~~~d~~~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l~d~~p~VRk~A~lal  165 (869)
                      +||++|+++++++..+++.++++|+++||++..++.+|+.|||+||.|.+..|+..+.+++++++.|++|.|+..|++..
T Consensus        80 LRr~vYl~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss  159 (865)
T KOG1078|consen   80 LRRMVYLAIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSS  159 (865)
T ss_pred             HHHHHHHHHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHHHHHhhccCCCCChhHHHHHHHHHHHhhhhh
Q 002900          166 IHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA  245 (869)
Q Consensus       166 ~~L~~~~pe~v~~~~~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~li~~l~~~~~~~~~~~v~llr~l~~~~~~~  245 (869)
                      +||++.+++++++|.+++++..++.+.+|||||+++||.|+++|++++.|++..+..+...+|++.|.++|+....+.. 
T Consensus       160 ~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~-  238 (865)
T KOG1078|consen  160 YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKE-  238 (865)
T ss_pred             hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhh-
Confidence            9999999999999999999999999999999999999999999999999999998877789999999999999987654 


Q ss_pred             cCCCCCchhhHHHHHHHHhcCChHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhHHHHHHHhcc--------
Q 002900          246 ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK--------  317 (869)
Q Consensus       246 ~~dp~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~ry~aL~~l~~--------  317 (869)
                        ++.....+++++..||+|+..||.|||+++++.+++.....+.+++..|+.|++++++.+||+|+|+|++        
T Consensus       239 --~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~  316 (865)
T KOG1078|consen  239 --NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA  316 (865)
T ss_pred             --cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence              4555667899999999999999999999999999877778888999999999999999999999999998        


Q ss_pred             ---------ccCCCCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 002900          318 ---------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL  388 (869)
Q Consensus       318 ---------~~L~d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~aI~~la~k~~~~~~~~v~~l  388 (869)
                               .+++|+|++|++.|+++|+++|+++|++++++++..|+++++++||+.++++|..||.+||.++..+++||
T Consensus       317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL  396 (865)
T KOG1078|consen  317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL  396 (865)
T ss_pred             ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence                     78899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhHHHHHHhhhcCCCCCCCChHHHHHHHHhhcc
Q 002900          389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVH  468 (869)
Q Consensus       389 l~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~~~~~l~ilGE~~~~~~~~~~~l~~i~~~~~  468 (869)
                      .++|+++|+|++|.+++++|+.+++.+|+.++.++.+||++|+||+++.+...+++++|+.|+...+|.+|+|++|||++
T Consensus       397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi  476 (865)
T KOG1078|consen  397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI  476 (865)
T ss_pred             HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCCCCcchhhhhhhhcCCCCCChH
Q 002900          469 LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEVRDRATLYLNTVGSDGEVIETDKDVKDFLFGSLDIPLA  548 (869)
Q Consensus       469 ~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~d~d~evrdRA~~yl~ll~~~~~~~~~~~~~~~~l~~~~~~~~~  548 (869)
                      +|+..||+++++|++||+..++.+++.|..++++|..|.|+||||||.+|++.+...     +..+...+  +...++++
T Consensus       477 LEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~-----~~~l~~~~--~~l~~s~~  549 (865)
T KOG1078|consen  477 LENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK-----DDVLNQNY--SGLFVSIP  549 (865)
T ss_pred             hhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh-----hhhhcccc--cccccccc
Confidence            999999999999999999888999999999999999999999999999999998743     23444444  66778899


Q ss_pred             HHHHHHhhc--CCCCCCccccCCccccccchhhhhcCCCCCCCCCCCCCCCCCCchhHHHhhhcCCCccccCCCCCcCCC
Q 002900          549 NIETSLKNY--EPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSA  626 (869)
Q Consensus       549 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~~~~~s~  626 (869)
                      .||+.|.+|  ..+..+||+..+|...++..+......+.  .+...+..+..+..+.|..++..+|+|..+|++++++.
T Consensus       550 ~le~~l~~y~~~~~~~~fd~~~v~~~s~~~~~~~~~~~k~--~~~~~~~~~~~~~~d~~~~~l~~i~~~~~lgpl~kSs~  627 (865)
T KOG1078|consen  550 GLERSLVSYITGSFATPFDIKSVPVKSQAEEPAINLELKQ--TLVKAPEKEKIPKVDEYAAELASIPEFKALGPLFKSSR  627 (865)
T ss_pred             hhHHHHHHHhhccccccchhhcchhhcccccccccccccc--cccCCCcccCCCccchhHHHHhccchhhhcCccccccC
Confidence            999999999  46789999999886543322111110000  00012222333445688999999999999999999999


Q ss_pred             ceecCCCCCceEEEEEEEEeCCcEEEEEEeecCCCccccccEEEEEecCCcccceEEeeccCCCCCCCCCceEEEEEecC
Q 002900          627 PVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKP  706 (869)
Q Consensus       627 ~v~lt~~e~ey~v~~~k~~~~~~ivl~f~~~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~i~~~~L~~~~~~~~~v~~~~~  706 (869)
                      ++.|||+|+||+|+|+||+|..|+||||.++||++||.|+|+.+++.+.++  +.+...+|+++||+++++++|+.++.+
T Consensus       628 ~i~LTE~e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~--~evl~~i~~~slpy~qp~~~~tl~~~p  705 (865)
T KOG1078|consen  628 PIELTEPEAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGG--EEVLEKVPTMSLPYDQPGSAFTLVEFP  705 (865)
T ss_pred             cceeccccceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCC--ceeeeeccccCCCCCCCcceEEEEEcC
Confidence            999999999999999999999999999999999999999999999987654  888888999999999999999988887


Q ss_pred             CC--CCcccccceeEEEEEeecCCCCCCCCCCCccceeeccceecccCCccccccccchHHHhhhcCCCceeEEEEeCCC
Q 002900          707 EG--VPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGP  784 (869)
Q Consensus       707 ~~--~~~~~~f~~~l~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~W~~l~~~~e~~~~~~l~~  784 (869)
                      .+  ..++++|+|+|+|++++|||+||+|+++||+|||.|||++++++|||+|+..++|...|++++  .|.+++|.++.
T Consensus       706 ~~~p~~v~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~aawde~~--~e~eetF~Ls~  783 (865)
T KOG1078|consen  706 KDDPWAIAEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFPAAWDELG--FEAEETFNLST  783 (865)
T ss_pred             CCCchhhhccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccchhhHHhcC--cchheeeeccc
Confidence            53  247889999999999999999999999999999999999999999999999999999999997  77889999998


Q ss_pred             CCCHHHHHHHHHHHhCCeecCCcccccCCCcceeEEEEEEEecCcEEEEEEEeeccCCCeeEEEEEEecCCcchHHHHHH
Q 002900          785 RESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHE  864 (869)
Q Consensus       785 ~~~~~~a~~~i~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~vlv~~~~~~~~~~~~~~~~~vRs~~~~v~~~l~~  864 (869)
                      .+++++|+++|++.+||+||++++.+|++++.|+++++|+|+||++||++++++.+.+ |++++|+|||+++.+++.+.+
T Consensus       784 ~~tl~eAv~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~frgG~~vlvr~~ma~s~~-~vtm~Vtvrs~e~~~vd~Iva  862 (865)
T KOG1078|consen  784 VKSIQEAVKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFRGGYKVLVRAKMALSSG-GITMKVTVRSEDELVVDLIVA  862 (865)
T ss_pred             cchHHHHHHHHHHHhCCccccccccCCCCCCceEEEEeeeeeCCceEEEeeeeeecCC-CcEEEEEEecCCccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998864 599999999999999999998


Q ss_pred             HHh
Q 002900          865 IVA  867 (869)
Q Consensus       865 ~l~  867 (869)
                      .+|
T Consensus       863 ~v~  865 (865)
T KOG1078|consen  863 LVG  865 (865)
T ss_pred             hcC
Confidence            875

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform Back     alignment and domain information
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query869
3tjz_B355 Crystal Structure Of Arf1 Bound To The GammaZETA-Co 1e-96
1pzd_A322 Structural Identification Of A Conserved Appendage 2e-54
1r4x_A275 Crystal Structure Analys Of The Gamma-Copi Appendag 7e-49
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 5e-06
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 6e-06
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 2e-04
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  351 bits (901), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/356 (52%), Positives = 250/356 (70%), Gaps = 21/356 (5%)
Query: 5   LVKKDDDRDDEAE--YSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGET 62
           ++KK D +D+E+    +PF  +EK AVLQEARVFN+  ++PR+C+ ++TK+LYL+NQGE 
Sbjct: 1   MLKKFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEH 60
Query: 63  FTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMY 122
               EATE FFA+TKLFQS D  LRRM YL IKE+S  A++VIIVTSSL KDMT K D Y
Sbjct: 61  LGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSY 120
Query: 123 RANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNE 182
           R  A+R LC+ITD T+L  IERY+KQAIVDK P V+S+ALVS +HLL+ + ++VKRW NE
Sbjct: 121 RGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180
Query: 183 VQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVI 242
            QEA  S   +VQ+HAL LL+ +R+NDRLAVSK+++  TR  ++SP A C++IR  ++ +
Sbjct: 181 AQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240
Query: 243 REAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSS 302
            +   ++  D P +DF+ESCLR+K EMV++EAA AI  L G + +EL PA++VLQLF SS
Sbjct: 241 EDEDGSR--DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSS 298
Query: 303 SKPVLRFAAVRTLNK-----------------SLISDQNRSXXXXXXXXXXKTGNE 341
            K  LR+AAVRTLNK                 +L++D NRS          KTG+E
Sbjct: 299 PKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain In The Carboxyl-terminus Of The Copi Gamma-subunit Length = 322 Back     alignment and structure
>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage Domain Length = 275 Back     alignment and structure
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query869
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 1e-121
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 1e-117
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 1e-105
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 4e-98
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 4e-38
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 5e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 6e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 9e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 6e-04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-04
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 6e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 7e-04
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Length = 322 Back     alignment and structure
 Score =  368 bits (946), Expect = e-121
 Identities = 131/326 (40%), Positives = 195/326 (59%), Gaps = 11/326 (3%)

Query: 547 LANIETSLKNY--EPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDA 604
           +  +E +L+ Y  EP+E+PFD+ SVP    T PLAE++           P     +  + 
Sbjct: 3   IPGLERALQQYTLEPSEKPFDLKSVPLA--TAPLAEQRTESTPVTAAKQPEKVAATRQEI 60

Query: 605 YEKLLSSIPEFSDFGKLFKSSA-PVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQ 663
           +++ L+++PEF   G LFKSS  PV LTE+ETEY +   KH F  H+VFQ++CTNT+ +Q
Sbjct: 61  FQEQLAAVPEFQGLGPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQ 120

Query: 664 LLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPA--VGKFSNMLRF 721
            LENVTV ++ SEA E   +   P RSLPY+ PG  +     P+  P      FS +++F
Sbjct: 121 TLENVTVQMEPSEAYE--VLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKF 178

Query: 722 IVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYG 781
            VK+ DPTTG+ +D+G EDEY LEDLEV  AD++ KV   NF  AW+ +G +F++ + + 
Sbjct: 179 TVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFT 238

Query: 782 LGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDG 841
           L   ++L EAV  ++  LGM PCE ++ V +N  +HT LL+GVF G   +LVR +  +  
Sbjct: 239 LSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLL- 297

Query: 842 PKEVAMKLAVRSEDDNVSDMIHEIVA 867
              V M++  RS ++   D++   V 
Sbjct: 298 -DTVTMQVTARSSEELPVDIVLASVG 322
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Length = 275 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query869
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 100.0
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 100.0
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 99.9
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 99.86
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.6
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.49
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.43
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.42
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.36
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.25
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.25
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.24
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.18
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.14
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.12
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.11
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.11
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.11
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.1
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 99.09
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.07
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.03
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.03
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.02
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.97
1qgr_A876 Protein (importin beta subunit); transport recepto 98.96
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.96
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.96
1qgr_A876 Protein (importin beta subunit); transport recepto 98.94
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.93
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.92
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.91
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.87
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.87
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.84
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.81
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.81
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.79
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.72
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.59
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.56
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.56
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.55
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.54
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.42
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.41
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.35
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.26
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.24
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.13
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.12
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.92
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.89
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.87
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.83
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.82
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.82
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.72
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.72
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.72
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.64
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.61
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.58
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.53
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.51
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.5
2x19_B963 Importin-13; nuclear transport, protein transport; 97.49
3nmz_A458 APC variant protein; protein-protein complex, arma 97.4
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.27
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.93
3nmz_A458 APC variant protein; protein-protein complex, arma 96.89
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.82
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.79
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.76
2x1g_F971 Cadmus; transport protein, developmental protein, 96.76
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.56
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.54
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.52
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.39
3grl_A651 General vesicular transport factor P115; vesicle t 96.22
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.85
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 95.31
2x19_B963 Importin-13; nuclear transport, protein transport; 95.18
2x1g_F971 Cadmus; transport protein, developmental protein, 95.04
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 95.01
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 94.66
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 94.33
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 94.26
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 94.09
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 93.89
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 93.36
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 93.31
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 92.34
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 91.47
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 91.37
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 91.26
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 91.24
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 91.0
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 90.59
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 89.87
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 89.27
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 88.99
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 88.63
3grl_A651 General vesicular transport factor P115; vesicle t 86.92
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 86.75
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 84.77
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 84.7
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 82.58
2xzz_A102 Protein-glutamine gamma-glutamyltransferase K; 2.3 80.94
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 80.73
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
Probab=100.00  E-value=3.8e-78  Score=720.39  Aligned_cols=513  Identities=18%  Similarity=0.259  Sum_probs=449.6

Q ss_pred             hHHHHHh-hhc-CCCCCHHHHHHHHHHHHHHHhcCCCCCccchhhhhHHHHHhhcCCCccchhHHHHHHHHhCCC-cchh
Q 002900           28 AVLQEAR-VFN-DPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPS-ADEV  104 (869)
Q Consensus        28 ~~~qe~r-~f~-~~~~~~~k~~~~l~kli~l~~~G~~~~~~e~s~lf~~v~kl~~s~d~~lKrl~Yl~l~~~~~~-~d~~  104 (869)
                      .+++|+| .|+ +++.+.++|+++|+|+||++++|+     |++++||.++|+++|+|+++||+||||+..+++. +|++
T Consensus        35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~-----d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~  109 (621)
T 2vgl_A           35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH-----DIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI  109 (621)
T ss_dssp             HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSC-----CCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----CCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH
Confidence            3567888 898 567899999999999999999999     9999999999999999999999999999999987 7889


Q ss_pred             HhhhhHHHhhcCCCCHHHHhHHHHHhccCCChhhHHHHHHHHHHHh--cCCChHHHHHHHHHHhhhcccChHHHH--HHH
Q 002900          105 IIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI--VDKNPVVASAALVSGIHLLQTTPEIVK--RWS  180 (869)
Q Consensus       105 ~Lvinsl~kDl~s~n~~vr~lALr~L~~I~~~~~~~~l~~~i~~~l--~d~~p~VRk~A~lal~~L~~~~pe~v~--~~~  180 (869)
                      +|+||+|+|||+|+||++||+|||+||+|+++++++.+.++|++++  .|++|||||+|++|++|+|+.+|+.++  .|+
T Consensus       110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~  189 (621)
T 2vgl_A          110 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT  189 (621)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence            9999999999999999999999999999999999999999999999  999999999999999999999999999  899


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHhhcChhHHHH----HHH---h-----------hccCCCCChhHHHHHHHHHHHhh
Q 002900          181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK----LVT---S-----------LTRGTVRSPLAQCLLIRYTTQVI  242 (869)
Q Consensus       181 ~~l~~~l~d~~~~v~~~al~ll~~i~~~d~~~~~~----li~---~-----------l~~~~~~~~~~~v~llr~l~~~~  242 (869)
                      +.+.++|+|+|++|+.+|+.++++++++++..+..    ++.   +           +.++..++||+|++++|++..+.
T Consensus       190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~  269 (621)
T 2vgl_A          190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP  269 (621)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred             HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence            99999999999999999999999999887654321    111   1           11222568999999999998753


Q ss_pred             hhhcCCCCCchhhHHHHHHHHh------------cCC--hHHHHHHHHHHHhccCCChHhHhhHHHHHHHHHcCCCchhH
Q 002900          243 REAATTQTGDRPFYDFLESCLR------------HKA--EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLR  308 (869)
Q Consensus       243 ~~~~~dp~~~~~l~~~l~~~L~------------~~~--~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~L~s~~~n~r  308 (869)
                      +.  .+|+..+.+++++..+++            +.|  ++|+|||+++++++.. .+..+..++..|+.||.++++|+|
T Consensus       270 ~~--~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~nir  346 (621)
T 2vgl_A          270 PP--EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLR  346 (621)
T ss_dssp             SC--SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHH
T ss_pred             CC--CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchH
Confidence            22  145556677777777663            334  4999999999999964 567788899999999999999999


Q ss_pred             HHHHHHhcc-------------------ccCC-CCCHHHHHHHHHHhhccCChhhHHHHHHHHHHhhhhccHHHHHHHHH
Q 002900          309 FAAVRTLNK-------------------SLIS-DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVE  368 (869)
Q Consensus       309 y~aL~~l~~-------------------~~L~-d~d~sI~~~aL~lL~~l~~e~nv~~Il~eL~~y~~~~~~~~r~~~v~  368 (869)
                      |+||+++.+                   .+|+ |+|++||++||++|++|+|++|++.|++||.+|+.+.|.+||.+++.
T Consensus       347 y~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~  426 (621)
T 2vgl_A          347 YLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVL  426 (621)
T ss_dssp             HHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999988765                   4567 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccCchhH-HHHHHhhhc
Q 002900          369 AIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYL-STQILHFLG  447 (869)
Q Consensus       369 aI~~la~k~~~~~~~~v~~ll~ll~~~g~~~~~~~iv~~i~~ii~~~p~~~~~~l~~L~~~l~~~~~~~~-~~~~l~ilG  447 (869)
                      +|+.||+|||++..||+++|+++++.+|++ +.+++|+++++++.++|+.|++++.+|+++++++..... ...++|++|
T Consensus       427 ~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~-v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilG  505 (621)
T 2vgl_A          427 KVAILAEKYAVDYTWYVDTILNLIRIAGDY-VSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILG  505 (621)
T ss_dssp             HHHHHHHHHCSSTHHHHHHHHHHHHHHGGG-SCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhc
Confidence            999999999999999999999999999988 678899999999999999999999999999999876643 456789999


Q ss_pred             CCCCCCCC-----hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhccccCchHHHHHHHHHhhc--CCCHHHHHHHHHHHH
Q 002900          448 TEGPKTSD-----PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLY--DGDDEVRDRATLYLN  520 (869)
Q Consensus       448 E~~~~~~~-----~~~~l~~i~~~~~~e~~~vr~~~ltal~Kl~~~~~~l~~~i~~ll~~~~~--d~d~evrdRA~~yl~  520 (869)
                      |||+...+     |.++++.+++++..+++.||+++|+|++|++.++|++++.+..+|+.+.+  |.|+||||||++|++
T Consensus       506 Ey~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~  585 (621)
T 2vgl_A          506 EFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLR  585 (621)
T ss_dssp             HHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred             chHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            99986544     67999999999999999999999999999999999999999999999998  999999999999999


Q ss_pred             HhCCCCCCCcchhhhhhhhcCCCCCC--hHHHHHHH
Q 002900          521 TVGSDGEVIETDKDVKDFLFGSLDIP--LANIETSL  554 (869)
Q Consensus       521 ll~~~~~~~~~~~~~~~~l~~~~~~~--~~~l~~~l  554 (869)
                      |++.++     ++....++.++|+++  .+.|..+|
T Consensus       586 Ll~~~~-----~~~~~~vl~~~P~~~~~~~~ll~~l  616 (621)
T 2vgl_A          586 LSTVAS-----TDILATVLEEMPPFPERESSILAKL  616 (621)
T ss_dssp             HHHSSC-----STTTTTTSSSCCCCCCC--------
T ss_pred             HHccCH-----HHHHHHHhhcCCCCCCcchHHHHHH
Confidence            998653     245556667788776  34444443
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 869
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 2e-67
d1r4xa1163 b.1.10.3 (A:600-762) Coatomer gamma subunit C-term 4e-67
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-54
d1r4xa2111 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-te 4e-43
d1kyfa2114 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal 2e-13
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-08
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.003
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 163 Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query869
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1r4xa1163 Coatomer gamma subunit C-terminal domain, first su 100.0
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 99.9
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 99.74
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.56
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.4
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.34
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.97
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.95
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.77
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.72
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.59
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.59
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.52
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.52
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.5
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.42
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.41
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.37
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.28
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.26
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.23
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.11
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.08
d1e42a2113 Beta2-adaptin AP2, C-terminal subdomain {Human (Ho 97.87
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.85
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.78
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.67
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.46
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 97.29
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.05
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.65
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.59
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 95.7
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.42
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 95.35
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 92.76
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.95
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 87.48
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 85.92
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure