Citrus Sinensis ID: 002903

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------87

MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG

cccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHcHHHHHHHHHccHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccc

cccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHcccccEcccHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccHHHHcHEEEHccccHHHHHHHHHHHHHccccccccEcccHccHHHHHHHHHHHHHHHccHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHccccccccccEEEEcccHEEEEccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHEHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccHHHccccccccHHHHHHccccccccccHHHHHHHHHHHHHHcccccc

MLNLANLAEELQIAHRRRIKKlkkgdfadensatteSDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLyakditpddKQELDEALQREIQAAFRtdeirrtqptpqdemragmsyFHETIWKGVPKFLRRVDTALKniginervpynapliqfsswmggdrdgnprvtpevTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWkqippnepyrvILGDVRDKLYQTRERVRQLLAHgisdipeeavFTNVEQFLEPLELCYRSLcscgdraiadGSLLDFLRQVSTFGLSLVRLdirqesdrhTDVIDAITKHLeigsyrewSEEKRQEWLLSElsgkrplfgpdlpktEEIADVLETFHVIaelpadnfgaYIISMATAPSDVLAVELLQRechvkqplrvvplfEKLADLEAAPAALARLFSVdwyrnringkqeVMIGysdsgkdaGRFSAAWQLYKAQEELIKVAKQYGIKLTmfhgrggtvgrgggpthlailsqppdtihgslrvTVQGEVIEQSFGEEHLCFRTLQRFTAAtlehgmrppispkpewrTMMDEMAVIATEEYRsivfkeprfveyfrlatpeleygrmnigsrpskrkpsggieslrAIPWIFAwtqtrfhlpvwlgFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGhkdllegdpyLKQRLRLRDAYITTLNVCQAYtlkrirdpnyhvkvrphisreimesesvkpaDELVKLNlsseyapgledTLILTMKGIAAGLQNTG

MLNLANLAEELQIAHRrrikklkkgdfadensattesdieeTFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIqaafrtdeirrtqptpqdemraGMSYFHETIWKGVPKFLRRVDTALKniginervpynAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEfwkqippnepyrvILGDVRDKLYQTRERVRQLLAhgisdipeeAVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRldirqesdrhtdvIDAITKhleigsyrewsEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTaatlehgmrppispkpewrTMMDEMAVIATEEYRSIVFKEPRFVEYFRlatpeleygrmnigsrpskrkpsggiESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQaytlkrirdpnyhvKVRPHisreimesesvkpADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG

MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKladleaapaalarlFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHgrggtvgrgggPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG

*******************************************************EIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDI***************************************MSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHG**********WRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGR***************IESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHI****************VKLNLSSEYAPGLEDTLILTMKGIA*******

MLNLANLAEELQIAHRRRI******************DIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAH**SDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHG*********EWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIG***************RAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDP*************************LVKLNLSSEYAPGLEDTLILTMKGIAAGLQNT*

MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIG**********GIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG

MLNLANLAEELQIAHRRRIKKLKK******NSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSK**PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDP********HISR**M*SESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGL****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		868	2.2.26 [Sep-21-2011]
Q02909		967	Phosphoenolpyruvate carbo	yes	no	0.996	0.894	0.902	0.0
Q9FV65		967	Phosphoenolpyruvate carbo	N/A	no	0.997	0.895	0.897	0.0
Q9MAH0		967	Phosphoenolpyruvate carbo	yes	no	0.997	0.895	0.890	0.0
P16097		960	Phosphoenolpyruvate carbo	N/A	no	1.0	0.904	0.883	0.0
Q84VW9		968	Phosphoenolpyruvate carbo	no	no	0.997	0.894	0.887	0.0
P29194		960	Phosphoenolpyruvate carbo	N/A	no	0.996	0.901	0.897	0.0
P51059		967	Phosphoenolpyruvate carbo	N/A	no	0.996	0.894	0.890	0.0
Q9FV66		965	Phosphoenolpyruvate carbo	N/A	no	0.996	0.896	0.884	0.0
Q01647		967	Phosphoenolpyruvate carbo	N/A	no	0.997	0.895	0.881	0.0
P51061		967	Phosphoenolpyruvate carbo	no	no	0.996	0.894	0.880	0.0

>sp\|Q02909\|CAPP1_SOYBN Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Glycine max GN=PPC16 PE=2 SV=1	Back alignment and function desciption

 Score = 1610 bits (4169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/870 (90%), Positives = 830/870 (95%), Gaps = 5/870 (0%)

Query: 1   MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
           MLNLANLAEE+QIAH RR  KLKKGDFADEN+ATTESDIEET K+LV ++ KSP+E+FDA
Sbjct: 101 MLNLANLAEEVQIAHSRR-NKLKKGDFADENNATTESDIEETLKKLVVDMKKSPQEVFDA 159

Query: 61  LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
           LKNQTVDLVLTAHPTQSVRRSLLQKH RIRN L QLYAKDITPDDKQELDEALQREIQAA
Sbjct: 160 LKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNNLTQLYAKDITPDDKQELDEALQREIQAA 219

Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
           FRTDEIRRT PTPQDEMRAGMSYFHETIWKGVP FLRRVDTALKNIGINERVPYNAPLIQ
Sbjct: 220 FRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNIGINERVPYNAPLIQ 279

Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
           FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFE+SMWRC+DELR RAD
Sbjct: 280 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRAD 339

Query: 241 VLHRSSKKD--AKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEE 298
            L+RSSKK+  AKHYIEFWK IPPNEPYRV+LG+VR++LYQTRER R LLAHG SDIPEE
Sbjct: 340 ELNRSSKKNSVAKHYIEFWKAIPPNEPYRVLLGEVRNRLYQTRERSRHLLAHGYSDIPEE 399

Query: 299 AVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHT 358
             FTNVE+FLEPLELCYRSLC+CGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHT
Sbjct: 400 ETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHT 459

Query: 359 DVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAE 418
           DV+DAITKHLEIGSY+EWSEEKRQ+WLLSELSGKRPLFGPDLP+TEEI DVLETFHVIAE
Sbjct: 460 DVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGPDLPQTEEIRDVLETFHVIAE 519

Query: 419 LPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFS 478
           LP DNFGAYIISMATAPSDVLAVELLQRECHVK PLRVVPLFEKLADLEAAPAALARLFS
Sbjct: 520 LPLDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFS 579

Query: 479 VDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGG 538
           VDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELI VAKQYG+KLTMFHGRGG
Sbjct: 580 VDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIMVAKQYGVKLTMFHGRGG 639

Query: 539 TVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGM 598
           TVGRGGGPTHLAILSQPP+TIHGSLRVTVQGEVIEQSFGE+HLCFRTLQRFTAATLEHGM
Sbjct: 640 TVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGM 699

Query: 599 RPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKR 658
            PPISPKPEWR +MDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRP+KR
Sbjct: 700 HPPISPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKR 759

Query: 659 KPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFR 718
           +PSGGIE+LRAIPWIFAWTQTRFHLPVWLGFGAAFKHVI+KD+RN+H+LQEMYN WPFFR
Sbjct: 760 RPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDVRNIHVLQEMYNQWPFFR 819

Query: 719 VTIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEG 778
           VTIDLVEMVFAKG+  IAALYD+LLVS+DLWSFGE+LR  YEETK LLLQ+AGH+DLLEG
Sbjct: 820 VTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTMYEETKELLLQVAGHRDLLEG 879

Query: 779 DPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVK 838
           DPYLKQRLRLRD+YITTLNVCQAYTLKRIRDPNY+VK+RPHIS+E +E    KPADEL+ 
Sbjct: 880 DPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEIS--KPADELIT 937

Query: 839 LNLSSEYAPGLEDTLILTMKGIAAGLQNTG 868
           LN +SEYAPGLEDTLILTMKGIAAGLQNTG
Sbjct: 938 LNPTSEYAPGLEDTLILTMKGIAAGLQNTG 967

Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
Glycine max (taxid: 3847)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1

>sp\|Q9FV65\|CAPPC_FLATR Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1	Back alignment and function description

>sp\|Q9MAH0\|CAPP1_ARATH Phosphoenolpyruvate carboxylase 1 OS=Arabidopsis thaliana GN=PPC1 PE=1 SV=1	Back alignment and function description

>sp\|P16097\|CAPP2_MESCR Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthemum crystallinum GN=PPC2 PE=3 SV=1	Back alignment and function description

>sp\|Q84VW9\|CAPP3_ARATH Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana GN=PPC3 PE=2 SV=2	Back alignment and function description

>sp\|P29194\|CAPP2_SORBI Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor PE=3 SV=1	Back alignment and function description

>sp\|P51059\|CAPP2_MAIZE Phosphoenolpyruvate carboxylase 2 OS=Zea mays GN=PEP4 PE=2 SV=1	Back alignment and function description

>sp\|Q9FV66\|CAPPB_FLATR Phosphoenolpyruvate carboxylase 1 OS=Flaveria trinervia GN=PPCB PE=1 SV=1	Back alignment and function description

>sp\|Q01647\|CAPP1_FLAPR Phosphoenolpyruvate carboxylase OS=Flaveria pringlei GN=PPCA1 PE=2 SV=1	Back alignment and function description

>sp\|P51061\|CAPP2_SOYBN Phosphoenolpyruvate carboxylase OS=Glycine max GN=PPC1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		868
325301870		868	phosphoenolpyruvate carboxylase [Citrus	1.0	1.0	0.996	0.0
259506726		967	phosphoenolpyruvate carboxylase [Citrus	0.997	0.895	0.958	0.0
255579064		965	Phosphoenolpyruvate carboxylase, putativ	0.996	0.896	0.927	0.0
149789409		965	phosphoenolpyruvate carboxylase [Ricinus	0.996	0.896	0.923	0.0
224121514		957	predicted protein [Populus trichocarpa]	0.996	0.903	0.923	0.0
449456583		965	PREDICTED: phosphoenolpyruvate carboxyla	0.996	0.896	0.913	0.0
224114804		966	predicted protein [Populus trichocarpa]	0.996	0.895	0.919	0.0
157812633		971	phosphoenolpyruvate carboxylase [Gossypi	0.996	0.890	0.917	0.0
2266947		965	phosphoenolpyruvate carboxylase 1 [Gossy	0.996	0.896	0.910	0.0
255553993		965	Phosphoenolpyruvate carboxylase, putativ	0.996	0.896	0.914	0.0

>gi\|325301870\|gb\|ADZ05827.1\| phosphoenolpyruvate carboxylase [Citrus maxima]	Back alignment and taxonomy information

 Score = 1793 bits (4643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 865/868 (99%), Positives = 866/868 (99%)

Query: 1   MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
           MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA
Sbjct: 1   MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60

Query: 61  LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
           LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA
Sbjct: 61  LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120

Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
           FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ
Sbjct: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180

Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
           FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD
Sbjct: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240

Query: 241 VLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAV 300
           VLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAV
Sbjct: 241 VLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAV 300

Query: 301 FTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDV 360
           FTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDV
Sbjct: 301 FTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDV 360

Query: 361 IDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELP 420
           IDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELP
Sbjct: 361 IDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELP 420

Query: 421 ADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVD 480
           ADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVD
Sbjct: 421 ADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSVD 480

Query: 481 WYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTV 540
           WYRNRINGKQEVMIGYSDSGKDAGRFSAA QLYKAQEELIKVAKQYGIKLTMFHGRGGTV
Sbjct: 481 WYRNRINGKQEVMIGYSDSGKDAGRFSAAGQLYKAQEELIKVAKQYGIKLTMFHGRGGTV 540

Query: 541 GRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRP 600
           GRGGGPTHLAIL QPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLE+GMRP
Sbjct: 541 GRGGGPTHLAILPQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEYGMRP 600

Query: 601 PISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 660
           PISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP
Sbjct: 601 PISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 660

Query: 661 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT 720
           SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT
Sbjct: 661 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT 720

Query: 721 IDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDP 780
           IDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDP
Sbjct: 721 IDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDP 780

Query: 781 YLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLN 840
           YLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLN
Sbjct: 781 YLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLN 840

Query: 841 LSSEYAPGLEDTLILTMKGIAAGLQNTG 868
           LSSEYAPGLEDTLILTMKGIAAGLQNTG
Sbjct: 841 LSSEYAPGLEDTLILTMKGIAAGLQNTG 868

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|259506726\|gb\|ABK54024.2\| phosphoenolpyruvate carboxylase [Citrus sinensis]	Back alignment and taxonomy information

>gi\|255579064\|ref\|XP_002530381.1\| Phosphoenolpyruvate carboxylase, putative [Ricinus communis] gi\|223530082\|gb\|EEF32001.1\| Phosphoenolpyruvate carboxylase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|149789409\|gb\|ABR29876.1\| phosphoenolpyruvate carboxylase [Ricinus communis]	Back alignment and taxonomy information

>gi\|224121514\|ref\|XP_002330719.1\| predicted protein [Populus trichocarpa] gi\|222872495\|gb\|EEF09626.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449456583\|ref\|XP_004146028.1\| PREDICTED: phosphoenolpyruvate carboxylase, housekeeping isozyme-like [Cucumis sativus] gi\|449516750\|ref\|XP_004165409.1\| PREDICTED: phosphoenolpyruvate carboxylase, housekeeping isozyme-like [Cucumis sativus] gi\|406353249\|gb\|AFS33790.1\| phosphoenolpyruvate carboxylase protein [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224114804\|ref\|XP_002316861.1\| predicted protein [Populus trichocarpa] gi\|222859926\|gb\|EEE97473.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|157812633\|gb\|ABV80356.1\| phosphoenolpyruvate carboxylase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|2266947\|gb\|AAB80714.1\| phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|255553993\|ref\|XP_002518037.1\| Phosphoenolpyruvate carboxylase, putative [Ricinus communis] gi\|223543019\|gb\|EEF44555.1\| Phosphoenolpyruvate carboxylase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		868
UNIPROTKB\|Q9FV65		967	PPCC "Phosphoenolpyruvate carb	0.997	0.895	0.869	0.0
TAIR\|locus:2009600		967	PPC1 "phosphoenolpyruvate carb	0.997	0.895	0.863	0.0
TAIR\|locus:2086315		968	PPC3 "phosphoenolpyruvate carb	0.997	0.894	0.859	0.0
UNIPROTKB\|Q9FV66		965	PPCB "Phosphoenolpyruvate carb	0.996	0.896	0.857	0.0
TAIR\|locus:2041529		963	PPC2 "phosphoenolpyruvate carb	0.994	0.896	0.842	0.0
UNIPROTKB\|P30694		966	PPCA "C4 phosphoenolpyruvate c	0.997	0.896	0.831	0.0
TAIR\|locus:2012448		1032	PPC4 "phosphoenolpyruvate carb	0.633	0.532	0.466	5.5e-182
UNIPROTKB\|P00864		883	ppc "Ppc" [Escherichia coli K-	0.623	0.612	0.452	1.2e-165
DICTYBASE\|DDB_G0287723		931	DDB_G0287723 "Phosphoenolpyruv	0.911	0.849	0.389	1.8e-161
UNIPROTKB\|Q9KNT4		876	ppc "Phosphoenolpyruvate carbo	0.624	0.618	0.443	3.7e-159

UNIPROTKB\|Q9FV65 PPCC "Phosphoenolpyruvate carboxylase 2" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

 Score = 3962 (1399.8 bits), Expect = 0., P = 0.
 Identities = 756/869 (86%), Positives = 799/869 (91%)

Query:     1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
             MLNLANLAEE+QIA+RRRIK LKKGDFADE SATTESDIEETFK+LV +L KSPEE+FDA
Sbjct:   101 MLNLANLAEEVQIAYRRRIK-LKKGDFADEASATTESDIEETFKKLVHKLKKSPEEVFDA 159

Query:    61 LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
             LKNQTVDLV TAHPTQSVRRSLLQKH RIR+CLAQLYAKDITPDDKQELDEAL REIQAA
Sbjct:   160 LKNQTVDLVFTAHPTQSVRRSLLQKHGRIRDCLAQLYAKDITPDDKQELDEALHREIQAA 219

Query:   121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
             FRTDEIRRT PTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ
Sbjct:   220 FRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 279

Query:   181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
             FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAAN+Y+SQIEDLMFEMSMWRCSDELR RA+
Sbjct:   280 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCSDELRVRAE 339

Query:   241 VLHRSS-KKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEA 299
              LHRSS K+D KHYIEFWKQ+PP EPYRVILGDVRDKLY TRER R LLAH +SDIPEE+
Sbjct:   340 ELHRSSSKRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERARHLLAHDVSDIPEES 399

Query:   300 VFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTD 359
             V+TNVEQFLEPLELCYRSLC+CGDR IADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTD
Sbjct:   400 VYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTD 459

Query:   360 VIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAEL 419
             V+DAIT+HLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVL+TFHV+AEL
Sbjct:   460 VLDAITQHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLDTFHVLAEL 519

Query:   420 PADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSV 479
             PAD FGAYIISMAT+PSDVLAVELLQRECHVKQPLRVVPLFEK              FS+
Sbjct:   520 PADCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSI 579

Query:   480 DWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXX 539
             +WY+NRI+GKQEVMIGYSDSGKDAGR SAAWQLYKAQEELI VAK++G+KLTMFH     
Sbjct:   580 EWYKNRIDGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELINVAKKFGVKLTMFHGRGGT 639

Query:   540 XXXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMR 599
                   PTHLAILSQPP+TIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM 
Sbjct:   640 VGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMN 699

Query:   600 PPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRK 659
             PPISP+PEWR +MDEMAV ATE+YR IVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRK
Sbjct:   700 PPISPRPEWRALMDEMAVYATEQYREIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRK 759

Query:   660 PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRV 719
             PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFK+ I+KDI+NLHMLQEMY  WPFFRV
Sbjct:   760 PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKYAIEKDIKNLHMLQEMYKTWPFFRV 819

Query:   720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGD 779
             TIDLVEMVFAKG+  IAAL D+LLVS+DLWSFGE LR NYEETK LLL+IAGHKDLLEGD
Sbjct:   820 TIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKNLLLKIAGHKDLLEGD 879

Query:   780 PYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKL 839
             PYL+QRLRLRD+YITTLNVCQAYTLKRIRDPNYHV  RPHIS+E  E  S KPADE +KL
Sbjct:   880 PYLRQRLRLRDSYITTLNVCQAYTLKRIRDPNYHVTFRPHISKEYSEPSS-KPADEYIKL 938

Query:   840 NLSSEYAPGLEDTLILTMKGIAAGLQNTG 868
             N  SEYAPGLEDTLILTMKGIAAG+QNTG
Sbjct:   939 NPKSEYAPGLEDTLILTMKGIAAGMQNTG 967

GO:0008964 "phosphoenolpyruvate carboxylase activity" evidence=IDA

GO:0015977 "carbon fixation" evidence=IDA

TAIR\|locus:2009600 PPC1 "phosphoenolpyruvate carboxylase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2086315 PPC3 "phosphoenolpyruvate carboxylase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9FV66 PPCB "Phosphoenolpyruvate carboxylase 1" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

TAIR\|locus:2041529 PPC2 "phosphoenolpyruvate carboxylase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P30694 PPCA "C4 phosphoenolpyruvate carboxylase" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

TAIR\|locus:2012448 PPC4 "phosphoenolpyruvate carboxylase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P00864 ppc "Ppc" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287723 DDB_G0287723 "Phosphoenolpyruvate carboxylase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KNT4 ppc "Phosphoenolpyruvate carboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6VUQ5	CAPP_MARMS	4, ., 1, ., 1, ., 3, 1	0.4106	0.9216	0.9132	yes	no
A3MA94	CAPP_ACIBT	4, ., 1, ., 1, ., 3, 1	0.4127	0.9297	0.9026	yes	no
B4F183	CAPP_PROMH	4, ., 1, ., 1, ., 3, 1	0.4303	0.8801	0.8701	yes	no
Q6LVH1	CAPP_PHOPR	4, ., 1, ., 1, ., 3, 1	0.4100	0.9124	0.9041	yes	no
P27154	CAPP_TOBAC	4, ., 1, ., 1, ., 3, 1	0.8859	0.9953	0.8962	N/A	no
P10490	CAPP1_MESCR	4, ., 1, ., 1, ., 3, 1	0.8294	0.9976	0.8964	N/A	no
Q1R3V5	CAPP_ECOUT	4, ., 1, ., 1, ., 3, 1	0.4188	0.9251	0.9093	yes	no
Q9AU12	CAPP_PHAVU	4, ., 1, ., 1, ., 3, 1	0.8737	0.9965	0.8935	N/A	no
Q02735	CAPP_MEDSA	4, ., 1, ., 1, ., 3, 1	0.8758	0.9965	0.8954	N/A	no
A1AID4	CAPP_ECOK1	4, ., 1, ., 1, ., 3, 1	0.4188	0.9251	0.9093	yes	no
Q5E2E3	CAPP_VIBF1	4, ., 1, ., 1, ., 3, 1	0.4094	0.9193	0.9109	yes	no
B5FBP8	CAPP_VIBFM	4, ., 1, ., 1, ., 3, 1	0.4106	0.9193	0.9109	yes	no
B5XZ20	CAPP_KLEP3	4, ., 1, ., 1, ., 3, 1	0.4131	0.9251	0.9093	yes	no
Q5GM68	CAPP2_ARATH	4, ., 1, ., 1, ., 3, 1	0.8686	0.9942	0.8961	no	no
P29193	CAPP1_SACHY	4, ., 1, ., 1, ., 3, 1	0.8745	0.9965	0.8954	N/A	no
P29195	CAPP1_SORBI	4, ., 1, ., 1, ., 3, 1	0.8642	0.9942	0.8989	N/A	no
P29194	CAPP2_SORBI	4, ., 1, ., 1, ., 3, 1	0.8974	0.9965	0.9010	N/A	no
Q6DAR6	CAPP_ERWCT	4, ., 1, ., 1, ., 3, 1	0.4301	0.9020	0.8907	yes	no
P29196	CAPP_SOLTU	4, ., 1, ., 1, ., 3, 1	0.8894	0.9965	0.8963	N/A	no
C6DI86	CAPP_PECCP	4, ., 1, ., 1, ., 3, 1	0.4277	0.9020	0.8907	yes	no
P16097	CAPP2_MESCR	4, ., 1, ., 1, ., 3, 1	0.8836	1.0	0.9041	N/A	no
Q6F6Q6	CAPP_ACIAD	4, ., 1, ., 1, ., 3, 1	0.4243	0.9274	0.9004	yes	no
Q9FV66	CAPPB_FLATR	4, ., 1, ., 1, ., 3, 1	0.8847	0.9965	0.8963	N/A	no
Q9FV65	CAPPC_FLATR	4, ., 1, ., 1, ., 3, 1	0.8975	0.9976	0.8955	N/A	no
B7MI92	CAPP_ECO45	4, ., 1, ., 1, ., 3, 1	0.4188	0.9251	0.9093	yes	no
B6EMN4	CAPP_ALISL	4, ., 1, ., 1, ., 3, 1	0.4094	0.9193	0.9109	yes	no
Q01647	CAPP1_FLAPR	4, ., 1, ., 1, ., 3, 1	0.8814	0.9976	0.8955	N/A	no
Q9HXV3	CAPP_PSEAE	4, ., 1, ., 1, ., 3, 1	0.4297	0.9205	0.9100	yes	no
A6V1A0	CAPP_PSEA7	4, ., 1, ., 1, ., 3, 1	0.4285	0.9205	0.9100	yes	no
Q02909	CAPP1_SOYBN	4, ., 1, ., 1, ., 3, 1	0.9022	0.9965	0.8945	yes	no
P15804	CAPP3_SORBI	4, ., 1, ., 1, ., 3, 1	0.7678	0.9942	0.8989	N/A	no
P51062	CAPP_PEA	4, ., 1, ., 1, ., 3, 1	0.8691	0.9965	0.8945	N/A	no
P51063	CAPP_PICAB	4, ., 1, ., 1, ., 3, 1	0.8744	0.9942	0.8961	N/A	no
P51061	CAPP2_SOYBN	4, ., 1, ., 1, ., 3, 1	0.8804	0.9965	0.8945	no	no
A4SIM0	CAPP_AERS4	4, ., 1, ., 1, ., 3, 1	0.4205	0.9193	0.9099	yes	no
Q43299	CAPP_AMAHP	4, ., 1, ., 1, ., 3, 1	0.8087	0.9953	0.8962	N/A	no
Q9MAH0	CAPP1_ARATH	4, ., 1, ., 1, ., 3, 1	0.8906	0.9976	0.8955	yes	no
A4XXP6	CAPP_PSEMY	4, ., 1, ., 1, ., 3, 1	0.4348	0.9216	0.9111	yes	no
A1U2U4	CAPP_MARAV	4, ., 1, ., 1, ., 3, 1	0.4303	0.9228	0.9091	yes	no
Q84VW9	CAPP3_ARATH	4, ., 1, ., 1, ., 3, 1	0.8873	0.9976	0.8946	no	no
Q9KNT4	CAPP_VIBCH	4, ., 1, ., 1, ., 3, 1	0.4105	0.9135	0.9052	yes	no
P04711	CAPP1_MAIZE	4, ., 1, ., 1, ., 3, 1	0.7963	0.9965	0.8917	N/A	no
B7LUN9	CAPP_ESCF3	4, ., 1, ., 1, ., 3, 1	0.4147	0.9262	0.9105	yes	no
A0KFU8	CAPP_AERHH	4, ., 1, ., 1, ., 3, 1	0.4216	0.9193	0.9099	yes	no
C4L7S3	CAPP_TOLAT	4, ., 1, ., 1, ., 3, 1	0.4257	0.9182	0.9087	yes	no
P30694	CAPPA_FLATR	4, ., 1, ., 1, ., 3, 1	0.8582	0.9976	0.8964	N/A	no
P51059	CAPP2_MAIZE	4, ., 1, ., 1, ., 3, 1	0.8905	0.9965	0.8945	N/A	no
B7MR83	CAPP_ECO81	4, ., 1, ., 1, ., 3, 1	0.4177	0.9251	0.9093	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1.31	0.994
3rd Layer	4.1.1	0.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_1460016	hypothetical protein (957 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00100246	hypothetical protein (879 aa)	•	•	0.932
	gw1.XII.1350.1	hypothetical protein (612 aa)	•		0.902
	fgenesh4_pm.C_LG_XIII000262	pyruvate kinase (EC-2.7.1.40) (500 aa)	•	•	0.900
	fgenesh4_pm.C_LG_I000007	pyruvate kinase (EC-2.7.1.40) (493 aa)	•	•	0.900
	estExt_fgenesh4_pg.C_LG_III1798	pyruvate kinase (EC-2.7.1.40) (495 aa)	•	•	0.900
	grail3.0106001101	pyruvate kinase (EC-2.7.1.40) (513 aa)	•	•	0.900
	gw1.IX.2629.1	pyruvate kinase (EC-2.7.1.40) (481 aa)	•		0.899
	gw1.I.4193.1	pyruvate kinase (EC-2.7.1.40) (481 aa)	•		0.899
	gw1.8105.3.1	annotation not avaliable (106 aa)	•		0.899
	gw1.4745.2.1	annotation not avaliable (67 aa)	•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		868
pfam00311		794	pfam00311, PEPcase, Phosphoenolpyruvate carboxylas	0.0
PRK00009		911	PRK00009, PRK00009, phosphoenolpyruvate carboxylas	0.0
PTZ00398		974	PTZ00398, PTZ00398, phosphoenolpyruvate carboxylas	0.0
COG2352		910	COG2352, Ppc, Phosphoenolpyruvate carboxylase [Ene	0.0

>gnl\|CDD\|215852 pfam00311, PEPcase, Phosphoenolpyruvate carboxylase	Back alignment and domain information

 Score = 1183 bits (3062), Expect = 0.0
 Identities = 395/826 (47%), Positives = 518/826 (62%), Gaps = 52/826 (6%)

Query: 63  NQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFR 122
              + LV TAHPT+ VRR++L K  RI   LAQL   D+TP ++QELDE L+ EI+  ++
Sbjct: 1   ELDIRLVFTAHPTEIVRRTILDKQRRIAELLAQLDDADLTPRERQELDEQLREEIRLLWQ 60

Query: 123 TDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFS 182
           TDE+R+ +PT  DE+R G+SYF ET++  +P+  RR+D ALK      R+P     ++F 
Sbjct: 61  TDELRQFKPTVLDEVRNGLSYFEETLFDALPQLYRRLDRALKESFPGLRLPLPNF-LRFG 119

Query: 183 SWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSM----WRCSDELRHR 238
           SW+GGDRDGNP VT EVT +  LL R +A  LY   +E L FE+SM       S EL   
Sbjct: 120 SWIGGDRDGNPNVTAEVTWETLLLQRELALELYLKSVEALRFELSMSLRWSDVSPELLAS 179

Query: 239 ADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEE 298
            +   R  ++  + Y E   +    EPYR+ L  +R +L  TRER+  LLA    ++P  
Sbjct: 180 LE---RDREQLPEVYEE-LAERYRQEPYRLKLAYIRARLENTRERLAALLAGR--ELPPG 233

Query: 299 AVFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHT 358
             +T+ E+ LE LEL YRSL   G   +ADG LLD +RQV  FG  L  LDIRQES RH 
Sbjct: 234 EAYTSAEELLEDLELIYRSLRETGGGLLADGRLLDLIRQVEVFGFHLATLDIRQESTRHE 293

Query: 359 DVIDAITKHLEI-GSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIA 417
           D +  IT++L + G Y E SEE+RQ WLL EL  +RPL  PDLP +EE  +VL+TF VIA
Sbjct: 294 DALAEITRYLGLPGDYAELSEEERQAWLLRELETRRPLIPPDLPFSEETREVLDTFRVIA 353

Query: 418 ELPA----DNFGAYIISMATAPSDVLAVELLQRECHVKQP------LRVVPLFEKLADLE 467
            L      +  G YIISMA   SDVL V LL +E  +  P      LRVVPLFE + DL 
Sbjct: 354 RLQQEFGPEAIGTYIISMAHTASDVLEVLLLAKEAGLLDPATGRSTLRVVPLFETIEDLR 413

Query: 468 AAPAALARLFSVDWYRNRING---KQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAK 524
            AP  + +LFS+ WYR  + G    QEVM+GYSDS KD G  ++ W+LYKAQE L+KVA+
Sbjct: 414 NAPEIMRQLFSLPWYRELLAGRGDLQEVMLGYSDSNKDGGFLTSNWELYKAQEALVKVAE 473

Query: 525 QYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFR 584
           +YG+KL +FHGRGG+VGRGGGP + AIL+QPP T++G +R+T QGEVI   +G   L  R
Sbjct: 474 KYGVKLRLFHGRGGSVGRGGGPAYEAILAQPPGTLNGRIRITEQGEVIASKYGLPELALR 533

Query: 585 TLQRFTAATLEHGMRPPISPK-PEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPE 643
            L+ +TAA LE  + PP  PK PEWR +M+E++  + + YR++V++ P FV+YFR ATP 
Sbjct: 534 NLELYTAAVLEASLLPPPPPKIPEWREIMEELSERSRKAYRALVYETPDFVDYFRQATPI 593

Query: 644 LEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRN 703
            E G++NIGSRP++RK SGGIESLRAIPW+F+WTQ+RF LP W G G A +  +QKD  N
Sbjct: 594 QEIGKLNIGSRPARRKGSGGIESLRAIPWVFSWTQSRFLLPAWYGVGTALQAFLQKDPGN 653

Query: 704 LHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDL-WSFGEKLRVNYEET 762
           L +L+EMY  WPFFR  I  VEMV AK + +IA  Y QLLV  +L     E++R  YE T
Sbjct: 654 LKLLREMYREWPFFRTLISNVEMVLAKADLQIARHYVQLLVDPELRERLFEQIRAEYELT 713

Query: 763 KGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISR 822
           + L+L+I G K+LL+ +P L++ +RLR+ YI  LN  Q   LKR+R  N         S 
Sbjct: 714 RELVLKITGQKELLDDNPVLQRSIRLRNPYIDPLNYLQVELLKRLRQAN-----EQGPST 768

Query: 823 EIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG 868
                                     L D LILT+ GIAAG++NTG
Sbjct: 769 Y--------------------SRDELLRDALILTINGIAAGMRNTG 794

Length = 794

>gnl\|CDD\|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|173589 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		868
COG2352		910	Ppc Phosphoenolpyruvate carboxylase [Energy produc	100.0
PRK00009		911	phosphoenolpyruvate carboxylase; Reviewed	100.0
PTZ00398		974	phosphoenolpyruvate carboxylase; Provisional	100.0
PF00311		794	PEPcase: Phosphoenolpyruvate carboxylase; InterPro	100.0
PRK13655		494	phosphoenolpyruvate carboxylase; Provisional	100.0
TIGR02751		506	PEPCase_arch phosphoenolpyruvate carboxylase, arch	100.0
PF14010		491	PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3	99.47
COG1892		488	Phosphoenolpyruvate carboxylase [Carbohydrate tran	98.89
PF03328		221	HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family	96.46
PRK10558		256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	95.92
TIGR03239		249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	95.44
TIGR01064		473	pyruv_kin pyruvate kinase. This enzyme is a homote	94.29
PRK09206		470	pyruvate kinase; Provisional	91.52
PRK08187		493	pyruvate kinase; Validated	91.44
PLN02623		581	pyruvate kinase	91.15
PRK05826		465	pyruvate kinase; Provisional	90.66
PTZ00300		454	pyruvate kinase; Provisional	89.79
cd00288		480	Pyruvate_Kinase Pyruvate kinase (PK): Large allost	88.86
TIGR01588		288	citE citrate lyase, beta subunit. This is a model	88.54
PRK06354		590	pyruvate kinase; Provisional	88.31
PRK06247		476	pyruvate kinase; Provisional	88.18
TIGR02311		249	HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	88.12

>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=3.8e-254  Score=2151.40  Aligned_cols=813  Identities=44%  Similarity=0.751  Sum_probs=762.5

Q ss_pred             CcchhhHHHHhHHHHHHHHHhhhcCCCCCcCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeecCCCcchhh
Q 002903            1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRR   80 (868)
Q Consensus         1 ~f~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rr   80 (868)
                      |++|+||||+.|..|+++. ....        ....+||..++++| |+.|++++++.++|.++.|+|||||||||++||
T Consensus        79 f~~L~NiaEd~~~~~r~~~-~~~~--------~~~~~sL~~~~~~L-k~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~Rr  148 (910)
T COG2352          79 FLLLANIAEDYHRIRRRQI-HEAA--------GDSDGSLAATLKKL-KEQGLSPETVARALENLNVELVLTAHPTEVQRR  148 (910)
T ss_pred             HhhhhhHHHHhhhHhhhhh-hhcc--------CCCcchHHHHHHHH-HhcCCCHHHHHHHHHhCceeEEEecCchHHHHH
Confidence            6899999999999976653 2111        22349999999999 899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002903           81 SLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVD  160 (868)
Q Consensus        81 tvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~eir~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~  160 (868)
                      ||++++++|..+|.+++...+++. ++.++++|++.|..+|||++||..||||.|||+||++||++|||++||++|++++
T Consensus       149 Tv~~~~~~I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~  227 (910)
T COG2352         149 TVIDKQREINRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELN  227 (910)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988777666 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCCHHHH
Q 002903          161 TALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSM----WRCSDELR  236 (868)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~----~~~s~~l~  236 (868)
                      .+++++++ ...|+.++|++|||||||||||||||||+||++++..+|++++++|..+|++|..+||+    ++||++|.
T Consensus       228 ~~~~~~~~-~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~  306 (910)
T COG2352         228 EALQETFG-ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELL  306 (910)
T ss_pred             HHHHHhcc-cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHH
Confidence            99999875 44566678999999999999999999999999999999999999999999999999999    68999999


Q ss_pred             HhHHHhhhhchhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHH
Q 002903          237 HRADVLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYR  316 (868)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~  316 (868)
                      ++++.-.    +...        .+.+||||++|.+|+.||.+|..++.+...+.. ......+|.+++||++||..|++
T Consensus       307 ala~~~~----d~~~--------~r~~EPYR~al~~i~~rL~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~  373 (910)
T COG2352         307 ALAGESQ----DQSI--------RRADEPYRRALKYIRSRLMATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQ  373 (910)
T ss_pred             HHHhcCc----cccc--------hhccccHHHHHHHHHHHHHHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHH
Confidence            9776522    1111        245899999999999999999988765543221 22335589999999999999999


Q ss_pred             HHHhcCCccchhhHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHhHhcCCCCC
Q 002903          317 SLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIG-SYREWSEEKRQEWLLSELSGKRPL  395 (868)
Q Consensus       317 sL~~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl  395 (868)
                      ||.+||++.+|+|.|.+++++|++|||||++|||||||++|++||+||++++|++ +|.+|+|++|++||.+||.++|||
T Consensus       374 SL~~~G~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL  453 (910)
T COG2352         374 SLHACGMEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPL  453 (910)
T ss_pred             HHHhcCCceeccchHHHHHHHHHhcCceeeccccccccchHHHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhC----CCCchhHHHhhcCCChhhHHHHHHHHHHcCCC----CCCccccccCChHHHh
Q 002903          396 FGPDLPKTEEIADVLETFHVIAEL----PADNFGAYIISMATAPSDVLAVELLQRECHVK----QPLRVVPLFEKLADLE  467 (868)
Q Consensus       396 ~~~~~~~s~~~~e~l~~f~~i~~~----~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~----~~l~VvPLFETi~DL~  467 (868)
                      +++.+++|+.++++|+||++++++    |+++|++||||||+++||||||++|+||+|+.    .+++|||||||||||+
T Consensus       454 ~p~~~~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~  533 (910)
T COG2352         454 LPPFWQPSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLD  533 (910)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHh
Confidence            999999999999999999999975    57789999999999999999999999999997    7899999999999999


Q ss_pred             cHHHHHHHHhccHHHHhhc---CCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCC
Q 002903          468 AAPAALARLFSVDWYRNRI---NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGG  544 (868)
Q Consensus       468 ~a~~il~~Ll~~p~yr~~l---~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGG  544 (868)
                      ||+.||++||++|+||+.|   +|.||||||||||||||||++|||++|+||.+|+++|+++||+++|||||||||||||
T Consensus       534 na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGG  613 (910)
T COG2352         534 NAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGG  613 (910)
T ss_pred             ccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCC
Confidence            9999999999999999999   3599999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhcCCCCcccCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCC-CCCChhHHHHHHHHHHHHHHHH
Q 002903          545 GPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPP-ISPKPEWRTMMDEMAVIATEEY  623 (868)
Q Consensus       545 GPt~~aI~aqP~gtv~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~-~~~~~~~~~~m~~ls~~s~~~Y  623 (868)
                      ||+|.||+|||||||+|+||+|||||||+.|||+|++|.||||.+++|+|++++.|+ +.|+++|+.+|+++|+.||++|
T Consensus       614 GPa~~AILsQP~gsv~g~iRiTEQGE~I~~Kyg~p~~A~~nLe~l~sAvLeAsllp~~~dp~~~~~~iMd~ls~~S~~~Y  693 (910)
T COG2352         614 GPAYAAILSQPPGSVKGRIRITEQGEMIAFKYGLPEVARRNLETLVSAVLEASLLPPKPDPKESWRAIMDELSDISCDAY  693 (910)
T ss_pred             chHHHHHhcCCCcccCCceEeehhHHHHHHhhCChHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999876 6777889999999999999999


Q ss_pred             HHhhhcCCchhHHHHhhCchhHhhhCCCCCCCCccCCC-CCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCCC
Q 002903          624 RSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPS-GGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIR  702 (868)
Q Consensus       624 r~lv~~~p~F~~yF~~aTPi~ei~~lnIGSRPakR~~~-~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~  702 (868)
                      |+|||++|+|++||+++|||.||++|||||||||||.. ++++|||||||||||||+|+|||||||+|+||+++++++|+
T Consensus       694 R~lV~~~pdFvdyF~~~TPi~EIs~LniGSRPA~Rk~~~~~ie~LRAIPWVFSWsQnR~mLP~WyG~Gsal~~~i~~g~~  773 (910)
T COG2352         694 RGLVRENPDFVDYFRQATPIQEISKLNIGSRPASRKPTTGGIESLRAIPWVFSWTQNRLMLPAWYGVGSALQRFIEEGPE  773 (910)
T ss_pred             HHHhcCCCcHHHHHHhcCcHHHHhcCCCCCCCcCCCCCCCccccccccchhhhhhhhhhcchhhhhhhHHHHHHHHcCcc
Confidence            99999999999999999999999999999999999987 55999999999999999999999999999999999999988


Q ss_pred             cHHHHHHHHhcCchHHHHHHHHHHHHHhccHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHhCCCCcccCCch
Q 002903          703 NLHMLQEMYNNWPFFRVTIDLVEMVFAKGNHKIAALYDQLLVSKDLW-SFGEKLRVNYEETKGLLLQIAGHKDLLEGDPY  781 (868)
Q Consensus       703 ~~~~L~~my~~wpfF~~~idnvem~LaKaD~~Ia~~Y~~l~~d~~~~-~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~  781 (868)
                      +.+.|++||++||||+++|+||+|||+|+||.||.+|+++++|+++. ++|+.|++||+.|+++|+.|+|+++||+++|+
T Consensus       774 ~~~~L~~m~~~WPFF~s~Lsn~emvlaKsd~~iA~~Y~qll~d~~~~~~lf~~i~~e~~~T~~~vl~I~~~~~LL~d~p~  853 (910)
T COG2352         774 NLALLRDMYQNWPFFSSRLSNMEMVLAKSDLWLAEHYAQLLVDPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPW  853 (910)
T ss_pred             hHHHHHHHHhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhcCCHH
Confidence            89999999999999999999999999999999999999999999965 89999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHhcCCCCCCccCCccchhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHH
Q 002903          782 LKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIA  861 (868)
Q Consensus       782 l~~si~~R~pyvdpLn~lQvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lTIngIA  861 (868)
                      |++||.+||||+||||++|||||+|+|+...+         +  .                   .+.++++|++||||||
T Consensus       854 La~Si~lRn~Y~dPLn~LQvELLkR~R~~~~~---------~--~-------------------~~~~er~i~lTInGIA  903 (910)
T COG2352         854 LAESIALRNPYLDPLNVLQVELLKRSRQSKRG---------D--P-------------------DPEVERALLLTINGIA  903 (910)
T ss_pred             HHHHHHHhccccChhHHHHHHHHHHHhhcccC---------C--C-------------------CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999964310         0  0                   2669999999999999


Q ss_pred             hhhccCC
Q 002903          862 AGLQNTG  868 (868)
Q Consensus       862 aGlrnTG  868 (868)
                      |||||||
T Consensus       904 aGlRNTG  910 (910)
T COG2352         904 AGLRNTG  910 (910)
T ss_pred             HhhccCC
Confidence            9999999

>PRK00009 phosphoenolpyruvate carboxylase; Reviewed	Back alignment and domain information

>PTZ00398 phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []	Back alignment and domain information

>PRK13655 phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type	Back alignment and domain information

>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C	Back alignment and domain information

>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]	Back alignment and domain information

>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4	Back alignment and domain information

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	Back alignment and domain information

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase	Back alignment and domain information

>TIGR01064 pyruv_kin pyruvate kinase	Back alignment and domain information

>PRK09206 pyruvate kinase; Provisional	Back alignment and domain information

>PRK08187 pyruvate kinase; Validated	Back alignment and domain information

>PLN02623 pyruvate kinase	Back alignment and domain information

>PRK05826 pyruvate kinase; Provisional	Back alignment and domain information

>PTZ00300 pyruvate kinase; Provisional	Back alignment and domain information

>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors	Back alignment and domain information

>TIGR01588 citE citrate lyase, beta subunit	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

>PRK06247 pyruvate kinase; Provisional	Back alignment and domain information

>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		868
3zgb_A		972	Greater Efficiency Of Photosynthetic Carbon Fixatio		0.0
3zge_A		990	Greater Efficiency Of Photosynthetic Carbon Fixatio		0.0
1jqo_A		970	Crystal Structure Of C4-Form Phosphoenolpyruvate Ca		0.0
1qb4_A		883	Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruva		1e-178

>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 972

Back alignment and structure

Iteration: 1

Score = 1560 bits (4038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 743/868 (85%), Positives = 798/868 (91%), Gaps = 2/868 (0%) Query: 1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60 MLNLANLAEE+QIA+RRRIK LK+GDFADE +ATTESDIEETFK+LV +LNKSPEE+FDA Sbjct: 107 MLNLANLAEEVQIAYRRRIK-LKRGDFADEANATTESDIEETFKKLVLKLNKSPEEVFDA 165 Query: 61 LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120 LKNQTVDLVLTAHPTQSVRRSLLQKH RIRNCLAQLYAKDITPDDKQELDEAL REIQAA Sbjct: 166 LKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAA 225 Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180 FRTDEIRRT PTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ Sbjct: 226 FRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 285 Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMA+N+Y+SQIEDLMFEMSMWRC+ ELR RA+ Sbjct: 286 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMASNMYFSQIEDLMFEMSMWRCNSELRVRAE 345 Query: 241 VLHRSSKKDAKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAV 300 L+R++++D KHYIEFWKQ+PP EPYRVILGDVRDKLY TRER R LLAHGISDIPEEAV Sbjct: 346 ELYRTARRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERSRHLLAHGISDIPEEAV 405 Query: 301 FTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDV 360 +TNVEQFLEPLELCYRSLC CGDR IADGSLLDFLRQVSTFGLSLV+LDIRQESDRHTDV Sbjct: 406 YTNVEQFLEPLELCYRSLCDCGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDV 465 Query: 361 IDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELP 420 +DAIT+HLEIGSYREWSEEKRQEWLL+ELSGKRPLFG DLPKTEE+ DVL+TF+V+AELP Sbjct: 466 LDAITQHLEIGSYREWSEEKRQEWLLAELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELP 525 Query: 421 ADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKXXXXXXXXXXXXXXFSVD 480 +D FGAYIISMAT+PSDVLAVELLQRECHVK PLRVVPLFEK FS+D Sbjct: 526 SDCFGAYIISMATSPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAAMARLFSID 585 Query: 481 WYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHXXXXXX 540 WYRNRI+GKQEVMIGYSDSGKDAGRFSAAWQLYKAQEE+IKVAK++G+KL +FH Sbjct: 586 WYRNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTV 645 Query: 541 XXXXXPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRP 600 PTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRF AATLEHGM P Sbjct: 646 GRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNP 705 Query: 601 PISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 660 PISP+PEWR +MD+MAV+ATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP Sbjct: 706 PISPRPEWRELMDQMAVVATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKP 765 Query: 661 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRVT 720 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKH I+KD +NL MLQEMY WPFFRVT Sbjct: 766 SGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIKKDSKNLQMLQEMYKTWPFFRVT 825 Query: 721 IDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDP 780 IDLVEMVFAKG+ IAAL D+LLVS+DLW FGE LR NYEETK LL+IAGH+DLLEGDP Sbjct: 826 IDLVEMVFAKGDPGIAALNDKLLVSEDLWPFGESLRANYEETKDYLLKIAGHRDLLEGDP 885 Query: 781 YLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLN 840 YLKQR+RLRD+YITTLNVCQAYTLKRIRDPNYHV +RPHIS+E +E KPADEL+ LN Sbjct: 886 YLKQRIRLRDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYA-AEPSKPADELIHLN 944 Query: 841 LSSEYAPGLEDTLILTMKGIAAGLQNTG 868 +SEYAPGLEDTLILTMKGIAAG+QNTG Sbjct: 945 PTSEYAPGLEDTLILTMKGIAAGMQNTG 972

PyMOL of 3zgb

>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 990

Back alignment and structure

>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase From Maize Length = 970

Back alignment and structure

>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate Carboxylase Length = 883

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		868
1jqo_A		970	Phosphoenolpyruvate carboxylase; beta barrel, carb	0.0
1jqn_A		883	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	0.0
3odm_A		560	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	2e-79
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12

>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Length = 970	Back alignment and structure

 Score = 1220 bits (3157), Expect = 0.0
 Identities = 688/869 (79%), Positives = 766/869 (88%), Gaps = 4/869 (0%)

Query: 1   MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
           MLNLANLAEE+QIAHRRR  KLKKG FADE SATTESDIEET KRLV E+ KSPEE+F+A
Sbjct: 105 MLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEA 164

Query: 61  LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
           LKNQTVDLV TAHPTQS RRSLLQK+ARIRNCL QL AKDIT DDKQELDEALQREIQAA
Sbjct: 165 LKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAA 224

Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
           FRTDEIRR QPTPQ EMR GMSY HET+WKGVPKFLRRVDTALKNIGINER+PYN  LI+
Sbjct: 225 FRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIR 284

Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
           FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLY  QIE+LMFE+SMWRC+DELR RA+
Sbjct: 285 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAE 344

Query: 241 VLHRSSKKD-AKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEA 299
            LH SS     K+YIEFWKQIPPNEPYRVILG VRDKLY TRER R LLA G+S+I  E+
Sbjct: 345 ELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAES 404

Query: 300 VFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTD 359
            FT++E+FLEPLELCY+SLC CGD+AIADGSLLD LRQV TFGLSLV+LDIRQES+RHTD
Sbjct: 405 SFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTD 464

Query: 360 VIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAEL 419
           VIDAIT HL IGSYREW E+KRQEWLLSEL GKRPL  PDLP+T+EIADV+  FHV+AEL
Sbjct: 465 VIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAEL 524

Query: 420 PADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSV 479
           P D+FG YIISMATAPSDVLAVELLQREC V+QPL VVPLFE+LADL++APA++ RLFSV
Sbjct: 525 PPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSV 584

Query: 480 DWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGT 539
           DWY +RI GKQ+VM+GYSDSGKDAGR SAAWQLY+AQEE+ +VAK+YG+KLT+FHGRGGT
Sbjct: 585 DWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGT 644

Query: 540 VGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMR 599
           VGRGGGPTHLAILSQPPDTI+GS+RVTVQGEVIE  FGEEHLCF+TLQRFTAATLEHGM 
Sbjct: 645 VGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMH 704

Query: 600 PPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRK 659
           PP+SPKPEWR +MDEMAV+ATEEYRS+V KE RFVEYFR ATPE EYGRMNIGSRP+KR+
Sbjct: 705 PPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRR 764

Query: 660 PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRV 719
           P GGI +LRAIPWIF+WTQTRFHLPVWLG GAAFK  I KD+RN  +L+EMYN WPFFRV
Sbjct: 765 PGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRV 824

Query: 720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGD 779
           T+DL+EMVFAKG+  IA LYD+LLV+++L  FG++LR  Y ET+ LLLQIAGHKD+LEGD
Sbjct: 825 TLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGD 884

Query: 780 PYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKL 839
           P+LKQ L LR+ YITTLNV QAYTLKRIRDPN+ V  +P +S+E  +         LVKL
Sbjct: 885 PFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEFADE---NKPAGLVKL 941

Query: 840 NLSSEYAPGLEDTLILTMKGIAAGLQNTG 868
           N +SEY PGLEDTLILTMKGIAAG+QNTG
Sbjct: 942 NPASEYPPGLEDTLILTMKGIAAGMQNTG 970

PyMOL of 1jqo

>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883	Back alignment and structure

>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens} Length = 560	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		868
1jqo_A		970	Phosphoenolpyruvate carboxylase; beta barrel, carb	100.0
1jqn_A		883	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	100.0
3odm_A		560	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	100.0
1e0t_A		470	Pyruvate kinase, PK; phosphotransferase, glycolysi	93.57
1sgj_A		284	Citrate lyase, beta subunit; trimer, TIM barrel, s	92.74
1dxe_A		256	2-dehydro-3-deoxy-galactarate aldolase; class II a	91.99
3qtg_A		461	Pyruvate kinase, PK; TIM barrel, glycolysis, trans	91.92
3gr4_A		550	Pyruvate kinase isozymes M1/M2; activator, acetyla	91.76
1a3w_A		500	Pyruvate kinase; allosteric regulation, tranferase	91.73
3hqn_D		499	Pyruvate kinase, PK; TIM barrel, T-state enzyme, t	90.5
3qqw_A		332	Putative citrate lyase; TIM beta/alpha-barrel, str	90.31
3khd_A		520	Pyruvate kinase; malaria, structural genomics, str	90.19
3qll_A		316	Citrate lyase; beta barrel; 2.45A {Yersinia pestis	89.85
3gg8_A		511	Pyruvate kinase; malaria, genomics, proteomics, gl	89.7
3r4i_A		339	Citrate lyase; TIM beta/alpha-barrel, structural g	89.69
3qz6_A		261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	89.27
2v5j_A		287	2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l	88.37
3t05_A		606	Pyruvate kinase, PK; tetramer, glycolysis, transfe	87.76
2e28_A		587	Pyruvate kinase, PK; allosteric, transferase; 2.40	87.51
1izc_A		339	Macrophomate synthase intermolecular diels-aldera;	86.49
2vws_A		267	YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher	80.92

>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3	Back alignment and structure

Probab=100.00  E-value=3.2e-247  Score=2191.89  Aligned_cols=865  Identities=80%  Similarity=1.269  Sum_probs=780.2

Q ss_pred             CcchhhHHHHhHHHHHHHHHhhhcCCCCCcCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeecCCCcchhh
Q 002903            1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRR   80 (868)
Q Consensus         1 ~f~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rr   80 (868)
                      ||||+|||||+|++|++|......++.++....+.++||+.++.+|+++.|+++++|+++|+++.|+|||||||||++||
T Consensus       105 ~~~L~NiAEe~~~~r~~r~~~~~~~~~~~~~~~~~~~sl~~~~~~L~~~~g~~~~~i~~~L~~~~v~pVlTAHPTE~~Rr  184 (970)
T 1jqo_A          105 MLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARR  184 (970)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCcchHHHHHHHHHHHcCCCHHHHHHHHhcCceeeeeccCCccccHH
Confidence            79999999999999877642211132211112346799999999995588999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002903           81 SLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVD  160 (868)
Q Consensus        81 tvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~eir~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~  160 (868)
                      |||+||++|+++|.++++.++|+.|+++++++|+++|+.||||||||+.||||.||++|||+||++|||++||++|++++
T Consensus       185 Tvl~k~~~I~~lL~~l~~~~lt~~e~~~~~~~L~~~I~~lW~TdeiR~~kPtv~DE~~~gl~y~~~sl~~avP~~~r~l~  264 (970)
T 1jqo_A          185 SLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVD  264 (970)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhCChhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCHHHHHhHH
Q 002903          161 TALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD  240 (868)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~~~~s~~l~~~~~  240 (868)
                      ++|.++|.+..+|...|+|+|||||||||||||||||+||++|+.++|++|+++|++++++|+++||++.||++|++.++
T Consensus       265 ~al~~~~~~~~l~~~~~~i~fGSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~eLS~s~~s~eL~~~~~  344 (970)
T 1jqo_A          265 TALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAE  344 (970)
T ss_dssp             HHHHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCCCCCCCcccccCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            99988754355665556699999999999999999999999999999999999999999999999999999999998776


Q ss_pred             Hhhhhchhhh-hhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHHHHH
Q 002903          241 VLHRSSKKDA-KHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLC  319 (868)
Q Consensus       241 ~~~~~~~~~~-~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~sL~  319 (868)
                      ...+..++.. .+|.+++..++++||||++|..|++||.+|+.++...+.+.....+....|.+++||++||++|++||+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~EPYR~~L~~i~~rL~~T~~~~~~~l~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~  424 (970)
T 1jqo_A          345 ELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLC  424 (970)
T ss_dssp             HHHHHHCCCCCTTCSSSCSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccchhcccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            6443333222 355555566778999999999999999999987665443322111223479999999999999999999


Q ss_pred             hcCCccchhhHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCC
Q 002903          320 SCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPD  399 (868)
Q Consensus       320 ~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~  399 (868)
                      +||+..+|+|.|.+|||+|++|||||++|||||||++|++|++||++++|+++|.+|||++|++||.+||+++|||+++.
T Consensus       425 ~~g~~~iA~g~L~~lir~V~~FGfhLa~LDiRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpL~~~~  504 (970)
T 1jqo_A          425 DCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPD  504 (970)
T ss_dssp             HTSCCTTTTTHHHHHHHHHHHHTTSSSEEEEECCHHHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTT
T ss_pred             HCCChhhhhhhHHHHHHHHHHhCeeccccchhhcchHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhcc
Q 002903          400 LPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSV  479 (868)
Q Consensus       400 ~~~s~~~~e~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~  479 (868)
                      .++|++++++|+||++++++|+++|++||||||+++||||+|++|+|++|+.++|+|||||||++||+|||.||++||++
T Consensus       505 ~~~s~~~~evL~~f~~i~~~g~~a~~~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VVPLFETi~DL~~a~~im~~ll~~  584 (970)
T 1jqo_A          505 LPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSV  584 (970)
T ss_dssp             CCCCHHHHHHHHHHHHHHHSCSTTEEEEEETTCCSTHHHHHHHHHHHHTCCSSCCCEEEEECSHHHHHTHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHHhChhhhCeEEeCCCCCHHHHHHHHHHHHHcCCCCCCCeeCCCCCHHHHHhHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCchhhhhhcCCCCcc
Q 002903          480 DWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTI  559 (868)
Q Consensus       480 p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGPt~~aI~aqP~gtv  559 (868)
                      |+||+|++++|||||||||||||||+++|+|+||+||++|+++|++|||+++|||||||||||||||+|+||+||||||+
T Consensus       585 p~yr~~l~~~QeVMLGYSDS~KD~G~laA~w~ly~Aq~~L~~v~~~~gV~l~lFHGRGGsvgRGGgp~~~ailaqP~gsv  664 (970)
T 1jqo_A          585 DWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTI  664 (970)
T ss_dssp             HHHHHHHTSEEEEEEESTTHHHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGGTCCCHHHHHHTSCTTSC
T ss_pred             hHHHHhhCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHh
Q 002903          560 HGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRL  639 (868)
Q Consensus       560 ~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~  639 (868)
                      +|.+|+|||||||++|||+|++|.||||++++|++++++.+++.++++|+++|+.||+.|+++||++||++|+|++||++
T Consensus       665 ~G~ir~TeQGEvI~~kYg~p~~a~~nLe~~~aA~l~a~l~~~~~~~~~~~~~m~~la~~s~~~Yr~lv~~~p~Fv~yF~~  744 (970)
T 1jqo_A          665 NGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRS  744 (970)
T ss_dssp             TTEEEEEEEHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CCceEEEeecHHHHHhcCChHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999876666778999999999999999999999999999999999


Q ss_pred             hCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCCCcHHHHHHHHhcCchHHH
Q 002903          640 ATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRV  719 (868)
Q Consensus       640 aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~  719 (868)
                      +||+.||++|||||||+||+++++++|||||||||||||+|++||||||+|+||++++++++++++.|++||++||||++
T Consensus       745 aTP~~ei~~LnIGSRPa~R~~~~~i~~LRAIPWvfsWtQ~R~~lP~w~G~GsAl~~~~~~~~~~l~~L~~my~~wPfF~t  824 (970)
T 1jqo_A          745 ATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRV  824 (970)
T ss_dssp             HSCCGGGGGGCCSCCC--------CTTCCSHHHHHHHHHTTCCHHHHTTHHHHHHHHHHHCTTHHHHHHHHHHHCHHHHH
T ss_pred             hChHHHHHhCccCCCCccCCCCCCcccccccchhhHHHhccCCcchhhhHHHHHHHHHHcCchhHHHHHHHHHhChHHHH
Confidence            99999999999999999999888999999999999999999999999999999999999887678999999999999999


Q ss_pred             HHHHHHHHHHhccHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchHHHHHHhhhhhhhhhHHH
Q 002903          720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVC  799 (868)
Q Consensus       720 ~idnvem~LaKaD~~Ia~~Y~~l~~d~~~~~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~l  799 (868)
                      +|||++|+|+|+|+.||++|+++++|++++.||++|++||++|+++|++|||+++||+++|+|++||++|||||||||++
T Consensus       825 ~ldn~eM~laK~Dl~iA~~Y~~ll~d~~~~~i~~~i~~E~~~T~~~ll~itg~~~LL~~~p~l~~si~lR~pyvdpLn~l  904 (970)
T 1jqo_A          825 TLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVF  904 (970)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTSCSTTHHHHHHHHHHHHHHHHHHHHHHTCSSTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccChHHHHHHHhhhHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCccCCccchhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHHhhhccCC
Q 002903          800 QAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG  868 (868)
Q Consensus       800 QvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lTIngIAaGlrnTG  868 (868)
                      ||+||||+|+.+...+..+..+++..+  +. ..+||+++|+...+.+.++++|++|||||||||||||
T Consensus       905 QvelL~r~R~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~lllTInGIAAGlrNTG  970 (970)
T 1jqo_A          905 QAYTLKRIRDPNFKVTPQPPLSKEFAD--EN-KPAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG  970 (970)
T ss_dssp             HHHHHHHHHCTTCCCCCCCCCSCC----------CTTTTTSSSCSSCTTHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhcCCCCCccccccccccc--cc-chhhhhccCcccccchHHHHHHHHHHHHHHHhcccCC
Confidence            999999999732100001111111101  11 2449999999999999999999999999999999999

PyMOL of 1jqo

>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A	Back alignment and structure

>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}	Back alignment and structure

>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A	Back alignment and structure

>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5	Back alignment and structure

>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A	Back alignment and structure

>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}	Back alignment and structure

>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...	Back alignment and structure

>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A	Back alignment and structure

>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*	Back alignment and structure

>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}	Back alignment and structure

>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}	Back alignment and structure

>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}	Back alignment and structure

>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A	Back alignment and structure

>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}	Back alignment and structure

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0	Back alignment and structure

>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A	Back alignment and structure

>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*	Back alignment and structure

>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}	Back alignment and structure

>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5	Back alignment and structure

>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		868
d1jqoa_		936	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	0.0
d1jqna_		880	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	0.0

>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 936	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 688/869 (79%), Positives = 766/869 (88%), Gaps = 4/869 (0%)

Query: 1   MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDA 60
           MLNLANLAEE+QIAHRRR  KLKKG FADE SATTESDIEET KRLV E+ KSPEE+F+A
Sbjct: 71  MLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEA 130

Query: 61  LKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAA 120
           LKNQTVDLV TAHPTQS RRSLLQK+ARIRNCL QL AKDIT DDKQELDEALQREIQAA
Sbjct: 131 LKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAA 190

Query: 121 FRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQ 180
           FRTDEIRR QPTPQ EMR GMSY HET+WKGVPKFLRRVDTALKNIGINER+PYN  LI+
Sbjct: 191 FRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIR 250

Query: 181 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD 240
           FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLY  QIE+LMFE+SMWRC+DELR RA+
Sbjct: 251 FSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAE 310

Query: 241 VLHRSSKKD-AKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEA 299
            LH SS     K+YIEFWKQIPPNEPYRVILG VRDKLY TRER R LLA G+S+I  E+
Sbjct: 311 ELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAES 370

Query: 300 VFTNVEQFLEPLELCYRSLCSCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTD 359
            FT++E+FLEPLELCY+SLC CGD+AIADGSLLD LRQV TFGLSLV+LDIRQES+RHTD
Sbjct: 371 SFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTD 430

Query: 360 VIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAEL 419
           VIDAIT HL IGSYREW E+KRQEWLLSEL GKRPL  PDLP+T+EIADV+  FHV+AEL
Sbjct: 431 VIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAEL 490

Query: 420 PADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSV 479
           P D+FG YIISMATAPSDVLAVELLQREC V+QPL VVPLFE+LADL++APA++ RLFSV
Sbjct: 491 PPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSV 550

Query: 480 DWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGT 539
           DWY +RI GKQ+VM+GYSDSGKDAGR SAAWQLY+AQEE+ +VAK+YG+KLT+FHGRGGT
Sbjct: 551 DWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGT 610

Query: 540 VGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMR 599
           VGRGGGPTHLAILSQPPDTI+GS+RVTVQGEVIE  FGEEHLCF+TLQRFTAATLEHGM 
Sbjct: 611 VGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMH 670

Query: 600 PPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRK 659
           PP+SPKPEWR +MDEMAV+ATEEYRS+V KE RFVEYFR ATPE EYGRMNIGSRP+KR+
Sbjct: 671 PPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRR 730

Query: 660 PSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRV 719
           P GGI +LRAIPWIF+WTQTRFHLPVWLG GAAFK  I KD+RN  +L+EMYN WPFFRV
Sbjct: 731 PGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRV 790

Query: 720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGD 779
           T+DL+EMVFAKG+  IA LYD+LLV+++L  FG++LR  Y ET+ LLLQIAGHKD+LEGD
Sbjct: 791 TLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGD 850

Query: 780 PYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKL 839
           P+LKQ L LR+ YITTLNV QAYTLKRIRDPN+ V  +P +S+E  +         LVKL
Sbjct: 851 PFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEFADENK---PAGLVKL 907

Query: 840 NLSSEYAPGLEDTLILTMKGIAAGLQNTG 868
           N +SEY PGLEDTLILTMKGIAAG+QNTG
Sbjct: 908 NPASEYPPGLEDTLILTMKGIAAGMQNTG 936

PyMOL of d1jqoa_

>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		868
d1jqoa_		936	Phosphoenolpyruvate carboxylase {Escherichia coli	100.0
d1jqna_		880	Phosphoenolpyruvate carboxylase {Escherichia coli	100.0
d1sgja_		231	Citrate lyase, beta subunit {Deinococcus radiodura	91.22
d1u5ha_		223	Citrate lyase, beta subunit {Mycobacterium tubercu	85.03
d1dxea_		253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	83.73
d1e0ta2		246	Pyruvate kinase, N-terminal domain {Escherichia co	80.54

>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-248  Score=2221.81  Aligned_cols=865  Identities=80%  Similarity=1.269  Sum_probs=779.8

Q ss_pred             CcchhhHHHHhHHHHHHHHHhhhcCCCCCcCCCCCcccHHHHHHHHHHhcCCCHHHHHHHhhcCceeEeeecCCCcchhh
Q 002903            1 MLNLANLAEELQIAHRRRIKKLKKGDFADENSATTESDIEETFKRLVGELNKSPEEIFDALKNQTVDLVLTAHPTQSVRR   80 (868)
Q Consensus         1 ~f~L~NiAE~~~~~r~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rr   80 (868)
                      ||+|+|||||+|++|++|..+...+...++...+.++||+++|.+|+++.|+++++|++.|+++.|+|||||||||++||
T Consensus        71 ~f~L~NiAE~~~~~rr~R~~~~~~~~~~~~g~~~~~~sl~~al~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~Rr  150 (936)
T d1jqoa_          71 MLNLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARR  150 (936)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHhcCCCHHHHHHHHhcCceeEEeccCCCCCchH
Confidence            79999999999999988864433333222223568899999999995567999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002903           81 SLLQKHARIRNCLAQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVD  160 (868)
Q Consensus        81 tvL~~~~~I~~~L~~~d~~~~~~~e~~~~~~~L~~~i~~LW~T~eir~~kPtv~DE~~~~l~y~~~~l~~avP~~~~~l~  160 (868)
                      |||+||++|+.+|.++++.++|+.|+.+++++|+++|+.||||+++|..||||.||++|||+||+++||++||.+|++|+
T Consensus       151 TvL~~~r~I~~lL~~ld~~~lt~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~~l~y~~~sl~~avP~l~~~l~  230 (936)
T d1jqoa_         151 SLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVD  230 (936)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHhCccccccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCccccCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCCHHHHHhHH
Q 002903          161 TALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFEMSMWRCSDELRHRAD  240 (868)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~i~fgSWiGGDRDGNP~VTa~vT~~~~~~~r~~al~~y~~~l~~L~~~LS~~~~s~~l~~~~~  240 (868)
                      +++.++|++...|..++||+|||||||||||||||||+||++|+.++|++|+++|++++++|.++||++.|+.++.....
T Consensus       231 ~al~~~~~~~~~~~~~~~irfGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~~~~~~~  310 (936)
T d1jqoa_         231 TALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAE  310 (936)
T ss_dssp             HHHHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_pred             HHHHhcCCCcccccCCCceeeeeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhhHHH
Confidence            99999876556677789999999999999999999999999999999999999999999999999999999988877665


Q ss_pred             Hhhhhchhh-hhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCChHHhhhHHHHHHHHHH
Q 002903          241 VLHRSSKKD-AKHYIEFWKQIPPNEPYRVILGDVRDKLYQTRERVRQLLAHGISDIPEEAVFTNVEQFLEPLELCYRSLC  319 (868)
Q Consensus       241 ~~~~~~~~~-~~~~~~~~~~~~~~EpyR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~sL~  319 (868)
                      .+.+..... ...+.++....+++||||++|..|++||.+|..+....+.+.........+|.+++||++||.+|++||.
T Consensus       311 ~l~~~~~~~~~~~~~~~~~~~~~~EPyR~~L~~i~~RL~~t~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~  390 (936)
T d1jqoa_         311 ELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLC  390 (936)
T ss_dssp             HHHHHHCCCCCTTCSSSCSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence            544433222 1122223345577899999999999999999988776664433333345689999999999999999999


Q ss_pred             hcCCccchhhHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhHhcCCCCCCCCC
Q 002903          320 SCGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVIDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGPD  399 (868)
Q Consensus       320 ~~~~~~~a~~~L~~lir~v~~FGfhla~LDIRQ~S~~H~~al~el~~~~g~~~Y~~l~E~~r~~~L~~eL~~~rpl~~~~  399 (868)
                      ++|+..+|+|.|.+||++|++||||||+|||||||++|++|++||++++|+++|.+|+|++|+++|.++|.++||+.+++
T Consensus       391 ~~g~~~la~~~L~~Lir~V~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~y~~~~e~~r~~~L~~eL~~~rpl~~~~  470 (936)
T d1jqoa_         391 DCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPD  470 (936)
T ss_dssp             HTSCCTTTTTHHHHHHHHHHHHTTSSSEEEEECCHHHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTT
T ss_pred             HcCcchhhhhhhHHHHHHHHHccccccchhhhhhhHHHHHHHHHHHHhcCCCCcccCChHHHHHHHHHHhcCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCchhHHHhhcCCChhhHHHHHHHHHHcCCCCCCccccccCChHHHhcHHHHHHHHhcc
Q 002903          400 LPKTEEIADVLETFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSV  479 (868)
Q Consensus       400 ~~~s~~~~e~l~~f~~i~~~~~~a~g~yIISmt~s~sDvL~V~~L~ke~Gl~~~l~VvPLFETi~DL~~a~~il~~Ll~~  479 (868)
                      .+.++++++++++|++++++++++||+||||||+++||||+|++|+|++|+.++|+||||||||+||+|||.||++||++
T Consensus       471 ~~~~~e~~~~l~~~~~i~~~g~~aig~YIISmt~s~sDvL~V~lLak~~g~~~~l~VvPLFETi~DL~~a~~il~~Ll~~  550 (936)
T d1jqoa_         471 LPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSV  550 (936)
T ss_dssp             CCCCHHHHHHHHHHHHHHHSCSTTEEEEEETTCCSTHHHHHHHHHHHHTCCSSCCCEEEEECSHHHHHTHHHHHHHHHTC
T ss_pred             cccchhHHHHHHHHHHHHhcCccccccchhccCCcHHHHHHHHHHHHHcCCCCCCCcccccccHHHHHhhHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCeeEEEEeeccCCCchhhhhHHHHHHHHHHHHHHHHHHhCCeEEEecCCCCCCCCCCCchhhhhhcCCCCcc
Q 002903          480 DWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTI  559 (868)
Q Consensus       480 p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~Ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGPt~~aI~aqP~gtv  559 (868)
                      |+||+||+|+||||||||||||||||+||+|+||+||++|+++|++|||+++|||||||||||||||+|+||+|||+||+
T Consensus       551 p~yr~~l~~~QeVMlGYSDS~KDgG~laa~W~ly~Aq~~L~~v~~~~gv~l~~FHGRGGsvgRGGGPt~~ai~sqP~gs~  630 (936)
T d1jqoa_         551 DWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTI  630 (936)
T ss_dssp             HHHHHHHTSEEEEEEESTTHHHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGGTCCCHHHHHHTSCTTSC
T ss_pred             hHHHHhhccceEEEeccccccchhHHHHHHHHHHHHHHHHHHHHHHcCceEEEEecCCCccccCCCChHHHHHhCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEeeccchhhHhhcCChhHHHHHHHHHHHHHHHccCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHh
Q 002903          560 HGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPISPKPEWRTMMDEMAVIATEEYRSIVFKEPRFVEYFRL  639 (868)
Q Consensus       560 ~g~irvTeQGEvI~~kYg~~~~A~r~LE~~~aa~l~~sl~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv~~~p~F~~yF~~  639 (868)
                      +|+||+|||||||++|||+|.+|.||||++++|++++++.++..+.++|+++|++||+.|+++||++|+++|+|++||++
T Consensus       631 ~g~ir~TeQGEvIs~ky~~~~~a~~~Le~~~aa~l~~~~~~~~~~~~~~~~~~~~ls~~s~~~Yr~lv~~~p~F~~yf~~  710 (936)
T d1jqoa_         631 NGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRS  710 (936)
T ss_dssp             TTEEEEEEEHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CCceEEEeeeeehhhhccCHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999988888889999999999999999999999999999999999


Q ss_pred             hCchhHhhhCCCCCCCCccCCCCCCCCccccchhhhhhhhcccccchhhHHHHHHHHHHhCCCcHHHHHHHHhcCchHHH
Q 002903          640 ATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIQKDIRNLHMLQEMYNNWPFFRV  719 (868)
Q Consensus       640 aTPi~ei~~lnIGSRPakR~~~~~ledLRAIPWVFaWtQ~R~~lPgWyGvGsAL~~~~~~~~~~~~~L~~my~~wpfF~~  719 (868)
                      +|||+||+.||||||||||+++++++|||||||||||||+|+|+|||||+|+||++++++++++++.||+||++||||++
T Consensus       711 aTPi~ei~~lnIGSRPa~R~~~~~l~dLRAIPWVfsWtQ~R~~lPgWyG~GsAl~~~~~~~~~~~~~l~~my~~wpfF~~  790 (936)
T d1jqoa_         711 ATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRV  790 (936)
T ss_dssp             HSCCGGGGGGCCSCCC--------CTTCCSHHHHHHHHHTTCCHHHHTTHHHHHHHHHHHCTTHHHHHHHHHHHCHHHHH
T ss_pred             HhhHHHHhhccCCCCCccCCCCCCccccCcCchHHHHHHhhccchHHhhhHHHHHHHHhcCcccHHHHHHHHHcChHHHH
Confidence            99999999999999999999989999999999999999999999999999999999999888789999999999999999


Q ss_pred             HHHHHHHHHHhccHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchHHHHHHhhhhhhhhhHHH
Q 002903          720 TIDLVEMVFAKGNHKIAALYDQLLVSKDLWSFGEKLRVNYEETKGLLLQIAGHKDLLEGDPYLKQRLRLRDAYITTLNVC  799 (868)
Q Consensus       720 ~idnvem~LaKaD~~Ia~~Y~~l~~d~~~~~i~~~I~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~l  799 (868)
                      +|||++|+|+||||.||++|+++++|+++++||++|++||++|+++|++|||+++||+++|++++||++|||||||||++
T Consensus       791 ~l~n~~m~laK~d~~ia~~Y~~l~~d~~~~~~~~~i~~E~~~t~~~~l~it~~~~Ll~~~p~l~~si~~R~py~~pL~~~  870 (936)
T d1jqoa_         791 TLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVF  870 (936)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTSCSTTHHHHHHHHHHHHHHHHHHHHHHTCSSTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccChHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCccCCccchhhhhcccCCchhHHhhhccCCCCCcchHHHHHHHHHHHHhhhccCC
Q 002903          800 QAYTLKRIRDPNYHVKVRPHISREIMESESVKPADELVKLNLSSEYAPGLEDTLILTMKGIAAGLQNTG  868 (868)
Q Consensus       800 QvelL~r~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lTIngIAaGlrnTG  868 (868)
                      ||+||+|+|+.+......+..++...+   ++...++++.++.++.++.+.++|++|||||||||||||
T Consensus       871 Qv~lL~r~R~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~tingIAaGlrnTG  936 (936)
T d1jqoa_         871 QAYTLKRIRDPNFKVTPQPPLSKEFAD---ENKPAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG  936 (936)
T ss_dssp             HHHHHHHHHCTTCCCCCCCCCSCC----------CTTTTTSSSCSSCTTHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhcccccccccchhhhccc---ccchhhhhhcccccccchhHHHHHHHHHHHHHHHhccCC
Confidence            999999999854221100000000000   000124566677777789999999999999999999999

PyMOL of d1jqoa_

>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure