Citrus Sinensis ID: 002923

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-----
MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLEERNEMRLQQDSLLIETEQIEQQGSMVEGEKIRNCQDEISAAIQDKSIHSLDFILDGICSLFSDETSELIPKREIPSSGIESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKIENPDGLLRVSKENPNVVVDLFASNSDARKGKILEKENQRPLQKENELKDNPEVWSLELREIPSEIISEQLSNENQTLQSLAVLKPFSEIGNKGNSSVDQDWKSVVNQKSACFDEHCHPAALVYDEAENQSASRRDHRRNEIPSFDSGVLEAESVNSSFPFGEVFSEITDNNKCQTPQSHFAPGISSLENSESSPVRSDKSAALNSIWSRRGDCKNADVDLANLDDLENRSISNILFSGSEEMEEEIFTPEKENLTPNTLVSKSLLRKGKREEIKQFKSCRKSSSKVIFSPNIQPAEDLTLTSDKENQTFKVHREQKLMRGFYSNQVKLEQEWVLMKARAGERVPFQPLVNFPGKRRSEARSINSFSFSQTTEITNSSSVGEGRRGWTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREKYNRSSLKKPSKGGEGAKGLKLILLHNSHYAWINSSVLILL
ccccccccccEEEEEEcccccccEEEcccccccccccccccccccccccccccccccEEEccccccccccEEcccccEEEEccEEcEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEEcccHHHccccccccc
ccccccEEEEEEEEEccccccEEEEEEccccccccccccccccEEEcccccccEEccEEEcccccccccEEEEEEccEEEEccccEEEEEEEEEcccccccccccccccccHcHHHHHHHHHHHHHcHHHccHHHHHcHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccHHHHccccccEEEEEcHHccHHHHccccccHccccccccEEEEccccccHHHHHHHHHHHccccHHHHccccccccEEEccccccccHcHHHHccccccccccHEEEcccccccccccccccccccEEEcccccccccccccHHHHHHHHHcccccHHHccccccccccccHHHHHccccccccccEEccccccccccccccHHcccccccccccccHHHHHHHHHccccHcccccccccccccccccccccccccHHHcccccccccHccccccccccHcHHHHHHHHHcccccHcccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHcccHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHcccccEEEEEEcccEEHHHHHHcccccccHHHHHHHccccccccEEEcccccccccccHcHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHccccEEEEc
mlthpsisrfhlqiqsnpsslklSVIDLSSGNCLIFAFVTTFlssygsfpvgmvlhgtwvsekkiepgvpvemdegdtlkiggstrvyrlhwvpfsqaydmnnpfvspmdleeVENQGLEERNEMRLQQDSLLIETEQIEqqgsmvegekirNCQDEISAAIQDKSIHSLDFILDGICslfsdetselipkreipssgiesvdlslpvednfsvseeqqlgkenqipwhdSVKDYISkienpdgllrvskenpNVVVDLFasnsdarkgkilekenqrplqkenelkdnpevwslelreipsEIISEQLSNENQTLQSLAvlkpfseignkgnssvdQDWKSVVNqksacfdehchpaalvydeaenqsasrrdhrrneipsfdsgvleaesvnssfpfgevfseitdnnkcqtpqshfapgisslensesspvrsdksAALNSIWsrrgdcknadvdlanlddlenrsisnilfsgseemeeeiftpekenltpntlvSKSLLRKGKREEIKQFKscrkssskvifspniqpaedltltsdkenqtFKVHREQKLMRGFYSNQVKLEQEWVLMKAragervpfqplvnfpgkrrsearsinsfsfsqtteitnsssvgegrrgWTVVVDTSTLLDKESRKSLQLLQglkgtqlvipRMVTRELDCLKqrgnlfrrkSQVSSLLEWIEECMVKTKWWIHIQSSveegrpiaptppaspqsqfsigsgrfhcgsptlteivsptsedhILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESlvnpfserflwadssprgrtwsyldDVVLREKynrsslkkpskggegakgLKLILLHNSHYAWINSSVLILL
mlthpsisrfhLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKiepgvpvemdegdtLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLEERNEMRLQQDSLLIETEQIEQQGSMVEGEKIRNCQDEISAAIQDKSIHSLDFILDGICSLFSDETSelipkreipssgieSVDLSLPVEDNFSVSeeqqlgkenqipwhdSVKDYISKIENPDGLLRVSKENPNVVVDLfasnsdarkgkilekenqrplqkenelkdnpevWSLELREIPSEIISEQLSNENQTLQSLAVLKPFSEIGNKGNSSVDQDWKSVVNQKSACFDEHCHPAALVYDEAenqsasrrdhrrneipsfdsgvleAESVNSSFPFGEVFSEITDNNKCQTPQSHFAPGISslensesspvrsDKSAALNsiwsrrgdckNADVDlanlddlenrsISNILFSGSEEMEEEIftpekenltpntlvsksllrkgkreeikqfkscrkssskvifspniqpaedltltsdkenqTFKVHREQKLMRGFYSNQVKLEQEWVLMKAragervpfqplvnfpgkrrsearsinsfsfsqtteitnsssvgegrrgWTVVVDtstlldkesrkslqllqglkgtqlviprMVTRELDclkqrgnlfrrksqVSSLLEWIEECMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERflwadssprgrtwsylddvVLREkynrsslkkpskggegAKGLKLILLhnshyawinssVLILL
MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLEERNEMRLQQDSLLIETEQIEQQGSMVEGEKIRNCQDEISAAIQDKSIHSLDFILDGICSLFSDETSELIPKREIPSSGIESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKIENPDGLLRVSKENPNVVVDLFASNSDARKGKILEKENQRPLQKENELKDNPEVWSLELREIPSEIISEQLSNENQTLQSLAVLKPFSEIGNKGNSSVDQDWKSVVNQKSACFDEHCHPAALVYDEAENQSASRRDHRRNEIPSFDSGVLEAESVNSSFPFGEVFSEITDNNKCQTPQSHFAPGISSLENSESSPVRSDKSAALNSIWSRRGDCKnadvdlanlddlENRSISNILFSGSEEMEEEIFTPEKENLTPNTLVSKSLLRKGKREEIKQFKSCRKSSSKVIFSPNIQPAEDLTLTSDKENQTFKVHREQKLMRGFYSNQVKLEQEWVLMKARAGERVPFQPLVNFPGKRRSEARSINSFSFSQTTEITNSSSVGEGRRGWTVVVDTSTLLDKESRKSlqllqglkgtqlVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREKYNRSSLKKPSKGGEGAKGLKLILLHNSHYAWINSSVLILL
********************LKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPF************************************************CQDEISAAIQDKSIHSLDFILDGICSLFSD*******************************************PWHDSVKDYISKIENPDGLLRV*****NVVVDLF*******************************************************************************WKSVVNQKSACFDEHCHPAALVY**********************************************************************************IWS**GDCKNADVDLANLD*********IL*******************************************************************************QKLMRGFYSNQVKLEQEWVLMKARAGERVPFQPLVN*********************************RGWTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQ**************************RFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREK****************KGLKLILLHNSHYAWINSSVLIL*
*LTHPSISRFHLQIQSNPSS***********NCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLH*********************************************************************************************************************************************K*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLK*********SQVSSLLEWIEECMVKTKWWIHIQS****************************CGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREKY*******************LILLHNSHYAWINSSVLILL
MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLEERNEMRLQQDSLLIETEQIEQQGSMVEGEKIRNCQDEISAAIQDKSIHSLDFILDGICSLFSDETSELIPKREIPSSGIESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKIENPDGLLRVSKENPNVVVDLFASNSDARKGKILEKENQRPLQKENELKDNPEVWSLELREIPSEIISEQLSNENQTLQSLAVLKPFSEIGNKGNSSVDQDWKSVVNQKSACFDEHCHPAALVYDE************RNEIPSFDSGVLEAESVNSSFPFGEVFSEITDNNKCQTPQSHFAPGISS***************ALNSIWSRRGDCKNADVDLANLDDLENRSISNILFSGSEEMEEEIFTPEKENLTPNTLVSKSLLRKGKR***************VIFSPNIQPAEDLTLTSDKENQTFKVHREQKLMRGFYSNQVKLEQEWVLMKARAGERVPFQPLVNFPGKRRSEARSINSFSFSQT***********GRRGWTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQSSVEEGRPIA**********FSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREKYN************GAKGLKLILLHNSHYAWINSSVLILL
*LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLEER********SL******************IRNCQDEISAAIQDKSIHSLDFILDGICSLFSDETSELIPKREIPSSGIESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKIENPDGLLRVSKENPNVVVDLFASNSDARKGKILEKENQRPLQKENELKDNPEVWSLELREIPSEIISEQLSNENQTLQSLAVLKPFSEIGNKGNSSVDQDWKSVVNQKSACFDEHCHPAALVYDEAENQSAS******NEIPSFDSGVLEAESVNSSFPFGEVFSEIT************************************************************************EMEEEIFTPEKENLTPNTLVSKSLLRKG******************IFSPNIQPAEDLTLTSDK*N*TFKVHREQ*******************************************************************RRGWTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQSS*****************************SPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREKYNRSSLKKPSKGGEGAKGLKLILLHNSHYAWINSSVLILL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLEERNEMRLQQDSLLIETEQIEQQGSMVEGEKIRNCQDEISAAIQDKSIHSLDFILDGICSLFSDETSELIPKREIPSSGIESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKIENPDGLLRVSKENPNVVVDLFASNSDARKGKILEKENQRPLQKENELKDNPEVWSLELREIPSEIISEQLSNENQTLQSLAVLKPFSEIGNKGNSSVDQDWKSVVNQKSACFDEHCHPAALVYDEAENQSASRRDHRRNEIPSFDSGVLEAESVNSSFPFGEVFSEITDNNKCQTPQSHFAPGISSLENSESSPVRSDKSAALNSIWSRRGDCKNADVDLANLDDLENRSISNILFSGSEEMEEEIFTPEKENLTPNTLVSKSLLRKGKREEIKQFKSCRKSSSKVIFSPNIQPAEDLTLTSDKENQTFKVHREQKLMRGFYSNQVKLEQEWVLMKARAGERVPFQPLVNFPGKRRSEARSINSFSFSQTTEITNSSSVGEGRRGWTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEWIEECMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREKYNRSSLKKPSKGGEGAKGLKLILLHNSHYAWINSSVLILL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query865
296081164869 unnamed protein product [Vitis vinifera] 0.867 0.863 0.465 0.0
147859484828 hypothetical protein VITISV_010699 [Viti 0.831 0.868 0.437 1e-157
255571804789 conserved hypothetical protein [Ricinus 0.698 0.765 0.500 1e-153
224135491 1079 predicted protein [Populus trichocarpa] 0.749 0.600 0.488 1e-150
449516607872 PREDICTED: uncharacterized protein LOC10 0.864 0.857 0.372 1e-121
356502311 1198 PREDICTED: uncharacterized protein LOC10 0.428 0.309 0.547 1e-100
356561359 1198 PREDICTED: uncharacterized protein LOC10 0.428 0.309 0.545 1e-100
449443990 1040 PREDICTED: uncharacterized protein LOC10 0.484 0.402 0.498 1e-100
297846436 1452 forkhead-associated domain-containing pr 0.536 0.319 0.417 9e-85
18399229 1477 forkhead-associated (FHA) domain-contain 0.526 0.308 0.406 1e-84
>gi|296081164|emb|CBI18190.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/918 (46%), Positives = 529/918 (57%), Gaps = 168/918 (18%)

Query: 1   MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWV 60
           MLTHPSISRFHLQI SNP+  KLSV+DLSS                        +HGTWV
Sbjct: 59  MLTHPSISRFHLQIYSNPTLQKLSVMDLSS------------------------VHGTWV 94

Query: 61  SEKKIEPGVPVEMDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVENQGLE 120
           SEKKI+P   VE+ EGD +++G S+R+YRLHWVP SQAYD+ NPFVS  D+       +E
Sbjct: 95  SEKKIQPRARVELKEGDIIRLGSSSRIYRLHWVPLSQAYDLENPFVSASDVL------ME 148

Query: 121 ERNEMRLQQDSLLIETEQIEQQGSMVEGEKIRNCQDEISAAIQDKSIHSLDFILDGICSL 180
           E  E  + QD                            S ++  K I S   +L G+ S+
Sbjct: 149 EEKEDEIYQDV--------------------------SSFSVDSKEIQSQHPVLKGMESV 182

Query: 181 FSDETSELIPKREIPSSGIESVDLSLPVEDNFSVSEEQQLGKENQIPWHDSVKDYISKIE 240
           FSDE  E   ++ IPS+  E      P   N S S+E++   E  +P    V +   +IE
Sbjct: 183 FSDENCEPFVEKPIPSAPPE------PENMNSSASDEEKTEGEG-LP----VVEAFEEIE 231

Query: 241 NPDGLLRVSKENPNVVVDLFASNSDARKGKILEKENQRPLQKENELKDNPEVWSLELREI 300
           N         ++P        S  D  + +IL   N  P                   E+
Sbjct: 232 N---------QSP--------SRRDYEQTEILGAVNLLPSA-----------------EV 257

Query: 301 PSEIISEQLSNENQTLQSLAVLKPFSEIGNKGNSSVDQDWKSVVNQK------SACFDEH 354
             E  +EQL  E ++ Q L V    SE+ ++G + V    KS    K      S   D+ 
Sbjct: 258 LLETRNEQLDEEIKSPQPLFV----SEVFSQGETPVGLPTKSWQKSKLLGSLDSYVADDK 313

Query: 355 CHP--AALVYDEAENQSASRRDHRRNEIPSFDSGVLEAESVNSSFPFGEVFSEITD---N 409
                 A V +E ENQS  R+ + + E     SG +  ESVNSS P   + S+I +   +
Sbjct: 314 IEIPLVAEVLEEVENQSPPRKGYEQREASGLHSGAITTESVNSSVPDRNILSDIGNQQFS 373

Query: 410 NKCQTPQS-HFAPGISSLENSESSPVRSDKSAALNSIWSRRG------------------ 450
           N+ Q P+      G+S  EN ES PVR ++ ++L +IWSRRG                  
Sbjct: 374 NENQPPKPLPVTLGLSDDENPESPPVRLEQKSSLPNIWSRRGKPASVLQIQTGRSTRKCI 433

Query: 451 -DCKNADVDLANLDDLENRSISNILFSGSEEMEEEIFTPEKENLTPNTLVSKSL-LRKGK 508
            D   A +     +DLEN+ IS  LF   +  E EIFTP KEN +PNTL+ KS+  +KG 
Sbjct: 434 GDGNGAKIRKPKQEDLENKPISRALFPMLDGEETEIFTPNKENFSPNTLLLKSVNKKKGI 493

Query: 509 REEIKQFKSCRKSSSKVIFSPNIQPAEDLTLTSDKENQTFKVHREQKLMR----GFYSNQ 564
            EE KQ   CR SSSK    PN    ED +  SDKENQT +V + +K +R        N+
Sbjct: 494 LEETKQSTLCRSSSSKFSTGPNKCSEEDTSTFSDKENQTPQVLQTRKSVRPSPENSSRNR 553

Query: 565 VKLEQEWVLMKARAGERVPFQPLV-NFPGKRRSE-------ARSINSFSFSQTT-EITNS 615
            KLE+E ++MK R  ERVPF  L+ N   K +SE        RS NS + + TT   TNS
Sbjct: 554 GKLEKEIMVMK-RGAERVPFHSLLENAACKSKSEVSILGAKTRSSNSVNCTGTTGNATNS 612

Query: 616 S---SVGEGRRGWTVVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGN 672
           S   S GEG+R W +VVD + LL+KESRKSLQLLQGLKGTQL+IPRMV RELDCLK+RG+
Sbjct: 613 SFNNSAGEGKRRWNMVVDATCLLNKESRKSLQLLQGLKGTQLIIPRMVIRELDCLKRRGS 672

Query: 673 LFRRKSQVSSLLEWIEECMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRF--- 729
           LFRR S+VS +L+WIEECMVKTKWWIH+QSS+EEGRPIAPTPPASP  +FS GSG F   
Sbjct: 673 LFRRISEVSLVLQWIEECMVKTKWWIHVQSSIEEGRPIAPTPPASP-PRFSEGSGGFISG 731

Query: 730 --------HCGSPTLTEIVSPTSEDHILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEG 781
                    CGS  L EIVSPT+EDHIL+CAL FR++KND  LVL +NDVT+KIKAMAEG
Sbjct: 732 TTSSVPFSACGS--LMEIVSPTAEDHILECALFFRRIKNDGQLVLFTNDVTLKIKAMAEG 789

Query: 782 LICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLDDVVLREKYNRSSLKKPSKGGEGA 841
           L CET +EFRESLVNPFSERF+W+DSSPRG+TWSYLDDVVLREKY R  LKK SKGGE A
Sbjct: 790 LNCETVEEFRESLVNPFSERFMWSDSSPRGQTWSYLDDVVLREKYYRCPLKKASKGGESA 849

Query: 842 KGLKLILLHNSHYAWINS 859
           KGLKLILLHNSHY  I S
Sbjct: 850 KGLKLILLHNSHYGKIGS 867

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147859484|emb|CAN81434.1| hypothetical protein VITISV_010699 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255571804|ref|XP_002526845.1| conserved hypothetical protein [Ricinus communis] gi|223533849|gb|EEF35580.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224135491|ref|XP_002327231.1| predicted protein [Populus trichocarpa] gi|222835601|gb|EEE74036.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449516607|ref|XP_004165338.1| PREDICTED: uncharacterized protein LOC101227063 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502311|ref|XP_003519963.1| PREDICTED: uncharacterized protein LOC100793706 [Glycine max] Back     alignment and taxonomy information
>gi|356561359|ref|XP_003548950.1| PREDICTED: uncharacterized protein LOC100797723 [Glycine max] Back     alignment and taxonomy information
>gi|449443990|ref|XP_004139758.1| PREDICTED: uncharacterized protein LOC101215438 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297846436|ref|XP_002891099.1| forkhead-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336941|gb|EFH67358.1| forkhead-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18399229|ref|NP_564445.1| forkhead-associated (FHA) domain-containing protein [Arabidopsis thaliana] gi|212283380|gb|ACJ23185.1| parallel spindle 1 [Arabidopsis thaliana] gi|332193580|gb|AEE31701.1| forkhead-associated (FHA) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query865
TAIR|locus:5050061691477 PS1 "PARALLEL SPINDLE 1" [Arab 0.419 0.245 0.478 1.7e-106
CGD|CAL0003874 1404 PGA55 [Candida albicans (taxid 0.621 0.383 0.191 2e-05
UNIPROTKB|Q59SG9 1404 PGA55 "Flocculin-like protein" 0.621 0.383 0.191 2e-05
TAIR|locus:505006169 PS1 "PARALLEL SPINDLE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 771 (276.5 bits), Expect = 1.7e-106, Sum P(3) = 1.7e-106
 Identities = 192/401 (47%), Positives = 250/401 (62%)

Query:   471 SNILFSGSEEMEE-EIFTPEKENLTPNTLVSKSLLRKGKREEIKQFKSCRKSSSKVIFSP 529
             S+I    SE   E EIFTP+KENLTP++ + K L   G   +IK  K    SSSK    P
Sbjct:  1094 SSIAVLASEAFTEPEIFTPDKENLTPSSHMLKRLREFG---DIKDTKG---SSSKATRKP 1147

Query:   530 NIQPAEDLTLTSDKENQTFKVHREQKLMRGFYSNQVKLEQEWVLMKARAGERVPFQPLV- 588
                   D+ +   +EN    V +E + +    S   KL+ E +  K +A ER PFQPL+ 
Sbjct:  1148 FF----DIRM---EEN--VMVEQEPEDLHSLGSKS-KLKHEPLAPKKKA-ERAPFQPLLE 1196

Query:   589 --NFPGKRRSEARSINSFSFSQTTEITNSSSVGEGRRG--WTVVVDTSTLLDKESRKSXX 644
               +F  +  +EA S  S   + +  I +SS++ + +    WT+V+DTS+LLDKESRK   
Sbjct:  1197 KSSFQSQSYTEASSTASARNNISRGIRSSSNLSDAKSKMKWTIVLDTSSLLDKESRKPLQ 1256

Query:   645 XXXXXXXXXXVIPRMVTRELDCLKQ-RGNLFRRKSQV-SSLLEWIEECMVKTKWWIHIQS 702
                       V+PR V REL+ +K+ R  LFRR++++ SS L+WIEEC V +KWWI +QS
Sbjct:  1257 LLQGLKGTHLVVPRTVLRELNEVKRSRSFLFRRRTEIASSALDWIEECKVNSKWWIQVQS 1316

Query:   703 SVEEGRPIAPTPPASPQSQFSIGSGRF----HCGSPTLTEIVSPTSEDHILDCALLFRKM 758
               EE + IAPTPP +PQS    GS  F    H  +    EI SPTSED +L+CALL+R  
Sbjct:  1317 PTEETKAIAPTPPVTPQSN---GSSAFPFSLHWNNYA-PEIDSPTSEDQVLECALLYRNR 1372

Query:   759 KNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRESLVNPFSERFLWADSSPRGRTWSYLD 818
               D  LVLLSNDVT+KIKAMAEG+ICET  EF ESLVNPFSERF+W +S+ RGRTWS+LD
Sbjct:  1373 NRDEKLVLLSNDVTLKIKAMAEGVICETPHEFYESLVNPFSERFMWTESTARGRTWSHLD 1432

Query:   819 DVVLREKYNRSSLKKPS---KG--GEGAKGLKLILLHNSHY 854
             + VLRE+YN  + ++ S   +G  G  AKGLKLILLHNSHY
Sbjct:  1433 NDVLRERYNDRACRRKSTYNRGESGAAAKGLKLILLHNSHY 1473
GO:0005634 "nucleus" evidence=ISM
GO:0009555 "pollen development" evidence=IMP
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048451 "petal formation" evidence=RCA
GO:0048453 "sepal formation" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
CGD|CAL0003874 PGA55 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59SG9 PGA55 "Flocculin-like protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query865
cd09880139 cd09880, PIN_Smg5-Smg6-like, PIN domain 1e-27
pfam13638129 pfam13638, PIN_4, PIN domain 3e-25
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 1e-05
COG1875 436 COG1875, COG1875, NYN ribonuclease and ATPase of P 1e-05
pfam0049867 pfam00498, FHA, FHA domain 6e-05
>gnl|CDD|189050 cd09880, PIN_Smg5-Smg6-like, PIN domain Back     alignment and domain information 
 Score =  108 bits (273), Expect = 1e-27
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 29/167 (17%)

Query: 627 VVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLLEW 686
           +V+DT+ LL     K L+ L       +VIP  V +ELD LK+              + +
Sbjct: 2   LVLDTNVLLS--HLKLLRKLLESGELIVVIPYTVLQELDGLKKSPRR-ELGHLARRAIRF 58

Query: 687 IEECMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSED 746
           +E+ + K    +  Q+  E                              L      +++D
Sbjct: 59  LEDALKKGDPRLRGQTLTESLLA--------------------------LDGFDKRSNDD 92

Query: 747 HILDCALLFRKMKNDRCLVLLSNDVTMKIKAMAEGLICETAQEFRES 793
            ILDCAL F++      +VLL+ND  +++KA+A G+  E+ ++F   
Sbjct: 93  RILDCALYFQEQYPGEKVVLLTNDRNLRLKALAHGIPTESYEDFLPF 139

PIN (PilT N terminus) domain of nonsense-mediated decay (NMD) factors, Smg5 and Smg6, and homologs are included in this family. Smg5 and Smg6 are essential factors in NMD, a post-transcriptional regulatory pathway that recognizes and rapidly degrades mRNAs containing premature translation termination codons. In vivo, the Smg6 PIN domain elicits degradation of bound mRNAs, as well as, metal-ion dependent, degradation of single-stranded RNA, in vitro. These PIN domains are structural homologs of flap endonuclease-1 (FEN1)-like PIN domains, but lack the extensive arch/clamp region and the H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region, seen in FEN1-like PIN domains. Point mutation studies of the conserved aspartate residues in the catalytic center of the Smg6 PIN domain revealed that Smg6 is the endonuclease involved in human NMD. However, Smg5 lacks several of these key catalytic residues and does not degrade single-stranded RNA, in vivo. Eukaryotic Smg5 and Smg6-like PIN domains are present at the C-terminal end of telomerase activating proteins, Est1. Many of the bacterial homologs in this group have an N-terminal PIN domain and a C-terminal PhoH-like ATPase domain. Length = 139
>gnl|CDD|222278 pfam13638, PIN_4, PIN domain Back     alignment and domain information
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>gnl|CDD|224787 COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 865
KOG1881793 consensus Anion exchanger adaptor protein Kanadapt 100.0
COG1875 436 NYN ribonuclease and ATPase of PhoH family domains 99.93
PF13638133 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_ 99.91
KOG1882293 consensus Transcriptional regulator SNIP1, contain 99.61
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.29
KOG4689 479 consensus Predicted RNase [RNA processing and modi 99.22
PRK13764 602 ATPase; Provisional 99.05
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 98.76
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 98.67
cd00060102 FHA Forkhead associated domain (FHA); found in euk 98.67
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 98.53
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 98.5
smart00670111 PINc Large family of predicted nucleotide-binding 98.48
COG1412136 Uncharacterized proteins of PilT N-term./Vapc supe 98.21
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 98.14
COG3456430 Predicted component of the type VI protein secreti 97.55
COG4956356 Integral membrane protein (PIN domain superfamily) 96.73
TIGR00305114 probable toxin-antitoxin system toxin component, P 96.1
KOG1881793 consensus Anion exchanger adaptor protein Kanadapt 95.92
PF13470119 PIN_3: PIN domain 94.85
PRK04358217 hypothetical protein; Provisional 94.83
PRK12496164 hypothetical protein; Provisional 94.69
COG1855 604 ATPase (PilT family) [General function prediction 94.58
KOG4689 479 consensus Predicted RNase [RNA processing and modi 93.29
PF04900101 Fcf1: Fcf1; InterPro: IPR006984 This family is com 90.93
KOG02451221 consensus Kinesin-like protein [Cytoskeleton] 81.26
KOG0615475 consensus Serine/threonine protein kinase Chk2 and 80.95
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-43  Score=395.77  Aligned_cols=244  Identities=25%  Similarity=0.337  Sum_probs=201.5

Q ss_pred             CCCCCCCccceEEEEcCCCCc---------eEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecCCCCcee
Q 002923            2 LTHPSISRFHLQIQSNPSSLK---------LSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIEPGVPVE   72 (865)
Q Consensus         2 L~hPsiSR~Ha~i~~~~~~~~---------~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~~~~~~e   72 (865)
                      |.||||||+||++||.+++..         |+|+||+|                        |||||+|..|++|.+|++
T Consensus       191 ~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgs------------------------Thgt~~NK~rvppk~yir  246 (793)
T KOG1881|consen  191 LEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGS------------------------THGTFLNKDRVPPKVYIR  246 (793)
T ss_pred             cccCcccccceeeeccCCCCCccccCCCCceEEeeccc------------------------cccceeccccCCCcchhh
Confidence            789999999999999987555         99999999                        999999999999999999


Q ss_pred             cCCCCEEEEcCceeeEEEEeecccccccCCCCCCCCCChhhhhc-cCHHHHHHHHHH--HhHHH-----------HHHHh
Q 002923           73 MDEGDTLKIGGSTRVYRLHWVPFSQAYDMNNPFVSPMDLEEVEN-QGLEERNEMRLQ--QDSLL-----------IETEQ  138 (865)
Q Consensus        73 L~~gD~ikfG~str~y~l~~~p~~~~~d~~~p~~gP~~~~E~Es-~~~~e~ke~r~~--q~~~~-----------~e~e~  138 (865)
                      +++|++++||+|||+|+++               ||.++.|+|+ ++++|++++|++  +++..           ++++.
T Consensus       247 ~~Vg~v~~fggsTrl~i~Q---------------gp~eD~Epe~dls~te~~e~r~~~~E~~e~~~~~~~e~r~le~~q~  311 (793)
T KOG1881|consen  247 DRVGHVARFGGSTRLYIFQ---------------GPEEDEEPESDLSVTELKECREKKKELSDAEVEAAAEERILEAAQA  311 (793)
T ss_pred             hhHHHHHHhcCceEEEEee---------------CCCcCCCchhhcCHHHHHHHHHHHHhhhHhhhhhhHHHhhHHHHhh
Confidence            9999999999999999999               9999999999 999999999885  33322           11122


Q ss_pred             hhhcc-CccCCCCcccccc----cchhhhcccccccchhhhcc----cccccccCCCCcccccccCCCCeeEEEEecccc
Q 002923          139 IEQQG-SMVEGEKIRNCQD----EISAAIQDKSIHSLDFILDG----ICSLFSDETSELIPKREIPSSGIESVDLSLPVE  209 (865)
Q Consensus       139 ~e~~G-sWGmgeDa~ee~d----e~~~a~~~~e~~~~~~y~~D----L~~~FerEg~eley~~ee~~~g~~~crieLPv~  209 (865)
                      ...+| +|||||||+++++    .++.+..++|    ++|++|    |++||+|||++|+|+|+++++|.|+|+|+||++
T Consensus       312 ~~~~g~swGmgeDa~ed~~~e~et~~~~~~e~E----~~y~qdPkk~l~~ffereg~~l~~~~deq~~~~w~c~v~lp~~  387 (793)
T KOG1881|consen  312 DDEEGCSWGMGEDADEDDADEVETDAEAMEERE----ATYIQDPKKALLGFFEREGEDLEYEFDEQGHGKWVCRVELPVD  387 (793)
T ss_pred             hhhcCCcccCCcccccccccccccccccccccc----cccccCHHHHHHHHHHhhhhhhhhhhhhcCCceEEeeeeeecc
Confidence            34677 9999999998875    4677888888    999999    999999999999999999999999999999999


Q ss_pred             cCCCchhh--hhcCCCCCCCcchhhhh---hhhcccCCCCccccccCC-----CCcccccccCcch---hhhhhhhHhhh
Q 002923          210 DNFSVSEE--QQLGKENQIPWHDSVKD---YISKIENPDGLLRVSKEN-----PNVVVDLFASNSD---ARKGKILEKEN  276 (865)
Q Consensus       210 d~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lr~s~~~-----~~~~~d~~sS~~d---~~~~~i~~~~~  276 (865)
                      +.-|....  .-|-|.    ..+.+-+   .+|||+|.+|+||++.++     ++.+.|||+||+|   ||||.+..|+.
T Consensus       388 ~~~~~~~v~~~~~~g~----kke~~iqc~ldaCrild~~~llrk~~~erk~~k~~Ed~dfl~sded~fldrtg~vekk~~  463 (793)
T KOG1881|consen  388 DSGGARAVAEAAHSGE----KKEAFIQCALDACRILDTAGLLRKENHERKKGKNLEDEDFLDSDEDDFLDRTGLVEKKRA  463 (793)
T ss_pred             cccchhHHHHHhhhch----hHHHHHHHHHhhhhhccccchhhhhhHHHhhhcccccccccccccchhhcchhhhhhhhc
Confidence            98766542  222221    1122222   789999999999999877     7899999999987   99998875544


Q ss_pred             c---Cccc--ccccccCChhh
Q 002923          277 Q---RPLQ--KENELKDNPEV  292 (865)
Q Consensus       277 ~---~~~~--k~~~~~d~~E~  292 (865)
                      .   .+..  ...+..+++|.
T Consensus       464 ~kk~~~~sv~~~~e~~~~~es  484 (793)
T KOG1881|consen  464 KKKFAEESVGAIDEDPDKFES  484 (793)
T ss_pred             chhhhhccccccccCcccccc
Confidence            4   2322  34455778887

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>KOG4689 consensus Predicted RNase [RNA processing and modification] Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>smart00670 PINc Large family of predicted nucleotide-binding domains Back     alignment and domain information
>COG1412 Uncharacterized proteins of PilT N-term Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>PF13470 PIN_3: PIN domain Back     alignment and domain information
>PRK04358 hypothetical protein; Provisional Back     alignment and domain information
>PRK12496 hypothetical protein; Provisional Back     alignment and domain information
>COG1855 ATPase (PilT family) [General function prediction only] Back     alignment and domain information
>KOG4689 consensus Predicted RNase [RNA processing and modification] Back     alignment and domain information
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query865
2dok_A186 Telomerase-binding protein EST1A; telomerase-assoc 6e-18
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 2e-09
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 8e-08
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 5e-07
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 6e-07
3huf_A325 DNA repair and telomere maintenance protein NBS1; 7e-07
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 1e-06
2hwy_A164 Protein SMG5; RNA degradation, decay, NMD, EST1A, 1e-04
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 3e-04
3po8_A100 RV0020C protein, putative uncharacterized protein 6e-04
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A Length = 186 Back     alignment and structure
 Score = 81.7 bits (201), Expect = 6e-18
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 43/186 (23%)

Query: 627 VVVDTSTLLDKESRKSLQLLQGLKGTQLVIPRMVTRELDCLKQRGNLFRRKSQVSSLL-- 684
           +V DT+  +D     SL  L   +   LV+P +V  ELD L +      R    + ++  
Sbjct: 15  LVPDTNGFID--HLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQE 72

Query: 685 ------EWIEECMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTE 738
                 E++E+        +   +S   G  +      S      +G+            
Sbjct: 73  KARKSIEFLEQRFESRDSCLRALTSR--GNELESIAFRSEDITGQLGNN----------- 119

Query: 739 IVSPTSEDHILDCALLFRKMKND--------------RCLVLLSNDVTMKIKAMAEGLIC 784
                 +D IL C L + K K                R +VLL++D  +++KA+   +  
Sbjct: 120 ------DDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPV 173

Query: 785 ETAQEF 790
                F
Sbjct: 174 RDIPAF 179
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens} Length = 164 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query865
2dok_A186 Telomerase-binding protein EST1A; telomerase-assoc 99.94
2hwy_A164 Protein SMG5; RNA degradation, decay, NMD, EST1A, 99.85
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.73
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.5
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.49
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.47
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.42
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.38
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.34
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.31
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.31
3po8_A100 RV0020C protein, putative uncharacterized protein 99.3
3huf_A325 DNA repair and telomere maintenance protein NBS1; 99.29
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.29
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.26
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.26
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.25
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.24
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.22
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.22
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.21
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.2
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.19
3ix7_A134 Uncharacterized protein TTHA0540; unknown function 99.18
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.16
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.16
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.13
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.1
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.09
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.09
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 98.99
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 98.82
3i8o_A142 KH domain-containing protein MJ1533; APC89320.5, m 98.82
1o4w_A147 PIN (PILT N-terminus) domain; structural genomics, 98.57
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 98.34
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 98.22
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 98.07
2wp8_J 977 Exosome complex exonuclease DIS3; nucleus, hydrola 97.9
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 97.87
4a0e_A123 YSCD, type III secretion protein; transport protei 97.79
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 97.79
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 97.78
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 97.78
1wv3_A238 Similar to DNA segregation ATPase and related prot 96.76
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 96.14
1v96_A149 Hypothetical protein PH0500; rossmann fold, tRNA s 94.53
2fe1_A156 Conserved hypothetical protein PAE0151; PIN domain 92.32
2h1c_A139 Trafficking protein B; DNA binding, PIN domain, RH 83.61
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A Back     alignment and structure
Probab=99.94  E-value=4.1e-28  Score=237.62  Aligned_cols=149  Identities=24%  Similarity=0.302  Sum_probs=111.1

Q ss_pred             CCccEEEEEccceeccCCCchhHHHhhcccC---ceEEEehhHHHHHhccccCCccc--------chhhHHHHHHHHHHH
Q 002923          621 GRRGWTVVVDTSTLLDKESRKSLQLLQGLKG---TQLVIPRMVTRELDCLKQRGNLF--------RRKSQVSSLLEWIEE  689 (865)
Q Consensus       621 ~~rkk~fVLDTNVLLhdeslk~L~lL~~fke---~~VVIPiiVLEELDgLKKg~~l~--------rra~~ARrALrwLee  689 (865)
                      ..++++||||||||||+     |.+|+.|.+   +.||||++||+|||+||++.+..        ..+..||+|++||++
T Consensus         9 ~~~~~~~VlDTNvLl~~-----~~~l~~~~~~~~~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~   83 (186)
T 2dok_A            9 EIRPLFLVPDTNGFIDH-----LASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQ   83 (186)
T ss_dssp             EEEEEEEEECHHHHHHH-----HHHHHHHHHHTSSEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCEEEEEhHHHHcC-----HHHHHHHHcCCCeEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHH
Confidence            44678999999999999     888888864   99999999999999999987621        124579999999999


Q ss_pred             HHhccccceeccCcccCCcccCCCCCCCCCccccCCCcccccCCCCcccCCCCCCChHHHHHHHHHHHhcC---------
Q 002923          690 CMVKTKWWIHIQSSVEEGRPIAPTPPASPQSQFSIGSGRFHCGSPTLTEIVSPTSEDHILDCALLFRKMKN---------  760 (865)
Q Consensus       690 ~l~k~~~~IhVQSs~e~G~~Ia~tppasp~~~~~eg~~~f~~gt~~l~dl~s~tNDDrILdCAL~lq~~~~---------  760 (865)
                      ++.....+|++|+..  |..+..       ..+....          .......|||+||+||++|++.++         
T Consensus        84 ~~~~~~~~i~~~~~~--g~~l~~-------v~~~~~~----------~~~~~~~~D~~IL~~a~~l~~~~~~~~~~~~~~  144 (186)
T 2dok_A           84 RFESRDSCLRALTSR--GNELES-------IAFRSED----------ITGQLGNNDDLILSCCLHYCKDKAKDFMPASKE  144 (186)
T ss_dssp             HHHTTCTTEEEECTT--SCEESC-------CTTCCCC----------C----CCHHHHHHHHHHTTCCCCGGGGCCC---
T ss_pred             HHhhCCCeEEEEecc--Cccccc-------ccccccc----------cccCCCCccHHHHHHHHHHHHhccccccccccc
Confidence            887766788887653  222110       0000000          011245899999999999976532         


Q ss_pred             -----CCcEEEEECChhhhhhhhcCCccccchhhHHHh
Q 002923          761 -----DRCLVLLSNDVTMKIKAMAEGLICETAQEFRES  793 (865)
Q Consensus       761 -----~~~VVLVTkDiNLRIKA~AeGI~AEd~eeF~ds  793 (865)
                           ..+|||||||+|||+||.+.||+++++.+|.++
T Consensus       145 ~~~~~~~~vvLvTnD~nLr~KA~~~Gi~~~~~~~~~~~  182 (186)
T 2dok_A          145 EPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTW  182 (186)
T ss_dssp             CCCEEEEEEEEECCCHHHHHHHHHTTCCEECHHHHHHH
T ss_pred             ccccCCCcEEEEeCcHHHHHHHHHCCCeeCcHHHHHHH
Confidence                 347999999999999999999999999999865
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens} Back     alignment and structure
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus} Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii} Back     alignment and structure
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1 Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A Back     alignment and structure
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1 Back     alignment and structure
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 865
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 2e-05
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 2e-04
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 4e-04
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 26/87 (29%)

Query: 2   LTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVS 61
           +    IS  HL+I+S+  +    + DL S N                         T ++
Sbjct: 48  IKDAGISTKHLRIESDSGNWV--IQDLGSSNG------------------------TLLN 81

Query: 62  EKKIEPGVPVEMDEGDTLKIGGSTRVY 88
              ++P   V + +GD +K+G  T + 
Sbjct: 82  SNALDPETSVNLGDGDVIKLGEYTSIL 108
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query865
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.46
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.41
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.3
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.27
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.26
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.26
d1o4wa_125 Hypothetical protein AF0591 {Archaeon Archaeoglobu 99.2
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.1
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.08
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.07
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.05
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.01
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 98.96
d1v96a1148 Hypothetical protein PH0500 {Pyrococcus horikoshii 93.39
d2fe1a1130 Conserved hypothetical protein PAE0151 {Pyrobaculu 80.13
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinase associated protein phosphatase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=2.8e-14  Score=130.09  Aligned_cols=67  Identities=34%  Similarity=0.527  Sum_probs=60.6

Q ss_pred             CCCCCCCCccceEEEEcCCCCceEEEeCCCCCcccccceeccccccCCCCccccccceEEcCeecC--------CCCcee
Q 002923            1 MLTHPSISRFHLQIQSNPSSLKLSVIDLSSGNCLIFAFVTTFLSSYGSFPVGMVLHGTWVSEKKIE--------PGVPVE   72 (865)
Q Consensus         1 ~L~hPsiSR~Ha~i~~~~~~~~~~v~DL~S~~~~~~~~~~~~~~~~~~~~~~~~~nGT~vN~~rI~--------~~~~~e   72 (865)
                      +|.||+|||.||.|.+.+...+|+|.||+|                        +|||||||.+|.        ++.+++
T Consensus        43 ~l~d~~vSr~Ha~i~~~~~~~~~~v~DlgS------------------------~nGT~vNg~~i~~~~~~~~~~g~~~~   98 (122)
T d1mzka_          43 ALKDSEVSGKHAQITWNSTKFKWELVDMGS------------------------LNGTLVNSHSISHPDLGSRKWGNPVE   98 (122)
T ss_dssp             ECCCTTSSSEEEEEEEETTTTEEEEEETTC------------------------SSCCEETTEESSCCCTTTCCCCCCEE
T ss_pred             EECCCCcCccceEEEEeCCCCEEEEeeCCC------------------------CCceEECCEECcccccccccCCceEE
Confidence            478999999999999987668999999999                        999999999995        578899


Q ss_pred             cCCCCEEEEcCceeeEEEE
Q 002923           73 MDEGDTLKIGGSTRVYRLH   91 (865)
Q Consensus        73 L~~gD~ikfG~str~y~l~   91 (865)
                      |+.||+|+||.+++.|+-.
T Consensus        99 L~~gd~i~iG~~~~~~v~~  117 (122)
T d1mzka_          99 LASDDIITLGTTTKVYVRI  117 (122)
T ss_dssp             CCTTEEEECSSSCEEEEEE
T ss_pred             cCCCCEEEECCeEEEEEEE
Confidence            9999999999999988744
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v96a1 c.120.1.1 (A:2-149) Hypothetical protein PH0500 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2fe1a1 c.120.1.1 (A:1-130) Conserved hypothetical protein PAE0151 {Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure