Citrus Sinensis ID: 002941
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 863 | 2.2.26 [Sep-21-2011] | |||||||
| B0F481 | 833 | Bifunctional dethiobiotin | yes | no | 0.932 | 0.966 | 0.698 | 0.0 | |
| Q6ZKV8 | 821 | Bifunctional dethiobiotin | yes | no | 0.938 | 0.986 | 0.580 | 0.0 | |
| P22805 | 455 | Adenosylmethionine-8-amin | yes | no | 0.478 | 0.907 | 0.276 | 7e-35 | |
| P44426 | 430 | Adenosylmethionine-8-amin | yes | no | 0.404 | 0.811 | 0.282 | 2e-34 | |
| P57379 | 428 | Adenosylmethionine-8-amin | yes | no | 0.461 | 0.929 | 0.263 | 3e-34 | |
| O66557 | 453 | Adenosylmethionine-8-amin | yes | no | 0.470 | 0.896 | 0.273 | 7e-34 | |
| Q8A7T2 | 741 | Biotin biosynthesis bifun | yes | no | 0.434 | 0.506 | 0.277 | 4e-33 | |
| Q58696 | 461 | Adenosylmethionine-8-amin | yes | no | 0.499 | 0.934 | 0.263 | 8e-32 | |
| E6SRG2 | 744 | Biotin biosynthesis bifun | yes | no | 0.473 | 0.549 | 0.248 | 4e-31 | |
| P53555 | 448 | L-Lysine-8-amino-7-oxonon | yes | no | 0.508 | 0.979 | 0.265 | 5e-31 |
| >sp|B0F481|BIODA_ARATH Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=BIO3-BIO1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/827 (69%), Positives = 673/827 (81%), Gaps = 22/827 (2%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749
LLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK+I+WFKDP+TN
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN 726
Query: 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 809
HNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+GY SLYA SLL
Sbjct: 727 HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLL 786
Query: 810 KKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856
LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 787 IMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 833
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2 |
| >sp|Q6ZKV8|BIODA_ORYSJ Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Oryza sativa subsp. japonica GN=BIO3-BIO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/849 (58%), Positives = 612/849 (72%), Gaps = 39/849 (4%)
Query: 17 LLRLFHHSTFHPQPLD-------LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS 69
+LRL H+ H +PL+ P F ++ ANT +GKTLVSAGL +S L SP+ S
Sbjct: 1 MLRLLRHARRHSTSSSSSAAAAAVPLTSPAFAVFGANTGVGKTLVSAGLVASLLASPSPS 60
Query: 70 ANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLS 129
+ YLKP+QTG+P DSD+RF+F + P+L LRR L L+ + L A+ L
Sbjct: 61 PST-VAYLKPLQTGFPDDSDARFVFDRAPAL-LRR-----LRLAGGGASTRLVASNHTL- 112
Query: 130 SRDLPFQPQKFNSEMYD-LNFREENRIS--GEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
F S D L R++ ++ GEE LVC+T++AW E VSPHLAAER
Sbjct: 113 ----------FPSPAVDPLPERQDTVVNYGGEEGVEEKALVCRTVYAWREPVSPHLAAER 162
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E G V D +V + + L + E G E+ ++ETAGGVASPGPSG+LQCDLY
Sbjct: 163 E-GMPVEDEEVRWLVDRWLAE--------EDGGGEVWKVLETAGGVASPGPSGTLQCDLY 213
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
R RLP +LVGDGRLGGIS T+SAYE+L LRGYDV +V+ ED GL N+ L+SYLR RVP
Sbjct: 214 RSSRLPAVLVGDGRLGGISSTLSAYETLLLRGYDVGSVILEDRGLSNDRFLLSYLRKRVP 273
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
V VLPP+P+D +DL +WF ES + F SLK+ + +S R+QRL M +++ L WWPFT
Sbjct: 274 VHVLPPIPEDPKDDLTDWFSESSSAFSSLKDSLQSFHSRRVQRLNSMQRKSKYLLWWPFT 333
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QH LVP ++VTVIDSR GENFS Y+ K+K I QFDACASWWTQGPD+ LQIELARDMG
Sbjct: 334 QHDLVPVDSVTVIDSRFGENFSAYK-VKDKTIVPQFDACASWWTQGPDSNLQIELARDMG 392
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
Y AAR+GHVMFPENV+EPAL CAELLL GVGK WASR YFSDNGSTAIEIALKMAFRK++
Sbjct: 393 YAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEIALKMAFRKYA 452
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH ++VD +E + KVLAL GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGL
Sbjct: 453 CDHGIIVDSEKDIRSEGSVHFKVLALNGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGL 512
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTV++ N LSLP + + D F S E+F + RD+S A++Y SYISQ
Sbjct: 513 FLDPPTVYIKNKSANLSLPPSIMHDQLSSCDTCFSSLTEVFCKTRDTSSAANVYVSYISQ 572
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
L Q S I ALIIEPV+ AGGMH++DPLFQR+LVKEC+NRKIPVIFDEVFTGF
Sbjct: 573 QLSQYAMSNNSEHIAALIIEPVIQGAGGMHLIDPLFQRLLVKECKNRKIPVIFDEVFTGF 632
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726
WRLGVE+ ++LLGC PDI+CY KL+TGG++PLAATLAT +F++F DSKL ALLHGHSY
Sbjct: 633 WRLGVESASELLGCFPDISCYAKLMTGGIVPLAATLATEPIFEAFRSDSKLTALLHGHSY 692
Query: 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786
+AH +GC AA K+I+W+KDP TN NI +R L+ELWD L+ +SS V+RVV+LGTL
Sbjct: 693 TAHPMGCTAAVKAIQWYKDPSTNSNIDLDRMKLKELWDSALVNHLSSLPNVKRVVSLGTL 752
Query: 787 CAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLK 845
CAIEL+A G +AGY SLYA+SL+++LR ED +Y RPLGNVIYLMCGPC++ + C++ L K
Sbjct: 753 CAIELKAEGSDAGYASLYASSLIRQLREEDNIYARPLGNVIYLMCGPCTTQDSCTRQLAK 812
Query: 846 LYQRLEEFD 854
+++RL++ +
Sbjct: 813 VHRRLQKLN 821
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P22805|BIOA_LYSSH Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Lysinibacillus sphaericus GN=bioA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 216/492 (43%), Gaps = 79/492 (16%)
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACAS 407
Q L ++ ++ + W P +Q K EA I + GE +Y +Q +++ DA +S
Sbjct: 3 QVLTELQEKDLQHVWHPCSQMK--DYEAFPPIVIKKGEGVWLYDEQNQRYL----DAVSS 56
Query: 408 WWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
WW +++ + A H +F +EPA++ A+ L+ + + +F+
Sbjct: 57 WWV-NLFGHANPRISQALSEQAFTLEHTIFANFSHEPAIKLAQKLV-ALTPQSLQKVFFA 114
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS+AIE+ALKM+F+ T K + + LAL +YHG+TLGA+
Sbjct: 115 DNGSSAIEVALKMSFQYHM-------------QTGKTQKKRFLALTDAYHGETLGALSVG 161
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
V +YN + P L + + D C F
Sbjct: 162 G------------------------VDLYNEVY---QPLLLDTVRAQGPDCFRCP----F 190
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
DS I S++ L + I A+IIEP++ AA GM M ++ R L
Sbjct: 191 KHHPDSCHAQCI--SFVEDQLRMH-----HKEITAVIIEPLIQAAAGMKMYPAIYLRRLR 243
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C + +I DE+ GF R G + PD C K LTGG +PL+ + TN V
Sbjct: 244 ELCTQYDVHLIADEIAVGFGRTGTLFACEQANISPDFMCLSKGLTGGYLPLSVVMTTNDV 303
Query: 708 FDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766
+ +F D + +KA LH HSY+ + L C A + + F++ Q + + +R+L
Sbjct: 304 YQAFYDDYATMKAFLHSHSYTGNTLACRVALEVLAIFEEEQYIDVVQDKGERMRKL---- 359
Query: 767 LIQQISSHRTVQRVVALGTLCAIELQA---------AGCNAGYGSLYAASLLKKLREDGV 817
++ S V +G + AIEL A + GY +Y +L K G+
Sbjct: 360 ALEAFSDLPFVGEYRQVGFVGAIELVANRDTKEPLPSEERIGY-QIYKRALAK-----GL 413
Query: 818 YMRPLGNVIYLM 829
+RPLGNV+Y M
Sbjct: 414 LIRPLGNVLYFM 425
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Lysinibacillus sphaericus (taxid: 1421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P44426|BIOA_HAEIN Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 198/435 (45%), Gaps = 86/435 (19%)
Query: 402 FDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454
D +SWW P +A Q +LA+ H+MF ++PA+E A+LL+Q
Sbjct: 48 IDGMSSWWAALHGYNHPRLNAAAQNQLAK--------MSHIMFGGFTHDPAVELAQLLVQ 99
Query: 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514
+ G + +F+D+GS A+E+A+KMA + + H K ++ K ++
Sbjct: 100 ILPNG-LDKIFFADSGSVAVEVAMKMAIQ---YQH-------AKGEVQR---QKFATIRS 145
Query: 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574
YHGDT AM P+ TG +S + P +N W
Sbjct: 146 GYHGDTWNAMSVCDPT--TGMHHLFHHSLPVQYFLPQPNIPFNESW-------------- 189
Query: 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634
C+ + + +LL+ G + I ALI+EPVV AGG
Sbjct: 190 ----NDCAIEPL-------------------ADLLKKKGNE----IAALILEPVVQGAGG 222
Query: 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694
M+ P + C+ I +IFDE+ TGF R G A+ G PDI C GK LTGG
Sbjct: 223 MYFYSPTYLVKAQALCKQYGILLIFDEIATGFGRTGKLFAAEHAGISPDIMCIGKALTGG 282
Query: 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754
+ L+A++ T + + + + K +HG ++ A+ L CA AA+SI+ + NI
Sbjct: 283 YLTLSASITTTEIAQT-ICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNI-- 339
Query: 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE 814
+RI L + + +S V+ V ALG + +E+++A + +L+ + E
Sbjct: 340 -QRIESSL--KQQLSPLSEKDYVKEVRALGAIGVVEMKSA--------VNMKTLVPRFVE 388
Query: 815 DGVYMRPLGNVIYLM 829
GV++RP G ++Y+M
Sbjct: 389 QGVWIRPFGKLVYVM 403
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P57379|BIOA_BUCAI Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 128/485 (26%), Positives = 204/485 (42%), Gaps = 87/485 (17%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420
W P++ P TVI ++ VY KN+ D +SWW +
Sbjct: 13 IWHPYSSMN-NPHPCYTVISAK-----GVYLKLKNR--KYMIDGMSSWWAAIHGYNHPV- 63
Query: 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480
L + + + HVMF + PA+ L+ + + SD+GS AIE+A+KM
Sbjct: 64 LNKALKKQIRKMSHVMFGGITHPPAISLCRKLISLTPEKLDC-VFLSDSGSVAIEVAIKM 122
Query: 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540
+ + LG+ L ++ YHGDT AM P Q +
Sbjct: 123 LIQYW--------QALGQKRKL------FLTIRNGYHGDTFSAMSVSDPK---NSFHQIY 165
Query: 541 YS--GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
++ + LF D P FY+ D+ D+ S
Sbjct: 166 HNLLPKHLFADAPV--------------------------------SSFYKNWDNEDILS 193
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
+ +++ K++G +I+EP+V GGM+ P++ + + C + IPVI
Sbjct: 194 F------KKIIEKNSFKIAG----VILEPIVQGVGGMNFYHPMYLKQIKILCNHYSIPVI 243
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
FDE+ TGF R G + VPDI C GK +TGG I LAATL + + D+ + K+
Sbjct: 244 FDEIATGFGRTGKMFAFEHANVVPDILCLGKSITGGTITLAATLTSRHIADT-ISKGKVG 302
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP-ERRILRELWDLELIQQISSHRTV 777
+HG +Y + L CA A +IK K Q ++ E+++ + L L +H V
Sbjct: 303 CFMHGPTYMGNPLACAVANANIKILKTNQWKIQVLNIEKQLFKSLMPL------INHPYV 356
Query: 778 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPE 837
V LG + +E C+ S+ S+ K E+GV++RP +IY++ SP
Sbjct: 357 TDVRVLGAIGVVE-----CSR---SINMISIQKFFVENGVWIRPFKKLIYIVPPYIISPH 408
Query: 838 VCSQL 842
+L
Sbjct: 409 TLKKL 413
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 216/476 (45%), Gaps = 70/476 (14%)
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
E FW PFTQ K+ EE + + GE ++ K+I DA +S W
Sbjct: 15 EYFWHPFTQMKVYREEENLIFER--GEGVYLWDIYGRKYI----DAISSLWCN-VHGHNH 67
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
+L + + H + PA+ A+ L++ +G ++ ++S++G+ A+EIA+
Sbjct: 68 PKLNNAVMKQLCKVAHTTTLGSSNVPAILLAKKLVEISPEG-LNKVFYSEDGAEAVEIAI 126
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMA+ + K K + + L +YHGDT+GA+ + G +
Sbjct: 127 KMAYHYWK----------NKGVKGKNV---FITLSEAYHGDTVGAVSVGGIELFHGTYKD 173
Query: 539 PWYSGRGLFLDPPTVFMY-NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597
+ L P+ ++Y K+ PE + + +DI SR++I
Sbjct: 174 LLFKTIKL----PSPYLYCKEKYGELCPECTADLLKQLEDI-LKSREDIV---------- 218
Query: 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657
A+I+E + AA GM P F + + + + +
Sbjct: 219 ------------------------AVIMEAGIQAAAGMLPFPPGFLKGVRELTKKYDTLM 254
Query: 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SK 716
I DEV TGF R G + G PD C GK +TGG +PLAATL T+ VF++F+G+ +
Sbjct: 255 IVDEVATGFGRTGTMFYCEQEGVSPDFMCLGKGITGGYLPLAATLTTDEVFNAFLGEFGE 314
Query: 717 LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776
K HGH+Y+ + L C+ A +++ F++ +T + P+ ++L+ E +Q+ +
Sbjct: 315 AKHFYHGHTYTGNNLACSVALANLEVFEEERTLEKLQPKIKLLK-----ERLQEFWELKH 369
Query: 777 VQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829
V V LG + IEL + G YG + K RE GV++RPLG+V+ LM
Sbjct: 370 VGDVRQLGFMAGIELVKDKEKGEPFPYGERTGFKVAYKCREKGVFLRPLGDVMVLM 425
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q8A7T2|BIOAB_BACTN Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 126/454 (27%), Positives = 203/454 (44%), Gaps = 79/454 (17%)
Query: 402 FDACASWW--TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459
+ +SWW G + + + A+D + HVMF ++PA+E +LLL V
Sbjct: 362 IEGMSSWWCAVHGYNHPVLNQAAKDQ---LDKMSHVMFGGLTHDPAIELGKLLLPLVPPS 418
Query: 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519
+ +++D+GS A+E+ALKMA + + K + + ++ YHGD
Sbjct: 419 -MQKIFYADSGSVAVEVALKMAVQYWY-------------AAGKPDKNNFVTIRSGYHGD 464
Query: 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
T AM P TG S + P ++ +W + D
Sbjct: 465 TWNAM--SVCDPVTGMHSLFGSSLPVRYFVPAPSSRFDGEW--------------NPDEI 508
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
R+ I E+ S +LA ALI+EP+V AGGM
Sbjct: 509 IPLRETI---EKHSKELA------------------------ALILEPIVQGAGGMWFYH 541
Query: 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699
P + R K C+ I +IFDE+ TGF R G + G PDI C GK LTGG + L+
Sbjct: 542 PQYLREAEKLCKEHDILLIFDEIATGFGRTGKLFAWEHAGVEPDIMCIGKALTGGYMTLS 601
Query: 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759
A LA+N + D+ + + KA +HG ++ + L CA A S++ D N+ +RI
Sbjct: 602 AVLASNQIADT-ISNHAPKAFMHGPTFMGNPLACAVACASVRLLLDSGWAENV---KRI- 656
Query: 760 RELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM 819
+ +L ++++ R +V + L AI G S+ A + ++ E+G+++
Sbjct: 657 ----EAQLKEELAPARKFPQVADVRILGAI-----GVIQTERSVSMAYMQRRFVEEGIWV 707
Query: 820 RPLGNVIYLMCGPCSSPEVCSQL---LLKLYQRL 850
RP G ++YLM SPE S+L +LK+ + +
Sbjct: 708 RPFGKLVYLMPPFIISPEQLSKLTSGVLKIVREM 741
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q58696|BIOA_METJA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=bioA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 135/512 (26%), Positives = 228/512 (44%), Gaps = 81/512 (15%)
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--GPDAT 416
E W P+TQ K E +I+ GE + NK++ DA +S W G
Sbjct: 14 EYIWHPYTQMKEYRESKNLIIER--GEGNYLIDIYGNKYL----DAVSSIWCNLFGHSRK 67
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
IE ++ A + H P++ A+ L+ K ++ ++S++G+ A+EI
Sbjct: 68 EIIEAIKNQ---ADKICHSTLLGCGNVPSILLAKKLVDITPK-HLTKVFYSEDGAEAVEI 123
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFL 536
A+KMA++ + VL G+ K +++K YHGDT+GAM + G
Sbjct: 124 AIKMAYQYY-----VLRGDKGRT--------KFISVKEGYHGDTVGAMSVGGSELFHGVF 170
Query: 537 QQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596
+ + +G +PP + Y K+ H R+E E +++
Sbjct: 171 KPLLF--KGYHANPP--YCYRCKY--------------HNFKDTDERNEKGCEMECLNEM 212
Query: 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656
S+ + + + +I+E + + GM + + K C+ +
Sbjct: 213 ISLIEKHAEE-------------VFCVILEGGIMGSAGMIPYPDGYIEGVAKACKENDVI 259
Query: 657 VIFDEVFTGFWRLGVETTADLLGC---------VPDIACYGKLLTGGVIPLAATLATNAV 707
I DEV TGF R T + C PDI C GK LTGG +PLAATL T+ +
Sbjct: 260 FILDEVATGFGR-----TGKMFFCDNEELKKLEKPDILCLGKGLTGGYLPLAATLTTDEI 314
Query: 708 FDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL-RELWDL 765
++ F+G+ + K L HGH+Y+ + L C+AA +++ F+ NI P+ ++ +EL L
Sbjct: 315 YNQFLGEFGESKQLYHGHTYTGNQLLCSAALATLEIFEKENVIENIQPKIKLFHKELRKL 374
Query: 766 ELIQQISSHRTVQRVVALGTLCAIELQAA---GCNAGYGSLYAASLLKKLREDGVYMRPL 822
+ ++ + R +V + + E + G AGY + +KL E G+YMRP+
Sbjct: 375 KELEHVGDVRGRGFMVGIELVKDKETKEPYPYGYKAGY------RVAEKLLEKGIYMRPI 428
Query: 823 GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854
GNVI L+ + + L LY+ ++E D
Sbjct: 429 GNVIILVPPLSITEKEIIYLCDALYEAIKEAD 460
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|E6SRG2|BIOAB_BACT6 Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 128/515 (24%), Positives = 210/515 (40%), Gaps = 106/515 (20%)
Query: 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWW--------------TQGPDATLQIEL 421
+T I S+ E+ ++ ++ +F QFD W Q AT+ +E
Sbjct: 298 LTTIGSKVSEDKTLIEEAGYRFSDSQFDREHLWHPYTSTTDPLPVYKVEQAEGATITLES 357
Query: 422 ARDM------------GYT-----------AARFGHVMFPENVYEPALECAELLLQGVGK 458
+ + GY + HVMF +EPA+E +LLL V
Sbjct: 358 GQTLIEGMSSWWCAIHGYNNPVLNHAATEQIGKMSHVMFGGLTHEPAIELGKLLLPLVPP 417
Query: 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518
+ +++D+GS A+E+ALKMA + + GK +K + ++ YHG
Sbjct: 418 S-MQKIFYADSGSVAVEVALKMAVQYW----------YGKGKEKKN---NFVTIRSGYHG 463
Query: 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
DT AM P TG S + P Y+ W
Sbjct: 464 DTWNAM--SVCDPVTGMHSLFGSSLPIRYFAPQPRSRYDGDW------------------ 503
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
+ DS +L +I + + + ALI+EP+V AGGM
Sbjct: 504 ----------DAGDSMELQNIIEQHHEE-------------LAALILEPIVQGAGGMWFY 540
Query: 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPL 698
P + R + C+ + +IFDE+ TGF R G + G PDI C GK LTGG + L
Sbjct: 541 HPQYLREAARLCKQYGLLLIFDEIATGFGRTGKLFAWEHAGTEPDIMCIGKALTGGYMTL 600
Query: 699 AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758
+A L TN V D+ S +HG ++ + L CA A S++ P + R
Sbjct: 601 SAVLTTNEVADAISNHSP-GVFMHGPTFMGNPLACAVACASVRLLTSPVYDWQGKVNRIS 659
Query: 759 LRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY 818
++ +L +Q+ + V+ + A+G + E ++ A + ++ E+G++
Sbjct: 660 MQLREELAPARQLPQVKDVRILGAIGVIEVTE-----------NVDMAWMQRRFVEEGIW 708
Query: 819 MRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853
+RP G ++YLM PE ++L L + ++E
Sbjct: 709 VRPFGKLVYLMPPFIIEPEQLTKLTSGLIKIIKEM 743
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) (taxid: 693979) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P53555|BIOK_BACSU L-Lysine-8-amino-7-oxononanoate aminotransferase OS=Bacillus subtilis (strain 168) GN=bioK PE=1 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 136/513 (26%), Positives = 221/513 (43%), Gaps = 74/513 (14%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ +++ + W PFTQ K E + +I+S G +D K + +D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMKDYDENPL-IIESGTGIKV---KDINGK---EYYDGFSSVWLN 56
Query: 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471
+ EL + + H PA + AE L+ + +R ++SD+G+
Sbjct: 57 -VHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLID-ISPKKLTRVFYSDSGA 114
Query: 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531
A+EIALKMAF+ + +GK +K I A+K YHGDT+GA+ +
Sbjct: 115 EAMEIALKMAFQYWKN--------IGKPEKQKFI-----AMKNGYHGDTIGAVSVGSIEL 161
Query: 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591
+ + P ++Y S E D C RD+ E
Sbjct: 162 FHHVYGPLMFES----YKAPIPYVYRS---------------ESGDPDEC-RDQCLRE-- 199
Query: 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651
LA + + + I AL IE +V A GM ++ + + + C
Sbjct: 200 ----LAQLLEEHHEE-------------IAALSIESMVQGASGMIVMPEGYLAGVRELCT 242
Query: 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
+ +I DEV TGF R G + PD+ GK +TGG +P+A T AT ++ +F
Sbjct: 243 TYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF 302
Query: 712 VGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770
D LK HGHSY+ + LGCA A +++ F+ + + + L L+Q
Sbjct: 303 YDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLH-----FLLQD 357
Query: 771 ISSHRTVQRVVALGTLCAIEL-QAAGCNAGYGS----LYAASLLKKLREDGVYMRPLGNV 825
+ + V + LG +C EL ++ Y + Y SL K+RE G+ RPLG+V
Sbjct: 358 LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSL--KMRELGMLTRPLGDV 415
Query: 826 IYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858
I + S+ E S+++ + Q + E +E+
Sbjct: 416 IAFLPPLASTAEELSEMVAIMKQAIHEVTSLED 448
|
Catalyzes the transfer of the alpha-amino group from L-lysine to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). B.subtilis is the only bacterium known to utilize L-lysine as an amino donor in the biosynthesis of DAPA. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 863 | ||||||
| 225446128 | 863 | PREDICTED: uncharacterized protein LOC10 | 0.930 | 0.930 | 0.711 | 0.0 | |
| 297796671 | 839 | mitochondrial bifunctional diaminopelarg | 0.944 | 0.971 | 0.692 | 0.0 | |
| 186532546 | 833 | adenosylmethionine-8-amino-7-oxononanoat | 0.932 | 0.966 | 0.698 | 0.0 | |
| 390980932 | 831 | Chain A, Structure Of Bifunctional Dapa | 0.942 | 0.978 | 0.693 | 0.0 | |
| 356550752 | 819 | PREDICTED: l-Lysine-8-amino-7-oxononanoa | 0.909 | 0.958 | 0.691 | 0.0 | |
| 390980930 | 831 | Chain A, Structure Of Selenomethionine S | 0.945 | 0.981 | 0.678 | 0.0 | |
| 449457131 | 852 | PREDICTED: bifunctional dethiobiotin syn | 0.980 | 0.992 | 0.655 | 0.0 | |
| 449510662 | 844 | PREDICTED: LOW QUALITY PROTEIN: bifuncti | 0.971 | 0.992 | 0.654 | 0.0 | |
| 357145329 | 825 | PREDICTED: adenosylmethionine-8-amino-7- | 0.944 | 0.987 | 0.589 | 0.0 | |
| 326517942 | 827 | predicted protein [Hordeum vulgare subsp | 0.925 | 0.966 | 0.597 | 0.0 |
| >gi|225446128|ref|XP_002270551.1| PREDICTED: uncharacterized protein LOC100259784 [Vitis vinifera] gi|297735352|emb|CBI17792.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/817 (71%), Positives = 671/817 (82%), Gaps = 14/817 (1%)
Query: 40 FQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
+ IW++NT LGKTLVS GL+++ LLSP SS + KF+Y+KP+QTG+P DSDS F+F K
Sbjct: 55 YTIWASNTGLGKTLVSTGLAAATLLSPFPSSDSAKFIYIKPVQTGFPSDSDSAFVFRKFS 114
Query: 99 SLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGE 158
L LRR ++ SN +L +S AA++ L F + E+ DL EE R+ GE
Sbjct: 115 QLVLRRRPSFAVSASNHVLKASASAAEAVLG-----FGSEG-EGELRDLGAYEERRLLGE 168
Query: 159 E--DSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESE 216
E + SEL CKT++AW EA+SPHLA ERE GG V D ++E LG+CLR G SE
Sbjct: 169 EWAAGAASELTCKTMYAWREAISPHLAVERE-GGAVPDKVLLEVLGRCLRIG----SEDG 223
Query: 217 RGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276
RG+M++ +VETAGGVASPGPSG+LQCDLYRPFRLP ILVGDGRLGGISGTISAYESLKL
Sbjct: 224 RGRMDVWSVVETAGGVASPGPSGTLQCDLYRPFRLPAILVGDGRLGGISGTISAYESLKL 283
Query: 277 RGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLK 336
RGYDVVA+V EDHGLVNEVPL+SYL NRVPVLVLPP+PQD S++LMEWFD+S VF SLK
Sbjct: 284 RGYDVVAIVIEDHGLVNEVPLLSYLGNRVPVLVLPPVPQDPSDNLMEWFDKSQAVFSSLK 343
Query: 337 NIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNK 396
IML YSERIQR DMPKRAG++FWWPFTQHKLVPEE VTVIDSRCGENFSV++ Q N
Sbjct: 344 EIMLSVYSERIQRFHDMPKRAGDIFWWPFTQHKLVPEETVTVIDSRCGENFSVHKVQNND 403
Query: 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456
FI QQFDACASWWTQGPDATLQIELARD+GY AARFGHVMFPENVYEPALECAELLL+GV
Sbjct: 404 FIAQQFDACASWWTQGPDATLQIELARDVGYAAARFGHVMFPENVYEPALECAELLLEGV 463
Query: 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516
GKGWASR +FSDNGSTAIE+ALKMAFRKFS DH +++D +T K IE+KV+ALKGSY
Sbjct: 464 GKGWASRTFFSDNGSTAIEVALKMAFRKFSLDHGIILDSTDPNTIGKFIEVKVIALKGSY 523
Query: 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576
HGDTLGAMEAQAPS YTGFLQQPWY+G+GLFLDPPT+FM + W LSLPE + S+ ++ +
Sbjct: 524 HGDTLGAMEAQAPSSYTGFLQQPWYTGKGLFLDPPTIFMCDGIWKLSLPEGVQSEKLKQE 583
Query: 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636
++TF SR E F + RD S LA YSS+ISQ L GL+ G IGALIIEPVVH +GGMH
Sbjct: 584 ELTFQSRGEFFSKSRDGSSLAGSYSSFISQQLSAYSGLRGFGHIGALIIEPVVHGSGGMH 643
Query: 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
M+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLG E+ ++LL C PDIAC+ KL+TGG+I
Sbjct: 644 MIDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGAESASELLCCQPDIACFAKLMTGGII 703
Query: 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756
PLAATLAT+AVF++F GDSKLKALLHGHSY+AHA+GC AA KSIKWFKDPQTN NI E
Sbjct: 704 PLAATLATDAVFNAFAGDSKLKALLHGHSYTAHAMGCTAAVKSIKWFKDPQTNSNITSEG 763
Query: 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816
R+LRELWD EL+ QISSH VQRVVALGTL A+ELQA G N GYGSLYA SLL KLREDG
Sbjct: 764 RLLRELWDAELVHQISSHPAVQRVVALGTLFALELQAEGSNVGYGSLYARSLLLKLREDG 823
Query: 817 VYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853
VY+RPLGNVIYLMCGPC+SPE CSQLL+KLY+RLEEF
Sbjct: 824 VYLRPLGNVIYLMCGPCTSPETCSQLLIKLYRRLEEF 860
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796671|ref|XP_002866220.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297312055|gb|EFH42479.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1162 bits (3007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/839 (69%), Positives = 683/839 (81%), Gaps = 24/839 (2%)
Query: 21 FHHSTFHPQP---LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77
F+ + P P + LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YL
Sbjct: 22 FNSTAVSPPPTHSIHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYL 81
Query: 78 KPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQP 137
KPIQTG+P DSDSRF+F+KL SLSLRR P L +SNS+L SSL AA+S L
Sbjct: 82 KPIQTGFPSDSDSRFVFSKLDSLSLRRQIP--LSISNSVLRSSLPAAES------LGLNV 133
Query: 138 QKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197
+ ++ M +LNFREE ++G EL+CKTL+AWE A+SPHLAAERE+ + DS V
Sbjct: 134 EVSDTGMCNLNFREEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TIEDSIV 187
Query: 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVG 257
+ + KCL++ +E S SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVG
Sbjct: 188 LRMIEKCLKEEMECGSRSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVG 245
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
DGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D
Sbjct: 246 DGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDP 305
Query: 318 SNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVT 377
S+DL+EWF ES+ VF +LK M+LAY R++RL M K+AG++FWWPFTQHKLV EE VT
Sbjct: 306 SDDLIEWFVESNGVFKALKETMVLAYLGRLERLNSMAKQAGKVFWWPFTQHKLVHEETVT 365
Query: 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437
VIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMF
Sbjct: 366 VIDSRCGENFSIYKASDNSSLTQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMF 425
Query: 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
PENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH DF
Sbjct: 426 PENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----DFCE 481
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
K EK I +KVLAL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 482 KREEEKHIVVKVLALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 541
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W + LPE +S+I + TF RDEIF E RD++ LA IYS+Y+S++L ++ G++ S
Sbjct: 542 GAWNIFLPE-CFSEIAPEECGTFSIRDEIFDESRDATTLARIYSAYVSEHLQEDSGVRQS 600
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETTA+L
Sbjct: 601 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTAEL 660
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAA 737
L C PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AA
Sbjct: 661 LDCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 720
Query: 738 KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 797
K+I+WFKDP+TNHNI + + LRELWD EL+QQIS H VQRVV LGTL A+EL+A N
Sbjct: 721 KAIQWFKDPETNHNITSQGKTLRELWDDELVQQISFHSAVQRVVVLGTLFALELKADASN 780
Query: 798 AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856
+GY SLYA SLL+ LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 781 SGYASLYAKSLLEMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 839
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186532546|ref|NP_200567.2| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|391737955|sp|B0F481.1|BIODA_ARATH RecName: Full=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial; AltName: Full=Bifunctional BIO3-BIO1 protein; Includes: RecName: Full=Dethiobiotin synthetase; AltName: Full=DTB synthetase; Short=DTBS; AltName: Full=Protein BIOTIN AUXOTROPH 3; Includes: RecName: Full=7,8-diamino-pelargonic acid aminotransferase; Short=DAPA AT; Short=DAPA aminotransferase; AltName: Full=7,8-diaminononanoate synthase; Short=DANS; AltName: Full=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; AltName: Full=Diaminopelargonic acid synthase; AltName: Full=Protein BIOTIN AUXOTROPH 1; Flags: Precursor gi|158726301|gb|ABW80569.1| mitochondrial bifunctional diaminopelargonate synthase-dethiobiotin synthetase [Arabidopsis thaliana] gi|332009541|gb|AED96924.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|364285679|gb|AEW48251.1| bifunctional BIO3-BIO1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/827 (69%), Positives = 673/827 (81%), Gaps = 22/827 (2%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749
LLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK+I+WFKDP+TN
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN 726
Query: 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 809
HNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+GY SLYA SLL
Sbjct: 727 HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLL 786
Query: 810 KKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856
LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 787 IMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 833
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980932|pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980933|pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980934|pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980935|pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980936|pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980937|pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980938|pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb). gi|390980939|pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb) | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/835 (69%), Positives = 675/835 (80%), Gaps = 22/835 (2%)
Query: 22 HHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81
H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQ
Sbjct: 19 HMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQ 78
Query: 82 TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFN 141
TG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 79 TGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSE 130
Query: 142 SEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETL 201
S M LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ +
Sbjct: 131 SGMCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMI 184
Query: 202 GKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRL 261
KCL++ +E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRL
Sbjct: 185 EKCLKEEMECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRL 242
Query: 262 GGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDL 321
GGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL
Sbjct: 243 GGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDL 302
Query: 322 MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDS 381
+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDS
Sbjct: 303 IEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDS 362
Query: 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV 441
RCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENV
Sbjct: 363 RCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENV 422
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501
YEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F
Sbjct: 423 YEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEE 478
Query: 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W
Sbjct: 479 EKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +G
Sbjct: 539 ISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVG 596
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
ALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC
Sbjct: 597 ALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 656
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741
PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK+I+
Sbjct: 657 PDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ 716
Query: 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801
WFKDP+TNHNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+GY
Sbjct: 717 WFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYA 776
Query: 802 SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856
SLYA SLL LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 777 SLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNRT 831
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550752|ref|XP_003543748.1| PREDICTED: l-Lysine-8-amino-7-oxononanoate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/824 (69%), Positives = 664/824 (80%), Gaps = 39/824 (4%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLS-PTSSANKKFVYLKPIQTGYPHDSDSR 91
LPLSHP + IW +NT +GKTLVSAG++++FLLS PT S +F YLKP+QTG+P DSDSR
Sbjct: 29 LPLSHPIYLIWGSNTGVGKTLVSAGIAAAFLLSSPTPS---QFHYLKPLQTGFPSDSDSR 85
Query: 92 FLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFRE 151
F+F KL LSL RN L S+ ++ S S
Sbjct: 86 FVFNKLRQLSLIRNPHIPLSASHRVINVSPAVTAS------------------------- 120
Query: 152 ENRISGEED-SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLE 210
N ++GEE EL+CKTL+AWEEAVSPHLAAERE G VV DS V+ETLG+CL D E
Sbjct: 121 -NPLAGEEGVGPPPELLCKTLYAWEEAVSPHLAAERE-GLVVKDSAVLETLGECLEDVAE 178
Query: 211 SESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270
+ ER E+LC+VETAGGVASPGPSGSLQCDLYRPFR+P +LVGDGRLGGISGTISA
Sbjct: 179 CGAGKERS--EVLCVVETAGGVASPGPSGSLQCDLYRPFRIPAVLVGDGRLGGISGTISA 236
Query: 271 YESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHN 330
YESLKLRGYDVVAVVFEDHGL+NE PLMSY+RN+VPVLVLPP+P+D NDLMEWF+ SH
Sbjct: 237 YESLKLRGYDVVAVVFEDHGLLNEGPLMSYMRNKVPVLVLPPIPKDPLNDLMEWFESSHY 296
Query: 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVY 390
+F +LK IML AY ERI++L DMP+ A ++ WWPFTQHKLVP+ VTVIDSRCGENFS++
Sbjct: 297 IFSNLKEIMLSAYFERIKKLHDMPREARDIIWWPFTQHKLVPDGGVTVIDSRCGENFSIF 356
Query: 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAE 450
+ QK + I QFDACASWWTQGPDA +Q ELAR+MGY AARFGHVMFPENV+EPAL CAE
Sbjct: 357 KVQKTEVIAPQFDACASWWTQGPDAIMQTELAREMGYAAARFGHVMFPENVHEPALNCAE 416
Query: 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510
LLLQGVGKGWASR YFSDNGSTAIEIALKMAFRKFS DH ++V T E+ EL VL
Sbjct: 417 LLLQGVGKGWASRTYFSDNGSTAIEIALKMAFRKFSVDHGLIVHCHEDTTNERSTELMVL 476
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
AL+ SYHGDTLGAMEAQAPS YTGFLQQPWY+GRGLFLDPP+VFM+NS W +S+PE +
Sbjct: 477 ALQRSYHGDTLGAMEAQAPSSYTGFLQQPWYTGRGLFLDPPSVFMHNSTWNVSIPEGYHL 536
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ ++ K TF S DEIF++ RD S+LA++YSSYIS+ L G + S +GALI+EPV+
Sbjct: 537 ESLKGK--TFASPDEIFHKGRDKSELATVYSSYISKVL---SGFRGSNNVGALIMEPVIQ 591
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHMVDPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVET +L+ CVPDIAC+GKL
Sbjct: 592 GAGGMHMVDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGVETAVELIHCVPDIACFGKL 651
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750
LTGG+IPLA TLATNAVFDSF+GDSKLKALLHGHSYSAHA+GCAAA KSI+WFKDP +N
Sbjct: 652 LTGGIIPLAVTLATNAVFDSFIGDSKLKALLHGHSYSAHAMGCAAAVKSIQWFKDPCSNP 711
Query: 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLK 810
NI E R+LRELWD +++ +ISSH +QRVVALGTLCA+EL+A G NAGYGSLYA LL+
Sbjct: 712 NITSEGRLLRELWDDKMVHRISSHPAIQRVVALGTLCALELKAEGNNAGYGSLYARPLLE 771
Query: 811 KLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854
KLREDGVYMRPLGNVIYL+CGPC+SPEVC+QLL+KL +RLEEFD
Sbjct: 772 KLREDGVYMRPLGNVIYLLCGPCTSPEVCNQLLVKLLRRLEEFD 815
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980930|pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980931|pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form | Back alignment and taxonomy information |
|---|
Score = 1130 bits (2922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/838 (67%), Positives = 663/838 (79%), Gaps = 22/838 (2%)
Query: 19 RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLK
Sbjct: 16 RGSHXKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75
Query: 79 PIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQ 138
PIQTG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 76 PIQTGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVE 127
Query: 139 KFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198
S LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V+
Sbjct: 128 VSESGXCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVL 181
Query: 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD 258
+ + KCL++ E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGD
Sbjct: 182 QXIEKCLKEEXECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGD 239
Query: 259 GRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSS 318
GRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S
Sbjct: 240 GRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPS 299
Query: 319 NDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTV 378
+DL+EWF ES VF +LK +LA ER++RL K AGE+FWWP+TQHKLV +E VTV
Sbjct: 300 DDLIEWFVESDGVFKALKETXVLANLERLERLNGXAKLAGEVFWWPYTQHKLVHQETVTV 359
Query: 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438
IDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+ GYTAARFGHV FP
Sbjct: 360 IDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREXGYTAARFGHVXFP 419
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
ENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALK AFRKF DH +F
Sbjct: 420 ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDH----NFCEA 475
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
EK I +KV+AL+GSYHGDTLGA EAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S
Sbjct: 536 SWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSA 593
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+GALIIEPV+H AGG H VDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LL
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
GC PDIAC+ KLLTGG +PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA GCA AAK
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAK 713
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+I+WFKDP+TNHNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNS 773
Query: 799 GYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856
GY SLYA SLL LREDG++ RPLGNVIYL CGPC+SPE+C +LL KLY+RL EF++
Sbjct: 774 GYASLYAKSLLIXLREDGIFTRPLGNVIYLXCGPCTSPEICRRLLTKLYKRLGEFNRT 831
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457131|ref|XP_004146302.1| PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1117 bits (2888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/865 (65%), Positives = 669/865 (77%), Gaps = 19/865 (2%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK+A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKKAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + ++ + +VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIHDAQECNADAQRNLPFQVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 526
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + + ++ F SRDE+F E+RD SDLA
Sbjct: 527 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPETLRLENAFFDSRDEVFDEKRDGSDLAE 586
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 587 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 644
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSKL+
Sbjct: 645 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSKLE 704
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
ALLHGHSYSAHALGC AAAKSIKWFK+ QTN NI E LRELWD L+ +ISSH V+
Sbjct: 705 ALLHGHSYSAHALGCTAAAKSIKWFKNSQTNLNINAEGTSLRELWDENLVYEISSHPAVK 764
Query: 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEV 838
RVVALGTL A+ELQA G NAGY SLYA SLL KLREDG+Y RPLGNVIYLMCGPC+ P+
Sbjct: 765 RVVALGTLFALELQADGSNAGYASLYARSLLLKLREDGIYTRPLGNVIYLMCGPCTKPDS 824
Query: 839 CSQLLLKLYQRLEEF-DKVEEKLKS 862
CSQLL+KL L++F + E L+S
Sbjct: 825 CSQLLIKLLGGLDDFISESRENLES 849
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510662|ref|XP_004163726.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/865 (65%), Positives = 663/865 (76%), Gaps = 27/865 (3%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKXAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + D + + EL VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIH-DAQECNADAQRSELMVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 525
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + T + +F E+RD SDLA
Sbjct: 526 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPE-------TLRLENALFDEKRDGSDLAE 578
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 579 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 636
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSKL+
Sbjct: 637 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSKLE 696
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
ALLHGHSYSAHALGC AAAKSIKWFK+ QTN NI E LRELWD L+ +ISSH V+
Sbjct: 697 ALLHGHSYSAHALGCTAAAKSIKWFKNSQTNLNINAEGTSLRELWDENLVYEISSHPAVK 756
Query: 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEV 838
RVVALGTL A+ELQA G NAGY SLYA SLL KLREDG+Y RPLGNVIYLMCGPC+ P+
Sbjct: 757 RVVALGTLFALELQADGSNAGYASLYARSLLLKLREDGIYTRPLGNVIYLMCGPCTKPDS 816
Query: 839 CSQLLLKLYQRLEEF-DKVEEKLKS 862
CSQLL+KL L++F + E L+S
Sbjct: 817 CSQLLIKLLGGLDDFISESRENLES 841
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357145329|ref|XP_003573605.1| PREDICTED: adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/850 (58%), Positives = 623/850 (73%), Gaps = 35/850 (4%)
Query: 14 RRILL-----RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTS 68
RR+LL R + S+F LPL+ PTF ++ ANT +GKTLVSAGL++S L SPT+
Sbjct: 3 RRLLLAHARRRRHYSSSFSSA---LPLASPTFAVFGANTGVGKTLVSAGLAASLLRSPTA 59
Query: 69 SANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFL 128
S + +YLKP+QTG+P DSD+ FLF ++P+L LR + + L+ S L S
Sbjct: 60 SPSA-VLYLKPLQTGFPADSDAGFLFRRVPAL-LRPSTAARLVASLDTLSCSPSLEPPPP 117
Query: 129 SSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES 188
S + F +GE ++ L C+TL+AW EAVSPHLA ERE
Sbjct: 118 SPEEAAFS------------------YAGEGETVRKILTCRTLYAWREAVSPHLAVERE- 158
Query: 189 GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRP 248
G V D+ V L CL + G+ E+ ++ETAGGVASPGPSG+LQCDLYRP
Sbjct: 159 GMAVEDAHVRSRLAACL----VEGEDLGEGEGEVWKLIETAGGVASPGPSGTLQCDLYRP 214
Query: 249 FRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVL 308
FRLP ILVGDGRLGGIS T+SAYE+L LRGYD+ AV+ ED GL N++ L+SYLRNRVPVL
Sbjct: 215 FRLPTILVGDGRLGGISSTLSAYETLLLRGYDISAVILEDRGLSNDMFLLSYLRNRVPVL 274
Query: 309 VLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH 368
VLPP+P+D S+DL +W ES +VF LK+ + +S RIQRL M +++ +L WWPFTQH
Sbjct: 275 VLPPIPEDPSDDLTDWLSESSSVFGLLKDALQSFHSRRIQRLNSMQRKSKDLLWWPFTQH 334
Query: 369 KLVPEEAVTVIDSRCGENFSVYQDQKNKFIG-QQFDACASWWTQGPDATLQIELARDMGY 427
LVP ++VTVIDSRCGE+FS Y+ + NK + QFDACASWWTQGPD+ LQ+ELARDMGY
Sbjct: 335 NLVPVDSVTVIDSRCGESFSTYKVKDNKMMMIPQFDACASWWTQGPDSNLQMELARDMGY 394
Query: 428 TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487
A R+GHVMFPEN +EPAL CAELLL GVGK WASR Y+SDNGSTAIEIALKMAFRKFSF
Sbjct: 395 AAGRYGHVMFPENAHEPALRCAELLLGGVGKDWASRVYYSDNGSTAIEIALKMAFRKFSF 454
Query: 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547
DH +L+D T E+ I+LKVLAL+GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLF
Sbjct: 455 DHGILLDSDKSMTNERNIQLKVLALQGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLF 514
Query: 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
LDPPTVF+ N LSLP+ + + D S E+F RDSS A +YS+YISQ
Sbjct: 515 LDPPTVFIRNETCCLSLPQSIQHGHLSPGDKCIPSLAEVFCNTRDSSYAADLYSTYISQQ 574
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
L + + + ALIIEPV+ AGGMHM+DPLFQR+LVKEC+NRKIPVIFDEVFTGFW
Sbjct: 575 LSEYSLSSNTEHVAALIIEPVIQGAGGMHMIDPLFQRLLVKECRNRKIPVIFDEVFTGFW 634
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727
RLGVE+ ++LLGC+PDIACY KL+TGG++PLAAT+ T VF++F DSKL ALLHGHSY+
Sbjct: 635 RLGVESASELLGCLPDIACYAKLMTGGIVPLAATVTTEGVFEAFKSDSKLTALLHGHSYT 694
Query: 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787
AHA+GC+AA K+I+WF+DP TN N+ +R+ L+ELWD L+ Q+SS V RVV+LGTLC
Sbjct: 695 AHAMGCSAAVKAIQWFRDPSTNLNLDLDRKRLKELWDGTLVNQLSSLPNVSRVVSLGTLC 754
Query: 788 AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKL 846
AIEL+A G +AGY SLYA L+++LR ED +Y+RPLGNVIYLMCGPC++ + C++ L K+
Sbjct: 755 AIELKAEGSDAGYASLYARCLIQQLREEDDLYVRPLGNVIYLMCGPCTARDSCTEQLSKV 814
Query: 847 YQRLEEFDKV 856
Y+R+ F+ V
Sbjct: 815 YRRISSFNPV 824
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326517942|dbj|BAK07223.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/827 (59%), Positives = 612/827 (74%), Gaps = 28/827 (3%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRF 92
LPLS PTF ++ ANT +GKTLVSAGL++S L S ++ +YLKP+QTG+P DSD+ F
Sbjct: 23 LPLSSPTFAVFGANTGVGKTLVSAGLAASLLRS-HAAFPSAVLYLKPLQTGFPDDSDAGF 81
Query: 93 LFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREE 152
L+ ++P+L LR + + L S L + S + F YD
Sbjct: 82 LYRRVPAL-LRPSHAAHLAASIDTLSPAPSVETQSPSREEAAFS--------YD------ 126
Query: 153 NRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESE 212
GE ++ L C+TL+AW EAVSPHLAAERE G V D+ V L CL +G
Sbjct: 127 ----GEGEAVRKLLACRTLYAWREAVSPHLAAERE-GMAVEDAHVRSLLAACLVEG---- 177
Query: 213 SESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272
+G+ ++ +VETAGGVASPGPSG+LQCDLYR FRLP ILVGDGRLGGIS T+SAYE
Sbjct: 178 ENLGKGEGDVWKLVETAGGVASPGPSGTLQCDLYRQFRLPTILVGDGRLGGISCTLSAYE 237
Query: 273 SLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVF 332
+L LRGYDV AV+ EDHGL N L+SYLRNRVPVLVLPP+P+D S+DL +WF ES +VF
Sbjct: 238 TLLLRGYDVSAVILEDHGLSNNKFLLSYLRNRVPVLVLPPIPEDPSDDLTDWFSESSSVF 297
Query: 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQD 392
L++ + + RIQRL M +++ +L WWPFTQH LVP + VTVIDSRCGE+FS Y+
Sbjct: 298 GLLEDALRSFHLTRIQRLNSMQRKSKDLLWWPFTQHNLVPVDCVTVIDSRCGESFSAYKV 357
Query: 393 QKNKFIG-QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAEL 451
+ NK + QFDACASWWTQGPD+ LQIELARDMGY AAR+GHVMFPEN +EPAL CAEL
Sbjct: 358 KDNKMMMIPQFDACASWWTQGPDSKLQIELARDMGYAAARYGHVMFPENAHEPALRCAEL 417
Query: 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE-KCIELKVL 510
LL G+GK WASR Y+SDNGSTAIEIALKMAFRKFS D +L+D T + I+LKVL
Sbjct: 418 LLGGIGKDWASRVYYSDNGSTAIEIALKMAFRKFSLDRGILLDSDKSIITNGRNIQLKVL 477
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
ALKGSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLFLDPPTVF+ N LSLP+ + +
Sbjct: 478 ALKGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLFLDPPTVFIKNGTCTLSLPQAIQN 537
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ D F S E+F + RDSS A +YS+YISQ L + + I ALIIEPV+
Sbjct: 538 CHLSPGDKCFPSLAEVFCKTRDSSSAADLYSTYISQQLSEYSLSSNTEHIAALIIEPVIQ 597
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHM+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVE+ ++LLGC+PD+ACY KL
Sbjct: 598 GAGGMHMIDPLFQRVLVHECRDRKIPVIFDEVFTGFWRLGVESASELLGCLPDVACYAKL 657
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750
+TGG++PLAAT+ T AVF++F DSKL ALLHGHSY+AHA+GC+AA K+I+WF+DP TN
Sbjct: 658 MTGGLVPLAATVTTEAVFEAFKSDSKLTALLHGHSYTAHAMGCSAAVKAIQWFRDPSTNS 717
Query: 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLK 810
N+ + L+ELWD L+ Q+SS V+R+V+LGTLCAIELQA G +AGY SLYA SL++
Sbjct: 718 NLDFDCMKLKELWDGTLVNQLSSLPNVKRIVSLGTLCAIELQAEGSDAGYASLYARSLIQ 777
Query: 811 KLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856
+LR ED +Y+RPLGNVIYLMCGPC++ +VC++ L K+Y+R+ F+ V
Sbjct: 778 QLREEDDIYVRPLGNVIYLMCGPCTTRDVCTEQLSKVYRRISHFNPV 824
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 863 | ||||||
| TAIR|locus:2174532 | 833 | BIO1 "AT5G57590" [Arabidopsis | 0.811 | 0.840 | 0.689 | 1.1e-266 | |
| ASPGD|ASPL0000002022 | 787 | biA [Emericella nidulans (taxi | 0.451 | 0.495 | 0.398 | 5e-102 | |
| TIGR_CMR|NSE_0618 | 447 | NSE_0618 "adenosylmethionine-8 | 0.268 | 0.519 | 0.359 | 9.5e-44 | |
| TIGR_CMR|ECH_0666 | 426 | ECH_0666 "adenosylmethionine-8 | 0.228 | 0.462 | 0.350 | 1.3e-32 | |
| TIGR_CMR|BA_4341 | 462 | BA_4341 "adenosylmethionine--8 | 0.269 | 0.504 | 0.309 | 1.2e-30 | |
| TIGR_CMR|CJE_0352 | 427 | CJE_0352 "adenosylmethionine-- | 0.257 | 0.519 | 0.320 | 4.8e-30 | |
| TIGR_CMR|GSU_1582 | 453 | GSU_1582 "adenosylmethionine-- | 0.238 | 0.454 | 0.341 | 5.3e-30 | |
| TIGR_CMR|CPS_2593 | 446 | CPS_2593 "adenosylmethionine-8 | 0.224 | 0.434 | 0.339 | 1.3e-28 | |
| CGD|CAL0002562 | 433 | orf19.2591 [Candida albicans ( | 0.225 | 0.450 | 0.309 | 1.3e-26 | |
| UNIPROTKB|Q5A975 | 433 | BIO31 "Putative uncharacterize | 0.225 | 0.450 | 0.309 | 1.3e-26 |
| TAIR|locus:2174532 BIO1 "AT5G57590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2565 (908.0 bits), Expect = 1.1e-266, P = 1.1e-266
Identities = 492/714 (68%), Positives = 573/714 (80%)
Query: 142 SEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETL 201
S M LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ +
Sbjct: 133 SGMCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMI 186
Query: 202 GKCLRDGLESESESERGKMEILCIVETXXXXXXXXXXXXLQCDLYRPFRLPGILVGDGRL 261
KCL++ +E +SE K ++LC+VET LQCDLYRPFRLPGILVGDGRL
Sbjct: 187 EKCLKEEMECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRL 244
Query: 262 GGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRXXXXXXXXXXQDSSNDL 321
GGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+ +D S+DL
Sbjct: 245 GGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDL 304
Query: 322 MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDS 381
+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDS
Sbjct: 305 IEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDS 364
Query: 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV 441
RCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENV
Sbjct: 365 RCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENV 424
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501
YEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F
Sbjct: 425 YEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEE 480
Query: 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W
Sbjct: 481 EKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 540
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+SLPE +S+I TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +G
Sbjct: 541 ISLPE-SFSEIAPEYG-TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVG 598
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
ALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC
Sbjct: 599 ALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 658
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741
PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSYSAHA+GCA AAK+I+
Sbjct: 659 PDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ 718
Query: 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801
WFKDP+TNHNI + + LRELWD EL+QQISSH VQRVV +GTL A+EL+A N+GY
Sbjct: 719 WFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYA 778
Query: 802 SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855
SLYA SLL LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KLY+RL EF++
Sbjct: 779 SLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNR 832
|
|
| ASPGD|ASPL0000002022 biA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 5.0e-102, Sum P(3) = 5.0e-102
Identities = 174/437 (39%), Positives = 239/437 (54%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVY--- 390
SL + ++L +R++ L +M RA + W+PFTQH + + +T IDS + F Y
Sbjct: 245 SLLDELVLKNKQRVEYLDEMASRAQKTIWYPFTQHHGMAAKDITPIDSAYDDFFQTYVTA 304
Query: 391 -QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
+ + + FD ASWWTQG LA Y A R+GHVMFP N++EPAL A
Sbjct: 305 DRSAQQGRLQATFDGSASWWTQGLGHG-NPGLALSAAYAAGRYGHVMFPGNIHEPALALA 363
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
E LL+ V + +++DNGST +E+ALKM R D G D +++ ++ +
Sbjct: 364 ESLLKTVDNPRLQKVFYTDNGSTGMEVALKMGLR-------AACDRYGWDASKE--QINI 414
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
L LKGSYHGDT+G M+ PS Y ++ WY GRG + D P V M W + +P L
Sbjct: 415 LGLKGSYHGDTIGVMDCSEPSTYNQRVE--WYRGRGHWFDFPLVKMSQGVWQVEVPATLQ 472
Query: 570 SKIVEHKDITFCSRDEIF-YEERDSSDLASIYSSYISQN---LLQNPGLKVSGCIGALII 625
+ + ++ F S D +F E R SD Y YI + L+ G K GALI+
Sbjct: 473 ASLGGNQQ--FSSLDAVFDVESRVRSDAGQRYRKYILETIERLVTQEGKK----FGALIM 526
Query: 626 EPVVHAAGGMHMVDPLFQRILVKECQ------NRK---------------IPVIFDEVFT 664
EP++ AGGM DPLFQR L + NR +PVIFDEVFT
Sbjct: 527 EPIILGAGGMLFCDPLFQRCLADVVRGNPQLFNRGRLTEPQPQTDLSWSGLPVIFDEVFT 586
Query: 665 GFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGH 724
G +RLG +++A LG PDIA KLLTGG++PL TLA+N +F++F K ALLHGH
Sbjct: 587 GLYRLGRKSSASFLGVNPDIAVNAKLLTGGLVPLCTTLASNEIFNAFTSPEKRDALLHGH 646
Query: 725 SYSAHALGCAAAAKSIK 741
SY+AHA+GC A S++
Sbjct: 647 SYTAHAVGCQVALDSLR 663
|
|
| TIGR_CMR|NSE_0618 NSE_0618 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 9.5e-44, Sum P(2) = 9.5e-44
Identities = 88/245 (35%), Positives = 129/245 (52%)
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
QN L+ +V+G I EP+V AGGM M + VK + I IFDE+ TG
Sbjct: 204 QNFLEQNLNRVAG----FIAEPLVQGAGGMRMCRYKYLEQCVKLFKEYGILTIFDEIMTG 259
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHS 725
F+R G +D + PDI C K LTGG +PL+ T+ T V+++F+ D+ AL+H HS
Sbjct: 260 FYRTGKMFASDYILSKPDILCLSKGLTGGFLPLSLTITTERVYNAFLSDNFSSALIHSHS 319
Query: 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE-LWDLEL-IQQISSHRTVQRVVAL 783
Y+ + LGCAAA S++ K T I ++ R + DL+L + +I +RV
Sbjct: 320 YTGNPLGCAAAIASLELLKSTSTLDKIAKIEQLHRSFICDLKLTLPEIIK---AERVC-- 374
Query: 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLL 843
GT+ A L + CN Y A L + ++G+ +RPLGN IYLM C S + +
Sbjct: 375 GTIVAFNLFSEECN--YNHTIAVKLREIFMKEGLLIRPLGNTIYLMPPYCISEKALKEAH 432
Query: 844 LKLYQ 848
K+ +
Sbjct: 433 CKVME 437
|
|
| TIGR_CMR|ECH_0666 ECH_0666 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 74/211 (35%), Positives = 118/211 (55%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP++ AAGGM + + + + ++ + I DEV TGF RLG +
Sbjct: 203 VAAIILEPILQAAGGMLIHSASTVKKICEIARDNNMLFIADEVATGFGRLGTMFGCNQAD 262
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
VPDI GK LTGG LAATL T V+++F+ D+ A +HG ++ A+AL CAAA S
Sbjct: 263 IVPDIMVIGKALTGGFCTLAATLTTEEVYNAFLSDNIDDAFMHGPTFMANALACAAANAS 322
Query: 740 IKWFKDPQTNHNI-IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+ F++ N+ + E +++ EL E+ +Q+S + T RV G IEL++
Sbjct: 323 LDLFENQDLIQNVSLIENQLISEL---EIFRQLS-YVTDIRVK--GATGIIELES----- 371
Query: 799 GYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829
G + ++ K E +++RP+ NVIY+M
Sbjct: 372 --GLINKNDIISKGVELNIWIRPINNVIYIM 400
|
|
| TIGR_CMR|BA_4341 BA_4341 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 75/242 (30%), Positives = 123/242 (50%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EP++ AGGM + + R L C + I DEV TGF R G +
Sbjct: 226 IAAIIVEPLMQGAGGMITMPKGYLRGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHEN 285
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAK 738
PDI GK LTGG +P+A T+ T+ ++++F+G + K HGHSY+ + LGCA A
Sbjct: 286 VTPDILTAGKGLTGGYLPVAITVTTDEIYNAFLGSYEEQKTFFHGHSYTGNPLGCAVAIA 345
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL--QAAGC 796
+++ ++ +TN +I E E +L +++ + + V + G + IEL
Sbjct: 346 NLELYE--KTN--LIEEVARKTEYVATQL-EELFACKHVGDIRQCGLMVGIELVKNKETK 400
Query: 797 NA-GYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855
A + + K+ RE G+ +RPLGN I M S+ + ++L LY+ + + +
Sbjct: 401 EAFEWTERVGVQVCKRSRELGMILRPLGNTIVFMPPLASTIDEIDEMLRILYKAISDITE 460
Query: 856 VE 857
E
Sbjct: 461 GE 462
|
|
| TIGR_CMR|CJE_0352 CJE_0352 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 4.8e-30, Sum P(2) = 4.8e-30
Identities = 76/237 (32%), Positives = 112/237 (47%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A I+EP+V AG MHM + F +K C + VIFDE+ GF R G T L
Sbjct: 203 ICAFILEPLVQCAGNMHMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTG--TLFALHQ 260
Query: 680 CV--PDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAA 736
C PD C K +TGG +PL+ L + ++++F KA LH HSY+ + L CAAA
Sbjct: 261 CKQSPDFICLSKGITGGFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAA 320
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796
+ F+D NI+ + +IL E E ++ + G + A ++
Sbjct: 321 NAVLDIFED----ENILVKNQILSEFIKKEF-SRLEKFDFLGNFRTCGMISAFDI----L 371
Query: 797 NAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853
+ Y + + +K E G+ +RPL N IY M + E +L L Q +EF
Sbjct: 372 STKYKRV-GLFVFQKALEKGLLLRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF 427
|
|
| TIGR_CMR|GSU_1582 GSU_1582 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 74/217 (34%), Positives = 116/217 (53%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPL-FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+G + L+IEP+V AGGM +V P F + + + C I +I DEV GF R G
Sbjct: 215 AGEVAGLVIEPLVQGAGGM-IVQPEGFLKGVRELCDRHDILMIADEVAVGFGRTGAMFAC 273
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCA 734
G PDI K +T G +PLAATLAT V+D+F+G+ + +K HGH+++ + LGCA
Sbjct: 274 GREGITPDIMALSKGITAGYMPLAATLATQQVYDAFLGEYREMKTFFHGHTFTGNPLGCA 333
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL--- 791
A S+ F+ + + + ++L+E L+ + ++ H V V G + A+EL
Sbjct: 334 VALASLDLFESDRLLGKLPNKIKLLQE--KLKGLIELE-H--VGDVRQCGMIAAVELVRD 388
Query: 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 828
+A + + + R GV++RPLGNVI +
Sbjct: 389 RATKEPFDWEERVGVRVCLEARTHGVFLRPLGNVIVI 425
|
|
| TIGR_CMR|CPS_2593 CPS_2593 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 72/212 (33%), Positives = 102/212 (48%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A IIEP+V GGM P + + C + +I DE+ TGF R G + G
Sbjct: 222 IAAFIIEPIVQGTGGMRFYHPEYLKACRLLCDKYDVLLIVDEIATGFGRTGKLFACEWAG 281
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C GK LTGG I LAATL T + + + + +HG ++ +AL CA A S
Sbjct: 282 INPDIMCLGKTLTGGYITLAATLCTTHIAQT-ISEGAAGCFMHGPTFMGNALACAVANAS 340
Query: 740 IKWF--KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 797
I D Q+ I E ++ L LE H V+ LG++ AIE C
Sbjct: 341 IDLLLENDWQSQVQAI-ENTLVSHLKPLE------KHARVKDTRVLGSIGAIE-----CK 388
Query: 798 AGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829
++ A + K+ E GV++RP G +IY++
Sbjct: 389 Q---NVNVAQIQKRFVELGVWIRPFGQLIYII 417
|
|
| CGD|CAL0002562 orf19.2591 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 66/213 (30%), Positives = 113/213 (53%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EPV+ AGGM P + + + + C + ++ DE+ TGF R G + G
Sbjct: 209 IAAVILEPVLQGAGGMRTYHPQYLKRVRELCDKYNVLLVLDEIATGFGRTGKLFAQEHAG 268
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C GK +TGG + LAA ++T V + G + +HG ++ A+ CA + ++
Sbjct: 269 ICPDIMCVGKAITGGYLTLAAVISTRNVANVISG-GRTGCFMHGPTFMANPAACAVSVRN 327
Query: 740 IKWFKDP--QTN-HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796
++ K +T HNI +IL++ + L++ S HR ++ + LG + IE+
Sbjct: 328 LEIIKTGAWETQVHNI---EKILQKKFK-PLME--SGHRKIKEIRVLGAVGVIEMN---- 377
Query: 797 NAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829
N +LY S + + GV++RP G ++Y+M
Sbjct: 378 NQIDVALYQKSFV----DLGVWVRPFGKLLYIM 406
|
|
| UNIPROTKB|Q5A975 BIO31 "Putative uncharacterized protein BIO31" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 66/213 (30%), Positives = 113/213 (53%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EPV+ AGGM P + + + + C + ++ DE+ TGF R G + G
Sbjct: 209 IAAVILEPVLQGAGGMRTYHPQYLKRVRELCDKYNVLLVLDEIATGFGRTGKLFAQEHAG 268
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C GK +TGG + LAA ++T V + G + +HG ++ A+ CA + ++
Sbjct: 269 ICPDIMCVGKAITGGYLTLAAVISTRNVANVISG-GRTGCFMHGPTFMANPAACAVSVRN 327
Query: 740 IKWFKDP--QTN-HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796
++ K +T HNI +IL++ + L++ S HR ++ + LG + IE+
Sbjct: 328 LEIIKTGAWETQVHNI---EKILQKKFK-PLME--SGHRKIKEIRVLGAVGVIEMN---- 377
Query: 797 NAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829
N +LY S + + GV++RP G ++Y+M
Sbjct: 378 NQIDVALYQKSFV----DLGVWVRPFGKLLYIM 406
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0F481 | BIODA_ARATH | 2, ., 6, ., 1, ., 6, 2 | 0.6989 | 0.9327 | 0.9663 | yes | no |
| Q6ZKV8 | BIODA_ORYSJ | 2, ., 6, ., 1, ., 6, 2 | 0.5806 | 0.9385 | 0.9866 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.3.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 863 | |||
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 0.0 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 6e-84 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 1e-76 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 2e-71 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 3e-52 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 6e-47 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 1e-43 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 1e-42 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 6e-41 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 5e-40 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 2e-37 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 5e-35 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 1e-30 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 4e-26 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 8e-24 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 2e-23 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 2e-23 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 3e-21 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 2e-20 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 6e-19 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 1e-18 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 3e-18 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 2e-17 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 2e-16 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 1e-15 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 2e-15 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 5e-15 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 6e-15 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 1e-14 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 1e-14 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 2e-14 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 4e-14 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 5e-14 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 6e-14 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 5e-13 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 6e-13 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 2e-12 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 4e-12 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 5e-12 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 7e-11 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 3e-10 | |
| PRK00090 | 222 | PRK00090, bioD, dithiobiotin synthetase; Reviewed | 3e-10 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 5e-10 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 8e-10 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 1e-09 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 2e-09 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-09 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 7e-09 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 8e-09 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 8e-09 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 1e-08 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 2e-08 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 2e-08 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 5e-08 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 5e-08 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 1e-07 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 2e-07 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 2e-07 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 2e-07 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 2e-07 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 4e-07 | |
| TIGR00347 | 166 | TIGR00347, bioD, dethiobiotin synthase | 4e-07 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 6e-07 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 6e-07 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 9e-07 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 9e-07 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 1e-06 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 1e-06 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 2e-06 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 4e-05 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 4e-05 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 7e-05 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-04 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 1e-04 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 2e-04 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 2e-04 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 3e-04 | |
| cd03109 | 134 | cd03109, DTBS, Dethiobiotin synthetase (DTBS) is t | 5e-04 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 8e-04 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 0.001 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 0.002 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 0.002 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 0.003 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 1287 bits (3333), Expect = 0.0
Identities = 505/844 (59%), Positives = 606/844 (71%), Gaps = 33/844 (3%)
Query: 14 RRILLRLFHHSTFHPQPL---DLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA 70
+L L LPLS P F +W ANT++GKTLVSAGL+++ +S
Sbjct: 1 LHMLRSLIGLRRRSSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAA-----AASR 55
Query: 71 NKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSS 130
+Y+KP+QTG+P DSD+RF+F K SLS R SL SN LF S AAKS L
Sbjct: 56 RSPVLYVKPVQTGFPDDSDARFVFRKADSLSRRS---ESLFASNRTLFLSPPAAKSALG- 111
Query: 131 RDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190
+N E ++ S L C TLFAW AVSPHLAA RE G
Sbjct: 112 ------GVSSMGAHAAVNAGAEAGVTS------SALWCHTLFAWRRAVSPHLAARRE-GR 158
Query: 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFR 250
V D +V+E + + LR+ +E G +L +VETAGGVASPGPSG+LQCDLYRP R
Sbjct: 159 GVSDDEVLEAVNRSLRE----VGANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLR 214
Query: 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVL 310
LP ILVGDGRLGGIS T++AYESL LRGYDVVAVV EDHGL NE L+SYL NRVPV VL
Sbjct: 215 LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVL 274
Query: 311 PPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKL 370
PP+P+D +DL EWFD+S + FD+L + + +S R+QRL MPK AGE+ WWPFTQH L
Sbjct: 275 PPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSGRLQRLQSMPKEAGEVLWWPFTQHAL 334
Query: 371 VPEEAVTVIDSRCGENFSVYQDQKN--KFIGQQFDACASWWTQGPDATLQIELARDMGYT 428
VP ++VTVIDSRCGE+FSVY+ + N I QQFDACASWWTQGPD TLQ ELAR + Y
Sbjct: 335 VPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYA 394
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A R+GHVMFPENV+EPAL AELLL G GKGWASR +FSDNGSTAIE+ALKMAFRKF D
Sbjct: 395 AGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVD 454
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
H L + + IELKVLAL GSYHGDTLGAMEAQAPS +TGFLQQPWYSGRGLFL
Sbjct: 455 HGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFL 514
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
DPPTV M N +W +SLPE S + ++ T+ SRDE+F + RDS+ LA Y SYI Q L
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEG-EETTWESRDEVFDKTRDSTPLAKAYRSYIEQQL 573
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
+ +G I ALIIEPV+H AGGM ++DPLFQR LV+ C++RKIPVIFDEVFTG WR
Sbjct: 574 DEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR 633
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728
LGVE+ +LLGC PDIACY KLLTGG++PLAATLAT VF++F G SKL ALLHGHSY+A
Sbjct: 634 LGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTA 693
Query: 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
H +GCAAAAK+++W+KDP TN N+IP LRELWD EL++ ISS V+RVV+LGT+ A
Sbjct: 694 HPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLA 753
Query: 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLY 847
+EL A G +GY SLYA S++++LR EDG+Y RPLGNV+YLMCGP +SPE C++LL K+Y
Sbjct: 754 LELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPTTSPETCTRLLRKVY 813
Query: 848 QRLE 851
+RL
Sbjct: 814 RRLS 817
|
Length = 817 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 274 bits (704), Expect = 6e-84
Identities = 142/502 (28%), Positives = 211/502 (42%), Gaps = 100/502 (19%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDAT 416
W P+TQ K I+ E +Y + ++I D +SWW G P
Sbjct: 2 WHPYTQMKD--ALPPLPIER--AEGVYLYDEDGREYI----DGISSWWVNIHGHNHP--- 50
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
E+ + + HVMF +EPA+E AE L++ +G + +FSD+GS A+E+
Sbjct: 51 ---EINAAIKEQLDKLEHVMFGGLTHEPAIELAERLVEITPEGLE-KVFFSDSGSVAVEV 106
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS----PY 532
ALKMA + + + K + LA + YHGDT GAM +
Sbjct: 107 ALKMALQYW----------QNQGRPGK---TRFLAFRNGYHGDTFGAMSVGDVGGFHALF 153
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L VF + C + + +
Sbjct: 154 EPLL-------------FEVVF------------------IPAPPCYRCWDPD----DCE 178
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ LA++ + LL+ + I A I+EP+V AGGM P + R L + C
Sbjct: 179 AECLAAL------EALLEEHADE----IAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDE 228
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
+ +I DE+ TGF R G + G PDI C K LTGG +PLAATL T+ ++++F
Sbjct: 229 YGVLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFY 288
Query: 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772
D + KA +HGH+Y+ + L CAAA S+ ++ + RI E + +
Sbjct: 289 SDDEGKAFMHGHTYTGNPLACAAALASLDLLEEEDWLEQV---ARI--EAQLRAGLAPLR 343
Query: 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832
H V V LG + A+EL + + E GV +RPLGNVIYLM P
Sbjct: 344 DHPGVADVRVLGAIGAVELVRDVEPYIGAKIQ-----QFFLERGVLLRPLGNVIYLM--P 396
Query: 833 --CSSPEVCSQLLLKLYQRLEE 852
+ E L KL ++E
Sbjct: 397 PYIITDEE----LEKLTAAIKE 414
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 1e-76
Identities = 138/494 (27%), Positives = 194/494 (39%), Gaps = 117/494 (23%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421
W P+TQ KL I E +Y + I DA +SWW AT
Sbjct: 13 WHPYTQMKL--HPPPIPIVR--AEGAYLYLADGRELI----DAISSWWV----ATH---- 56
Query: 422 ARDMGY-----------TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
G+ R HV+F +EPA A+ L+ G +FSD+G
Sbjct: 57 ----GHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL-DHVFFSDSG 111
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----EA 526
S A+E+ALKMA + + + + + L+L+G YHGDT+G M
Sbjct: 112 SVAVEVALKMALQYW----------RNRGEPGRS---RFLSLRGGYHGDTIGTMSVGDRG 158
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
+ YT L + + P D
Sbjct: 159 GMHALYTPLLFEQ------VTAPFP-------------------------------PDG- 180
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
YE+ L ++ + +G I A I+EP+V AGGM DP + L
Sbjct: 181 -YEQATLDALEALLEKH-------------AGEIAAFIVEPLVQGAGGMLFYDPRYLAEL 226
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +IFDE+ TGF R G + G PDI C K LTGG +PLAATL T
Sbjct: 227 RRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAE 286
Query: 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELW 763
+F++F D + KA +H SY+A+ L CAAA S+ F+D + + + L
Sbjct: 287 IFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAAL--SAGLAEGL- 343
Query: 764 DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 823
+ V V LG + A+EL +L E GV +RPLG
Sbjct: 344 -----EPFRDLPGVADVRVLGAIGAVELD-----RPVLERDGPALRAFALERGVLLRPLG 393
Query: 824 NVIYLMCGPCSSPE 837
N IYLM + E
Sbjct: 394 NTIYLMPPYIITAE 407
|
Length = 423 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 2e-71
Identities = 134/506 (26%), Positives = 211/506 (41%), Gaps = 83/506 (16%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL--- 417
W PFTQ + P VI E + +++ D + W
Sbjct: 13 LWHPFTQMRD-PLAEPRVIVR--AEGVYLTDIDGRRYL----DGMSGLWC----VNHGHG 61
Query: 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
+ E+A + + HVMF +EPA+E AE L + +G +F+D+GS A+E A
Sbjct: 62 RPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETA 121
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-----EAQAPSPY 532
LKMA + + + ++ K ++ + YHGDTLGAM A + Y
Sbjct: 122 LKMALQYW----------RARGQPQRK---KFISRRNGYHGDTLGAMSVGGPVALRHAFY 168
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L L L P + E+
Sbjct: 169 DPLLP------EVLHLPAPYAYRRGFFG-EGDEEFA----------------------EA 199
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ +L ++ I ++ + I A I+EPVV AGGM + P + + + + C
Sbjct: 200 ADELEAL----ILEHGPET--------IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK 247
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
I +I DEV TGF R G + G VPDI C K LTGG +PL+A L ++ ++++F
Sbjct: 248 YGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFS 307
Query: 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772
A +HGH+YS + L CAAA ++ ++ +++ + L ++
Sbjct: 308 DG-DAGAFMHGHTYSGNPLACAAALANLDILEE----EDLLERVAEIGAYLQAGLQAALA 362
Query: 773 SHRTVQRVVALGTLCAIELQA-AGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCG 831
H V V LG + AIEL A + + A + E G+ +RPLG+VIYLM
Sbjct: 363 DHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLM-- 420
Query: 832 P--CSSPEVCSQLLLKLYQRLEEFDK 855
P + E +L+ L + L+E
Sbjct: 421 PPLIITREEIDELVDALREALDETLA 446
|
Length = 449 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 3e-52
Identities = 116/463 (25%), Positives = 183/463 (39%), Gaps = 92/463 (19%)
Query: 395 NKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
N+++ D + P E+ + A+ H EPA+E A
Sbjct: 36 NRYL----DFLSGIGVLNLGHNHP------EVVEALKEQLAKLTHFSLGFFYNEPAVELA 85
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL +G + +F ++G+ A+E ALK+A R ++ G+ K+
Sbjct: 86 ELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYT----------GRK--------KI 125
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
++ +G+YHG TLGA+ Y RG F LP L+
Sbjct: 126 ISFEGAYHGRTLGALSLTGSKKY-----------RGGFGPL-------------LPGVLH 161
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
+ + R + DL ++ + L+ +V A+I+EP+
Sbjct: 162 --------VPYPYRY--RPPAELADDLEAL------EEALEEHPEEV----AAVIVEPIQ 201
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
GG+ + P + + L + C+ I +I DEV TGF R G + G PDI GK
Sbjct: 202 -GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGK 260
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749
L GG+ PL A L + D+F LHG ++ + L CAAA ++ ++
Sbjct: 261 GLGGGL-PLGAVLGREEIMDAF----PAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLL 315
Query: 750 HNIIP-ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 808
N + L EL ++ H V V G + IEL AA +
Sbjct: 316 ENAAELGEYLRERL--RELAEK---HPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKI 370
Query: 809 LKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850
+K E G+ +RP G NVI L+ + E + L L + L
Sbjct: 371 IKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 6e-47
Identities = 143/489 (29%), Positives = 214/489 (43%), Gaps = 75/489 (15%)
Query: 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--- 411
+R + W P TQ + P V +R GE + +++ DA +SWWT
Sbjct: 25 QRDLAVLWHPCTQMREHPHTLPLVPIAR-GEGAWLVGHDGRRYL----DAVSSWWTNLFG 79
Query: 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL----QGVGKGWASRAYFS 467
+ + +A A VM +EPA++ AE LL + G+ S+ +++
Sbjct: 80 HAEPRIGAAIAAQ----AGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYA 135
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS +E+ALKMAF F E + T + +AL+ YHG+T+GA+
Sbjct: 136 DNGSAGVEVALKMAFHYFHNRGE------HRRT-------RFIALENGYHGETIGALAVG 182
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
D P +Y + L E L++ S D
Sbjct: 183 ---------------------DIP---LYRRVYAPLLLESLFAP----------SPDAYL 208
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
E S++ ++ ++ Q L + + G I ALI+EP + AGGM M P + R
Sbjct: 209 AEPGQSAEDYALQAADALQALFE----QSPGEICALILEPRLQCAGGMRMHHPAYLRRAR 264
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C +I DE+ TGF R G + G +PD+ C K LTGG +PL+A LAT +
Sbjct: 265 ELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQL 324
Query: 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767
+D+F+ DS+ +A LH HSY+ + L CAAA ++ F D ++I + +L
Sbjct: 325 YDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD----DDVIARNQPTAARMT-QL 379
Query: 768 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR---EDGVYMRPLGN 824
QI H V V G + A EL G A L R GV +RPLG+
Sbjct: 380 AAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGD 439
Query: 825 VIYLMCGPC 833
V+Y M C
Sbjct: 440 VLYWMPPYC 448
|
Length = 472 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 1e-43
Identities = 142/491 (28%), Positives = 212/491 (43%), Gaps = 90/491 (18%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--GPDATLQI 419
W P TQ K E + +I R GE + + +++ DA +SWW G A +I
Sbjct: 16 WHPCTQMK--DHEQLPLIPIRRGEGVWLEDFEGKRYL----DAVSSWWVNVFG-HANPRI 68
Query: 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479
+ + HV+ +EP +E +E L++ G SR +++DNGS+AIE+ALK
Sbjct: 69 NQR--IKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALK 125
Query: 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539
M+F + + K + + L SYHG+TL AM + +T
Sbjct: 126 MSFHYW----------RNRGKPRK---KRFVTLTNSYHGETLAAMSVGDVALFTE----- 167
Query: 540 WYSGRGLFLDPPTVFMYNSKWILSLPE---WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596
+ + L LD V S PE W EH F ++ E D
Sbjct: 168 --TYKPLLLDTIKV---PSPDCYLRPEGMSW-----EEHSRRMFAHMEQTLAEHHDE--- 214
Query: 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656
I A+I+EP++ AGGM M P++ ++L + C +
Sbjct: 215 -----------------------IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVH 251
Query: 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-S 715
+I DE+ GF R G + G PD C K LTGG +PLAA L T+ V+ +F D
Sbjct: 252 LIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYP 311
Query: 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL-RELWDLELIQQISSH 774
L+A LH HSY+ + L CAAA ++ F+ N+I R L R + E ++ H
Sbjct: 312 TLRAFLHSHSYTGNPLACAAALATLDIFEQ----DNVIENNRALARRM--AEATAHLADH 365
Query: 775 RTVQRVVALGTLCAIEL-QAAGCNAGYG-------SLYAASLLKKLREDGVYMRPLGNVI 826
V V G + AIE+ Q Y +Y +L E G +RPLG+V+
Sbjct: 366 PHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHAL-----ERGALLRPLGSVV 420
Query: 827 YLMCGPCSSPE 837
Y + +PE
Sbjct: 421 YFLPPYVITPE 431
|
Length = 466 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 1e-42
Identities = 138/470 (29%), Positives = 214/470 (45%), Gaps = 103/470 (21%)
Query: 399 GQQF-DACASWWTQGPDATLQIELARDMGYTAARF-----------GHVMFPENVYEPAL 446
G++ D +SWW A L GY R H+MF +EPA+
Sbjct: 43 GRRLIDGMSSWW-----AALH-------GYNHPRLNAAATNQLAKMSHIMFGGFTHEPAV 90
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A+ LL+ + ++ +F+D+GS A+E+A+KMA + + K ++
Sbjct: 91 ELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQ---YQQ-------AKGEVQRT-- 137
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
K ++ YHGDT AM P TG GLF SLP
Sbjct: 138 -KFATIRSGYHGDTWHAM--SVCDPVTGM--------HGLFNH-------------SLP- 172
Query: 567 WLYSKIVEHKDITFCSRDEI-FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625
V++ F + I F EE + + + Q+LL+ G + I ALI+
Sbjct: 173 ------VQY----FLPQPSIKFGEEWNDEAIEPL------QDLLEQKGDE----IAALIL 212
Query: 626 EPVVHAAGGMHMVDPLFQRILVKE---CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682
EPVV AGGM+ P + LVK C + +IFDE+ TGF R G + G VP
Sbjct: 213 EPVVQGAGGMYFYSPTY---LVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVP 269
Query: 683 DIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742
DI C GK LTGG + L+AT+ T A+ + + + K +HG ++ A+ L CA AA+SI+
Sbjct: 270 DIMCIGKALTGGYLTLSATITTEAIAQT-ICSGEAKCFMHGPTFMANPLACAIAAESIRL 328
Query: 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGS 802
+ NI +RI +L + + + +V V LG + +E++
Sbjct: 329 LLESPWQQNI---QRIEAQL--KQELAPAAEFDSVAEVRVLGAIGVVEMKEP-------- 375
Query: 803 LYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852
+ A+L + E G+++RP G ++Y+M SP+ SQL L + L++
Sbjct: 376 VNMATLQPRFVEHGIWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQ 425
|
Length = 429 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 6e-41
Identities = 133/534 (24%), Positives = 224/534 (41%), Gaps = 97/534 (18%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQ 393
S + Y E ++ W PFTQ K EE +I+ GE +Y
Sbjct: 4 STTDKPSYTYEELSEK-------NKAYVWHPFTQMKDYLEEDPLIIER--GEGRKLYDVN 54
Query: 394 KNKFIGQQFDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPAL 446
N++ +D +S W Q P D ++ +L + T +V P++
Sbjct: 55 GNEY----YDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANV--------PSI 102
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
AE L++ V +G + ++SD+G+TA+EIA+KMAF+ + GK ++ +
Sbjct: 103 LLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMAFQYWQ--------NKGKPKKQRFV- 152
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
LK +YHGDT+GA+ A LF + ++ + + P
Sbjct: 153 ----TLKNAYHGDTIGAVSVGAID---------------LFHQVYSSLLFEA-IKMPYPY 192
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
S K + E + LL+ +++ I +E
Sbjct: 193 TYRSPYGNDKAEI---VKKHLEELEE---------------LLKEKHEEIAAII----VE 230
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + + + L C + I DEV TGF R G + PDI
Sbjct: 231 PLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT 290
Query: 687 YGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745
GK LTGG +P+A T+ T+ ++++F GD + K HGHSY+ + LGCA A +++ ++
Sbjct: 291 AGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYE- 349
Query: 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL-QAAGCNAGY---- 800
N+I E+ + + ++ + + + V + LG + IEL + +
Sbjct: 350 ---KTNLI-EQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTE 405
Query: 801 --GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852
G + RE G+ RPLGN I M S+ + ++L LY+ + +
Sbjct: 406 RVG--VQVCK--RSRELGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISD 455
|
Length = 460 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 5e-40
Identities = 97/414 (23%), Positives = 148/414 (35%), Gaps = 88/414 (21%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ +Y +++ D + G P ++ + + A + H F
Sbjct: 5 AKGVWLYDVDGRRYL----DFLSGIAVVNLGHCHP------KIVQAVKEQADKLTHTSFR 54
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
EPAL+ AE L Q G R +F ++GS A E A+K+A +
Sbjct: 55 AFTTEPALQLAEKLAQLTPGG-LDRVFFMNSGSEANETAIKLARQYAKKKGA-------- 105
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
T K K++A G +HG TLGA+ S Y G G L
Sbjct: 106 --TGKT---KIIAFSGGFHGRTLGALSVTGSSGY--------KKGFGPSLP--------- 143
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ LP E +LA + + +
Sbjct: 144 -GVYFLP--------------------YPDLEAAEEELACADEALRLIKAVHDDN----- 177
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A+I+EP+ GG+ P F L + C+ + +I DEV TGF R G +
Sbjct: 178 -IAAVIVEPI-QGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHY 235
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PDI K LTGG +PL+A LAT + +F HG ++ + L CAAA
Sbjct: 236 GVTPDIMTLAKALTGG-LPLSAVLATAEIMQAF------HPGSHGGTFGGNPLACAAALA 288
Query: 739 SIKWFKDPQTNHNI-IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
+ +D N + + L + + V G + AIE+
Sbjct: 289 VLDIIEDENLLQNAQEKGDYLRKGL------LALQDKPVIGDVRGKGLMIAIEI 336
|
Length = 338 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-37
Identities = 122/456 (26%), Positives = 183/456 (40%), Gaps = 105/456 (23%)
Query: 403 DACASWWTQGPDATLQ----IELARDMGYTAARFGHVMFPENVYEPALE-CAELL----- 452
D +SWW A + +L M HVMF + PA+E C +L+
Sbjct: 47 DGMSSWW-----AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQ 101
Query: 453 -LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511
L+ V + +D+GS A+E+A+KMA + + E + L
Sbjct: 102 PLECV--------FLADSGSVAVEVAMKMALQYWQAKGEP--------------RQRFLT 139
Query: 512 LKGSYHGDTLGAMEAQAP-----SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
L+ YHGDT GAM P S Y G+L + LF P
Sbjct: 140 LRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPE------NLFAPAPQ-------------- 179
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
SR F E D D+A ++ ++ + I A+I+E
Sbjct: 180 ---------------SR---FDGEWDERDIAP-FARLMAAH---------RHEIAAVILE 211
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + P + + + K C I +I DE+ TGF R G + G PDI C
Sbjct: 212 PIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC 271
Query: 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746
GK LTGG + L+ATL T V ++ + + + +HG ++ + L CA A S+ +
Sbjct: 272 LGKALTGGTMTLSATLTTREVAET-ISNGEAGCFMHGPTFMGNPLACAVANASLSLLESG 330
Query: 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 806
+ LR E + + V V LG + +E + A
Sbjct: 331 DWQQQVAAIEAQLR-----EELAPLRDAPMVADVRVLGAIGVVETTR--------PVNMA 377
Query: 807 SLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQL 842
+L + E GV++RP G +IYLM PE +L
Sbjct: 378 ALQRFFVEQGVWIRPFGKLIYLMPPYIILPEQLQRL 413
|
Length = 428 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 5e-35
Identities = 117/439 (26%), Positives = 175/439 (39%), Gaps = 97/439 (22%)
Query: 403 DACASWWTQG---------PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453
DA +SWW+ A QI+ HVMF +EPA++ LL
Sbjct: 44 DAMSSWWSAAHGHGHPRLKAAAHKQID----------TMSHVMFGGLTHEPAIKLTRKLL 93
Query: 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513
G ++SD+GS ++E+A+KMA ++S G+ E+ ++L +
Sbjct: 94 NLTDNGL-DHVFYSDSGSVSVEVAIKMAL-QYS---------KGQGHPERT---RLLTWR 139
Query: 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR---GLFLDPPTVFMYNSKWILSLPEWLYS 570
YHGDT AM P G + W G +F P P
Sbjct: 140 SGYHGDTFAAMSVCDPE---GGMHSLW-KGTLPEQIFAPAP-------------PVR--- 179
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
S EI S L S+ I + + A+IIEP+V
Sbjct: 180 ---------GSSPQEI------SEYLRSL-ELLIDET------------VAAIIIEPIVQ 211
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGM D + C I +I DE+ TGF R G G PDI C GK
Sbjct: 212 GAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKA 271
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750
LTGG + AATL T+ V + AL+HG ++ A+ L CA A S++ +
Sbjct: 272 LTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRK 331
Query: 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLK 810
+ +RI EL + + ++ V V LG + +E++ A++
Sbjct: 332 QV---KRIEAEL--IAGLSPLAHLPGVADVRVLGAIGVVEMEQ---PVDMEEATQAAV-- 381
Query: 811 KLREDGVYMRPLGNVIYLM 829
+ GV++RP G ++Y+M
Sbjct: 382 ---DHGVWLRPFGRLVYVM 397
|
Length = 422 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-30
Identities = 106/403 (26%), Positives = 162/403 (40%), Gaps = 72/403 (17%)
Query: 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
F + A+E + L+ R +FS GS ++E ALK+A R++ +V
Sbjct: 80 FDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQY---WKVR---- 131
Query: 497 GK-DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY-TGFLQQPWYSGRGLFLDPPTVF 554
G+ + T K ++LK YHG G + + + +P G T +
Sbjct: 132 GQPERT------KFISLKQGYHGTHFGGASVNGNTVFRRNY--EPLLPG---CFHVETPW 180
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSR---DEIFYEERDSSDLASIYSSYISQNLLQN 611
+Y + + PE ++ C+R EI ++ D+
Sbjct: 181 LYRNPFTEQDPE----ELARI-----CARLLEREIAFQGPDT------------------ 213
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
I A I EPV AGG+ +V P LV+E C I +I DEV TGF R G
Sbjct: 214 --------IAAFIAEPV-QGAGGV-IVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAH 729
+ G PDI C K +T G +PL AT+ + D+F A++HG++YS H
Sbjct: 264 SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGH 323
Query: 730 ALGCAAAAKSIKWFKDPQTNHNIIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
+ CAAA ++ N +L L L+ V V G + A
Sbjct: 324 PVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLK-----ERFELVGDVRGKGLMLA 378
Query: 789 IEL---QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 828
++L +A YA ++ RE+GV +RP G I L
Sbjct: 379 LDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKIIL 421
|
Length = 449 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-26
Identities = 100/432 (23%), Positives = 158/432 (36%), Gaps = 79/432 (18%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A+ H + YEP +E AE L + +F ++G+ A+E A+K+A R ++
Sbjct: 85 LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR 143
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
V+A G++HG TLGA+ P P+ +G G
Sbjct: 144 P------------------GVIAFDGAFHGRTLGALSLTGSKP-------PYKAGFGPLP 178
Query: 549 DPPTVFMY-NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
Y N + D +F E ++A
Sbjct: 179 PGVYHVPYPNPY----RCPFGIGGEECGDDALEYIERALFDLEVGPEEVA---------- 224
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
A+IIEP+ G + + L K C+ I +I DEV TGF
Sbjct: 225 --------------AIIIEPIQGEGGIIVPPKGFLKA-LRKLCREHGILLIADEVQTGFG 269
Query: 668 RLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723
R G E G PDI K L GG +PL+A + + D G HG
Sbjct: 270 RTGKMFAFEHF----GVEPDIVTLAKSLGGG-LPLSAVVGRAEIMDWPPG-------GHG 317
Query: 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783
++ + + CAAA + ++ LR+ LE +Q+ H + V L
Sbjct: 318 GTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRD--RLEELQE--KHPLIGDVRGL 373
Query: 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM---RPLGNVIYLMCGPCSSPEVCS 840
G + +EL + AA ++ + E G+ + P GNV+ ++ S E
Sbjct: 374 GLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELD 433
Query: 841 QLLLKLYQRLEE 852
+ L L + L+E
Sbjct: 434 EGLDILEEALKE 445
|
Length = 447 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-24
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 8/213 (3%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+G I ALI+EP+V A GM M DP + R L C + +I DE+ G R G +
Sbjct: 219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACE 278
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736
G PD C K ++GG +PL+ L+ +A+F +F D + LH HSY+ + L C AA
Sbjct: 279 QAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAA 338
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796
++ F + +++ + + +++H V+ + GT+ A +
Sbjct: 339 LATLDLFAE----DDVLARNA-RKSARLRAALAPLAAHPQVRHLRQRGTIFAFD---VAL 390
Query: 797 NAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829
+ ++ + E + +RP+G +YLM
Sbjct: 391 DGDAARTFSRRFFEAALERELLLRPIGTTVYLM 423
|
Length = 453 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 111/446 (24%), Positives = 171/446 (38%), Gaps = 132/446 (29%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N++ EP E AE L++ +A R +F ++G+ A E ALK+A RK++
Sbjct: 71 AEKLWHV---SNLFYNEPQAELAEKLVELSP--FADRVFFCNSGAEANEAALKLA-RKYT 124
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
D E + K++A + S+HG TLGA+ A TG QP Y
Sbjct: 125 GDPE---------------KSKIIAFENSFHGRTLGALSA------TG---QPKYRKGFG 160
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + +N D+ ++ + I
Sbjct: 161 PLLPGFRHVPFN-------------------------------------DIEAL-EAAID 182
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
++ A+I+EP+ GG+ P F + L + C +I DEV TG
Sbjct: 183 ED------------TAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG 229
Query: 666 FWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKA 719
R T L PDI K L GG P+ A LAT + +F GD
Sbjct: 230 LGR-----TGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAFTPGD----- 278
Query: 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-RILRELWDLELIQQISSHRTVQ 778
HG ++ + L CA A ++ + + E R E L + + V+
Sbjct: 279 --HGSTFGGNPLACAVALAVLEVLLEEG-----LLENVREKGEYLLQRLRELKRRYPLVK 331
Query: 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-LGNVIYLMCGPCSSPE 837
V G + IEL+ A +++ LRE+GV + P NVI + P P
Sbjct: 332 EVRGRGLMIGIELKE--------PYRARDIVRALREEGVLVLPAGPNVIRFL--P---PL 378
Query: 838 VCSQLLLKLYQRLEEFDKVEEKLKSC 863
V ++ EE D+ + L+
Sbjct: 379 VITE---------EEIDEALDALERA 395
|
Length = 404 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 26/247 (10%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EPV + G + QR L + C I +IFDEV TGF RLG A G
Sbjct: 216 IAAVIVEPVAGSTGVLIPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAPFAAQYFG 274
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAAAK 738
PD+ K LT G IP+ A ++ + D+F+ G HG++YS H L CAAA
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALA 334
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---ALGTLCAIELQAAG 795
++ ++ ++ L W+ + S R V+ LG + A+EL
Sbjct: 335 TLDLYER----EGLLTRAARLAPYWE----DALHSLRDAPHVIDIRNLGLVGAVELAP-- 384
Query: 796 CNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855
G A + K E G+ +R G+++ L SP L+++ Q E FD
Sbjct: 385 -RDGKPGKRAYEVFLKCFEKGLMIRYTGDILAL------SPP----LIIEEAQIDELFDI 433
Query: 856 VEEKLKS 862
+ + LK
Sbjct: 434 LAQALKE 440
|
Length = 442 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 3e-21
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EP+ +AG + V P QR L + C I +IFDEV TGF RLG A+
Sbjct: 219 IAAVIVEPMAGSAGVL--VPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAAFAAER 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAA 736
G PDI + K LT G IP+ A +A++ ++D+F+ G HG++YSAH + CAA
Sbjct: 276 FGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAG 335
Query: 737 AKSIKWFKDPQTNHNIIPER-RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795
++ +++ + ER L ++ + + + V + +G + IEL
Sbjct: 336 LATLDIYREED-----LFERAAELAPYFE-DAVHSLKGLPHVIDIRNIGLVAGIELAP-- 387
Query: 796 CNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 828
G K E G+ +R G+ I L
Sbjct: 388 -RPGAPGARGYEAFMKCFEKGLLVRYTGDTIAL 419
|
Length = 445 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 2e-20
Identities = 96/387 (24%), Positives = 148/387 (38%), Gaps = 113/387 (29%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y EP E AE L V + +F ++G+ A E A+K+A RK+ H+
Sbjct: 76 NLYYIEPQEELAEKL---VELSGMDKVFFCNSGAEANEAAIKLA-RKYG--HKKG----- 124
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
+ +++ + S+HG TL + A TG QP Y + F F+Y
Sbjct: 125 ------IEKPEIITAENSFHGRTLATLSA------TG---QPKY--QEGFEPLVEGFIY- 166
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
V DI ++ + ++
Sbjct: 167 ---------------VPFNDI------------------EALKA-------------AIT 180
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ GG++ D + + L + C I +I DEV TG R G
Sbjct: 181 DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAA 736
G PDI K L GGV P+ A LA V D F GD HG ++ + L CAAA
Sbjct: 240 YGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGD-------HGSTFGGNPLACAAA 291
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDL------ELIQQISSHRTVQRVVALGTLCAIE 790
I+ II E +L ++ +L + + + ++ V LG + IE
Sbjct: 292 LAVIE----------IIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIE 341
Query: 791 LQAAGCNAGYGSLYAASLLKKLREDGV 817
L AA ++KK E G+
Sbjct: 342 L----------DRPAAEIVKKALEKGL 358
|
Length = 396 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-19
Identities = 101/405 (24%), Positives = 154/405 (38%), Gaps = 108/405 (26%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y EP E AE L V A R +F ++G+ A E ALK+A RK++
Sbjct: 56 LEKLVHV---SNLYYTEPQEELAEKL---VEHSGADRVFFCNSGAEANEAALKLA-RKYT 108
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
G EK K++A + S+HG T+GA+ A Y Q+ +
Sbjct: 109 ----------GDKGKEKK---KIIAFENSFHGRTMGALSATGQPKY----QKGFEP---- 147
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + YN E L I +
Sbjct: 148 -LVPGFSYAPYND------IESLKKAIDDE------------------------------ 170
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
A+I+EP+ GG++ F + L + C+++ +IFDEV TG
Sbjct: 171 --------------TAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTG 215
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGH 724
R G + G PDI K L GGV P+ ATLA V ++F GD HG
Sbjct: 216 IGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGD-------HGS 267
Query: 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784
++ + L CAAA ++ + + N+ + +E + + V G
Sbjct: 268 TFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPNKE-----VRGKG 322
Query: 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYL 828
+ IEL+A ++KK E G+ + G V+
Sbjct: 323 LMLGIELEAP----------CKDIVKKALEKGLLVNCAGPKVLRF 357
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 1e-18
Identities = 105/404 (25%), Positives = 158/404 (39%), Gaps = 85/404 (21%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E + Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ V+A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GVIAFTGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ P L+ + E D S + IF + D+A+I
Sbjct: 164 GHVYR------ALYPCPLHG-VSE--DDAIASIERIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + P F + L C I +I DEV TG R G
Sbjct: 204 -------------IIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730
+ +G D+ + K + GG PLA V D+ + L G +Y+ +
Sbjct: 250 TLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDA-IAPGGL-----GGTYAGNP 302
Query: 731 LGCAAAAKSIKWFKDPQ--TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
+ CAAA +K F+ N + E+ L++ L I H + V LG + A
Sbjct: 303 IACAAALAVLKVFEQENLLQKANALGEK--LKD--GLLAIA--EKHPEIGDVRGLGAMIA 356
Query: 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832
IEL G ++ + A ++ + R+ G +I L CGP
Sbjct: 357 IELFEDGDHSKPNAKLTAQIVARARDKG--------LILLSCGP 392
|
Length = 425 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-18
Identities = 93/356 (26%), Positives = 148/356 (41%), Gaps = 67/356 (18%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA + A+ L G + ++F ++GS A E A+K+A + F +
Sbjct: 74 EPAEKLAKKLSDLSP-GDLNWSFFVNSGSEANETAMKIAIQHFQ----------ERGIQG 122
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
K K+L+ SYHG T+GA+ +G + L D PT+
Sbjct: 123 KH---KILSRWMSYHGITMGALS------MSGHPLRR-QRFVSLLEDYPTI--------- 163
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622
S P +C R + + LA + ++ G + I A
Sbjct: 164 SAP--------------YCYRCP-VQKVYPTCQLACATEL---ETAIERIG---AEHIAA 202
Query: 623 LIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I EP++ AAG +V P ++ I KE C + I I DEV TG R G + G
Sbjct: 203 FIAEPIIGAAGAA-VVPPKGYYKVI--KEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI GK L G P+AAT+ ++ V + + S+ ++ GH+ SA+ L A A
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRS--IMSGHTLSANPLSAATALAV 317
Query: 740 IKWFKDPQTNHNIIPERRILRE--LWDLELIQQISSHRTVQRVVALGTLCAIELQA 793
+++ + HN+ + E + L+ +QQ S+ + V G L +E A
Sbjct: 318 LEYME----KHNLPEKAAEKGEYLIKGLQKVQQQST--IIGDVRGKGLLIGVEFVA 367
|
Length = 447 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 155 ISGEEDSSVSELVCKTL-----------FAWEEAVSPHLAAERESGGVVGD-SKVIETLG 202
SG D SELV + L + +SPHLAA E GV D K+++ L
Sbjct: 38 QSGLVDDGDSELVKRLLGLDQTREHPEPYRLSAPLSPHLAARLE--GVTIDLEKIVKKLP 95
Query: 203 KCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG 262
K + L +VE AGG+ P L D+ LP ILV G LG
Sbjct: 96 KDA---------------DPL-VVEGAGGLMVPLNENLLNIDIAANLGLPVILVARGGLG 139
Query: 263 GISGTISAYESLKLRGYDVVAVVF-EDHGLVNEVPLMSYLRNRVPVL-VLPPLPQ 315
I+ T+ E+L+ RG +++ V+ N + ++ + VPVL V+P LP
Sbjct: 140 TINHTLLTIEALRSRGINILGVILNGVPNPANVEAIEAF--SGVPVLGVIPYLPD 192
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 105/467 (22%), Positives = 170/467 (36%), Gaps = 142/467 (30%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPDATLQI 419
PF+ K + E+ VI E ++ + NK + D A W G
Sbjct: 21 PFSDMKALNEKGSRVITR--AEGVYLWDSEGNKIL----DGMAGLWCVNVGYGRK----- 69
Query: 420 ELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
ELA D R + + F + + PA+E A L + G+ + +F+++GS A +
Sbjct: 70 ELA-DAAARQMRELPYYNTFF-KTTHPPAIELAAKLAEVAPPGF-NHVFFTNSGSEANDT 126
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--------MEAQA 528
L+M + GK +K + +++ K YHG T+ M Q
Sbjct: 127 VLRMVRHYW--------ALKGK--PQKKV---IISRKNGYHGSTVAGASLGGMKYMHEQG 173
Query: 529 PSPYTGF--LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
P G + QP++ G G + P ++ L+ L +KI+E
Sbjct: 174 DLPIPGIVHIDQPYWFGEGGDMTPE-------EFGLAAARQLEAKILE------------ 214
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD----PLF 642
+ + A I EP+ AGG+ + P
Sbjct: 215 LGADN----------------------------VAAFIGEPI-QGAGGVIIPPATYWPEI 245
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
QRI C+ I ++ DEV GF R G + G PD+ K LT G IP+ A
Sbjct: 246 QRI----CRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVG 301
Query: 703 ATNAVFDSFVGDSKLKALL-------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755
VGD + L+ HG +YS H + A A +++ I+ +
Sbjct: 302 ---------VGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLR----------ILRD 342
Query: 756 RRI-----------LRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
I L++ ++++ H V V +G + AIEL
Sbjct: 343 EGIVERVRDDTGPYLQKRL-----RELADHPLVGEVRGVGLVGAIEL 384
|
Length = 456 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 88/352 (25%), Positives = 134/352 (38%), Gaps = 79/352 (22%)
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A L+ + G S+ +F++ G+ A E A++MA R + G+
Sbjct: 99 EAARLIAE-RAPGDLSKVFFTNGGADANEHAVRMA-RLHT----------GRP------- 139
Query: 507 LKVLALKGSYHGDTLGAMEAQA-----PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
KVL+ SYHG T A+ P+ +G F P F+Y S++
Sbjct: 140 -KVLSAYRSYHGGTGSAINLTGDPRRWPNDTGR-------AGVVHFFGP---FLYRSEFH 188
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+ E + + H I E + I
Sbjct: 189 ATTEEEECERALAHL------ERVIELEGPST--------------------------IA 216
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A+++E V AG +V P V+E C I +I DEV GF R G + G
Sbjct: 217 AILLESVPGTAG--ILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV 274
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740
VPD+ + K + G +PL + A+ +F D + G +YS H L CAAA +I
Sbjct: 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATF-AD---RPYPGGLTYSGHPLACAAAVATI 330
Query: 741 KWFKDPQTNHNIIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
++ I+ RI E+ L + H +V V LG A+EL
Sbjct: 331 NAMEE----EGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALEL 378
|
Length = 451 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLL 678
I A I EP++ +GG+ + P + + + C+ I I DEV TGF RLG + +
Sbjct: 221 IAAFIAEPIL-GSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL-HGHSYSAHALGCAAAA 737
G PDI + K LT G PL A + + + D G + + HG +YS H + CAAA
Sbjct: 280 GIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAAL 339
Query: 738 KSI 740
K+I
Sbjct: 340 KNI 342
|
Length = 466 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-15
Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 39/231 (16%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV+ AGG+ +V P +++I + I ++ DEV GF R G +
Sbjct: 219 IAAFIGEPVM-GAGGV-IVPPKTYWEKIQAV-LRKYDILLVADEVICGFGRTGNMFGCET 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAA 736
G PDI K L+ PL+A L V+D +S K+ HG + S H + A A
Sbjct: 276 FGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVA 335
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDL-----ELIQQISSHRTVQRVVALGTLCAIEL 791
+++ II ER ++ + ++ ++ H V V +G + A+EL
Sbjct: 336 LENLA----------IIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVEL 385
Query: 792 QA----------AGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832
A G E GV R +G+ + C P
Sbjct: 386 VADKATKTPFEPPGKVGAR-------ANAAAHEHGVISRAMGDTLAF-CPP 428
|
Length = 460 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-15
Identities = 83/371 (22%), Positives = 151/371 (40%), Gaps = 82/371 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A +F H + YEPA+E AE L++ G+ + +F+++G+ + E A+K+A ++
Sbjct: 83 AEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA--RYHTG 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ FLG ++HG T G++ A P +Q+ +G F
Sbjct: 141 RKYIIAFLG-----------------AFHGRTYGSLSLTASKP----VQR-----KGFFP 174
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
P V Y + W + PE + +++ + D +F + ++A
Sbjct: 175 LMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE------DYLFKKLVPPEEVA----- 223
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFD 660
A+I+EP+ GG ++V P F+ L K I +I D
Sbjct: 224 -------------------AIIVEPI-QGEGG-YVVPPKNFFKE-LRKLADKYGILLIDD 261
Query: 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL 720
EV TG R G + G PDI K + GG +PL A + + G
Sbjct: 262 EVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAELMFLPPG------- 313
Query: 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780
H +++ + + AAA +++ ++ ++ + L E EL + + + V
Sbjct: 314 SHANTFGGNPVAAAAALATLEELEE-----GLLENAQKLGEYLRKELKELKEKYEFIGDV 368
Query: 781 VALGTLCAIEL 791
LG + +EL
Sbjct: 369 RGLGLMIGVEL 379
|
Length = 441 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 27/254 (10%)
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
LLQ+P + A I+EP+ G+ + D + + + + C+ + +I DE+ TG
Sbjct: 173 LLQDPN------VAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727
R G D G PDI GK L+GG+ P++A LA + V +K HG +Y
Sbjct: 226 RTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLV------IKPGEHGSTYG 279
Query: 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787
+ L CA A ++++ K+ + N + R+ L + + V+ + G L
Sbjct: 280 GNPLACAVAVEALEVLKEEKLAENAQRLGEVFRD----GLKELLKKSPWVKEIRGKGLLN 335
Query: 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLY 847
AI + + A L KL+E+G+ +P + I P + + L +
Sbjct: 336 AIVFDHS------DGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITK---EQLDQAL 386
Query: 848 QRLEE-FDKVEEKL 860
+ +++ +
Sbjct: 387 EIIKKVLKSFDSNK 400
|
Length = 400 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 55/187 (29%), Positives = 76/187 (40%), Gaps = 30/187 (16%)
Query: 620 IGALIIEPVVHAAGGMHMVDP------LFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673
I A I EPV+ G +V P Q +L K I +I DEV TGF RLG
Sbjct: 221 IAAFIAEPVLGTGG---IVPPPAGYWPAIQAVLKK----YDILLIADEVVTGFGRLGSMF 273
Query: 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALG 732
+D G PD+ K LT PL+ ++ V+D G + A+ HG +YS H +
Sbjct: 274 GSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPIC 333
Query: 733 CAAAAKSIKWFKDPQTNHNIIPERRILR------ELWDLELIQQISSHRTVQRVVALGTL 786
AAA N +I+ ++ + L H V V +G L
Sbjct: 334 AAAAL----------ANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGML 383
Query: 787 CAIELQA 793
A+E A
Sbjct: 384 AAVEFVA 390
|
Length = 461 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-14
Identities = 89/367 (24%), Positives = 147/367 (40%), Gaps = 91/367 (24%)
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA--FRKFSFDHEVLVDFLGKD 499
+EPA++ AE L + +G + +FS++GS A E A K+A + +
Sbjct: 88 HEPAIKLAEKLNEWLGGEY--VIFFSNSGSEANETAFKIARQYHAQKGEPH--------- 136
Query: 500 TTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY------TGFLQQPWYSGRGLFLDPP 551
K ++ +YHG+++GA+ A QA Y GFL P PP
Sbjct: 137 ------RYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVP----------PP 180
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
C R E D DL + I + +
Sbjct: 181 ----------------------------DCYRMPGIESE-DIYDLECV--KEIDRVMTW- 208
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
++S I A+I+EP++ GG+ M + + VKE CQ +I DEV GF R G
Sbjct: 209 ---ELSETIAAVIMEPII-TGGGVLMPPQDYMK-AVKEICQKHGALLISDEVICGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730
G PDI K +T +PL+AT ++++F G + + H +++ +
Sbjct: 264 KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNP 323
Query: 731 LGCAAAAKSIKWFKDPQTNHNIIPERRIL---RELWDL---ELIQQISSHRTVQRVVALG 784
CA A K+++ I+ ++ +L +L +L +++ H V + G
Sbjct: 324 AACALALKNLE----------IMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKG 373
Query: 785 TLCAIEL 791
L IEL
Sbjct: 374 LLVGIEL 380
|
Length = 451 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-14
Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 622 ALIIEPVVHA-AGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A + E VV A AG + V F+RI +E C + +I DEV G R G + G
Sbjct: 202 AFVAETVVGATAGAVPPVPGYFKRI--REVCDRYGVLLILDEVMCGMGRTGTLFACEEDG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ K L G P+ A LA++ ++D+ S HGH+Y HA CAAA
Sbjct: 260 VAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGS--GFFQHGHTYLGHATACAAA--- 314
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794
L + + I+ + V A G L+
Sbjct: 315 -------------------------LAVQRVIAEDGLLANVRARGEQLRARLRER 344
|
Length = 443 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 5e-14
Identities = 81/313 (25%), Positives = 129/313 (41%), Gaps = 67/313 (21%)
Query: 438 PENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495
P V YE L+ AE L + G +FS++G+ AIE ALK+A
Sbjct: 79 PSGVIYYESILKLAEEL-AEITPGGLDCFFFSNSGAEAIEGALKLA-------------- 123
Query: 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGFLQQPWYSGRGLFLDPPTVF 554
K T++ +++ G +HG TLGA+ S Y + QP L
Sbjct: 124 --KHVTKR---PYIISFTGCFHGRTLGALSVTTSKSKYRKY-YQP--------LLGSVYQ 169
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614
P + + +D C + + DL S++ ++
Sbjct: 170 ---------APYPYCDRCPKGEDPEVCFLECL-------RDLESLFKHQVTPEE------ 207
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+IIEPV+ GG + F + L + C I +IFDEV TGF R G
Sbjct: 208 -----VAAVIIEPVL-GEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261
Query: 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCA 734
A G VPDI K + G +PL+A +A+ + + + S HG ++ + + CA
Sbjct: 262 AQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWPLGS------HGTTFGGNPVACA 314
Query: 735 AAAKSIKWFKDPQ 747
AA +++ K+ +
Sbjct: 315 AALATLEVIKEEK 327
|
Length = 433 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 6e-14
Identities = 102/440 (23%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
+P+L+ A+ LL+ + +F+++GS A + +K+ + + LG+ +
Sbjct: 133 KPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVW--------YYNNALGRPNKK 184
Query: 503 KCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK-- 559
K I A SYHG TL A + P+ + F D P F+ ++
Sbjct: 185 KFI-----ARSKSYHGSTLISASLSGLPALHQKF-------------DLPAPFVLHTDCP 226
Query: 560 --WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W LP E EE S+ LA +NL+ G +
Sbjct: 227 HYWRFHLP------------------GET--EEEFSTRLADNL-----ENLILKEGPET- 260
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRI--LVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A I EPV+ A G + F++I ++K+ I I DEV F RLG
Sbjct: 261 --IAAFIAEPVMGAGGVIPPPATYFEKIQAVLKK---YDILFIADEVICAFGRLGTMFGC 315
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCA 734
D PD+ K L+ +P+ A L + + D S KL + HG +YS H + CA
Sbjct: 316 DKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCA 375
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDL-----ELIQQISSHRTVQRVVALGTLCAI 789
A +++K +K ER I + + + I+ S + + G +
Sbjct: 376 VALEALKIYK----------ERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGT 425
Query: 790 ELQA--AGCNA-----GYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQL 842
E + + G G+ + A + ++ G+ +R G+ I + +PE +L
Sbjct: 426 EFVDNKSPNDPFPAEWGVGAYFGA----ECKKRGMLVRVAGDNIMMSPPLIITPEEVDEL 481
Query: 843 LLKLYQRLEEFDKVEEKLKS 862
+ + L+ ++ +LKS
Sbjct: 482 ISIYGKALKATEERVAELKS 501
|
Length = 504 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 5e-13
Identities = 95/393 (24%), Positives = 153/393 (38%), Gaps = 83/393 (21%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
E A+ECAE L + G G +R F+ G++AI +ALK+A R + +
Sbjct: 113 ETAIECAEKLTEIAG-GELNRVLFAPGGTSAIGMALKLA-RHITGNF------------- 157
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
KV++L S+HG +L A+ G F M
Sbjct: 158 -----KVVSLWDSFHGASLDAISV---------------GGEACFRQGMGPLMAG----- 192
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI-YSSYISQNLLQNPGLKVSGCIG 621
VE R + + D SD+ Y Y+ ++ G IG
Sbjct: 193 ----------VERIPPAVSYRG--AFPDADGSDVHYADYLEYV---------IEKEGGIG 231
Query: 622 ALIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
A I E V + V ++R V+E C + +I DE+ G R G T
Sbjct: 232 AFIAEAVRNTD---VQVPSKAYWKR--VREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGH-SYSAHALGCAAAA 737
G PDI C GK L GG++P+AA + T +++ L GH ++ LGCAAA
Sbjct: 287 GIEPDILCIGKGLGGGLVPIAAMI-TKDKYNT-AAQISL-----GHYTHEKSPLGCAAAL 339
Query: 738 KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 797
+I+ + ++ + + + L++ + + + V +G L +EL
Sbjct: 340 ATIEVIEQ----EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHT 395
Query: 798 AGYGSLYAASLLKKLREDGVYMR-PLGNVIYLM 829
A ++L + +G+ + GNVI L
Sbjct: 396 KERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLS 428
|
Length = 459 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + K C +I DEV TG R G +
Sbjct: 232 VAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHEN 290
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C K L GGV+P+ AT+AT VF + LH ++ + L CAAA +
Sbjct: 291 VQPDILCLAKALGGGVMPIGATIATEEVFSVLFDN----PFLHTTTFGGNPLACAAALAT 346
Query: 740 IK 741
I
Sbjct: 347 IN 348
|
Length = 459 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 2e-12
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + C +I DEV TG R G + G
Sbjct: 225 VAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEG 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI C K L GGV+P+ AT+AT AVF + LH ++ + L CAAA +
Sbjct: 284 VQPDILCLAKALGGGVMPIGATIATEAVFSVLFDN----PFLHTTTFGGNPLACAAALAT 339
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSH--RTVQRVVALGTLCAIEL 791
I + +P + ++ + L+ QQ+++ + G L AIE
Sbjct: 340 INELLEKN-----LPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEF 388
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-12
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 41/257 (15%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A+ +EPV +A G F+R V+E C + ++ DEV F RLG +
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFER--VREICDRYDVLLVSDEVICAFGRLGEMFGCERF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G VPDI K +T G PL A +A++ +F+ F+ LHG+++ H + A A
Sbjct: 280 GYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGP--TMFLHGYTFGGHPVSAAVALA 337
Query: 739 SIKWFKDPQTNHNIIPE----RRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL--- 791
++ F+ ++ R L +L DL + V V G IEL
Sbjct: 338 NLDIFEREGLLDHVRDNEPAFRATLEKLLDLPI---------VGDVRGDGYFYGIELVKD 388
Query: 792 QAAG---CNAGYGSLYAASLLKKLREDGVYMRP--LGN-VIYLMCGPCSSPEVCSQLLLK 845
+A + L L L E G+Y R G+ V+ L + P + Q
Sbjct: 389 KATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQL-----APPLISGQ---- 439
Query: 846 LYQRLEEFDKVEEKLKS 862
EEFD++E+ L+S
Sbjct: 440 -----EEFDEIEQILRS 451
|
Length = 460 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-12
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 15/210 (7%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A + EP+ AG + + + + + + C + +I DE+ TG R G D
Sbjct: 225 IAAFLFEPIQGEAGVV-IPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEE 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ GK L GGVIP++A LA V +K HG ++ + L A A +
Sbjct: 284 VRPDVVILGKALGGGVIPVSAVLADKDVMLC------IKPGEHGSTFGGNPLASAVAMAA 337
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
++ +D + + LR+ L+ IQ+ + ++ V G L A+ L +
Sbjct: 338 LQVVQDEKLAERSAKLGQELRD--QLQKIQKQFP-KLIKEVRGRGLLNAVVLN----SPK 390
Query: 800 YGSLYAASLLKKLREDGVYMRPL-GNVIYL 828
G + A + KL+E G+ +P +I L
Sbjct: 391 LGPVSAYDVCLKLKERGLLAKPTHDTIIRL 420
|
Length = 474 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-11
Identities = 89/368 (24%), Positives = 138/368 (37%), Gaps = 99/368 (26%)
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI---ELKVLALKGSYHGDTLGAMEA 526
G+ A+E A+K+A RK+ + K I + +++ KG++HG TLGA+
Sbjct: 103 GAEAVETAIKLA-RKWGYK-------------VKGIPENQAIIVSAKGNFHGRTLGAISM 148
Query: 527 QA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585
P T F G ++ YN
Sbjct: 149 STDPDSRTNF---------GPYVPGFKKIPYN---------------------------- 171
Query: 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645
+ L L++ G V A I+EP+ AG + D ++
Sbjct: 172 ------NLEALEEA---------LEDHGPNVC----AFIVEPIQGEAGVVVPDDGYLKK- 211
Query: 646 LVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
V+E C + +I DE+ TG R G D PDI GK L+GGV P++A LA
Sbjct: 212 -VRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLAD 270
Query: 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764
+ V + K HG +Y + L CA A +++ ++ + N I R+
Sbjct: 271 DDVMLTI------KPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRD--Q 322
Query: 765 LELIQQISSHRTVQRVVALGTLCAIEL--QAAGCNAGYGSLYAASLLKKLREDGVYMRPL 822
L+ + + V G L AI + G A L KL+E G+ +P
Sbjct: 323 LKKLP----KPIITEVRGRGLLNAIVIDESKTGRT-------AWDLCLKLKEKGLLAKPT 371
Query: 823 -GNVIYLM 829
GN+I L
Sbjct: 372 HGNIIRLA 379
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + +IFDEV TGF R+ + +
Sbjct: 196 IAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEY 251
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 252 FGVEPDLTTLGKIIGGG-LPVGA 273
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG E V + +EE +SPHLAA E GV D +E + LR L +
Sbjct: 55 RLSGLPLDY--EDVN--PYRFEEPLSPHLAAALE--GVAID---LEKISAALRR-LAQQY 104
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ L +VE AGG+ P DL + +LP ILV +LG I+ T+ E+
Sbjct: 105 D--------LVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156
Query: 274 LKLRGYDVVAVVFEDHGLVNEVPL------MSYLRNR--VPVL-VLPPLPQDSSNDLMEW 324
++ RG + V + P ++ L P+L LP L + E+
Sbjct: 157 IRARGLPLAGWVA---NGIPPEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEY 213
Query: 325 FD 326
D
Sbjct: 214 LD 215
|
Length = 222 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A+I+EPV G +V P F L + + +IFDEV TGF R+ +
Sbjct: 199 DDIAAVIVEPVAGNMG---VVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQ 254
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAA 735
G PD+ GK++ GG+ P+ A + + + L + + S + L AA
Sbjct: 255 GYYGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQL---APLGPVYQAGTLSGNPLAMAA 310
Query: 736 AAKSIK 741
+++
Sbjct: 311 GLATLE 316
|
Length = 432 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 8e-10
Identities = 43/128 (33%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ DP F + L + C +IFDEV TG R G G
Sbjct: 182 AVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAKSI 740
PDI K L GG P+ A L T + VG HG +Y + L CA A K +
Sbjct: 241 PDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGT-------HGTTYGGNPLACAVAGKVL 292
Query: 741 KWFKDPQT 748
P+
Sbjct: 293 DLVNTPEL 300
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
G A+ +EPV GG++ F + L C ++FDEV G R G
Sbjct: 164 QKGKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAH 222
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCA 734
+ G PDI K L GG +P+ A L T V + GD HG +++ L C
Sbjct: 223 EAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD-------HGSTFAGGPLVCN 274
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791
AA + P ++ + LREL L +++ + V+ V +G L I+L
Sbjct: 275 AALAVLDKISKPGFLASVAKKGEYLREL----LRRKLGGNPHVKEVRGVGLLVGIQL 327
|
Length = 382 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 90/394 (22%), Positives = 148/394 (37%), Gaps = 107/394 (27%)
Query: 440 NVYEPAL--ECAELLLQG-VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
N++ +L E A LL + G +F ++G+ A E ALK+A RK +
Sbjct: 66 NLFTNSLQEEVASLLAENSAGD----LVFFCNSGAEANEAALKLA-RKHTGKS------- 113
Query: 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556
K++ + S+HG T G M A TG Q+ G G P
Sbjct: 114 -----------KIVTFEQSFHGRTFGTMSA------TG--QEKIKEGFG-----PL---- 145
Query: 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616
LP + + V DI + E + ++A++
Sbjct: 146 -------LPGFTH---VPFNDI------KALKEVMN-EEVAAV----------------- 171
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
++E VV GG+ DP F + + C+ +I DEV TG R G +
Sbjct: 172 -------MLE-VVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYE 223
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736
G PDI K L G IP+ A + + +F S HG ++ + L AAA
Sbjct: 224 QFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGS------HGSTFGGNPLAMAAA 276
Query: 737 AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796
+ ++ K P + + + L +++ V+ + G + IE
Sbjct: 277 KEVLQVIKQPSFLEEVQEKGEYFLQK----LQEELEHLECVKNIRGKGLMIGIECTEE-- 330
Query: 797 NAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLM 829
A ++++LRE+G+ + G NVI L+
Sbjct: 331 --------VAPVIEQLREEGLLVLSAGPNVIRLL 356
|
Length = 377 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 92/371 (24%), Positives = 135/371 (36%), Gaps = 83/371 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE + AE L + ++ F ++G+ A+E A+K+A R ++
Sbjct: 62 VAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYT-- 118
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
G+ V+A +HG T M A P+ SG G F
Sbjct: 119 --------GRPG--------VVAFDHGFHGRTNMTMALTAKV-------MPYKSGFGPF- 154
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ LP + Y + K + S D R I+ + N
Sbjct: 155 -APEVYR------APLP-YPYRDGLLDKQL---STDGELAAARA------IFVIDVGANN 197
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
+ AL+IEPV GG + F L+ C+ I I DEV TGF R
Sbjct: 198 V-----------AALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR 245
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS-FVGDSKLKALLHGHSYS 727
G + G PD+ K L G +PL+ + D+ G G +Y+
Sbjct: 246 TGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAPGGL-------GGTYA 297
Query: 728 AHALGCAAAAKSIKWFKDPQTNHNIIPE-------RRILRELWDLELIQQISSHRTVQRV 780
+ L CAAA + II R+I R + D L + + V
Sbjct: 298 GNPLACAAALAVL----------AIIESEGLIERARQIGRLVTD-RLTTLKAVDPRIGDV 346
Query: 781 VALGTLCAIEL 791
LG + A+EL
Sbjct: 347 RGLGAMIAVEL 357
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 23/209 (11%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++E +V G+ D F + L CQ I +I DEV TG R G + G
Sbjct: 168 AVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE 226
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741
PDI K L GV P+ A LA +++ +F S HG ++ + L AAA+ ++
Sbjct: 227 PDIFTLAKGLANGV-PVGAMLAKSSLGGAFGYGS------HGSTFGGNKLSMAAASATLD 279
Query: 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801
+ L+E +L + + TV V LG + IE A
Sbjct: 280 IMLTAGFLEQALENGNYLQE----QLQKALQDKETVTTVRGLGYMIGIETTAD------- 328
Query: 802 SLYAASLLKKLREDGVYMRPLG-NVIYLM 829
+ L++ R+ G+ + G NVI L+
Sbjct: 329 ---LSQLVEAARDKGLIVLTAGTNVIRLL 354
|
Length = 375 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 8e-09
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-- 677
A++IEP+ GG+ F + L + C + +IFDEV G R T L
Sbjct: 176 TAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGR-----TGKLFA 229
Query: 678 ---LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCA 734
G PDI K + GG PL A LAT + HG +Y + L A
Sbjct: 230 HEWAGVTPDIMAVAKGIGGG-FPLGACLATEEA------AKGMTPGTHGSTYGGNPLAMA 282
Query: 735 AA 736
Sbjct: 283 VG 284
|
Length = 389 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 101/408 (24%), Positives = 149/408 (36%), Gaps = 95/408 (23%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
RF H YE + AE L V +A + F G+ A+E A+K+A
Sbjct: 71 RFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA--------- 121
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T + V+A G +HG T M TG + P+ G G
Sbjct: 122 -------RAATGRS---AVIAFGGGFHGRTFMGMS------LTGKVV-PYKVGFGA---- 160
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
M + + P L+ VE + + D++F + D +A+I
Sbjct: 161 ----MMPDVYHVPFPVELHGVSVEQ---SLAALDKLFKADVDPQRVAAI----------- 202
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + F + L + C I +I DEV TGF R G
Sbjct: 203 -------------IIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG 248
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730
+ D+ K L GG PLAA + D+ G L G +Y +
Sbjct: 249 KLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDA-PGPGGL-----GGTYGGNP 301
Query: 731 LGCAAAAKSIKWFKDPQTNH--NIIPERRILRELWDLELIQQISSHR-TVQRVV---ALG 784
LG AAA + ++ N + R L Q+++S R TV + G
Sbjct: 302 LGIAAAHAVLDVIEEEDLCERANQLGNR----------LKQRLASLRETVPEIADIRGPG 351
Query: 785 TLCAIELQAAGC---NAGYGSLYAASLLKK---LREDGVYMRPLGNVI 826
+ A+E A +A + + L+K L GV+ GNVI
Sbjct: 352 FMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVH----GNVI 395
|
Length = 425 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ-----GPDAT 416
W P TQ K E + ++ GE +Y ++ DA +SWW P
Sbjct: 23 WHPCTQMK--HHERLPLLPVARGEGAWLYDRDGRRY----LDAISSWWVNLFGHANPRIN 76
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
++ D H M +EPA+E AE L G G A+F+ +G++A+EI
Sbjct: 77 AALKDQLDT------LEHAMLAGCTHEPAIELAERLAALTG-GTLGHAFFASDGASAVEI 129
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
ALKM+F + + + + + L YHG+T+GA+
Sbjct: 130 ALKMSFHAWR-------------NRGRGDKREFVCLANGYHGETIGAL 164
|
Length = 453 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 2e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EPV AG M +V P F L + C +IFDEV TGF R+ +
Sbjct: 198 IAAVIVEPV---AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGY 253
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 254 YGVTPDLTTLGKIIGGG-LPVGA 275
|
Length = 426 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EP+ GG+ P F + L + C +IFDEV TG R G G
Sbjct: 187 AVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVT 245
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAKSI 740
PDI K L GG P+ A L T + F VG HG +Y + L CA A
Sbjct: 246 PDILTSAKALGGG-FPIGAMLTTAEIASHFKVG-------THGSTYGGNPLACAVAEAVF 297
Query: 741 KWFKDPQT 748
P+
Sbjct: 298 DIINTPEV 305
|
Length = 403 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 24/181 (13%)
Query: 620 IGALIIEPVVHAAGGMHMVD----PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+ + EP AGGM P QRI C+ + + DEV GF R G
Sbjct: 223 VAGFVAEPF-QGAGGMIFPPESYWPEIQRI----CRQYDVLLCADEVIGGFGRTGEWFAH 277
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAA 735
+ G PD K LT G +P+ + + + ++ V + A HG +YS H + A
Sbjct: 278 EHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFA--HGLTYSGHPVAAAV 335
Query: 736 AAKSIKWFKDP----QTNHNIIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCAIE 790
A ++K +D + + P +R LRE++ H V V G + A++
Sbjct: 336 AIANLKALRDEGVVTRVKDDTGPYLQRCLREVF--------GDHPLVGEVQGAGLVAALQ 387
Query: 791 L 791
Sbjct: 388 F 388
|
Length = 460 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 82/363 (22%), Positives = 141/363 (38%), Gaps = 66/363 (18%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
++ H F +YEP +E AE L + + F ++G+ A+E A+K+A RK++
Sbjct: 83 VDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIA-RKYT-K 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ F +G +HG TL M + +P+ G G F
Sbjct: 141 RQGIISFS----------------RG-FHGRTLMTMTMTSKV-------KPYKFGFGPF- 175
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ + PE +T D+ EE + ++ + I+
Sbjct: 176 -APEVYKAPFPYEYRRPE----------GLTEEQYDDFMIEEFKNFFISEVAPETIA--- 221
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A+++EPV GG + F + + C I + DE+ TGF R
Sbjct: 222 -------------AVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFAR 267
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728
G + VPD+ K L GV P++ + + D +L G +Y+
Sbjct: 268 TGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEIMDE-SAPGEL-----GGTYAG 320
Query: 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
LGCAAA + + N I +++ + E+ + + + V LG +CA
Sbjct: 321 SPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRF-EEMKNK---YNCIGDVRGLGAMCA 376
Query: 789 IEL 791
EL
Sbjct: 377 FEL 379
|
Length = 451 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ D F + L + C +IFDEV TG R G G
Sbjct: 186 AVIVEPIQ-GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 244
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAK 738
PD+ K L GG P+ A L T VG HG +Y + L A A K
Sbjct: 245 PDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGT-------HGTTYGGNPLASAVAGK 294
|
Length = 406 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLAT 704
C+ I + DEV TGF R T L C VPD+ K LT G +P+ A L +
Sbjct: 245 CRELGILFVADEVITGFGR-----TGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMS 299
Query: 705 NAVFDSFVGDSKLKALL-HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763
+ V+ + A + HG++YSAH + A + ++ + + N ++ R
Sbjct: 300 DHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLAN--GQKAGPRFAA 357
Query: 764 DLELIQQISSHRTVQRVVALGTLCAIEL 791
L+ + +H V V G L A+EL
Sbjct: 358 GLD---ALRAHPLVGDVRGRGLLGALEL 382
|
Length = 459 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG + S EL+ + ++E +SPHLAAE E G + +E L + LR L+
Sbjct: 58 RLSGLDLSY--ELIN--PYRFKEPLSPHLAAELE-----GRTIDLEKLSQGLRQLLK--- 105
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
K +++ +VE AGG+ P DL +LP ILV +LG I+ T+ E+
Sbjct: 106 -----KYDLV-LVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEA 159
Query: 274 LKLRGYDVVAVVF 286
L+ RG + V
Sbjct: 160 LRARGLPLAGWVA 172
|
Length = 223 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A GHV N++ EP + AE L++ +G R +F ++G+ A E A K+A
Sbjct: 72 LATLGHV---SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-- 126
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
G+ K++A +G +HG T+GA+
Sbjct: 127 ----------GRT--------KIVAAEGGFHGRTMGAL 146
|
Length = 398 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 21/260 (8%)
Query: 601 SSYISQNLLQNPGLKVSGCI--GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
S +N +++ SG A+I+E + GG+ + + + + + I +I
Sbjct: 189 SIEYFENFIEDVE---SGVDKPAAVILE-AIQGEGGVVAAPSEWLQKIREVTRKHDIKLI 244
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
DEV GF R G + G PD K + GG +PLA L FD++
Sbjct: 245 LDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAWQPAG--- 299
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
H ++ + L +++ ++KD N ER + ++I++ V+
Sbjct: 300 ---HTGTFRGNQLAMVTGTEALNYWKDDNLAQN-AQERGERITSFLDDMIKEHPCIGNVR 355
Query: 779 -RVVALGTLCAIELQAAGCNAGY--GSLYAASLLKKLREDGVYMRPLG---NVIYLMCGP 832
R + G + E Q+ Y AA++ E+G+ + G V L+C
Sbjct: 356 GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPI 415
Query: 833 CSSPEVCSQLLLKLYQRLEE 852
E C + + + Q +EE
Sbjct: 416 TIDQEECEEGISRFKQAVEE 435
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
T + +T +GKT+VS GL + K Y KPIQ+G D DS + +L
Sbjct: 2 TIFVTGTDTGVGKTVVSLGLVRAL------KRGVKVGYWKPIQSGLVDDGDSELV-KRLL 54
Query: 99 SLSLRRNFPSSLILS 113
L R P LS
Sbjct: 55 GLDQTREHPEPYRLS 69
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+A+ +SPH+AA++E + D + + L + + K + + +VE AGG
Sbjct: 65 YAFALPLSPHIAADQEGRPI--DLEELS-------KHLRTLEQ----KYDFV-LVEGAGG 110
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVV 285
+ P DL + +LP ILV +LG I+ T+ E + G + V+
Sbjct: 111 LCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVI 164
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 166 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EPV GG+ F + L + + +I DEV TG R G +L G
Sbjct: 182 AVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAA 735
PDI GK + GGV PLAA LA V F GD G +Y+ + L A
Sbjct: 241 PDIMTLGKGIGGGV-PLAALLAKAEV-AVFEAGD-------QGGTYNGNPLMTAV 286
|
Length = 395 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 622 ALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A ++EP+ AG + P F + + C+ + I DE+ TG R G D
Sbjct: 189 AFLVEPIQGEAG---INIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ GK L GGV P++ A + F S HG ++ + L CA + +
Sbjct: 246 VTPDMYILGKALGGGVFPISCVAANRDILGVFTPGS------HGSTFGGNPLACAVSIAA 299
Query: 740 IKWFKDPQTNHNIIPERRILRELWD--LELIQQISSHRTVQRVVALGTLCAIELQAA 794
++ ++ + +PER + EL + E +++I + ++ V G +EL
Sbjct: 300 LEVLEEEK-----LPERSL--ELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNEP 348
|
Length = 396 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-07
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA A+ L+ G YF GS A+E ALK+A R++ F+ +
Sbjct: 73 EPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLA-RQY---------FVEIGQPQ 121
Query: 503 KCIELKVLALKGSYHGDTLGAMEA 526
+ +A + SYHG+TLGA+
Sbjct: 122 R---RHFIARRQSYHGNTLGALAI 142
|
Length = 443 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDE 661
I Q ++ + G +V+G +I EP+ M +V P F +++ C+ I DE
Sbjct: 190 IFQTVMNSLGHRVAG----VIFEPI---CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDE 242
Query: 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
V TGF R+ A + PDI YGK+L GG +P AA +A ++ D
Sbjct: 243 VVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMD 288
|
Length = 433 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 21/210 (10%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+IIEP+ GG + F L++ C+ + I DEV TGF R G + G V
Sbjct: 222 AVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIV 280
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741
PD+ K + GG +PL+A + D+ L G +Y + + CAAA +I+
Sbjct: 281 PDLITTAKGIAGG-LPLSAVTGRAEIMDA-PHPGGL-----GGTYGGNPVACAAALAAIE 333
Query: 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801
+ +++ R + L L + + V G + AIEL G
Sbjct: 334 TIE----EDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDA 389
Query: 802 SLYAASLLKKLREDGVYMRPLGNVIYLMCG 831
L +L G VI L CG
Sbjct: 390 EL-TKALAAAAHAAG--------VIVLTCG 410
|
Length = 443 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 620 IGALIIEPVVHAAGGMHMVDP---LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+ AL EP+ AG M+ P F++ L K I ++ DEV +G R G +
Sbjct: 205 VAALFAEPIQGDAG---MIVPPEDYFKK-LKKILDEHGILLVVDEVQSGLGRTGKWFAIE 260
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736
G PDI GK L GG +P++AT+ + DS L L H + S + + AAA
Sbjct: 261 HFGVEPDIITLGKPLGGG-LPISATIGRAEIMDS------LPPLAHAFTLSGNPVASAAA 313
Query: 737 AKSI 740
I
Sbjct: 314 LAVI 317
|
Length = 443 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A ++EP+ AG + F R V+E C + +I DE+ TG R G + G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTR--VRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI 247
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740
D+ GK L+GG P++A L+ + V LK HG ++ + L CA A ++
Sbjct: 248 EADVTLIGKALSGGFYPVSAVLSNSEVL------GVLKPGQHGSTFGGNPLACAVARAAL 301
Query: 741 K 741
K
Sbjct: 302 K 302
|
Length = 401 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAG--GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+V G G+ P F + + VI+DEV T F R DL
Sbjct: 201 VAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDL 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 257 LGVEPDLTALGKIIGGG-LPIGA 278
|
Length = 428 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I A+I+EPVV +G + + F L + + ++FDEV TGF R+ +
Sbjct: 245 GEIAAVILEPVVGNSGFI-VPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEY 302
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 303 FGITPDLTTLGKVIGGG-LPVGA 324
|
Length = 474 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+++EP+ GG ++ P F L C I +I DEV TGF R G +
Sbjct: 199 VAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYD 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +P++A + V D+
Sbjct: 258 VKPDLITMAKSLGGG-MPISAVVGRAEVMDA 287
|
Length = 421 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ A W FT+H + V VI GE ++ D+ +++ D A +
Sbjct: 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIV--RGEGCYIWDDRGKRYL----DGLAGLFV- 63
Query: 412 GPDATLQI-----ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRA 464
+Q+ ELA A FP Y PA+E AE L + G +R
Sbjct: 64 -----VQVGHGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERL-AALAPGDLNRV 115
Query: 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
+F+ GS A+E A K+A + F GK K I + +YHG T GA+
Sbjct: 116 FFTTGGSEAVESAWKLAKQYFKL--------TGKPGKHKVISRAI-----AYHGTTQGAL 162
|
Length = 460 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
EL + + A + H+ N Y EP L A+ L V +A + +F ++G+ A E A
Sbjct: 55 ELVKALIEQADKLWHI---GNGYTNEPVLRLAKKL---VDATFADKVFFCNSGAEANEAA 108
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GFL 536
LK+A R+++ D G D +E ++A K S+HG TL + Y+ GF
Sbjct: 109 LKLA-RRYALDK------HGADKSE------IVAFKNSFHGRTLFTVSVGGQPKYSQGFA 155
Query: 537 QQP 539
P
Sbjct: 156 PLP 158
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A HV NVY P +E A+ L V +A R +F ++G+ A E A+K A RK+
Sbjct: 44 AGTLAHV---SNVYHTIPQVELAKRL---VASSFADRVFFCNSGTEANEAAIKFA-RKY- 95
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
V E ++ S+HG TLGA+
Sbjct: 96 --QRVRAPDKKDPAASSATEF--VSFSNSFHGRTLGAL 129
|
Length = 382 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I I EP+ G H P F R + C +IFDEV TG G LG
Sbjct: 219 IACFIAEPIQGEGGDNHF-RPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 277
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 278 VQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 18/84 (21%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
NV+ EPAL A+ L + +A R +F+++G+ A E A K+A R+++ D G
Sbjct: 77 NVFTNEPALRLAKKL---IDATFAERVFFANSGAEANEAAFKLA-RRYACDR------HG 126
Query: 498 KDTTEKCIELKVLALKGSYHGDTL 521
+ TE ++A S+HG TL
Sbjct: 127 PEKTE------IIAFHNSFHGRTL 144
|
Length = 403 |
| >gnl|CDD|239383 cd03109, DTBS, Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 225 IVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAV 284
+VE AGG+ P D+ + LP ILV LG I+ E+ +++G + V
Sbjct: 43 LVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGV 102
Query: 285 VFEDHGLVNEVPLMSYLRNRVPVLVLPPLP 314
+ E + + +P L
Sbjct: 103 LGNVIVE-KEGLATLNVETIERLTGIPVLG 131
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. Length = 134 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
L + A++F H N Y EP L A+ L+ +A R +F ++G+ A E A
Sbjct: 59 ALREALNEQASKFWHT---GNGYTNEPVLRLAKKLIDAT---FADRVFFCNSGAEANEAA 112
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537
LK+A RK++ D G + ++A K ++HG TL + A
Sbjct: 113 LKLA-RKYAHDR------YGSHKSG------IVAFKNAFHGRTLFTVSAGG--------- 150
Query: 538 QPWYS 542
QP YS
Sbjct: 151 QPKYS 155
|
Length = 406 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ ++IE + GG+ P + L K C+ I D++ G R G ++
Sbjct: 208 VACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFN 266
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ +GK L GG +P++A + + +S L+A H + A+ + CAAA +
Sbjct: 267 ITPDLMSFGKSLAGG-MPMSAIVGRKEIMES------LEAPAHLFTTGANPVSCAAALAT 319
Query: 740 IKWFKD 745
I +D
Sbjct: 320 IDMIED 325
|
Length = 445 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 29/122 (23%)
Query: 429 AARFGHVMFPENVYE-PALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N+Y P E AE L V +A + +F+++G+ A+E A+K A R++
Sbjct: 60 AEKLWHV---SNLYRIPEQERLAERL---VENSFADKVFFTNSGAEAVECAIKTA-RRYH 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT--------GFLQQ 538
+ GK E+ +++ +G++HG TL + A Y GF Q
Sbjct: 113 Y---------GKGHPER---YRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQV 160
Query: 539 PW 540
P+
Sbjct: 161 PF 162
|
Length = 389 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG---YPHDSDSRFLFTKLPSLSL 102
+T +GKT+VSA L KP+QTG +SD+ L +L L L
Sbjct: 11 DTGVGKTVVSAAL-----AQALKQQGYSVAGYKPVQTGSEETAENSDALVL-QRLSGLDL 64
Query: 103 RRNFPSSLILS 113
+
Sbjct: 65 SYELINPYRFK 75
|
Length = 223 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG------FW---RLG 670
I I EP+ GG + P F + + C +IFDEV TG W +LG
Sbjct: 226 IACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 284
Query: 671 VETTADLLGCVPDIACYGK 689
V PDI +GK
Sbjct: 285 VR---------PDIVAFGK 294
|
Length = 443 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 863 | |||
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| PF13500 | 199 | AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.98 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.98 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 99.97 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.97 | |
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 99.96 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.96 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.96 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.96 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.94 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 99.93 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.93 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.91 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.91 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 99.91 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.9 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 99.9 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.9 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 99.89 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.89 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 99.88 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.88 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 99.87 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.86 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 99.86 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 99.86 | |
| cd03109 | 134 | DTBS Dethiobiotin synthetase (DTBS) is the penulti | 99.85 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.84 | |
| PRK05632 | 684 | phosphate acetyltransferase; Reviewed | 99.83 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.81 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 99.78 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.77 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.74 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.73 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.7 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.67 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.66 | |
| PLN02721 | 353 | threonine aldolase | 99.66 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.65 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.64 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.64 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.63 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.62 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.62 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.61 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.6 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.6 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.59 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.58 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.56 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.56 | |
| PRK07324 | 373 | transaminase; Validated | 99.56 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.56 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.56 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.56 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.55 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.55 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.54 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.53 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.53 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.52 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.51 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.51 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.51 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.51 | |
| COG0857 | 354 | Pta BioD-like N-terminal domain of phosphotransace | 99.51 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.51 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.51 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.5 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.5 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.49 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.49 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.48 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.48 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.47 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.47 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.47 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.47 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.47 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.47 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.47 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.47 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.47 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.46 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.46 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.46 | |
| PLN02656 | 409 | tyrosine transaminase | 99.46 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.46 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.46 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.46 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.45 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.45 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.45 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.45 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.45 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.45 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.45 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.45 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.45 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.44 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.44 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.44 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.44 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.43 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.43 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.43 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.43 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.43 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.42 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.42 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.42 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.42 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.42 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.42 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.42 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.42 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.42 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.41 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.41 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.41 | |
| PLN02187 | 462 | rooty/superroot1 | 99.41 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.41 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.39 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.39 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.39 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.39 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.39 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.39 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.38 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.38 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.37 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.36 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.36 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.36 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.35 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.35 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.34 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.34 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.34 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.34 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.34 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.33 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.33 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.33 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.32 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.32 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.31 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.3 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.3 | |
| PLN02651 | 364 | cysteine desulfurase | 99.3 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.3 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.29 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.29 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.29 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.28 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.28 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.27 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.26 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.26 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.25 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.25 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.24 | |
| PLN02231 | 534 | alanine transaminase | 99.23 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.23 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.22 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.21 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.21 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.21 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.21 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.21 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.2 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.2 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.2 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.19 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.18 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.17 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.15 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.13 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.12 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.11 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.1 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.08 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.07 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.07 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.06 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.06 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.04 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.04 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.04 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.03 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.03 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.02 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.02 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.02 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.02 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.02 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.01 | |
| PLN02397 | 423 | aspartate transaminase | 99.01 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.01 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.0 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.0 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.99 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.99 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.99 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 98.96 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.94 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 98.93 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 98.93 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.92 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 98.92 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.92 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 98.91 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.91 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 98.91 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.91 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 98.91 | |
| PLN02368 | 407 | alanine transaminase | 98.91 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.89 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.89 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 98.87 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 98.87 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.87 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 98.85 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 98.84 | |
| PLN02509 | 464 | cystathionine beta-lyase | 98.84 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.82 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 98.82 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.82 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 98.79 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.79 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 98.78 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.75 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 98.74 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.74 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 98.74 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.73 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.67 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.64 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 98.62 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.62 | |
| PLN02880 | 490 | tyrosine decarboxylase | 98.61 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 98.61 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 98.6 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 98.6 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 98.6 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 98.59 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.59 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 98.59 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.56 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.55 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 98.55 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.54 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.52 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 98.51 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 98.51 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 98.5 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.49 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.49 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.47 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.46 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.45 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.4 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 98.39 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 98.37 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.36 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 98.34 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 98.33 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.31 | |
| PLN02263 | 470 | serine decarboxylase | 98.25 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 98.25 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.22 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.22 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 98.21 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 98.2 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.18 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 98.17 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 98.11 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 98.1 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 98.07 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.03 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 98.01 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 98.01 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.94 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 97.93 | |
| cd02033 | 329 | BchX Chlorophyllide reductase converts chlorophyll | 97.91 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 97.89 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 97.89 | |
| COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [C | 97.88 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 97.86 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 97.84 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 97.8 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.8 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 97.8 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 97.74 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.73 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.67 | |
| PLN02452 | 365 | phosphoserine transaminase | 97.64 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 97.62 | |
| PRK11670 | 369 | antiporter inner membrane protein; Provisional | 97.6 | |
| PRK11519 | 719 | tyrosine kinase; Provisional | 97.58 | |
| TIGR02016 | 296 | BchX chlorophyllide reductase iron protein subunit | 97.56 | |
| PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinas | 97.55 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.53 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 97.5 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 97.45 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 97.39 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.33 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 97.32 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.3 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 97.28 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 97.18 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 97.13 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 97.09 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.08 | |
| KOG3022 | 300 | consensus Predicted ATPase, nucleotide-binding [Ce | 97.08 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 97.07 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 97.05 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 97.01 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 97.01 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 97.01 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 96.94 | |
| COG0455 | 262 | flhG Antiactivator of flagellar biosynthesis FleN, | 96.89 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 96.89 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.86 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 96.86 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 96.82 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 96.8 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.79 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.78 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 96.77 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 96.74 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.71 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 96.68 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 96.68 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 96.67 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 96.65 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 96.64 | |
| TIGR00176 | 155 | mobB molybdopterin-guanine dinucleotide biosynthes | 96.59 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 96.58 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 96.56 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 96.52 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 96.51 | |
| PRK13236 | 296 | nitrogenase reductase; Reviewed | 96.47 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 96.46 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 96.45 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.39 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 96.25 | |
| PF07755 | 301 | DUF1611: Protein of unknown function (DUF1611); In | 96.25 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 96.24 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 96.19 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 96.17 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.15 | |
| COG3367 | 339 | Uncharacterized conserved protein [Function unknow | 96.13 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.12 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 96.08 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 96.04 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 96.03 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 96.01 | |
| PRK14495 | 452 | putative molybdopterin-guanine dinucleotide biosyn | 95.98 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 95.89 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 95.84 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.82 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 95.79 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 95.64 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 95.63 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 95.58 | |
| PRK13234 | 295 | nifH nitrogenase reductase; Reviewed | 95.55 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 95.51 | |
| PF06564 | 243 | YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p | 95.46 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 95.41 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.37 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 95.32 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 95.18 | |
| PF00142 | 273 | Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot | 95.08 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 94.94 | |
| PRK13886 | 241 | conjugal transfer protein TraL; Provisional | 94.94 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only | 94.91 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 94.87 | |
| COG1348 | 278 | NifH Nitrogenase subunit NifH (ATPase) [Inorganic | 94.86 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 94.84 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 94.6 | |
| cd03113 | 255 | CTGs CTP synthetase (CTPs) is a two-domain protein | 94.57 | |
| PRK14491 | 597 | putative bifunctional molybdopterin-guanine dinucl | 94.5 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 94.39 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 94.22 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 94.11 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 93.91 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 93.65 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.93 | |
| KOG2749 | 415 | consensus mRNA cleavage and polyadenylation factor | 92.64 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 92.64 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 92.36 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 92.35 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 92.03 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 92.0 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 91.96 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 91.84 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 91.65 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 91.5 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.09 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 90.93 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 90.57 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 90.32 | |
| PF02374 | 305 | ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ | 90.2 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 90.15 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 90.04 | |
| PRK06749 | 428 | replicative DNA helicase; Provisional | 89.81 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 89.75 |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-128 Score=1158.67 Aligned_cols=796 Identities=62% Similarity=1.005 Sum_probs=658.9
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccC
Q 002941 26 FHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRN 105 (863)
Q Consensus 26 ~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~ 105 (863)
++.....++++.+++||||||||||||+||++|++++. ++|.+|.|+||||||++.++|+.++.+.+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~-----~~g~~~~y~KPvqTG~~~~~Da~~v~~~~~~~~~~-- 88 (817)
T PLN02974 16 SSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAAAA-----SRRSPVLYVKPVQTGFPDDSDARFVFRKADSLSRR-- 88 (817)
T ss_pred CCcccccccCCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCceEEEEEEECCCCCCccHHHHHHhhhccccc--
Confidence 34467778889999999999999999999999999999 89999999999999999899999998875443222
Q ss_pred CCccccccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHh
Q 002941 106 FPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE 185 (863)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~ 185 (863)
-.++..+|+.|.+++.+. +.+.....+.. +++-.|+ ...+.....+..+.++|.|++|+|||+|++
T Consensus 89 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~------g~~~~~~~~~~~~~~~~~~~~p~SPhlAA~ 154 (817)
T PLN02974 89 -SESLFASNRTLFLSPPAA-KSALGGVSSMG------AHAAVNA------GAEAGVTSSALWCHTLFAWRRAVSPHLAAR 154 (817)
T ss_pred -cccccccccccccccccc-ccccccccccc------ccccccc------ccccccccccccccCceecCCCCCHHHHHH
Confidence 245677899999888877 33322222222 1111111 111111234456789999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHH
Q 002941 186 RESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGIS 265 (863)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~ 265 (863)
++ +..+++++|.+.++++++++ ++.+..+.+|++|||||||++||++++.+++||++.+++|||||++.+||+||
T Consensus 155 ~e-g~~i~~~~i~~~~~~~l~~~----~~~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~IN 229 (817)
T PLN02974 155 RE-GRGVSDDEVLEAVNRSLREV----GANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGIS 229 (817)
T ss_pred Hh-CCCCCHHHHHHHHHHHHHhh----hcccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHH
Confidence 99 99999999999998866543 11122345799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhcCCCCeeecCCCCCCCchhhhhhhhhccchHHHHHHHHHHHHHH
Q 002941 266 GTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSE 345 (863)
Q Consensus 266 ~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~~~~pvl~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~ 345 (863)
||++++++|+.||++|.|||+|+...+|..+|++++++++||+++|+.|.....++.+|++...+.+..+++.+.+++.+
T Consensus 230 htllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~~~pv~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (817)
T PLN02974 230 ATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSG 309 (817)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhcCCcEEeCCCCCCCcchhHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999988999999999999888889999999999999999999999999
Q ss_pred HhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccce----EEEEcCCCcccceEEeeecccccccCCCCCcHHH
Q 002941 346 RIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENF----SVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421 (863)
Q Consensus 346 r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~----~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V 421 (863)
|.+++..|.+++++++|||||++..+...++.+|++ ++|. |++|.+|+..+.+|||+++|||++++||++||+|
T Consensus 310 r~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~--a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I 387 (817)
T PLN02974 310 RLQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDS--RCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPEL 387 (817)
T ss_pred HhHHHHHHHHHHhhhccCCcccccccCCCCceEEEe--eecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHH
Confidence 999999999999999999999998876667899998 5666 9999998523458999999999999996589999
Q ss_pred HHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcc
Q 002941 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (863)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~ 501 (863)
++|+++|++++.|+++..+.|+++.+|||+|++..|.+++++|||++|||||||+|||||+|+|+.++|++++..+.++.
T Consensus 388 ~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~ 467 (817)
T PLN02974 388 ARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRG 467 (817)
T ss_pred HHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 99999999999999877789999999999999966545578999999999999999999976687777753210000000
Q ss_pred ccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccc
Q 002941 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC 581 (863)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 581 (863)
....|.+||++++||||.|+|+|++++.+.|++.+..+|+.+++.++++|.++++++.+++++|..++..... ...+|.
T Consensus 468 ~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~ 546 (817)
T PLN02974 468 GDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEG-EETTWE 546 (817)
T ss_pred ccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccc-cccccc
Confidence 0012489999999999999999999998878766556787777888888887766778888887654210000 000111
Q ss_pred cccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEec
Q 002941 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (863)
Q Consensus 582 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DE 661 (863)
+..+.|+..++..++...+.+.+++.|++....+++++|||||+|||+||.||+++||++|+++|+++|++||++||+||
T Consensus 547 ~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DE 626 (817)
T PLN02974 547 SRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDE 626 (817)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEee
Confidence 11122332223344556667888888875433345788999999996699999999999999999999999999999999
Q ss_pred ccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHH
Q 002941 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (863)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~ 741 (863)
|+|||||||++|+++++|++|||+|+||+|||||+|+|++++++++++.|....+...+.|++||+|||++||||+|+|+
T Consensus 627 V~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~ 706 (817)
T PLN02974 627 VFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQ 706 (817)
T ss_pred cccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999643222457899999999999999999999
Q ss_pred HhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEE
Q 002941 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMR 820 (863)
Q Consensus 742 ~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~ 820 (863)
+++++++.+++.++++++.+.|.+.+.+.+.++|.|++|||.|+|++|+|+++....++....+..+.+.|+ ++||+++
T Consensus 707 ~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r 786 (817)
T PLN02974 707 WYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYAR 786 (817)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEE
Confidence 999998889999999999998888876667789999999999999999998754233444456778899999 9999999
Q ss_pred ecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 821 PLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 821 p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.|++++++||++++++++++++++|++.|
T Consensus 787 ~~Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 787 PLGNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred ecCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998876
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-90 Score=771.27 Aligned_cols=436 Identities=31% Similarity=0.434 Sum_probs=377.8
Q ss_pred hcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc
Q 002941 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (863)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~ 436 (863)
+.+|+|||||++...... +.+|++ |+|+|+||.||+ +|||++|||||+++|| +||+|++|+++|++++.|++
T Consensus 9 d~~~~whP~t~~~~~~~~-~~~i~~--aeG~yl~d~~G~----r~lDg~sg~W~~~~Gh-~~~~i~~Ai~~Q~~~l~~~~ 80 (449)
T COG0161 9 DLSHLWHPFTQMRDPLAE-PRVIVR--AEGVYLTDIDGR----RYLDGMSGLWCVNHGH-GRPEIAEAIKKQLDKLPHVM 80 (449)
T ss_pred hhhheecccccccccccc-ceeeee--cceeEEEeCCCC----EEEecccHHHHhhcCc-CCHHHHHHHHHHHHhCCchh
Confidence 889999999999876555 788887 899999999999 9999999999999999 89999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCC
Q 002941 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (863)
Q Consensus 437 ~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sY 516 (863)
+.++++.|+++||++|++++|++.+++|||++|||||||+||||| ++||+.+|++ + |++||+++++|
T Consensus 81 ~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma-~qY~~~~G~p-~-----------r~~~Isr~~gY 147 (449)
T COG0161 81 FGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMA-LQYWRARGQP-Q-----------RKKFISRRNGY 147 (449)
T ss_pred hcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHH-HHHHHhcCCC-c-----------ceEEEEeccCc
Confidence 888899999999999999999544899999999999999999999 5799999875 2 38899999999
Q ss_pred ccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhH
Q 002941 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (863)
Q Consensus 517 HG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 596 (863)
||.|++++|+++....++. +++++. ++++|++.|+.|+.. .++. .+ .+.
T Consensus 148 HG~T~ga~Sv~g~~~~~~~-----------~~~~ll----~~~~~~~~P~~y~~~--------------~~~~-~~-~~~ 196 (449)
T COG0161 148 HGDTLGAMSVGGPVALRHA-----------FYDPLL----PEVLHLPAPYAYRRG--------------FFGE-GD-EEF 196 (449)
T ss_pred CcccchheeccCchhhhhh-----------hccccc----cCceecCCCcccccC--------------CCCC-Ch-HHH
Confidence 9999999999995543321 111111 356678888665311 0011 11 122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh
Q 002941 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 597 ~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
..+++.+|+.++ ..++++|||||+|||+|+.||+++||++||+++|++|++||||||+|||.|||||||++||++
T Consensus 197 -~~~a~~le~~i~----~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e 271 (449)
T COG0161 197 -AEAADELEALIL----EHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACE 271 (449)
T ss_pred -HHHHHHHHHHHH----hcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhh
Confidence 344566666665 467799999999999777799999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 677 ~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
++|++|||+|+||||+|||+|+||++++++|++.|.... ...|+||+||+|||++||||+|+|+++++++|++++.+.+
T Consensus 272 ~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~ 350 (449)
T COG0161 272 HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD-AGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIG 350 (449)
T ss_pred hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhccc-CCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999998764 5789999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCc
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 835 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t 835 (863)
.++.+.| .+.+..+|.|++|||.|+|.+||++.+. ++.+|......++.+.++++||++||.|+.+.++||+++|
T Consensus 351 ~~l~~~L----~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PPliit 426 (449)
T COG0161 351 AYLQAGL----QAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLMPPLIIT 426 (449)
T ss_pred HHHHHHH----HHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecCCEEEEcCCccCC
Confidence 8887755 4446788999999999999999999875 4555655567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l~ 854 (863)
++|||++++++.+++++..
T Consensus 427 ~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 427 REEIDELVDALREALDETL 445 (449)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-81 Score=681.53 Aligned_cols=376 Identities=28% Similarity=0.368 Sum_probs=331.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
++++++ |+|+|+||.+|+ +||||.+|++++++|| +||.|++|+++|++++.|.+ +.|.+++..+|+++|++.
T Consensus 25 ~~~~~~--G~G~~v~D~~G~----~YlDf~~Giav~~lGH-~hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~~ 96 (404)
T COG4992 25 PVVIVR--GEGAYVWDQQGR----EYLDFAAGIAVNNLGH-CHPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVEL 96 (404)
T ss_pred ceeEEe--ccccEEECCCCC----EeeeeccceeeeccCC-CCHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHhh
Confidence 356665 899999999999 9999999999999999 99999999999999999986 568999999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+| . .++|||+|||+||||+|||+| |+|+. + .+ |.+||+|.+||||+|++++|+|+++.|+..
T Consensus 97 s~-~-~d~vff~NSGaEA~EaAiKlA-Rk~~~--~--~~-----------k~~Iia~~nsFHGRT~galS~t~~~ky~~~ 158 (404)
T COG4992 97 SP-F-ADRVFFCNSGAEANEAALKLA-RKYTG--D--PE-----------KSKIIAFENSFHGRTLGALSATGQPKYRKG 158 (404)
T ss_pred Cc-c-ccEEEEcCCcHHHHHHHHHHH-HHHcC--C--CC-----------CcEEEEEcCCcCCccceeeeccCChhhccC
Confidence 98 3 789999999999999999999 67742 1 12 379999999999999999999999988754
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
|. |. + +++.++|+ +| .++++++++
T Consensus 159 F~--------Pl--~------~g~~~vpf--------------------------nD--------i~al~~ai~------ 182 (404)
T COG4992 159 FG--------PL--L------PGFRHVPF--------------------------ND--------IEALEAAID------ 182 (404)
T ss_pred CC--------CC--C------CCceecCC--------------------------CC--------HHHHHHHhc------
Confidence 31 11 1 23333332 34 355666664
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++||||+||| ||+||+++++++||+++|+||++||+|||+||||||+||||++|++||+|+.|||+|++|+||||
T Consensus 183 --~~taAvivEPI-QGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG- 258 (404)
T COG4992 183 --EDTAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG- 258 (404)
T ss_pred --cCeEEEEEecc-cCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCC-
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+||||+++++.+++.+... .|++||+|||++||++.|+|+++.++++.+++++.+.++.+ +|.++..++|
T Consensus 259 ~PigA~la~~~~~~~~~~G------~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~----~L~~l~~~~~ 328 (404)
T COG4992 259 FPIGAMLATEEIASAFTPG------DHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQ----RLRELKRRYP 328 (404)
T ss_pred ccceeeEEchhhhhcCCCC------cccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----HHHHHhhcCC
Confidence 8999999998778877653 59999999999999999999999999999998888888877 4466778899
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.|.+|||+|+|+++++..+. .+..+.+.|+++||++.+.+ +++||.||+++++||||+++++|++++..+.
T Consensus 329 ~v~~vRG~GLmiGiel~~~~--------~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 329 LVKEVRGRGLMIGIELKEPY--------RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred ceeeeecceeEEEEEecCcc--------cHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998752 36789999999999998765 8999999999999999999999999998765
Q ss_pred H
Q 002941 855 K 855 (863)
Q Consensus 855 ~ 855 (863)
.
T Consensus 401 ~ 401 (404)
T COG4992 401 A 401 (404)
T ss_pred h
Confidence 3
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-81 Score=699.43 Aligned_cols=405 Identities=25% Similarity=0.327 Sum_probs=348.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+|+||+||| +||||.+|+++.++|| |||+|++|+++|++++.|.+.....+++.++|||+|.+.
T Consensus 39 p~~~~r--a~G~~l~DvdG~----~ylDf~sgi~v~~~GH-~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~ 111 (447)
T COG0160 39 PLVIVR--AEGAYLYDVDGN----EYLDFLSGIAVLNLGH-NHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTAL 111 (447)
T ss_pred cceEEe--cccCEEEeCCCC----EEEEcccCcchhccCC-CCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHh
Confidence 566776 788999999999 9999999999999999 999999999999999998765444559999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|...++++||+||||||||+|||+| |.| ||| ..||+|.++|||+|.+++++|+....++
T Consensus 112 ~p~~~~~~~~f~~sGaeA~E~AiKiA-r~~-------Tgr-----------~~viaf~~afHG~T~galslT~~~~~~~- 171 (447)
T COG0160 112 APGSGLKKVFFGNSGAEAVEAAIKIA-RAY-------TGR-----------PGVIAFDGAFHGRTLGALSLTGSKPPYK- 171 (447)
T ss_pred CCcccCCeEEecCCcHHHHHHHHHHH-HHH-------hCC-----------CcEEEECCcccccchhhHHhccCccccc-
Confidence 99733789999999999999999999 677 565 7899999999999999999998553321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+++++ .+++.++|+|++|++ +|.... +++...+.+++++.+... ..
T Consensus 172 ------~~~~~~--------~~~v~~~Pyp~~yr~---------------p~~~~~--~~~~~~~~~~~e~~i~~~--~~ 218 (447)
T COG0160 172 ------AGFGPL--------PPGVYHVPYPNPYRC---------------PFGIGG--EECGDDALEYIERALFDL--EV 218 (447)
T ss_pred ------cCCCCC--------CCCeEEecCCccccC---------------cccCch--hhhhHHHHHHHHHHHHhh--cC
Confidence 222222 245788999988752 222111 234444566777766542 45
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||||+||| ||+||+++||++||++|+++|+|||++||+|||||||||||+||++||+|+.|||+|+||+|+||
T Consensus 219 ~~~~vAaiI~EpI-QgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G- 296 (447)
T COG0160 219 GPEEVAAIIIEPI-QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG- 296 (447)
T ss_pred CCCceeEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC-
Confidence 6789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|+|++++++++.... .|++||+|||++||||+|+|++++++++.+++.+.++++++ +|.++.+++|
T Consensus 297 ~Pl~avv~r~ei~~~~~g-------~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~----~L~~l~~~~~ 365 (447)
T COG0160 297 LPLSAVVGRAEIMDWPPG-------GHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRD----RLEELQEKHP 365 (447)
T ss_pred CceeEEeccHHhcccCCc-------ccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH----HHHHHHhhcC
Confidence 899999999999994432 48999999999999999999999888887877777777776 5577889999
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.|++|||+|+|++||++++.....+....+..+...|+++||++..+| |++||.||+++|+|++|+.+++|+++|.+
T Consensus 366 ~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 366 LIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred ceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998754444666788999999999999998765 99999999999999999999999999976
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 446 ~ 446 (447)
T COG0160 446 A 446 (447)
T ss_pred h
Confidence 4
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-76 Score=683.29 Aligned_cols=441 Identities=20% Similarity=0.238 Sum_probs=359.9
Q ss_pred cChhhhhcccccccCCCCCCCCC--CCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH
Q 002941 351 CDMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (863)
Q Consensus 351 ~~~~~~~~~~l~~p~~~~~~~~~--~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q 428 (863)
+.+.+++.+++|||++++..+.+ ..|++|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~sg~~~~~lGh-~~p~v~~Av~~q 78 (461)
T PRK07482 6 DELLAWDRDHFFHPSTHLGDHARGELPGRIVEG--GEGIRITDAQGR----RYIDAFAGLYCVNVGY-GRTEVAEAIAEQ 78 (461)
T ss_pred HHHHHhhhhhccCCcccccccccccCCCeeEEe--eeeeEEEECCCC----EEEEcccchhhhcCCC-CCHHHHHHHHHH
Confidence 34455667789999987754432 24678876 788999999999 9999999999999999 899999999999
Q ss_pred HHhcccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 429 AARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 429 ~~~~~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
++++.+... ..+.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++| +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~-~~r-----------~ 144 (461)
T PRK07482 79 AKELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLV-WYYNNVLGR-PEK-----------K 144 (461)
T ss_pred HHhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC-CCC-----------c
Confidence 999876542 3578999999999999999865 689999999999999999999 678766554 343 8
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
+||+|+++|||+|.+++++++.+.|+.. +++ +. .++.++++|++++... .
T Consensus 145 ~Ii~~~~~YHG~t~ga~s~~~~~~~~~~--------~~~----~~----~~~~~~~~p~~~~~~~--------------~ 194 (461)
T PRK07482 145 KIISRWRGYHGSGVVTGSLTGLSLFHQH--------FDL----PI----ARVLHTEAPHYYRRAD--------------A 194 (461)
T ss_pred eEEEecCccCCccHhhhhccCCchhhhc--------cCC----CC----CCCEEcCCCccccccc--------------c
Confidence 9999999999999999999986655432 111 11 2345666665442100 0
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
+. ..+.+...+.+.+++.+++ .++++|||||+||| ||++|+++||++||++|+++|++||+|||+|||+||||
T Consensus 195 ~~--~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPv-qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfG 267 (461)
T PRK07482 195 GM--SEEQFSAYCADELEELILA----EGPDTIAAFIAEPV-LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFG 267 (461)
T ss_pred CC--CHHHHHHHHHHHHHHHHHh----cCCCcEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 00 0012333456677777742 34678999999998 99999999999999999999999999999999999999
Q ss_pred ccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
|||++|+++++|++|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||+|||++||||+|+|++++++
T Consensus 268 RtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~ 347 (461)
T PRK07482 268 RLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERE 347 (461)
T ss_pred cCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999889999999999999886321 1224579999999999999999999999998
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCch--HHHHHHHHHHHHCCcEEEec-
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYGS--LYAASLLKKLREDGVYMRPL- 822 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~~--~~~~~l~~~l~e~GV~~~p~- 822 (863)
++.+++.+.++++.+.| .++.+++|.|.+|||.|+|++++|.++.. +.++.. ..+..++..|+++||++++.
T Consensus 348 ~l~~~~~~~g~~l~~~L----~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~ 423 (461)
T PRK07482 348 NLVGNAAEVGAYFRARL----RAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP 423 (461)
T ss_pred CHHHHHHHHHHHHHHHH----HHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC
Confidence 88888888888777644 56678899999999999999999986431 222222 24578899999999999754
Q ss_pred -CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 823 -GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 823 -g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
++++++.||+++|++|||+++++|+++++++
T Consensus 424 ~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 424 HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999876
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-76 Score=679.44 Aligned_cols=438 Identities=24% Similarity=0.339 Sum_probs=361.6
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+.+++++||||+++..+....|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~ 76 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVR--GDGVYVYDIDGK----KLLDGVGGLWNVNVGH-NREEVKEAIVRQLDELEY 76 (449)
T ss_pred ccccccccCCcccccccccCCCceEEe--ccccEEEeCCCC----EEEECchhHHhhcCCC-CCHHHHHHHHHHHHhccc
Confidence 356788999999997765446778877 889999999999 9999999999999999 899999999999999887
Q ss_pred ccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 435 ~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
.+. .++.+++..+|||+|++++|.+.+++|+|++|||||||+|||+| |.|++.+|+ +|| ++||+|+
T Consensus 77 ~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~~~~~g~-~~r-----------~~ii~~~ 143 (449)
T PRK07481 77 YSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQYWKVRGQ-PER-----------TKFISLK 143 (449)
T ss_pred eecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEEC
Confidence 643 35689999999999999985333789999999999999999999 678766665 343 8899999
Q ss_pred CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCc
Q 002941 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 593 (863)
++|||+|.+++++++...++..+ .+. .+++.+++.|+.++ ++|+. +|.
T Consensus 144 ~~yHG~t~ga~s~~~~~~~~~~~--------~~~--------~~g~~~~~~~~~~~---------------~~~~~-~d~ 191 (449)
T PRK07481 144 QGYHGTHFGGASVNGNTVFRRNY--------EPL--------LPGCFHVETPWLYR---------------NPFTE-QDP 191 (449)
T ss_pred CCcCCcchhhhccCCCccccccc--------CCC--------CCCCEEeCCCcccc---------------cccCC-CCH
Confidence 99999999999998866554211 111 13455566665431 11210 122
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc
Q 002941 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (863)
Q Consensus 594 ~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~ 673 (863)
+.+...+.+.+|+.+.. .++++|||||+||| ||++|+++||++||++|+++|++||+|||+|||+|||||||++|
T Consensus 192 ~~~~~~~~~~le~~i~~----~~~~~iAAviiEPv-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (449)
T PRK07481 192 EELARICARLLEREIAF----QGPDTIAAFIAEPV-QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF 266 (449)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh
Confidence 33444555666766642 35678999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 674 a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
+++++|++|||+|+||+|+|||+|+|++++++++++.+..... ...+.|++||+|||++|||++++|++++++++.+++
T Consensus 267 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~ 346 (449)
T PRK07481 267 GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANA 346 (449)
T ss_pred HhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999998999999999999999864321 123579999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYG--SLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
.+.++++++.| .++.+++|.|.+|||.|+|++++|..+.. +.+.. ......+...|+++||++.+.|+.++++
T Consensus 347 ~~~g~~l~~~L----~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~i~l~ 422 (449)
T PRK07481 347 AKRGAYLLEGL----QPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKIILS 422 (449)
T ss_pred HHHHHHHHHHH----HHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCEEEEE
Confidence 88888887754 45566789999999999999999975431 22211 2356778899999999999988889999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
||+++|++|||+++++|+++++++
T Consensus 423 Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 423 PPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999764
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-76 Score=676.97 Aligned_cols=439 Identities=29% Similarity=0.449 Sum_probs=356.9
Q ss_pred hhhhhcccccccCCCCCCCCC-CCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 353 MPKRAGELFWWPFTQHKLVPE-EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~-~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
+.+.+.+++|+|++++..... .++..|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~ 95 (472)
T PRK08742 23 WRQRDLAVLWHPCTQMREHPHTLPLVPIAR--GEGAWLVGHDGR----RYLDAVSSWWTNLFGH-AEPRIGAAIAAQAGE 95 (472)
T ss_pred HHHhhhcccccCCcccccccccCCCeeEEe--cccCEEEeCCCC----EEEEcCccHHhccCCC-CCHHHHHHHHHHHHh
Confidence 445566789999988643321 13456665 899999999999 9999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCC----CCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGK----GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~----~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
+.+.....+.+++..+|+++|++.+|. +++++|+|+||||||||+|||+| |.|+..+|+ ++| +
T Consensus 96 l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlA-r~~~~~~g~-~~r-----------~ 162 (472)
T PRK08742 96 LEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA-FHYFHNRGE-HRR-----------T 162 (472)
T ss_pred CCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHH-HHHHHhcCC-CCC-----------c
Confidence 887765567899999999999999874 23679999999999999999999 677766665 343 8
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
+||+|+++|||+|.+++++++.+.++.. +.++. +++.++++|+.++.. +
T Consensus 163 ~ii~~~~syHG~t~gals~~~~~~~~~~--------~~p~~--------~~~~~~~~p~~~~~~---------------~ 211 (472)
T PRK08742 163 RFIALENGYHGETIGALAVGDIPLYRRV--------YAPLL--------LESLFAPSPDAYLAE---------------P 211 (472)
T ss_pred EEEEECCCcCCCchhhhhccCCcccccc--------cCCCC--------CCCEEeCCCCccccc---------------c
Confidence 9999999999999999999886655431 11111 234556777554211 1
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
+. ........+.+.+++.++. ++++|||||+||++||+||+++||++||++|+++|++||++||+|||+||||
T Consensus 212 ~~--~~~~~~~~~~~~l~~~~~~-----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 212 GQ--SAEDYALQAADALQALFEQ-----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred CC--CHHHHHHHHHHHHHHHHHh-----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 10 0112233345667777652 4678999999994499999999999999999999999999999999999999
Q ss_pred ccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh
Q 002941 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
|||++|+++++|+.|||+|+||+|||||+|+|++++++++++.+........+.|++||+|||++|||++|+|+++++++
T Consensus 285 RtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~ 364 (472)
T PRK08742 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDD 364 (472)
T ss_pred CCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999988999999999999988642222346799999999999999999999999988
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCc--hHHHHHHHHHHHHCCcEEEecCC
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYG--SLYAASLLKKLREDGVYMRPLGN 824 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~--~~~~~~l~~~l~e~GV~~~p~g~ 824 (863)
+.+++.+.++++++. .+.++++|.|++|||.|+|++|+|..+.. +.++. ...+..+.+.|+++||++++.|+
T Consensus 365 l~~~~~~~g~~l~~~-----~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~ 439 (472)
T PRK08742 365 VIARNQPTAARMTQL-----AAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGD 439 (472)
T ss_pred HHHHHHHHHHHHHHH-----HHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecCC
Confidence 888888888877643 33456789999999999999999986431 22222 23456788999999999999999
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 825 VIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 825 ~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+++|.||+++|++|||+++++|+++|+++.
T Consensus 440 vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 440 VLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999997653
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-77 Score=634.25 Aligned_cols=397 Identities=24% Similarity=0.287 Sum_probs=340.1
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|++|++ |+|.||||.+|+ +|||+.+|+|++++|| |||+|++|+.+|+.++.|.+ ..+.|++..+|||+|++
T Consensus 32 ~Pl~Iv~--~~~~ylyDe~G~----ryLD~f~Gi~tvslGH-chP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~s 103 (442)
T KOG1404|consen 32 KPLVIVR--GEGQYLYDEEGR----RYLDAFGGIVTVSLGH-CHPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALVS 103 (442)
T ss_pred CCceEEe--cceEEEEcCCCc----eeehhhCCeEEEEcCC-CChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHHH
Confidence 4678877 788999999999 9999999999999999 99999999999998888765 57899999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.+|.+ +.++||+||||||||.||||| |.| +|+ .+||+++++|||.|..++++|+.+.++.
T Consensus 104 ~~P~~-l~~vfF~nsGsEANelal~ma-r~Y-------t~~-----------~diIa~r~~YHG~t~~t~glt~~~~~k~ 163 (442)
T KOG1404|consen 104 KLPGD-LKVVFFVNSGSEANELALKMA-RLY-------TGN-----------LDIIARRNSYHGNTLYTLGLTGLSPWKQ 163 (442)
T ss_pred hCCCC-ceEEEEecCCchHHHHHHHHH-HHh-------cCC-----------ceEEEeeccccCCchhhcccccCCcccc
Confidence 99976 889999999999999999999 677 353 7999999999999999999999777663
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++ |.+ ..++.|...|+.|+. +|+..+ .++..+.+. +.+++++..
T Consensus 164 ~~--------------~~~--~~~~~~~~~Pdp~r~---------------~~~~~~-~~e~~d~~a----~~l~d~i~~ 207 (442)
T KOG1404|consen 164 NF--------------PGV--ASGVHHTMNPDPYRG---------------IFGGSN-EEEASDRYA----KELEDLILY 207 (442)
T ss_pred cC--------------CCC--CCcccccCCCCcccc---------------cCCCCc-hhhhHHHHH----HHHHHHHHh
Confidence 21 111 136677888877643 232222 122333334 444454556
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++.|||||+||| ||.||++.+|++||++++++|+++|.++|+|||||||||||.+|+||+.|+.|||+|++|+||+|
T Consensus 208 ~~~~~vAafiaEtI-qGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG 286 (442)
T KOG1404|consen 208 DGPETVAAFIAETI-QGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNG 286 (442)
T ss_pred cCCCceeEEEeehh-ccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCC
Confidence 77889999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|||||+++++|++.+.... .|.+||+|||++||+++|+|+++++++++++..+.+.+|.+ ++.++.++|
T Consensus 287 -~Pl~AVvtt~EIa~v~~~~~-----~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~----~l~~l~d~h 356 (442)
T KOG1404|consen 287 -FPLGAVVTTPEIADVLNQKS-----SHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLE----KLAALKDKH 356 (442)
T ss_pred -CcceeeecCHHHHHHHHhcc-----ccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHhhcC
Confidence 89999999999999998643 38899999999999999999999988777777776666665 557778899
Q ss_pred CCeeEecccceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
|+|++|||+|+|+++|++++. ...+++......+...|.++|+++.-. |+++|+.||+++|+||||.+++..
T Consensus 357 ~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 357 PIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred CceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 999999999999999999876 234445566788999999999999753 599999999999999998888866
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-76 Score=677.71 Aligned_cols=438 Identities=19% Similarity=0.237 Sum_probs=355.9
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.++.|+|++++.......+++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~ 78 (459)
T PRK05965 6 LIELDRAHLIHPVASYRGHEARGVTVLAS--AKGATLTDASGH----QLLDAFAGLWCVNVGY-GQESIVEAAAEQMREL 78 (459)
T ss_pred HHHhhhhccccccccccccccCCCceEEe--eeEeEEEECCCC----EEEECcccHHhccCCC-CCHHHHHHHHHHHHhc
Confidence 44556678899987653221123567776 788999999999 9999999999999999 8999999999999998
Q ss_pred ccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+... ..+.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|+ ++| ++||+
T Consensus 79 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~-~~r-----------~kii~ 144 (459)
T PRK05965 79 PYATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFI-RHYWNATGR-PSK-----------KQFIS 144 (459)
T ss_pred CCcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHH-HHHHHhcCC-CCc-----------cEEEE
Confidence 77653 2467999999999999999855 789999999999999999999 678766664 243 88999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|.+++++++.+.++.. +++.. +++.+++.|++|+. ++. +
T Consensus 145 ~~~~YHG~t~~a~s~t~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~---------------~~~--~ 191 (459)
T PRK05965 145 LERGYHGSSSVGAGLTALPAFHRG--------FDLPL--------PWQHKIPSPYPYRN---------------PVG--D 191 (459)
T ss_pred ecCCcCcccHHHHHhcCCchhhcc--------cCCCC--------CCCEEcCCCccccc---------------ccC--C
Confidence 999999999999999886554431 11111 12334555544321 111 1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
|.+++...+.+.+++.|+. .++++|||||+||| ||+||+++||++||++|+++|++||++||+|||+|||||||+
T Consensus 192 ~~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPi-qg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~ 266 (459)
T PRK05965 192 DPQAIIAASVAALRAKVAE----LGADNVAAFFCEPI-QGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP 266 (459)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEecc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch
Confidence 2123334456677777753 34578999999997 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+..... ...+.|++||+|||++|||++|+|++++++++.+
T Consensus 267 ~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~ 346 (459)
T PRK05965 267 LFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLA 346 (459)
T ss_pred hhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999998899999999999998864211 1235799999999999999999999999988889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecC-CEE
Q 002941 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLG-NVI 826 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g-~~l 826 (863)
++.+.++++.+.| .++ .++|.|++|||.|+|+++++..+. .+.++. ...+..+.+.|+++||++++.| +.+
T Consensus 347 ~~~~~g~~l~~~l----~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i 421 (459)
T PRK05965 347 NGQKAGPRFAAGL----DAL-RAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVL 421 (459)
T ss_pred HHHHHHHHHHHHH----Hhh-ccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEE
Confidence 9888888888755 333 468999999999999999997543 122211 2356788999999999999877 789
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
++.||+++|++|||+++++|+++++++.
T Consensus 422 ~~~PpL~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 422 GFAPALCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998864
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-75 Score=669.50 Aligned_cols=434 Identities=25% Similarity=0.397 Sum_probs=356.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++..++|+|+++........|++|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~ 86 (453)
T PRK06943 14 WVARSLRAVWHPCTQMKHHERLPLLPVAR--GEGAWLYDRDGR----RYLDAISSWWVNLFGH-ANPRINAALKDQLDTL 86 (453)
T ss_pred HHHHhhcccccCCcCccccccCCCceEEe--cccCEEEeCCCC----EEEEcchHHHHhcCCC-CCHHHHHHHHHHHHhc
Confidence 34556678999998764333234677776 889999999999 9999999999999999 8999999999999999
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.....+.+++..+|||+|++.+|.. +++|+|+||||||||+|||+| |+|+..+|. +|| ++||+|
T Consensus 87 ~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~rg~-~~r-----------~~Ii~~ 152 (453)
T PRK06943 87 EHAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNRGR-GDK-----------REFVCL 152 (453)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHhCC-CCC-----------CEEEEE
Confidence 887655678999999999999998854 579999999999999999999 567665665 343 789999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||+|++++++++...|+..+ .+.+ .++.++++|+.++. .+...
T Consensus 153 ~~~yHG~t~gals~~~~~~~~~~~--------~~~~--------~~~~~~~~p~~~~~---------------~~~~~-- 199 (453)
T PRK06943 153 ANGYHGETIGALGVTDVALFKDAY--------DPLI--------RHAHVVASPDARGA---------------RPGET-- 199 (453)
T ss_pred CCCcCCCcHHhhcccCChhhhccc--------ccCC--------CCCEEECCCCcccc---------------ccCCC--
Confidence 999999999999999876655321 1111 12345666643310 11110
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.......+.+.+++.|++ ++++|||||+||++||++|+++||++||++|+++|++||++||+|||+|||||||++
T Consensus 200 ~~~~~~~~~~~l~~~l~~-----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~ 274 (453)
T PRK06943 200 AADVAARALADVRRLFAE-----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTF 274 (453)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcch
Confidence 012223345667777753 467999999999449999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|++|||+|+||+|+|||+|+|++++++++++.+........+.|++||+|||++||+++|+|++++++++.+++
T Consensus 275 fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~ 354 (453)
T PRK06943 275 FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARN 354 (453)
T ss_pred hHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999998899999999999998864221223569999999999999999999999998888998
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
.+.++++.+.| .++ .+++.|.+|||.|+|+++++..+. ......+..+...|+++||++.+.|+.++|.||+
T Consensus 355 ~~~G~~l~~~L----~~l-~~~~~v~~vrG~Gl~~gvel~~~~---~~~~~~~~~i~~~~~~~Gll~~~~g~~l~~~Ppl 426 (453)
T PRK06943 355 ARKSARLRAAL----APL-AAHPQVRHLRQRGTIFAFDVALDG---DAARTFSRRFFEAALERELLLRPIGTTVYLMPPY 426 (453)
T ss_pred HHHHHHHHHHH----HHH-hcCCCEEeEeccccEEEEEEccCC---CcchHHHHHHHHHHHHCCcEEEecCCEEEEeCCC
Confidence 88888888755 333 457889999999999999998432 1112346788999999999999988999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
++|++|||+++++|+++|+++
T Consensus 427 ~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 427 VLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=670.28 Aligned_cols=441 Identities=21% Similarity=0.264 Sum_probs=358.7
Q ss_pred cccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC-C
Q 002941 360 LFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-P 438 (863)
Q Consensus 360 ~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~-~ 438 (863)
.+||||+++.......|.+|++ |+|+|+||+||+ +|||+++|+|++++|| +||+|++|+++|++++.+... .
T Consensus 56 ~~~~p~~~~~~~~~~~p~~i~~--~~G~~l~D~dG~----~ylD~~sg~~~~~lGh-~hp~v~~Av~~ql~~~~~~~~~~ 128 (504)
T PLN02760 56 DMLAPFTAGWQSTDLEPLVIEK--SEGSYVYDINGK----KYLDALAGLWCTALGG-SEPRLVAAATEQLNKLPFYHSFW 128 (504)
T ss_pred CcccCcccccccccCCCceEEe--eeeeEEEECCCC----EEEEcCcCHHhcccCC-CCHHHHHHHHHHHhhccceeccc
Confidence 4799999986554445677776 788999999999 9999999999999999 899999999999999876542 2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.+++..+|||+|++.++...+++|+|+||||||||+|||+| |+|++.+|. ++ |++||+|+++|||
T Consensus 129 ~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~~g~-~~-----------r~~iI~~~~~yHG 195 (504)
T PLN02760 129 NRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNALGR-PN-----------KKKFIARSKSYHG 195 (504)
T ss_pred ccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHhcCC-CC-----------CcEEEEECCCccC
Confidence 4679999999999999864333679999999999999999999 677665554 23 3899999999999
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
+|++++++++.+.++..+ +++. +++.++++|.+|+.. +++ .+.+++..
T Consensus 196 ~t~~a~slsg~~~~~~~~------------~~~~----~~~~~~~~p~~~~~~------~~~----------~~~~~~~~ 243 (504)
T PLN02760 196 STLISASLSGLPALHQKF------------DLPA----PFVLHTDCPHYWRFH------LPG----------ETEEEFST 243 (504)
T ss_pred ChHhhhhccCChhhccCC------------CCCC----CCcEEeCCCcccccC------CCC----------CcHHHHHH
Confidence 999999998865543211 1111 234566666544210 000 11112223
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++++.+.. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||++|+++++
T Consensus 244 ~~~~~le~~l~~----~~~~~iAAvI~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~ 318 (504)
T PLN02760 244 RLADNLENLILK----EGPETIAAFIAEPV-MGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKY 318 (504)
T ss_pred HHHHHHHHHHHh----cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhc
Confidence 344566666542 35678999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 679 gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
|++|||+||||+|||||+|+|++++++++++.+.... ....+.|++||++||++|||++|+|++++++++.++++++++
T Consensus 319 gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~ 398 (504)
T PLN02760 319 NIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAP 398 (504)
T ss_pred CCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999986421 122457999999999999999999999998889999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCC--chHHHHHHHHHHHHCCcEEEecCCEEEEecCCCC
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGY--GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~--~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~ 834 (863)
++++.|. ++ .++|.|.+|||.|+|+++++.++.. .+.+ ....+..+.+.|+++||++.+.++.++++||+++
T Consensus 399 ~l~~~L~----~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~lrl~Ppl~i 473 (504)
T PLN02760 399 RFQDGIK----AF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLII 473 (504)
T ss_pred HHHHHHH----HH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecCCEEEEECCCCC
Confidence 8887663 33 6789999999999999999976531 1222 1234677899999999999998899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002941 835 SPEVCSQLLLKLYQRLEEFDKVEEKLKS 862 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~~~~~~~~~ 862 (863)
|++|||+++++|+++++++.+-..+||+
T Consensus 474 t~eeid~~~~~l~~al~~~~~~~~~~~~ 501 (504)
T PLN02760 474 TPEEVDELISIYGKALKATEERVAELKS 501 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998765555553
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-74 Score=664.00 Aligned_cols=436 Identities=28% Similarity=0.432 Sum_probs=357.4
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+++.++.|+|++....+.+.++.+|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l~ 80 (466)
T PRK07030 8 MQRDLKVLWHPCTQMKDHEQLPLIPIRR--GEGVWLEDFEGK----RYLDAVSSWWVNVFGH-ANPRINQRIKDQVDQLE 80 (466)
T ss_pred HhhhhcccccccccccccccCCCceEEe--eeccEEEECCCC----EEEEcchhHHhhcCCC-CCHHHHHHHHHHHHhcC
Confidence 4456778899988654332233456776 788999999999 9999999999999999 89999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
+.....+.+++..+|+|+|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++| ++||+|+
T Consensus 81 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlA-r~~~~~~g~-t~r-----------~~ii~~~ 146 (466)
T PRK07030 81 HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMS-FHYWRNRGK-PRK-----------KRFVTLT 146 (466)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHHhCC-CCC-----------cEEEEEC
Confidence 77655678999999999999998854 689999999999999999999 677666665 343 7899999
Q ss_pred CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCc
Q 002941 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 593 (863)
++|||+|.+++++++...++..+ .+.. .++.++|+|++++.. ++. ..
T Consensus 147 ~~yHG~t~ga~s~~~~~~~~~~~--------~p~~--------~~~~~~p~~~~~~~~---------------~~~--~~ 193 (466)
T PRK07030 147 NSYHGETLAAMSVGDVALFTETY--------KPLL--------LDTIKVPSPDCYLRP---------------EGM--SW 193 (466)
T ss_pred CCcCcccHHHHhccCCccccccC--------CccC--------CCCEEcCCCCccccc---------------cCC--CH
Confidence 99999999999998866554321 1111 234566777654210 110 11
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc
Q 002941 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (863)
Q Consensus 594 ~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~ 673 (863)
......+.+.+++.+++ ++++|||||+||++||.||+++||++||++|+++|++||+|||+|||+|||||||++|
T Consensus 194 ~~~~~~~l~~le~~~~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~ 268 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAE-----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF 268 (466)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch
Confidence 12233445667777753 4689999999993399999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 674 a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
+++++|++|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||+|||++|||++|+|++++++++.+++
T Consensus 269 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~ 348 (466)
T PRK07030 269 ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENN 348 (466)
T ss_pred HHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999889999999999999885321 1124679999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++.++++++.| .++ .++|.|.+|||.|+|++|++..+. .+.++. ...+..+.+.|+++||++.+.++.++|.
T Consensus 349 ~~~G~~l~~~L----~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~ 423 (466)
T PRK07030 349 RALARRMAEAT----AHL-ADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLGSVVYFL 423 (466)
T ss_pred HHHHHHHHHHH----HHH-hcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecCCEEEEE
Confidence 88888888755 333 468999999999999999997643 122221 1234678899999999999988999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
||+++|++|||+++++|+++++++
T Consensus 424 Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 424 PPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-74 Score=662.94 Aligned_cols=434 Identities=22% Similarity=0.280 Sum_probs=353.3
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+++.+++|+|++... + ..|+++++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~--~-~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~ 78 (451)
T PRK07678 9 ELLAKDEQYVWHGMKPYN--P-NATMVVAK--AEGAWVTDIQGN----RYLDGMSGLWCVNVGY-GRKELAEAAYEQLKT 78 (451)
T ss_pred HHHHHhhcccCCCccccc--c-CCCeeEEe--eeeeEEEeCCCC----EEEEccccHHhhcCCC-CCHHHHHHHHHHHHh
Confidence 344556677888875321 1 23667776 888999999999 9999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+... .+.+++..+|+|+|++++|. .++|+|+||||||||+|||+| |.|++.+|+ +|| ++||+
T Consensus 79 ~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklA-r~~t~~~g~-~~r-----------~~ii~ 142 (451)
T PRK07678 79 LSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIA-RQYHAQKGE-PHR-----------YKFIS 142 (451)
T ss_pred cCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEE
Confidence 877652 46789999999999999875 369999999999999999999 678766664 243 88999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|.+++++++...++.. +.+. .+++.+++.|+.++. ++....
T Consensus 143 ~~~~yHG~t~~als~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~---------------~~~~~~ 191 (451)
T PRK07678 143 RYRAYHGNSMGALAATGQAQRKYK--------YEPL--------APGFLHVPPPDCYRM---------------PGIESE 191 (451)
T ss_pred ECCCcCCccHHHhhcCCCcccccc--------cCCC--------CCCCEEeCCCccccc---------------cccCCh
Confidence 999999999999999886554321 1111 134566777765421 111000
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+.....+.+.+++.|+. .++++|||||+||| ||.+|+++||++||++|+++|++||+|||+|||+|||||||+
T Consensus 192 --~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPi-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 192 --DIYDLECVKEIDRVMTW----ELSETIAAVIMEPI-ITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264 (451)
T ss_pred --HHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch
Confidence 11223345567777752 34678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+........+.|++||++||++|||++|+|++++++++.++
T Consensus 265 ~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~ 344 (451)
T PRK07678 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIER 344 (451)
T ss_pred hHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999899999999999999986432223467999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCchHHHHHHHHHHHHCCcEEEec-------C
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYGSLYAASLLKKLREDGVYMRPL-------G 823 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~~~~~~~l~~~l~e~GV~~~p~-------g 823 (863)
+.+.++++++.| .+.+++++.|.+|||.|+|+++++..+.. ..+.....+..++..|+++||++.+. +
T Consensus 345 ~~~~g~~l~~~l----~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~ 420 (451)
T PRK07678 345 SAQLGELLLEQL----KEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYN 420 (451)
T ss_pred HHHHHHHHHHHH----HHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCC
Confidence 888888887755 45567889999999999999999975431 12223345778999999999999764 2
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+||+||+++|++|||+++++|+++++++
T Consensus 421 ~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 421 NVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999765
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-74 Score=662.10 Aligned_cols=439 Identities=21% Similarity=0.249 Sum_probs=359.0
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+.+++++|+||+++..+....|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~ 82 (466)
T PRK07036 10 ALAQADKRHLLHPWHDFSSLGKEGSLVIVE--AEGIYVTDADGR----RYLDGIGGMWCVNVGY-GREEMADAIADQARR 82 (466)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEe--CceeEEEECCCC----EEEECcccHHhhcCCC-CCHHHHHHHHHHHHh
Confidence 344566778999998875444345678877 788999999999 9999999999999999 899999999999999
Q ss_pred cccccCCC-CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEE
Q 002941 432 FGHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (863)
Q Consensus 432 ~~~~~~~~-~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II 510 (863)
+.+.+... +.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++| ++||
T Consensus 83 ~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~-t~r-----------~~Ii 148 (466)
T PRK07036 83 LPYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFV-HYYFNVRGR-PAK-----------KHII 148 (466)
T ss_pred CcccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHhcCC-CCc-----------cEEE
Confidence 87765433 68999999999999999865 689999999999999999999 678766664 343 8999
Q ss_pred EecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 511 ~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
+|+++|||+|.+++++++.+.++..+ . +. .+++.+++.|++++. +.+.
T Consensus 149 ~~~~~YHG~t~~a~s~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~---------------~~~~- 196 (466)
T PRK07036 149 TRGDAYHGSTYLTASLTGKAADRTEF--------D----YA----SDLVHHLSSPNPYRR---------------PAGM- 196 (466)
T ss_pred EEcCccCCccHhhhcccCCCcccccc--------c----CC----CCCcEEecCCccccc---------------ccCC-
Confidence 99999999999999999866554211 1 11 023456666754421 0100
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
......+.+.+.+++.+. ..++++|||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||
T Consensus 197 -~~~~~~~~~~~~~~~~i~----~~~~~~iAavi~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG 270 (466)
T PRK07036 197 -SEAAFCDFLVDEFEDKIL----SLGADNIAAFIAEPI-LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG 270 (466)
T ss_pred -ChHHHHHHHHHHHHHHHH----HcCCCceEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc
Confidence 001223334455665554 245689999999998 99999999999999999999999999999999999999999
Q ss_pred Ccchhh-hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 671 VETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 671 ~~~a~e-~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
++|+++ ++|+.|||+|+||+|+|||+|+|++++++++++.+... .....+.|++||++||++||+++++|++++++++
T Consensus 271 ~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l 350 (466)
T PRK07036 271 HFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGL 350 (466)
T ss_pred hhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 999998 79999999999999999988999999999999988642 1112357899999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC-CCC--chHHHHHHHHHHHHCCcEEEecCCE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGY--GSLYAASLLKKLREDGVYMRPLGNV 825 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~-~~~--~~~~~~~l~~~l~e~GV~~~p~g~~ 825 (863)
.+++.++++++++.|. + ++++|.|.+|||.|+|++++|.++... +.+ ....+..+...|+++||++.+.++.
T Consensus 351 ~~~~~~~g~~l~~~L~----~-l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~ 425 (466)
T PRK07036 351 CEHVREVGPYFEERLA----S-LRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHL 425 (466)
T ss_pred HHHHHHHHHHHHHHHH----H-hccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecCCE
Confidence 9999988888887653 2 357899999999999999999765321 121 1235678899999999999998899
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+++.||+++|++|||+++++|+++++++.
T Consensus 426 ~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 426 CVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998874
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-73 Score=658.45 Aligned_cols=437 Identities=20% Similarity=0.269 Sum_probs=354.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+.+.+++|+|++++..+....+.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~ 82 (456)
T PRK07480 10 LQALDAAHHLHPFSDMKALNEKGSRVITR--AEGVYLWDSEGN----KILDGMAGLWCVNVGY-GRKELADAAARQMREL 82 (456)
T ss_pred HHhhhhcccccCcccccccccCCCceEEe--ceeeEEEeCCCC----EEEEccchHHHhcCCC-CCHHHHHHHHHHHHhc
Confidence 34445678899988764433234567776 888999999999 9999999999999999 8999999999999998
Q ss_pred ccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+... ..+.+++..+|||+|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|+ ++| ++||+
T Consensus 83 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~-~~r-----------~~ii~ 148 (456)
T PRK07480 83 PYYNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMV-RHYWALKGK-PQK-----------KVIIS 148 (456)
T ss_pred CCcccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEE
Confidence 76542 2568999999999999999865 689999999999999999999 678766665 343 79999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|++++++++...++.. +++. .+++.++++|++|+. .++ .
T Consensus 149 ~~~~yHG~tl~a~s~~g~~~~~~~--------~~~~--------~~~~~~~~~p~~~~~---------------~~~--~ 195 (456)
T PRK07480 149 RKNGYHGSTVAGASLGGMKYMHEQ--------GDLP--------IPGIVHIDQPYWFGE---------------GGD--M 195 (456)
T ss_pred ECCCcCCcchhhhhccCChhhhcc--------cCCC--------CCCCeecCCCccccc---------------ccC--C
Confidence 999999999999999875543321 1111 123455666655421 111 0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+..++.+.+.+.+++.+.+ .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||+
T Consensus 196 ~~~~~~~~~~~~l~~~~~~----~~~~~vAAvi~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 270 (456)
T PRK07480 196 TPEEFGLAAARQLEAKILE----LGADNVAAFIGEPI-QGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE 270 (456)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc
Confidence 1123334445666655532 35678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|++|||+||||+|+|||+|+|++++++++++.+.... ..+.|++||+|||++|||++|+|++++++++.++
T Consensus 271 ~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 348 (456)
T PRK07480 271 WFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEG--GEFNHGFTYSGHPVAAAVALANLRILRDEGIVER 348 (456)
T ss_pred hhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCC--CCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999889999999999999884211 2356999999999999999999999998888888
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCch--HHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 752 I-IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGS--LYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 752 l-~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~--~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
+ .++++++++.|+ + +.++|.|.+|||.|+|++++|.++. .+.++.. .....+...|+++||++.+.++.++
T Consensus 349 ~~~~~g~~l~~~l~----~-l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~ 423 (456)
T PRK07480 349 VRDDTGPYLQKRLR----E-LADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMI 423 (456)
T ss_pred HHHHHHHHHHHHHH----H-hhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecCCEEE
Confidence 8 588888887553 3 4568999999999999999997543 1122211 2345788899999999998889999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
|.||+++|++|||+++++|++++.++.+
T Consensus 424 ~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 424 ISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988643
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=658.16 Aligned_cols=439 Identities=27% Similarity=0.428 Sum_probs=358.1
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++|+|++++.......|++|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l 88 (460)
T PRK06916 16 LSEKNKAYVWHPFTQMKDYLEEDPLIIER--GEGRKLYDVNGN----EYYDGVSSIWLNVHGH-QVPELDEAIREQLNKI 88 (460)
T ss_pred HHHHHhhccccccccccccccCCCeeEEe--ccccEEEeCCCC----EEEEcchhHHHhhcCC-CCHHHHHHHHHHHHhC
Confidence 34556677899988653221234677776 889999999999 9999999999999999 8999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.....+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+| |.|+..+|. +|| ++||+|
T Consensus 89 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklA-r~~~~~~g~-tgr-----------~~ii~~ 154 (460)
T PRK06916 89 AHSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMA-FQYWQNKGK-PKK-----------QRFVTL 154 (460)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEE
Confidence 877655678999999999999999854 689999999999999999999 677766664 354 899999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||+|.+++++++...++..+ .++. .++.++++|+.++. +++ .+
T Consensus 155 ~~~YHG~t~~als~s~~~~~~~~~--------~~~~--------~~~~~~p~p~~~~~---------------~~~--~~ 201 (460)
T PRK06916 155 KNAYHGDTIGAVSVGAIDLFHQVY--------SSLL--------FEAIKMPYPYTYRS---------------PYG--ND 201 (460)
T ss_pred CCcCCcccHHhHhccCCccccccc--------CCCC--------CCCEEeCCCccccc---------------ccC--CC
Confidence 999999999999999866554321 1111 23455666754421 010 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.+...+.+.+.+++.|++ ++++|||||+||++||.||+++||++||++|+++|++||++||+|||+|||||||++
T Consensus 202 ~~~~~~~~~~~l~~~l~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~ 276 (460)
T PRK06916 202 KAEIVKKHLEELEELLKE-----KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKM 276 (460)
T ss_pred hHHHHHHHHHHHHHHHHh-----CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchh
Confidence 112233445667777753 568999999999339999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
|+++++|+.|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||++||++||+++++|+++++++++++
T Consensus 277 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~ 356 (460)
T PRK06916 277 FACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQ 356 (460)
T ss_pred hHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999889999999999999885321 112456899999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEE
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIYL 828 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~ 828 (863)
+.++++++++.| .++ .+++.|++|||.|+|+++++.++. .++++. ...+..+...|+++||++.+.|+.++|
T Consensus 357 ~~~~g~~l~~~l----~~l-~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~l~~ 431 (460)
T PRK06916 357 VARKTEYVATQL----EDL-FALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVF 431 (460)
T ss_pred HHHHHHHHHHHH----HHh-hcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecCCEEEE
Confidence 988888888755 344 358899999999999999998643 122221 123567899999999999999999999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
.||+++|++|||+++++|+++|+++.+
T Consensus 432 ~Ppl~it~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 432 MPPLASTIDELDEMLRILYKAISDVTE 458 (460)
T ss_pred eCCcccCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999987653
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-73 Score=655.89 Aligned_cols=440 Identities=20% Similarity=0.274 Sum_probs=358.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.++.|+|+..........|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 8 LEARDIAYHLHPYTNARRHEEEGPLVIER--GEGIYVYDDAGK----RYIEGMAGLWSVALGF-SEQRLVEAAARQMKKL 80 (460)
T ss_pred HHHhhhhhcccCCcccccccccCCceEEe--eeEEEEEECCCC----EEEEcchhHHhccCCC-CCHHHHHHHHHHHHhC
Confidence 45566788999988654332234667776 789999999999 9999999999999999 8999999999999998
Q ss_pred cccc-CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~~~-~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+.. +..+.++++.+|+|+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++| ++||+
T Consensus 81 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~g~-t~r-----------~~il~ 146 (460)
T PRK06105 81 PFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNALGR-PEK-----------KKIIS 146 (460)
T ss_pred CCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEE
Confidence 7653 23467999999999999999865 689999999999999999999 567665554 343 89999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
++++|||+|.+++++++.+.++.. +++. . +++.++++|++++.. +. ..
T Consensus 147 ~~~~yHG~t~~a~s~t~~~~~~~~--------~~~~----~----~~~~~~~~p~~~~~~----------~~------~~ 194 (460)
T PRK06105 147 RQRGYHGVTIASASLTGLPNNHRS--------FDLP----L----DRILHTGCPHYYRFG----------LP------GE 194 (460)
T ss_pred ecCccCCcchhheeccCCcccccc--------cCCC----C----CCCEEcCCCcccccc----------cC------CC
Confidence 999999999999999875544321 1111 1 245667777654210 00 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
..+...+.+.+++|+.++. .+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||+
T Consensus 195 ~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPi-qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 195 SEEAFATRLANELEALILA----EGPDTIAAFIGEPV-MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 0112333455667776642 34578999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
+|+++++|++|||+|+||+||||++|+|++++++++++.+..... ...+.|++||++||++||+++++|++++++++.+
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~ 349 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVG 349 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999998899999999999998864321 1235689999999999999999999999888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
+++++++++++.| .++ +++|.|.+|||.|+|++|++..+. .+.++. ...+..+...|+++||++.+.+++++
T Consensus 350 ~v~~~g~~l~~~L----~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~ 424 (460)
T PRK06105 350 NAAERGARLQARL----RAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLA 424 (460)
T ss_pred HHHHHHHHHHHHH----HHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 9998888888755 455 678999999999999999997543 122221 23456788999999999999889999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+.||+++|++|||+++++|+++++++.+
T Consensus 425 l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 425 FCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred EECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=649.44 Aligned_cols=435 Identities=17% Similarity=0.234 Sum_probs=353.2
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+.+..+.|+|++++.......|.+|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~ 87 (460)
T PRK12403 15 QAADAAHHIHAFLDQKALNAEGPRVMVR--GEGLHLWDNDGK----RYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLP 87 (460)
T ss_pred HHhhhcccccccccccccccCCCceEEe--ceeeEEEeCCCC----EEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCC
Confidence 3445677899998764322234677776 889999999999 9999999999999999 89999999999999988
Q ss_pred cccCC-CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 434 HVMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 434 ~~~~~-~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
+.+.. .+.++++.+|+|+|++++|.+ +++|+|+||||||||+|||+| |.|+..+|++ + |.+||.+
T Consensus 88 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~g~~-~-----------r~~ii~~ 153 (460)
T PRK12403 88 YYNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVLGKP-Q-----------KKIMIGR 153 (460)
T ss_pred CeecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhhCCC-C-----------CcEEEEE
Confidence 76432 457899999999999999854 689999999999999999999 6776555431 2 3789999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
.++|||+|++++++++...++. .++. .+++.++++|++|++. ++. .
T Consensus 154 ~~~yHG~t~~~~s~s~~~~~~~---------~~~~--------~~~~~~~~~p~~~~~~---------------~~~--~ 199 (460)
T PRK12403 154 WNGYHGSTLAATALGGMKFMHE---------MGGL--------IPDVAHIDEPYWYANG---------------GEL--T 199 (460)
T ss_pred CCCcCcccHhhhhcCCCccccc---------cCCC--------CCCCEEeCCCcccccc---------------cCC--C
Confidence 9999999999999988554431 0111 1245567777655321 000 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
...+.+.+.+.+++.+.+ .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++
T Consensus 200 ~~~~~~~~~~~le~~~~~----~~~~~iaavI~Epv-~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~ 274 (460)
T PRK12403 200 PAEFGRRAALQLEEKILE----LGAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEW 274 (460)
T ss_pred hHHHHHHHHHHHHHHHHH----hCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh
Confidence 012333444556655542 34578999999998 9999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|++|||+|+||+|||||+|+|++++++++++.+.... ..+.|++||++||++|||++|+|++++++++.+++
T Consensus 275 ~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~--~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~ 352 (460)
T PRK12403 275 FAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG--GVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRV 352 (460)
T ss_pred hhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999889999999999999986422 23568999999999999999999999988888888
Q ss_pred H-HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCEEEE
Q 002941 753 I-PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNVIYL 828 (863)
Q Consensus 753 ~-~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~lr~ 828 (863)
+ ++++++++.| .++.+++|.|++|||.|+|++++|..+. ++.++. ......+...|+++||++.+.++.+++
T Consensus 353 ~~~~g~~l~~~L----~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~l 428 (460)
T PRK12403 353 KDDTGPYLQRCL----REVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIM 428 (460)
T ss_pred HHHHHHHHHHHH----HHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecCCEEEE
Confidence 6 7888887744 4567789999999999999999997543 112211 123455778889999999988888999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+||+++|++|||+++++|+++++++.
T Consensus 429 ~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 429 APALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=649.70 Aligned_cols=424 Identities=21% Similarity=0.240 Sum_probs=348.0
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+.+..++|++|+... ...|++|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+
T Consensus 18 ~~~~~~~~~~~~~~~---~~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~ 87 (451)
T PRK06062 18 ALDRAHVFHSWSAQG---KINPMVIAG--AEGSYVWDYEGR----RYLDFSSQLVNTNIGH-QHPKVVAAIQEQAARLCT 87 (451)
T ss_pred Hhhhhhccccccccc---cCCCceEEe--ceeeEEEECCCC----EEEEcccCHHhhcCCC-CCHHHHHHHHHHHHhcCC
Confidence 345567888887642 123567776 899999999999 9999999999999999 899999999999999887
Q ss_pred ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecC
Q 002941 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (863)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~ 514 (863)
+.. .+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+| |.| ||| ++||+|++
T Consensus 88 ~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~-------tgr-----------~~ii~~~~ 146 (451)
T PRK06062 88 VAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMA-RLH-------TGR-----------PKVLSAYR 146 (451)
T ss_pred cCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHH-HHh-------hCC-----------ceEEEEeC
Confidence 654 578999999999999999865 689999999999999999999 666 454 78999999
Q ss_pred CCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 515 sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
+|||+|.+++++++.+.++.. . |. .+++.+++.|+.++ ++|...+| .
T Consensus 147 ~yHG~t~~als~~~~~~~~~~---------~-----~~---~~~~~~~~~p~~~~---------------~~~~~~~~-~ 193 (451)
T PRK06062 147 SYHGGTGSAINLTGDPRRWPN---------D-----TG---RAGVVHFFGPFLYR---------------SEFHATTE-E 193 (451)
T ss_pred CCCCCCHHHHhhcCCcccccC---------C-----CC---CCCCEEeCCCCccc---------------cccCCCCh-H
Confidence 999999999999875533210 0 11 12445556665442 11211112 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
+....+.+.+++.|+. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+
T Consensus 194 ~~~~~~~~~le~~l~~----~~~~~iAaviiEPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a 268 (451)
T PRK06062 194 EECERALAHLERVIEL----EGPSTIAAILLESV-PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA 268 (451)
T ss_pred HHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH
Confidence 2223345667777752 34578999999998 999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++|+.|||+||||+|||||+|+|++++++++++.+... .+.|++||++||++||+++|+|++++++++.+++.+
T Consensus 269 ~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~----~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~ 344 (451)
T PRK06062 269 IEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR----PYPGGLTYSGHPLACAAAVATINAMEEEGIVENAAR 344 (451)
T ss_pred HHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccC----CCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999988999999999999998632 356889999999999999999999988888888888
Q ss_pred HH-HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCc-----hHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 755 ER-RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYG-----SLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 755 ~~-~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~-----~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
.+ +++++. |.++.+++|.|.+|||.|+|++|++..+.. +.+.. ...+..+.+.|+++||++.+.++++|
T Consensus 345 ~G~~~l~~~----L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~lr 420 (451)
T PRK06062 345 IGAEVLGPG----LRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIH 420 (451)
T ss_pred HHHHHHHHH----HHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeecCCEEE
Confidence 77 466664 455667789999999999999999975431 11111 12467889999999999988889999
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
|.||+++|++|||+++++|+++++++++
T Consensus 421 l~ppl~~t~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 421 VVPPCTVTEDEVREGLAILDAALAVADA 448 (451)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999988765
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=646.13 Aligned_cols=416 Identities=21% Similarity=0.256 Sum_probs=340.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.+++..+|+++|+++
T Consensus 13 p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~ 85 (443)
T PRK07483 13 LPVAVA--GEGIYLIDATGK----RYLDASGGAAVSCLGH-SHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAA 85 (443)
T ss_pred CceEEe--ceEEEEEeCCCC----EEEEcCccHhhhccCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 566766 899999999999 9999999999999999 899999999999999876543346799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ +++|+|+||||||||+|||+| |.|++.+|+ ++| ++||+|+++|||+|.+++++++...++..
T Consensus 86 ~p~~-~~~v~f~~sGsEAve~AlklA-r~~~~~~g~-~~r-----------~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~ 151 (443)
T PRK07483 86 APAG-LEHVYFVSGGSEAVEAALKLA-RQYFVEIGQ-PQR-----------RHFIARRQSYHGNTLGALAIGGNAWRREP 151 (443)
T ss_pred CCCC-CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEECCCcCCcCHHHhhhcCCcccccc
Confidence 8855 689999999999999999999 678766664 343 88999999999999999999886544321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+++.. +++.+++.|+.|+. ... ......+...+.+.+++.+. ..
T Consensus 152 --------~~p~~--------~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~l~~~~~----~~ 195 (443)
T PRK07483 152 --------FAPLL--------IEAHHVSPCYAYRE---------------QRA-GESDEAYGQRLADELEAKIL----EL 195 (443)
T ss_pred --------cCCCC--------CCCEEeCCCccccc---------------ccc-CCCHHHHHHHHHHHHHHHHH----hc
Confidence 11111 12345555543310 000 00111223334566666554 23
Q ss_pred CCCcEEEEEEcccccc-CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 616 VSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg-~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||| || .||+++||++||++|+++|+|||++||+|||+|||||||++|+++++|++|||+|+||+|+||
T Consensus 196 ~~~~iAAvivEPi-qg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG 274 (443)
T PRK07483 196 GPDTVAAFVAETV-VGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAG 274 (443)
T ss_pred CCCceEEEEEeCc-ccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccC
Confidence 5678999999998 98 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+.... ..+.|++||+|||++||+++|+|++++++++.+++.++++++++.| .++++++
T Consensus 275 ~~Pi~av~~~~~i~~~~~~~~--~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 348 (443)
T PRK07483 275 YQPIGAVLASDRIYDAIADGS--GFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARL----RERLGQH 348 (443)
T ss_pred ccccEEEEEcHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHhcC
Confidence 889999999999999886421 2356999999999999999999999999888888888888887754 5566789
Q ss_pred CCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v 843 (863)
|.|.+|||.|+|+++++.++. +..++. ......+.+.|+++||++.+. ++.++|.||+++|++|||+++
T Consensus 349 ~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~ 428 (443)
T PRK07483 349 PHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIV 428 (443)
T ss_pred CCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999999999997643 122221 234677899999999999865 479999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDK 855 (863)
Q Consensus 844 ~~L~~~l~~l~~ 855 (863)
++|+++|.++..
T Consensus 429 ~~l~~~l~~~~~ 440 (443)
T PRK07483 429 ERLGDAIDAALA 440 (443)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-72 Score=637.69 Aligned_cols=418 Identities=29% Similarity=0.458 Sum_probs=346.5
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+.+.+++|+||++... ..++.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~ 78 (429)
T PRK06173 8 ELDRQHIWHPYSSVTD--PIPVYPVER--ADGVMITLKDGR----RLIDGMSSWWAALHGY-NHPRLNAAATNQLAKMSH 78 (429)
T ss_pred hhhhcccccccccccc--cCCCceEEe--ceeeEEEcCCCC----EEEEccchHHhccCCC-CCHHHHHHHHHHHHhcCC
Confidence 3456688999876521 223345666 889999999999 9999999999999999 899999999999999987
Q ss_pred ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecC
Q 002941 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (863)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~ 514 (863)
..+..+.+++..+|+|+|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|+ ++| ++||+|++
T Consensus 79 ~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~-~~r-----------~~ii~~~~ 144 (429)
T PRK06173 79 IMFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA-LQYQQAKGE-VQR-----------TKFATIRS 144 (429)
T ss_pred ccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHHhCC-CCC-----------cEEEEECC
Confidence 7655678999999999999999854 789999999999999999999 678766664 343 78999999
Q ss_pred CCccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCc
Q 002941 515 SYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (863)
Q Consensus 515 sYHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 593 (863)
+|||+|.+++++++.. .+++. +++.. +.+.++++|+.+ + .
T Consensus 145 ~yHG~t~~a~s~~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~------------------~---~-- 185 (429)
T PRK06173 145 GYHGDTWHAMSVCDPVTGMHGL--------FNHSL--------PVQYFLPQPSIK------------------F---G-- 185 (429)
T ss_pred CcCCcchhhhccCCCchhhhhc--------ccccC--------CCCeEeCCCCcc------------------c---c--
Confidence 9999999999998742 23321 11111 123345555321 0 0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc
Q 002941 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (863)
Q Consensus 594 ~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~ 673 (863)
..+.+.+.+.+++.++. +++++||||+||++||.||+++||++|+++|+++|++||++||+|||||||||+|++|
T Consensus 186 ~~~~~~~l~~l~~~i~~-----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~ 260 (429)
T PRK06173 186 EEWNDEAIEPLQDLLEQ-----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLF 260 (429)
T ss_pred hhHHHHHHHHHHHHHHh-----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcch
Confidence 12233345667777753 4578999999995499999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 674 a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
+++++|+.|||+||||+|+|||+|+|++++++++++.+... ..+.+.|++||++||++||+++++|++++++++.++++
T Consensus 261 a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~-~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~ 339 (429)
T PRK06173 261 ALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSG-EAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQ 339 (429)
T ss_pred HHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcC-CCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999989999999999999998642 12346799999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCC
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPC 833 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~ 833 (863)
++++++++.|+ + +.+++.|.+|||.|+|++|++.++. .+..+.+.|+++||++.+.|++++|.||++
T Consensus 340 ~~g~~l~~~L~----~-~~~~~~v~~vRg~Gl~~~iel~~~~--------~~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~ 406 (429)
T PRK06173 340 RIEAQLKQELA----P-AAEFDSVAEVRVLGAIGVVEMKEPV--------NMATLQPRFVEHGIWVRPFGKLVYIMPPFI 406 (429)
T ss_pred HHHHHHHHHHH----H-hhcCCCeeeeeccceEEEEEeCCcc--------cHHHHHHHHHHCCeEEEecCCEEEEeCCcc
Confidence 99888887553 2 2467889999999999999997542 246788999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~l 853 (863)
+|++|+|+++++|++++.++
T Consensus 407 it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 407 ISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999753
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=639.17 Aligned_cols=438 Identities=23% Similarity=0.308 Sum_probs=357.2
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+.+++++||||++.......+|.+|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Av~~q~~~ 83 (460)
T PRK06541 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVR--GEGCYIWDDRGK----RYLDGLAGLFVVQVGH-GRAELAEAAAKQAGT 83 (460)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEe--CcccEEEeCCCC----EEEECCccHHhccCCC-CCHHHHHHHHHHHhh
Confidence 445667889999999975443334667776 889999999999 9999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+.+...+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|.+ + |.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~~-~-----------r~~ii~ 149 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLA-KQYFKLTGKP-G-----------KHKVIS 149 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHH-HHHHHhcCCC-C-----------ccEEEE
Confidence 9877655678999999999999998865 689999999999999999999 6776555542 3 389999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
|+++|||+|.+++++++.+.++.. +.+. .+++.+++.|++++. + .+. +
T Consensus 150 ~~~~yHG~t~~a~s~~~~~~~~~~--------~~~~--------~~g~~~~~~~~~~~~--------~------~~~--~ 197 (460)
T PRK06541 150 RAIAYHGTTQGALAITGLPAFKAP--------FEPL--------VPGGFRVPNTNFYRA--------P------ELG--D 197 (460)
T ss_pred EcCcccCcchhhhcCcCChhhccc--------cCCC--------CCCcEEeCCCccccc--------c------ccC--C
Confidence 999999999999999886654421 1111 134566777754420 0 011 1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+...+...+++.+++.++. .+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||+|+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~----~~~~~~Aavi~EPv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEF----EGPDTVAAVFLEPV-QNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 1122334456677777753 24678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|++|||+||||+|+|||+|+|++++++++++.+.... ..+.|++||++||++||+++++|++++++++.++
T Consensus 273 ~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~--~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~ 350 (460)
T PRK06541 273 MFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGP--TMFLHGYTFGGHPVSAAVALANLDIFEREGLLDH 350 (460)
T ss_pred hhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999889999999999999886432 3466889999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCch-----HHHHHHHHHHHHCCcEEEec--C
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGS-----LYAASLLKKLREDGVYMRPL--G 823 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~-----~~~~~l~~~l~e~GV~~~p~--g 823 (863)
+.++++++.+.| .++. ++|.|.++||.|+|++++|.++. ++.++.. .....+...|+++||++.+. |
T Consensus 351 ~~~~g~~l~~~L----~~l~-~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g 425 (460)
T PRK06541 351 VRDNEPAFRATL----EKLL-DLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRG 425 (460)
T ss_pred HHHHHHHHHHHH----HHhh-cCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCC
Confidence 888888888755 3333 48889999999999999997643 1222211 12246788999999999873 4
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+||.||+++|++|||+++++|++++.++.
T Consensus 426 ~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 426 DPVVQLAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999997654
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-71 Score=631.68 Aligned_cols=415 Identities=26% Similarity=0.400 Sum_probs=340.1
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+.+.+++|+|+++.. ..|.+|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.
T Consensus 5 ~~~~~~~~~~~~~~~~----~~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~ 73 (422)
T PRK05630 5 REFDHRHIWHPYAAPG----VRNRLVTS--TDGVFLTLEDGS----TVIDAMSSWWSAAHGH-GHPRLKAAAHKQIDTMS 73 (422)
T ss_pred hhccccccccCcccCC----CCCeeEEe--ceeeEEEECCCC----EEEEcchhHHHhcCCC-CCHHHHHHHHHHHHhCC
Confidence 3345667899886521 24567776 899999999999 9999999999999999 89999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
+..+..+++++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|.+ + |++||+|+
T Consensus 74 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~~-~-----------r~~ii~~~ 139 (422)
T PRK05630 74 HVMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMA-LQYSKGQGHP-E-----------RTRLLTWR 139 (422)
T ss_pred CcccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCC-C-----------CcEEEEEC
Confidence 77654578999999999999998765 689999999999999999999 6776555542 4 38899999
Q ss_pred CCCccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 514 GSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
++|||+|.+++++++.. .++.. | .+.. +++.+++.|... . .+
T Consensus 140 ~~yHG~t~~als~~~~~~~~~~~----~----~~~~--------~~~~~~p~~~~~---------------~------~~ 182 (422)
T PRK05630 140 SGYHGDTFAAMSVCDPEGGMHSL----W----KGTL--------PEQIFAPAPPVR---------------G------SS 182 (422)
T ss_pred CCcCCccHHHhccCCCccccccc----c----cccC--------CCCeEcCCCccc---------------C------CC
Confidence 99999999999998742 23211 1 1110 122334444211 0 00
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
....+.+.+.+++.+. +++||||+||++||+||+++||++|+++|+++|++||++||+|||||||||||++
T Consensus 183 -~~~~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~ 253 (422)
T PRK05630 183 -PQEISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGEL 253 (422)
T ss_pred -hHHHHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchh
Confidence 0112234455555552 4799999999549999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|+.|||+||||+|+|||+|+|++++++++++.+........+.|++||++||++||+++++|++++++++.+++
T Consensus 254 ~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~ 333 (422)
T PRK05630 254 FATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQV 333 (422)
T ss_pred hHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999998899999999999999864211124679999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
+++++++++.+. . +.++|.|.+|||.|+|++|++.++. .+..+...|+++||++.+.|++++|.||+
T Consensus 334 ~~~g~~l~~~L~----~-l~~~~~v~~vRg~Gl~~~ie~~~~~--------~~~~~~~~~~~~Gl~~~~~g~~l~~~PpL 400 (422)
T PRK05630 334 KRIEAELIAGLS----P-LAHLPGVADVRVLGAIGVVEMEQPV--------DMEEATQAAVDHGVWLRPFGRLVYVMPPY 400 (422)
T ss_pred HHHHHHHHHHHH----H-hhcCCCeeeeeccccEEEEEECCcc--------cHHHHHHHHHHCCeEEEecCCEEEEECCc
Confidence 988888887553 2 3458899999999999999997542 14578889999999999989999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~ 852 (863)
++|++|||+++++|++++++
T Consensus 401 ~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 401 ITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-71 Score=631.74 Aligned_cols=415 Identities=27% Similarity=0.413 Sum_probs=343.2
Q ss_pred hhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc
Q 002941 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (863)
Q Consensus 356 ~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~ 435 (863)
.+.+++|+|++++.. ..++.+|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~ 78 (428)
T PRK07986 8 FDQRHIWHPYTSMTS--PLPVYPVVS--AEGCELILADGR----RLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHV 78 (428)
T ss_pred ccccccccCCccccc--CCCCeeEEe--eeeeEEEeCCCC----EEEEcchhHHhhcCCC-CCHHHHHHHHHHHhhcCCc
Confidence 345678999987643 234467776 788999999999 9999999999999999 8999999999999998877
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCC
Q 002941 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (863)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~s 515 (863)
.+..+.+++..+|+++|++++|.+ +++|+|+||||||||+|||+| |.|++.+| +|| ++||+|+++
T Consensus 79 ~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~~~~~g--~~r-----------~kii~~~~~ 143 (428)
T PRK07986 79 MFGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG--EPR-----------QRFLTLRHG 143 (428)
T ss_pred cccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcC--CCC-----------cEEEEECCC
Confidence 644568999999999999999864 689999999999999999999 66765554 343 789999999
Q ss_pred CccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 516 YHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
|||+|.+++++++.. .++.. +.++. +++.+++.|.+++ . .
T Consensus 144 yHG~t~~a~s~~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~~------------------~-----~ 184 (428)
T PRK07986 144 YHGDTFGAMSVCDPDNSMHSL--------YKGYL--------PENLFAPAPQSRF------------------D-----G 184 (428)
T ss_pred cCCCcHhhhcccCCchhhhhc--------cCCCC--------CCCEEECCCCccc------------------c-----h
Confidence 999999999998642 23211 11111 2334455553220 0 0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
++.....+.+++.++. .++++||||+||++||.||+++++++||++|+++|++||++||+|||||||||+|++|+
T Consensus 185 ~~~~~d~~~l~~~l~~-----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa 259 (428)
T PRK07986 185 EWDERDIAPFARLMAA-----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFA 259 (428)
T ss_pred hhHHHHHHHHHHHHHh-----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeee
Confidence 1111123556666642 35789999999955999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++|+.|||+|+||+|+|||+|+|++++++++++.+.... ...+.|++||++||++||+++++|++++++++.+++++
T Consensus 260 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~ 338 (428)
T PRK07986 260 CEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-AGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAA 338 (428)
T ss_pred ecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999987521 12356899999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~ 834 (863)
+++++++.+ .++ .+++.|++|||.|+|+++++.++. .+..+.+.|+++||++++.|+.++|.||+++
T Consensus 339 ~g~~l~~~l----~~l-~~~~~i~~vRg~Gl~~~ve~~~~~--------~~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~i 405 (428)
T PRK07986 339 IEAQLREEL----APL-RDAPMVADVRVLGAIGVVETTRPV--------NMAALQRFFVEQGVWIRPFGKLIYLMPPYII 405 (428)
T ss_pred HHHHHHHHH----HHH-hcCCCEEeEeccceEEEEEeCCcc--------cHHHHHHHHHHCCcEEEecCCEEEEeCCCCC
Confidence 888888755 333 358899999999999999997542 2457889999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~ 852 (863)
|++||++++++|++++++
T Consensus 406 t~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 406 LPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999999854
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=630.01 Aligned_cols=412 Identities=22% Similarity=0.268 Sum_probs=337.2
Q ss_pred EEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC
Q 002941 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (863)
Q Consensus 378 ~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p 457 (863)
+|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.+++..+|||+|++.+|
T Consensus 16 ~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 16 VISH--GKGVYLYDQNGN----KYFDGSSGAVTAGIGH-GVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred eEEe--eeeeEEEeCCCC----EEEECchhHHhccCCC-CCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 4665 899999999999 9999999999999999 89999999999999987664445679999999999999998
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCc
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~ 537 (863)
.. +++++|+||||||||+|||+| |+|++.+|. +|| ++||+|+++|||+|.+++++++...++..
T Consensus 89 ~~-~~~v~f~~sGsEAve~AlklA-r~~~~~rg~-t~r-----------~~ii~~~~~yHG~t~~als~~~~~~~~~~-- 152 (447)
T PRK06917 89 GD-LNWSFFVNSGSEANETAMKIA-IQHFQERGI-QGK-----------HKILSRWMSYHGITMGALSMSGHPLRRQR-- 152 (447)
T ss_pred CC-CCEEEEeCChHHHHHHHHHHH-HHHHHhcCC-CCC-----------CEEEEECCCcCCccHHHHHhcCCcccccc--
Confidence 64 579999999999999999999 567766665 354 89999999999999999999875544321
Q ss_pred CCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 002941 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (863)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~ 617 (863)
+.++. .++.+++.|.+++ ++++ .+...+...+.+.+++.++. .++
T Consensus 153 ------~~~~~--------~~~~~~~~p~~~~---------------~~~~--~~~~~~~~~~~~~le~~i~~----~~~ 197 (447)
T PRK06917 153 ------FVSLL--------EDYPTISAPYCYR---------------CPVQ--KVYPTCQLACATELETAIER----IGA 197 (447)
T ss_pred ------CCCCC--------CCCeEeCCCcccc---------------cccC--CChHHHHHHHHHHHHHHHHh----cCC
Confidence 11111 1223344554331 0111 01112223345566666653 334
Q ss_pred CcEEEEEEcccccc-CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCC
Q 002941 618 GCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (863)
Q Consensus 618 ~~iAAvIvEPViqg-~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~ 696 (863)
++|||||+||+ || .||+++||++||++|+++|++||++||+|||+|||||||++|+++++|+.|||+||||+|+|||+
T Consensus 198 ~~iAAvi~EPi-~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~ 276 (447)
T PRK06917 198 EHIAAFIAEPI-IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYT 276 (447)
T ss_pred CceEEEEEecc-ccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCc
Confidence 68999999998 88 57899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
|+|++++++++++.+.... ..+.|++||++||++|||++|+|++++++++.+++.++++++++.| .++.+++|.
T Consensus 277 Pi~a~~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~~ 350 (447)
T PRK06917 277 PIAATVVSDRVMEPILRGS--RSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGL----QKVQQQSTI 350 (447)
T ss_pred ceEEEEEcHHHHHHHhccC--cccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHhcCCC
Confidence 9999999999999886432 2456889999999999999999999988888888888888887754 556678899
Q ss_pred eeEecccceEEEEEEccCCc-CCCCc--hHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGC-NAGYG--SLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~-~~~~~--~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|.+|||.|+|++++|.++.. ++++. ......+.+.|+++||++.+. ++.+++.||+++|++|||+++++
T Consensus 351 i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~ 430 (447)
T PRK06917 351 IGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSI 430 (447)
T ss_pred EEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHH
Confidence 99999999999999975431 12221 245778899999999999875 57999999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 846 LYQRLEEFD 854 (863)
Q Consensus 846 L~~~l~~l~ 854 (863)
|+++++++.
T Consensus 431 l~~~l~~~~ 439 (447)
T PRK06917 431 FAKSVEEMM 439 (447)
T ss_pred HHHHHHHHH
Confidence 999998863
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=628.85 Aligned_cols=428 Identities=22% Similarity=0.316 Sum_probs=347.3
Q ss_pred cccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC
Q 002941 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (863)
Q Consensus 358 ~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~ 437 (863)
.+++|+||+++..+.. .|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~-~p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~ 86 (445)
T PRK09221 15 LDAHWMPFTANRQFKA-APRLLVS--AEGMYYTDADGR----KILDGTAGLWCCNAGH-GRPEIVEAVARQAATLDYAPA 86 (445)
T ss_pred hhhcccCcccccccCC-CCceEEe--ccccEEEeCCCC----EEEEccccHhhccCCC-CCHHHHHHHHHHHHhccCccc
Confidence 4568999887644322 4567776 889999999999 9999999999999999 899999999999999887765
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCc
Q 002941 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (863)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYH 517 (863)
..+.+++..+|+++|++++|.+ +++|+|+||||||||+|||+| |.|++.+|++ + |.+||+|+++||
T Consensus 87 ~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~~-~-----------r~~ii~~~~~yH 152 (445)
T PRK09221 87 FQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIA-LAYHRARGQG-T-----------RTRLIGRERGYH 152 (445)
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCC-C-----------CcEEEEECCCcC
Confidence 5578999999999999999865 689999999999999999999 6776655531 3 378999999999
Q ss_pred cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhccccccccccccchhhcccCchhH
Q 002941 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (863)
Q Consensus 518 G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 596 (863)
|+|.+++++++.+.++..+ ++.. +++.++++|+ .++ +.+.... ...
T Consensus 153 G~t~gals~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~~~~--~~~ 199 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKMF--------GGLL--------PGVDHLPHTLDLPE---------------NAFSKGQ--PEH 199 (445)
T ss_pred ccchhhhccCCChhhhhcc--------CCCC--------CCCeEeCCCccccc---------------cccCCCh--HHH
Confidence 9999999999866544211 1111 1234455553 211 0111100 122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh
Q 002941 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 597 ~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
...+.+.+++.++. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 200 ~~~~~~~l~~~i~~----~~~~~iAavi~Epv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~ 274 (445)
T PRK09221 200 GAELADDLERLVAL----HDASTIAAVIVEPM-AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHH
Confidence 23345566666653 33578999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 677 ~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
++|+.|||+|+||+|+|||+|+|++++++++++.+.... ....+.|++||++||++||+++++|++++++++.++++++
T Consensus 275 ~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~ 354 (445)
T PRK09221 275 RFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAEL 354 (445)
T ss_pred hcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999999999999999999999886421 1123568999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 835 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t 835 (863)
++++++.|+ + +.++|.|.+|||.|+|+++++...... ....+..+.+.|+++||++++.++.+||+||+++|
T Consensus 355 g~~l~~~l~----~-l~~~~~v~~vrg~Gl~~~v~~~~~~~~---~~~~~~~~~~~~~~~Gv~~~~~~~~lr~~Ppl~~t 426 (445)
T PRK09221 355 APYFEDAVH----S-LKGLPHVIDIRNIGLVAGIELAPRPGA---PGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIE 426 (445)
T ss_pred HHHHHHHHH----h-hccCCCEEEEecCceEEEEEEeccccc---ccchHHHHHHHHHHCCeEEeecCCEEEEECCccCC
Confidence 888877553 3 346888999999999999999753211 11235678899999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l 853 (863)
++|||+++++|+++++++
T Consensus 427 ~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 427 KAQIDELVDALGDALRAV 444 (445)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-70 Score=626.13 Aligned_cols=429 Identities=22% Similarity=0.315 Sum_probs=345.8
Q ss_pred cccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC
Q 002941 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (863)
Q Consensus 358 ~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~ 437 (863)
.++.|+|+++..... ..|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+...
T Consensus 12 ~~~~~~~~~~~~~~~-~~p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~ 83 (442)
T PRK13360 12 LSAFWMPFTANRQFK-KAPRLLVA--AKGMYYTTHDGR----RVLDGTAGLWCVNAGH-GRPEIVEAVRAQAGELDYAPA 83 (442)
T ss_pred ccccccCcccccccc-CCCceEEe--eeeeEEEeCCCC----EEEECchhHHHhccCC-CCHHHHHHHHHHHHhCCCccc
Confidence 345788887654332 24567776 889999999999 9999999999999999 899999999999999887765
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCc
Q 002941 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (863)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYH 517 (863)
..+.+++..+||++|++++|.+ +++|+|+||||||||+|||+| |.|++.+|. ++ |.+||+|.++||
T Consensus 84 ~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~g~-~~-----------r~~ii~~~~~yH 149 (442)
T PRK13360 84 FQMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIA-LAYHRARGE-GS-----------RTRLIGRERGYH 149 (442)
T ss_pred CCcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CC-----------CcEEEEEcCCcC
Confidence 5578999999999999999855 689999999999999999999 667655443 23 378999999999
Q ss_pred cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHH
Q 002941 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (863)
Q Consensus 518 G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 597 (863)
|+|.+++++++...++..+ ++.. +++.++++|.... ++.+.... ....
T Consensus 150 G~t~gals~tg~~~~~~~~--------~~~~--------~~~~~~p~~~~~~--------------~~~~~~~~--~~~~ 197 (442)
T PRK13360 150 GVGFGGISVGGIVPNRKAF--------GALL--------PGVDHLPHTLDLA--------------RNAFSKGQ--PEHG 197 (442)
T ss_pred CccHhhhhccCChhhhhcc--------CCCC--------CCCEEeCCCchhh--------------ccccCCCh--HHHH
Confidence 9999999999866554321 1111 1234455543110 01111100 1222
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh
Q 002941 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 598 ~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
..+.+.+++.++. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|++++
T Consensus 198 ~~~~~~le~~l~~----~~~~~~aavivEpi-~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 272 (442)
T PRK13360 198 AELADELERLVTL----HDASTIAAVIVEPV-AGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQY 272 (442)
T ss_pred HHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhh
Confidence 3345667777752 34578999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 678 ~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
+|+.|||+||||+|+|||+|+|++++++++++.+..... ...+.|++||++||++||+++++|++++++++.+++.+++
T Consensus 273 ~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g 352 (442)
T PRK13360 273 FGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLA 352 (442)
T ss_pred cCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999998864221 1224688999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcH
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 836 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~ 836 (863)
+++++.+ .+ +.+++.|.+|||.|+|+++++...... ....+..+...|+++||++.+.++.+||+||+++|+
T Consensus 353 ~~l~~~l----~~-l~~~~~v~~vrG~Gl~~~~~l~~~~~~---~~~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~~t~ 424 (442)
T PRK13360 353 PYWEDAL----HS-LRDAPHVIDIRNLGLVGAVELAPRDGK---PGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEE 424 (442)
T ss_pred HHHHHHH----HH-hhcCCCeeeeeccceEEEEEEecCCCC---cchhHHHHHHHHHHCCcEEEecCCEEEEeCCCccCH
Confidence 8887754 33 345788999999999999999753211 112456788899999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
+|||+++++|+++++++
T Consensus 425 ~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 425 AQIDELFDILAQALKET 441 (442)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999754
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-70 Score=626.65 Aligned_cols=404 Identities=18% Similarity=0.179 Sum_probs=326.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|+++..+.....+.+++..+|+++|++.
T Consensus 46 p~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~ 118 (464)
T PRK06938 46 PLALKR--ARGIYVEDVEGR----QFIDCLAGAGTLALGH-NHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFAS 118 (464)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEccCCccccccCC-CCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHh
Confidence 456666 889999999999 9999999999999999 899999999999986433222356799999999999999
Q ss_pred cCCCCC--CeEEEe-CChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 456 VGKGWA--SRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 456 ~p~~~~--~~v~f~-~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+|.+.. ++++|+ ||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...+
T Consensus 119 ~p~~~~~~~~v~f~~~SGSEAve~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~als~t~~~~~ 179 (464)
T PRK06938 119 LPEAFAREAKIQFCGPTGTDAVEAALKLV-KTA-------TGR-----------STVLSFQGGYHGMSQGALSLMGNLGP 179 (464)
T ss_pred CcccccccceEEEeCCCcHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCccCCccHHHHhhcCCccc
Confidence 885411 377666 89999999999999 666 454 78999999999999999999886544
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+.. ++++ .+++.++++|+++++ +++... +.....+.+.+++.+++.
T Consensus 180 ~~~--------~~~~--------~~~~~~~~~p~~~~~---------------~~~~~~--~~~~~~~~~~l~~~i~~~- 225 (464)
T PRK06938 180 KKP--------LGAL--------LPGVQFLPYPYDYRC---------------PFGLGG--EAGVRANLHYLENLLDDP- 225 (464)
T ss_pred ccc--------CCCC--------CCCcEEeCCCccccc---------------cccCch--hhHHHHHHHHHHHHHHhh-
Confidence 321 1111 123456777755421 111110 122233456677777531
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
..++++|||||+||| ||.+|+++||++||++|+++|++||+|||+|||+|||||||++|+++++|++|||+|+||+||
T Consensus 226 -~~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglg 303 (464)
T PRK06938 226 -ESGVVLPAAVILEVV-QGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIG 303 (464)
T ss_pred -ccCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeecccc
Confidence 112358999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
|| +|+|++++++++ +.+.. ..|++||+|||++|||++|+|++++++++.++++++++++++.| .++.+
T Consensus 304 gG-~PlsAv~~~~~~-~~~~~------~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L----~~l~~ 371 (464)
T PRK06938 304 GS-LPLAVVVYREWL-DTWQP------GAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHL----RQLQR 371 (464)
T ss_pred CC-CceEEEeehhHh-hccCC------CCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHH
Confidence 99 899999999885 65532 25899999999999999999999998888888888888777654 55667
Q ss_pred cCCCeeEecccceEEEEEEccCCcC------CCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCN------AGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~------~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v 843 (863)
++|.|.+|||.|+|++++|.++... .+.....+..+...|+++||++.+. +++++|.||+++|++|||+++
T Consensus 372 ~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~ 451 (464)
T PRK06938 372 DYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVA 451 (464)
T ss_pred hCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHH
Confidence 8999999999999999999754211 1112345677899999999999874 489999999999999999999
Q ss_pred HHHHHHHHHH
Q 002941 844 LKLYQRLEEF 853 (863)
Q Consensus 844 ~~L~~~l~~l 853 (863)
+++++++.++
T Consensus 452 ~~l~~~l~~~ 461 (464)
T PRK06938 452 EIFAEAVAAA 461 (464)
T ss_pred HHHHHHHHHH
Confidence 9999999874
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-70 Score=621.14 Aligned_cols=375 Identities=21% Similarity=0.283 Sum_probs=319.0
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCe
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~ 463 (863)
++|+|+||.||+ +|||+.+|+|++++|| +||+|++|+.+|++++.+.+ ..+.+++..+|||+|++.+|.+ +++
T Consensus 64 ~~g~~l~D~dG~----~ylD~~~g~~~~~lGh-~hp~v~~Av~~ql~~l~~~~-~~~~~~~~~~lAe~L~~~~p~~-~~~ 136 (442)
T TIGR03372 64 GGLNTLIDTQGN----EFIDCLGGFGIFNVGH-RNPNVIAAVENQLAKQPLHS-QELLDPLRALLAKTLAALTPGK-LKY 136 (442)
T ss_pred CCeeEEEECCCC----EEEECCccHHhhhcCC-CCHHHHHHHHHHHHhCCCcc-cccCCHHHHHHHHHHHHhCCCC-cCE
Confidence 778999999999 9999999999999999 89999999999999987654 2356899999999999999865 579
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccC
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~ 543 (863)
|+|+||||||||+|||+| |.|+..+ || ++||+++++|||+|.+++++|+.+.++..
T Consensus 137 v~f~~SGsEA~e~AlklA-r~~t~~~----gr-----------~~ii~~~~~yHG~t~~~ls~t~~~~~~~~-------- 192 (442)
T TIGR03372 137 SFFCNSGTESVEAALKLA-KAYQSPR----GK-----------FTFIAASGAFHGKSLGALSATAKPAFRKP-------- 192 (442)
T ss_pred EEEeCCchHHHHHHHHHH-HHHHhhc----CC-----------cEEEEECCCccCCCHHHhhccCCcccCCC--------
Confidence 999999999999999999 6775322 33 78999999999999999999986655421
Q ss_pred CCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 002941 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (863)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv 623 (863)
+.+. .+++.++++|+. +.+++.+++. ..+++++|||
T Consensus 193 ~~p~--------~~~~~~~p~~d~----------------------------------~~~~~~l~~~--~~~~~~vAav 228 (442)
T TIGR03372 193 FMPL--------LPGFHHVAFGDI----------------------------------EAMLKALNEC--KKTGDDVAAI 228 (442)
T ss_pred CCCC--------CCCCEEeCCCCH----------------------------------HHHHHHHHHH--hcCCCcEEEE
Confidence 1111 123455555531 1222333321 1245789999
Q ss_pred EEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeec
Q 002941 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (863)
Q Consensus 624 IvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~ 703 (863)
|+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|+.|||+||||+|||||+|+|++++
T Consensus 229 IvEpv-~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~ 307 (442)
T TIGR03372 229 ILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIA 307 (442)
T ss_pred EEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEe
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEecc
Q 002941 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVA 782 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg 782 (863)
++++++.+.. .++.|++||+|||++|||++|+|++++++++.++++++++++++.| .++..++| .|.+|||
T Consensus 308 ~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L----~~l~~~~~~~i~~vRG 379 (442)
T TIGR03372 308 TEAVFSVLFD----NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGF----QQLAAEYPDLIIEARG 379 (442)
T ss_pred cHHHHHhhhc----cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHHhCCCceEEEec
Confidence 9999998853 2356899999999999999999999998888888888888887754 55667888 7899999
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.|+|++|++.++. ....+++.|+++||++.+. ++.+||.||+++|++|+|+++++|++++
T Consensus 380 ~Gl~~giel~~~~--------~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 380 KGLLMAIEFRDNE--------IGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred ceEEEEEEeCChH--------HHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 9999999998652 4677999999999999764 4899999999999999999999998864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=623.95 Aligned_cols=388 Identities=21% Similarity=0.265 Sum_probs=328.0
Q ss_pred eEEEEeecccc-eEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 376 VTVIDSRCGEN-FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 376 ~~~i~~~~G~G-~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
+.++++ |+| +|+||.||+ +|||+.+|+|+.++|| +||+|++|+++|++++.+.+ ..+.+++..+||++|++
T Consensus 64 ~~~~~~--~~G~~~l~D~dG~----~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~lae~L~~ 135 (459)
T PRK11522 64 GAVEWQ--AGGLNTLVDTQGQ----EFIDCLGGFGIFNVGH-RNPVVVSAVQNQLAKQPLHS-QELLDPLRAMLAKTLAA 135 (459)
T ss_pred CeeEEe--ccCeEEEEECCCC----EEEECCcCHHhhhcCC-CCHHHHHHHHHHHhhCcccc-cccCCHHHHHHHHHHHH
Confidence 346665 899 999999999 9999999999999999 89999999999999987764 24679999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++|.+ +++|+|+||||||||+|||+| |.|+..+ | |.+||+++++|||+|.+++++++...|+.
T Consensus 136 ~~p~~-~~~v~f~~SGsEAve~AlklA-r~~t~~~----g-----------r~~ii~~~~~yHG~t~~~ls~~~~~~~~~ 198 (459)
T PRK11522 136 LTPGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR----G-----------KFTFIATSGAFHGKSLGALSATAKSTFRK 198 (459)
T ss_pred hCCCC-CCEEEEeCCchHHHHHHHHHH-HHHhccC----C-----------CcEEEEecCCCCCCcHHHhhhcCCccccc
Confidence 99865 689999999999999999999 6774322 2 27899999999999999999988665542
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
+ +.+.. +++.++++| | .+.+++.|+.. .
T Consensus 199 ~--------~~~~~--------~~~~~~~~~--------------------------d--------~~~l~~~l~~~--~ 226 (459)
T PRK11522 199 P--------FMPLL--------PGFRHVPFG--------------------------N--------IEAMRTALSEC--K 226 (459)
T ss_pred C--------CCCCC--------CCCcccCCC--------------------------C--------HHHHHHHHHHh--h
Confidence 1 11111 122333333 1 12344444321 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|+.|||+||||+||||
T Consensus 227 ~~~~~iAavIvEpv-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggG 305 (459)
T PRK11522 227 KTGDDVAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGG 305 (459)
T ss_pred ccCCcEEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhhCC
Confidence 23578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+... ++.|++||+|||++||+++|+|++++++++.+++.++++++++.| .++..++
T Consensus 306 ~~Pigav~~~~~i~~~~~~~----~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 377 (459)
T PRK11522 306 VMPIGATIATEEVFSVLFDN----PFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGF----RQLAREY 377 (459)
T ss_pred CccceeEEEcHHHHHHhccC----CcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 99999999999999987532 356899999999999999999999998888888888888887754 5556678
Q ss_pred C-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 775 R-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 775 p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
| .|++|||.|+|+++++.++. .+..+.+.|+++||++.+. ++++||.||+++|++|||+++++|++++
T Consensus 378 ~~~i~~VrG~Gl~~giel~~~~--------~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l 449 (459)
T PRK11522 378 PDLVQEARGKGMLMAIEFVDNE--------IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKAL 449 (459)
T ss_pred CCceeeEEeceeEEEEEecCch--------HHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 8 78999999999999998642 4677899999999999875 4899999999999999999999999999
Q ss_pred HHHHHHH
Q 002941 851 EEFDKVE 857 (863)
Q Consensus 851 ~~l~~~~ 857 (863)
+++.+..
T Consensus 450 ~~~~~~~ 456 (459)
T PRK11522 450 AAMRVSV 456 (459)
T ss_pred HHHHHhh
Confidence 8877544
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-69 Score=617.89 Aligned_cols=411 Identities=23% Similarity=0.295 Sum_probs=335.2
Q ss_pred ccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC
Q 002941 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (863)
Q Consensus 359 ~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~ 438 (863)
+++|+|++.. ..+.+|++ |+|+|+||.||+ +|||+++ .|++++|| +||+|++|+++|++++.+.. .
T Consensus 43 ~~~~~~~~~~-----~~~~~i~~--a~G~~l~D~dG~----~ylD~~g-~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~-~ 108 (459)
T PRK06082 43 EVFLHQAMST-----PCLDVLAS--AEGIYIEDVDGK----KYMDFHG-NNVHQLGY-GHPHVIEKVKEQMAKLPFSP-R 108 (459)
T ss_pred HHhcccccCC-----CCCceEEe--eeeeEEEECCCC----EEEEccc-HhhcccCC-CCHHHHHHHHHHHHhCCCcc-C
Confidence 4466765432 12567776 788999999999 9999984 59999999 89999999999999987754 3
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.+++..+|+++|++++|.+ +++|+|+||||||||+|+|+| |+| +|| .+||+|+++|||
T Consensus 109 ~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~-------tgr-----------~~ii~~~~~yHG 168 (459)
T PRK06082 109 RFTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLA-RHI-------TGN-----------FKVVSLWDSFHG 168 (459)
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHH-HHh-------cCC-----------CEEEEEeCCCcC
Confidence 568999999999999999854 579999999999999999999 666 454 789999999999
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
+|.+++++++.+.++.. +++. .+++.+++.|+.++ ++|. +.+....
T Consensus 169 ~t~~a~s~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~---~~~~~~~ 214 (459)
T PRK06082 169 ASLDAISVGGEACFRQG--------MGPL--------MAGVERIPPAVSYR---------------GAFP---DADGSDV 214 (459)
T ss_pred ccHHHHhhcCCcccccC--------CCCC--------CCCCEEeCCCcccc---------------cccC---ChhHHHH
Confidence 99999999886655421 1111 13455666665442 1111 1122333
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+.+++.+++ .+++||||+||| ||+| +++||++||++|+++|++||++||+|||+|||||||++|+++++
T Consensus 215 ~~~~~l~~~i~~------~~~vAavIvEPv-~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 215 HYADYLEYVIEK------EGGIGAFIAEAV-RNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred HHHHHHHHHHhc------CCCEEEEEECCc-cCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 455667776642 357999999998 9985 78899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 679 gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
|++|||+|+||+|||||+|+|++++++++++.+.. .+.| +||++||++|||++|+|++++++++.+++.+++++
T Consensus 287 gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~-----~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~ 360 (459)
T PRK06082 287 GIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQI-----SLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQF 360 (459)
T ss_pred CCCCCEEEecccccCCCCcceEEEEcHHHHhhccC-----CCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999998899999999998866532 1345 89999999999999999999888888898888888
Q ss_pred HHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHH
Q 002941 759 LRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPE 837 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~e 837 (863)
+++.| .++.+++|.|++|||.|+|++++|..+..........+..+...|+++||++.+. ++.++++||+++|++
T Consensus 361 l~~~L----~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~ 436 (459)
T PRK06082 361 MRERL----LEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITRE 436 (459)
T ss_pred HHHHH----HHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHH
Confidence 88755 4566778999999999999999998543111122234667888999999999886 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~~ 855 (863)
|||++++++++++.++.+
T Consensus 437 eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 437 ELTQALAILEEAIAKICQ 454 (459)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988754
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-69 Score=617.87 Aligned_cols=405 Identities=19% Similarity=0.178 Sum_probs=325.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|+++..+.....+.+++..+||++|++.
T Consensus 41 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGH-~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~ 113 (459)
T PRK06931 41 PLAIAK--AQGVWVTDVEGN----QYLDCLAGAGTLALGH-NHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSL 113 (459)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEcccchhhccCCC-CCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHh
Confidence 556666 889999999999 9999999999999999 899999999999987443222346789999999999999
Q ss_pred cCCCC--CCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 456 VGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 456 ~p~~~--~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
+|... ...+||+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...++
T Consensus 114 ~p~~~~~~~~~f~~~SGsEAve~AlklA-r~~-------tgr-----------~~Ii~~~~~yHG~t~~als~t~~~~~~ 174 (459)
T PRK06931 114 LPGQGKEYCLQFTGPSGADAVEAAIKLA-KTY-------TGR-----------SNVISFSGGYHGMTHGALAVTGNLSPK 174 (459)
T ss_pred CCCccccceEEEeCCCcHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCccHHHHhhcCCcccc
Confidence 87431 124577799999999999999 666 464 789999999999999999998865544
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.. +.++ .+++.++++|+.++. +++... ++..+.+.+.+++.+++.
T Consensus 175 ~~--------~~~~--------~~~~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~~~~~~~~~~-- 219 (459)
T PRK06931 175 NA--------VNGL--------MPGVQFMPYPHEYRC---------------PLGIGG--EAGVKALTYYFENFIEDV-- 219 (459)
T ss_pred cC--------CCCC--------CCCcEEeCCCccccc---------------cccCCc--hhHHHHHHHHHHHHHHhh--
Confidence 21 1111 134566777765521 121110 111122233344444321
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
..++++|||||+||| ||++|+++||++||++|+++|++||+|||+|||+|||||||++|+++++|++|||+|+||+|||
T Consensus 220 ~~~~~~iAAvI~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~g 298 (459)
T PRK06931 220 ESGVRKPAAVILEAI-QGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGG 298 (459)
T ss_pred hcCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccC
Confidence 124578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|+|++++++++ +.+.. ..|++||+|||++||+|+|+|++++++++.+++.++++++++.| .++.++
T Consensus 299 G-~Pi~av~~~~~~-~~~~~------~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L----~~l~~~ 366 (459)
T PRK06931 299 G-LPLAVLGIKKEF-DAWQP------GGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQL----AELQKR 366 (459)
T ss_pred C-cceeeeeeHHHH-hhccC------CCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 9 899999998874 66632 25899999999999999999999998888888888888887754 556678
Q ss_pred CCCeeEecccceEEEEEEccCCcCC------CCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~------~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+|.|.+|||.|+|+++++.++.... +.....+..+...|+++||++.+. ++++++.||+++|++|||++++
T Consensus 367 ~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~ 446 (459)
T PRK06931 367 YPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFID 446 (459)
T ss_pred CCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999997642111 112345677899999999999875 4899999999999999999999
Q ss_pred HHHHHHHHHH
Q 002941 845 KLYQRLEEFD 854 (863)
Q Consensus 845 ~L~~~l~~l~ 854 (863)
+|+++|.++.
T Consensus 447 ~l~~~l~~~~ 456 (459)
T PRK06931 447 RFEQALLAAV 456 (459)
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=616.40 Aligned_cols=406 Identities=19% Similarity=0.216 Sum_probs=331.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+||||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+|+|++.
T Consensus 36 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~ 108 (457)
T PRK05639 36 PLVPKR--GFGALIEDVDGN----VFIDFLAGAAAASTGY-SHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEI 108 (457)
T ss_pred CceEEe--eecCEEEeCCCC----EEEECCcCHHhhccCC-CCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhh
Confidence 456766 889999999999 9999999999999999 899999999999999877654334578999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+ +++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++.
T Consensus 109 ~p~~-~~~v~f~~SGsEA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 168 (457)
T PRK05639 109 SPIE-NPKVLFGLSGSDAVDMAIKVS-KFS-------TRR-----------PWILAFIGAYHGQTLGATSVAAFQSSQKR 168 (457)
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCccHHHHHHcCCCccccc
Confidence 9854 579999999999999999999 666 454 789999999999999999988642 2221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++.+. .+++.++++|+.++.. +.. ....+.+.+...+.+.+++.+... .
T Consensus 169 --------~~~~~--------~~~~~~~p~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~le~~l~~~--~ 217 (457)
T PRK05639 169 --------GFSPL--------MPNVVWIPYPNPYRNP--------WGI-----NGYEEPDELINRFLDYLENYVFSH--V 217 (457)
T ss_pred --------CCCCC--------CCCceEeCCCcccccc--------ccc-----cccCCHHHHHHHHHHHHHHHHHHh--h
Confidence 11111 1345567777554210 100 001121233344555666655320 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+||||+|+||
T Consensus 218 ~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG 296 (457)
T PRK05639 218 VPPDEVAALFAEPI-QGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG 296 (457)
T ss_pred cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCC
Confidence 23678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. .+++||++||++|||++|+|++++++++.+++.++++++++.| .++..++
T Consensus 297 -~pi~av~~~~~i~~~~~~-------~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 364 (457)
T PRK05639 297 -MGLSGVIGRKELMDLTSG-------SALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRL----LEMKESF 364 (457)
T ss_pred -CcceeEEehHHHHhhcCC-------CcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 799999999999994321 2678999999999999999999998888888888888877744 5566788
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.+|||.|+|+++++..+.. ......+..+.+.|+++||++.+.+ +.+||.||+++|++|||+++++|+++++
T Consensus 365 ~~~~~VrG~Gl~~gve~~~~~~--~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~ 442 (457)
T PRK05639 365 EVIGDVRGKGLMIGVEIVKENG--KPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIK 442 (457)
T ss_pred CCEEeeccceeEEEEEEecCCC--CCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999975431 1223456788999999999998764 8999999999999999999999999998
Q ss_pred HHH
Q 002941 852 EFD 854 (863)
Q Consensus 852 ~l~ 854 (863)
++.
T Consensus 443 ~~~ 445 (457)
T PRK05639 443 DAL 445 (457)
T ss_pred HHH
Confidence 875
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-68 Score=611.90 Aligned_cols=401 Identities=24% Similarity=0.279 Sum_probs=324.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 39 p~~i~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~ 111 (443)
T PRK06058 39 PVYVAR--AGGGIVEDVDGN----RLIDLGSGIAVTSVGN-SAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRL 111 (443)
T ss_pred CceEEe--eeeeEEEeCCCC----EEEEcCcchhhhccCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 456766 889999999999 9999999999999999 899999999999999876654446789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|..+.++++|+||||||||+|||+| |.| +|| .+||+++++|||+|.+++++++.. .++
T Consensus 112 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~al~~~~~~~~~~- 171 (443)
T PRK06058 112 TPGDHEKRSALFNSGAEAVENAVKIA-RSY-------TGR-----------QAVVVFDHAYHGRTNLTMALTAKSMPYK- 171 (443)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCcChHHHHhhcCCCcccc-
Confidence 88543469999999999999999999 667 454 789999999999999999998743 122
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.++++.. +++.++++|+.++. .+....+..+....+.+.+++.+
T Consensus 172 -------~~~~~~~--------~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~------ 215 (443)
T PRK06058 172 -------SGFGPFA--------PEVYRAPMSYPYRD---------------PKGLATDGEEAAARAITVIEKQV------ 215 (443)
T ss_pred -------cccCCCC--------CCceEcCCCccccc---------------ccccccchHHHHHHHHHHHHHhh------
Confidence 1112111 22334555543310 00000110111122223333322
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||+ ||+||+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+|+||
T Consensus 216 -~~~~iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G 293 (443)
T PRK06058 216 -GADNLAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGG 293 (443)
T ss_pred -CCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCC
Confidence 3578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .|++||++||++||||+++|++++++++.+++.++++++.+. |.++..++
T Consensus 294 -~Pi~av~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~----L~~l~~~~ 362 (443)
T PRK06058 294 -LPLSAVTGRAEIMDAPHPG------GLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDR----LRALAAED 362 (443)
T ss_pred -CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----HHHHHhhC
Confidence 7999999999999988642 488999999999999999999998888888888777777764 45566778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.|.+|||.|+|+++++.++... ......+..+.+.|+++||++.+. ++.+|+.||+++|+++||+++++|+++++
T Consensus 363 ~~i~~vrg~G~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~ 441 (443)
T PRK06058 363 DRIGDVRGRGAMIAIELVKPGTT-EPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALA 441 (443)
T ss_pred CcEEeeeccceEEEEEEecCCCC-CCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999765312 123345778899999999999874 48999999999999999999999999986
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 442 ~~ 443 (443)
T PRK06058 442 DL 443 (443)
T ss_pred hC
Confidence 53
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=607.19 Aligned_cols=406 Identities=20% Similarity=0.258 Sum_probs=336.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 25 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~ 97 (445)
T PRK08593 25 PLVIDH--GYGATLTDVDGK----TYIDLLASASSQNVGH-APPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCEL 97 (445)
T ss_pred CceEEe--eeeCEEEeCCCC----EEEECCccHHhhcCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 456766 888999999999 9999999999999999 899999999999999888765456899999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC-CCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~-~~~ 534 (863)
+|.++.++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++... ++.
T Consensus 98 ~p~~~~~~v~f~~SGseA~e~AiklA-r~~-------tgr-----------~~ii~~~~~YHG~t~~als~s~~~~~~~~ 158 (445)
T PRK08593 98 APGDFEKRVTFGLSGSDANDGIIKFA-RAY-------TGR-----------PYIISFTNAYHGSTYGSLSMSGISLNMRR 158 (445)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCCCcHHHHhhcCCCccccc
Confidence 98653479999999999999999999 666 454 7899999999999999999987432 221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++. .+++.++++|+.+++ .+.. ++ .+....+.+.+++.+++.
T Consensus 159 --------~~~~~--------~~~~~~~~~p~~~~~---------------~~~~-~~-~~~~~~~~~~~~~~~~~~--- 202 (445)
T PRK08593 159 --------KYGPL--------LPGFVHIPFPDKYRG---------------MYEE-PD-ANFVEEYLAPLKEMFEKY--- 202 (445)
T ss_pred --------CCCCC--------CCCcEEeCCCccccc---------------cccC-Cc-HHHHHHHHHHHHHHHHhh---
Confidence 11111 134566777765421 1111 11 122233455666666431
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+++||
T Consensus 203 ~~~~~iAavI~EPv-~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G 281 (445)
T PRK08593 203 LPADEVACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG 281 (445)
T ss_pred cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCC
Confidence 13468999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .|++||++||++|||++++|++++++++.+++.++++++++.| .++.+++
T Consensus 282 -~p~gav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 350 (445)
T PRK08593 282 -MPMSAIVGRKEIMESLEAP------AHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRF----DQWVSKY 350 (445)
T ss_pred -cccEEEEEcHHHHhhhccC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhcC
Confidence 8999999999999988532 3778999999999999999999988888888888888887754 4566789
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.|++|||.|+|+++++..+..........+..+...|+++||++.+. ++++||.||+++|++|||+++++++++++++
T Consensus 351 ~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 430 (445)
T PRK08593 351 NFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTAL 430 (445)
T ss_pred CcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997543111123345678999999999999874 5999999999999999999999999999887
Q ss_pred HH
Q 002941 854 DK 855 (863)
Q Consensus 854 ~~ 855 (863)
.+
T Consensus 431 ~~ 432 (445)
T PRK08593 431 EA 432 (445)
T ss_pred hc
Confidence 54
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=604.75 Aligned_cols=420 Identities=31% Similarity=0.455 Sum_probs=347.1
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++|+|++++... ..|+++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~ 74 (423)
T PRK05964 4 LMALDLSHVWHPYTQMKLH--PPPIPIVR--AEGAYLYLADGR----ELIDAISSWWVATHGH-NHPYIDQAIREQLDRL 74 (423)
T ss_pred hhhhhhcceecCCCCcccc--CCCeeEEe--ccccEEEeCCCC----EEEEcchhHHhccCCC-CCHHHHHHHHHHHhhC
Confidence 4445567899998875332 24567776 889999999999 9999999999999999 8999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+..+..+++++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. +|| ++||+|
T Consensus 75 ~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~kla-r~~~~~~~~-~~r-----------~~ii~~ 140 (423)
T PRK05964 75 DHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMA-LQYWRNRGE-PGR-----------SRFLSL 140 (423)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------cEEEEE
Confidence 876544578999999999999999854 689999999999999999999 677666664 354 899999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||+|.+++++++...++.. | .+. ..++.++++|+. |
T Consensus 141 ~~~yHG~t~~~ls~~~~~~~~~~----~----~~~--------~~~~~~~~~~~~------------------------d 180 (423)
T PRK05964 141 RGGYHGDTIGTMSVGDRGGMHAL----Y----TPL--------LFEQVTAPFPPD------------------------G 180 (423)
T ss_pred cCCcCCccHHHHhcCCCcccccc----c----cCc--------CCCCEEeCCCcc------------------------h
Confidence 99999999999999875544321 1 000 012334455421 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
....+.+.+++.+.+ +++++||||+||++|+.+|++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 181 ---~~~~~~~~l~~~l~~-----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 181 ---YEQATLDALEALLEK-----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred ---hHHHHHHHHHHHHHh-----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 112235667777753 457899999999449999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|+.||++|+||+|+|||+|+|++++++++++.+........+.|++||++||++|++++++|++++++++.+++
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~ 332 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERV 332 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999998999999999999998863211234568999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
.++++++++.|. ++ .++|.+.++||.|+|+++++.++.. ......+.+.|+++||++.+.++.+||+||+
T Consensus 333 ~~~g~~l~~~l~----~l-~~~~~i~~vrg~Gl~~~i~l~~~~~-----~~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l 402 (423)
T PRK05964 333 AALSAGLAEGLE----PF-RDLPGVADVRVLGAIGAVELDRPVL-----ERDGPALRAFALERGVLLRPLGNTIYLMPPY 402 (423)
T ss_pred HHHHHHHHHHHH----hh-ccCCCeEEeecccEEEEEEeccCcc-----hhHHHHHHHHHHHCCeEEEecCCEEEEeCCc
Confidence 998888887553 33 4578888999999999999975420 1235678999999999999988999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
++|++|||+++++|+++++++
T Consensus 403 ~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 403 IITAEELDRITDAIVEVADEL 423 (423)
T ss_pred ccCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999764
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-67 Score=601.97 Aligned_cols=404 Identities=19% Similarity=0.217 Sum_probs=324.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.++...+||++|+++
T Consensus 22 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~ 94 (442)
T TIGR00709 22 PTAFAK--AQGCWVTDVEGK----EYLDFLAGAGTLALGH-NHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNI 94 (442)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEccccHhhhcCCC-CCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHh
Confidence 456666 889999999999 9999999999999999 899999999999998765543346789999999999999
Q ss_pred cCCC--CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 456 VGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 456 ~p~~--~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
+|.. ....+||+||||||||+|||+| |.| ||| ++||+++++|||+|.+++++++...++
T Consensus 95 ~p~~~~~~~~~f~~~sGsEA~e~AlklA-r~~-------tgr-----------~~Ii~~~~~yHG~t~~~~s~t~~~~~~ 155 (442)
T TIGR00709 95 IPKRKMDYKLQFPGPSGADAVEAAIKLA-KTY-------TGR-----------TNVISFSGGFHGMTIGALAVTGNLFAK 155 (442)
T ss_pred CCCcCCCccEEEeCCCHHHHHHHHHHHH-HHh-------cCC-----------CeEEEEcCCcCCchHHHHhhcCChhhh
Confidence 8742 1234677799999999999999 667 454 789999999999999999998855443
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.. +.+. .+++.++++|+.++ ++|+... +.....+.+.+++.++.+
T Consensus 156 ~~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~~~~--~~~~~~~~~~~~~~~~~~-- 200 (442)
T TIGR00709 156 NA--------VGML--------MPGVQFMPYPHEYR---------------CPFGIGG--EAGSNASIEYFENFIEDV-- 200 (442)
T ss_pred cc--------CCCC--------CCCcEEeCCCcccc---------------ccccCCc--hhHHHHHHHHHHHHHHhh--
Confidence 21 1111 12334556665442 1111111 111122233344444321
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
...++++||||+||+ ||.+|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+|+|
T Consensus 201 ~~~~~~iaavi~Epi-~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~ 279 (442)
T TIGR00709 201 ESGVDKPAAVILEAI-QGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGG 279 (442)
T ss_pred ccCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccC
Confidence 123568999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|+|+++++++ ++.+.. ..|++||++||++||||+|+|++++++++.+++.++++++.+.| .++.++
T Consensus 280 G-~Pigav~~~~~-~~~~~~------~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L----~~l~~~ 347 (442)
T TIGR00709 280 G-LPLAVLLIAPE-FDAWQP------AGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFL----DDMIKE 347 (442)
T ss_pred C-cccEEEEEchH-HhccCC------CcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 9 89999999998 565532 24889999999999999999999988888888888887777644 556678
Q ss_pred CCCeeEecccceEEEEEEccCCcCC------CCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~------~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+|.|++|||.|+|++++|.++.... ......+..+...|+++||++.+. ++++++.||+++|++|+|++++
T Consensus 348 ~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~ 427 (442)
T TIGR00709 348 HPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGIS 427 (442)
T ss_pred CCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999997642111 112235677889999999999875 5899999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|+++++++
T Consensus 428 ~l~~~l~~~ 436 (442)
T TIGR00709 428 RFKQAVEEA 436 (442)
T ss_pred HHHHHHHHH
Confidence 999999865
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=595.34 Aligned_cols=402 Identities=21% Similarity=0.259 Sum_probs=330.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+..+..+.+++..+|||+|++.
T Consensus 37 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~ 109 (441)
T PRK05769 37 PLVIER--GEGVWVEDVDGN----VYLDFNAGIAVTNVGH-AHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEI 109 (441)
T ss_pred CeeEEe--cceEEEEeCCCC----EEEECCCchhhcccCC-CCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHh
Confidence 566765 899999999999 9999999999999999 899999999999999887665556799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+++++|+|+||||||||+|||+| |.| +|| ++||+++++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~SGsEA~e~AlklA-r~~-------tgr-----------~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~ 170 (441)
T PRK05769 110 APGGFEKKVFFTNSGTESNEAAIKIA-RYH-------TGR-----------KYIIAFLGAFHGRTYGSLSLTASKPVQRK 170 (441)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHH-------hCC-----------CeEEEECCCcCCccHHHHHhcCCCccccc
Confidence 98544689999999999999999999 566 454 789999999999999999997642 2221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. .+++.++++|+.++ .+|+. ++.++..+.+.+.+++.+.+ ..
T Consensus 171 ~--------~~~~--------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~le~~~~~--~~ 216 (441)
T PRK05769 171 G--------FFPL--------MPGVIHVPYPNPYR---------------NPWGI-ENPEECGNAVLDFIEDYLFK--KL 216 (441)
T ss_pred C--------CCCC--------CCCeEEeCCCcccc---------------ccccC-CchHHHHHHHHHHHHHHHHh--hc
Confidence 1 1111 13556677775442 11110 11112223344556653321 01
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.||++||||+++||
T Consensus 217 ~~~~~iaavi~Epv-~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G 295 (441)
T PRK05769 217 VPPEEVAAIIVEPI-QGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG 295 (441)
T ss_pred cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+. ..|++||++||++|++++++|+++++ ++.++++++++++++.| .++..++
T Consensus 296 -~p~gav~~~~~i~~~~~-------~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L----~~l~~~~ 362 (441)
T PRK05769 296 -LPLGAVIGRAELMFLPP-------GSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKEL----KELKEKY 362 (441)
T ss_pred -cccEEEEEehhhhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 89999999999986542 24889999999999999999999988 88899998888888755 4556778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.++||.|+|++++|.++. .......+..+.+.|+++||++.+.+ +.+||.||+++|++|||+++++|+++++++
T Consensus 363 ~~~~~vrg~G~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 363 EFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred CCeeeeecceEEEEEEeccCC--ccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997643 11223456788999999999998876 899999999999999999999999998753
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=591.98 Aligned_cols=397 Identities=23% Similarity=0.271 Sum_probs=330.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.+|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++.+.....+.++...+|+|+|++.
T Consensus 23 p~~i~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~ 95 (425)
T PRK07495 23 QIYADR--AENAEIWDKEGR----RYIDFAAGIAVVNTGH-RHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNAL 95 (425)
T ss_pred CeeEEe--eeecEEEeCCCC----EEEEccccHHhhccCC-CCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHh
Confidence 566776 889999999999 9999999999999999 899999999999999887654456789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.++.++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++
T Consensus 96 ~p~~~~~~v~f~~SGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~~- 155 (425)
T PRK07495 96 VPGDFAKKTIFVTTGAEAVENAVKIA-RAA-------TGR-----------SAVIAFGGGFHGRTFMGMSLTGKVVPYK- 155 (425)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCCccHHHhhhcCCCcccc-
Confidence 98653479999999999999999999 566 454 789999999999999999998742 232
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
..++++ .+++.++++|+.++. .+ .+.+.+.+++.+++ .
T Consensus 156 -------~~~~~~--------~~~~~~~~~~~~~~g--------------------~~----~~~~~~~l~~~~~~---~ 193 (425)
T PRK07495 156 -------VGFGAM--------MPDVYHVPFPVELHG--------------------VS----VEQSLAALDKLFKA---D 193 (425)
T ss_pred -------cCCCCC--------CCCeEEecCCccccc--------------------cc----HHHHHHHHHHHHHh---c
Confidence 111211 134566777754310 00 11223455666642 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||+ |+++|++++|++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+||||+|+||
T Consensus 194 ~~~~~iaavi~EPv-~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G 272 (425)
T PRK07495 194 VDPQRVAAIIIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG 272 (425)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .+++||++||++||+++++|++++++++.++++++++++++.+ .++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 341 (425)
T PRK07495 273 -FPLAAVTGRAEIMDAPGPG------GLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRL----ASLRETV 341 (425)
T ss_pred -ccceEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 7999999999999988642 4789999999999999999999988888888888887777754 4556678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.+|||.|+|+++++.++... ......+..+.+.|+++||++.+. ++++||.||+++|++++|+++++|+++++
T Consensus 342 ~~i~~vrG~Gl~~~iel~~~~~~-~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~ 420 (425)
T PRK07495 342 PEIADIRGPGFMNAVEFNDADSG-LPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASIL 420 (425)
T ss_pred CCeeeeecCceEEEEEEecCCCC-CccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999764321 122335678899999999999764 48999999999999999999999999998
Q ss_pred HHH
Q 002941 852 EFD 854 (863)
Q Consensus 852 ~l~ 854 (863)
++.
T Consensus 421 ~~~ 423 (425)
T PRK07495 421 EAS 423 (425)
T ss_pred HHh
Confidence 765
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=545.94 Aligned_cols=381 Identities=23% Similarity=0.337 Sum_probs=320.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++.. ++|+++||.+|+ +|+||.|++..++-|| |||.|++|+++|++++..++ ..+.++...+++|.+.++
T Consensus 42 pvvf~k--a~g~~vwD~eGk----~ylDflsaysaVnqGh-chpki~~aLqeq~~kLtlss-rafYnd~~~~f~~~vt~l 113 (427)
T KOG1402|consen 42 PVVFSK--AKGSRVWDPEGK----EYLDFLSAYSAVNQGH-CHPKIIKALQEQADKLTLSS-RAFYNDVLGEFAEYVTKL 113 (427)
T ss_pred ceEEEe--cCCcEEECCCcc----chhhhhhhhhhcccCC-CCHHHHHHHHHHHhHhhhhh-HHHhhhhHHHHHHHHHHh
Confidence 345554 899999999999 9999999999999999 99999999999999987654 347889999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHH-HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKF-SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~-~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~ 533 (863)
+| .++|+-.|||.||+|+|+|+| |+| +..++-+. .+.+|++..++|||+|++++++++.+ .|
T Consensus 114 f~---~~kvlpmnTGaEa~Eta~KLa-R~wgy~~K~ip~-----------nka~il~~~~nFhGrT~~ais~s~d~ds~- 177 (427)
T KOG1402|consen 114 FG---YDKVLPMNTGAEAVETACKLA-RKWGYRKKNIPK-----------NKAKILSAENNFHGRTLGAISLSTDPDSW- 177 (427)
T ss_pred cC---cceeeecccchhHHHHHHHHH-HHHHHhhccCCc-----------cceeEEEecccccCceeeeEEecCCcchh-
Confidence 98 689999999999999999999 555 44444331 24789999999999999999998755 32
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.++++|. |.+ +..++ | +| +++++..|+
T Consensus 178 --------~~fgp~~--P~~-----~~~v~----------------Y----------~d--------~eale~~l~---- 204 (427)
T KOG1402|consen 178 --------DGFGPFL--PGV-----VDKVP----------------Y----------GD--------AEALEVALK---- 204 (427)
T ss_pred --------hccCCCC--CCc-----ceeec----------------c----------CC--------HHHHHHHhc----
Confidence 2345543 221 11111 1 23 356777775
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
...+||||+||| ||++|+++||++||+++|+||++|++++|+||||||+||||+++++++.+++||+|.|||+|+|
T Consensus 205 ---~~~vaaFivEPI-QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSG 280 (427)
T KOG1402|consen 205 ---SPNVAAFIVEPI-QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSG 280 (427)
T ss_pred ---CCCeeEEEeecc-ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccC
Confidence 378999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
|++|+|++++++++|..+... .|++||+|||++|++|+|+|++++++.+.++.. .|++.|..+|.++..+
T Consensus 281 G~~Pvsavl~~~~im~~~~pg------eHgsTyggNpLg~~vaiAalevi~eekL~era~----~lG~~l~~~L~~l~~~ 350 (427)
T KOG1402|consen 281 GVYPVSAVLADDDIMLNIKPG------EHGSTYGGNPLGCAVAIAALEVIVEEKLVERAA----KLGEILRDQLNKLQKK 350 (427)
T ss_pred CeeeeEEEEecHHHHhccCCC------ccccccCCChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcccc
Confidence 999999999999999997653 599999999999999999999998876655555 4555555566777778
Q ss_pred CCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 774 HRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 774 ~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.|. |.+|||+|++.+|++...+.+ ...+..++-.|.++|++..|. |+.+||.||++++++|+++.++++.+++.
T Consensus 351 ~p~~v~~VRGrGl~~ai~i~~~~~~----~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 351 FPHVVKEVRGRGLLNAIVINPSKTS----GQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred ccchhheeeccceEEEEEecccccc----chhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 874 789999999999999854311 134678888999999999986 68999999999999999999999988764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=559.52 Aligned_cols=400 Identities=30% Similarity=0.416 Sum_probs=319.9
Q ss_pred cccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCC
Q 002941 360 LFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE 439 (863)
Q Consensus 360 ~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~ 439 (863)
++|++.+.+...-...|.++++ |+|+.+||.||+ +|+|++++||++.+|| +||+|.+|+.+|+.+++|+.+..
T Consensus 23 ~i~~~~~~~~~t~a~~pv~~~~--gkg~kl~D~~g~----EyiD~~ssw~~~~~Gh-anpev~ral~~q~~k~~hs~~~~ 95 (433)
T KOG1401|consen 23 GIVEEKTRIVSTYARYPVVIES--GKGSKLFDPDGK----EYIDFTSSWAVTILGH-ANPEVARALAEQAKKLGHSSNGY 95 (433)
T ss_pred cccccceEEeeecCCCceeeec--ceeeeeecCCcc----eeeeeccceeccccCC-CCHHHHHHHHHHHhhheeccCcc
Confidence 4444444443222233577776 888999999999 9999999999999999 79999999999999999987654
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
++.+ +++|+++|.+..++++.++|||+||||||||+|||+| |+++ ..+.+++ +.+||+|+|||||+
T Consensus 96 ~t~e-av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~A-rk~~-~~~~~~~-----------~t~~Iaf~nsyHG~ 161 (433)
T KOG1401|consen 96 FTLE-AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFA-RKFT-GKKHPEK-----------KTKFIAFENSYHGR 161 (433)
T ss_pred ccHH-HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHH-HHhh-cccCCcc-----------ceeEEEEecCcCCc
Confidence 4455 9999999999998888999999999999999999999 4453 2222111 36899999999999
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
|+|+|++++++.|+-++ +|-. +++... .++|
T Consensus 162 tlgals~~~~s~y~~~~------------~p~~----p~v~~~--------------------------~ynd------- 192 (433)
T KOG1401|consen 162 TLGALSVTGNSKYGLPF------------DPIA----PDVVTA--------------------------EYND------- 192 (433)
T ss_pred chhHHHhhcccccCCCC------------CCCC----Cceeec--------------------------ccCC-------
Confidence 99999999888776322 1100 111111 1233
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
..++++.++. +.++|||||+||+ ||+||+++++++|+..|+.+|+++|++||+|||+|||||+|.+|++++++
T Consensus 193 -~t~l~k~~~~-----h~~~IaAVIvEPi-qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~ 265 (433)
T KOG1401|consen 193 -STALEKLFES-----HKGEIAAVIVEPI-QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFG 265 (433)
T ss_pred -HHHHHHHHHh-----CCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhC
Confidence 3567777763 6778999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH
Q 002941 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759 (863)
Q Consensus 680 v~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l 759 (863)
++|||.|++|.|||| +|+||+++++++++.+..+.. +.|++||+|||++|.++..+|+.+.+++++.++.+.++.|
T Consensus 266 ~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~~~---l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L 341 (433)
T KOG1401|consen 266 VTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGDH---LYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKEL 341 (433)
T ss_pred cCCcceeehhhccCC-ceeEEEeehHHHHhhcCCCCc---cccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999987543 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEec--C
Q 002941 760 RELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMC--G 831 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~p--p 831 (863)
++.| .+.+.+.+. +...+|+|+++++++..+. ..+....++.|++..+.+ ..+|+.| +
T Consensus 342 ~~~l----~e~~~~~~~~i~g~~grgl~ig~~~~~p~----------~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~ 407 (433)
T KOG1401|consen 342 RKLL----DEYLKKTPNSICGGVGRGLVIGFEFEGPV----------YKFADAAREQGLLILTLGKGLLEEGVRIAPIYL 407 (433)
T ss_pred HHHH----HHHhccCCCceeeeeeeEEEEEEEEeech----------hhhhhhhhhhhHHHHHHhcccccceEEEecccc
Confidence 8865 455666664 4444999999999997653 222333333333333221 3466666 3
Q ss_pred CCC--cHHHHHHHHHHHHHHHHHHH
Q 002941 832 PCS--SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 832 l~~--t~eeid~~v~~L~~~l~~l~ 854 (863)
+++ ++|.+++.++++.+.++++.
T Consensus 408 l~~~~~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 408 LTVEHTPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhc
Confidence 443 58999999999999888764
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=636.43 Aligned_cols=401 Identities=18% Similarity=0.199 Sum_probs=329.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||+ +|||+.+|+ .++|| +||+|++|+++|++++.+.+ .+.+++..+|||+|++.
T Consensus 607 p~~i~~--g~G~~l~D~dG~----~ylD~~~g~--~~lGH-~hp~v~~Ai~~q~~~l~~~~--~~~~~~~~~lAe~L~~~ 675 (1013)
T PRK06148 607 PIKFVR--GWGVWLIDNRGR----AYLDCFNNV--CHVGH-AHPRVVAAAARQAARLNTNT--RYLHDAIVAYAERLTAT 675 (1013)
T ss_pred CceEEE--eeecEEEECCCC----EEEEcccCh--hhcCC-CCHHHHHHHHHHHhhcCCcC--CcCCHHHHHHHHHHHHh
Confidence 567776 888999999999 999999984 77999 89999999999999974432 56799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ +++|+|+||||||||.|||+| |.| ||| ++||+|+++|||+|.+++++++.. ++.
T Consensus 676 ~p~~-~~~v~f~nSGsEA~e~AlklA-r~~-------tGr-----------~~ii~~~~~YHG~t~~a~s~s~~~-~~~- 733 (1013)
T PRK06148 676 LPDG-LTVAFFVNSGSEANSLALRLA-RAH-------TGQ-----------RDAIVLDHAYHGTTTELIDLSPYK-FNR- 733 (1013)
T ss_pred CCCC-cCEEEEeCCcHHHHHHHHHHH-HHh-------cCC-----------CeEEEEcCCccCCCcchhhcCchh-hcc-
Confidence 9864 689999999999999999999 667 565 789999999999999999998732 221
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
++ ++. ..+++.+++.|++|+ ++|.+ .+ .+....+.+.+++.++.+ ..
T Consensus 734 ---~~----~~~-------~~~~~~~~~~p~~~~--------~~~~~--------~~-~~~~~~~~~~l~~~i~~~--~~ 780 (1013)
T PRK06148 734 ---KG----GKG-------RPDHVEVAEVPDSYR--------GPERW--------PD-AEHGRRFAESVAEQIAAM--AA 780 (1013)
T ss_pred ---cC----CCC-------CCCCceEcCCCCccc--------cCCCC--------Ch-hhhHHHHHHHHHHHHHhh--hc
Confidence 11 110 012344556665442 11211 11 122334455566666431 22
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEeccccCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+ +|+++++|++|||+|+||+||||
T Consensus 781 ~~~~iAAvI~EPv-~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG 859 (1013)
T PRK06148 781 KGRGPAFFIAESI-PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNG 859 (1013)
T ss_pred cCCceEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCC
Confidence 4578999999998 999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..|++||+|||++|||++|+|++++++++.+++.++++++++.| .++.+++
T Consensus 860 -~Plgav~~~~ei~~~~~~g-----~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L----~~l~~~~ 929 (1013)
T PRK06148 860 -HPMGAVVTTREIADSFDNG-----MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGL----RELQDRF 929 (1013)
T ss_pred -cceEEEEEcHHHHhhccCC-----CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999999999988642 23789999999999999999999998888888888888887754 5667789
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.|++|||.|+|+++++..+..........+..+...|+++||++.+.| ++++|.||+++|+++||+++++|++++.
T Consensus 930 ~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~ 1009 (1013)
T PRK06148 930 DIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLA 1009 (1013)
T ss_pred CCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999986542222333457789999999999998754 8999999999999999999999999997
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 1010 ~~ 1011 (1013)
T PRK06148 1010 AA 1011 (1013)
T ss_pred HH
Confidence 65
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-64 Score=576.07 Aligned_cols=403 Identities=22% Similarity=0.231 Sum_probs=332.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+..+..+.+++..+||++|++.
T Consensus 24 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~ 96 (443)
T PRK08360 24 PLVPVK--AENAKVWDIEGN----EYIDFLSDAAVQNVGH-NNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEI 96 (443)
T ss_pred CceEEe--cceeEEEECCCC----EEEEccccHhhcccCC-CCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHh
Confidence 556766 899999999999 9999999999999999 899999999999999888765556689999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+ +++|+|+||||||||+|||+| |.| +|| ++||++.++|||+|.+++++++.. .++.
T Consensus 97 ~p~~-~~~v~f~~sGsEAve~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~a~s~~~~~~~~~~ 156 (443)
T PRK08360 97 APGD-NPKVSFGLSGSDANDGAIKFA-RAY-------TKR-----------RKILSYLRSYYGSTYGAMSLTGLDFPVRA 156 (443)
T ss_pred CCCC-CCEEEEcCCHHHHHHHHHHHH-HHh-------cCC-----------CeEEEEeCCcCCcCHHHHHhcCCCccccc
Confidence 9865 579999999999999999999 667 454 789999999999999999987632 1221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++ + +++.++++|+.++. .+.. +...+...+.+.+++.++. .
T Consensus 157 --------~~~~---~------~~~~~~~~~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~l~~---~ 199 (443)
T PRK08360 157 --------LVGE---L------SDVHYIPYPDCYRC---------------PFGK--EPGSCKMECVEYIKEKFEG---E 199 (443)
T ss_pred --------CCCC---C------CCcEEEeCCccccc---------------cccC--chhhhHHHHHHHHHHHHHh---c
Confidence 1111 1 24456777754421 1110 0011222234556666653 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++||||+||+ ||++|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|+.||++||||++++|
T Consensus 200 ~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G 278 (443)
T PRK08360 200 VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG 278 (443)
T ss_pred cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCC
Confidence 23578999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..|.+||++||++|++++++|++++++++.++++++++++++.| .++..++
T Consensus 279 -~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 347 (443)
T PRK08360 279 -LPISATIGRAEIMDSLPP------LAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRL----EEMKKKH 347 (443)
T ss_pred -ceeEEEEEcHHHHhhhcC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 899999999999998863 24789999999999999999999988888888888888887755 4556678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.+.+|||.|+|++++|.++..........+..+...|+++||++.+. ++++|+.||+++|++|||+++++|+++++++
T Consensus 348 ~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 348 ELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred CCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998643222222334678899999999999864 6999999999999999999999999999987
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
.
T Consensus 428 ~ 428 (443)
T PRK08360 428 E 428 (443)
T ss_pred H
Confidence 5
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-64 Score=575.46 Aligned_cols=394 Identities=22% Similarity=0.285 Sum_probs=326.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|+++
T Consensus 23 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK06777 23 DFYAER--AENATLWDVEGR----EYIDFAAGIAVLNTGH-RHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINAL 95 (421)
T ss_pred CeeEEe--eecCEEEeCCCC----EEEEcccCHHhhccCC-CCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHh
Confidence 456666 888999999999 9999999999999999 899999999999999887655456789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.+.+++++|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~s~t~~~~~~~- 155 (421)
T PRK06777 96 APIDGPAKTAFFTTGAEAVENAVKIA-RAY-------TGR-----------PGVIAFGGAFHGRTLLTMALTGKVAPYK- 155 (421)
T ss_pred CCCCCCceEEEeCCcHHHHHHHHHHH-HHh-------hCC-----------CeEEEEcCCcCCccHHHHhhcCCCcccc-
Confidence 87433579999999999999999999 666 454 789999999999999999998742 232
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
..++++ .+++.++++|+.++. . . ...+.+.+++.+++ .
T Consensus 156 -------~~~~~~--------~~~~~~~~~p~~~~~---------------------~--~-~~~~~~~l~~~~~~---~ 193 (421)
T PRK06777 156 -------VGFGPF--------PGSIFHALYPNELHG---------------------V--S-VEEALSSVERLFKA---D 193 (421)
T ss_pred -------cCCCCC--------CCCcEEcCCCccccC---------------------c--C-HHHHHHHHHHHHHh---c
Confidence 111221 123455666643210 0 0 11224556666642 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||+ ||++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++|+||+++||
T Consensus 194 ~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G 272 (421)
T PRK06777 194 IAPDQVAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG 272 (421)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .+++||++||++|++++++|++++++++.+++.++++++.+.| .++..++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 341 (421)
T PRK06777 273 -MPISAVVGRAEVMDAPAPG------GLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVL----EKAKASC 341 (421)
T ss_pred -CceEEEEEcHHHHhccCCC------CCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 8999999999999988642 4789999999999999999999988888888888888777755 4555678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.+|||.|+|+++++..+... ......+..+...|+++||++.|. ++.+||.||++++++++++++++|++++.
T Consensus 342 ~~i~~vrg~G~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 342 PAIVDIRARGSMVAVEFNDPQTG-KPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCeEEecCceEEEEEEEecCccC-CccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999754211 122345677888899999999885 47999999999999999999999998874
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=574.70 Aligned_cols=394 Identities=22% Similarity=0.270 Sum_probs=326.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
++++++ |+|+||||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|+++|+++
T Consensus 23 ~~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK09792 23 NFFAQS--AENATLKDVEGN----EYIDFAAGIAVLNTGH-RHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINAL 95 (421)
T ss_pred CeeEEe--ccccEEEeCCCC----EEEEccCchhhhcCCC-CCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHh
Confidence 456666 888999999999 9999999999999999 899999999999999887665556899999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++++|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~s~~~~~~~~~- 155 (421)
T PRK09792 96 APVSGQAKTAFFTTGAEAVENAVKIA-RAH-------TGR-----------PGVIAFSGGFHGRTYMTMALTGKVAPYK- 155 (421)
T ss_pred CCCCCCceEEEeCChHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCccHHHHhhcCCCcccc-
Confidence 87432479999999999999999999 566 464 789999999999999999998742 222
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++++. .++.++++|..++. .+ ...+.+.+++.+++ .
T Consensus 156 -------~~~~~~~--------~~~~~v~~p~~~~~--------------------~~----~~~~~~~l~~~~~~---~ 193 (421)
T PRK09792 156 -------IGFGPFP--------GSVYHVPYPSDLHG--------------------IS----TQDSLDAIERLFKS---D 193 (421)
T ss_pred -------cCCCCCC--------CCcEEcCCCccccc--------------------cc----HHHHHHHHHHHHHh---c
Confidence 2222211 23456677643210 00 11234566666653 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++||||+||+ |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+||||+|+||
T Consensus 194 ~~~~~iaavi~EPv-q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G 272 (421)
T PRK09792 194 IEAKQVAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG 272 (421)
T ss_pred cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC
Confidence 13578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... .+++||++||++|+|++++|++++++++.+++++.++++++.+ .++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l----~~l~~~~ 341 (421)
T PRK09792 273 -MPLSGVVGNANIMDAPAPG------GLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL----IDAKESV 341 (421)
T ss_pred -CceEEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999999999988642 4789999999999999999999988877888877777776644 5556778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.++||.|+|++++|.++.... ........+...|+++||++.+. ++.+||.||++++++||++++++|++++.
T Consensus 342 p~v~~vrG~Gl~~~ie~~~~~~~~-~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 342 PAIAAVRGLGSMIAAEFNDPQTGE-PSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred CCcceecccceEEEEEecCCccCC-cchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 989999999999999997543211 12235678999999999999754 48999999999999999999999999874
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=576.13 Aligned_cols=400 Identities=24% Similarity=0.289 Sum_probs=329.1
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhc
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~ 456 (863)
.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+.....+.+++..+|+++|++++
T Consensus 27 ~~~~~--~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~ 99 (433)
T PRK08117 27 LPVVK--GEGCYYYGVDGK----EYLDFTSGIAVANVGH-RHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEIT 99 (433)
T ss_pred ceEEe--eeeeEEEeCCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC
Confidence 56766 788999999999 9999999999999999 8999999999999998876544567899999999999999
Q ss_pred CCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCC-CCCCCC
Q 002941 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGF 535 (863)
Q Consensus 457 p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~-~~~~~~ 535 (863)
|++ .++|+|+||||||||+|||+| |.| +|| ++||+++++|||+|.+++++++. ..++..
T Consensus 100 ~~~-~~~v~f~~SGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~ 159 (433)
T PRK08117 100 PGG-LDCFFFSNSGAEAIEGALKLA-KHV-------TKR-----------PYIISFTGCFHGRTLGALSVTTSKSKYRKY 159 (433)
T ss_pred CCC-CCEEEEeCcHHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCcCHHHHhhcCCCcccccc
Confidence 654 689999999999999999999 566 454 78999999999999999998763 323211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.+. .+++.++++|++++.. ... +.......+.+.+++.+++. .
T Consensus 160 --------~~~~--------~~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~l~~~~~~~---~ 203 (433)
T PRK08117 160 --------YQPL--------LGSVYQAPYPYCDRCP---------------KGE--DPEVCFLECLRDLESLFKHQ---V 203 (433)
T ss_pred --------CCCC--------CCCcEEeCCCcccccc---------------ccC--chhHHHHHHHHHHHHHHHhc---c
Confidence 1111 1345667777544210 000 00112222345666666531 2
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++||||+||| ||++|+++|+++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||+|+||
T Consensus 204 ~~~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G- 281 (433)
T PRK08117 204 TPEEVAAVIIEPV-LGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG- 281 (433)
T ss_pred CCCcEEEEEECCe-eCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC-
Confidence 3568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+++||++||++|+|++++|+++++++++++++++++++++.+ .++..+++
T Consensus 282 ~pigav~~~~~i~~~~~~------~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~ 351 (433)
T PRK08117 282 LPLSAVVASKELMEQWPL------GSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERL----EVLKEKHP 351 (433)
T ss_pred CcceeEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhcCC
Confidence 899999999999998753 24889999999999999999999987788888888887777654 44556788
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.++||.|+|++++|.++. . .........+.+.|+++||++.+.+ +.+|+.||+++|+++|++++++|++++++
T Consensus 352 ~~~~vrg~Gl~~gi~~~~~~-~-~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 352 VIGDVRGIGLMIGIEIVDPD-G-EPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred ceeeeecCCcEEEEEEecCC-C-CcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998653 1 1122356778899999999997653 89999999999999999999999999876
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 430 ~ 430 (433)
T PRK08117 430 Y 430 (433)
T ss_pred H
Confidence 5
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-64 Score=573.93 Aligned_cols=418 Identities=27% Similarity=0.424 Sum_probs=338.6
Q ss_pred hhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc
Q 002941 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (863)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~ 433 (863)
.+.+.+++|+||+.... ..++..+++ ++|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--a~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~ 78 (427)
T TIGR00508 8 LAFDQRHIWHPYTSMSS--PLPVYPVES--ADGVELTLDDGR----RLIDGMSSWWAAIHGY-NHPRLNAAAQKQIDKMS 78 (427)
T ss_pred HhccccccccCccCccc--cCCCceEEe--eeeeEEEeCCCC----EEEEccchHHHhcCCC-CCHHHHHHHHHHHHhcC
Confidence 33455678888876521 123455665 788999999999 9999999999999999 89999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEec
Q 002941 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (863)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~ 513 (863)
+..+..++++...+|+++|++.+|.+ +++|+|++|||||||.|+|+| |.|+..+|. +| |.+||+|.
T Consensus 79 ~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~~~-~~-----------r~~il~~~ 144 (427)
T TIGR00508 79 HVMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMA-LQYWQAKGE-KN-----------RQKFLTIR 144 (427)
T ss_pred CccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC-CC-----------ccEEEEEc
Confidence 76655568999999999999999865 689999999999999999999 567655444 24 37899999
Q ss_pred CCCccCccccceecCCCC-CCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 514 GSYHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 514 ~sYHG~t~gals~t~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
++|||+|.+++++++... ++. .|. +. . ++..+++.|... | .
T Consensus 145 ~~yHG~t~~~~s~~~~~~~~~~----~~~----~~--~------~~~~~~~~p~~~-----------~-------~---- 186 (427)
T TIGR00508 145 SGYHGDTFGAMSVCDPENSMHS----LYK----GY--L------PEQIFAPAPQNR-----------F-------D---- 186 (427)
T ss_pred CCcCCccHhhhcccCCcccccc----ccc----cc--C------CCCeEcCCCCcc-----------c-------c----
Confidence 999999999999987432 211 110 00 0 112233333211 0 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
........+.+++.+++ .++++||||+|||+|+.||+++++++||++|+++|++||++||+|||||||||+|++
T Consensus 187 -~~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~ 260 (427)
T TIGR00508 187 -EEWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKL 260 (427)
T ss_pred -chhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcc
Confidence 01111223556666653 346899999999659999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|+.|||+|+||+|+|||+|++++++++++++.+.... ...+.|++||++||++||+++++|++++++++.+++
T Consensus 261 ~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~ 339 (427)
T TIGR00508 261 FACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGE-AGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQV 339 (427)
T ss_pred chhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999889999999999999987421 123458899999999999999999999888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
+++++++++.|+ ++ ..++.+.++||.|+|+++++.++. .+..+.+.|+++||++.+.++.+++.||+
T Consensus 340 ~~~~~~l~~~L~----~l-~~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~~~Gv~~~~~~~~l~~~ppl 406 (427)
T TIGR00508 340 SAIENQLKRELS----PL-RKNPVVKDVRVLGAIGVVEMYKPV--------NVEELQKKFVEQGVWIRPFGKLIYVMPPY 406 (427)
T ss_pred HHHHHHHHHHHH----Hh-hcCCCEEeEeccccEEEEEECCcc--------CHHHHHHHHHHCCeEEEecCCEEEEECCC
Confidence 998888888653 33 456778899999999999997532 24678999999999999988999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~ 852 (863)
++|++|||+++++|++++++
T Consensus 407 ~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 407 IITTEQLQKLTAALIEALHE 426 (427)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=571.96 Aligned_cols=400 Identities=23% Similarity=0.258 Sum_probs=327.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+||++|+++
T Consensus 16 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 88 (420)
T TIGR00700 16 PVFAAR--AEGAILEDVDGN----RLIDFASGIAVLNIGH-SHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRI 88 (420)
T ss_pred CeeEEe--eeeeEEEeCCCC----EEEECccCHHhccCCC-CCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHh
Confidence 566766 889999999999 9999999999999999 899999999999999887654446789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++|+|+||||||||+|||+| |.| +|| ++||+|.++|||+|.+++++++.. .++
T Consensus 89 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~~- 148 (420)
T TIGR00700 89 APGSGPKKSVFFNSGAEAVENAVKIA-RSY-------TGR-----------PGVVAFDHGFHGRTNMTMALTAKVMPYK- 148 (420)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHh-------cCC-----------CcEEEECCCcCCCcHHHHHhcCCCcccc-
Confidence 97533579999999999999999999 667 454 789999999999999999998742 122
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++++ + +++.++++|++++.. ... .+ ... ..+.+.+++.+.. .
T Consensus 149 -------~~~~~~--~------~~~~~~~~~~~~~~~---------------~~~-~~-~~~-~~~~~~~~~~~~~---~ 192 (420)
T TIGR00700 149 -------SGFGPF--A------PEVYRAPLPYPYRDG---------------LLD-KQ-LST-DGELAAARAIFVI---D 192 (420)
T ss_pred -------cCCCCC--C------CCcEEeCCCcccccc---------------ccc-cc-hhH-HHHHHHHHHHHHh---h
Confidence 222222 1 234556777554210 000 00 011 1234456655531 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||| ||++|+++++++|+++|+++|++||++||+|||+|||||+|++|+++++|+.||++||||++++|
T Consensus 193 ~~~~~iAavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G 271 (420)
T TIGR00700 193 VGANNVAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADG 271 (420)
T ss_pred cCCCcEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCC
Confidence 34679999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|++++|+|++++++++.+++.+.++++++.+ .++.+++
T Consensus 272 -~pig~v~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~~ 340 (420)
T TIGR00700 272 -LPLSGVTGRAEIMDAPAP------GGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRL----TTLKAVD 340 (420)
T ss_pred -cceEEEEecHHHHhhcCC------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998754 24789999999999999999999988888888887777776644 5556678
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+.++||.|+|+++++.++.. .......+..+.+.|+++||++.|. ++.+||.||+++++++|++++++|+++++
T Consensus 341 ~~~~~vrg~G~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 341 PRIGDVRGLGAMIAVELVDPGT-TEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CCEEEeeccceEEEEEEecCCC-CCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 8899999999999999974321 1123345678888999999999885 48999999999999999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=575.63 Aligned_cols=405 Identities=22% Similarity=0.300 Sum_probs=329.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||| +|||+.+|+|++++|| +||+|++|+++|++++.+..+..+.+++..+|||+|+++
T Consensus 37 ~~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 109 (451)
T PRK06918 37 PTFAQS--ANGALVTDVDGN----QYIDFAGAIGTINVGH-SHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAAL 109 (451)
T ss_pred CceEEe--ccccEEEeCCCC----EEEEcCCchhhcCCCC-CCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHh
Confidence 456666 899999999999 9999999999999999 899999999999999887654456799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|.++.++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 110 APGSFDKKVLFLNSGAEAVENAVKIA-RKY-------TKR-----------QGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred CCCCCCCEEEEcCCcHHHHHHHHHHH-HHH-------hCC-----------CcEEEECCCcCccchhhhhhcCCCccccc
Confidence 98653369999999999999999999 667 454 789999999999999999998742 2321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.++++ .+++.++|+|++++.. .+. ......+.+.+.+++.++. .
T Consensus 171 --------~~~~~--------~~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~~~~---~ 214 (451)
T PRK06918 171 --------GFGPF--------APEVYKAPFPYEYRRP---------------EGL--TEEQYDDFMIEEFKNFFIS---E 214 (451)
T ss_pred --------cCCCC--------CCCcEEcCCCcccccc---------------ccC--chHHHHHHHHHHHHHHHHh---h
Confidence 11211 1244566777544210 000 0012333344555555532 1
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||||+||+ ||.||+++|+++|+++|+++|++||++||+|||+|||||+|++|+++++++.||+++|||++++|
T Consensus 215 ~~~~~iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G 293 (451)
T PRK06918 215 VAPETIAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG 293 (451)
T ss_pred cCCCceEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.+++.+.++++.+.+ .++.+++
T Consensus 294 -~pig~v~~~~~i~~~~~~------~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l----~~l~~~~ 362 (451)
T PRK06918 294 -VPISGVIGRKEIMDESAP------GELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRF----EEMKNKY 362 (451)
T ss_pred -CccEEEEEcHHHHhccCC------CCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998753 24789999999999999999999988878888877777766644 4555578
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.++||.|+|+++++..+..........+..+.+.|+++||++.+.+ +.+||.||+++++++||+++++|++++.
T Consensus 363 ~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~ 442 (451)
T PRK06918 363 NCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQ 442 (451)
T ss_pred CCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 8889999999999999964321111233457788899999999998864 8999999999999999999999999998
Q ss_pred HHH
Q 002941 852 EFD 854 (863)
Q Consensus 852 ~l~ 854 (863)
++.
T Consensus 443 ~~~ 445 (451)
T PRK06918 443 ACY 445 (451)
T ss_pred HHH
Confidence 764
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=573.46 Aligned_cols=400 Identities=18% Similarity=0.221 Sum_probs=312.1
Q ss_pred EEeecccceEEEEc-CCCcccceEEeeecccccccCCCCCcHHHHH--HHHHHHHhccc--ccCCCCCChHHHHHHHHHH
Q 002941 379 IDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELAR--DMGYTAARFGH--VMFPENVYEPALECAELLL 453 (863)
Q Consensus 379 i~~~~G~G~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~--Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~ 453 (863)
+++ |+|+|+||. ||+ +|||+++|+|++++|| +||+|++ |+++|++++.+ .....+.+++..+|+++|+
T Consensus 30 i~~--a~G~~l~D~~dG~----~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~ 102 (443)
T PRK08297 30 LER--SQGSYLVDARTGR----RYLDMFTFFASSALGM-NHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFA 102 (443)
T ss_pred EEe--ccCCEEEECCCCC----EeeecccCHhhhcCCC-CChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHH
Confidence 444 899999995 999 9999999999999999 8999999 99999998763 2223567899999999999
Q ss_pred hhc-CCCCCCeEEEeCChhhHHHHHHHHHHHHHHhh----cccc-ccccCCCccccccccEEEEecCCCccCccccceec
Q 002941 454 QGV-GKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVL-VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527 (863)
Q Consensus 454 ~~~-p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~----~G~~-tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t 527 (863)
+++ |.+ +++|+|+||||||||+|||+| |+|+.+ +|.+ ++ |++||+|+++|||+|.++++++
T Consensus 103 ~~~~p~~-~~~v~f~~SGsEAve~AlKlA-r~~~~~~~~~~g~~~~~-----------r~kii~~~~~yHG~t~~als~~ 169 (443)
T PRK08297 103 RVLGDPE-LPHLFFVDGGALAVENALKVA-FDWKSRKNEARGIDPAL-----------GTKVLHLRGAFHGRSGYTLSLT 169 (443)
T ss_pred hhcCCCC-CCEEEEeCchHHHHHHHHHHH-HHHhhccccccCCCCCC-----------CceEEEECCCcCCcchhhhhhc
Confidence 988 443 689999999999999999999 667532 2321 12 3899999999999999999998
Q ss_pred CCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHH
Q 002941 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607 (863)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~ 607 (863)
+...++.. ++ +..+.+ +++.|+.. |++... ...+...+...+.+.+++.
T Consensus 170 ~~~~~~~~----~~----~~~~~~---------~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~ 218 (443)
T PRK08297 170 NTDPRKTA----RF----PKFDWP---------RIDNPKLR-----------FPLPGE---DLEEVEALEAEALAQARAA 218 (443)
T ss_pred CCcccccc----cC----CCCCcc---------ccCCCCCC-----------CCCccc---ccchhhHHHHHHHHHHHHH
Confidence 75332210 00 000000 11222110 000000 0001112223345666777
Q ss_pred HhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe
Q 002941 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY 687 (863)
Q Consensus 608 l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~ 687 (863)
+++ +++++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|++|||+||
T Consensus 219 i~~-----~~~~iAavI~EPi-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~ 292 (443)
T PRK08297 219 FER-----HPHDIACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAF 292 (443)
T ss_pred HHh-----CCCcEEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEe
Confidence 753 5689999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 688 GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 688 sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
||++ |++++++++++.+.....-. ....|++||++||++|++++++|++++++++.+++.++++++++.|
T Consensus 293 gK~l-----~~~a~l~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L---- 362 (443)
T PRK08297 293 GKKT-----QVCGIMAGRRVDEVEDNVFA-VSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARL---- 362 (443)
T ss_pred cccc-----cccceecchHHHHhhhhhcc-CccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----
Confidence 9997 45667777776554321000 0124889999999999999999999988888888888888887754
Q ss_pred HHHHhcCCCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHH
Q 002941 768 IQQISSHRTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 768 ~~~~~~~p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.++.+++|.+. +|||.|+|+++++.+. .....+++.|+++||++.|.+ +.+||+||+++|++|||+++++
T Consensus 363 ~~l~~~~~~~~~~vrg~G~~~~i~~~~~--------~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~ 434 (443)
T PRK08297 363 EELAAEFPAVVSNVRGRGLMCAFDLPTT--------ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDA 434 (443)
T ss_pred HHHHHHCCCcceeeeccceEEEEEecCH--------HHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHH
Confidence 45566788665 9999999999999643 245678999999999999876 7999999999999999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
|+++++++
T Consensus 435 l~~~l~~~ 442 (443)
T PRK08297 435 LRRALPEV 442 (443)
T ss_pred HHHHHHhh
Confidence 99998765
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=567.07 Aligned_cols=382 Identities=23% Similarity=0.318 Sum_probs=323.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+... .+.+++..+|+|+|++.
T Consensus 23 ~~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~~ 94 (408)
T PRK04612 23 QVVLER--GQGSRVWDDQGR----EYLDLAAGIAVCGLGH-NDPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVTA 94 (408)
T ss_pred CceEEE--eeeCEEEECCCC----EEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhh
Confidence 456666 788999999999 9999999999999999 899999999999999877643 46789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|. .++|+|++|||||||+|||+| |+|+..+|++++ |++||+|+++|||+|++++++++.+.++..
T Consensus 95 ~~~--~~~v~f~~sGseA~e~AlklA-r~~~~~~g~~~~-----------r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 160 (408)
T PRK04612 95 SRF--AEKVFLCNSGTEANEAAIKLV-RKWASSQGRPAD-----------KRVIVTFRGSFHGRTLAAVTATAQPKYQEG 160 (408)
T ss_pred CCC--CCEEEEcCchHHHHHHHHHHH-HHHHHhhCCCCC-----------CcEEEEECCCcCCccHHHHHhcCCcccccC
Confidence 874 479999999999999999999 678765554323 378999999999999999999886655421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.+. | +++.++++| | .+.+++.++
T Consensus 161 --------~~~~---~-----~~~~~~~~~--------------------------d--------~~~l~~~~~------ 184 (408)
T PRK04612 161 --------YEPL---P-----GGFRYVDFN--------------------------D--------VEALEAAMA------ 184 (408)
T ss_pred --------CCCC---C-----CCceEcCCC--------------------------C--------HHHHHHhhC------
Confidence 1111 0 122223322 1 133444442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++|||+||+ |+.||+++++++|+++|+++|++||++||+|||+|||||+|.+|+++++++.||++||||+++||
T Consensus 185 -~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G- 261 (408)
T PRK04612 185 -GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG- 261 (408)
T ss_pred -CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCC-
Confidence 468999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+++||++||++|++++++|++++++++.+++.++++++++.| .++.++++
T Consensus 262 ~piga~~~~~~~~~~~~~~------~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l----~~l~~~~~ 331 (408)
T PRK04612 262 FPIGAMLAGPKVAETMQFG------AHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGL----EALNAEFG 331 (408)
T ss_pred CceEEEEECHHHHhhhcCC------CcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999998887642 4789999999999999999999988888888888888887754 45667789
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.++||.|+|+++++..+. ...+..+.+.|+++||++.+.| +.+|+.||+.+|++|||+++++|++++.++.
T Consensus 332 ~i~~vrg~Gl~~~i~~~~~~------~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 332 VFAQVRGRGLMLGAVLAPAH------AGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred CeeeeeccceEEEEEecCch------hhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999997431 1246678899999999999887 9999999999999999999999999998754
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-64 Score=560.33 Aligned_cols=354 Identities=21% Similarity=0.274 Sum_probs=300.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+.. ..+.+++..+|+++|+++
T Consensus 7 ~~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~la~~l~~~ 78 (364)
T PRK04013 7 RLRLVR--GEGIYVWDSQGR----RYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEKLVVAG-PMFEHEEKEEMLEELSKW 78 (364)
T ss_pred CccEEE--eecCEEEECCCC----EEEEcccChhhccCCC-CCHHHHHHHHHHHHhcCCcc-CCcCCHHHHHHHHHHHhh
Confidence 446666 788999999999 9999999999999999 89999999999999987764 357899999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++ .++++|+||||||||.|||+| |.| +|| ++||+++++|||+|.+++++++.+.++..
T Consensus 79 ~~---~~~v~~~~SGseA~e~Alkla-r~~-------~gr-----------~~Ii~~~~syHG~t~~~ls~~~~~~~~~~ 136 (364)
T PRK04013 79 VN---YEYVYMGNSGTEAVEAALKFA-RLY-------TGR-----------KEIIAMTNAFHGRTMGALSATWKPKYRED 136 (364)
T ss_pred cC---CCEEEEeCchHHHHHHHHHHH-HHH-------hCC-----------CEEEEECCccccCchhhccCCCCcccccC
Confidence 85 579999999999999999999 566 354 78999999999999999999886655431
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.+.. .++.++++| | .+.+++.+.
T Consensus 137 --------~~p~~--------~~~~~~~~~--------------------------d--------~~~l~~~i~------ 160 (364)
T PRK04013 137 --------FEPLV--------PGFKHIPFN--------------------------D--------VEAAKEAIT------ 160 (364)
T ss_pred --------CCCCC--------CCcEEecCC--------------------------C--------HHHHHHHhc------
Confidence 11111 122233332 1 123444442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++||||+||+ ||+||++++|++||++|+++|++||++||+|||+||| |+|++|+++++|+.|||+|+||+|+||
T Consensus 161 --~~~aAvivEpi-~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lggG- 235 (364)
T PRK04013 161 --KETAAVIFEPI-QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNG- 235 (364)
T ss_pred --CCcEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccCC-
Confidence 47999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|+++.++++. . ..|++||++||++|||++|+|++++++++.+++.+. + .++ ..+
T Consensus 236 ~P~~a~~~~~~~~----~------~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l----~~l--~~~ 292 (364)
T PRK04013 236 VPVSLTLTNFDVE----R------GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------F----IEI--KGE 292 (364)
T ss_pred ceeEEEEeccccc----C------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------H----HHh--ccC
Confidence 8999999988761 1 248899999999999999999999988887776553 1 111 237
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.|++|||.|+|+++|+..+ +..+.+.|+++||++.+.| +++||.||+++|++|+|+++++|+++++++
T Consensus 293 ~v~~vRG~Gl~~gve~~~~----------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 293 RVVTTRGRGLMIGIVLKKP----------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred cceeeeeCcEEEEEEeCCc----------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999642 4568899999999999877 899999999999999999999999999764
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-64 Score=573.27 Aligned_cols=400 Identities=18% Similarity=0.174 Sum_probs=307.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH--HHhcccccCCCCCChHHHHHHHHHH
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT--AARFGHVMFPENVYEPALECAELLL 453 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q--~~~~~~~~~~~~~~~~~~eLae~L~ 453 (863)
|+.+++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++| ..++.+.. .+.+++..+|+++|+
T Consensus 41 p~~~~~--a~G~~l~D~dG~----~ylD~~sg~~~~~lGh-~~p~i~~Ai~~q~~~~~l~~~~--~~~~~~~~~la~~l~ 111 (464)
T TIGR00699 41 LADYEK--SRGNYLVDVDGN----RLLDLYSQISSIPIGY-NNPALLKAAQSPEMATTLINRP--ALGNFPSKDWAKILK 111 (464)
T ss_pred ceEEEe--cccCEEEeCCCC----EEEEccCCHhhhcCCC-CCHHHHHHHHHHHHHHhhcccc--cCCcHHHHHHHHHHH
Confidence 455665 889999999999 9999999999999999 899999999995 44554432 467888999999985
Q ss_pred h----hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccc-----ccccCCCc-----cccccccEEEEecCCCccC
Q 002941 454 Q----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL-----VDFLGKDT-----TEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 454 ~----~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~-----tgr~~~~~-----~~~~~r~~II~~~~sYHG~ 519 (863)
+ ++|.+ +++|+|+||||||||+|||+| |.|+..+|+. |||. ++. .....|.+||+|+++|||+
T Consensus 112 ~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlA-r~~~~~~~r~~~~~~t~~~-~~~~~~~~~~g~~r~~ii~~~~syHG~ 188 (464)
T TIGR00699 112 EGILKVAPKG-QDQVWTGMSGSDANELAFKAA-FMYYRSKQRGYQADFSEEE-NESCMDNQAPGSPDLSILSFKGAFHGR 188 (464)
T ss_pred HhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCCccccccccc-ccccccccccCCcCCEEEEECCCcCCc
Confidence 4 67754 689999999999999999999 5676543321 1210 000 0000135899999999999
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhc-ccCchhHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE-ERDSSDLAS 598 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~ 598 (863)
|.+++++++.+.++.. .+|. .++.++|+|+ ++ +++.. ..+......
T Consensus 189 t~~als~t~~~~~~~~-------------~~~~----~~~~~~p~p~-~~---------------~~~~~~~~~~~~~~~ 235 (464)
T TIGR00699 189 LFGSLSTTRSKPIHKL-------------DIPA----FDWPQAPFPS-LK---------------YPLEEHVKENAKEEQ 235 (464)
T ss_pred cHHHHHhcCCcccccc-------------CCCC----CCceecCCCC-cc---------------cccccccccchhHHH
Confidence 9999999875433211 0111 1223455553 10 00000 000012223
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+.+++.|++ ++++|||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||.+|+++++
T Consensus 236 ~~l~~l~~~l~~-----~~~~iAAvI~EPv-~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~ 309 (464)
T TIGR00699 236 RCLEEVEDLIKK-----WHKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHW 309 (464)
T ss_pred HHHHHHHHHHHh-----cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhc
Confidence 345667777753 3567999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCV--PDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~--PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
|+. |||+|+||+|+ ||| + +.+ +. +... ..+.|++||++||++||+++|+|++++++++.+++.++
T Consensus 310 gv~~~PDi~t~gK~lg~gG~-~----~~~-~~---~~~~---~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~ 377 (464)
T TIGR00699 310 NLDDPPDMVTFSKKFQTAGY-F----FHD-PA---FRPN---KPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHV 377 (464)
T ss_pred CCCCCCCEEEehhhhccCCc-c----ccc-hh---ccCC---CCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 997 99999999995 685 2 222 22 2211 12468999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecC
Q 002941 756 RRILRELWDLELIQQISSHR-TVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCG 831 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p-~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~pp 831 (863)
++++++.| .++.+++| .|++|| |.|+|+++++.+. ..+..+.+.|+++||++.+.| +.+||.||
T Consensus 378 g~~l~~~L----~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--------~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Pp 445 (464)
T TIGR00699 378 GDYLYTGL----EDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--------AKRDKLLKKARNNGVNIGGCGVKAIRLRPM 445 (464)
T ss_pred HHHHHHHH----HHHHHhCCCceeeecccCeEEEEEEecCCH--------HHHHHHHHHHHHCCcEEecCCCCeEEEeCC
Confidence 88887754 45566789 799999 9999999998532 246789999999999999877 89999999
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l 850 (863)
+++|++|||+++++|++++
T Consensus 446 l~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 446 LVFQKHHADIFLEIISKII 464 (464)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999998864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=569.59 Aligned_cols=385 Identities=17% Similarity=0.243 Sum_probs=312.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.+. .+.+++..+|+++|++.
T Consensus 36 p~~~~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~~ 105 (428)
T PRK12389 36 PVVMER--GKGAYFYDVDGN----KYIDYLAAYGPIITGH-AHPHITKAITEAAENGVLY---GTPTELEIEFAKMLKEA 105 (428)
T ss_pred CeEEEe--ccCCEEEeCCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHHh
Confidence 566666 889999999999 9999999999999999 8999999999999987653 46789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|. +++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...++..
T Consensus 106 ~p~--~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 164 (428)
T PRK12389 106 IPS--LEKVRFVNSGTEAVMTTIRVA-RAY-------TGR-----------TKIIKFAGCYHGHSDLVLVAAGSGPSTLG 164 (428)
T ss_pred CCC--CcEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCChHHHHHhcCCcccccC
Confidence 873 689999999999999999999 667 454 78999999999999999999874432210
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+...+ +..+ . .+.+.+++++ | .+.+++.+++
T Consensus 165 --~~~~~~---~~~~-~---~~~~~~~~~~--------------------------d--------~~~l~~~l~~----- 196 (428)
T PRK12389 165 --TPDSAG---VPKS-I---AQEVITVPFN--------------------------D--------IEALKEALDK----- 196 (428)
T ss_pred --CCCCCC---CCCc-c---cCceEEcCCC--------------------------C--------HHHHHHHHHh-----
Confidence 000000 0000 0 0112222221 2 1345566643
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||||+||| ||++|+++||++||++|+++|++||++||+|||+||| |+|.+|+++++|++|||+|+||+|+||
T Consensus 197 ~~~~vaavi~EPv-~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG- 273 (428)
T PRK12389 197 WGDEVAAVLVEPI-VGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG- 273 (428)
T ss_pred cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC-
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... ...|++||++||++|||++|+|+++++++++++++++++++++.| .++.+++|
T Consensus 274 ~Pi~av~~~~~i~~~~~~~~---~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~ 346 (428)
T PRK12389 274 LPIGAYGGRKDIMEQVAPLG---PAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGI----LEAAEKHG 346 (428)
T ss_pred CceeEEeEHHHHHhhhccCC---CcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 89999999999999986321 246889999999999999999999988888899888888888755 45566788
Q ss_pred CeeEe-cccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 776 TVQRV-VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 776 ~v~~v-rg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.++ |+.| |+++++.++... ...+...+..+...|+++||++.+.+ +. +.||+++|++|||++++++++
T Consensus 347 ~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--~~~~l~~t~e~id~~~~~l~~ 423 (428)
T PRK12389 347 ITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEA--WFLTTAHTEEDIEETLEAVDR 423 (428)
T ss_pred CCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCC--eeecCCCCHHHHHHHHHHHHH
Confidence 87777 7888 888999754311 01122346788999999999998865 33 358999999999999999999
Q ss_pred HHHH
Q 002941 849 RLEE 852 (863)
Q Consensus 849 ~l~~ 852 (863)
++++
T Consensus 424 ~l~~ 427 (428)
T PRK12389 424 AFAQ 427 (428)
T ss_pred HHHh
Confidence 9865
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=567.07 Aligned_cols=386 Identities=22% Similarity=0.288 Sum_probs=314.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|+++..+.....+.+++..+|+|+|++.
T Consensus 18 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~ 90 (412)
T TIGR02407 18 PTVFEK--AKGSTLWDEDGK----EYIDFFAGAGALNYGH-NNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEI 90 (412)
T ss_pred CceEEe--cccCEEEeCCCC----EEEEcccchhhccCCC-CCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHh
Confidence 456666 889999999999 9999999999999999 899999999999998766554445789999999999997
Q ss_pred c--CCCCCCeEEE-eCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 456 V--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 456 ~--p~~~~~~v~f-~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+ |.+...+++| +||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++++...+
T Consensus 91 ~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~als~~~~~~~ 151 (412)
T TIGR02407 91 ILKPRGLDYKVQFPGPTGTNAVESALKLA-RKV-------TGR-----------SNVVSFTNAFHGMTLGSLSVTGNRFK 151 (412)
T ss_pred ccCccCCCceEEEeCCCchHHHHHHHHHH-hhh-------cCC-----------CeEEEECCCcCCchHHHHHhcCCccc
Confidence 5 4322235655 599999999999999 566 454 78999999999999999999886544
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+.. ++ ++. .++.++|+|+.. .+ ...+.+.+++.+++.
T Consensus 152 ~~~--------~~----~~~----~~~~~~p~~~~~----------------------~~----~~~~~~~l~~~~~~~- 188 (412)
T TIGR02407 152 RQG--------AG----VPL----SNVSRMPYDGYL----------------------GG----DVDTIAYFEKLLEDS- 188 (412)
T ss_pred ccC--------CC----CCC----CCeEECCCCCcc----------------------cc----chhHHHHHHHHHHhc-
Confidence 321 11 111 133445555311 00 011234566666531
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
..+.+++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||++|+++++++.||++|+||+|+
T Consensus 189 -~~~~~~~aavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg 266 (412)
T TIGR02407 189 -SSGVDLPAAVILETV-QGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSIS 266 (412)
T ss_pred -cCCCCceEEEEeccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhcc
Confidence 112367999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHH-hcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 G-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 g-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
| | +|+|++++++++ +.+.. ..|++||++||++|+++.++|++ ++++++.+++.+.++++++.+ .++
T Consensus 267 ~~G-~pigav~~~~~~-~~~~~------~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l----~~l 334 (412)
T TIGR02407 267 GYG-LPLALTLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERL----DRI 334 (412)
T ss_pred CCc-cceeEEEEchhh-hccCC------CccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHH
Confidence 8 8 899999999987 55532 25889999999999999999995 778778888888777777654 455
Q ss_pred HhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHH
Q 002941 771 ISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 771 ~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.++++ .+.++||.|+|+++++.+.. .+..+...|+++||++.+.+ +.+|+.||+++|++|+|+++++|
T Consensus 335 ~~~~~~~~~~vrg~Gl~~~l~l~~~~--------~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l 406 (412)
T TIGR02407 335 VAEYPELIKQVRGRGLMQGIECGDGD--------LAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406 (412)
T ss_pred HhhCCCceEeeecceeEEEEEecChH--------HHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 66777 67899999999999997542 46788999999999997643 89999999999999999999999
Q ss_pred HHHHHH
Q 002941 847 YQRLEE 852 (863)
Q Consensus 847 ~~~l~~ 852 (863)
++++++
T Consensus 407 ~~~l~~ 412 (412)
T TIGR02407 407 EQAVEE 412 (412)
T ss_pred HHHHhC
Confidence 998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=567.20 Aligned_cols=391 Identities=20% Similarity=0.252 Sum_probs=317.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+.....+.+++..+|+|+|++.
T Consensus 22 p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~ 94 (425)
T PRK09264 22 PVVFDK--AKGSWLYDEDGK----EYIDFFAGAGALNYGH-NNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEET 94 (425)
T ss_pred CccEEe--eecCEEEeCCCC----EeeecccchhhccCCC-CCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHh
Confidence 456665 889999999999 9999999999999999 899999999999998766654456789999999999997
Q ss_pred c--CCCCCCeEEE-eCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 456 V--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 456 ~--p~~~~~~v~f-~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+ |.+...+++| +||||||||+|||+| |.| +|| ++||+|+++|||+|.+++++|+...+
T Consensus 95 ~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~~~ls~~~~~~~ 155 (425)
T PRK09264 95 ILKPRGLDYKVQFTGPTGTNAVEAALKLA-RKV-------TGR-----------TNIVAFTNGFHGMTLGSLAVTGNSHK 155 (425)
T ss_pred hcCCcCCCceEEEeCCCHHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCccCCccHHHHHhcCCccc
Confidence 5 3232236766 589999999999999 666 454 78999999999999999999886544
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+.. ++ ++. .++.++|+|++++ .+ ....+.+++.|++.
T Consensus 156 ~~~--------~~----~~~----~~~~~~p~~~~~~---------------------~~-----~~~~~~l~~~l~~~- 192 (425)
T PRK09264 156 RQG--------AG----VPL----NNVTRMPYDGYFG---------------------GD-----VDTLAYLEKLLEDS- 192 (425)
T ss_pred ccC--------CC----CCC----CCeEEeCCCCccc---------------------cc-----hhHHHHHHHHHHhc-
Confidence 321 11 111 2345566664220 00 01134566666531
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
..+.+++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||+|+
T Consensus 193 -~~~~~~~aavi~Epv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~ 270 (425)
T PRK09264 193 -SSGVDLPAAVIVETV-QGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSIS 270 (425)
T ss_pred -cCCCCceEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccC
Confidence 112357999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHH-HHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 G-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI-KWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 g-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL-~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+ | +|+|++++++++. .+.. ..|++||++||++|++++++| ++++++++.++++++++++++.+ .++
T Consensus 271 ~~G-~pigav~~~~~i~-~~~~------~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l----~~l 338 (425)
T PRK09264 271 GYG-LPMALVLIKPELD-VWKP------GEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERL----EEI 338 (425)
T ss_pred CCc-cceEEEEEchhhh-ccCC------CccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHH
Confidence 8 7 8999999999973 4432 247899999999999999999 67777778888888888887754 444
Q ss_pred HhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHH
Q 002941 771 ISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 771 ~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+++|. +.++||.|+|+++++.+.. ....+.+.|+++||++.+.+ ++|||.||+++|+++|++++++|
T Consensus 339 ~~~~~~~~~~vrg~Gl~~~i~l~~~~--------~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l 410 (425)
T PRK09264 339 AAKYPGLGAEVRGRGMMQGIDFGDGE--------LAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDIL 410 (425)
T ss_pred HHhCCCceecceecccEEEEEecChH--------HHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 556774 5889999999999996432 46788999999999998754 89999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 002941 847 YQRLEEFDKVE 857 (863)
Q Consensus 847 ~~~l~~l~~~~ 857 (863)
+++++++.+.+
T Consensus 411 ~~~l~~~~~~~ 421 (425)
T PRK09264 411 EEAVAEVLAEE 421 (425)
T ss_pred HHHHHHHHhcc
Confidence 99998875443
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-63 Score=613.36 Aligned_cols=399 Identities=19% Similarity=0.190 Sum_probs=322.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+ .++|| +||+|++|+.+|++++.+.+ .+.++.+.+|+|+|+++
T Consensus 568 p~~i~~--g~G~~l~D~dG~----~ylD~~~~~--~~lGh-~hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~~ 636 (972)
T PRK06149 568 PPQIER--GWRHHLFDMAGR----SYLDMVNNV--TVLGH-GHPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAAL 636 (972)
T ss_pred CCeEEE--eeeeEEEeCCCC----EEEECCCCc--cccCC-CCHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHHh
Confidence 446666 788999999999 999999885 37999 89999999999999986543 35789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ +++|+|+||||||||+|||+| |.| +|| ++||+++++|||+|.+++++++....+.
T Consensus 637 ~p~~-~~~v~f~~SGsEA~e~AlklA-r~~-------tgr-----------~~ii~~~~~yHG~t~ga~~~s~~~~~~~- 695 (972)
T PRK06149 637 APDG-LDTVFLVNSGSEANDLAIRLA-WAA-------SGR-----------RDVVSVLEAYHGWTVATDAVSTSIADNP- 695 (972)
T ss_pred CCCC-cCEEEEeCCchHHHHHHHHHH-HHh-------cCC-----------CeEEEEeCCCCCcChhHhhhcCCccccc-
Confidence 9865 689999999999999999999 667 454 7899999999999999998875321110
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+.. . ...++..++.|+.++. +|.. ++ ....+.+.+++.++.. ..
T Consensus 696 ---~~~~---~--------~~~~v~~~~~p~~~~~---------------~~~~-~~---~~~~~~~~~~~~l~~~--~~ 740 (972)
T PRK06149 696 ---QALE---T--------RPDWVHPVESPNTYRG---------------RFRG-AD---SAADYVRDVVAQLEEL--DA 740 (972)
T ss_pred ---cccC---C--------CCCCeEEeCCCcccCC---------------cCCC-cc---cHHHHHHHHHHHHHHH--hh
Confidence 0100 0 0123445566654421 1111 11 0112334444444432 12
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEeccccCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||+|+ +|+++++|+.|||+||||+||||
T Consensus 741 ~~~~iAavI~Epv-~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G 819 (972)
T PRK06149 741 SGRGLAGFICEPV-YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNG 819 (972)
T ss_pred cCCceEEEEEccc-ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCC
Confidence 4678999999998 999999999999999999999999999999999999999998 77999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.... .+.+||+|||++||+++|+|++++++++.+++.++++++++.| .++.+++
T Consensus 820 -~Pl~av~~~~~i~~~~~~~~-----~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L----~~l~~~~ 889 (972)
T PRK06149 820 -HPLGAVITRREIAEALEAEG-----YFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARL----EALADRH 889 (972)
T ss_pred -eeeEEEEEcHHHHhhhccCC-----cccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 79999999999999986421 3567899999999999999999998888888888887777754 5566789
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.|++|||.|+|++++|..+..+.......+..++..|+++||++.+.| ++++|.||+++|+++||+++++|+++++
T Consensus 890 ~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~ 969 (972)
T PRK06149 890 PLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLT 969 (972)
T ss_pred CCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999975432222333457789999999999999876 8999999999999999999999999987
Q ss_pred H
Q 002941 852 E 852 (863)
Q Consensus 852 ~ 852 (863)
+
T Consensus 970 ~ 970 (972)
T PRK06149 970 E 970 (972)
T ss_pred h
Confidence 5
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=557.87 Aligned_cols=372 Identities=23% Similarity=0.288 Sum_probs=305.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+... .+.+++..+|+++|.+.
T Consensus 19 ~~~~~~--~~G~~~~d~dG~----~~lD~~sg~~~~~lGh-~~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~~ 90 (395)
T PRK03715 19 DIVFTH--GKGSWLYDHNGK----RYLDFIQGWAVNCLGH-CNPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQH 90 (395)
T ss_pred CceEEe--eecCEEEECCCC----EEEECCcChhhccCCC-CCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhhc
Confidence 456665 788999999999 9999999999999999 899999999999999877643 46789999999999987
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|+||||||||+|+|+| |.|+. ++. +| |++||+++++|||+|.+++++++...++..
T Consensus 91 ~~---~~~v~f~~SGseA~e~Aik~a-r~~~~-~~~-~~-----------r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~ 153 (395)
T PRK03715 91 SC---FDKVFFANSGAEANEGAIKLA-RKWGR-KHK-NG-----------AYEIITFDHSFHGRTLATMSASGKPGWDTI 153 (395)
T ss_pred cC---CCEEEEeCCcHHHHHHHHHHH-HHHhh-ccC-CC-----------CcEEEEECCCcCCChHHHHhhcCCcccccC
Confidence 54 579999999999999999999 56643 221 23 378999999999999999999886544321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. .+ ++.+.++ +| .+.+++.++
T Consensus 154 ~--------~~~--~~------~~~~~~~--------------------------~d--------~~~l~~~l~------ 177 (395)
T PRK03715 154 F--------APQ--VP------GFPKAEL--------------------------ND--------IASVEKLIT------ 177 (395)
T ss_pred C--------CCC--CC------CceeeCC--------------------------ch--------HHHHHHHcC------
Confidence 1 110 00 1111111 11 234454442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|+.|||+||||+||||
T Consensus 178 --~~~aavi~Epv-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G- 253 (395)
T PRK03715 178 --DKTVAVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG- 253 (395)
T ss_pred --CCceEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCC-
Confidence 46899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|+++++++++. +.. ..|++||++||++||+++++|++++++++.++++++++++++.| .++..+++
T Consensus 254 ~p~~av~~~~~i~~-~~~------~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~~~ 322 (395)
T PRK03715 254 VPLAALLAKAEVAV-FEA------GDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKL----LELSEERG 322 (395)
T ss_pred cceEEEEEcccccc-ccC------CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHhhcCC
Confidence 89999999999863 222 14789999999999999999999988888889988888888755 44555666
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC---CcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED---GVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~---GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.++||.|+|++|++.++. ...+...+++. ||++.+. ++++||.||+++|++|||+++++|+++++
T Consensus 323 -i~~vrG~Glm~~i~l~~~~---------~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~ 392 (395)
T PRK03715 323 -LEGERGEGLLRALLLGKDI---------GPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLD 392 (395)
T ss_pred -cCeEEcceeEEEEEecCch---------HHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 6789999999999997531 23444445544 9999754 58999999999999999999999999987
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 393 ~~ 394 (395)
T PRK03715 393 KL 394 (395)
T ss_pred hh
Confidence 64
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=556.13 Aligned_cols=427 Identities=18% Similarity=0.149 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHhHhhcChhhhhccccccc--CCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeeccccc
Q 002941 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWP--FTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (863)
Q Consensus 333 ~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p--~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~ 410 (863)
...+..+..++.++..++..+.+++++.+... ++....+....|+++++ |+|+|+||+||| +|||+.+|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~--a~G~~v~D~DG~----~yiD~~~g~g~ 86 (453)
T PRK07046 13 AALLARERARFLEAHPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAE--ARGARFTDVDGH----RYDDFCLGDTG 86 (453)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEe--eeeCEEEeCCCC----EEEEecccccc
Confidence 33444456667777778888888888877542 22222232234666766 888999999999 99999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 411 ~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
+++|| +||+|++|+.+|+++..+. .+.++...+|||+|++.+| .++|+|+||||||||.|||+| |.|
T Consensus 87 ~~lGh-~~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlA-R~~----- 153 (453)
T PRK07046 87 AMFGH-SPAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWA-RAV----- 153 (453)
T ss_pred cccCC-CCHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHH-HHh-----
Confidence 99999 8999999999999987543 4578999999999999886 689999999999999999999 677
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceec--CCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~ 568 (863)
||| ++||.|+++|||++.+++... +...++. . +...|.. ..+.+..++
T Consensus 154 --TGr-----------~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~--------~---~~g~~~~-~~~~~~~~~----- 203 (453)
T PRK07046 154 --TGR-----------PKILVFNGCYHGTVDDVFVDLVDGRPVQRP--------G---LLGQVHD-LTATTRVVE----- 203 (453)
T ss_pred --hCC-----------CEEEEECCCCCCCcHHhHhhccCCCCCCCC--------C---CCCCCcc-ccCceEeeC-----
Confidence 565 889999999999987766432 2111110 0 0000000 000111111
Q ss_pred hhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHH
Q 002941 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (863)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lre 648 (863)
.+| .+.+++.+. ++++||||+||+ ||++|+++|+++||++|++
T Consensus 204 ---------------------~nd--------~~~l~~~l~-------~~~vAavi~EPi-~g~~G~~~p~~~fl~~lr~ 246 (453)
T PRK07046 204 ---------------------FND--------LAALEAALA-------DGDVAAVLAEPA-MTNIGMVLPEPGFHEALRE 246 (453)
T ss_pred ---------------------CCC--------HHHHHHHhC-------CCCeEEEEECCC-CCCCCCcCCCHHHHHHHHH
Confidence 123 234555552 367999999998 9999999999999999999
Q ss_pred HHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC---ccceeecccC
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS---KLKALLHGHS 725 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~---~~~~~~~~~T 725 (863)
+|+|||+|||+|||+| | |+|..++.+++|++|||+||||+|||| +|+|++++++++++.+.... ....+.|++|
T Consensus 247 lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T 323 (453)
T PRK07046 247 LTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTT 323 (453)
T ss_pred HHHHhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCC
Confidence 9999999999999999 6 688777888999999999999999999 89999999999999986311 0123468899
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC------CC
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN------AG 799 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~------~~ 799 (863)
|++||++|||++++|++++++++++++.+.++++++.| .++.++++.+..|+|.|+++.+++.++... ..
T Consensus 324 ~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~ 399 (453)
T PRK07046 324 LSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGL----RAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAA 399 (453)
T ss_pred CcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcc
Confidence 99999999999999999988888899988888888754 556678888889999999999998643211 01
Q ss_pred CchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
........++..|+++||++.|.++.++++|+ +|++|||+++++++++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 400 LDPELEAALHLYLLNRGVLITPFHNMMLVCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred cCHHHHHHHHHHHHHCCCEEecccCcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 12234567888999999999987777777764 999999999999999998753
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-62 Score=549.84 Aligned_cols=377 Identities=23% Similarity=0.319 Sum_probs=315.4
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~ 462 (863)
+|+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+... .+.+++..+|+|+|++..+ .+
T Consensus 3 ~~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~ 73 (382)
T PLN00144 3 SGKGCKLYDVEGK----EYLDMAAGIAVNALGH-GDPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF---AD 73 (382)
T ss_pred eeeccEEEeCCCC----EEEECCcCHHhccCCC-CCHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC---CC
Confidence 3789999999999 9999999999999999 899999999999999877653 3568999999999999875 57
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 463 ~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
+|+|+||||||||+|||+| |.|+.++|...++ ...+.|.+||+|+++|||+|.+++++++...++..+
T Consensus 74 ~v~f~~sGseA~e~AlklA-r~~~~~~~~~~~~-----~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~------ 141 (382)
T PLN00144 74 RVFFCNSGTEANEAAIKFA-RKYQRVRAPDKKD-----PAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPF------ 141 (382)
T ss_pred eEEEeCCcHHHHHHHHHHH-HHHHhccCCCCcc-----ccccccceEEEECCCcccccHHHHhcCCCccccccC------
Confidence 9999999999999999999 6786555432110 000114789999999999999999998866554311
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
.+. . +++.+++++ | .+.+++.++ .++++|
T Consensus 142 --~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~~~-------~~~~aa 170 (382)
T PLN00144 142 --EPL--M------PGVTFVEYG--------------------------N--------LEAARKLIQ-------KGKTAA 170 (382)
T ss_pred --CCC--C------CCeEEeCCC--------------------------C--------HHHHHHhcC-------CCCeEE
Confidence 111 1 122333332 1 134444442 368999
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeee
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~ 702 (863)
||+||+ ||+||+..++++|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+||||+|+|| +|+|+++
T Consensus 171 vi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~ 248 (382)
T PLN00144 171 VFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVL 248 (382)
T ss_pred EEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceEEEE
Confidence 999998 99999999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 703 ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 703 ~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
+++++++.+... .+++||++||++|++++|+|++++++++.+++++.++++++ .+.+++.++|.+.+|||
T Consensus 249 ~~~~~~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~----~l~~~~~~~~~~~~vrg 318 (382)
T PLN00144 249 VTEKVASAINPG------DHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRE----LLRRKLGGNPHVKEVRG 318 (382)
T ss_pred EcHHHHhccCCC------CCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH----HHHHHHhhCCCceeeec
Confidence 999999988642 47899999999999999999999988888888888877765 44556778888899999
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.|+|++++|... +..+...|+++||++.+.+ +.+|+.||++++++++++++++|++++.++
T Consensus 319 ~G~~~~l~l~~~----------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 319 VGLLVGIQLDVP----------AGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred CceEEEEEecCc----------cHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 999999999321 3568899999999999864 899999999999999999999999999764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=550.63 Aligned_cols=378 Identities=24% Similarity=0.317 Sum_probs=318.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+.. ..+.+++..+|+++|+++
T Consensus 18 ~~~~~~--~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~L~~~ 89 (397)
T TIGR03246 18 PFIPVR--GEGSRVWDQQGK----EYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIG-NGYTNEPVLRLAKKLVDA 89 (397)
T ss_pred CceEEE--eecCEEEeCCCC----EEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHhh
Confidence 456666 888999999999 9999999999999999 89999999999999865543 246789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|+||||||||+|||+| |.|++.++. +|| .+||+++++|||+|.+++++++.+.++..
T Consensus 90 ~~---~~~~~f~~SGseA~e~Alk~a-r~~~~~~~~-~~r-----------~~ii~~~~~yHG~~~~~~~~~~~~~~~~~ 153 (397)
T TIGR03246 90 TF---ADKVFFCNSGAEANEAALKLA-RRYALDKHG-ADK-----------SEIVAFKNSFHGRTLFTVSVGGQPKYSQG 153 (397)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC-CCC-----------CEEEEECCCcCCccHHHHHhcCCcccccC
Confidence 86 479999999999999999999 677655432 243 78999999999999999999876544421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.++ + +++.++++| | .+.+++.+.
T Consensus 154 --------~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~l~------ 177 (397)
T TIGR03246 154 --------FAPL--P------GGIKHAPYN--------------------------D--------LAAAKALIS------ 177 (397)
T ss_pred --------CCCC--C------CceEEeCCC--------------------------C--------HHHHHHHhc------
Confidence 1111 1 123333332 2 134555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
++++|||+||+ ++++|+++|+++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||+|+||
T Consensus 178 --~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG- 253 (397)
T TIGR03246 178 --DKTCAVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG- 253 (397)
T ss_pred --cCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCC-
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+++||++||++|++++++|++++++++.++++++++++.+.| .++..+++
T Consensus 254 ~pigav~~~~~i~~~~~~~------~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L----~~l~~~~~ 323 (397)
T TIGR03246 254 FPIGAMLTTTEIAAHLKVG------THGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL----EKINARYN 323 (397)
T ss_pred cceeEEEEcHHHHHhccCC------CcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHhcCC
Confidence 8999999999999988642 4788999999999999999999988888888888888887755 44445688
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.++||.|+|+++++.++. ...+..++..|+++|+++.+.| +.+|+.||+++|+++||+++++|+++++++
T Consensus 324 ~~~~vrg~G~~~~i~~~~~~------~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 324 VFSEIRGKGLLIGAVLTEAY------QGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CeEeeecCceEEEEEEcCch------hhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999999997531 1246788999999999998876 899999999999999999999999988754
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=547.69 Aligned_cols=338 Identities=27% Similarity=0.400 Sum_probs=279.6
Q ss_pred EEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCC
Q 002941 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK 458 (863)
Q Consensus 379 i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~ 458 (863)
|++ ++|+|+||.||+ +|+|+++++|++++|| +||+|++|+++|++++.+.++..+.+++..+|+++|.+.+|.
T Consensus 2 i~~--a~G~~l~d~dG~----~~lD~~~~~~~~~lGh-~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~ 74 (339)
T PF00202_consen 2 IER--AEGAYLWDVDGR----EYLDFMSGYGSVNLGH-NHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPG 74 (339)
T ss_dssp EEE--EEBTEEEETTSE----EEEESSHHHHTTTT-B-T-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSST
T ss_pred eEE--eecCEEEECCCC----EEEECCCCccceecCC-CccccchhHHHHhhhcccccccceeccchhhhhhhhhhcccc
Confidence 555 788999999999 9999999999999999 899999999999999998876788999999999999999976
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcC
Q 002941 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (863)
Q Consensus 459 ~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~ 538 (863)
+ +++|+|++|||||||.|||+|+ +|+..++. ++| ++||+|+++|||+|.+++++++.+.++..+
T Consensus 75 ~-~~~v~f~~sGseAve~Alkla~-~~~~~~~~-~~r-----------~~il~~~~~yHG~t~~~~s~~~~~~~~~~~-- 138 (339)
T PF00202_consen 75 G-LDRVFFANSGSEAVEAALKLAR-QYHNKRAY-TGR-----------RKILAFEGSYHGRTLGALSLTGNPPYRKGF-- 138 (339)
T ss_dssp T-EEEEEEESSHHHHHHHHHHHHH-HHHHHTHH-HTT-----------TEEEEETTTB-TSSHHHHHHSSSTHHHTTT--
T ss_pred c-cceeeeccCchHHHHHHHHHhh-cccccccc-cCC-----------ceEEEeeeeeeccCcccccccCCccccccc--
Confidence 4 7999999999999999999994 56555544 354 899999999999999999998766554321
Q ss_pred CcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 002941 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (863)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~ 618 (863)
.+.+ .++.++|+|+... ++....+...+++.+.+ .+++
T Consensus 139 ------~~~~--------~~~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~~ 176 (339)
T PF00202_consen 139 ------GPLY--------PGVVFVPFPDPAA------------------------DEEEQACLNALEELIAA----LNAD 176 (339)
T ss_dssp ------CSSS--------TTEEEEETTCHHH------------------------HHHHHHHHHHHHHHHHH----HHGG
T ss_pred ------cccc--------cccccccCCccch------------------------hhhHHHHHHHHHHHHHh----hcCC
Confidence 1111 2345566665431 01111222333333322 2467
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPL 698 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pi 698 (863)
+|||||+||| ||++|++++|++||++|+++|+|||++||+|||+|||||||++|+++++|+.|||+|+||+|+|| +|+
T Consensus 177 ~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p~ 254 (339)
T PF00202_consen 177 EIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LPI 254 (339)
T ss_dssp GEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SSE
T ss_pred cEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-hhc
Confidence 8999999997 99999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 699 AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
|++++++++++.+... .|++||++||++|++++++|++++++++.+++++.++++.+.| .++.++++.|.
T Consensus 255 sav~~~~~i~~~~~~~------~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L----~~l~~~~~~i~ 324 (339)
T PF00202_consen 255 SAVLGSEEIMEAFQPG------SHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGL----RELAARYPLIG 324 (339)
T ss_dssp EEEEEEHHHHTTSCTT------SSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHTTTEE
T ss_pred ccccccchhhcccccc------ccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHH----HHHHHhCCCeE
Confidence 9999999999988653 3899999999999999999999999888888888888887754 55666779999
Q ss_pred EecccceEEEEEEcc
Q 002941 779 RVVALGTLCAIELQA 793 (863)
Q Consensus 779 ~vrg~Gl~~~iel~~ 793 (863)
+|||.|+|++|++++
T Consensus 325 ~vrg~Gl~~~ie~~k 339 (339)
T PF00202_consen 325 EVRGIGLMIGIELVK 339 (339)
T ss_dssp EEEEETTEEEEEESS
T ss_pred EEeeeCeEEEEEEEC
Confidence 999999999999964
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=549.50 Aligned_cols=383 Identities=18% Similarity=0.230 Sum_probs=302.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||+||| +|||+++|+|++++|| +||+|++|+++|++++.+. ...+++..+|||+|++.
T Consensus 82 p~~~~~--a~G~~l~D~dG~----~yiD~~~g~g~~~lGh-~~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~~ 151 (474)
T PLN02482 82 PIVFDR--VKGSYAWDVDGN----EYIDYVGSWGPAIIGH-ADDEVLAALAETMKKGTSF---GAPCLLENVLAEMVIDA 151 (474)
T ss_pred CeeEEE--eeeCEEEECCCC----EEEEecccccccccCC-CCHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHh
Confidence 566776 888999999999 9999999999999999 8999999999999997653 45789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccc--eecCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM--EAQAPSPYT 533 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gal--s~t~~~~~~ 533 (863)
+|. +++|+|+||||||||.|||+| |.| ||| ++||.|+++|||++...+ +.++...+.
T Consensus 152 ~p~--~~~v~f~~SGsEA~e~AlklA-R~~-------tgr-----------~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~ 210 (474)
T PLN02482 152 VPS--VEMVRFVNSGTEACMGVLRLA-RAY-------TGR-----------EKIIKFEGCYHGHADSFLVKAGSGVATLG 210 (474)
T ss_pred CCC--CCEEEEeCChHHHHHHHHHHH-HHh-------cCC-----------CEEEEECCccCCCcchhhhhcCCCccccC
Confidence 984 689999999999999999999 677 565 789999999999885533 333211111
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
. ++.. .. |... ...+.. +| .+| .+.+++.|++
T Consensus 211 ~----~~~~----g~--~~~~-~~~~~~--~~------------------------~nd--------~~~l~~~l~~--- 242 (474)
T PLN02482 211 L----PDSP----GV--PKAA-TSATLT--AP------------------------YND--------LEAVKKLFEA--- 242 (474)
T ss_pred C----CCCC----CC--CCCC-CCCeEE--ec------------------------CCC--------hHHHHHHHHh---
Confidence 0 0000 00 0000 000011 11 122 2445666643
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+++++||||+||| ||++|+++|+++||++|+++|++||++||+|||+||| |+|.+|+++++|+.||++||||+|||
T Consensus 243 --~~~~iAavI~Epv-~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lgg 318 (474)
T PLN02482 243 --NKGEIAAVILEPV-VGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGG 318 (474)
T ss_pred --CCCceEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhhC
Confidence 4678999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|+|++++++++++.+... ..+.|++||++||++|||++++|+++++++++++++++++++++.| .++..+
T Consensus 319 G-~Pigav~g~~ei~~~~~~~---~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~ 390 (474)
T PLN02482 319 G-LPVGAYGGRREIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGI----LEAGKK 390 (474)
T ss_pred C-CceEEEEEcHHHHHhhccC---CCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 9 8999999999999998632 1356889999999999999999999988888999998888888765 445555
Q ss_pred C--CCe-eEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHH
Q 002941 774 H--RTV-QRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~--p~v-~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+ |.+ .+++| |++++|.++... ..........+.+.|+++||++.+.+...+ .||+.+|++|||+++++
T Consensus 391 ~g~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~~-~psl~ht~~dId~~l~a 466 (474)
T PLN02482 391 AGHEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEAG-FTSLAHTEEDIDFTIAA 466 (474)
T ss_pred cCCCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCCC-cCCCCCCHHHHHHHHHH
Confidence 4 443 34544 889999764211 011223456789999999999988653223 38999999999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
++++++++
T Consensus 467 l~~~l~~~ 474 (474)
T PLN02482 467 AERVLARI 474 (474)
T ss_pred HHHHHHhC
Confidence 99998753
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-61 Score=548.73 Aligned_cols=395 Identities=16% Similarity=0.162 Sum_probs=305.9
Q ss_pred cccceEEEEc-CCCcccceEEeeecccccccCCCCCcHHHH--HHHHHHHHhcccc--cCCCCCChHHHHHHHHHHhhcC
Q 002941 383 CGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELA--RDMGYTAARFGHV--MFPENVYEPALECAELLLQGVG 457 (863)
Q Consensus 383 ~G~G~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~--~Ai~~q~~~~~~~--~~~~~~~~~~~eLae~L~~~~p 457 (863)
+|+|+|+||. ||+ +|||+++|+|++++|| +||+|+ +|+.+|++++.+. ....+.+++..+++++|+++++
T Consensus 25 ~a~G~~l~D~~dG~----~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 99 (431)
T TIGR03251 25 RSRGSVLVDARDGR----RYLDMFSFFASMALGM-NHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLG 99 (431)
T ss_pred eccCCEEEECCCCC----ChhhcccChhhcCCCC-CChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcC
Confidence 4899999996 999 9999999999999999 899999 9999999987532 2234678999999999999873
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhh----ccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~----~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
.+.+++|+|+||||||||+|||+| |+|+.+ +|++ + ..|++||+|+++|||+|.+++++++...++
T Consensus 100 ~~~~~~v~f~~sGsEAve~AlklA-r~~t~~~~~~~g~~-~---------~~~~~ii~~~~~yHG~t~~als~~~~~~~~ 168 (431)
T TIGR03251 100 DPALPHLFFIEGGALAVENALKTA-FDWKSRHNQARGIP-A---------ALGTQVLHLRQAFHGRSGYTLSLTNTDPRK 168 (431)
T ss_pred CCCcCEEEEeCCcHHHHHHHHHHH-HHHhhcchhhcCCC-C---------CCCceEEEECCccCCcchhhhhccCCcccc
Confidence 233789999999999999999999 677532 2321 0 013789999999999999999998854333
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.. +.+..+. .+++.|... +++..+. ..+...+...+.+.+++.++.
T Consensus 169 ~~--------~~~~~~~---------~~~~~p~~~-----------~~~~~~~---~~~~~~~~~~~l~~~~~~~~~--- 214 (431)
T TIGR03251 169 TA--------RFPKFDW---------PRIDNPKLT-----------FPLDAPN---LDQVIALEEEALRQARAAFAE--- 214 (431)
T ss_pred cc--------CCCCCCC---------ccCCCCccc-----------CCccccc---cchhhHHHHHHHHHHHHHHHh---
Confidence 21 1111000 012222110 0000000 000112223345566666653
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|+.||++|+||++
T Consensus 215 --~~~~iAavivEPv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~-- 289 (431)
T TIGR03251 215 --RPHDIACFIAEPI-QGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT-- 289 (431)
T ss_pred --CCCcEEEEEEecc-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC--
Confidence 4679999999998 99999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
|+++++..+++.+.....-. ....+++||++||++|++++|+|++++++++.++++++++++.+.| .++.++
T Consensus 290 ---~~~g~~~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L----~~l~~~ 361 (431)
T TIGR03251 290 ---QVCGIMAGRRVDEVADNVFA-VPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARL----HELAAE 361 (431)
T ss_pred ---ccceEEecchHHHhhhhccc-CccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHh
Confidence 56667777665443221000 0124789999999999999999999988888888988888888755 445567
Q ss_pred CC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 774 HR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 774 ~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++ .+.++||.|+|+++++.+.. ....+.+.|+++||++.+.+ +.+||+||+.+|++|||+++++|++
T Consensus 362 ~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 362 FPHLVSNPRGRGLMCAFDLPSTA--------DRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred CccceecccccceeEEEEeCCHH--------HHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 88 89999999999999996432 45678999999999999876 8999999999999999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-60 Score=540.44 Aligned_cols=385 Identities=22% Similarity=0.272 Sum_probs=306.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++... .+.+++..+|+++|++.
T Consensus 36 p~~i~~--a~G~~l~D~dG~----~yiD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~L~~~ 105 (433)
T PRK00615 36 PPIVSS--ASGDIFIDSLGK----TFIDFCGSWGSLIHGH-SHPKICDAIQQGAERGTSY---GLTSEQEILFAEELFSY 105 (433)
T ss_pred CceEEE--eeeCEEEECCCC----EEEEcccchhccccCC-CCHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHh
Confidence 556666 888999999999 9999999999999999 8999999999999987532 46789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc---cccceecCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT---LGAMEAQAPSPY 532 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t---~gals~t~~~~~ 532 (863)
+|.+ .++|+|+||||||||+|||+| |.| ||| ++||+|+++|||+| ++++++++....
T Consensus 106 ~~~~-~~~v~f~~SGsEA~e~AiklA-r~~-------tgr-----------~~ii~~~~~yHG~td~~~~~~~~~~~~~~ 165 (433)
T PRK00615 106 LGLE-DHKIRFVSSGTEATMTAVRLA-RGI-------TGR-----------SIIIKFLGCYHGHADTLLQGISFSETSLD 165 (433)
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCccCCCCcccCcccccCCCCcC
Confidence 8754 479999999999999999999 667 465 78999999999998 677777653211
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
. +....+ ..++. ... ..+| .+| .+.+++.|++
T Consensus 166 ~------~~~~~~--~~~~~----~~~--~~~~------------------------~~d--------~~~l~~~l~~-- 197 (433)
T PRK00615 166 T------LTHLVD--TDLAH----PLT--LSLP------------------------YND--------FQIFQTVMNS-- 197 (433)
T ss_pred c------CCCCCC--CCCCC----CCe--EeCC------------------------CCC--------HHHHHHHHHh--
Confidence 1 000000 00000 000 0111 022 2445666643
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
.++++|+||+||| |+++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|+.|||+||||+||
T Consensus 198 ---~~~~~aavI~Epv-~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lg 272 (433)
T PRK00615 198 ---LGHRVAGVIFEPI-CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILG 272 (433)
T ss_pred ---cCCceEEEEECCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEccccc
Confidence 2468999999998 9999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
|| +|+|++++++++++.+... ..+++++||++||++|||++++|++++++++++++.++++++.+.|+ +.+.
T Consensus 273 gG-~p~~av~~~~~i~~~~~~~---~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~----~~~~ 344 (433)
T PRK00615 273 GG-LPAAAVVAHKSIMDHLAPE---GTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIE----EMIR 344 (433)
T ss_pred CC-cceeeeeecHHHHhhhcCC---CCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHH
Confidence 99 7999999999999998642 12468899999999999999999999888888999888888877654 4444
Q ss_pred c--CCCeeEecccceEEEEEEccCCcC--CCC---chHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHH
Q 002941 773 S--HRTVQRVVALGTLCAIELQAAGCN--AGY---GSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 773 ~--~p~v~~vrg~Gl~~~iel~~~~~~--~~~---~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+ ++ +..+| .|+|++++|.++... .+. .......+...|+++||++.+...... ..+..+|++|||+++++
T Consensus 345 ~~g~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~-~ls~~ht~~did~~~~a 421 (433)
T PRK00615 345 SQGFP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS-FLSSAHSMENLDYAQNV 421 (433)
T ss_pred HcCCC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc-ceecCCCHHHHHHHHHH
Confidence 4 45 77888 999999999864311 000 223456899999999999987531111 23678999999999999
Q ss_pred HHHHHHHHH
Q 002941 846 LYQRLEEFD 854 (863)
Q Consensus 846 L~~~l~~l~ 854 (863)
++++++++-
T Consensus 422 ~~~~~~~~~ 430 (433)
T PRK00615 422 LIDSLEKVF 430 (433)
T ss_pred HHHHHHHHh
Confidence 999998753
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-60 Score=538.69 Aligned_cols=379 Identities=24% Similarity=0.289 Sum_probs=317.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|++++.+.. ..+.++++.+|+++|+++
T Consensus 22 ~~~~~~--~~G~~~~d~dG~----~~lD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 93 (406)
T PRK12381 22 PFIPVR--GEGSRLWDQQGK----EYIDFAGGIAVNALGH-AHPALREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDA 93 (406)
T ss_pred CceEEE--eecCEEEeCCCC----EEEEcCcCHhhccCCC-CCHHHHHHHHHHHhhccccc-CccCCHHHHHHHHHHHhh
Confidence 456666 788999999999 9999999999999999 79999999999999876654 346789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++|+|++||+||||+|+|+| |.|+..++. ++ +++||+++++|||+|.+++++++.+.++..
T Consensus 94 ~~---~~~v~~~~sGseA~e~Alk~a-r~~~~~~~~-~~-----------r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 157 (406)
T PRK12381 94 TF---ADRVFFCNSGAEANEAALKLA-RKYAHDRYG-SH-----------KSGIVAFKNAFHGRTLFTVSAGGQPKYSQD 157 (406)
T ss_pred CC---CCeEEEcCCcHHHHHHHHHHH-HHHHhhcCC-CC-----------CCeEEEECCCcCCcchhHHhhcCCcccccC
Confidence 76 479999999999999999999 677654443 23 378999999999999999999886554421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
++++ + +++.++++| | .+.+++.+.
T Consensus 158 --------~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~l~------ 181 (406)
T PRK12381 158 --------FAPL--P------PDIRHAAYN--------------------------D--------LNSASALID------ 181 (406)
T ss_pred --------CCCC--C------CCeeEeCCC--------------------------C--------HHHHHHhcc------
Confidence 1111 1 112222222 2 133454442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
++++|||+||+ +++||+++|+++|+++|+++|++||++||+|||||||||+|++|+++++++.||++||||+|+||
T Consensus 182 --~~~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG- 257 (406)
T PRK12381 182 --DQTCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG- 257 (406)
T ss_pred --CCeeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC-
Confidence 47999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.++++++++++.+.| .++..+++
T Consensus 258 ~~ig~~~~~~~~~~~~~~------~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L----~~l~~~~~ 327 (406)
T PRK12381 258 FPIGAMLTTEKCASVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL----NTINARYG 327 (406)
T ss_pred CceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 899999999999998864 24788999999999999999999988778888888887777755 44445678
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.++||.|+|+++++.++. ...+..+...|+++||++.+.+ +.+||.||+++|+++|++++++|+++++++.
T Consensus 328 ~~~~vrg~Gl~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~ 401 (406)
T PRK12381 328 LFSEIRGLGLLIGCVLNAEY------AGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACERFV 401 (406)
T ss_pred CEEEEecCeEEEEEEecCch------hhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999997531 0135678899999999998766 7999999999999999999999999998764
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=516.86 Aligned_cols=411 Identities=21% Similarity=0.272 Sum_probs=324.7
Q ss_pred hcChhhhhccccc----ccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHH
Q 002941 350 LCDMPKRAGELFW----WPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDM 425 (863)
Q Consensus 350 ~~~~~~~~~~~l~----~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai 425 (863)
+..+.+++.+.+. .|.......+ ..|.++.+ |+|+|+||+||| +|+|++.+|+...+|| +||.|++|+
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~-~~P~fi~~--g~Ga~l~DvDGn----~YIDy~~~~Gp~ilGH-~~p~V~~Av 78 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG-GYPIFIER--GKGAYLTDVDGN----EYIDYVLGWGPLILGH-AHPAVVEAV 78 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC-CCCeeEEe--ccCCeEEeCCCC----EeeehhccCcccccCC-CCHHHHHHH
Confidence 3445555555442 3322222222 35677776 889999999999 9999999999999999 899999999
Q ss_pred HHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccc
Q 002941 426 GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (863)
Q Consensus 426 ~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~ 505 (863)
++|+++.... +.+++..++|||.|++.+|. .++|.|+|||+||+..|||+| |.| |||
T Consensus 79 ~~~l~~G~~f---g~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiRlA-Ra~-------TgR---------- 135 (432)
T COG0001 79 QEQLERGLSF---GAPTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAY-------TGR---------- 135 (432)
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHHHH-HHh-------hCC----------
Confidence 9999997553 45799999999999999995 589999999999999999999 778 676
Q ss_pred ccEEEEecCCCccCccccceecC--CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccc
Q 002941 506 ELKVLALKGSYHGDTLGAMEAQA--PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSR 583 (863)
Q Consensus 506 r~~II~~~~sYHG~t~gals~t~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 583 (863)
.|||.|+|+|||+....+--.+ ...+.. | +.|.+......+.+.+|
T Consensus 136 -~kIikF~G~YHG~~D~~lv~agsg~~t~g~----p---------~s~Gvp~~~a~~ti~~~------------------ 183 (432)
T COG0001 136 -DKIIKFEGCYHGHSDSLLVKAGSGAATLGS----P---------SSPGVPADVAKHTLVLP------------------ 183 (432)
T ss_pred -CeEEEEcCCCCCCccHHHhhcCcCcccCCC----C---------CCCCCChhhhccEEEec------------------
Confidence 8999999999999987765432 111100 0 11111000000111111
Q ss_pred cchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc
Q 002941 584 DEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663 (863)
Q Consensus 584 ~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~ 663 (863)
+|| .+.+++.+++ .+++|||||+||| +|..|+++|.++|++.||++|++||++||+|||+
T Consensus 184 ------yND--------~~al~~~~~~-----~g~~IAaVIvEPv-~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi 243 (432)
T COG0001 184 ------YND--------LEALEEAFEE-----YGDDIAAVIVEPV-AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243 (432)
T ss_pred ------CCC--------HHHHHHHHHH-----cCCcEEEEEeccc-cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence 245 3567777764 5789999999998 9999999999999999999999999999999999
Q ss_pred ccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh
Q 002941 664 TGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF 743 (863)
Q Consensus 664 TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l 743 (863)
||| |.+..+++++|||+||+.||||.+||| +|+|++.+++++|+.+.... ..++.+||+|||++++|++++|+.+
T Consensus 244 TGF-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~g---~vyqaGT~sgnplamaAG~atl~~l 318 (432)
T COG0001 244 TGF-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLG---PVYQAGTLSGNPLAMAAGLATLEEL 318 (432)
T ss_pred hhc-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCCC---CccccCCCCCcHHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999 89999999999999887643 4678999999999999999999999
Q ss_pred cC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc------hHHHHHHHHHHHHCC
Q 002941 744 KD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG------SLYAASLLKKLREDG 816 (863)
Q Consensus 744 ~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~------~~~~~~l~~~l~e~G 816 (863)
++ ++.++++.+.+++|.+.+ .+.+.++..-..+.+.|.|+.+.|.+.+ ...+. ......+...|+++|
T Consensus 319 ~~~~~~y~~l~~~~~~L~~gl----~~~~~~~g~~~~v~~~gsm~~i~F~~~~-~~n~~da~~sd~~~~~~~~~~~l~~G 393 (432)
T COG0001 319 MTEEGVYERLDALGERLAEGL----RAAAERHGIPLTVNRVGSMFGIFFTEEG-VRNYADAKRSDVERFAKFFHHLLNRG 393 (432)
T ss_pred HhcccHHHHHHHHHHHHHHHH----HHHHHHhCCCeEEeeecceEEEEecCCC-CCCHHHHHhhchHHHHHHHHHHHhCC
Confidence 76 457899999888888855 5556677666688999999999998753 11221 112345666999999
Q ss_pred cEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 817 VYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 817 V~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
|++.|....-.|. +..||+++||+.+++++++++++.
T Consensus 394 V~l~ps~~ea~fl-S~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 394 VYLAPSQFEAGFL-STAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred cccCCccccceee-ecccCHHHHHHHHHHHHHHHHHhh
Confidence 9999986333343 668999999999999998887764
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=536.99 Aligned_cols=384 Identities=21% Similarity=0.296 Sum_probs=317.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+|+||.||+ +|||+++|+|+.++|| +||+|++|+++|++++.+.+. .+.+++..+|+++|+++
T Consensus 58 p~~~~~--a~G~~l~d~dG~----~ylD~~sg~~~~~~Gh-~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~ 129 (474)
T PLN02624 58 PVVFSR--AKGSRIWDPEGK----KYLDFLSAYSAVNQGH-CHPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSM 129 (474)
T ss_pred CceEEe--eeeCEEEECCCC----EEEEcccchhcccCCC-CCHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhh
Confidence 456766 788999999999 9999999999999999 899999999999999887653 46799999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh-hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+| .++++|+|||+||||+|||+| |.|+. .+|.+++ +.+||.+.++|||+|.+++++++.+.++.
T Consensus 130 ~~---~~~~~f~~SGseA~e~AlklA-r~~~~~~~g~~~~-----------~~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 194 (474)
T PLN02624 130 FG---YDMVLPMNTGAEGVETAIKLA-RKWGYEKKGIPKN-----------EAIIVSCCGCFHGRTLAAISMSCDNEATR 194 (474)
T ss_pred cC---CCeEEEeCChHHHHHHHHHHH-HHHHHhhcCCCCC-----------CcEEEEECCCcCCCCHHHhhcCCCccccc
Confidence 86 579999999999999999999 56642 2232222 36899999999999999999987554432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++.. +++.++++ +| .+.+++.++.
T Consensus 195 --------~~~~~~--------~~~~~~~~--------------------------~d--------~~~l~~~l~~---- 220 (474)
T PLN02624 195 --------GFGPLL--------PGHLKVDF--------------------------GD--------LDALEKIFEE---- 220 (474)
T ss_pred --------cCCCCC--------CCceEeCC--------------------------CC--------HHHHHHHHHh----
Confidence 111111 11222221 12 1345666642
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
++++++|||+||+ ||++|+++|+++||++|+++|++||++||+||||+||||+|++|+++++++.||++||||+++||
T Consensus 221 -~~~~iaaiiiEpv-~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG 298 (474)
T PLN02624 221 -DGDRIAAFLFEPI-QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGG 298 (474)
T ss_pred -CCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCC
Confidence 3568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+.. ..+++||++||++|+++.++|++++++++.+++.++++++++.+ .++..++
T Consensus 299 ~~pigav~~~~~i~~~~~~------~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L----~~l~~~~ 368 (474)
T PLN02624 299 VIPVSAVLADKDVMLCIKP------GEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQL----QKIQKQF 368 (474)
T ss_pred CCcceeeeecHHHHhHhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 9999999999999988753 24789999999999999999999987777777777777777644 4455667
Q ss_pred C-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 R-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+ .+.+++|.|+|++|++..+. .....+.++++.|+++||++.|.+ +.+||.||+.+|+++|++++++|++++..
T Consensus 369 ~~~i~~vrg~G~~~~i~l~~~~----~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 369 PKLIKEVRGRGLLNAVVLNSPK----LGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred CCceEEEEeeEEEEEEEecCCC----cChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 7 47889999999999996431 011246688999999999999865 78999999999999999999999998875
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=471.14 Aligned_cols=407 Identities=19% Similarity=0.276 Sum_probs=328.3
Q ss_pred CCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHH
Q 002941 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (863)
Q Consensus 374 ~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (863)
+.|+-|++ ++|-|+||.+|+ +|||+++. +.-.|| +||+|++|+..|+...... ..+.|+...+.|+.|.
T Consensus 28 sDP~kivR--aq~QYmfDE~g~----~yLDCInN--VaHvgh-chp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~ 96 (452)
T KOG1403|consen 28 SDPLKIVR--AQGQYMFDEEGT----RYLDCINN--VAHVGH-CHPEVVRAGAKQMATISTN--NRFLHDELVQCARTLT 96 (452)
T ss_pred CCchhheh--hccceeeccCcc----cHHHHhhh--hhhccc-CCHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHh
Confidence 35667776 677899999999 99999972 233577 9999999999999987543 4678999999999999
Q ss_pred hhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 454 ~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
..+|+ ++-+||+|||||||+.|||+| |.| +++ +++|+++.+|||.....|.++- |+
T Consensus 97 stlPe--Lsvc~F~NSGSEANDLALRLA-R~f-------tkh-----------qDvItldHAYHGHl~s~mE~SP---YK 152 (452)
T KOG1403|consen 97 STLPE--LSVCFFVNSGSEANDLALRLA-RNF-------TKH-----------QDVITLDHAYHGHLQSVMEVSP---YK 152 (452)
T ss_pred hcCCC--ceEEEEecCCchhhHHHHHHH-Hhh-------ccc-----------CceEEEechhccceeeeeeccc---ee
Confidence 99986 889999999999999999999 667 454 7899999999999877777752 22
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
. ..+.-..-| .-++..|.|+-|+.+.- +.- ..+ .+....|.+.+++.+++.+
T Consensus 153 F--------~~g~~v~kp-----d~VHVAPcPDvyrGK~r---~~~----------~~~-a~~~~~Yad~vk~I~~d~~- 204 (452)
T KOG1403|consen 153 F--------NQGGGVAKP-----DYVHVAPCPDVYRGKFR---DKM----------YPD-ADMGALYADPVKEICQDQL- 204 (452)
T ss_pred c--------cCCCCcCCC-----ceeEecCCccccccccc---ccc----------CCc-ccchhhhhhHHHHHHHHHH-
Confidence 1 111111112 23556788887753210 000 011 1111234555555555421
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEeccccC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~sKgLg 692 (863)
.....|||+|.|.. |+-||-++||.+|++.+.+..+.+|-+.|+||||+||||.|+ +|+++.|++.|||+|+||.||
T Consensus 205 -~~g~gvAAfiAEsl-QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG 282 (452)
T KOG1403|consen 205 -AKGQGVAAFIAESL-QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG 282 (452)
T ss_pred -hcCCcHHHHHHHHH-HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC
Confidence 23567999999997 999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+| .|+++|+++++|+++|...+ +....||+|||++||+++|+|+++++++++++..+.+.+|.. .|.++..
T Consensus 283 NG-hPVa~VattkeIA~Af~atg----v~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~----lL~~~k~ 353 (452)
T KOG1403|consen 283 NG-HPVAAVATTKEIAQAFHATG----VEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEV----LLRRLKQ 353 (452)
T ss_pred CC-CeeeEEeccHHHHHHhcccc----ceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHhh
Confidence 99 89999999999999997632 457799999999999999999999988777777776666665 4456678
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+|++|++|||.|+|++|+++++..++.++...+..+..+|++. ||++... .|.+.|.||++.+++++++++..|++
T Consensus 354 kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~ 433 (452)
T KOG1403|consen 354 KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDE 433 (452)
T ss_pred hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHH
Confidence 9999999999999999999988766667777788888888865 7998754 49999999999999999999999999
Q ss_pred HHHHHH
Q 002941 849 RLEEFD 854 (863)
Q Consensus 849 ~l~~l~ 854 (863)
+|.-+.
T Consensus 434 iLT~me 439 (452)
T KOG1403|consen 434 ILTVME 439 (452)
T ss_pred HHHHHH
Confidence 998665
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=508.75 Aligned_cols=371 Identities=19% Similarity=0.283 Sum_probs=306.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++|+|+.++|| +||+|++|+.+|++++.+.+. .+.+++..+|+++|+++
T Consensus 23 p~~~~~--~~G~~l~d~~G~----~~lD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 94 (396)
T PRK04073 23 PIVISE--AEGVWVKDPEGN----RYMDMLSAYSAVNQGH-RHPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAKL 94 (396)
T ss_pred CceEEe--eeecEEEECCCC----EEEEcCCCHHhccCCC-CCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhc
Confidence 456666 889999999999 9999999999999999 899999999999999887643 45789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh-hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.| .++++|+||||||||+|||+| |.|++ .+|..+| |.+||+++++|||+|.+++++++.+.++.
T Consensus 95 ~~---~~~~~~~~SGseA~e~Alk~a-~~~~~~~~g~~~~-----------r~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 159 (396)
T PRK04073 95 TG---KDMVLPMNTGAEAVETAIKAA-RRWAYDVKGVEPN-----------KAEIIACEGNFHGRTMAAVSLSSEEEYKR 159 (396)
T ss_pred CC---CCeEEEcCChHHHHHHHHHHH-HHHhhhccCCCCC-----------CCEEEEECCCcCCCCHHHHhhcCCccccc
Confidence 76 479999999999999999999 55642 2343234 37899999999999999999987554432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. . +++.+++++ | .+.+++.+.
T Consensus 160 ~--------~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~i~----- 184 (396)
T PRK04073 160 G--------FGPM--L------PGIKKIPYG--------------------------D--------LEALKAAIT----- 184 (396)
T ss_pred C--------CCCC--C------CCceEeCCC--------------------------C--------HHHHHHhcc-----
Confidence 1 1111 0 122223222 1 133444442
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||+||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|++++++++++.||++||||++|+|
T Consensus 185 ---~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~g 260 (396)
T PRK04073 185 ---PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGG 260 (396)
T ss_pred ---cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccCC
Confidence 35899999998 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+... .+.+||++||++|++++++|++++++++.+++.++++++.+.| .++ .+
T Consensus 261 g~~ig~~~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L----~~l--~~ 328 (396)
T PRK04073 261 VFPISCVAANRDILGVFTPG------SHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQL----KEI--DN 328 (396)
T ss_pred CCcceEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----Hhh--cC
Confidence 89999999999999988642 4778999999999999999999977777777777666666544 332 34
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+.+++|.|+|+++++... +..+.+.|+++||++.+.+ +.+||+||+++|+|++|+++++|++++
T Consensus 329 ~~i~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 329 PMIKEVRGRGLFIGVELNEP----------ARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred CcccceecceEEEEEEecch----------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 66788999999999998632 4678889999999998865 799999999999999999999998875
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=501.00 Aligned_cols=373 Identities=22% Similarity=0.323 Sum_probs=312.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+++||.||+ +|+|+.+|+|++++|| +||+|++|+++|++++.+... .+.++...+|+++|+++
T Consensus 14 ~~~~~~--~~G~~~~d~dG~----~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~ 85 (389)
T PRK01278 14 DLAFER--GEGVWLIDEDGE----RYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVEN 85 (389)
T ss_pred CceEEe--eecCEEEECCCC----EEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHhh
Confidence 567776 788999999999 9999999999999999 899999999999998766542 35789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++|+|++||+|||++|+|+| |.|+...|. ++ |++||+++++|||++.+++++++.+.++..
T Consensus 86 ~~---~~~v~~~~sGseA~~~al~~a-r~~~~~~G~-~~-----------r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 149 (389)
T PRK01278 86 SF---ADKVFFTNSGAEAVECAIKTA-RRYHYGKGH-PE-----------RYRIITFEGAFHGRTLATIAAGGQEKYLEG 149 (389)
T ss_pred CC---CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC-CC-----------CCEEEEECCCcCCCcHHHHhccCChhhccc
Confidence 76 479999999999999999999 567655554 23 378999999999999999999876544321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. . +++.++++| | .+.+++.+.
T Consensus 150 ~--------~~~----~----~~~~~~~~~--------------------------d--------~~~l~~~l~------ 173 (389)
T PRK01278 150 F--------GPL----V----PGFDQVPFG--------------------------D--------IEALKAAIT------ 173 (389)
T ss_pred C--------CCC----C----CCceEeCCC--------------------------C--------HHHHHHhhC------
Confidence 1 000 0 111222222 1 134555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ ++++|+.+++++|+++|+++|++||++||+|||||||||+|++++++++++.||++||||++++|
T Consensus 174 --~~~~avivep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G- 249 (389)
T PRK01278 174 --PNTAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG- 249 (389)
T ss_pred --CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCC-
Confidence 37999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+++||++||+++++++++|++++++++.++++++++++++.+ .++.+.++
T Consensus 250 ~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l----~~l~~~~~ 319 (389)
T PRK01278 250 FPLGACLATEEAAKGMTP------GTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL----EGLVDRFP 319 (389)
T ss_pred cceEEEEEcHHHHhccCC------CCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 899999999999988754 24789999999999999999999987777888888888877755 33445677
Q ss_pred -CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 -TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 -~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.+++|.|+++++++..+ +..+++.|+++||++.|.+ +.+||.||+++++++|++++++|++++++
T Consensus 320 ~~~~~v~g~G~~~~i~~~~~----------~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 320 DVIEEVRGKGLLLGLKCVVP----------NRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred CceeeEecccEEEEEEEecC----------HHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 7889999999999998532 4678999999999999876 89999999999999999999999998865
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=498.33 Aligned_cols=398 Identities=25% Similarity=0.340 Sum_probs=323.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+++||.||+ +|||+.+|+|++++|| +||+|++|+.+|++++.+..+..+.+++..+|+++|++.
T Consensus 24 p~~~~~--~~G~~l~d~dG~----~~lD~~~g~~~~~lGh-~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 96 (425)
T PRK08088 24 PIFADR--AENCRVWDVEGR----EYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQK 96 (425)
T ss_pred CceEEe--eeeCEEEeCCCC----EEEEcCCchhhcCCCC-CCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999999887654445688999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.|.++.++++|++||+||||.|||+| |.| ++| .+||+|+++|||+|.+++++++...
T Consensus 97 ~~~~~~~~~~f~~sGsea~e~Alkla-r~~-------~~r-----------~~iv~~~~~yHG~~~~~~~~~~~~~---- 153 (425)
T PRK08088 97 VPGDFAKKTLLVTTGSEAVENAVKIA-RAA-------TKR-----------SGVIAFTGAYHGRTHYTLALTGKVN---- 153 (425)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHH-------hCC-----------CeEEEECCccCCccHHHHHhhCCCC----
Confidence 87653469999999999999999999 566 343 6899999999999999999876321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
++..+++++ + .++.++++|..+ ++. + .+.+.+.+++.+++ ..
T Consensus 154 ---~~~~~~~~~--~------~~~~~~~~p~~~----------------------~~~-~-~~~~~~~l~~~l~~---~~ 195 (425)
T PRK08088 154 ---PYSAGMGLM--P------GHVYRALYPCPL----------------------HGV-S-EDDAIASIERIFKN---DA 195 (425)
T ss_pred ---ccccCCCCC--C------CCcEEcCCCccc----------------------cCc-c-HHHHHHHHHHHHHh---cc
Confidence 111222211 1 123344444322 010 0 11224556666642 12
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++|+||+||+ |+++|+++++++|+++|+++|++||+++|.|||++||||+|.+++++++++.|||++|||++++|
T Consensus 196 ~~~~~aavi~Epi-~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 273 (425)
T PRK08088 196 APEDIAAIIIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG- 273 (425)
T ss_pred CCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-
Confidence 4578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||+++|++|+++.++|+.++++++.+++++.++++++.+ .++..++|
T Consensus 274 ~rig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l----~~l~~~~~ 343 (425)
T PRK08088 274 FPLAGVTGRAEVMDAIAPG------GLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL----LAIAEKHP 343 (425)
T ss_pred CcceeeEecHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 8999999999999988642 3778999999999999999999977778888888777777644 45566788
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+..++|.|+|+++++.++.....+....+..+...|+++||++.+. ++.+|+.||+.+++++|++.+++|.+++.+
T Consensus 344 ~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 344 EIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 88999999999999996542111122345778999999999988764 389999999999999999999999999875
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 424 ~ 424 (425)
T PRK08088 424 A 424 (425)
T ss_pred h
Confidence 4
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=495.58 Aligned_cols=387 Identities=19% Similarity=0.284 Sum_probs=307.4
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.+|++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|+++..+. .+.++...+|+|+|++.
T Consensus 31 p~~~~~--~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~---~~~~~~~~~lae~l~~~ 100 (423)
T TIGR00713 31 PFFVAR--GKGAYLYDVDGN----EYIDYVLSWGPLILGH-AHPRVVEAVKEALERGTSY---GAPTEAEILLAKEIISR 100 (423)
T ss_pred CeeEEe--ccCCEEEeCCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhCCcC---CCCCHHHHHHHHHHHHh
Confidence 566776 889999999999 9999999999999999 8999999999999986542 35688899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++. .++|+|++|||||||+|+|+| |.| +|| .+||+++++|||++.+++++++......
T Consensus 101 ~~~--~~~v~~~~sGseA~e~Alk~a-r~~-------~gr-----------~~ii~~~~~yhG~~~~~~~~~~~~~~~~- 158 (423)
T TIGR00713 101 VPS--VEMVRFVNSGTEATMSAVRLA-RGY-------TGR-----------DKIIKFEGCYHGHHDALLVKAGSGAATL- 158 (423)
T ss_pred CCc--ccEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCCCCCChhhhhccccCccccc-
Confidence 875 379999999999999999999 566 354 7899999999999887777654321110
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
..++... . +.... ... +.+| .+| .+.+++.+++
T Consensus 159 -~~~~~~~----~--~~~~~-~~~--~~~~------------------------~~d--------~~~l~~~i~~----- 191 (423)
T TIGR00713 159 -GLPTSPG----V--PEDFA-KLT--LVLP------------------------YND--------LEALEEVFEE----- 191 (423)
T ss_pred -CCCCCCC----C--Ccccc-cce--EEeC------------------------CCC--------HHHHHHHHHH-----
Confidence 0011000 0 00000 000 0111 012 2445666642
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||||| |+|.+|+++++++.||++||||++++|
T Consensus 192 ~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G- 268 (423)
T TIGR00713 192 YGEEIAGVIVEPV-AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG- 268 (423)
T ss_pred cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCC-
Confidence 2468999999998 9999999988999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... .+.+++||++||++|++++++|+.++++++.++++++++++++.+ .+.+.+++
T Consensus 269 ~pig~v~~~~~i~~~~~~~~---~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 341 (423)
T TIGR00713 269 LPVGAFGGRREIMERLAPEG---PVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGL----SEVLEDTG 341 (423)
T ss_pred CceeeeeEHHHHHHhhCcCC---CeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----HHHHHhcC
Confidence 89999999999999986421 245789999999999999999999988778888888888887755 45566788
Q ss_pred CeeEecccceEEEEEEccCCcCC-----CCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNA-----GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~-----~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.+++|.|+|+++++..+.... .........++..|+++||++.+.+ +.++++|+ +|+++|++++++|+++
T Consensus 342 ~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~t~~~i~~~~~~l~~~ 419 (423)
T TIGR00713 342 IPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--HTEEDIENTIEAAEEV 419 (423)
T ss_pred CCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--CCHHHHHHHHHHHHHH
Confidence 88899999999999997542110 0112335578889999999998754 56788765 8999999999999998
Q ss_pred HHHH
Q 002941 850 LEEF 853 (863)
Q Consensus 850 l~~l 853 (863)
++++
T Consensus 420 l~~~ 423 (423)
T TIGR00713 420 FAEL 423 (423)
T ss_pred HhhC
Confidence 8653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=494.62 Aligned_cols=387 Identities=20% Similarity=0.285 Sum_probs=308.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ ++|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|+++..+ ..+.++...+|+++|+++
T Consensus 33 ~~~~~~--a~G~~l~d~dG~----~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~~~~---~~~~~~~~~~la~~L~~~ 102 (426)
T PRK00062 33 PRFIER--AKGAYLYDVDGN----EYIDYVGSWGPMILGH-AHPEVVEAVIEAAEKGLS---FGAPTELEVELAELVIEL 102 (426)
T ss_pred CeEEEe--CcCCEEEeCCCC----EEEEcccchhhhhcCC-CCHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999998432 245788999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|. .++|+|++||+||||+|+|+| +.| +|| ++||+|+++|||+|.++.+.++.....
T Consensus 103 ~~~--~~~v~~~~sGseA~e~Aik~a-~~~-------~g~-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~-- 159 (426)
T PRK00062 103 VPS--IEMVRMVNSGTEATMSAIRLA-RGY-------TGR-----------DKIIKFEGCYHGHADSLLVKAGSGAAT-- 159 (426)
T ss_pred CCC--CCEEEEecCHHHHHHHHHHHH-HHH-------hCC-----------CeEEEEcCccCCchhhhhhccCccccc--
Confidence 863 579999999999999999999 555 343 789999999999998887775432111
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+..++... ...+. .+.. ..+| .+| .+.+++.+++
T Consensus 160 ~~~~~~~~----~~~~~---~~~~--~~~~------------------------~~d--------~~~l~~~i~~----- 193 (426)
T PRK00062 160 LGLPDSPG----VPEDF---AKHT--LTAP------------------------YND--------LEAVEELFEE----- 193 (426)
T ss_pred cCCCCCCC----CCccc---ccce--EEcC------------------------CCC--------HHHHHHHHHh-----
Confidence 00011000 00000 0000 0111 022 2445555642
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ||++|+++++++||++|+++|++||+++|+||||||| |+|.+|+++++++.||++++||++++|
T Consensus 194 ~~~~~aaiivEpv-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G- 270 (426)
T PRK00062 194 YGDEIAAVIVEPV-AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG- 270 (426)
T ss_pred CCCcEEEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC-
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... .+.+.+||++||++|++++++|++++++++++++.++++++++.| .+...+++
T Consensus 271 ~p~ga~~~~~~i~~~~~~~~---~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 343 (426)
T PRK00062 271 LPVGAFGGRREIMEQLAPLG---PVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGL----KEAAKKAG 343 (426)
T ss_pred CcceeeeEHHHHHHhhccCC---CceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHcC
Confidence 89999999999999986321 245778999999999999999999988788888888888887754 45566788
Q ss_pred CeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.++||.|+|+++++.++... .......+..+...|+++||++.+.+ +.+++ ++++|++||++++++|+++
T Consensus 344 ~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~--~~~~t~~ei~~~~~~l~~~ 421 (426)
T PRK00062 344 IPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFV--SAAHTDEDIEKTLEAARKA 421 (426)
T ss_pred CceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceee--eccCCHHHHHHHHHHHHHH
Confidence 8889999999999999754211 00122345789999999999999876 55554 5899999999999999999
Q ss_pred HHHH
Q 002941 850 LEEF 853 (863)
Q Consensus 850 l~~l 853 (863)
++++
T Consensus 422 l~~~ 425 (426)
T PRK00062 422 FAAL 425 (426)
T ss_pred HHhh
Confidence 8764
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-54 Score=487.28 Aligned_cols=379 Identities=22% Similarity=0.321 Sum_probs=308.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+++||.||+ +|||++|++|+.++|| +||+|++|+.+|++++.+... .+.+++..+|+++|+++
T Consensus 20 ~~~~~~--~~g~~~~~~~g~----~~lD~~s~~~~~~~Gh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 91 (401)
T TIGR01885 20 PVVFSK--AEGVHVWDVEGK----RYLDFLSAYSAVNQGH-CHPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKL 91 (401)
T ss_pred CceEEe--eecCEEEeCCCC----EEEEcccCHhhccCCC-CCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhh
Confidence 345555 788999999999 9999999999999999 899999999999999876542 34789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhc-cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~-G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++++|++||+||||+|||+| |.|+.++ |..+| +++|++++++|||++.+++++++.+.+..
T Consensus 92 ~~---~~~~~~~~SGs~A~e~ai~~a-~~~~~~~~~~~~~-----------~~~i~~~~~~yhg~~~~~~~~~~~~~~~~ 156 (401)
T TIGR01885 92 FG---YDKVLPMNTGAEAVETAIKLA-RKWGYKVKGIPEN-----------QAIIVSAKGNFHGRTLGAISMSTDPDSRT 156 (401)
T ss_pred cC---CCEEEEeCccHHHHHHHHHHH-HHHhhhhcCCCCC-----------CCEEEEECCCcCcccHHHHhCcCCccccc
Confidence 87 479999999999999999999 5664332 32223 37899999999999999999987543321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+++.. + ++.+++++ | .+.+++.+++
T Consensus 157 --------~~~~~~--~------~~~~~~~~--------------------------d--------~~~le~~l~~---- 182 (401)
T TIGR01885 157 --------NFGPYV--P------GFKKIPYN--------------------------N--------LEALEEALED---- 182 (401)
T ss_pred --------ccCCCC--C------CceEeCCC--------------------------C--------HHHHHHHHHh----
Confidence 111110 1 11222221 1 2445666643
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++++||+||+ ++++|++.|+++||++|+++|++||+++|+|||||||||+|++++++++++.||++|+||+++||
T Consensus 183 -~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g 260 (401)
T TIGR01885 183 -HGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGG 260 (401)
T ss_pred -cCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccCC
Confidence 2467999999998 99999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+... .+.+||+++|++|++++++|++++++++.++++++++++++.| .++ .+
T Consensus 261 ~~~ig~v~~~~~i~~~~~~~------~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L----~~l--~~ 328 (401)
T TIGR01885 261 VYPVSAVLADDDVMLTIKPG------EHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQL----KKL--PK 328 (401)
T ss_pred CCCcEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----Hhc--cC
Confidence 89999999999999987642 3668999999999999999999987677777777666666543 332 34
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+.+++|.|+|+++++..+.. ...+.++++.|.++||++.|.+ +.+||.||+.+|+++|++++++|++++
T Consensus 329 ~~~~~~~g~g~~~~i~~~~~~~-----~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 329 PIITEVRGRGLLNAIVIDESKT-----GRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred CceeEEeecCeeEEEEeccCcc-----hhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 6778899999999999964320 1236788999999999998875 899999999999999999999998876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=490.15 Aligned_cols=377 Identities=19% Similarity=0.228 Sum_probs=288.5
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|+++++ |+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+++|++++.+. ...++...+|+++|++
T Consensus 30 ~p~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~~ 99 (431)
T PRK06209 30 APGFIQR--GSGAHVWDVDGN----EYIEYGMGLRAVGLGH-AYPPVVEAVREALQDGCNF---TRPSAIELDAAESFLE 99 (431)
T ss_pred CCeEEEe--ccCCEEEeCCCC----EEEEccccccchhcCC-CCHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHHH
Confidence 4566766 889999999999 9999999999999999 8999999999999987542 2456667789999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe-cCCCccCccccceecCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~-~~sYHG~t~gals~t~~~~~~ 533 (863)
++|. .++|+|+||||||||+|||+| |.| +|| ++|+.+ .++|||...+....+... .
T Consensus 100 ~~p~--~~~v~f~~sGseA~e~AlklA-r~~-------tgr-----------~~i~~~~~~~~h~~~~~~~g~~~~~--~ 156 (431)
T PRK06209 100 LIDG--ADMVKFCKNGSDATSAAVRLA-RAY-------TGR-----------DLVARCADHPFFSTDDWFIGTTPMS--A 156 (431)
T ss_pred hCCc--cceEEEecCHHHHHHHHHHHH-HHH-------hCC-----------CeEEEeccCccccccccccccCCCC--C
Confidence 9874 579999999999999999999 667 464 789999 788887432211100000 0
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
+ .+. ...+ .+. .|+ .+| .+.+++.+++
T Consensus 157 ~---------------~~~-----~~~~--~~~------------~~~--------~~d--------~~~l~~~l~~--- 183 (431)
T PRK06209 157 G---------------IPA-----SVSA--LTV------------TFR--------YND--------IASLEALFED--- 183 (431)
T ss_pred C---------------CCh-----hHhc--ccc------------ccC--------CCC--------HHHHHHHHHh---
Confidence 0 000 0000 000 010 122 2456666653
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+++++|+||+||+ +|+ .++++||++|+++|++||++||+|||||||++++ +++.+++|+.|||+|+||+|||
T Consensus 184 --~~~~~aavi~Epv-~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lgg 255 (431)
T PRK06209 184 --HPGRIACVILEPA-TAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALGN 255 (431)
T ss_pred --CCCCEEEEEEccc-cCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhcC
Confidence 3568999999998 775 7889999999999999999999999999997753 3344568999999999999999
Q ss_pred CCCCceeeeccHHHHHh--hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLATNAVFDS--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~--l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
| +|+|++++++++++. +......+.+.|++||++||++||+++++|++++++++.++++++++++++.| .++.
T Consensus 256 G-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L----~~~~ 330 (431)
T PRK06209 256 G-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGV----NEAA 330 (431)
T ss_pred C-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH----HHHH
Confidence 9 799999999999997 32111123466899999999999999999999998888899999988888755 4455
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+++.+.++|+.|+++.+++................+.+.|+++||++.| + ..+..+|++||++++++|+++++
T Consensus 331 ~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~----l--~is~~ht~~dId~~l~~l~~~l~ 404 (431)
T PRK06209 331 AEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS----L--VVSYAHGDADIERTIDAVHGALG 404 (431)
T ss_pred HhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc----c--cccccCCHHHHHHHHHHHHHHHH
Confidence 67888889999999999988743211112233445788999999998743 2 22457799999999999999999
Q ss_pred HHHHH
Q 002941 852 EFDKV 856 (863)
Q Consensus 852 ~l~~~ 856 (863)
++.+.
T Consensus 405 ~~~~~ 409 (431)
T PRK06209 405 VYRKA 409 (431)
T ss_pred HHHHH
Confidence 88554
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-53 Score=483.70 Aligned_cols=378 Identities=23% Similarity=0.331 Sum_probs=310.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+|+||.||+ +|+|+++|+|++++|| +||+|.+|+.+|++++.+... .+.+++..+|+++|+++
T Consensus 23 ~~~~~~--~~G~~~~d~dG~----~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 94 (403)
T PRK05093 23 EFIPVR--GEGSRVWDQQGK----EYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLIDA 94 (403)
T ss_pred CeeEEE--eecCEEEeCCCC----EEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHhh
Confidence 456665 788999999999 9999999999999999 999999999999998765432 35688899999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||+||||+|+|+| |.|+..++. ++ +.+||+++++|||+|.+++++++.+.++.
T Consensus 95 ~~---~~~~~~~~sGseA~e~a~kla-r~~~~~~~~-~~-----------~~~ii~~~~~~HG~~~~~~~~~~~~~~~~- 157 (403)
T PRK05093 95 TF---AERVFFANSGAEANEAAFKLA-RRYACDRHG-PE-----------KTEIIAFHNSFHGRTLFTVSVGGQPKYSD- 157 (403)
T ss_pred CC---CCEEEEeCchHHHHHHHHHHH-HHHHhhcCC-CC-----------CCeEEEEcCCcCCchhhhHhhcCChhhhh-
Confidence 75 479999999999999999999 667543321 12 37899999999999999999887543321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+..+. + .++.+++++ | .+.+++.+.
T Consensus 158 -------~~~~~--~------~~~~~~~~~--------------------------d--------~~~l~~~l~------ 182 (403)
T PRK05093 158 -------GFGPK--P------ADITHVPFN--------------------------D--------LAAVKAVID------ 182 (403)
T ss_pred -------cCCCC--C------CCcEEeCCC--------------------------C--------HHHHHHHhc------
Confidence 11110 0 112222222 2 134455452
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ +++||+++++++|+++|+++|++||+++|+|||++||||+|++++++++++.||+++|||++++|
T Consensus 183 --~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 258 (403)
T PRK05093 183 --DHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG- 258 (403)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCC-
Confidence 36899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||+++|++|++++++|++++++++.++++++.+++.+.| .+...+++
T Consensus 259 ~rig~vv~~~~i~~~l~~~------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~ 328 (403)
T PRK05093 259 FPIGAMLTTAEIASHFKVG------THGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL----QKINQKYG 328 (403)
T ss_pred cceEEEEEcHHHHhhcCCC------CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999999988642 4678999999999999999999987777788887777777655 33334567
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+..+++.|+++++++.... ...+.+++..|+++||++.+.| +.+|+.|++++++++|++++++|+++++++
T Consensus 329 ~~~~~~~~G~~~~~~l~~~~------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 329 VFSEIRGMGLLIGAELKPQY------KGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CeEeEeeCceEEEEEecCcc------hhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 77899999999999996421 0135678999999999999876 899999999999999999999999988754
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=477.16 Aligned_cols=371 Identities=22% Similarity=0.253 Sum_probs=307.5
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ ++|+++||.||+ +|||+.+|+|++++|| +||+|++|+.+|++++++.. ..+.++...+|+++|++
T Consensus 25 ~~~~~~~--~~G~~~~d~dg~----~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 25 PPLALVR--GEGAVVWDVDGK----EYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVE 96 (398)
T ss_pred CCceEEE--eeecEEEECCCC----EEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHH
Confidence 3567776 788999999999 9999999999999999 89999999999999987653 34678888999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.++....++++|++||+|||+.|+|+++ .+ || .+||.++++|||++.+++++++...+..
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~~-~~--------g~-----------~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 156 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLAR-LT--------GR-----------TKIVAAEGGFHGRTMGALALTGQPAKRA 156 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHHH-HH--------CC-----------CeEEEECCCcCCccHHHHhccCCccccc
Confidence 9874324699999999999999999994 22 43 6899999999999999998876443321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+ .+. . ..+..++++ | .+.+++.+.
T Consensus 157 ~~--------~~~-~-------~~~~~~~~~--------------------------d--------~~~l~~~~~----- 181 (398)
T PRK03244 157 PF--------EPL-P-------GGVEHVPYG--------------------------D--------VDALAAAVD----- 181 (398)
T ss_pred CC--------CCC-C-------CCceEeCCC--------------------------C--------HHHHHHhhc-----
Confidence 10 000 0 011112211 1 133444442
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++|++||+ |+++|+++|+++|+++|+++|++||++||+|||+|||||+|++++++++++.||++||||++++|
T Consensus 182 ---~~~~aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G 257 (398)
T PRK03244 182 ---DDTAAVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGG 257 (398)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCC
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+.+||++||++|++++++|++++++++.+++.++++++++.| .++ .+
T Consensus 258 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L----~~~--~~ 324 (398)
T PRK03244 258 -LPIGACLAFGPAADLLTP------GLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGI----EAL--GH 324 (398)
T ss_pred -cccEEEEEcHHHHhhccC------CCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----Hhc--CC
Confidence 899999999999998754 24788999999999999999999987778888888777776644 222 36
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.+..++|.|+++++++..+ .+..+.+.|+++||++++.+ +.+|+.||+.++++||++++++|++++.++
T Consensus 325 ~~~~~v~g~g~~~~i~~~~~---------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 325 PLVDHVRGRGLLLGIVLTAP---------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDAA 395 (398)
T ss_pred CceeeEeeccEEEEEEEecc---------HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999632 35678999999999999865 899999999999999999999999999765
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
.
T Consensus 396 ~ 396 (398)
T PRK03244 396 A 396 (398)
T ss_pred c
Confidence 4
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=469.43 Aligned_cols=365 Identities=24% Similarity=0.312 Sum_probs=302.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+|+||.||+ +|||++|++|++++|| +||+|++|+.+|++++.+.. ..+.++...+|+++|++.
T Consensus 12 ~~~~~~--~~G~~~~d~~G~----~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 83 (377)
T PRK02936 12 PIDIVK--GKGTKVTDNNGK----TYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAEN 83 (377)
T ss_pred CceEEE--eecCEEEeCCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHhc
Confidence 456666 788999999999 9999999999999999 89999999999999875543 235688899999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.| .++++|++||+|||++|+|+| +.| +|| .+||+++++|||++.+++++++...++.
T Consensus 84 ~~---~~~~~~~~sG~~a~~~A~~~a-~~~-------~g~-----------~~vi~~~~~~Hg~~~~~~~~~~~~~~~~- 140 (377)
T PRK02936 84 SA---GDLVFFCNSGAEANEAALKLA-RKH-------TGK-----------SKIVTFEQSFHGRTFGTMSATGQEKIKE- 140 (377)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCCCcHHhhhccCCccccc-
Confidence 76 368999999999999999999 555 343 7899999999999999999876543321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+++.. +++.+++++ | .+.+++.+.
T Consensus 141 -------~~~~~~--------~~~~~~~~~--------------------------d--------~~~l~~~~~------ 165 (377)
T PRK02936 141 -------GFGPLL--------PGFTHVPFN--------------------------D--------IKALKEVMN------ 165 (377)
T ss_pred -------cCCCCC--------CCceEeCCC--------------------------C--------HHHHHHhcc------
Confidence 111110 111112211 1 133444442
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++||+||+ ++++|+.+++++|+++|+++|++||+++|+||||+||||+|.+++++++++.||++||||++++|
T Consensus 166 --~~~~~ii~e~i-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G- 241 (377)
T PRK02936 166 --EEVAAVMLEVV-QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG- 241 (377)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCC-
Confidence 45899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||++||++|++++++|+.++++++++++.++++++++.| .+.+.+++
T Consensus 242 ~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~ 311 (377)
T PRK02936 242 IPVGAMIGKKELGTAFGPG------SHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKL----QEELEHLE 311 (377)
T ss_pred CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999999988642 3678999999999999999999876677888888887777654 44455678
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+++.+++.++ ...+.+.|+++||++.|.+ +.+||.||+.++++++++++++|++++
T Consensus 312 ~~~~v~~~g~~~~i~~~~~----------~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 312 CVKNIRGKGLMIGIECTEE----------VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred cEEeEeecceEEEEEecch----------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 8888999999999998642 4568889999999999877 899999999999999999999998764
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=468.49 Aligned_cols=375 Identities=20% Similarity=0.266 Sum_probs=305.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ ++|+|+||.||+ +|||+++|+|+.++|| +||+|++|+.+|++++.+... .+.++...+|+++|+++
T Consensus 24 ~~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~~Gh-~~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 95 (401)
T PRK00854 24 DVVLTR--GEGVWVWDTDGN----RYLDCLSAYSAVNQGH-CHPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAAL 95 (401)
T ss_pred CceEEe--eeeCEEEECCCC----EEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 345655 788999999999 9999999999999999 899999999999999887542 45688999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh-hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++++|+|||+||||.|||+| +.|++ .+|.++|| .+||++.++|||++.+++++++.+.++.
T Consensus 96 ~~---~~~~~~~~SGs~A~e~al~~a-~~~~~~~~g~~~~~-----------~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 96 TG---SHKVLPMNSGAEAVETAIKAV-RKWGYEVKGVPEGQ-----------AEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCCCCCC-----------ceEEEECCCcCCccHHHHhccCCccccc
Confidence 87 369999999999999999999 55643 23433333 7899999999999999888876543322
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. ++++ . .++.+++++ | .+.+++.+.
T Consensus 161 ~--------~~~~--~------~~~~~~~~~--------------------------d--------~~~le~~i~----- 185 (401)
T PRK00854 161 G--------FGPF--T------PGFRVVPFG--------------------------D--------AEALEAAIT----- 185 (401)
T ss_pred c--------CCCC--C------CCeEEeCCC--------------------------C--------HHHHHHHhC-----
Confidence 1 1111 0 122223222 1 134555552
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++||+||+ +|++|.+.++++||++|+++|++||++||+||||+||||+|.+++.+++|+.||++++||+++||
T Consensus 186 ---~~~~aii~e~~-~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg 261 (401)
T PRK00854 186 ---PNTVAFLVEPI-QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGG 261 (401)
T ss_pred ---CCeEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+.. ..++.||+++|++|++++++|+.++++++.++++++++++.+.|. +. ..
T Consensus 262 ~~~ig~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~----~~--~~ 329 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLKP------GQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLR----SI--RS 329 (401)
T ss_pred ccCeEEEEEcHHHHhcccC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hh--cc
Confidence 8999999999999998753 247789999999999999999998776677777777777766443 22 22
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.+++|.|+|+.+++..+. .....+++.|+++||++.+.+ +.+|++||+.+++++|++++++|++++.
T Consensus 330 ~~~~~~~g~g~~~~i~~~~~~-------~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 330 NIVREVRGRGLMLAVELEPEA-------GGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred CceEEEeccceEEEEEEecCc-------hhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 446778999999999886432 135678999999999998764 8999999999999999999999998763
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=461.74 Aligned_cols=382 Identities=23% Similarity=0.332 Sum_probs=307.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+|+||.||+ +|||+++|+|+.++|| +||+|++|+.+|++++.+.+. .+.++...+++++|+++
T Consensus 14 ~~~~~~--~~G~~~~d~dg~----~~lD~~~~~~~~~~Gh-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 85 (400)
T PTZ00125 14 PVVLKR--GKGVFVWDVEGK----KYYDFLSAYSAVNQGH-CHPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITDL 85 (400)
T ss_pred CccEEe--eecCEEEeCCCC----EEEEcccCHhhccCCc-CCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHhC
Confidence 446665 788999999999 9999999999999999 899999999999999887653 34577888888888887
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHH-hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~-~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.+ .++++|++||++|||+|||++ +.|+ ..+|.+++ +.+||+++++|||++.+++++++...+..
T Consensus 86 ~~---~~~~~~~~SGs~A~e~al~~~-~~~~~~~~~~~~~-----------~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~ 150 (400)
T PTZ00125 86 FG---YDKVLPMNSGAEAGETALKFA-RKWGYEVKGIPEN-----------QAKIIFCNGNFSGRTIGACSASTDPKCYN 150 (400)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCCCCC-----------CCeEEEECCCcCCccHHHHhhcCCcchhc
Confidence 65 579999999999999999999 4443 22222112 37899999999999999999876432211
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+.++. + ++..+++ +| .+.+++.++
T Consensus 151 --------~~~~~~--~------~~~~~~~--------------------------~d--------~~~le~~l~----- 175 (400)
T PTZ00125 151 --------NFGPFV--P------GFELVDY--------------------------ND--------VEALEKLLQ----- 175 (400)
T ss_pred --------cCCCCC--C------CceEeCC--------------------------CC--------HHHHHHHhC-----
Confidence 111110 0 1111111 12 244555553
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++|++||+ ++++|++.++++|+++|+++|++||++||+|||++||||+|++++.+++++.||++++||++++|
T Consensus 176 --~~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~g 252 (400)
T PTZ00125 176 --DPNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSGG 252 (400)
T ss_pred --CCCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccCC
Confidence 246999999998 99999999999999999999999999999999999999999988988899999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|+|++++++++++.+... .+..||+++|++++++.++|++++++++.+++.++++.+++. +.+++..+
T Consensus 253 ~~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~----l~~l~~~~ 322 (400)
T PTZ00125 253 LYPISAVLANDDVMLVIKPG------EHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDG----LKELLKKS 322 (400)
T ss_pred CcCcEEEEEcHHHHhhccCC------CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----HHHHHhcC
Confidence 77999999999999987642 366789999999999999999997777777777766666654 44455667
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+..+++.|+++++++..+. ......+++.|+++||++.|.+ +.+||.|++.++++++++++++|++++.++
T Consensus 323 ~~~~~~~~~g~~~~v~~~~~~------~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 323 PWVKEIRGKGLLNAIVFDHSD------GVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred CCeEEEecccEEEEEEEccCc------chHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 788889999999999986421 1235678899999999999865 899999999999999999999999998876
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
+
T Consensus 397 ~ 397 (400)
T PTZ00125 397 D 397 (400)
T ss_pred h
Confidence 4
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=445.82 Aligned_cols=363 Identities=23% Similarity=0.272 Sum_probs=297.7
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.+|++ ++|+|+||.||+ +|||+.||+|++++|| ||+|++|+.+|++++.+.. ..+.++...+|+++|+..
T Consensus 12 ~~~~~~--~~G~~l~d~dg~----~~lD~~s~~~~~~lG~--~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 82 (375)
T PRK04260 12 AIEFVK--AEGNYLIDTDGK----KYLDFSSGIGVTNLGF--HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIGD 82 (375)
T ss_pred CceEEE--eeeCEEEeCCCC----EEEECCCCcccccCCC--CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhcC
Confidence 456766 788999999999 9999999999999998 7999999999999875543 235577788888888652
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+ ..+++|++||+|||+.|+|+| |.+ +|| .+||+++++|||++.+++++++...++..
T Consensus 83 -~---~~~~~~~~SGseA~~~Al~~a-r~~-------~~~-----------~~vv~~~~~yHg~~~~~~~~~~~~~~~~~ 139 (375)
T PRK04260 83 -K---DYLAFFCNSGAEANEAAIKIA-RKA-------TGK-----------QEIITFQNSFHGRTFGSMSATGQDKIKDG 139 (375)
T ss_pred -c---CCEEEEcCccHHHHHHHHHHH-HHh-------cCC-----------CeEEEECCCcCcccHHHHhccCCcccCCC
Confidence 1 246899999999999999999 555 343 68999999999999999998875433321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ ++. ++. +...+ .+| .+.+++.+
T Consensus 140 ----~----~~~--~~~------~~~~~--------------------------~~d--------l~~l~~~l------- 162 (375)
T PRK04260 140 ----F----GDG--VPH------FSYAI--------------------------FND--------LNSVKALV------- 162 (375)
T ss_pred ----C----CCC--CCC------eEEeC--------------------------CCC--------HHHHHHhc-------
Confidence 1 110 000 00000 022 23444444
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++++|++.++++||++++++|++||+++|+||+++||||+|.++.++.+++.||++||||+|++|
T Consensus 163 -~~~~a~vi~e~v-~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G- 239 (375)
T PRK04260 163 -NKNTAAVMLELV-QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANG- 239 (375)
T ss_pred -CCCeEEEEECCe-ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCC-
Confidence 246899999998 99999999999999999999999999999999999999999988988999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+.+||++||++|+++.++|+.++++++.++++++++++++.+ .+.+.+++
T Consensus 240 ~~ig~~~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 309 (375)
T PRK04260 240 VPVGAMLAKSSLGGAFGYG------SHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQL----QKALQDKE 309 (375)
T ss_pred cceEEEEEcHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 8999999999999887642 3778999999999999999999987788888888888888755 44556677
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+++++++..+ +..+.+.|+++||++.+.+ +.+|+.||+.++++++++++++|++++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 310 TVTTVRGLGYMIGIETTAD----------LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred CeeEEeccceEEEEEecCc----------HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 7889999999999999432 4578999999999998876 789999999999999999999998753
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=446.40 Aligned_cols=410 Identities=28% Similarity=0.390 Sum_probs=323.3
Q ss_pred hhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccc
Q 002941 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (863)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~ 434 (863)
+++++++|++++ ....|.++++ ++|.++||.||+ +|||+++|+|++++|| +||+|++|+.+|+++..+
T Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~~~--~~g~~~~d~dG~----~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~ 70 (413)
T cd00610 3 ERDRKVLWHGYT-----VRPYPLVIVR--AEGAYLYDVDGN----RYLDFLSGIGVLNLGH-NHPEVVEALKEQLAKLTH 70 (413)
T ss_pred chhhhhcccccc-----CCCCCceEEe--eecCEEEeCCCC----EEEEcCccHHhhccCC-CCHHHHHHHHHHHHhCcC
Confidence 456678899887 1134667776 788999999999 9999999999999999 899999999999988765
Q ss_pred ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecC
Q 002941 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (863)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~ 514 (863)
.....+.++...+|+++|++++|.+ .++++|++||+|||+.|++++ +.+ +++ .+||++++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~-~~~-------~~~-----------~~ii~~~~ 130 (413)
T cd00610 71 FSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAY-------TGR-----------KKIISFEG 130 (413)
T ss_pred ccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHH-------cCC-----------CeEEEECC
Confidence 5432236899999999999999853 689999999999999999999 445 232 78999999
Q ss_pred CCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 515 sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
+|||++.+++++++...+.+.+ .+.. ..+..++++..++ ...
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~-------------------~~~--- 172 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGGF------------GPLL----PGVLHVPYPYRYR-------------------PPA--- 172 (413)
T ss_pred CcCCccHHHHHhcCCccccccC------------CCCC----CCcEEeCCCcccc-------------------chh---
Confidence 9999999999887654333211 0000 1122233321110 000
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
. .....+.+++.+++ +++++++|++||+ ++++|.++++++|+++|+++|++||++||+|||++||||+|.+++
T Consensus 173 ~-~~~d~~~l~~~l~~-----~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~ 245 (413)
T cd00610 173 E-LADDLEALEEALEE-----HPEEVAAVIVEPI-QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFA 245 (413)
T ss_pred h-HHHHHHHHHHHHhc-----CCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhh
Confidence 0 11123556666642 3468999999997 999999999999999999999999999999999999999999989
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++++.||++++||++++| +|+|++++++++++.+.. ..+.+.+|++++|++++++.++|++++++++.+++.+
T Consensus 246 ~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~ 320 (413)
T cd00610 246 FEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPA----GPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAE 320 (413)
T ss_pred HhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhcc----CCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999 899999999999998721 1245778999999999999999999987777888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPC 833 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~ 833 (863)
+++++++.+. ++...++.+..+++.|.++.+.+.++.............+++.|+++||++.|. ++.+|+.|++.
T Consensus 321 ~~~~l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~ 396 (413)
T cd00610 321 LGEYLRERLR----ELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLI 396 (413)
T ss_pred HHHHHHHHHH----HHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCc
Confidence 8877777553 333445777888999999999997642111112235677899999999999987 48999999999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l 850 (863)
+|+++|++++++|++++
T Consensus 397 ~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 397 ITEEEIDEGLDALDEAL 413 (413)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=446.01 Aligned_cols=373 Identities=26% Similarity=0.368 Sum_probs=305.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ ++|+++||.||+ +|+|+.+|+|++++|| +||+|.+|+.+|+++..+.. ..+.++...+|+++|++.
T Consensus 22 ~~~~~~--~~G~~~~d~dg~----~~iD~~~g~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 93 (396)
T PRK02627 22 PIAFVR--GEGARLWDDDGK----EYLDFLAGIAVNNLGH-CHPKLVEAIQEQAAKLIHTS-NLYYIEPQEELAEKLVEL 93 (396)
T ss_pred CceEEe--eeeCEEEeCCCC----EEEECCccHHhccCCC-CCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhh
Confidence 456666 788999999999 9999999999999999 89999999999999876543 346789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||+||++.|+|++ +.+..+.+. .+.+|++++++|||.+.+++++++...++..
T Consensus 94 ~~---~~~v~~~~gg~eA~~~al~~a-~~~~~~~~~-------------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (396)
T PRK02627 94 SG---MDKVFFCNSGAEANEAAIKLA-RKYGHKKGI-------------EKPEIITAENSFHGRTLATLSATGQPKYQEG 156 (396)
T ss_pred cC---CCEEEECCCcHHHHHHHHHHH-HHHhcccCC-------------CCCeEEEECCCcCcccHHHHHhcCCcccccc
Confidence 65 589999999999999999999 556322221 1268999999999999999998875543321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. + .++..+++ +| .+.+++.+
T Consensus 157 ~--------~~~---~-----~~~~~~~~--------------------------~d--------~~~l~~~i------- 179 (396)
T PRK02627 157 F--------EPL---V-----EGFIYVPF--------------------------ND--------IEALKAAI------- 179 (396)
T ss_pred C--------CCC---C-----CCceEeCC--------------------------CC--------HHHHHHhc-------
Confidence 0 000 0 11111111 11 13344444
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++++|+.+++++|+++|+++|++||++||+||+++||||+|++++++.+++.||++||||++++|
T Consensus 180 -~~~~~~vii~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G- 256 (396)
T PRK02627 180 -TDKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGG- 256 (396)
T ss_pred -CCCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCC-
Confidence 247899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..+..||++||++|+++.++|+.++++++.++++++++++++.+ .++..++|
T Consensus 257 ~rig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~ 326 (396)
T PRK02627 257 VPIGAVLAKEKVADVFTP------GDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKL----RELLEKYP 326 (396)
T ss_pred cccEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 899999999999988753 23678999999999999999999877777788887777777654 44555677
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+..++|.|+++.+++.. ...+++..|+++||++.|.+ +.+|+.|++.++++++++++++|+++++++
T Consensus 327 ~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 327 GIKEVRGLGLMIGIELDR----------PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred CeeeeccCcEEEEEEecC----------cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 788899999999999832 15678999999999999876 789999999999999999999999988653
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=372.40 Aligned_cols=399 Identities=18% Similarity=0.168 Sum_probs=301.6
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHH-HHHhcc-ccc-CCCC-CChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGY-TAARFG-HVM-FPEN-VYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~-q~~~~~-~~~-~~~~-~~~~~~eLae~L~~~~p~~ 459 (863)
.-|.|++|+||| .+||..+.+.++++|| |||.++.++.. |+.+.. .-. ...+ ..+.+..|.+-|....|++
T Consensus 65 S~GNYlvDvDGN----~lLDvYsQIsSvplGY-n~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG 139 (484)
T KOG1405|consen 65 SIGNYLVDVDGN----RLLDVYSQISSVPLGY-NNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKG 139 (484)
T ss_pred hcCceEEecCCC----eeehhhhhhcccccCC-CCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcch
Confidence 467899999999 9999999999999999 89999999874 433321 111 0111 3455666666677788887
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHH-HhhccccccccCCC---------ccccccccEEEEecCCCccCccccceecCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKF-SFDHEVLVDFLGKD---------TTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~-~~~~G~~tgr~~~~---------~~~~~~r~~II~~~~sYHG~t~gals~t~~ 529 (863)
.+.|++.-+||.|||+|+|.|+-.| .+.+|.. | .++ .++.++.-.|++|+|+|||++++++|.|..
T Consensus 140 -~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~-~--~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~S 215 (484)
T KOG1405|consen 140 -QKQVITMLCGSCANENAYKTAFIWYRAKERGQA-G--FSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHS 215 (484)
T ss_pred -HHHHHHHhccccccHHHHHHHHHHHHhhcCCCC-C--CCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccC
Confidence 7899999999999999999996433 1333321 1 111 033446788999999999999999999876
Q ss_pred CCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc-cCchhHHHHHHHHHHHHH
Q 002941 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE-RDSSDLASIYSSYISQNL 608 (863)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~le~~l 608 (863)
...++.. -+-|++|-. ++|.. +.++++. .....-.+.|++.+|+.+
T Consensus 216 KpIHKld--------iPaFdWPiA---------~fP~y----------------kYPLdenv~~N~ked~~Cl~~Ve~li 262 (484)
T KOG1405|consen 216 KPIHKLD--------IPAFDWPIA---------PFPRY----------------KYPLDENVAENKKEDQGCLAEVEDLI 262 (484)
T ss_pred ccccccC--------CCCCCCCCC---------CCccc----------------cCChhhhhhhhhhhhhhHHHHHHHHH
Confidence 5544321 122333322 22311 1112211 001122345778888888
Q ss_pred hcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC--CCcEEE
Q 002941 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIAC 686 (863)
Q Consensus 609 ~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDivt 686 (863)
... ..+...|||+|+||| |++||....+++|++.||++|+|||+.+|+||||||-|-||++|++|||++ .||+||
T Consensus 263 ~~~--~~k~~pVaaiIvEPI-QsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vT 339 (484)
T KOG1405|consen 263 VKY--RKKKKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVT 339 (484)
T ss_pred HHH--hhcCCCeEEEEeech-hccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCcccee
Confidence 653 123357999999997 999999999999999999999999999999999999999999999999998 589999
Q ss_pred ecccc-CCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLL-TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgL-ggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
|||-+ +|||+ -.+ .|+... ++.+..||-|+|.-..-..+++++++++++.+++...++.|..
T Consensus 340 FSKK~q~gGff------h~~----~frpn~---pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~---- 402 (484)
T KOG1405|consen 340 FSKKFQTGGFF------HDE----EFRPNE---PYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLK---- 402 (484)
T ss_pred hhhhhhcCccc------cCc----ccCCCc---hHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----
Confidence 99977 57762 122 233221 2346789999999999999999999998888888777777665
Q ss_pred HHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHH
Q 002941 766 ELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 766 ~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v 843 (863)
+|.++.+++|. +..+||+|.|+++++.... ....+...++-+|+-++.+| ..+||.|.++..+.+.+-++
T Consensus 403 gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~~--------~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l 474 (484)
T KOG1405|consen 403 GLLELQAKYPGKINNLRGRGTFIAWDCPSGS--------IRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFL 474 (484)
T ss_pred HHHHHHHhCchhhhcccccceEEEEeCCChH--------HHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHH
Confidence 55778889985 7889999999999998764 56788999999999999887 78999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
+++++.+..
T Consensus 475 ~~~~k~l~~ 483 (484)
T KOG1405|consen 475 DIFDKILAG 483 (484)
T ss_pred HHHHHHhcc
Confidence 999998764
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=373.88 Aligned_cols=369 Identities=26% Similarity=0.383 Sum_probs=292.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ ++|.++||.||+ +|+|+++|+|++++|| +||.|.+|+.++++++.+.. ..+.++...+|+++|++.
T Consensus 10 ~~~~~~--~~g~~~~~~~g~----~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 81 (379)
T TIGR00707 10 PVKIVR--GKGAYVYDVNGK----EYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVEH 81 (379)
T ss_pred CccEEE--eecCEEEeCCCC----EEEEcCcchhhccCCC-CCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhh
Confidence 556776 788999999999 9999999999999999 89999999999999876543 235688899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++ .+++++++||++|++.|++++ +.+....|. + +.+|++++++|||.+..+...++...+...
T Consensus 82 ~g---~~~~~~~~sg~~a~~~a~~~~-~~~~~~~~~--~-----------~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~ 144 (379)
T TIGR00707 82 SG---ADRVFFCNSGAEANEAALKLA-RKYTGDKGK--E-----------KKKIIAFENSFHGRTMGALSATGQPKYQKG 144 (379)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHhhccCC--C-----------CCeEEEECCCcCCccHHHHHhcCChhhhcc
Confidence 87 469999999999999999988 555321210 1 268999999999999988877664433210
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+.. + ....+++ +| .+.+++.+.
T Consensus 145 ----~----~~~~--~------~~~~~~~--------------------------~d--------~~~l~~~~~------ 168 (379)
T TIGR00707 145 ----F----EPLV--P------GFSYAPY--------------------------ND--------IESLKKAID------ 168 (379)
T ss_pred ----C----CCCC--C------CceeeCC--------------------------CC--------HHHHHHHhh------
Confidence 0 0000 0 0000000 12 234445443
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++.+|++||+ ++++|+.+++.+++++|.++|++||+++|+||+++|||++|.++.++.+++.||++||||++++|
T Consensus 169 --~~~~~v~~~p~-~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G- 244 (379)
T TIGR00707 169 --DETAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGG- 244 (379)
T ss_pred --hCeeEEEEEcc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCC-
Confidence 25789999998 99999888899999999999999999999999999999999877777789999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+..+|+++|++++++.++|+.++++++.+++.++.+++++.+. +.....+
T Consensus 245 ~riG~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~ 314 (379)
T TIGR00707 245 VPIGATLAKEEVAEAFTPG------DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLE----ELGKNYP 314 (379)
T ss_pred cccEEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHhhCC
Confidence 8999999999999988642 35678889999999999999988766677778777777776554 3333333
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+..+++.|.++.+++.++ ...+.+.|.++||++.|.+ +.+|++|++.++++++++++++|++++
T Consensus 315 -~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 315 -NKEVRGKGLMLGIELEAP----------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred -CCccccCceEEEEEecCc----------HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 245667899999987642 3578889999999999976 799999999999999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=324.33 Aligned_cols=196 Identities=31% Similarity=0.414 Sum_probs=168.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCC---chhHHHhhccccccccCCCcccccc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDS---DSRFLFTKLPSLSLRRNFPSSLILS 113 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (863)
|+.|||||||||||||++|++|+++|+ .+|++|+++||||||+.... |..++++ +.+
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~-----~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~-~~~-------------- 61 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALK-----QQGYSVAGYKPVQTGSEETAENSDALVLQR-LSG-------------- 61 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHH-----hCCCeeEEECceeeCCCCCCCCchHHHHHH-hcC--------------
Confidence 578999999999999999999999999 99999999999999987653 4433332 223
Q ss_pred chhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCC
Q 002941 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVG 193 (863)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~ 193 (863)
.+.+|+ .++||.|++|.|||+|++.+ |..++
T Consensus 62 -----------------~~~~~~-------------------------------~~~py~f~~P~sPhlAa~~e-g~~I~ 92 (223)
T COG0132 62 -----------------LDLSYE-------------------------------LINPYRFKEPLSPHLAAELE-GRTID 92 (223)
T ss_pred -----------------CCcccc-------------------------------cccceecCCCCCcHHHHhhc-CCccc
Confidence 233332 37899999999999999999 99999
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (863)
.+++...+.++.+++ |++|||||||+++|+++..+.+|+++.+++|||||++.+||+|||+++++++
T Consensus 93 ~~~l~~~l~~l~~~~-------------d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~ea 159 (223)
T COG0132 93 LEKLSQGLRQLLKKY-------------DLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEA 159 (223)
T ss_pred HHHHHHHHHhhhccc-------------CEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHHH
Confidence 999999999888876 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEEEcCCCCCC------HHHHHHhhcCCCCeee-cCCCCCC
Q 002941 274 LKLRGYDVVAVVFEDHGLVN------EVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 274 ~~~~~~~v~gvi~n~~~~~~------~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
++++|++++|+|+|+..... ...++++ .+.|++| +|+.++.
T Consensus 160 l~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~--~~~p~~g~~p~~~~~ 207 (223)
T COG0132 160 LRARGLPLAGWVANGINPELDHYAEINATLLKR--IGAPLLGIIPYLPES 207 (223)
T ss_pred HHHCCCCEEEEEEccCCCchhHHHHHHHHHHHh--cCCCccccccCCccc
Confidence 99999999999999873321 1123333 5899999 9997764
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.51 Aligned_cols=345 Identities=12% Similarity=0.032 Sum_probs=242.7
Q ss_pred EEEeecccceEEEEcCCCcccceEEeeecccccccCC-CCCcHHHHHHHHHHHHhccc--c-cCC-CCCChHHHHHHHHH
Q 002941 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGH--V-MFP-ENVYEPALECAELL 452 (863)
Q Consensus 378 ~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~~p~V~~Ai~~q~~~~~~--~-~~~-~~~~~~~~eLae~L 452 (863)
.+++ |+|+++||.||+ +|||+.+ +.++| | +||+|++|+.+|++++++ . ... ...++...+|+++|
T Consensus 31 ~~~~--~~G~~~~d~~g~----~~ld~~s---~~~lgl~-~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~l 100 (402)
T PRK07505 31 TVGE--REGILITLADGH----TFVNFVS---CSYLGLD-THPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEAL 100 (402)
T ss_pred eeec--cCCccEEecCCc----eEEEeec---CCccCCC-CCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHH
Confidence 4444 899999999999 9999998 57888 7 899999999999998752 1 111 24578899999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
++++| . ++++++||++|++.|+|++.+ +. .+ .+ +.+||+++++|||+..+... .
T Consensus 101 a~~~~---~-~~~~~~sG~~a~~~ai~~~~~-~~-~~---~~-----------~~~vi~~~~~~H~s~~~~~~------~ 154 (402)
T PRK07505 101 SELFG---A-SVLTFTSCSAAHLGILPLLAS-GH-LT---GG-----------VPPHMVFDKNAHASLNILKG------I 154 (402)
T ss_pred HHHhC---C-CEEEECChHHHHHHHHHHHHh-cc-cC---CC-----------CCCEEEEchhhhHhHHhhhh------h
Confidence 99987 3 788888999999999999832 11 01 12 26799999999994321110 0
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
. .. .+ .+.+++++ | .+.+++.+.
T Consensus 155 ~--------~~------~~------~v~~~~~~--------------------------d--------~~~l~~~~~--- 177 (402)
T PRK07505 155 C--------AD------ET------EVETIDHN--------------------------D--------LDALEDICK--- 177 (402)
T ss_pred h--------hc------CC------eEEEeCCC--------------------------C--------HHHHHHHHh---
Confidence 0 00 00 11122221 1 134455553
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc--ccccccCCcchhhhcCC-CCcEE----
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF--TGFWRLGVETTADLLGC-VPDIA---- 685 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~--TGfGRtG~~~a~e~~gv-~PDiv---- 685 (863)
++..+++|+||+ ++.|++ .+ +++|+++|++||++||+||+| +||||+|.+++.+++++ .||.+
T Consensus 178 ----~~~~~~vl~~p~-~~~G~~-~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~ 247 (402)
T PRK07505 178 ----TNKTVAYVADGV-YSMGGI-AP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAA 247 (402)
T ss_pred ----cCCCEEEEEecc-cccCCc-CC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEE
Confidence 235789999997 877654 44 799999999999999999998 78999999888899998 78854
Q ss_pred EeccccCCCCCCceeee-ccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 002941 686 CYGKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (863)
Q Consensus 686 t~sKgLggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~ 762 (863)
++||+++++ .|+++ .++++++.+.. +.+.+||+++ +++|++++++++++.++.+.+ ..+++.+.
T Consensus 248 s~sK~~~~~---Gg~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~----~~~~l~~~ 314 (402)
T PRK07505 248 SLGKAFGAS---GGVIMLGDAEQIELILR------YAGPLAFSQSLNVAALGAILASAEIHLSEELDQ----LQQKLQNN 314 (402)
T ss_pred echhhhhcc---CeEEEeCCHHHHHHHHH------hCCCceeCCCCCHHHHHHHHHHHHHHhccCcHH----HHHHHHHH
Confidence 799998753 24455 47888888864 2356677665 689999999999776543322 22333332
Q ss_pred HHHHHHHHHhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCC
Q 002941 763 WDLELIQQISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPC 833 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~ 833 (863)
+. .+.... ...++|.|+++. +.+.+. ..+..+.+.|+++||++++. + +.+||+|++.
T Consensus 315 ~~-~~~~~~-----~~~~~g~~~~i~~~~~~~~--------~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~ 380 (402)
T PRK07505 315 IA-LFDSLI-----PTEQSGSFLPIRLIYIGDE--------DTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRAS 380 (402)
T ss_pred HH-HHHHHH-----HhcCCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCcc
Confidence 21 111111 123467776654 333211 13567899999999999864 2 6899999999
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~ 852 (863)
+|+||+++++++|++++++
T Consensus 381 ~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 381 HTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
|
| >PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=298.30 Aligned_cols=196 Identities=35% Similarity=0.468 Sum_probs=161.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (863)
++|||+||+|+||||+||+||+++|+ ++|.+|+|||||++|...++|..++.+.+ +++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~-----~~g~~v~~~KPi~~~~~~d~d~~~~~~~~-~~~---------------- 58 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR-----RRGIKVGYFKPIQTGPEDDEDAELIRELF-GLS---------------- 58 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH-----HTTSEEEEEEEEEESCCCSSHHHHHHHHC-CTC----------------
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH-----hCCCceEEEeeeEecCCCCchHHHHHHHh-CCC----------------
Confidence 47999999999999999999999999 99999999999999998888888776543 330
Q ss_pred hhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHH
Q 002941 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (863)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~ 197 (863)
.+....++|.|++|.+|+++++.+ +..+..+++
T Consensus 59 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 91 (199)
T PF13500_consen 59 ----------------------------------------------EPPDDPSPYTFDEPASPHLAAELE-GVDIDLERI 91 (199)
T ss_dssp ----------------------------------------------CCHHHHECEEESSSS-HHHHHHHH-T----HHHH
T ss_pred ----------------------------------------------cccccccccccCcccCHHHHhhcc-CCcccHHHH
Confidence 112336899999999999999999 877887777
Q ss_pred HHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhC
Q 002941 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (863)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~ 277 (863)
+ ++++.+++ |++||||+||+++|+..+.+|+|||+.+++|||||++.++|++|++++++++++.+
T Consensus 92 ~--~~~l~~~~-------------D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 92 I--YKELAEEY-------------DVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp H--HHHCHTTT-------------CEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred H--HHHHhhcC-------------CEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 7 66666665 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEcCC-CCCCHHHHHHhhcCCCCeee-cCCCCCCCch
Q 002941 278 GYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 278 ~~~v~gvi~n~~-~~~~~~~~~~~~~~~~pvl~-~p~~~~~~~~ 319 (863)
|++++|||+|++ ..++.+.++++ .++||+| ||+.+.++++
T Consensus 157 g~~v~GvI~N~~~~~~~~~~l~~~--~~i~vlg~iP~~~~L~~p 198 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPENLEALREK--SGIPVLGVIPEDPDLSAP 198 (199)
T ss_dssp TS-EEEEEEEECTCCHHHHHHHHH--HCCEECE---SSTT----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHh--CCCCEEEECCCCcccccC
Confidence 999999999997 44577778877 6899999 9999999765
|
... |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=298.03 Aligned_cols=331 Identities=14% Similarity=0.089 Sum_probs=243.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
++++|+| |.+||..+||+|++|+.+|++++++.. ...+.++...+|+++|++++|. ++++|++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG~~An~ 119 (406)
T PRK13393 46 EVTVWCS---NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSGYVSNW 119 (406)
T ss_pred cEEEeec---ccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCcHHHHH
Confidence 8999998 899999889999999999999987642 1223467889999999999983 68999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.|++...+.+ +.++|.++..|||++..++..++...
T Consensus 120 ~ai~~l~~~~--------------------~g~~I~~~~~~H~s~~~~~~~~g~~~------------------------ 155 (406)
T PRK13393 120 AALSTLGSRL--------------------PGCVILSDELNHASMIEGIRHSRAEK------------------------ 155 (406)
T ss_pred HHHHHhhcCC--------------------CCCEEEEccchhHHHHHHHHHcCCeE------------------------
Confidence 9999541211 13589999999999887775532110
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..++. +| .+.+++.+.. ..++++++|++|++ ++++|.
T Consensus 156 ----~~~~~--------------------------~d--------~~~l~~~l~~----~~~~~~~~v~~~~v-~~~~G~ 192 (406)
T PRK13393 156 ----RIFRH--------------------------ND--------PADLERKLSD----LDPHRPKLVAFESV-YSMDGD 192 (406)
T ss_pred ----EEeCC--------------------------CC--------HHHHHHHHHh----ccCCCCEEEEEcCC-CCCCCc
Confidence 00010 11 1223444432 12345789999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCCC--CcEE--EeccccC--CCCCCceeeeccHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCV--PDIA--CYGKLLT--GGVIPLAATLATNAV 707 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv~--PDiv--t~sKgLg--gG~~Pigav~~~~~i 707 (863)
+.+ +++|+++|++||++||+||+|+ |+ |++|.++ ++++++. +|++ ||||+++ || ++++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~~GG-----~~~~~~~~ 262 (406)
T PRK13393 193 IAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGVMGG-----YITGSAAL 262 (406)
T ss_pred hhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcccCc-----eeeCCHHH
Confidence 887 9999999999999999999997 66 8888765 4777775 6777 9999997 55 47889999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
++.+..... .+.+|++++|++++++.++|+.+++.. ...++.++.+++.+.| .+. ..+ .+++.|.|
T Consensus 263 ~~~l~~~~~----~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L----~~~--g~~---~~~~~~~i 329 (406)
T PRK13393 263 CDFIRSFAS----GFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARL----DKA--GIP---HLPNPSHI 329 (406)
T ss_pred HHHHHHhCc----CceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH----HHc--CCC---cCCCCCCe
Confidence 988764221 123577889999999999999886542 2234444454554433 221 222 24678889
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+.+.+. ..+..+.+.|++ +||++++. | +.+|++|++.+|++|+|+++++|+++++++.
T Consensus 330 ~~v~~~~~--------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~~ 398 (406)
T PRK13393 330 VPVMVGDP--------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARLG 398 (406)
T ss_pred EEEEeCCH--------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 88866432 135678888987 59999752 3 7899999999999999999999999887653
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=299.85 Aligned_cols=355 Identities=13% Similarity=0.094 Sum_probs=250.4
Q ss_pred EEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHH
Q 002941 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLL 453 (863)
Q Consensus 378 ~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~ 453 (863)
++++ ++|.+++ .+|+ +|+|+.++. ++|..+||+|++|+.+++++++.... ..++++.+.+|+++|+
T Consensus 95 ~~~~--~~G~~i~-~~G~----~~id~~s~~---~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La 164 (481)
T PLN02822 95 VLES--AAGPHTI-INGK----DVVNFASAN---YLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIA 164 (481)
T ss_pred ceec--CCCCeEE-ECCc----eEEEeECCC---cCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHH
Confidence 5555 6788999 7999 999999854 44544689999999999999876421 2246788999999999
Q ss_pred hhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 454 ~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
++++.+ +.++|++ |..++..|++.. ++| .++|.++..||+++..++.+++...
T Consensus 165 ~~~~~~--~~i~~s~-G~~a~~sai~a~-----------~~~-----------gd~Ii~d~~~H~s~~~~~~ls~~~~-- 217 (481)
T PLN02822 165 KFLGTP--DSILYSY-GLSTIFSVIPAF-----------CKK-----------GDIIVADEGVHWGIQNGLYLSRSTI-- 217 (481)
T ss_pred HHhCCC--CEEEECC-HHHHHHHHHHHh-----------CCC-----------CCEEEEeCCccHHHHHHHHHcCCeE--
Confidence 999853 5677775 555788877743 233 5678899999999877766653110
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
..+++ +|. +.++..++++-.
T Consensus 218 --------------------------~~~~~--------------------------nd~--------~~l~~~l~~~~~ 237 (481)
T PLN02822 218 --------------------------VYFKH--------------------------NDM--------ESLRNTLEKLTA 237 (481)
T ss_pred --------------------------EEECC--------------------------CCH--------HHHHHHHHHHhh
Confidence 00110 111 112222221100
Q ss_pred CC-CCCcE-EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCC---CCcEEE
Q 002941 614 LK-VSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC---VPDIAC 686 (863)
Q Consensus 614 ~~-~~~~i-AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv---~PDivt 686 (863)
.. ...++ ++||+|++ +++.|.+.+ +++|+++|++||++||+||+|+ .+|++|.+ .++++|+ .|||++
T Consensus 238 ~~~~~~~~~~~Ivve~i-~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~dii~ 311 (481)
T PLN02822 238 ENKRKKKLRRYIVVEAI-YQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDIIT 311 (481)
T ss_pred hhcccCCCcEEEEEecC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeEEE
Confidence 00 01233 89999998 999998887 8999999999999999999997 45667765 6799998 789987
Q ss_pred --eccccC--CCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcC-hhhHHhHHHHHHHH
Q 002941 687 --YGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKD-PQTNHNIIPERRIL 759 (863)
Q Consensus 687 --~sKgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~-~~l~~~l~~~~~~l 759 (863)
|||+++ || ++++++++++.+... .+++||+++ |..++|++++|+.+++ +++.++++++++++
T Consensus 312 ~s~sKalg~~GG-----~i~g~~~ii~~~~~~------~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l 380 (481)
T PLN02822 312 AAMGHALATEGG-----FCTGSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALL 380 (481)
T ss_pred ecchhhhhhCCe-----EEEcCHHHHHHHHhc------CCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 789997 66 488999999987642 467788877 8899999999998865 56777787777777
Q ss_pred HHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec----------CCEEEE
Q 002941 760 RELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL----------GNVIYL 828 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~----------g~~lr~ 828 (863)
++.|.+ . ...+. ...+.+.++.+.+.+..............+++.|+ ++||++.+. ...+|+
T Consensus 381 ~~~L~~----~-~g~~~--~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi 453 (481)
T PLN02822 381 HKGLSD----I-PGLSI--GSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRL 453 (481)
T ss_pred HHHHHh----c-CCccc--CCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEE
Confidence 764422 1 11111 11245667777775321000011234567899998 889999864 135898
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+..+|++||++++++|++++.++
T Consensus 454 ~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 454 FVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999887664
|
|
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=273.10 Aligned_cols=208 Identities=21% Similarity=0.187 Sum_probs=161.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+....+.
T Consensus 2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~-----~~g~~v~~~KPi~~g~~~~~~~-------------------------- 50 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALA-----SQGKTVAGYKPVAKGSKETPEG-------------------------- 50 (231)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEECccccCCccCCCC--------------------------
Confidence 346999999999999999999999999 9999999999999996432110
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
+.++|+..++.....+.++ ...+||.++.+ .+++.+ +..++.++
T Consensus 51 ~~~~D~~~l~~~~~~~~~~-------------------------------~~~~p~~~~~~----~a~~~~-~~~i~~~~ 94 (231)
T PRK12374 51 LRNKDALVLQSVSSIELPY-------------------------------EAVNPIALSEE----ESSVAH-SCPINYTL 94 (231)
T ss_pred CchHHHHHHHHhcCCCCCH-------------------------------HhccCeecCCC----cChHHc-CCcCCHHH
Confidence 0012222222222222222 23567777655 345566 66778899
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~ 276 (863)
|.+.++++.+++ |++|||||||+++|++......|++..+++|+|||++.++|++||++++++.++.
T Consensus 95 i~~~~~~l~~~~-------------D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~lLt~~~l~~ 161 (231)
T PRK12374 95 MSNGLANLSEKV-------------DHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIAN 161 (231)
T ss_pred HHHHHHHHHhhC-------------CEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHHHHHHHHHh
Confidence 999998877766 9999999999999998888999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCCC------HHHHHHhhcCCCCeee-cCCCCCCCchhhhhhhh
Q 002941 277 RGYDVVAVVFEDHGLVN------EVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWFD 326 (863)
Q Consensus 277 ~~~~v~gvi~n~~~~~~------~~~~~~~~~~~~pvl~-~p~~~~~~~~~~~~~l~ 326 (863)
+|++++|+|+|++.... ...+++. .++|++| +|+.+.+...++.+|++
T Consensus 162 ~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~--~~~~~lg~iP~~~~~~~~~~~~~l~ 216 (231)
T PRK12374 162 DGLPLIGWVANRINPGLAHYAEIIDVLGKK--LPAPLIGELPYLPRAEQRELGQYID 216 (231)
T ss_pred CCCcEEEEEEeCccCchhhhhhHHHHHHHh--cCCCEEEEeCCCCCCChHHHHhhcC
Confidence 99999999999984432 2333343 5899999 99998876555666654
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=282.82 Aligned_cols=330 Identities=16% Similarity=0.149 Sum_probs=238.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
++++|+| |++||..+||+|++|+.+|++++++... ..+.++...+|+++|+++++. +.+++++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---~~~l~~~sG~~an~ 119 (402)
T TIGR01821 46 DVTVWCS---NDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---ESALVFTSGYVAND 119 (402)
T ss_pred eEEEeEc---cCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---CeEEEECchHHHHH
Confidence 8999998 8999999999999999999999876431 124578899999999999973 57899999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.|++++.+ + + +..+|..+..||+++..++..++.+..
T Consensus 120 ~ai~~l~~-~--------~-----------~~~~v~~~~~~h~s~~~~~~~~g~~~~----------------------- 156 (402)
T TIGR01821 120 ATLATLAK-I--------I-----------PGCVIFSDELNHASMIEGIRHSGAEKF----------------------- 156 (402)
T ss_pred HHHHHhhC-C--------C-----------CCCEEEEcchHhHHHHHHHHHcCCeEE-----------------------
Confidence 99998831 1 0 145788888899988766654321100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
.++. +| .+++++.++. ..++++.+|++|++ +++.|.
T Consensus 157 -----~~~~--------------------------~d--------~~~l~~~l~~----~~~~~~~~v~~e~~-~~~~G~ 192 (402)
T TIGR01821 157 -----IFRH--------------------------ND--------VAHLEKLLQS----VDPNRPKIIAFESV-YSMDGD 192 (402)
T ss_pred -----EECC--------------------------CC--------HHHHHHHHHh----ccCCCCeEEEEcCC-CCCCCC
Confidence 0000 11 1234445532 12235789999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCC--CCcEE--EeccccC--CCCCCceeeeccHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--t~sKgLg--gG~~Pigav~~~~~i 707 (863)
+.+ +++|+++|++||++||+||+|+ | +|.+|.+ ..+++++ .||++ ||||+++ || ++++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~~GG-----~i~~~~~~ 262 (402)
T TIGR01821 193 IAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLMHRIDIIEGTLAKAFGVVGG-----YIAASRKL 262 (402)
T ss_pred ccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhccCCCCCeEEEEechhhhccCCc-----eeecCHHH
Confidence 877 9999999999999999999997 3 2444543 3466676 47887 9999997 55 48889999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
++.+..... .+.+|++.+|+++++++++|+.+++.+ +.+++.++.+++.+.+ .+. ..+. +...|.+
T Consensus 263 ~~~l~~~~~----~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L----~~~--g~~~---~~~~~~i 329 (402)
T TIGR01821 263 IDAIRSYAP----GFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLL----EAL--GIPV---IPNPSHI 329 (402)
T ss_pred HHHHHHhCc----CceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----HHc--CCCc---CCCCCCE
Confidence 998864221 133577899999999999999986543 3344444455554433 221 2222 2345778
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.+... ..+..+++.|++ +||++++. + +.+|++|++.+|++|+|+++++|+++++++
T Consensus 330 ~~i~~~~~--------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 330 VPVIIGDA--------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred EEEEeCCH--------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 87766432 135678888875 59999763 3 689999999999999999999999988764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=280.48 Aligned_cols=330 Identities=15% Similarity=0.106 Sum_probs=238.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
+++||+| |+++|+..||+|++|+.++++++++... ..+.++...+|+++|+++.+. ++.++++||++||+
T Consensus 47 ~~~~~~s---~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~---~~~~~~~sG~~an~ 120 (407)
T PRK09064 47 EVTVWCS---NDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK---EAALVFTSGYVSND 120 (407)
T ss_pred eEEEEEC---CCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC---CcEEEECcHHHHHH
Confidence 8999998 8899998899999999999999876421 113578899999999999873 57888999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.|++++.+ + . +..+|..+..+|++...++...+.+.
T Consensus 121 ~ai~~l~~-~--------~-----------~~~~i~~~~~~h~s~~~~~~~~~~~~------------------------ 156 (407)
T PRK09064 121 ATLSTLAK-L--------I-----------PDCVIFSDELNHASMIEGIRRSRCEK------------------------ 156 (407)
T ss_pred HHHHHHhC-C--------C-----------CCCEEEEeCcchHHHHHHHHHcCCcE------------------------
Confidence 99998832 1 0 13466767667887655544322110
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..++. +| .+.+++.++. ..++++.+|++|++ +++.|.
T Consensus 157 ----~~~~~--------------------------~d--------~~~le~~l~~----~~~~~~~~v~~~~v-~s~~G~ 193 (407)
T PRK09064 157 ----HIFRH--------------------------ND--------VAHLEELLAA----ADPDRPKLIAFESV-YSMDGD 193 (407)
T ss_pred ----EEECC--------------------------CC--------HHHHHHHHHh----ccCCCCeEEEEeCC-CCCCcc
Confidence 00000 11 1345555542 12245789999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCC--CCcEE--EeccccC--CCCCCceeeeccHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--t~sKgLg--gG~~Pigav~~~~~i 707 (863)
+.+ +++|+++|++||++||+||+|+ | ||++|.++ .++.++ .||++ ||||++| || ++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG-----~~~~~~~~ 263 (407)
T PRK09064 194 IAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGG-----YIAGSAAL 263 (407)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCc-----eEecCHHH
Confidence 887 9999999999999999999997 6 58888765 567776 57888 9999987 55 48889999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
++.+..... .+.+|++.+|+++++++++|+++++.+ ..++++++.+++.+.| .+. ..+. +...+.+
T Consensus 264 ~~~l~~~~~----~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L----~~~--g~~~---~~~~~~i 330 (407)
T PRK09064 264 VDAVRSYAP----GFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAAL----DAA--GIPV---MPNESHI 330 (407)
T ss_pred HHHHHHhCc----cccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHc--CCCC---CCCCCCE
Confidence 998764211 134577889999999999999987543 2355555555555433 221 2222 2234667
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.+.+. ..+..+.+.|++ +||++++. + +.+|++|++.+|++|+++++++|+++++++
T Consensus 331 v~i~~~~~--------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 331 VPVMVGDP--------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred EEEEeCCH--------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 77766432 135678888875 59999752 2 689999999999999999999999988765
|
|
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=261.60 Aligned_cols=202 Identities=28% Similarity=0.353 Sum_probs=166.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC---CCchhHHHhhccccccccCCCccccccch
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH---DSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
.|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+.. +.|..++.+.+ ++
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~-----~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~-~~--------------- 59 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSGCEETDRNGDALALQRLS-GL--------------- 59 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH-----HcCCceEEEeeEecCCCCCCCcHHHHHHHHHc-CC---------------
Confidence 4899999999999999999999999 999999999999999753 33555544432 22
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~ 195 (863)
. .+....++|.|+.|.||++++..+ +..++.+
T Consensus 60 ----------------~-------------------------------~~~~~~~~~~~~~~~sp~~a~~~~-~~~~~~~ 91 (222)
T PRK00090 60 ----------------P-------------------------------LDYEDVNPYRFEEPLSPHLAAALE-GVAIDLE 91 (222)
T ss_pred ----------------C-------------------------------CChhhcCceeeCCCCCHHHHHHHh-CCCCCHH
Confidence 0 011236789999999999999998 8888899
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~ 275 (863)
++.+.++++.+++ |++||||+||+++|+....+++|+++.+++|||+|++.+++++++++.+++.++
T Consensus 92 ~i~~~~~~l~~~~-------------D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 92 KISAALRRLAQQY-------------DLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHHHHHHHHHhhC-------------CEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 9999998877666 999999999999998877899999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEcCCCCC-------CHHHHHHhhcCCCCeee-cCCCCCCCchhhhhh
Q 002941 276 LRGYDVVAVVFEDHGLV-------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEW 324 (863)
Q Consensus 276 ~~~~~v~gvi~n~~~~~-------~~~~~~~~~~~~~pvl~-~p~~~~~~~~~~~~~ 324 (863)
.+|+++.|+|+|++... +.+.++++ .++|++| +|+........+.++
T Consensus 159 ~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~--~gi~vlg~ip~~~~~~~~~~~~~ 213 (222)
T PRK00090 159 ARGLPLAGWVANGIPPEPGLRHAENLATLERL--LPAPLLGELPYLAEAELAAAAEY 213 (222)
T ss_pred HCCCCeEEEEEccCCCcchhHHHHHHHHHHHH--cCCCeEEecCCCCCcchHHHHhh
Confidence 99999999999987433 33444554 5899999 999755433333333
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=274.81 Aligned_cols=346 Identities=14% Similarity=0.112 Sum_probs=232.7
Q ss_pred eeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 403 D~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
||.| +++||..+||++++++.+++++++..+. ....+....+|+++|+++.+. +..++++||..|+..++
T Consensus 2 ~f~s---~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~---e~al~~~sG~~a~~~~i 75 (392)
T PLN03227 2 NFAT---HDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT---ESAILYSDGASTTSSTV 75 (392)
T ss_pred CCcC---cCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHHH
Confidence 4554 7788888999999999999999774431 112356789999999999984 57888899999998777
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
....+ .| ..|| .+..-|+++..++.+++..
T Consensus 76 ~~l~~---------~G------------D~Vl-~~~~~h~s~~~~~~l~~~~---------------------------- 105 (392)
T PLN03227 76 AAFAK---------RG------------DLLV-VDRGVNEALLVGVSLSRAN---------------------------- 105 (392)
T ss_pred HHhCC---------CC------------CEEE-EeccccHHHHHHHHHcCCe----------------------------
Confidence 65411 11 3455 4445566655443332100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcC-C--CCCCCCcEEEEEEccccccCCCc
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN-P--GLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~-i--~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++. +|..++ +.+.+.+... . ......+...|++||+ ++++|.
T Consensus 106 ~~~~~~--------------------------~d~~~l-----~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v-~~~~G~ 153 (392)
T PLN03227 106 VRWFRH--------------------------NDMKDL-----RRVLEQVRAQDVALKRKPTDQRRFLVVEGL-YKNTGT 153 (392)
T ss_pred EEEeCC--------------------------CCHHHH-----HHHHHHhhhhccccccccCCCcEEEEEcCC-cCCCCc
Confidence 000000 110111 1111122100 0 0001124678999998 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCCCC----cEEEeccccCCCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP----DIACYGKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~P----Divt~sKgLggG~~Pigav~~~~~i~~ 709 (863)
+++ +++++++|++||++||+||+|+ ++|++|. |+++++|+.| ||+++|++-+.| .+.|++++++++++
T Consensus 154 i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~ 227 (392)
T PLN03227 154 LAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVD 227 (392)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeechhhhh-ccCcEEecCHHHHH
Confidence 887 9999999999999999999997 3444555 6899999999 999877332222 33455778999988
Q ss_pred hhhcCCccceeecccCCCcc--HHHHHHHHHHHHH-hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc---
Q 002941 710 SFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL--- 783 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~-l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~--- 783 (863)
.+.. ..+++||+++ |+.|+|++++++. ++++++.+++.++++++++.|+ + ..+|.+.++||.
T Consensus 228 ~~~~------~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~----~--~~~~~~~~~rg~~~~ 295 (392)
T PLN03227 228 HQRL------SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLT----N--SSHPYALKLRNRLVI 295 (392)
T ss_pred HHHH------hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----h--cCCcccccccccccc
Confidence 7753 2367788886 8888888877754 5667788888888888887553 2 356778888883
Q ss_pred -----ceEEEEEEccCCcCCCC-chHHHHHHHHHHHHCCcEEEecC------------CEEEEecCCCCcHHHHHHHHHH
Q 002941 784 -----GTLCAIELQAAGCNAGY-GSLYAASLLKKLREDGVYMRPLG------------NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 784 -----Gl~~~iel~~~~~~~~~-~~~~~~~l~~~l~e~GV~~~p~g------------~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|+|++|++.+....... .......+++.|+++|+++.+.+ ..+|+.....+|+||||+++++
T Consensus 296 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~ 375 (392)
T PLN03227 296 TSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTV 375 (392)
T ss_pred CCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 55899999653211001 11134588999999999997543 3455666666699999999999
Q ss_pred HHHHHHHHH
Q 002941 846 LYQRLEEFD 854 (863)
Q Consensus 846 L~~~l~~l~ 854 (863)
|+++++++.
T Consensus 376 l~~~~~~~~ 384 (392)
T PLN03227 376 LGEAVEAIL 384 (392)
T ss_pred HHHHHHHHH
Confidence 999998763
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=270.60 Aligned_cols=338 Identities=10% Similarity=0.024 Sum_probs=251.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
++++|+| |++||..+||+|++|+.+++++++... ...+.++.+.+|+++|+++++ .+.+++++||+.||.
T Consensus 103 ~~l~FsS---ndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~ 176 (476)
T PLN02955 103 KLLLFSG---NDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM 176 (476)
T ss_pred eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH
Confidence 8999998 999999999999999999999998653 234567889999999999998 468999999999999
Q ss_pred HHHHHHHHHH--HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 476 IALKMAFRKF--SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 476 ~ALklA~r~~--~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+++....... ....+. +. ..+..+|..+...|.+...++.++.... + .
T Consensus 177 ~~i~aL~~~~~~~~~~~~-~~---------~~~~d~i~~D~~~HaSI~dG~~ls~~~~--~---------------a--- 226 (476)
T PLN02955 177 AAMVAIGSVASLLAASGK-PL---------KNEKVAIFSDALNHASIIDGVRLAERQG--N---------------V--- 226 (476)
T ss_pred HHHHHHhhcccccccccc-cc---------CCCCcEEEEeccchHHHHHHHHhccccC--C---------------c---
Confidence 9997641000 000000 00 0136688999999999887776642100 0 0
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
....++ .|| .+.|++.|+. ..++.+.||+|+| .++.
T Consensus 227 ------~~~~f~------------------------HND--------~~~Le~~L~~-----~~~~~~~Vv~EgV-~Smd 262 (476)
T PLN02955 227 ------EVFVYR------------------------HCD--------MYHLNSLLSS-----CKMKRKVVVTDSL-FSMD 262 (476)
T ss_pred ------eEEEeC------------------------CCC--------HHHHHHHHHh-----CCCCceEEEEeCC-CCCC
Confidence 000011 133 2456667753 2334578999998 9999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCCcE----EEeccccC--CCCCCceeeeccH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDI----ACYGKLLT--GGVIPLAATLATN 705 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PDi----vt~sKgLg--gG~~Pigav~~~~ 705 (863)
|.+.| |++|+++|++||++||+||+| |+|+.|+ .+..+++|+.||+ .||||++| ||| +++++
T Consensus 263 Gdiap----L~eL~~L~~~~ga~LiVDEAH-~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGf-----i~gs~ 332 (476)
T PLN02955 263 GDFAP----MEELSQLRKKYGFLLVIDDAH-GTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGF-----IACSK 332 (476)
T ss_pred CCcCC----HHHHHHHHHHcCcEEEEcccc-cCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCce-----eecHH
Confidence 99888 999999999999999999999 6779988 6778899998876 58999998 775 99999
Q ss_pred HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 706 AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 706 ~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
++++.+...++ .+.+|.+..|..++++++++++++ ++..+++++++.+++++. ...+ + ..
T Consensus 333 ~~~~~l~~~~~----~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---------~G~~----~--~s 393 (476)
T PLN02955 333 KWKQLIQSRGR----SFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---------SGVD----I--SS 393 (476)
T ss_pred HHHHHHHHhCC----CCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---------cCCC----C--CC
Confidence 99999886432 233444667778888999999985 445567788877777651 1221 1 25
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.++.|.+.++. .+..+++.|+++||++.+. | .++|++.+..+|++||+.++++|.++.+.+.
T Consensus 394 PI~pI~ig~~~--------~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 394 PIISLVVGNQE--------KALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred CEEEEEeCCHH--------HHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 67777776553 5778999999999999742 2 5899999999999999999999988766543
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=266.87 Aligned_cols=326 Identities=17% Similarity=0.159 Sum_probs=255.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
+++||+| |++||.++||+|++|+.+++++++... ...++++.+.+|+++|+++++ .+++++++||..||.
T Consensus 40 ~~~nf~S---NdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~SGy~AN~ 113 (388)
T COG0156 40 KVLNFCS---NDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFSSGFVANL 113 (388)
T ss_pred eeEeeec---cCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEcccchhHH
Confidence 8999998 899999999999999999999986543 234678999999999999998 478999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
+++-... + +..+|..+.-.|.+.+.+..+++...++
T Consensus 114 ~~i~~l~-----------~-----------~~dli~~D~lnHASiidG~rls~a~~~~---------------------- 149 (388)
T COG0156 114 GLLSALL-----------K-----------KGDLIFSDELNHASIIDGIRLSRAEVRR---------------------- 149 (388)
T ss_pred HHHHHhc-----------C-----------CCcEEEEechhhhhHHHHHHhCCCcEEE----------------------
Confidence 9998662 2 2689999999999988887776432211
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
| .+ +| .++||+.|++.- ..++ +...|++|.| ++|.|.
T Consensus 150 ------------f-------------------~H-nD--------~~~Le~~l~~~~-~~~~-~~~~IvtegV-fSMdGd 186 (388)
T COG0156 150 ------------F-------------------KH-ND--------LDHLEALLEEAR-ENGA-RRKLIVTEGV-FSMDGD 186 (388)
T ss_pred ------------e-------------------cC-CC--------HHHHHHHHHhhh-ccCC-CceEEEEecc-ccCCCC
Confidence 0 00 23 256677775411 1122 5678999998 999999
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCCc---EE--EeccccC--CCCCCceeeeccHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD---IA--CYGKLLT--GGVIPLAATLATNA 706 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PD---iv--t~sKgLg--gG~~Pigav~~~~~ 706 (863)
+.| |++|.+||+|||++|++||+| ++|..|. .+.++++|+.|+ |+ ||||++| ||| +++++.
T Consensus 187 iAp----L~~l~~L~~ky~a~L~VDEAH-a~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~-----v~g~~~ 256 (388)
T COG0156 187 IAP----LPELVELAEKYGALLYVDEAH-AVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGY-----IAGSAA 256 (388)
T ss_pred cCC----HHHHHHHHHHhCcEEEEEccc-cccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCce-----eeCcHH
Confidence 999 999999999999999999999 7999997 566788999765 33 8999998 554 999999
Q ss_pred HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce
Q 002941 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (863)
Q Consensus 707 i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl 785 (863)
+.+++...++ .+.+|.+-.|..++++.++|++++ .++.+++++++.++++..+.. .... .....-.
T Consensus 257 ~~d~L~~~ar----~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~------~~~~---~~~s~s~ 323 (388)
T COG0156 257 LIDYLRNRAR----PFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA------LGLV---LLPSESP 323 (388)
T ss_pred HHHHHHHhCC----ceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh------cCCc---cCCCCCC
Confidence 9999987543 466788899999999999999996 456778888888887743211 1111 1123334
Q ss_pred EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 786 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 786 ~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
++.+.+.++. .+..+...|+++||++.+. | .++|+++++.+|++||+.++++|.+.
T Consensus 324 I~pv~~gd~~--------~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 324 IIPVILGDEE--------RALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eeeeEeCCHH--------HHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 6777777643 5788999999999999742 2 79999999999999999999998764
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=254.01 Aligned_cols=331 Identities=13% Similarity=0.066 Sum_probs=225.4
Q ss_pred ecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc--CCCC--CChHHHHHHHHHHhhcC
Q 002941 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPEN--VYEPALECAELLLQGVG 457 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~--~~~~--~~~~~~eLae~L~~~~p 457 (863)
++++|.+++|-+|+ .|||+. +||+|++|+.+|+++++... ...+ ..+...+|+++|+++++
T Consensus 49 ~~~~g~~~~~~~~~----~YL~l~-----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g 113 (407)
T PRK07179 49 GKTPGPDAIILQSN----DYLNLS-----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG 113 (407)
T ss_pred ecCCCCcEEEeecC----CccCCC-----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC
Confidence 44788899999999 899977 58999999999999874221 1112 23578999999999988
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCc
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~ 537 (863)
. ++++|++||++||+.+++...+ +| ..|+. +.-.|.....++...+
T Consensus 114 ~---~~~~~~~sG~~An~~~l~~l~~---------~g------------~~v~~-~~~~h~s~~~~~~~~g--------- 159 (407)
T PRK07179 114 F---ESCLLCQSGWAANVGLLQTIAD---------PN------------TPVYI-DFFAHMSLWEGVRAAG--------- 159 (407)
T ss_pred C---CcEEEECCHHHHHHHHHHHhCC---------CC------------CEEEE-ECCcCHHHHHHHHHCC---------
Confidence 3 5789999999999999987621 12 23443 3444443322211110
Q ss_pred CCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 002941 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (863)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~ 617 (863)
....+++ .+| .+.+++.+.+
T Consensus 160 ---------------------~~~~~~~------------------------~~d--------~~~l~~~l~~------- 179 (407)
T PRK07179 160 ---------------------AQAHPFR------------------------HND--------VDHLRRQIER------- 179 (407)
T ss_pred ---------------------CeEEEec------------------------CCC--------HHHHHHHHHh-------
Confidence 0001110 012 2445555642
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccc---cCCcchhhhcCCC--CcEEE--eccc
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCV--PDIAC--YGKL 690 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR---tG~~~a~e~~gv~--PDivt--~sKg 690 (863)
.+.++|++|++ +++.|.+.| +++|.++|++||++||+||+|+ +|+ +|..+ ++.+|+. +|+++ ++|+
T Consensus 180 ~~~~lV~v~~v-~n~tG~i~p----l~~I~~l~~~~~~~livDea~~-~g~~g~~g~g~-~~~~~~~~~vdi~~~S~sK~ 252 (407)
T PRK07179 180 HGPGIIVVDSV-YSTTGTIAP----LADIVDIAEEFGCVLVVDESHS-LGTHGPQGAGL-VAELGLTSRVHFITASLAKA 252 (407)
T ss_pred cCCeEEEECCC-CCCCCcccc----HHHHHHHHHHcCCEEEEECccc-ccCcCCCCCch-HHhcCCCCCCCEEEeechHh
Confidence 23578999997 999998887 8999999999999999999996 555 44432 5567764 48865 6899
Q ss_pred cCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHH
Q 002941 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 691 LggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
+++ ++|++++++++++.+.... .+..++.|+ .|..++++.++++.+++. +..+++.++.+++.+.| .+
T Consensus 253 ~g~---~~G~l~~~~~~~~~~~~~~--~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L----~~ 321 (407)
T PRK07179 253 FAG---RAGIITCPRELAEYVPFVS--YPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHANARFLREGL----SE 321 (407)
T ss_pred hhc---cCeEEEeCHHHHHHHHHhC--cCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HH
Confidence 974 5899999999988775321 111233443 456667777888887554 34555665555555533 22
Q ss_pred HHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec----CCEEEEecCCCCcHHHHHH
Q 002941 770 QISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL----GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 770 ~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~----g~~lr~~ppl~~t~eeid~ 841 (863)
.+. .+++.|.++.+++.... .+..+.+.|.++||+.. |. .+.+||+++..+|++|+++
T Consensus 322 ----~g~--~v~~~~~i~~l~~~~~~--------~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~ 387 (407)
T PRK07179 322 ----LGY--NIRSESQIIALETGSER--------NTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDR 387 (407)
T ss_pred ----cCC--CCCCCCCEEEEEeCCHH--------HHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 221 34567889888875321 35667889999999743 32 3789999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002941 842 LLLKLYQRLEEF 853 (863)
Q Consensus 842 ~v~~L~~~l~~l 853 (863)
++++|++++++.
T Consensus 388 ~~~~l~~~~~~~ 399 (407)
T PRK07179 388 VLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=243.40 Aligned_cols=342 Identities=15% Similarity=0.113 Sum_probs=234.4
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (863)
.++++ ++|.++|+ +|+ +|||+.++ .++||..+|+|++|+.+++.+++... ...+.++...++++++
T Consensus 24 ~~~~~--~~g~~~~~-~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 93 (385)
T PRK05958 24 RPREG--GAGRWLVV-DGR----RMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEEL 93 (385)
T ss_pred ccccc--CCCceeEe-CCc----eEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHH
Confidence 35555 78899997 888 99999985 35787578999999999998865321 1123467788999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+++++. +.++++++|++++..+++... ++ .+.|.+...+|+.+..++.+.+...
T Consensus 94 a~~~~~---~~~i~~~~g~~~~~~~l~~~~-----------~~-----------gd~V~~~~~~~~~~~~~~~~~g~~~- 147 (385)
T PRK05958 94 AEWFGA---ERALLFSSGYAANLAVLTALA-----------GK-----------GDLIVSDKLNHASLIDGARLSRARV- 147 (385)
T ss_pred HHHhCC---CcEEEECcHHHHHHHHHHHhC-----------CC-----------CCEEEEeCccCHHHHHHHHhcCCce-
Confidence 999873 577888899999988776441 11 2345566678887766554432110
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
..++. .| .+.+++.++.
T Consensus 148 ---------------------------~~~~~--------------------------~d--------~~~l~~~i~~-- 164 (385)
T PRK05958 148 ---------------------------RRYPH--------------------------ND--------VDALEALLAK-- 164 (385)
T ss_pred ---------------------------EEeCC--------------------------CC--------HHHHHHHHHh--
Confidence 00110 01 1345555542
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcC--CCCc---EE
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG--CVPD---IA 685 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~g--v~PD---iv 685 (863)
...+.++++++++ ++..|...+ +++|.++|++||++||+||+|+ | +|++|..+ ...++ ..+| +.
T Consensus 165 ---~~~~~~lvi~~~~-~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i~~~ 235 (385)
T PRK05958 165 ---WRAGRALIVTESV-FSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVILVG 235 (385)
T ss_pred ---ccCCCeEEEEEec-ccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceEEEE
Confidence 1234788999997 888887655 9999999999999999999994 2 34445433 22223 3567 45
Q ss_pred EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHH
Q 002941 686 CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWD 764 (863)
Q Consensus 686 t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~ 764 (863)
+++|+++. +.|++++++++++.+..... .+.++++.+|++++++.++|+.+++. ++.+++.++.+++.+.|
T Consensus 236 s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L- 307 (385)
T PRK05958 236 TLGKALGS---SGAAVLGSETLIDYLINRAR----PFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGL- 307 (385)
T ss_pred echhhccc---CCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-
Confidence 88999963 33678899999887753211 23455678899999999999988653 44455555555555433
Q ss_pred HHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcH
Q 002941 765 LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSP 836 (863)
Q Consensus 765 ~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~ 836 (863)
.+ .+ +.-+.+.|.++.+.+... ....++.+.|+++||++.+. .+.+|++|+..+++
T Consensus 308 ---~~----~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~ 371 (385)
T PRK05958 308 ---RA----LG-FQLMDSQSAIQPLIVGDN--------ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTE 371 (385)
T ss_pred ---HH----cC-CCcCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCH
Confidence 22 12 112345778888877432 13567999999999999752 26899999888999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRL 850 (863)
Q Consensus 837 eeid~~v~~L~~~l 850 (863)
+++++++++|++++
T Consensus 372 ~~i~~~l~~l~~~~ 385 (385)
T PRK05958 372 ADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998753
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=263.55 Aligned_cols=198 Identities=17% Similarity=0.080 Sum_probs=151.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCC----C----CCCchhHHHhhccccccccCCCc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY----P----HDSDSRFLFTKLPSLSLRRNFPS 108 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~----~----~~~~~~~~~~~~~~~~~~~~~~~ 108 (863)
|++|||+||+|+||||+||++|+++|+ ++|++|++||||++.. . +.+|..++++...++.
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~-----~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~------- 69 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILA-----RRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVE------- 69 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCCC-------
Confidence 678999999999999999999999999 9999999999985211 1 1234444444333220
Q ss_pred cccccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHh---
Q 002941 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE--- 185 (863)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~--- 185 (863)
+...++|+.++ |.+|+.++.
T Consensus 70 --------------------------------------------------------~~~~i~P~~~~-~~sp~~a~~~~~ 92 (488)
T PRK00784 70 --------------------------------------------------------PSVDMNPVLLK-PQSDRGSQVIVQ 92 (488)
T ss_pred --------------------------------------------------------chhccCCEEec-CCCCCcceEEEc
Confidence 01236788764 788886642
Q ss_pred ------------hhcCCCCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCccc-ccCCC-CCcHhHHhhhcCC
Q 002941 186 ------------RESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVA-SPGPS-GSLQCDLYRPFRL 251 (863)
Q Consensus 186 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~-~p~~~-~~~~~dla~~l~~ 251 (863)
.+ +..+..++|.+.++++.+++ |++|||||||++ .|+.+ +.+++|||+.+++
T Consensus 93 g~~~~~l~a~~~~~-~~~~~~~~I~~~~~~l~~~~-------------D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~ 158 (488)
T PRK00784 93 GKPVGNMDARDYHD-YKPRLLEAVLESLDRLAAEY-------------DVVVVEGAGSPAEINLRDRDIANMGFAEAADA 158 (488)
T ss_pred CccccccCHHHHhh-cchhhHHHHHHHHHHHHhcC-------------CEEEEECCCCccccCcccCCchhHHHHHHcCC
Confidence 23 45678899999998877665 999999999999 56643 5789999999999
Q ss_pred CEEEEECCCCC-cHHHHHHHHHHHHhC-CCcEEEEEEcCCCCCC------HHHHHHhhcCCCCeee-cCCCCCCCch
Q 002941 252 PGILVGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLVN------EVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 252 pvilV~~~~~g-~i~~~~~~~~~~~~~-~~~v~gvi~n~~~~~~------~~~~~~~~~~~~pvl~-~p~~~~~~~~ 319 (863)
|||||++.++| ++++++.+++.+... +.+|+|||+|++..+. ...++++ .++||+| ||+.+.+.-+
T Consensus 159 PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~--~gipvLG~iP~~~~L~~~ 233 (488)
T PRK00784 159 PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEEL--TGVPVLGVLPYLDDLRLP 233 (488)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHh--cCCCEEEEcCCCcCCCcC
Confidence 99999999998 589999888888754 4799999999985431 2223343 5899999 9999887544
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=237.32 Aligned_cols=346 Identities=11% Similarity=0.051 Sum_probs=232.2
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (863)
.++.+ ++|++++ .+|+ +|+|+.++ +.+||..+|.+++++.+++.++.+.. .+.+..+...+++++|
T Consensus 18 ~~~~~--~~g~~~~-~~g~----~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l 87 (385)
T TIGR01825 18 RVLES--AQGPRVR-VNGK----EVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKL 87 (385)
T ss_pred ccccc--CCCceEE-ECCc----eEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHH
Confidence 34554 7889999 9998 99999873 55788789999999999998765421 1234567889999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
++..+. +..++.+||++|+..|++..+ ++ .++|.....+|+....++.+.+...
T Consensus 88 ~~~~g~---~~~i~~~sG~~a~~~a~~~~~-----------~~-----------gd~vi~~~~~~~~~~~~~~~~g~~~- 141 (385)
T TIGR01825 88 AKFKKT---EAALVFQSGFNTNQGVLSALL-----------RK-----------GDIVLSDELNHASIIDGLRLTKATK- 141 (385)
T ss_pred HHHhCC---CcEEEECcHHHHHHHHHHHhC-----------CC-----------CCEEEEEccccHHHHHHHHhcCCce-
Confidence 998773 466778899999998887652 11 2345566778887665544322100
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
..++. .| .+.+++.+.+
T Consensus 142 ---------------------------~~~~~--------------------------~d--------~~~l~~~l~~-- 158 (385)
T TIGR01825 142 ---------------------------KIYKH--------------------------AD--------MDDLDRVLRE-- 158 (385)
T ss_pred ---------------------------EEeCC--------------------------CC--------HHHHHHHHHh--
Confidence 00000 01 1234444432
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc--ccccCCcchhhhcCCCCc----EEE
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVPD----IAC 686 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv~PD----ivt 686 (863)
....+..+|+++++ ++..|.+.+ +++|.++|++||+++|+||+++. ++++|. +...++++.+| +.+
T Consensus 159 --~~~~~~~~v~~~~v-~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~s 230 (385)
T TIGR01825 159 --NPSYGKKLIVTDGV-FSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVGT 230 (385)
T ss_pred --hccCCCeEEEEecC-CcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEEe
Confidence 11235788899997 899897766 89999999999999999999953 444443 34455666666 358
Q ss_pred eccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~ 765 (863)
|||++++ +.|++++++++++.+..... .+..+...+|..++++.++|+.+++ .+..+++.++.+++.+.|
T Consensus 231 ~sK~~~~---~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L-- 301 (385)
T TIGR01825 231 LSKAIGV---VGGYAAGHKELIEYLKNRAR----PFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGL-- 301 (385)
T ss_pred ccHHhhc---CCCEEecCHHHHHHHHHhCc----cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--
Confidence 9999952 34668889999988764211 0112334678889999999987743 344555555555554433
Q ss_pred HHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-------cC-CEEEEecCCCCcHH
Q 002941 766 ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------LG-NVIYLMCGPCSSPE 837 (863)
Q Consensus 766 ~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-------~g-~~lr~~ppl~~t~e 837 (863)
.+. ..+. +...+.++.+.+... .....+++.|+++||++++ .+ +.+|++|++.+++|
T Consensus 302 --~~~--g~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e 366 (385)
T TIGR01825 302 --GKL--GYDT---GGSETPITPVVIGDE--------KAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKD 366 (385)
T ss_pred --HHc--CCCC---CCCCCCEEEEEECCH--------HHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHH
Confidence 221 2221 123344666654321 1246788999999999853 12 68999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEF 853 (863)
Q Consensus 838 eid~~v~~L~~~l~~l 853 (863)
++++++++|+++++++
T Consensus 367 ~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 367 DLDQALDAYEKVGKEL 382 (385)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988653
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-24 Score=241.94 Aligned_cols=332 Identities=14% Similarity=0.110 Sum_probs=226.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
+++++.| ++++|..+||+|++|+.++++++++.. .....++...+|+++|++++|. +..++++||++||+
T Consensus 47 ~~~~~~s---n~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~---~~~i~~~sG~~a~~ 120 (410)
T PRK13392 47 RVTIWCS---NDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK---ESALLFTSGYVSND 120 (410)
T ss_pred eEEEEEC---CCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC---CCEEEECcHHHHHH
Confidence 7888887 788888789999999999999987532 1112345788999999999983 57788889999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+.. + ..+|..+..+|++...++..++....
T Consensus 121 ~~i~~l~~~~-------~-------------g~~vi~~~~~h~s~~~~~~~~g~~~~----------------------- 157 (410)
T PRK13392 121 AALSTLGKLL-------P-------------GCVILSDALNHASMIEGIRRSGAEKQ----------------------- 157 (410)
T ss_pred HHHHHHhcCC-------C-------------CCEEEEehhhhHHHHHHHHHcCCeEE-----------------------
Confidence 9999552100 1 23666677799987665544321100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
. ++. +| .+.+++.++. ...++..+|++|++ +++.|.
T Consensus 158 -----~--~~~------------------------~d--------~~~l~~~l~~----~~~~~t~~v~i~~~-~n~tG~ 193 (410)
T PRK13392 158 -----V--FRH------------------------ND--------LADLEEQLAS----VDPDRPKLIAFESV-YSMDGD 193 (410)
T ss_pred -----E--EeC------------------------CC--------HHHHHHHHHh----ccCCCCEEEEEeCC-CCCCcc
Confidence 0 000 11 0123334432 12245678999997 999998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCC--CCcEE--EeccccCCCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--t~sKgLggG~~Pigav~~~~~i~~ 709 (863)
+.+ +++|.++|++||++||+||+|+ |+ |+.|.++ .++.++ .+|++ +|||++|. +.|++++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~ 265 (410)
T PRK13392 194 IAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLID 265 (410)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHH
Confidence 877 9999999999999999999997 43 5666544 455555 46877 89998863 2245788999999
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~-l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
.+..... .+.++.+.+|++++++.++|+.+++.. ..+++.++.+++.+ .+.+. ..+ -..+.+.++.
T Consensus 266 ~l~~~~~----~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~----~L~~~--g~~---~~~~~~~~~~ 332 (410)
T PRK13392 266 FVRSFAP----GFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKA----KLNAN--GIP---VMPSPSHIVP 332 (410)
T ss_pred HHHHhCc----chhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHc--CCC---CCCCCCCEEE
Confidence 7764211 123466778899999999999875432 23334444444443 32221 122 1245566766
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+... ..+.++++.|+ ++||++.+. + ..+|+++++.+|++|+|+++++|+++++++
T Consensus 333 i~~~~~--------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 333 VMVGDP--------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred EEeCCH--------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 665422 13567888887 679999863 2 689999999999999999999999987654
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=226.78 Aligned_cols=328 Identities=15% Similarity=0.058 Sum_probs=220.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-------ccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeC
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-------HVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-------~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~ 468 (863)
+++||.| |++||++.||++.+++.+++.+++ ... .....++...++.++|+++++. +.+++++
T Consensus 5 ~~~~~~s---~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~ 78 (370)
T PRK05937 5 LSIDFVT---NDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVP 78 (370)
T ss_pred ceEEeEC---CCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 6888888 899999999999999999999873 221 1112567899999999999984 5789999
Q ss_pred ChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCccc
Q 002941 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (863)
Q Consensus 469 SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~ 548 (863)
||+.||...+. + + .+ +.++|..+..+|+++..++.... .+.
T Consensus 79 sG~~a~~~~~~-~---~-------~~-----------~~d~ii~d~~~H~sv~~~~~~~~--~~~--------------- 119 (370)
T PRK05937 79 SGYMANLGLCA-H---L-------SS-----------VTDYVLWDEQVHISVVYSLSVIS--GWH--------------- 119 (370)
T ss_pred ChHHHHHHHHH-H---h-------CC-----------CCCEEEEEhhhhHHHHHHHHHcC--Cce---------------
Confidence 99999853222 1 1 11 15699999999999888765421 000
Q ss_pred CCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
+.++. +| .+.+++.|+.. ...+++..+|+++++
T Consensus 120 -------------~~~~~------------------------~d--------~~~l~~~l~~~--~~~~~~~~~v~v~~v 152 (370)
T PRK05937 120 -------------QSFRH------------------------ND--------LDHLESLLESC--RQRSFGRIFIFVCSV 152 (370)
T ss_pred -------------EEecC------------------------CC--------HHHHHHHHHhh--hccCCCcEEEEEecC
Confidence 00110 11 13455555431 011123456889998
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCC---CCcEEEeccccCCCCCCceeeec
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC---VPDIACYGKLLTGGVIPLAATLA 703 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv---~PDivt~sKgLggG~~Pigav~~ 703 (863)
+++.|.+.| +++|.++|+++|++|++||+|+ | +|++|.++. ..++. .+|+.||||++|. +.+++++
T Consensus 153 -~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tlsK~~g~---~G~~vl~ 223 (370)
T PRK05937 153 -YSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYSKALGS---MGAALLS 223 (370)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEechhhhhc---CceEEEc
Confidence 999999888 9999999999999999999996 3 555665432 22332 3678899999874 1245677
Q ss_pred cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
.+++.+.+..... .+.++.+.+|.+++++.++++++++.. +..++..+.+++++.+. +... +.
T Consensus 224 ~~~~~~~~~~~~~----~~~~s~~~~~~~~~a~~aal~~l~~~~--~~~~~~l~~l~~~l~~~----l~~~-------~~ 286 (370)
T PRK05937 224 SSEVKQDLMLNSP----PLRYSTGLPPHLLISIQVAYDFLSQEG--ELARKQLFRLKEYFAQK----FSSA-------AP 286 (370)
T ss_pred CHHHHHHHHHhCC----CCeecCCCCHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHh----cCCC-------CC
Confidence 7776665542111 234556678999999999999986432 22333334444433222 2111 12
Q ss_pred ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
|....+.+... ....+.+.|.++||++.. ....+|++++..+|+||||+++++|++.++++.
T Consensus 287 ~~~~~i~~~~~---------~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 287 GCVQPIFLPGI---------SEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred CCEEEEEeCCh---------hHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 33344555322 245688889999998874 357899999999999999999999999987764
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-23 Score=211.29 Aligned_cols=344 Identities=16% Similarity=0.141 Sum_probs=245.1
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (863)
.+|+++.|--..+...+ |..|.|++ +++||.++||+|++|..+++++++... |.+++.+.+..|+.+|
T Consensus 50 rVi~s~q~p~i~v~G~~-----k~ilnFca---NnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki 121 (417)
T KOG1359|consen 50 RVITSRQGPTIQVKGSD-----KKILNFCA---NNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI 121 (417)
T ss_pred eEEeecccceEEEeccc-----cceeeecc---cccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence 46777544333333333 36888886 899999999999999999999987653 5567889999999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+.+.+. +..+.++|+.+||..++-..+ +. ..-|..+.-.|.+.+..+.+.- .|
T Consensus 122 Aqfh~r---ED~ilypscfdANag~feail----------~p------------edAvfSDeLNhASIIdGirLck--ry 174 (417)
T KOG1359|consen 122 AQFHGR---EDTILYPSCFDANAGAFEAIL----------TP------------EDAVFSDELNHASIIDGIRLCK--RY 174 (417)
T ss_pred HHHhCC---CceEEeccccccchHHHHHhc----------Ch------------hhhhhccccccchhhhhhHHHh--hh
Confidence 998774 678899999999998887652 11 2344556667888777665532 11
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
++. | ..+++..+..
T Consensus 175 ~h~--------------------------------------------------------d--------v~~l~~~l~~-- 188 (417)
T KOG1359|consen 175 RHV--------------------------------------------------------D--------VFDLEHCLIS-- 188 (417)
T ss_pred ccc--------------------------------------------------------h--------hHHHHHHHHH--
Confidence 110 0 0112222211
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCC--CCcEE--E
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGC--VPDIA--C 686 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv--~PDiv--t 686 (863)
...-+.-.|+.+.+ +++.|.+.| |++|.+|++|||.||.+||.| +-|.+|. .+..|.+|+ .+|++ |
T Consensus 189 --a~k~r~klv~TDg~-FSMDGdiaP----l~ei~~La~kYgaLlfiDecH-aTgf~G~tGrGt~E~~~vm~~vdiinsT 260 (417)
T KOG1359|consen 189 --ACKMRLKLVVTDGV-FSMDGDIAP----LEEISQLAKKYGALLFIDECH-ATGFFGETGRGTAEEFGVMGDVDIINST 260 (417)
T ss_pred --hhhheEEEEEecce-eccCCCccc----HHHHHHHHHhcCcEEEEeecc-cceeecCCCCChHHHhCCCCcceehhhh
Confidence 11346778999998 999999999 999999999999999999999 4556776 456778887 57776 8
Q ss_pred eccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh-cChhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF-KDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l-~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
+||++||. .-|++.+++++.+.++..++ ++. ++.+-.|.....+.++++.+ .......+...+.+++++.+..
T Consensus 261 LgKAlGga--~GGyttgp~~li~llrqr~R--pyl--FSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~ 334 (417)
T KOG1359|consen 261 LGKALGGA--SGGYTTGPKPLISLLRQRSR--PYL--FSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEA 334 (417)
T ss_pred hhhhhcCC--CCCCccCChhHHHHHHhcCC--cee--ecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999841 23449999999999987543 344 44445666666677778765 4555667777777777775543
Q ss_pred HHHHHH-hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe--------cCCEEEEecCCCCcH
Q 002941 766 ELIQQI-SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP--------LGNVIYLMCGPCSSP 836 (863)
Q Consensus 766 ~l~~~~-~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p--------~g~~lr~~ppl~~t~ 836 (863)
...... +.|| +..+.+.+. +.+..+++.|+++|+++.. ...++|+..+..||+
T Consensus 335 aGftIsg~~hP----------I~pv~lGda--------~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~ 396 (417)
T KOG1359|consen 335 AGFTISGASHP----------ICPVMLGDA--------RLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTE 396 (417)
T ss_pred cCceecCCCCC----------ccceecccH--------HHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCH
Confidence 322211 1233 455556544 3788899999999999952 237899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
||||++++++.++.+-+
T Consensus 397 edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 397 EDIDRLIEAFSEVGRFL 413 (417)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998887643
|
|
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=208.23 Aligned_cols=165 Identities=28% Similarity=0.391 Sum_probs=140.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC-CCchhHHHhhccccccccCCCccccccchhhhh
Q 002941 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRFLFTKLPSLSLRRNFPSSLILSNSILFS 119 (863)
Q Consensus 41 ~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (863)
||+||++++|||+++++|+++|+ ++|++|+++||++++... +.|..++.+... .
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~-----~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~-~------------------- 55 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLK-----KAGYSVGYYKPVQTGIEKTNSDALLLQNISG-T------------------- 55 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHH-----HCCCcEEEEEeeeeCCCCCchHHHHHHHHcC-C-------------------
Confidence 79999999999999999999999 999999999999998653 344455443321 1
Q ss_pred hhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHHHH
Q 002941 120 SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIE 199 (863)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~~~ 199 (863)
.. +....+++.+..|.+|+.+...+ +.....+++.+
T Consensus 56 ------------~~-------------------------------~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~i~~ 91 (166)
T TIGR00347 56 ------------AL-------------------------------DWDEVNPYAFALPLSPHIAADQE-GRPIDLEELSK 91 (166)
T ss_pred ------------CC-------------------------------chhccCCeeeCCCCChHHHHHHh-CCCCCHHHHHH
Confidence 00 01124567888899999888776 66788888999
Q ss_pred HHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCC
Q 002941 200 TLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279 (863)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~ 279 (863)
.++++.++| |++||||+||+.+|+....+++|+++.++.|||||++.+.+.++++..+++.++++|+
T Consensus 92 ~~~~l~~~~-------------D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 92 HLRTLEQKY-------------DFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred HHHHHHhcC-------------CEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 998877766 9999999999999988778999999999999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 002941 280 DVVAVVFE 287 (863)
Q Consensus 280 ~v~gvi~n 287 (863)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 99999998
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-21 Score=217.67 Aligned_cols=345 Identities=15% Similarity=0.117 Sum_probs=224.3
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.++||.+|+ .|+|++++ .++||..+|++.+++.++++++.+.. +..+..+...++++.|+++++.
T Consensus 31 ~~~~~~~~~~g~----~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~- 102 (397)
T PRK06939 31 PQGADITVADGK----EVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT- 102 (397)
T ss_pred CCCceEEecCCC----eEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC-
Confidence 788999999999 99999874 45787678999999999998865422 1123456778899999998873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..+++++|++|+..+++..++ .| ..||+.+..|.+. ..++...+..
T Consensus 103 --~~~i~~tsG~~a~~~~~~~l~~---------~g------------d~vi~~~~~~~~~-~~~~~~~~~~--------- 149 (397)
T PRK06939 103 --EDAILYSSCFDANGGLFETLLG---------KE------------DAIISDALNHASI-IDGVRLCKAK--------- 149 (397)
T ss_pred --CcEEEEcChHHHHHHHHHHhCC---------CC------------CEEEEEhhhhHHH-HHHHHhcCCc---------
Confidence 3566677889999998865421 12 4566666555443 2222221100
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+ +.+|. .| .+.+++.++..+ ....+
T Consensus 150 -------------------~--~~~~~------------------------~d--------~~~l~~~i~~~~--~~~~~ 174 (397)
T PRK06939 150 -------------------R--YRYAN------------------------ND--------MADLEAQLKEAK--EAGAR 174 (397)
T ss_pred -------------------e--EEeCC------------------------CC--------HHHHHHHHHhhh--ccCCC
Confidence 0 00110 11 123344443210 01235
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCC--CCcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--t~sKgLgg 693 (863)
+.+|+++++ ++..|...+ +++|.++|++||++||+||+|. |+ ++.|. +....+++ .+|++ ++||+++|
T Consensus 175 ~~~v~~~~v-~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~g 248 (397)
T PRK06939 175 HKLIATDGV-FSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-GTVEHFGVMDRVDIITGTLGKALGG 248 (397)
T ss_pred CeEEEEecC-cCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-CHHHHcCCCCCCcEEEEECHHHhCc
Confidence 788999997 888887544 8999999999999999999994 33 33333 23445565 46777 78999965
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
.++|++++++++++.+..... . ...+.+.+|..+++++++++.+++ +++.+++.++.+.+.+ .+.+
T Consensus 249 --~r~G~v~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~----~L~~--- 315 (397)
T PRK06939 249 --ASGGYTAGRKEVIDWLRQRSR--P--YLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFRE----GMTA--- 315 (397)
T ss_pred --cCceEEEeCHHHHHHHHHhCc--c--ccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHH---
Confidence 478999999999998864211 1 112233467778888899988754 2333444444444433 3322
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
++. ..+.+.|.++.+.+... ....++++.|.++||.+.+. .+.+|+.++..+++++++++++
T Consensus 316 -~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~ 385 (397)
T PRK06939 316 -AGF-TLGPGEHPIIPVMLGDA--------KLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAID 385 (397)
T ss_pred -cCC-CcCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence 221 11234566665554321 13567899999999988642 2579998888899999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|.++++++
T Consensus 386 ~L~~~~~~~ 394 (397)
T PRK06939 386 AFEKVGKEL 394 (397)
T ss_pred HHHHHHHHh
Confidence 999888764
|
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=234.47 Aligned_cols=172 Identities=12% Similarity=0.134 Sum_probs=133.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccch
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
+|+.|||+||+||||||+||++|+++|+ ++ |++||| |++. .| +
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~-----~~---v~~fK~---GpD~-id----------~--------------- 279 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLR-----GK---VFVAKI---GPDV-RD----------I--------------- 279 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHH-----hC---eEEEcC---CCCh-hh----------c---------------
Confidence 5889999999999999999999999998 55 999995 4211 11 0
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCC-CCh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV-VGD 194 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~-~~~ 194 (863)
...++.|+.|+||+.++..+ +.. +..
T Consensus 280 ----------------------------------------------------~p~~~~~~~~~sp~~a~n~~-~d~~~~~ 306 (476)
T PRK06278 280 ----------------------------------------------------VPSLYLLREKMTKYNSIKIG-DRGWSDV 306 (476)
T ss_pred ----------------------------------------------------CCcceecccccCChHHHhhc-CCcccCH
Confidence 02357889999999999976 443 455
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCC---CcHhHHhhhcCCCEEEEECCCCCcHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG---SLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~---~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (863)
++.++.+.. . .+|++|||||||+++|+..+ .+++|||+.+++|||||++.++|+|++++.++
T Consensus 307 ~~~~~~~~~--~-------------~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i~~~~~~i 371 (476)
T PRK06278 307 EEFLEFVKN--S-------------DYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGIEGAFVES 371 (476)
T ss_pred HHHHHHHHh--c-------------CCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChHHHHHHHH
Confidence 555554322 1 24999999999999995433 58899999999999999999999999998854
Q ss_pred ----HHHHhCCCcEEEEEEcCCCCC-CHHHHHHhhc-CCCCeeecCC
Q 002941 272 ----ESLKLRGYDVVAVVFEDHGLV-NEVPLMSYLR-NRVPVLVLPP 312 (863)
Q Consensus 272 ----~~~~~~~~~v~gvi~n~~~~~-~~~~~~~~~~-~~~pvl~~p~ 312 (863)
+++++++++|+|||+|++... ....+++.++ +++||||.|+
T Consensus 372 ~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 372 MAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred HHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 567778999999999999543 3344455443 5999999755
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-21 Score=214.33 Aligned_cols=335 Identities=13% Similarity=0.092 Sum_probs=220.0
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~ 459 (863)
+.|.++. .+|+ +|+|+.++ +++|++.+|+|++|+.+++.+++.... ..+.++...++.++|+++.+.
T Consensus 6 ~~~~~~~-~~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~- 76 (360)
T TIGR00858 6 GPGPEVV-RDGR----RLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT- 76 (360)
T ss_pred CCCCeEE-ECCc----eEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-
Confidence 5667887 6888 99999996 578976789999999999988654211 112356788899999998873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..+++++|++++..+++.+. . .| ..|+. ...+|+....++...+..
T Consensus 77 --~~~i~~~~G~~~~~~~l~~~~-----~----~g------------d~v~~-~~~~~~~~~~~~~~~g~~--------- 123 (360)
T TIGR00858 77 --EAALLFSSGYLANVGVISALV-----G----KG------------DLILS-DALNHASLIDGCRLSGAR--------- 123 (360)
T ss_pred --CCEEEECchHHHHHHHHHHhC-----C----CC------------CEEEE-EccccHHHHHHHHhcCCc---------
Confidence 457777889999988776541 0 11 34554 455666554443322100
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+..++. .| .+.+++.+.. ....+
T Consensus 124 -------------------~~~~~~--------------------------~d--------~~~l~~~~~~----~~~~~ 146 (360)
T TIGR00858 124 -------------------VRRYRH--------------------------ND--------VEHLERLLEK----NRGER 146 (360)
T ss_pred -------------------eEEecC--------------------------CC--------HHHHHHHHHH----cccCC
Confidence 000000 11 1334555542 11134
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCCc-----EEEeccccC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD-----IACYGKLLT 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PD-----ivt~sKgLg 692 (863)
.++++++++ ++..|...+ +++|.++|++||+++|+||+|+ +|+.+. ......+++.|| +.+++|+++
T Consensus 147 ~~~v~~~~~-~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~ 220 (360)
T TIGR00858 147 RKLIVTDGV-FSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG 220 (360)
T ss_pred CeEEEEeCC-ccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEechhhhh
Confidence 688899997 888886665 8999999999999999999995 555543 223455677665 558899886
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+ +.|++++++++++.+..... .+..+.+.++.+++++.++++.++.. ...+++.++.+++.+.| .
T Consensus 221 ~---~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L----~--- 286 (360)
T TIGR00858 221 S---YGAYVAGSQALIDYLINRAR----TLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGL----E--- 286 (360)
T ss_pred c---cCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH----H---
Confidence 4 33678899999888753211 12234456788888999999877542 33344444444444432 2
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v 843 (863)
+++. .-....|.++.+.+... ....++.+.|.++||++.+. ++.+|++++..++++++++++
T Consensus 287 -~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l 356 (360)
T TIGR00858 287 -ALGF-TLMPSCTPIVPVIIGDN--------ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLA 356 (360)
T ss_pred -HcCC-ccCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHH
Confidence 2221 11234566777776432 12567899999999999642 258999999889999999999
Q ss_pred HHHH
Q 002941 844 LKLY 847 (863)
Q Consensus 844 ~~L~ 847 (863)
++|+
T Consensus 357 ~~l~ 360 (360)
T TIGR00858 357 EALK 360 (360)
T ss_pred HhhC
Confidence 8763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=238.59 Aligned_cols=207 Identities=15% Similarity=0.071 Sum_probs=140.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc----cCCCC----CCchhHHHhhccccccccCCCcccc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ----TGYPH----DSDSRFLFTKLPSLSLRRNFPSSLI 111 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~----~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (863)
|||+||+|+||||+||++|++.|+ ++|++|+||||+. ++... .++...++..+.++
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~-----~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~----------- 64 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILA-----RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI----------- 64 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHH-----hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-----------
Confidence 699999999999999999999999 9999999999984 22211 12333333332222
Q ss_pred ccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhc-CC
Q 002941 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES-GG 190 (863)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~-~~ 190 (863)
.+...++|..|+|.. + ..........|++|+.+.+... +.
T Consensus 65 ------------------~~~~~~nPv~lk~~~---~------------------~~s~~i~~g~~~~~~~a~~~~~~~~ 105 (475)
T TIGR00313 65 ------------------EPSVHMNPILLKPKG---N------------------FTSQVIVHGRAVGDMNYQEYYKNKV 105 (475)
T ss_pred ------------------CchhccCCEEeCcCC---C------------------CcCcEEEcCcccCcCCHHHHhhhhh
Confidence 011122333333220 0 0001122223455655533220 33
Q ss_pred CCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccc--cCCCCCcHhHHhhhcCCCEEEEECCCCC-cHHHH
Q 002941 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVAS--PGPSGSLQCDLYRPFRLPGILVGDGRLG-GISGT 267 (863)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~--p~~~~~~~~dla~~l~~pvilV~~~~~g-~i~~~ 267 (863)
.+.+++|.+.+.++.+++ |++|||||||+++ +...+.+++++|+.+++|||||++.++| .++++
T Consensus 106 ~~~~~~i~~~~~~l~~~~-------------D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVILV~d~~~g~~~a~i 172 (475)
T TIGR00313 106 DFFLKAIKESLEILAREY-------------DYVVIEGAGSPAEINLLKRDLANMRIAELANADAILVADIDRGGVFASI 172 (475)
T ss_pred HHHHHHHHHHHHHHHhcC-------------CEEEEECCCCccccccCcCCchHHHHHHHhCCCEEEEEeCCccHHHHHH
Confidence 567888988998877766 9999999999987 3446788999999999999999999888 45777
Q ss_pred HHHHHHHHhC-CCcEEEEEEcCCCCC------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 268 ISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 268 ~~~~~~~~~~-~~~v~gvi~n~~~~~------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
+.+++.+... +..++|||+|++..+ +.+.++++ .++|||| +|+.+.+
T Consensus 173 ~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~--~gipvLG~ip~~~~l 227 (475)
T TIGR00313 173 YGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEEL--TGIPVLGVLPYDENL 227 (475)
T ss_pred HHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHh--hCCCEEEEecCCCcC
Confidence 8888887654 368999999998542 12233443 5899999 9998776
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=213.02 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=225.4
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCC---CCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPE---NVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~---~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.++++.+|+ +|+|+.++ .++|+..+|++++++.+++.+++.. .... +..+...+|.++|+++++.
T Consensus 27 ~~~~~~~~~~g~----~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~- 98 (393)
T TIGR01822 27 PQGADIRVADGR----EVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGT- 98 (393)
T ss_pred CCCceEEecCCc----eEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-
Confidence 566788888888 99999985 6788867999999999999886432 1111 3356778999999999984
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+.++.++||++|+..++...++ .| ..||+-+. +|.....++.+.+...
T Consensus 99 --~~~ii~~~~~~a~~~~~~~l~~---------~g------------d~vi~~~~-~~~s~~~~~~~~~~~~-------- 146 (393)
T TIGR01822 99 --EDTILYASCFDANGGLFETLLG---------AE------------DAIISDAL-NHASIIDGVRLCKAKR-------- 146 (393)
T ss_pred --CcEEEECchHHHHHHHHHHhCC---------CC------------CEEEEecc-ccHHHHHHHHhcCCce--------
Confidence 4667678999999976654310 11 45666554 4444333222211000
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+.++ ..| .+.+++.+.+.. ....+
T Consensus 147 ----------------------~~~~------------------------~~d--------~~~l~~~i~~~~--~~~~~ 170 (393)
T TIGR01822 147 ----------------------YRYA------------------------NND--------MADLEAQLKEAR--AAGAR 170 (393)
T ss_pred ----------------------EEeC------------------------CCC--------HHHHHHHHHhhh--hcCCC
Confidence 0000 011 133445554310 11225
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc--chhhhcCC--CCcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGC--VPDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv--~PDiv--t~sKgLgg 693 (863)
...|+++++ +++.|.+.+ +++|.++|++||++||+||+| ++|..|.. +..+..++ .+|++ +++|+++|
T Consensus 171 ~~~v~~~~v-~~~tG~~~~----l~~i~~la~~~~~~li~De~~-~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g 244 (393)
T TIGR01822 171 HRLIATDGV-FSMDGVIAP----LDEICDLADKYDALVMVDECH-ATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG 244 (393)
T ss_pred ceEEEEeCC-ccCCCCcCC----HHHHHHHHHHcCCEEEEECCc-cccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC
Confidence 678999997 899998876 899999999999999999999 45544431 23344555 36777 68999975
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+++|++++++++++.+..... . +.++.+.+|..+++++++|+.+++ ++..+++.++.+++.+.| .+.
T Consensus 245 --~r~G~~~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L----~~~-- 312 (393)
T TIGR01822 245 --ASGGFTTARKEVVELLRQRSR--P--YLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERM----EAA-- 312 (393)
T ss_pred --CCcEEEEeCHHHHHHHHHhCc--c--ceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHc--
Confidence 578999999999998764211 1 112223467777888999987753 334455555555544433 221
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~ 844 (863)
.... ..+.+.++.+.+.+. ..+..+++.|.++||++... + ..+|+++++.+|++||+++++
T Consensus 313 g~~~---~~~~~~~~~i~~~~~--------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~ 381 (393)
T TIGR01822 313 GFDI---KPADHPIIPVMLYDA--------VLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVE 381 (393)
T ss_pred CCCC---CCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence 1211 122455666655431 13567889999999988631 2 578999999999999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|.++++++
T Consensus 382 ~l~~~~~~~ 390 (393)
T TIGR01822 382 AFTRIGREL 390 (393)
T ss_pred HHHHHHHHh
Confidence 999887654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=226.71 Aligned_cols=174 Identities=17% Similarity=0.180 Sum_probs=130.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|++|||+||+|++|||+||+||+++|+ ++|.+|.+||| |++. .|..++. .+.+.+++|
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~-----~~g~~v~~~K~---Gpd~-iD~~~~~-~~~g~~~~n------------ 58 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALE-----DAGYAVQPAKA---GPDF-IDPSHHE-AVAGRPSRT------------ 58 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEEee---CCCC-CCHHHHH-HHhCCCccc------------
Confidence 678999999999999999999999999 99999999996 6543 4554443 334442211
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
.+||.. ..+.
T Consensus 59 ----------------------------------------------------ld~~~~------------------~~~~ 68 (433)
T PRK13896 59 ----------------------------------------------------LDPWLS------------------GEDG 68 (433)
T ss_pred ----------------------------------------------------CChhhC------------------CHHH
Confidence 223322 1233
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCc--HHHHHHHHHHH
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYESL 274 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~--i~~~~~~~~~~ 274 (863)
+.+.+.+ .. +|++||||+||++++ ...+++|||+.+++|||||++.++|+ ++++++++..+
T Consensus 69 i~~~~~~--~~-------------~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 69 MRRNYYR--GE-------------GDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred HHHHHHh--hc-------------CCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 4444332 11 499999999999976 34789999999999999999999995 67778887444
Q ss_pred Hh---CCCcEEEEEEcCCCCC-CHHHHHHhhcCCCCeee-cCCCCCCCch
Q 002941 275 KL---RGYDVVAVVFEDHGLV-NEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 275 ~~---~~~~v~gvi~n~~~~~-~~~~~~~~~~~~~pvl~-~p~~~~~~~~ 319 (863)
.. ++++|+|||+|++... +.+.+++.+..++||+| ||..+++.-+
T Consensus 132 ~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~~~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAHGGRHADGIRDALPDELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHhccCCCcEEEEEEECCCcHHHHHHHHHhhhhcCceeEecccCCCCCCC
Confidence 43 5899999999999654 45566777666899999 9998887643
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-20 Score=212.94 Aligned_cols=353 Identities=14% Similarity=0.100 Sum_probs=225.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCC-CcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHH
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVM----FPENVYEPALECAE 450 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~-~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae 450 (863)
..++++.+....+-+...|+. ++.+++.| +++||.+ .++.+.+++.+++++++... ....+++.+.+|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--~~~~n~~s---~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~ 153 (489)
T PLN02483 79 FDVVERVSNDNNKTLKRTTKT--RRCLNLGS---YNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEE 153 (489)
T ss_pred EEEEEeecCCCCceEEecCCC--ceEEEeec---CCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHH
Confidence 345666544433333222321 38899998 8999985 36788999999999987532 11235788999999
Q ss_pred HHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC
Q 002941 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (863)
Q Consensus 451 ~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~ 530 (863)
+|+++++. +..+++++|+.+|..++...+. .| ..|| .+..+|.+...++...|..
T Consensus 154 ~lA~~~g~---~~ai~~~~G~~an~~~i~al~~---------~G------------d~Vi-~d~~~h~s~~~~~~~~Ga~ 208 (489)
T PLN02483 154 LVARFVGK---PAAIVFGMGYATNSTIIPALIG---------KG------------GLII-SDSLNHNSIVNGARGSGAT 208 (489)
T ss_pred HHHHHhCC---CcEEEECCHHHHHHHHHHHhCC---------CC------------CEEE-EcchhhHHHHHHHHHcCCe
Confidence 99999984 4556667899999877665411 11 3455 5555555544433332211
Q ss_pred CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhc
Q 002941 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (863)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (863)
...+|. +|. +++++.+++
T Consensus 209 ------------------------------v~~~~~------------------------~d~--------~~le~~l~~ 226 (489)
T PLN02483 209 ------------------------------IRVFQH------------------------NTP--------SHLEEVLRE 226 (489)
T ss_pred ------------------------------EEEEeC------------------------CCH--------HHHHHHHHh
Confidence 001110 111 223333332
Q ss_pred CCCC-----CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCCCC-
Q 002941 611 NPGL-----KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP- 682 (863)
Q Consensus 611 ~i~~-----~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~P- 682 (863)
.+.. ..+.....|++|++ .++.|.+.+ +++|.++|++||++||+||+|+ .+|++|.+ ..+++++.|
T Consensus 227 ~i~~~~p~t~~p~~k~livve~v-~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~ 300 (489)
T PLN02483 227 QIAEGQPRTHRPWKKIIVIVEGI-YSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPA 300 (489)
T ss_pred hhhccccccccCCceEEEEECCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcc
Confidence 1111 11233568999998 899998876 9999999999999999999995 23445543 567778755
Q ss_pred --cEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCC--CccHHHHHHHHHHHHHhcCh-------hhH
Q 002941 683 --DIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY--SAHALGCAAAAKSIKWFKDP-------QTN 749 (863)
Q Consensus 683 --Div--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~--~~~pla~AAalAaL~~l~~~-------~l~ 749 (863)
|++ +|+|++++ +.|++++++++++.+... .++++| +.+|..++++.++|+++.++ +..
T Consensus 301 ~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~~------~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~ 371 (489)
T PLN02483 301 DVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKRT------CPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKL 371 (489)
T ss_pred cCcEEEEecchhccc---CceEEEcCHHHHHHHHHh------CccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHH
Confidence 666 89998862 235688999999998742 123333 45788888899999987522 122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC----
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---- 823 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---- 823 (863)
++++++.+++.+ .| .+... .+. ..+.++++.+.... ....+++.|+++||++.+.+
T Consensus 372 ~~l~~~~~~l~~----~L----~~~G~--~v~~~~~sp~~~l~l~~~~--------~~~~~~~~Ll~~GI~v~~~~fp~~ 433 (489)
T PLN02483 372 AQIRENSNFFRS----EL----QKMGF--EVLGDNDSPVMPIMLYNPA--------KIPAFSRECLKQNVAVVVVGFPAT 433 (489)
T ss_pred HHHHHHHHHHHH----HH----HHCCC--cccCCCCCCEEEEEECCHH--------HHHHHHHHHHHCCcEEeeeCCCCC
Confidence 333443333333 32 22221 111 12356666654321 35578999999999998421
Q ss_pred ----CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 824 ----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 824 ----~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+|++.++.+|+|+|++++++|+++++.+
T Consensus 434 p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 434 PLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999988765
|
|
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-22 Score=218.57 Aligned_cols=176 Identities=20% Similarity=0.219 Sum_probs=134.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (863)
++|+|+||.+|+|||+||+||+++|+ ++|++|++|| .|++.. |. .+++.+++.++||
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~-----~rg~~VqpfK---vGPDYI-DP-~~H~~atG~~srN------------- 57 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALR-----RRGLKVQPFK---VGPDYI-DP-GYHTAATGRPSRN------------- 57 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHH-----hcCCcccccc---cCCCcc-Cc-hhhhHhhCCccCC-------------
Confidence 46999999999999999999999999 9999999999 454433 33 4566667877666
Q ss_pred hhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHH
Q 002941 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (863)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~ 197 (863)
.++|. ...+.|
T Consensus 58 ---------------------------------------------------LD~~m------------------m~~~~v 68 (451)
T COG1797 58 ---------------------------------------------------LDSWM------------------MGEEGV 68 (451)
T ss_pred ---------------------------------------------------Cchhh------------------cCHHHH
Confidence 33444 344566
Q ss_pred HHHHHHHHHccccccccccccCCCceEEEeCCCcccccCC---CCCcHhHHhhhcCCCEEEEECCCCC--cHHHHHHHHH
Q 002941 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLPGILVGDGRLG--GISGTISAYE 272 (863)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~---~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~~~ 272 (863)
.+.+.+..++ .|+.||||++|++.... +..+.+++|+.|++|||||++.+.- ++..++..+.
T Consensus 69 ~~~f~~~~~~-------------adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~ 135 (451)
T COG1797 69 RALFARAAAD-------------ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFK 135 (451)
T ss_pred HHHHHHhcCC-------------CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHH
Confidence 6666665555 49999999999998843 4678999999999999999997733 3334444444
Q ss_pred HHHhCCCcEEEEEEcCCC-CCCHHHHHHhhc--CCCCeee-cCCCCCCCch
Q 002941 273 SLKLRGYDVVAVVFEDHG-LVNEVPLMSYLR--NRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~-~~~~~~~~~~~~--~~~pvl~-~p~~~~~~~~ 319 (863)
.+. ..+++.|||+|++. +.+.+.+++.++ +++||+| ||..+++.-+
T Consensus 136 ~fd-p~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 136 HFD-PDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred hcC-CCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 443 46899999999995 456667777766 5799999 9999988644
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=199.39 Aligned_cols=320 Identities=16% Similarity=0.122 Sum_probs=234.4
Q ss_pred CCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhc
Q 002941 414 DATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (863)
Q Consensus 414 Gh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~ 489 (863)
|.+.||+|.+|+.+.+++++-.. ...+.+..+++|+.+|+++..+ +..+.++|=.-||+..|-..-+..
T Consensus 183 gms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK---~aALlFsSCfVANDstLftLak~l---- 255 (570)
T KOG1360|consen 183 GMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK---EAALLFSSCFVANDSTLFTLAKKL---- 255 (570)
T ss_pred cccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC---cceeeeeeeeeccchHHHHHHHHC----
Confidence 33379999999999999987653 2345678899999999998774 567777788999999987652211
Q ss_pred cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 490 G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
...+|..+.+.|.+.+..+.-++.+.+
T Consensus 256 ----------------pgcei~SD~gNHASMI~GIrns~v~K~------------------------------------- 282 (570)
T KOG1360|consen 256 ----------------PGCEIFSDEGNHASMIQGIRNSRVPKH------------------------------------- 282 (570)
T ss_pred ----------------CCcEEeccccchHHHHHHhhhcCCcce-------------------------------------
Confidence 156888899999987765543332211
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel 649 (863)
.|.. || .++|++.|+. ..+...-.|-+|.| +++.|.++| +++|.++
T Consensus 283 ----------------IFrH-ND--------~~hL~~lL~~----~~~svPKivAFEtV-hSM~Gavcp----leelcDv 328 (570)
T KOG1360|consen 283 ----------------IFRH-ND--------LDHLEQLLQS----SPKSVPKIVAFETV-HSMDGAVCP----LEELCDV 328 (570)
T ss_pred ----------------eecc-CC--------HHHHHHHHHh----CCCCCCceEEEeee-eccCCCcCC----HHHHHHH
Confidence 0111 33 3567777764 33444456778998 999999999 9999999
Q ss_pred HHHcCCeEEEecccccccccCCcch--hhhcCC--CCcEE--EeccccC--CCCCCceeeeccHHHHHhhhcCCccceee
Q 002941 650 CQNRKIPVIFDEVFTGFWRLGVETT--ADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALL 721 (863)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv--~PDiv--t~sKgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~ 721 (863)
++|||++-.+|||| ..|-.|..++ -|+-|+ +-||+ |+||++| ||| +..+.++.|.++... -.
T Consensus 329 ah~yGAiTFlDEVH-AVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGY-----IAat~~LvDmiRSyA----aG 398 (570)
T KOG1360|consen 329 AHKYGAITFLDEVH-AVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGY-----IAATRKLVDMIRSYA----AG 398 (570)
T ss_pred HHHhCceeeeehhh-hhccccCCCCCccccCCcchhhhhcccchhhhcccccce-----ehhhhhHHHHHHHhc----Cc
Confidence 99999999999999 5777887544 566677 56887 8999998 787 889999999998633 23
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~ 798 (863)
+.+|.+..|.-++.|++++++++.++ ++..-+++..++++.|.+. ..|. +..-.-++.+.+.+..
T Consensus 399 FIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~------GiPV---i~~pSHIiPv~vgda~--- 466 (570)
T KOG1360|consen 399 FIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL------GIPV---IPNPSHIIPVRVGDAA--- 466 (570)
T ss_pred eEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc------CCcc---cCCCcceeeeeccCHH---
Confidence 66888999999999999999996432 3334445555665544322 2332 2233446666666542
Q ss_pred CCchHHHHHHHHHHH-HCCcEEEe-------cC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLLKKLR-EDGVYMRP-------LG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 799 ~~~~~~~~~l~~~l~-e~GV~~~p-------~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+..++..|+ ++|||+.. .| ..+|+.|.+.+|++.++.+++.|..+.+++.
T Consensus 467 -----l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 467 -----LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred -----HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5677788777 67999973 34 7999999999999999999999999888763
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=222.29 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=128.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhhh
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILF 118 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (863)
+|||+||+|+||||+||+||+++|+ ++|++|++||| |+ +..|..++... .+.+.+|
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L~-----~~G~~V~~fK~---g~-d~~D~~~~~~~-~g~~~~~-------------- 56 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKALS-----RRKLRVQPFKV---GP-DYIDPMFHTQA-TGRPSRN-------------- 56 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCceeEEcc---CC-CCCCHHHHHHH-hCCchhh--------------
Confidence 4899999999999999999999999 99999999998 33 22344443322 2221000
Q ss_pred hhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHHH
Q 002941 119 SSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198 (863)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~~ 198 (863)
.++|. .+.++|.
T Consensus 57 --------------------------------------------------ld~~~------------------~~~~~i~ 68 (449)
T TIGR00379 57 --------------------------------------------------LDSFF------------------MSEAQIQ 68 (449)
T ss_pred --------------------------------------------------CCccc------------------CCHHHHH
Confidence 12222 3467788
Q ss_pred HHHHHHHHccccccccccccCCCceEEEeCCCccc---ccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH--
Q 002941 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES-- 273 (863)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~---~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~-- 273 (863)
+.+.++.+++ |++||||+||++ +|+....+++|||+.+++|||||++.+ ++++++.++..
T Consensus 69 ~~~~~~~~~~-------------D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~~al~~~~ 133 (449)
T TIGR00379 69 ECFHRHSKGT-------------DYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSAAAIVLGY 133 (449)
T ss_pred HHHHHhcccC-------------CEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHHHHHHHHH
Confidence 8888876665 999999999999 677777899999999999999999987 56777766531
Q ss_pred -HHhCCCcEEEEEEcCCCCCC-HHHHHHhhc--CCCCeee-cCCCCCCCch
Q 002941 274 -LKLRGYDVVAVVFEDHGLVN-EVPLMSYLR--NRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 274 -~~~~~~~v~gvi~n~~~~~~-~~~~~~~~~--~~~pvl~-~p~~~~~~~~ 319 (863)
...++++|+|||+|++..+. ...+.+.++ .++||+| ||+.+++..+
T Consensus 134 ~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 134 RSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRGIPILGVIPRQQDLKVP 184 (449)
T ss_pred HhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEecCccccCCC
Confidence 22468999999999985432 222233332 5899999 9999887643
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-21 Score=221.45 Aligned_cols=178 Identities=17% Similarity=0.212 Sum_probs=132.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccch
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
.|+.|||+||+||||||+||++|+++|+ ++|++|++||| |+ +..|..++.. +.+.+.+|
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~-----~~G~~V~~fK~---Gp-d~~d~~~~~~-~~g~~~~~----------- 60 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR-----RRGLRVQPFKV---GP-DYIDPAYHTA-ATGRPSRN----------- 60 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCCcceeec---CC-CcccHHHHHH-HhCCCccc-----------
Confidence 3788999999999999999999999999 99999999998 53 2344444332 22221100
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~ 195 (863)
.++|. ...+
T Consensus 61 -----------------------------------------------------ld~~~------------------~~~~ 69 (451)
T PRK01077 61 -----------------------------------------------------LDSWM------------------MGEE 69 (451)
T ss_pred -----------------------------------------------------CCcee------------------CCHH
Confidence 12222 2356
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccC---CCCCcHhHHhhhcCCCEEEEECCCCC--cHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG---PSGSLQCDLYRPFRLPGILVGDGRLG--GISGTISA 270 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~---~~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~ 270 (863)
.|.+.+.++.+++ |++||||+||++++. ....+++|||+.+++|||||++.+.. ++++++.+
T Consensus 70 ~v~~~~~~~~~~~-------------D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~ 136 (451)
T PRK01077 70 LVRALFARAAQGA-------------DIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLG 136 (451)
T ss_pred HHHHHHHHhcccC-------------CEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHH
Confidence 7778887766665 999999999999863 35678999999999999999998864 45555566
Q ss_pred HHHHHhCCCcEEEEEEcCCCCC-CHHHHHHhhc-CCCCeee-cCCCCCCCch
Q 002941 271 YESLKLRGYDVVAVVFEDHGLV-NEVPLMSYLR-NRVPVLV-LPPLPQDSSN 319 (863)
Q Consensus 271 ~~~~~~~~~~v~gvi~n~~~~~-~~~~~~~~~~-~~~pvl~-~p~~~~~~~~ 319 (863)
+..+ .++++++|||+|++..+ ....+.+.++ .++||+| ||+.+.+..+
T Consensus 137 ~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~l~~p 187 (451)
T PRK01077 137 FATF-DPDVRIAGVILNRVGSERHYQLLREALERCGIPVLGALPRDAALALP 187 (451)
T ss_pred HHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcccCCC
Confidence 6665 45899999999999543 3344455553 5899999 9999887643
|
|
| >cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=182.83 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=79.0
Q ss_pred ceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC------CHH
Q 002941 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------NEV 295 (863)
Q Consensus 222 d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~------~~~ 295 (863)
|++|||||||+++|+..+.+++|+|+.+++|+|+|++.++|++||++.+++.++.+|+.+.|+|.|+.... +.+
T Consensus 40 d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~~ 119 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVE 119 (134)
T ss_pred CEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987432 244
Q ss_pred HHHHhhcCCCCeee-cC
Q 002941 296 PLMSYLRNRVPVLV-LP 311 (863)
Q Consensus 296 ~~~~~~~~~~pvl~-~p 311 (863)
.+.+. .++|++| +|
T Consensus 120 ~i~~~--~gip~LG~IP 134 (134)
T cd03109 120 TIERL--TGIPVLGIVP 134 (134)
T ss_pred HHHHh--cCCCEEEeCC
Confidence 45555 5899999 76
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-19 Score=194.90 Aligned_cols=329 Identities=13% Similarity=0.060 Sum_probs=208.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
.||.|++ +.+||+.+||+|.+|++++++++.+.. ......+...++.+.|+++++. +..++++||++++.
T Consensus 2 ~~~~~~~---~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~iv~~sg~~a~~ 75 (349)
T cd06454 2 KVLNFCS---NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAALVFSSGYAAND 75 (349)
T ss_pred Cceeccc---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCEEEeccHHHHHH
Confidence 6888887 899999889999999999999865421 1123577888999999999874 45788889999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++.+.. .| ..|++. ..+|+....++...+..
T Consensus 76 ~~~~~~~~---------~g------------d~Vl~~-~~~~~~~~~~~~~~g~~------------------------- 108 (349)
T cd06454 76 GVLSTLAG---------KG------------DLIISD-SLNHASIIDGIRLSGAK------------------------- 108 (349)
T ss_pred HHHHHhcC---------CC------------CEEEEe-hhhhHHHHHHHHHcCCc-------------------------
Confidence 88865520 12 345554 44566543322211100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
...+|. .| .+.+++.+.+. .++.+.++|+++++ ++..|.
T Consensus 109 -----~~~~~~------------------------~~--------~~~le~~i~~~---~~~~~~~~v~~~~~-~~~tG~ 147 (349)
T cd06454 109 -----KRIFKH------------------------ND--------MEDLEKLLREA---RRPYGKKLIVTEGV-YSMDGD 147 (349)
T ss_pred -----eEEecC------------------------CC--------HHHHHHHHHHh---hccCCCeEEEEecc-ccCCCC
Confidence 000110 01 12344444421 11356788999997 888897
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcC---CCCcEE--EeccccCCCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG---CVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g---v~PDiv--t~sKgLggG~~Pigav~~~~~i~~ 709 (863)
..+ +++|.++|++||+++|+||++ ++|..+..+ ....+. ..+|++ +++|.++. +.|++++++++++
T Consensus 148 ~~~----~~~i~~~~~~~~~~livD~a~-~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~ 219 (349)
T cd06454 148 IAP----LPELVDLAKKYGAILFVDEAH-SVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELID 219 (349)
T ss_pred ccC----HHHHHHHHHHcCCEEEEEccc-cccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHH
Confidence 765 899999999999999999999 455443211 111222 245765 67898874 3467888999888
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
.+..... .+..+.+.++..++++.++|+.+++ .++..+....+.+.+.+.+.+. ..+.+ ...+.++..
T Consensus 220 ~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~--g~~~~---~~~~~~~~~ 287 (349)
T cd06454 220 YLRSYAR----GFIFSTSLPPAVAAAALAALEVLQG---GPERRERLQENVRYLRRGLKEL--GFPVG---GSPSHIIPP 287 (349)
T ss_pred HHHHhch----hhhccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhc--CCccc---CCCCCcEEE
Confidence 7764211 1233446788899999999998765 1223333344444443333221 12211 122333222
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
....+. ....++.+.|.++||.+.+. ++.+|+.++...+++++++++++|+++
T Consensus 288 ~~~~~~-------~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 288 LIGDDP-------AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EeCCCh-------HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 222111 13567899999999999752 368999988889999999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=222.39 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=135.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|++|||+||+|++|||+||+||+++|+ ++|++|+|||||++++. +. ...... +
T Consensus 2 ~k~l~I~~T~t~~GKT~vslgL~~~L~-----~~G~~Vg~fKPi~~~p~--~~-~~~~~~---~---------------- 54 (684)
T PRK05632 2 SRSIYLAPTGTGVGLTSVSLGLMRALE-----RKGVKVGFFKPIAQPPL--TM-SEVEAL---L---------------- 54 (684)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEeCCcccCCC--CH-HHHHHH---H----------------
Confidence 467999999999999999999999999 99999999999998621 00 000000 0
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
... .....+++
T Consensus 55 --------------------------------------------------------------------~~~-~~~~~~~~ 65 (684)
T PRK05632 55 --------------------------------------------------------------------ASG-QLDELLEE 65 (684)
T ss_pred --------------------------------------------------------------------hcc-CChHHHHH
Confidence 000 12245678
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCc----HHHHHHHHH
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG----ISGTISAYE 272 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~----i~~~~~~~~ 272 (863)
+++.|+++.+++ |++||||++|.........+|+|||+.|++|||||++.+.++ ++++..+.+
T Consensus 66 I~~~~~~l~~~~-------------D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~i~~~~~ 132 (684)
T PRK05632 66 IVARYHALAKDC-------------DVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAERIELAAS 132 (684)
T ss_pred HHHHHHHhccCC-------------CEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHHHHHHHH
Confidence 888888776665 999999998777655567789999999999999999999887 467778888
Q ss_pred HHH-hCCCcEEEEEEcC--CCCCCHHHHHHhh-------------------cCCCCeee-cCCCCCCCchhhhh
Q 002941 273 SLK-LRGYDVVAVVFED--HGLVNEVPLMSYL-------------------RNRVPVLV-LPPLPQDSSNDLME 323 (863)
Q Consensus 273 ~~~-~~~~~v~gvi~n~--~~~~~~~~~~~~~-------------------~~~~pvl~-~p~~~~~~~~~~~~ 323 (863)
.+. .++.+++|||+|+ +..+....+.+.+ ..++|++| ||+.+.+.++++.+
T Consensus 133 ~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t~~~ 206 (684)
T PRK05632 133 SFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPRVID 206 (684)
T ss_pred HhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCCHHH
Confidence 887 7889999999999 4433333333332 24799999 99999998774443
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=192.58 Aligned_cols=337 Identities=14% Similarity=0.041 Sum_probs=204.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHHHhcc-cccC-----CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 406 ASWWTQGPDATLQIELARDMGYTAARFG-HVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 406 sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~-----~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
++++....|| ++|++++++..|+ +.. +... ..+..+...+++++|+++++.+ .+.+.|+++|+++++.+++
T Consensus 23 ~~l~~g~~~~-~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 23 SFLGSGTYKH-NPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGL 99 (398)
T ss_pred ccccccccCC-cCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHH
Confidence 5566777899 8999999988887 321 1111 1223356778999999988743 3478888888888899988
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.++. . .++ .+.|.+...|||++..++...+... + . .+
T Consensus 100 ~~~~-~-------~~~-----------gd~Vl~~~~~h~~~~~~~~~~~~~~--g-----------~-----------~~ 136 (398)
T cd00613 100 AAIR-A-------YHK-----------RNKVLVPDSAHPTNPAVARTRGEPL--G-----------I-----------EV 136 (398)
T ss_pred HHHh-c-------ccC-----------CCEEEEcCccCcchHHHHHHhcccC--C-----------c-----------EE
Confidence 8831 1 111 3356667889999988777654210 0 0 01
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++++.. ..| .+.+++.+. +++++|++++. . ..|.+
T Consensus 137 ~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~t~~viv~~~-~-~~G~~--- 174 (398)
T cd00613 137 VEVPSDEGG---------------------TVD--------LEALKEEVS--------EEVAALMVQYP-N-TLGVF--- 174 (398)
T ss_pred EEeccCCCC---------------------CcC--------HHHHHHhcC--------CCeEEEEEECC-C-CCcee---
Confidence 112211000 001 234444442 35789999985 5 56776
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--ecccc---CCCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLL---TGGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgL---ggG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+++++|+++|++||++||+|++|+.....+.. ..+ .+|+++ ++|.+ |+|....|++++++++++.+...
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~---~~~--~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~ 249 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP---GEY--GADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGR 249 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCCh---HHc--CCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCC
Confidence 367899999999999999999998532111111 112 479886 35654 44434556666777887765221
Q ss_pred C----------ccce-------------eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 715 S----------KLKA-------------LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 715 ~----------~~~~-------------~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
. .... ....++++++++.++++.++++.+.+++ .+++.++.+.+.+++.+.+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g-~~~~~~~~~~~~~~l~~~L~~-- 326 (398)
T cd00613 250 LVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEG-LKEIAERAHLNANYLAKRLKE-- 326 (398)
T ss_pred eeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHh--
Confidence 0 0000 1124567888999999998888775433 344455555555555444333
Q ss_pred hcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----cCCEEEEecCCCCcHHHHHHHHHHH
Q 002941 772 SSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 772 ~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+...... .....+.+.+... ....+.++++.|+++||++.. .++.+|++|++.+|+||||+++++|
T Consensus 327 --~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 327 --VGGVLPFNGPFFHEFVLRLPPL------YGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred --cCCcccCCCCeeEEEEEEcCCc------chHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 22111000 1111223333211 012356789999999998865 3589999999999999999998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-19 Score=202.75 Aligned_cols=218 Identities=17% Similarity=0.118 Sum_probs=151.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
|+++||.||.+++|||++++||||.|. ++|++|++|||-... -..++.. .-++|.+.|.
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~~-----~~G~~V~PFK~QNMs-----LNs~it~-----------~G~EIgraQ~ 59 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRILA-----RRGYRVAPFKSQNMS-----LNSAITP-----------GGGEIGRAQA 59 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHHH-----hcCCccCCCchhhcc-----cccEECC-----------CCcEEehhhh
Confidence 457999999999999999999999999 999999999983211 0000000 0123444444
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHh-hhcCCCCChh
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RESGGVVGDS 195 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~-~~~~~~~~~~ 195 (863)
++.-.+.. .+...|+|..|+|+ ....+|.+. ...++.-..+.+ +.......+.
T Consensus 60 ~QA~Aa~i-----~p~v~mNPvLLKP~-------sd~~sQVIv--------------~G~~~G~~s~~~yy~~~~~~l~~ 113 (486)
T COG1492 60 LQALAAGI-----EPSVHMNPVLLKPC-------SDTGSQVIV--------------MGKDIGRKSAVEYYQEGKGLLWV 113 (486)
T ss_pred HHHHHcCC-----CCccccCCEEEeec-------CCCceEEEE--------------ecccccccChHHHHHHHHHHHHH
Confidence 43333222 57789999999999 233333332 222322222222 2113446777
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCccccc-C-CCCCcHhHHhhhcCCCEEEEECCCCCcHHHHH-HHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP-G-PSGSLQCDLYRPFRLPGILVGDGRLGGISGTI-SAYE 272 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p-~-~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~-~~~~ 272 (863)
.+.+.+.++.+++ |+|++||||+.+.. + ..+..|+.+|+..++|||||++...|++.+.+ -+++
T Consensus 114 ~v~~s~~~l~~~~-------------d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRGGvfAsl~GT~~ 180 (486)
T COG1492 114 AVKESLERLDREY-------------DVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRGGVFASLYGTLA 180 (486)
T ss_pred HHHHHHHHhhhcc-------------cEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEeecccceeeeeeehhe
Confidence 8888888887776 99999999965544 3 26788999999999999999998886655544 5888
Q ss_pred HHHh-CCCcEEEEEEcCCC------CCCHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKL-RGYDVVAVVFEDHG------LVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~-~~~~v~gvi~n~~~------~~~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.|.. ..-.|+|+|+|++- .+..+.|++. +++|||| +||.+..
T Consensus 181 lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~--tg~~vlGv~P~~~~~ 230 (486)
T COG1492 181 LLPESDRALVKGFIINKFRGDESLLDPGLKWLEEL--TGVPVLGVLPYLKDA 230 (486)
T ss_pred ecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHh--hCCeeEeeccccccc
Confidence 7753 33579999999882 2345667776 8999999 9998886
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=182.74 Aligned_cols=303 Identities=12% Similarity=0.066 Sum_probs=191.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 411 ~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
++||..+||+|.+|+.+++++++ +.++.+.+|+++|+++.+.+ .+.+++++||++||..++.....
T Consensus 28 ~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al~~------- 93 (346)
T TIGR03576 28 DLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILALEP------- 93 (346)
T ss_pred ccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHhCC-------
Confidence 45666689999999999999984 35688999999999999843 37899999999999998875521
Q ss_pred ccccccCCCccccccccEEEE--ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchh
Q 002941 491 VLVDFLGKDTTEKCIELKVLA--LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~--~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~ 568 (863)
.| ..|+. .+.-+|.+...++.+.+...+ .+
T Consensus 94 --~g------------d~Vli~~~d~p~~~s~~~~~~l~ga~~~------------------------------~~---- 125 (346)
T TIGR03576 94 --PG------------RKVVHYLPEKPAHPSIPRSCKLAGAEYF------------------------------ES---- 125 (346)
T ss_pred --CC------------CEEEECCCCCCCchhHHHHHHHcCCEEe------------------------------cc----
Confidence 12 45654 234566664444333221000 00
Q ss_pred hhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHH
Q 002941 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (863)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lre 648 (863)
++ +++ ++. . .+..+|++++ .++.|.+. +..-+++|.+
T Consensus 126 ----------------------~~-----------l~~-l~~-----~-~~~~lIiitg--~s~~G~v~-~~~~L~~i~~ 162 (346)
T TIGR03576 126 ----------------------DE-----------LSE-LKK-----I-DGTSLVVITG--STMDLKVV-SEEDLKRVIK 162 (346)
T ss_pred ----------------------CC-----------HHH-Hhh-----C-cCceEEEEEC--CCCCCccc-CHHHHHHHHH
Confidence 01 111 211 0 1234567777 46777665 4677999999
Q ss_pred HHHHcCCeEEEecccccccccCCc--chhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeeccc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGH 724 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~ 724 (863)
+|++||++||+||+|. .|..|.. +....++ +|++ +|||+|+| +.+|++++++++++.+.... ..+
T Consensus 163 la~~~~~~livDEAy~-~~~~~~~~~~~~~~~~--~divv~s~SKalaG--~r~G~v~~~~~li~~l~~~~------~~~ 231 (346)
T TIGR03576 163 QAKSKEAIVLVDDASG-ARVRRLYGQPPALDLG--ADLVVTSTDKLMDG--PRGGLLAGRKELVDKIKSVG------EQF 231 (346)
T ss_pred HHHHcCCEEEEECCcc-ccccccCCCCCHHHcC--CcEEEeccchhccc--cceEEEEeCHHHHHHHHHhh------cCc
Confidence 9999999999999994 4443321 1222334 5765 78998866 46889999999999987532 223
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHH
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
.|+.+|.++++++++|+.+..+...+.++++.+.+.+.+ ..... . ....| |+.+.+.... .
T Consensus 232 ~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l--------~~~~~-~-~~~~~-f~~~~~~~~~--------~ 292 (346)
T TIGR03576 232 GLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLF--------DKLNV-E-RTPTG-FVIKGVEEEK--------L 292 (346)
T ss_pred ccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH--------HhCCC-C-cCCCe-EEEEeCCCCC--------H
Confidence 444688899999999986543333444444443333322 12211 1 12333 5555553211 1
Q ss_pred HHHHHHHHHHCCcEEEec------CCEEEEecCCCCcHH---HHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPE---VCSQLLLKLYQRL 850 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~------g~~lr~~ppl~~t~e---eid~~v~~L~~~l 850 (863)
...+...|.++||+++|. ++.+||+ +...++ +.+.++++|++.+
T Consensus 293 ~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 293 IEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred HHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHHHHhcc
Confidence 234456677899999983 3678885 233443 6999999987764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-15 Score=171.46 Aligned_cols=324 Identities=16% Similarity=0.121 Sum_probs=201.5
Q ss_pred EEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhc----CCC-CCCeEEEeCChhhHHH
Q 002941 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV----GKG-WASRAYFSDNGSTAIE 475 (863)
Q Consensus 401 ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~----p~~-~~~~v~f~~SGSeAvE 475 (863)
++|+..+ .+.++ ..|.+.+|+.+++...... ...|+..-..+|.+.+++++ +.+ ..+.+++++++++++.
T Consensus 28 ~i~l~~~--~~~~~--~~~~~~~al~~~l~~~~~~-~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~ 102 (368)
T PRK03317 28 PVRLNTN--ENPYP--PSPALVADIAEAVAEAAAG-LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQ 102 (368)
T ss_pred eeEecCC--CCCCC--CCHHHHHHHHHHHhhhhhh-hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHH
Confidence 4665543 33455 5799999999887542111 01222222334445555544 311 1357999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| ..|+...-+|++....+... +
T Consensus 103 ~~~~~~~~---------~g------------d~v~v~~P~y~~~~~~~~~~-g--------------------------- 133 (368)
T PRK03317 103 QLLQAFGG---------PG------------RTALGFVPSYSMHPIIARGT-H--------------------------- 133 (368)
T ss_pred HHHHHhcC---------CC------------CEEEEeCCChHHHHHHHHhc-C---------------------------
Confidence 88876521 12 46888888888754322111 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
...+++|... .+ .-| .+.+++.+.+ + ..-+.+++.| +++.|.
T Consensus 134 ---~~~~~~~~~~-----------------~~--~~d--------~~~l~~~~~~-----~-~~~~i~l~~p--~NPtG~ 175 (368)
T PRK03317 134 ---TEWVEGPRAA-----------------DF--TLD--------VDAAVAAIAE-----H-RPDVVFLTSP--NNPTGT 175 (368)
T ss_pred ---CeeEEcccCC-----------------CC--CCC--------HHHHHHHHhc-----c-CCCEEEEeCC--CCCCCC
Confidence 0011111000 00 011 1345555532 1 1223456666 789998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhh
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
..+ .++++++|+.++++||+||++++|++.|.....+..+..|+++ +|||++| .| +++|++++++++++.+
T Consensus 176 ~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l 250 (368)
T PRK03317 176 ALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDAL 250 (368)
T ss_pred CCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHH
Confidence 876 6777888888899999999999998777655666666678877 8899997 68 8999999999999988
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE-E
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI-E 790 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i-e 790 (863)
... ..+|..++++++++.++|+.. +.+.+.+.+ .+..++.+ .+.+.+++ +.-....|.++.+ .
T Consensus 251 ~~~--------~~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~-~~~~~~~l----~~~L~~~g-~~~~~~~~~~~~~~~ 314 (368)
T PRK03317 251 RLV--------RLPYHLSAVTQAAARAALRHA--DELLASVAA-LRAERDRV----VAWLRELG-LRVAPSDANFVLFGR 314 (368)
T ss_pred Hhc--------CCCCCCCHHHHHHHHHHhhCH--HHHHHHHHH-HHHHHHHH----HHHHHHCC-CEeCCCCCcEEEEec
Confidence 742 136778899999999988743 223333322 22223322 33444443 2223445555443 2
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+ . ....+.+.|+++||++.+.+ +.+|+. ..+++++++++++|+++++
T Consensus 315 ~--~---------~~~~~~~~l~~~Gv~v~~~~~~~~iRi~---~~~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 315 F--A---------DRHAVWQGLLDRGVLIRDVGIPGWLRVT---IGTPEENDAFLAALAEVLA 363 (368)
T ss_pred c--C---------CHHHHHHHHHHCCEEEEeCCCCCeEEEe---cCCHHHHHHHHHHHHHHHH
Confidence 2 1 14678889999999999865 688887 3478899999999988764
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=172.15 Aligned_cols=337 Identities=12% Similarity=0.110 Sum_probs=211.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
+++++..+ .+.++ .+|.+.+|+.+++...... .+.. .-..+|.+.+++.++.. .+.++++++|++|+..++
T Consensus 29 ~~i~l~~~--~~~~~--~~~~~~~a~~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~ 100 (380)
T PRK06225 29 EMIWMGQN--TNHLG--PHEEVREAMIRCIEEGEYC---KYPPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVM 100 (380)
T ss_pred CeEEccCC--CCCCC--CCHHHHHHHHHHHhcCCCC---CCCCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHH
Confidence 56666643 34565 4799999999988753221 1222 23567888888887643 368999999999999998
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+.... .| ..||..+.+|+.... .+...|.
T Consensus 101 ~~~~~---------~g------------d~vl~~~p~y~~~~~-~~~~~g~----------------------------- 129 (380)
T PRK06225 101 RAFLS---------PG------------DNAVTPDPGYLIIDN-FASRFGA----------------------------- 129 (380)
T ss_pred HHhcC---------CC------------CEEEEcCCCCcchHH-HHHHhCc-----------------------------
Confidence 86521 12 458888888764321 1111110
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+++|... . .+-+ .-| .+.+++.+. ++.-+.+++.| ++..|...
T Consensus 130 -~~~~v~~~~-------------~-~~~~--~~d--------~~~l~~~~~-------~~~~~v~l~~p--~NptG~~~- 174 (380)
T PRK06225 130 -EVIEVPIYS-------------E-ECNY--KLT--------PELVKENMD-------ENTRLIYLIDP--LNPLGSSY- 174 (380)
T ss_pred -eEEeecccc-------------c-cCCc--cCC--------HHHHHhhcC-------CCceEEEEeCC--CCCCCcCC-
Confidence 001111000 0 0000 001 123444332 22234556778 67788655
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK 716 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~ 716 (863)
+.+.+++|.++|++||+++|+||++..|. .+........ ....++.+|||.+| .| +++|++++++++++.+...
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~-- 250 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYRDFA-REHTLAAEYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSI-- 250 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHHHHh-ccCCchhhcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHH--
Confidence 67889999999999999999999998773 2322111110 11223558899997 67 8999999999999887641
Q ss_pred cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC--eeEecccceEEEEEEccC
Q 002941 717 LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT--VQRVVALGTLCAIELQAA 794 (863)
Q Consensus 717 ~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~--v~~vrg~Gl~~~iel~~~ 794 (863)
...+++.+.++++++.++|+. ..++.+++.+..++..+.+. +.+++.+. +......|.++.+++...
T Consensus 251 -----~~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~g~~~~~~~~~~ 319 (380)
T PRK06225 251 -----VINDLGTNVIAQEAAIAGLKV--KDEWIDRIRRTTFKNQKLIK----EAVDEIEGVFLPVYPSHGNMMVIDISEA 319 (380)
T ss_pred -----HhcccCCCHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHH----HHHHhCcCCccccCCCCCeEEEEEcccc
Confidence 234677788998888888864 23455565555555444443 33444332 222345677888887542
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
. ....++...|.++||.++|. + +.+|+. +..++|++++++++|.+++++++
T Consensus 320 ~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 320 G-------IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred c-------CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHHHHHHHHHHHHHHhh
Confidence 1 01456888889999999873 1 467775 45689999999999999988765
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=165.40 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=143.4
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCC-CCcEE--EeccccC-
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGC-VPDIA--CYGKLLT- 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv-~PDiv--t~sKgLg- 692 (863)
.++.+|++++. ++..|.+. |.+.+++|.++|+++|+++|+||++++++..+.... ....+. ..|++ +++|.++
T Consensus 131 ~~~~~v~i~~~-~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~ 208 (350)
T cd00609 131 PKTKLLYLNNP-NNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGL 208 (350)
T ss_pred ccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCC
Confidence 56889999996 89899754 788899999999999999999999998876665431 111111 22443 6899998
Q ss_pred CCCCCceeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 gG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+| .++|++++++ ++.+.+... ....++..++.+++++.++|+..+ +..+++.+......+.+.+ .+
T Consensus 209 ~g-~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~----~L 275 (350)
T cd00609 209 PG-LRIGYLIAPPEELLERLKKL------LPYTTSGPSTLSQAAAAAALDDGE--EHLEELRERYRRRRDALLE----AL 275 (350)
T ss_pred cc-cceEEEecCHHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHH----HH
Confidence 77 7999999999 888888652 233467778888888888888653 3334444444444444433 33
Q ss_pred hcCCCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHH
Q 002941 772 SSHRTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 772 ~~~p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.+... .....|.++.+.+.... ....+.+.|.++||++.+. ++.+|+.+... ++|+++++
T Consensus 276 ~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~ 345 (350)
T cd00609 276 KELGPLVVVKPSGGFFLWLDLPEGD--------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEAL 345 (350)
T ss_pred HhcCCccccCCCccEEEEEecCCCC--------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHH
Confidence 3443322 34566778778775431 2445666777889999864 36899987666 99999999
Q ss_pred HHHH
Q 002941 844 LKLY 847 (863)
Q Consensus 844 ~~L~ 847 (863)
++|+
T Consensus 346 ~al~ 349 (350)
T cd00609 346 ERLA 349 (350)
T ss_pred HHhh
Confidence 9885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=162.55 Aligned_cols=319 Identities=10% Similarity=0.067 Sum_probs=197.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++. +.+|. +|.+.+|+.++++.+.+.. ..-..+|.+.++++++.. .+.+++++++++++..+++
T Consensus 30 ~~i~l~~n~--~~~~~--~~~v~~a~~~~~~~~~~~p-----~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 30 KIVKLASNE--NPYGP--SPKVKEAIAAHLDELALYP-----DGYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred ceEEecCCC--CCCCC--CHHHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHH
Confidence 577877643 34664 7999999999887654322 223456667777766533 3689999999999887766
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|++...+|++....+... |. .+
T Consensus 100 ~~~~---------~g------------d~v~~~~p~y~~~~~~~~~~-g~----------------------------~~ 129 (359)
T PRK03158 100 ALLN---------PG------------TNTVMAEPTFSQYRHNAIIE-GA----------------------------EV 129 (359)
T ss_pred HHhC---------CC------------CEEEEcCCCHHHHHHHHHHc-CC----------------------------eE
Confidence 4421 12 56898999998753222111 00 00
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++..+ + ..| .+.+++.+. ++.-..+|+.| ++..|.+.+.
T Consensus 130 ~~~~~~~-~---------------------~~d--------~~~l~~~~~-------~~~~~v~i~~p--~NPtG~~~~~ 170 (359)
T PRK03158 130 REVPLKD-G---------------------GHD--------LEAMLKAID-------EQTKIVWICNP--NNPTGTYVNH 170 (359)
T ss_pred EEEecCC-C---------------------CcC--------HHHHHHhcC-------CCCCEEEEeCC--CCCCCCCCCH
Confidence 1111100 0 011 123333332 12223344556 8999987763
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCc-EE--EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PD-iv--t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
+-+.++.+.|+ +|+++|+||++..|-..+. .......+-.+. ++ +|||.++ .| +++|++++++++++.+...
T Consensus 171 -~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 171 -EELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIA 247 (359)
T ss_pred -HHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHHHh
Confidence 33444444442 6999999999976632221 111111121223 33 7899998 68 8999999999999988642
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+++.++++++++.++|+ +.++.+++.+..+..++.+. +.+.+++ +..+++.|.++.+.+..+
T Consensus 248 --------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~----~~l~~~~-~~~~~~~g~~i~~~~~~~ 311 (359)
T PRK03158 248 --------RPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYY----AFCKEYG-LFYYPSQTNFIFVDTGRD 311 (359)
T ss_pred --------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH----HHHHHCC-CeeCCCcCcEEEEECCCC
Confidence 2346789999999988885 45556565555555554443 3344443 333566788887776321
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
..++++.|.++||++.|+ .+.+|+. ..+++++++++++|++.
T Consensus 312 ----------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 358 (359)
T PRK03158 312 ----------ANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKEL 358 (359)
T ss_pred ----------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHh
Confidence 457888899999999984 3678886 45899999999999874
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=160.73 Aligned_cols=325 Identities=14% Similarity=0.063 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHHhcccccC-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.||.+++|+.+++........ .....+...++.++|+++++.+ ...++|+++|++|+..+++.++ .. .. ++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~~-~~---~~---~~ 103 (371)
T PRK13520 32 PHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAAR-NL---AK---AE 103 (371)
T ss_pred chHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHHH-hh---cc---CC
Confidence 689999999998875322211 1112334478999999988743 2357899999999999999883 22 00 00
Q ss_pred cCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
+.+||+.+.++..+.. +....|. .+..++.+..+
T Consensus 104 ----------~~~vl~~~~~h~s~~~-~~~~~g~----------------------------~~~~v~~~~~~------- 137 (371)
T PRK13520 104 ----------KPNIVVPESAHFSFDK-AADMLGV----------------------------ELRRAPLDDDY------- 137 (371)
T ss_pred ----------CceEEecCcchHHHHH-HHHHcCc----------------------------eEEEecCCCCC-------
Confidence 2568777765433211 1111000 01112211100
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+.+ +....+++.+ .+..|.+.+ +++|.++|++||+
T Consensus 138 --------------~~d--------~~~l~~~i~~-------~~~~vi~~~~--~~~tG~~~~----l~~I~~l~~~~g~ 182 (371)
T PRK13520 138 --------------RVD--------VKAVEDLIDD-------NTIGIVGIAG--TTELGQVDP----IPELSKIALENGI 182 (371)
T ss_pred --------------cCC--------HHHHHHHHhh-------CCEEEEEEcC--CcCCcccCC----HHHHHHHHHHcCC
Confidence 011 2456666642 2333444555 356787776 9999999999999
Q ss_pred eEEEeccccccc----ccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeec-cHHHHHhhhcCCccc----eeeccc
Q 002941 656 PVIFDEVFTGFW----RLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFVGDSKLK----ALLHGH 724 (863)
Q Consensus 656 lLI~DEV~TGfG----RtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~-~~~i~~~l~~~~~~~----~~~~~~ 724 (863)
++++||+|+++. +.+..+..... ..|.+++ -|.+.+| .|+|+++. ++++++.+....... .+.+.+
T Consensus 183 ~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 259 (371)
T PRK13520 183 FLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQATLTG 259 (371)
T ss_pred CEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcceEe
Confidence 999999997653 11111222222 3476665 3654445 78988875 556777664211100 001112
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHH
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
|. ++..++++.++|+.+.++++ ++..+...++.+.+.+.+.+. .... .+.....++.+.+. .
T Consensus 260 t~--~~~~~~~~~~al~~l~~~g~-~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~~~~v~~~~~--~--------- 321 (371)
T PRK13520 260 TR--SGAGVAATYAVMKYLGREGY-RKVVERCMENTRWLAEELKER--GFEP--VIEPVLNIVAFDDP--N--------- 321 (371)
T ss_pred ec--cChHHHHHHHHHhhhcHhHH-HHHHHHHHHHHHHHHHHHHhC--CCEE--ecCCCceEEEEecC--C---------
Confidence 22 33558888889988765543 344444555555544443321 1211 12223446666553 1
Q ss_pred HHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..++.+.|.++||++++.+ ..+|++++..+|++|++.+++.|+++++
T Consensus 322 ~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 322 PDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 4578889999999998753 6799987778899999999999988764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-14 Score=159.90 Aligned_cols=326 Identities=13% Similarity=0.138 Sum_probs=204.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++++..+ ...+| .+|++.+|+.+.+..... |..+...+|.++|+++.+-. .+.++++++.++++..+++
T Consensus 33 ~~~~l~~~--~~~~~--~~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~~ia~~~~~~-~~~I~it~G~~~~l~~~~~ 102 (369)
T PRK08153 33 FRARIGAN--ESGFG--PSPSVIAAMREAAAEIWK-----YGDPENHDLRHALAAHHGVA-PENIMVGEGIDGLLGLIVR 102 (369)
T ss_pred ceeEecCC--CCCCC--CCHHHHHHHHHHHHHhhc-----CCCCccHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHH
Confidence 45666653 23455 579999999887654322 12222457788888877532 3579999999888888777
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| ..|+....+|.+....+...+.
T Consensus 103 ~~~~---------~g------------d~vlv~~p~y~~~~~~~~~~g~------------------------------- 130 (369)
T PRK08153 103 LYVE---------PG------------DPVVTSLGAYPTFNYHVAGFGG------------------------------- 130 (369)
T ss_pred HhcC---------CC------------CEEEECCCcchHHHHHHHHcCC-------------------------------
Confidence 5421 12 4677777777664322111100
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|. + ++..+ .+.+++.+.. ...-+.+++.| ++..|.+. +
T Consensus 131 ~~~~vp~--------------~---------~~~~~-----~~~l~~~~~~------~~~~~i~l~~P--~NPtG~~~-~ 173 (369)
T PRK08153 131 RLVTVPY--------------R---------DDRED-----LDALLDAARR------ENAPLVYLANP--DNPMGSWH-P 173 (369)
T ss_pred eEEEeeC--------------C---------CCCCC-----HHHHHHHhcc------cCCcEEEEeCC--CCCCCCCC-C
Confidence 0111220 0 00001 1223222211 12223455688 67778665 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+.+.++.++|+ +|++||+||++..|+..|...... ...|+++ +|||.++ .| +++|++++++++++.+...
T Consensus 174 ~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~- 248 (369)
T PRK08153 174 AADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAG-ARVGYAIGAPGTIKAFDKV- 248 (369)
T ss_pred HHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcc-hheeeeecCHHHHHHHHHh-
Confidence 666777777776 499999999998886555322211 1235544 7899998 78 8999999999999988641
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+++.++++++++.++|+ ++++.+++++..+..++.+.+. +++.+. ......|.++.+.+..+.
T Consensus 249 -------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~----L~~~g~-~~~p~~~~f~~~~~~~~~ 313 (369)
T PRK08153 249 -------RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAI----ARANGL-TPLPSATNFVAIDCGRDG 313 (369)
T ss_pred -------hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH----HHHCCC-ccCCCcCcEEEEECCCCc
Confidence 1346788999999998885 5566777777777777655443 333432 223455677777664211
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEE-ec----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMR-PL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~-p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
..+..+.+.|.++||+++ |. .+.+|++ ..++++++.++++|++++..++
T Consensus 314 -------~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis---~~~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 314 -------AFARAVLDGLIARDIFVRMPGVAPLDRCIRVS---CGPDEELDLFAEALPEALEAAR 367 (369)
T ss_pred -------ccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHHHHHhh
Confidence 136788999999999996 42 2578886 3479999999999998886544
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-14 Score=157.79 Aligned_cols=338 Identities=14% Similarity=0.047 Sum_probs=192.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+.+|+.++.+. . .+|.+.+|+.+. +.... ..+.++...+|.++|+++++. +.+++++||++++..++.
T Consensus 6 ~~~~~~~~~~~----~-~~~~~~~a~~~~--~~~~~--~~~~~~~~~~l~~~la~~~~~---~~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVT----K-PTDAMRAAMANA--EVDDD--VLGYDPTALRLEEEMAKIFGK---EAALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhccccc----C-CCHHHHHHHHhc--cCCCc--ccCCCHHHHHHHHHHHHHhCC---ceeEEecCccHHHHHHHH
Confidence 56788887666 2 368999998764 12221 123466688999999999983 568899999999987777
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc-c-cceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL-G-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~-g-als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
.... .. | ..|++.+.+|.+... + .....|
T Consensus 74 ~~~~----~~----g------------d~Vl~~~~~~~~~~~~~~~~~~~g----------------------------- 104 (353)
T PLN02721 74 VHCD----VR----G------------SEVILGDNSHIHLYENGGISTLGG----------------------------- 104 (353)
T ss_pred HHcc----CC----C------------CeEEEcCccceehhcccchhhhcC-----------------------------
Confidence 6410 01 1 468877776522111 1 000000
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
.....+|... .+ ..| .+.+++.+++.. ..+..+..+|+++++ ++..|..+
T Consensus 105 -~~~~~v~~~~-----------------~~--~~d--------~~~l~~~i~~~~-~~~~~~~~~v~l~~~-~~np~G~~ 154 (353)
T PLN02721 105 -VHPRTVKNNE-----------------DG--TMD--------LDAIEAAIRPKG-DDHFPTTRLICLENT-HANCGGRC 154 (353)
T ss_pred -ceeEecCCCc-----------------CC--CcC--------HHHHHHHHHhcc-CCCCCcceEEEEecc-ccccCCcc
Confidence 0001111000 00 011 244555554210 111246778999987 66544466
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc--EEEeccccCCCCCCcee-eeccHHHHHhhhc
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFDSFVG 713 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--ivt~sKgLggG~~Piga-v~~~~~i~~~l~~ 713 (863)
++.+.+++|.++|++||+++|+||++. ++-..... .........| +++++|++++ |+|+ +++++++++.+..
T Consensus 155 ~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~ 230 (353)
T PLN02721 155 LSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKAKR 230 (353)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhHHH
Confidence 688999999999999999999999984 43211000 0111111244 4578999973 5665 5678888876542
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-e-cccceEEEEEE
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-V-VALGTLCAIEL 791 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-v-rg~Gl~~~iel 791 (863)
-. ....+... ..+..+++++.+++.. .+++.+. ..+.+.+ .+.+.+.+.+.. + ...+.++.+.+
T Consensus 231 ~~---~~~~~~~~-~~~~~~~~~~~~l~~~-----~~~~~~~-~~~~~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~ 296 (353)
T PLN02721 231 LR---KTLGGGMR-QVGVLAAAALVALQEN-----VPKLEDD-HKKAKLL----AEGLNQIKGLRVNVAAVETNIVYFDI 296 (353)
T ss_pred HH---HhcCCCee-hhHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHH----HHHHHhCCCcEEecCCccceEEEEEc
Confidence 10 00111111 1122334444444322 1122211 1222222 333444443311 2 23455677777
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.... . .....+.+.|.++||++++.+ +.+|+++++.++++|+++++++|++++..
T Consensus 297 ~~~~---~---~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 297 TDGS---R---ITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred cCCc---c---ccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 5320 0 125678999999999999876 78999988889999999999999987753
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-14 Score=157.65 Aligned_cols=322 Identities=13% Similarity=0.169 Sum_probs=198.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +.+|- .|.+.+++.+.+..+.. +......+|.+.++++++.+ .+.+++++++++++..++.
T Consensus 33 ~~i~l~~~~--~~~~~--~~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 33 DIIKLASNE--NPLGP--SPKAIEAIRAAADELHR-----YPDGSGFELKAALAEKFGVD-PERIILGNGSDEILELLAR 102 (367)
T ss_pred ceEEecCCC--CCCCC--CHHHHHHHHHHHHhhcC-----CCCCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 789988743 35663 68899999988765432 22222357888888877643 3578888888877766555
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|+..+.+|.+....+... |.
T Consensus 103 ~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~-g~------------------------------ 130 (367)
T PRK02731 103 AYLG---------PG------------DEVIYSEHGFAVYPIAAQAV-GA------------------------------ 130 (367)
T ss_pred HhcC---------CC------------CEEEEecCCHHHHHHHHHHc-CC------------------------------
Confidence 4311 12 46888887775543222111 10
Q ss_pred eeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+.+|. .+ ..| .+.+++.+. ++.-..++..| ++..|.+.+
T Consensus 131 ~~~~~~~~~~---------------------~~~--------~~~l~~~~~-------~~~~~v~l~~p--~nptG~~~~ 172 (367)
T PRK02731 131 KPVEVPAKDY---------------------GHD--------LDAMLAAVT-------PRTRLVFIANP--NNPTGTYLP 172 (367)
T ss_pred eEEEecccCC---------------------CCC--------HHHHHHHhC-------CCCcEEEEeCC--CCCCCcCCC
Confidence 0011110 00 001 133444442 12223344455 788997765
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
.+-+.++.+.|+ +|+++|+||++..+...+. ..+...++..++++ +|||.+| .| +++|++++++++++.+..
T Consensus 173 -~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~ 249 (367)
T PRK02731 173 -AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNR 249 (367)
T ss_pred -HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHH
Confidence 333444444442 4999999999987754332 22334344445665 7899986 67 899999999999998864
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~ 793 (863)
. ..++..++++++++.+.|+ +.++.+++++..+..++.+.+ .+++++ +....+.|.++.+.+.+
T Consensus 250 ~--------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~----~L~~~g-~~~~~~~g~~~~i~~~~ 313 (367)
T PRK02731 250 V--------RQPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTE----FLAELG-LEYIPSVGNFILVDFDD 313 (367)
T ss_pred c--------cCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH----HHHHCC-CccCCCCceEEEEECCC
Confidence 2 1245567788887777764 455556666655555554443 333443 22234568888888743
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. .+.++++.|.++||++++.. +.+|+.. .+.++++.++++|+++++
T Consensus 314 ~~--------~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 314 GK--------DAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEEENRRFLAALKEFLA 365 (367)
T ss_pred CC--------CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHh
Confidence 21 25678889999999999852 5788873 478899999999988764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=154.74 Aligned_cols=339 Identities=13% Similarity=0.065 Sum_probs=200.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
..+++..|... ++ ..+.+.+++.+.+..... +....+..+....+++.+.+..+.. ..++++++++|++|+..+
T Consensus 25 ~~i~l~~g~~~--~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~ 100 (382)
T PRK06108 25 GVLPLWFGESD--LP--TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA 100 (382)
T ss_pred CeEEecCCCCC--CC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence 34565554332 33 368899999887765321 1112234456667777776654411 136899999999999988
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++...+ .| ..|+....+|.+....+... |
T Consensus 101 ~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~-g----------------------------- 129 (382)
T PRK06108 101 AQALVG---------PG------------DEVVAVTPLWPNLVAAPKIL-G----------------------------- 129 (382)
T ss_pred HHHhcC---------CC------------CEEEEeCCCccchHHHHHHC-C-----------------------------
Confidence 876521 12 46888877775432211111 0
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
...+.+|... + ...| .-| .+.+++.+. + ++.++++... ++..|.+
T Consensus 130 -~~~~~v~~~~------------~--~~~~--~~d--------~~~l~~~~~-------~-~~~~i~l~~p-~NPtG~~- 174 (382)
T PRK06108 130 -ARVVCVPLDF------------G--GGGW--TLD--------LDRLLAAIT-------P-RTRALFINSP-NNPTGWT- 174 (382)
T ss_pred -CEEEEeeCCC------------C--CCCc--cCC--------HHHHHHhcC-------c-cceEEEEECC-CCCCCcc-
Confidence 0011111100 0 0000 001 133444442 1 2334444433 7888866
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCc-ch-hhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVE-TT-ADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~-~a-~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
.+.+.+++|.++|++||+++|+||++.+|... +.. .. .......+.++ +|||.++ .| +++|++++++++++.
T Consensus 175 ~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~ 253 (382)
T PRK06108 175 ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQV 253 (382)
T ss_pred cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHH
Confidence 47889999999999999999999999887432 111 11 11111122233 7899886 57 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~i 789 (863)
+... ....+++.++++++++.++|+. .+++.+++++..+..++.+. +.+.+.+.+..+... |+++.+
T Consensus 254 ~~~~------~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~p~~g~~~~~ 321 (382)
T PRK06108 254 LEKL------IEYNTSCVAQFVQRAAVAALDE--GEDFVAELVARLRRSRDHLV----DALRALPGVEVAKPDGAMYAFF 321 (382)
T ss_pred HHHH------HHhcccCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHH----HHHHhCCCCcccCCCeeEEEEE
Confidence 7641 1223556788888888888863 23344555555555555443 334444444334444 445566
Q ss_pred EEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+.... ...+++..|+ ++||++.|+ .+.+|++... +++++++++++|.++++
T Consensus 322 ~l~~~~--------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 322 RIPGVT--------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred eCCCCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 665321 2456788775 579999763 2678987654 89999999999987764
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-14 Score=155.43 Aligned_cols=324 Identities=14% Similarity=0.030 Sum_probs=183.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhc
Q 002941 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (863)
Q Consensus 410 ~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~ 489 (863)
.+++| .+|.+.+|+.+.+.... ..+..+...+|.+.++++++. +.++++++|++|+..+++..+.
T Consensus 5 ~~~~~--~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~~a~~~g~---~~~~~~~~gt~a~~~~~~~l~~------ 69 (338)
T cd06502 5 DTVTG--PTPEMLEAMAAANVGDD----VYGEDPTTAKLEARAAELFGK---EAALFVPSGTAANQLALAAHTQ------ 69 (338)
T ss_pred ccCCC--CCHHHHHHHHhcccCCc----ccCCCHHHHHHHHHHHHHhCC---CeEEEecCchHHHHHHHHHhcC------
Confidence 45677 57999999987653221 112456788999999999872 5788999999999988876521
Q ss_pred cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 490 G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
.| ..|+. ...+|.....+..... .. |+....+|...
T Consensus 70 ---~g------------d~v~~-~~~~~~~~~~~~~~~~---~~------------------------g~~~~~v~~~~- 105 (338)
T cd06502 70 ---PG------------GSVIC-HETAHIYTDEAGAPEF---LS------------------------GVKLLPVPGEN- 105 (338)
T ss_pred ---CC------------CeEEE-ecCcceeeecCCcHHH---Hc------------------------CceEEeecCCC-
Confidence 11 34654 4455544321110000 00 00001111000
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel 649 (863)
+ ..| .+.+++.+.+.. ..+..+..+|+++.. .+.||+. +.+.+++|.++
T Consensus 106 -----------------~--~~d--------~~~l~~~i~~~~-~~~~~~~~~v~l~~p-~n~g~~~--~~~~l~~i~~~ 154 (338)
T cd06502 106 -----------------G--KLT--------PEDLEAAIRPRD-DIHFPPPSLVSLENT-TEGGTVY--PLDELKAISAL 154 (338)
T ss_pred -----------------C--cCC--------HHHHHHHhhccC-CCcCCcceEEEEEee-cCCcccc--CHHHHHHHHHH
Confidence 0 011 234555554210 011124566666654 5665543 78889999999
Q ss_pred HHHcCCeEEEeccccccc--ccCCcchhhhcCCCCcEE--EeccccCCCCCCcee-eeccHHHHHhhhcCCccceeeccc
Q 002941 650 CQNRKIPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFDSFVGDSKLKALLHGH 724 (863)
Q Consensus 650 c~~~gilLI~DEV~TGfG--RtG~~~a~e~~gv~PDiv--t~sKgLggG~~Piga-v~~~~~i~~~l~~~~~~~~~~~~~ 724 (863)
|++||+++|+||++.-+. -.|. ....+...+|++ +++|.++ +|.|+ +++++++++.+.... ..+++
T Consensus 155 ~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~ 225 (338)
T cd06502 155 AKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGG---APVGAVVVGNRDFIARARRRR----KQAGG 225 (338)
T ss_pred HHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCC---CccceEEECCHHHHHHHHHHH----HHhCC
Confidence 999999999999973211 1122 222223356766 5689876 23444 457889888876411 12345
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHH
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
+++.+++++++++++|+.-...+..+++.++.+++.+ . +.+.+. ......+.++.+.+.... ..
T Consensus 226 ~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~----~----L~~~~~-~~~~~~~~~~~v~~~~~~-------~~ 289 (338)
T cd06502 226 GMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAE----A----LEELGG-LESEVQTNIVLLDPVEAN-------AV 289 (338)
T ss_pred ChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----H----HHhcCC-CcccccCCeEEEecCCcc-------HH
Confidence 6667778888888877631111122333333333333 2 222332 111234445555543211 12
Q ss_pred HHHHHHHHH---HCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 805 AASLLKKLR---EDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 805 ~~~l~~~l~---e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.+. ++|+++++.+ +.+|++|++.++++|++++++++++
T Consensus 290 ~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 290 FVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 334444443 7899998865 8999999999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-14 Score=157.62 Aligned_cols=326 Identities=13% Similarity=0.093 Sum_probs=192.7
Q ss_pred cHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCCC-C-CeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~~-~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
.+.+.+++.++++.. ..+....+..+....+++.+.+..+... . +.++++++|++|++.+++...+ .|
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~g 105 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIIN---------PG 105 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC---------CC
Confidence 467888888877642 1111122334556677777765433210 1 3799999999999988876521 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
..|++.+.+|++....+...+. . .+++|...
T Consensus 106 ------------d~vl~~~p~y~~~~~~~~~~g~-~------------------------------~~~~~~~~------ 136 (378)
T PRK07682 106 ------------DEVLIVEPSFVSYAPLVTLAGG-V------------------------------PVPVATTL------ 136 (378)
T ss_pred ------------CEEEEeCCCchhhHHHHHHcCC-E------------------------------EEEeecCC------
Confidence 5799999999864322211110 0 01111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
+ ..+ .-| .+.+++.+. ....+.+++.| ++..|. +.+.+.+++|.++|++||
T Consensus 137 ------~---~~~--~~d--------~~~l~~~~~-------~~~~~v~~~~p--~NPtG~-~~s~~~~~~l~~~~~~~~ 187 (378)
T PRK07682 137 ------E---NEF--KVQ--------PAQIEAAIT-------AKTKAILLCSP--NNPTGA-VLNKSELEEIAVIVEKHD 187 (378)
T ss_pred ------c---cCC--CCC--------HHHHHhhcC-------cccEEEEEECC--CCCcCc-CcCHHHHHHHHHHHHHcC
Confidence 0 000 001 234444442 12233445666 788886 557889999999999999
Q ss_pred CeEEEecccccccccCCcchh-hhcCCCCcE---EEeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc
Q 002941 655 IPVIFDEVFTGFWRLGVETTA-DLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH 729 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~-e~~gv~PDi---vt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~ 729 (863)
+++|+||++..|...+....+ ...+..+.+ .+|||.++ .| +++|++++++++++.+... ....+++.+
T Consensus 188 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~------~~~~~~~~~ 260 (378)
T PRK07682 188 LIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKI------HQYSMMCAP 260 (378)
T ss_pred cEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHH------HHhhccCCC
Confidence 999999999988655532221 212222333 37899997 67 8999999999999988641 112345567
Q ss_pred HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHH
Q 002941 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASL 808 (863)
Q Consensus 730 pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l 808 (863)
+++.+++.++|+.- +.+.+++++..+..++.+.+ .+.++. +......| .++.+.+.... .....+
T Consensus 261 ~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~----~L~~~~-~~~~~p~g~~~~~~~~~~~~-------~~~~~~ 326 (378)
T PRK07682 261 TMAQFAALEALRAG--NDDVIRMRDSYRKRRNFFVT----SFNEIG-LTCHVPGGAFYAFPSISSTG-------LSSEEF 326 (378)
T ss_pred HHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHH----HHHHCC-CccCCCCeeEEEEEeccCCC-------CCHHHH
Confidence 88888888777521 22334444444444443333 333332 22233444 44445553211 014567
Q ss_pred HHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 809 LKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 809 ~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+..++ ++||.+.|+ .+.+|++. ..+++++++++++|.++++++
T Consensus 327 ~~~ll~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 327 AEQLLLEEKVAVVPGSVFGESGEGFIRCSY--ATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred HHHHHHhCCEEEcCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHhhc
Confidence 87776 789999873 26788863 457899999999998887653
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=154.58 Aligned_cols=316 Identities=13% Similarity=0.084 Sum_probs=189.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCCh-hhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SG-SeAvE~AL 478 (863)
+++|+.++. +.+| ..|.+.+++.+.+.++.. +..+...+|.+.++++++-. .+.++++.+| ++++..++
T Consensus 35 ~~i~l~~~~--~~~~--~~~~~~~~~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~~~~Ga~~~i~~~~ 104 (361)
T PRK00950 35 SIIKLGSNE--NPLG--PSPKAVEAIEKELSKIHR-----YPEPDAPELREALSKYTGVP-VENIIVGGDGMDEVIDTLM 104 (361)
T ss_pred ceEEccCCC--CCCC--CCHHHHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHhCCC-HHHEEEeCCCHHHHHHHHH
Confidence 678877532 4566 468999999887765422 22333477888888887643 3578884445 56677766
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+...+ .| ..|++...+|......+... |..
T Consensus 105 ~~~~~---------~g------------d~vlv~~p~y~~~~~~~~~~-g~~---------------------------- 134 (361)
T PRK00950 105 RTFID---------PG------------DEVIIPTPTFSYYEISAKAH-GAK---------------------------- 134 (361)
T ss_pred HHhcC---------CC------------CEEEEcCCChHHHHHHHHHc-CCE----------------------------
Confidence 64411 12 45777777665432211111 100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..++.+..+ ..| .+.+++.+. .+..+.++..| ++..|.+.+
T Consensus 135 ~~~~~~~~~~---------------------~~~--------~~~l~~~~~-------~~~~~v~~~~p--~nptG~~~~ 176 (361)
T PRK00950 135 PVYAKREEDF---------------------SLD--------VDSVLNAIT-------EKTKVIFLCTP--NNPTGNLIP 176 (361)
T ss_pred EEEeecCCCC---------------------CcC--------HHHHHHHhc-------cCCCEEEEeCC--CCCCCCCcC
Confidence 0001100000 001 133444442 12234455567 788898876
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK 716 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~ 716 (863)
.+++.++|+++|+++|+||++.+|. .+..... ..++-.--+-+|||.+| .| +++|++++++++++.+...
T Consensus 177 ----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~-- 248 (361)
T PRK00950 177 ----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAG-LRIGYGFVPEWLIDYYMRA-- 248 (361)
T ss_pred ----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCch-hhcchhcCCHHHHHHHHHh--
Confidence 5678899999999999999998774 2221111 11110111237899997 67 8999999999999887642
Q ss_pred cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc
Q 002941 717 LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 717 ~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~ 796 (863)
..+++.++++.+++.++|+ +.++.++..+..+..++.+.+. +. +......|.++.+.+...
T Consensus 249 ------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~----l~----~~~~~~~~~~i~~~~~~~-- 309 (361)
T PRK00950 249 ------KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNE----LP----FKVYPSEANFVLVDVTPM-- 309 (361)
T ss_pred ------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhh----cC----eeECCCcceEEEEECCCC--
Confidence 2334567777777777764 4555666665555555544222 22 111233566777777321
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
...++++.|.++||+++++ .+.+|++. .+++++++++++|++++
T Consensus 310 -------~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~---~~~~~~~~l~~~L~~il 360 (361)
T PRK00950 310 -------TAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSI---GTFEENERFLEILKEIV 360 (361)
T ss_pred -------CHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEEC---CCHHHHHHHHHHHHHHh
Confidence 2567889999999999863 25788873 37889999999998765
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=156.64 Aligned_cols=320 Identities=12% Similarity=0.044 Sum_probs=184.5
Q ss_pred cHHHHHHHHHHH-Hhccccc----CCCCCChHHHHHHH----HHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHh
Q 002941 418 QIELARDMGYTA-ARFGHVM----FPENVYEPALECAE----LLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 418 ~p~V~~Ai~~q~-~~~~~~~----~~~~~~~~~~eLae----~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~ 487 (863)
||+|.+|+..++ .+++... ..++ ++...+|++ +++++++. +.+ ++++||+.||.+++....
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A~~~~l~al~----- 111 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQANGAVYLALL----- 111 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHHHHHHHHHhc-----
Confidence 699999999995 8876532 1112 577888998 99999984 456 457999999999987652
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcch
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (863)
++ ..+||+-..+|.|....+...+ +.+ .|... .+++.. +.
T Consensus 112 ------~~----------GD~Vl~~~~~~~~~~~~g~~~~----~~~----~~~~~--~~~~~~-------------~~- 151 (416)
T PRK13034 112 ------KP----------GDTILGMSLSHGGHLTHGAKVS----LSG----KWYNA--VQYGVD-------------RL- 151 (416)
T ss_pred ------CC----------CCEEEEcCccceeeeecCCcce----ecc----ceeee--EEcccc-------------cc-
Confidence 11 1567776666544111111110 000 00000 000000 00
Q ss_pred hhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHH
Q 002941 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRIL 646 (863)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~L 646 (863)
....| .+++++.+.. .+..+|++ +++ .| +..+ +++|
T Consensus 152 --------------------~~~~d--------~~~le~~l~~-------~~~klVi~~~~~-~g---~~~d----l~~l 188 (416)
T PRK13034 152 --------------------TGLID--------YDEVEELAKE-------HKPKLIIAGFSA-YP---RELD----FARF 188 (416)
T ss_pred --------------------cCCcC--------HHHHHHHHhh-------cCCeEEEECCCc-cc---cccC----HHHH
Confidence 00011 2345555532 12346666 675 44 3333 8899
Q ss_pred HHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHH-HHHhhhcCCccceeecc
Q 002941 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA-VFDSFVGDSKLKALLHG 723 (863)
Q Consensus 647 relc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~-i~~~l~~~~~~~~~~~~ 723 (863)
.++|++||++||+|++| ++|-.+.......++ ..|++ +++|+|+|+ ..|+++++++ +.+.++.. .+++
T Consensus 189 ~~la~~~g~~livD~Ah-a~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~--~GG~v~~~~~~~~~~~~~~-----~~~~ 259 (416)
T PRK13034 189 REIADEVGALLMVDMAH-IAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGP--RGGMILTNDEEIAKKINSA-----VFPG 259 (416)
T ss_pred HHHHHHcCCEEEEeCcc-cccCcccCCCCCCCC-CceEEEEeCcccCCCC--CCeEEEECcHHHHHHHHhh-----cCCc
Confidence 99999999999999999 677776432111112 36876 457999754 2455666554 44433321 1122
Q ss_pred cCCCc-cHHHHHHHHHHHHHhcC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCC
Q 002941 724 HSYSA-HALGCAAAAKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 724 ~T~~~-~pla~AAalAaL~~l~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~ 800 (863)
.+-+. .|..++++++.++.++. +++.++++++.+++++.|.+. ..+.+.. .....++.+.+.+..
T Consensus 260 ~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~------G~~~~~~-~~~t~i~~v~~~~~~----- 327 (416)
T PRK13034 260 LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER------GYDLVSG-GTDNHLLLVDLRPKG----- 327 (416)
T ss_pred ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc------CCEeccC-CCCCcEEEEEcCCCC-----
Confidence 11122 33344445566665532 334678888888887754221 2221110 123456667665432
Q ss_pred chHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCC----CCcHHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl----~~t~eeid~~v~~L~~~l~~ 852 (863)
.....+.+.|.++||++.+. ...+|+.++. .++++|++++++.|.+++..
T Consensus 328 --~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 328 --LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred --CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 11344567888899999741 2579998887 66799999999999999875
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=153.09 Aligned_cols=314 Identities=14% Similarity=0.137 Sum_probs=190.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+.+|+++|. +.++ .+|++++|+.+++..... +..+...+|.+.++++++-. .+.+++++++++++..+++
T Consensus 20 ~~i~l~~~~--~~~~--~~~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 20 EVIKLNSNE--NPFG--PPPKAKEALRAEADKLHR-----YPDPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIR 89 (346)
T ss_pred ceEEccCCC--CCCC--CCHHHHHHHHHhHHHhhc-----CCCCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHH
Confidence 688887643 3565 479999999988754322 22222367888888877632 3679999999999988776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| .+|+....+|......+ ...| .
T Consensus 90 ~l~~---------~g------------d~v~~~~p~y~~~~~~~-~~~g------------------------------~ 117 (346)
T TIGR01141 90 AFLE---------PG------------DAVLVPPPTYSMYEISA-KIHG------------------------------A 117 (346)
T ss_pred HhcC---------CC------------CEEEEcCCCHHHHHHHH-HHcC------------------------------C
Confidence 5411 11 56888777764321110 0000 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
....+|... + ...| .+.+++.+. .++.+|++... ++..|...+
T Consensus 118 ~~~~~~~~~----------------~---~~~d--------~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~- 160 (346)
T TIGR01141 118 EVVKVPLDE----------------D---GQLD--------LEDILVAID--------DKPKLVFLCSP-NNPTGNLLS- 160 (346)
T ss_pred eEEEeccCC----------------C---CCCC--------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 001111000 0 0011 133443321 23455555543 788897776
Q ss_pred HHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 640 ~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
.+++.++|+.+ |+++|+||++.+|...+... ......++++ +++|.++ .| +++|++++++++.+.+..
T Consensus 161 ---~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~ 234 (346)
T TIGR01141 161 ---RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNK 234 (346)
T ss_pred ---HHHHHHHHHhCCCCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHh
Confidence 44555555555 99999999998775322211 2222234544 6789995 56 799999999999998864
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~ 793 (863)
. ..+++.++++++++.+.++. .++.++..+..++.++.+. +.+.+++.+.-+...|.++.+++..
T Consensus 235 ~--------~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~----~~L~~~~g~~~~~~~g~~~~~~~~~ 299 (346)
T TIGR01141 235 V--------RAPFNLSRLAQAAAIAALRD---DDFIEKTVEEINAERERLY----DGLKKLPGLEVYPSDANFVLIRFPR 299 (346)
T ss_pred c--------cCCCCCCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHH----HHHHhcCCCEECCCcCCEEEEecCC
Confidence 2 23456688888888777653 3334444444444454443 3344454443334467788887753
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEec------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
. +.++++.|.++||++.+. ++.+|+.. .+++++++++++|
T Consensus 300 -~---------~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~---~~~~~i~~~~~~l 345 (346)
T TIGR01141 300 -D---------ADALFEALLEKGIIVRDLNSYPGLPNCLRITV---GTREENDRFLAAL 345 (346)
T ss_pred -C---------HHHHHHHHHHCCeEEEeCCCcCCCCCeEEEec---CCHHHHHHHHHHh
Confidence 2 467888999999999874 36788873 3889999998876
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=153.19 Aligned_cols=338 Identities=11% Similarity=0.031 Sum_probs=191.5
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccc-----cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHH
Q 002941 412 GPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~ 486 (863)
-+|. -.+.+++|+.+....++.. .......+...++.++++++++ .+.++|++||++|+..|++...+
T Consensus 28 ~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g---~~~~~~~~g~t~a~~~al~~l~~--- 100 (387)
T PRK09331 28 RGGI-LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG---MDEARVTHGAREGKFAVMHSLCK--- 100 (387)
T ss_pred cCCC-CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHhcC---
Confidence 3565 5788888888877543321 1111234568899999999998 35789999999999999876521
Q ss_pred hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-
Q 002941 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP- 565 (863)
Q Consensus 487 ~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P- 565 (863)
.| .+|++...+ |-+...++...|.. +..++.+
T Consensus 101 ------~g------------d~Vlv~~~~-h~s~~~~~~~~G~~----------------------------~~~v~~~~ 133 (387)
T PRK09331 101 ------KG------------DYVVLDGLA-HYTSYVAAERAGLN----------------------------VREVPKTG 133 (387)
T ss_pred ------CC------------CEEEECCCc-hHHHHHHHHHcCCE----------------------------EEEEeCcc
Confidence 12 456665544 44333322221100 0111110
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
+.. ...| .+.+++.+.+.. .....++.+|+++-+ .++.|...+ +++
T Consensus 134 ~~~--------------------~~~d--------~~~l~~~l~~~~-~~~~~~~~lV~l~~~-~~~tG~~~~----l~~ 179 (387)
T PRK09331 134 YPE--------------------YKIT--------PEAYAEKIEEVK-EETGKPPALALLTHV-DGNYGNLAD----AKK 179 (387)
T ss_pred CcC--------------------CCcC--------HHHHHHHHHHhh-hccCCCCEEEEEECC-CCCCccccc----HHH
Confidence 000 0011 234555554200 001235677777765 788887766 999
Q ss_pred HHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCcccee---
Q 002941 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL--- 720 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~--- 720 (863)
|.++|++||+++|+|++| ++|..+. ....+|+ |++ +++|+++++ .++|++++++++++.+....+....
T Consensus 180 I~~la~~~g~~livD~a~-~~g~~~~--~~~~~g~--D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~ 253 (387)
T PRK09331 180 VAKVAHEYGIPFLLNGAY-TVGRMPV--DGKKLGA--DFIVGSGHKSMAAS-APSGVLATTEEYADKVFRTSRKFGVKEV 253 (387)
T ss_pred HHHHHHHcCCEEEEECCc-ccCCcCC--CHHHcCC--CEEEeeCcccccCC-CCEEEEEECHHHHhhcccccCCCcccce
Confidence 999999999999999999 4554322 2233444 665 568999877 6899999999988876542211000
Q ss_pred -ecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccceEEEEEEccCC
Q 002941 721 -LHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGTLCAIELQAAG 795 (863)
Q Consensus 721 -~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl~~~iel~~~~ 795 (863)
..+.+ ..+...++++++++.+.+. +..++..++.++++ +.+.+.+.+.-+ .....++.++...-.
T Consensus 254 ~~~~~~--~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~--------~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~ 323 (387)
T PRK09331 254 ELLGCT--LRGAPLVTLMASFPHVVERVKRWDEEVKKARWFV--------DELEKIEGFKQLGEKPRNHDLMKFETPSFD 323 (387)
T ss_pred eeecee--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCCCEEEeccCcCcCCeEEEeCCchh
Confidence 01112 2334556666777665321 11222233333333 334445332211 122334445433100
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe-cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP-LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p-~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.........+..+.+.|.++||+..+ ....+++..++.+++++++.++++|+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 324 EIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred HHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 00000001245688999999998543 33455555566789999999999999887653
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=156.00 Aligned_cols=329 Identities=13% Similarity=0.061 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcccccC---------CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 421 LARDMGYTAARFGHVMF---------PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~---------~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
+.+|+.+++++++.... ....++...++.|.|+++++ .+.+.+++||++|+..++.....
T Consensus 20 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g---~~~~~i~~g~~~a~~~~~~~l~~-------- 88 (370)
T TIGR02539 20 LTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLG---MDEARVTHGAREGKFAVMHALCK-------- 88 (370)
T ss_pred CcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhC---CCceEEECChHHHHHHHHHHhhC--------
Confidence 56777777777665321 11224567788888999988 45788899999999988875520
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+|++....|+ +...++...+.. ...+|...
T Consensus 89 -~g------------d~Vl~~~~~h~-s~~~~~~~~g~~------------------------------~~~~~~~~--- 121 (370)
T TIGR02539 89 -EG------------DWVVLDGLAHY-TSYVAAERAGLN------------------------------VKEVPHTG--- 121 (370)
T ss_pred -CC------------CEEEECCcccH-HHHHHHHHcCCE------------------------------EEEEecCC---
Confidence 11 45666444443 333322222110 00111000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
++.+ ..| .+.+++.+...- .....+..+|+++-+ .+..|.+.+ +++|.++|+
T Consensus 122 ------------~~~~--~~d--------~~~l~~~l~~~~-~~~~~~~~lv~~~~p-~~~~G~~~~----l~~i~~la~ 173 (370)
T TIGR02539 122 ------------HPEY--KVD--------PEGYGEVIEEVE-DESGKPPVLALLTHV-DGEYGNLPD----AGKVAKVCR 173 (370)
T ss_pred ------------cccC--CcC--------HHHHHHHHHHhh-hccCCCcEEEEEECC-CCCCccccC----HHHHHHHHH
Confidence 0000 011 234555553200 001123445555543 678888776 889999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCcccee----ecccC
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL----LHGHS 725 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~----~~~~T 725 (863)
+||++||+||+|. +|..+..+ . ...+|++ +++|++++| .|+|++++++++++.+.....+..+ ..++|
T Consensus 174 ~~~~~livDea~~-~g~~~~~~--~--~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 247 (370)
T TIGR02539 174 EKGVPLLLNCAYT-VGRMPVSA--K--EIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCT 247 (370)
T ss_pred HcCCeEEEECccc-cCCcCCCH--H--HcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhcccccCCccceeeeeccc
Confidence 9999999999994 55433221 1 1246765 789999876 6899999999999988753321111 01111
Q ss_pred CCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-e-eEecccceEEEEEEccCCcCCCCch
Q 002941 726 YSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRT-V-QRVVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v-~~vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
....+++++.++|+...+. +...+..++.+++++ . +.+.+. + ..-.....++.+.+...........
T Consensus 248 --~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~----~----L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~ 317 (370)
T TIGR02539 248 --SRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVA----E----LEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHK 317 (370)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHhCCcEEEccCCCcCceEEEECCchhHHhhhhc
Confidence 1223566666677643210 001111222223332 2 233332 1 1112344555555431100000000
Q ss_pred HHHHHHHHHHHHCCcE-EEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVY-MRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~-~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
..+..+.+.|+++||+ +++.. +.+|++. ..++++|+++++++|++.+++
T Consensus 318 ~~~~~~~~~L~e~GI~~ir~~~~~~iRis~-~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 318 RRGYFLYEELKKRGIHGIRSGQTKYFKLSV-YGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred cccHHHHHHHHhCCCccccCCcceEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence 1245689999999998 66643 5889885 468999999999999887654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-13 Score=149.02 Aligned_cols=305 Identities=15% Similarity=0.119 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHhhcCCCCC-CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...++.++|+++++.+.- ..++++.||+++++.++..... . +.++|....+++|...
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~----------~-----------~~~vi~~~~~~~~~~~ 89 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP----------R-----------DGKLLVLINGAYGERL 89 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC----------C-----------CCeEEEECCCchhhHH
Confidence 6678889999998874311 2578899999999999987621 1 1467777777777532
Q ss_pred cccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 522 GAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 522 gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
..++- .|. + +..++.+..+ ..|
T Consensus 90 ~~~a~~~g~---------------------~-------~~~i~~~~~~---------------------~~d-------- 112 (355)
T TIGR03301 90 AKICEYLGI---------------------P-------HTDLNFSEYE---------------------PPD-------- 112 (355)
T ss_pred HHHHHHcCC---------------------c-------eEEEecCCCC---------------------CCC--------
Confidence 21111 010 0 0111111000 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+.+ +++....+++-| .+..|...+ +++|.++|++||+++|+|++++ ||.. .+....++
T Consensus 113 ~~~l~~~l~~-----~~~~~~v~~~~~--~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~--~~~~~~~~- 177 (355)
T TIGR03301 113 LNRIEEALAA-----DPDITHVATVHH--ETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI--PIDIEELD- 177 (355)
T ss_pred HHHHHHHHHh-----CCCceEEEEEec--CCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc--ccchhhcC-
Confidence 2455666642 222223333334 455677765 7999999999999999999884 6532 23333333
Q ss_pred CCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceee-----------cccCCCccHHHHHHHHHHHHHhcChh
Q 002941 681 VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL-----------HGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 681 ~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~-----------~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
.|++ +++|+++|+ .-+|++++++++++.+........+. ....|+.++.++.++.++|+.+.+++
T Consensus 178 -~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g 255 (355)
T TIGR03301 178 -VDALIASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEG 255 (355)
T ss_pred -ccEEEecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc
Confidence 5654 668998764 34689999999988876311100000 01235667888888888998875443
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--- 823 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--- 823 (863)
..++..+..+..++.+.+.+.+. ....+.. ....|.++.+.+.... .....++.+.|.++||++.+.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~i~~~~~~~ 327 (355)
T TIGR03301 256 GVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSPIIVSFLYPDDP------DFDFDDFYQELKERGFVIYPGKLTL 327 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCCcEEEEECCCCC------cchHHHHHHHHHHCCEEEECCcccc
Confidence 22333333444455444443221 1111111 1234556667664321 0124578899999999998753
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+|+.+...+++++++++++.|++++
T Consensus 328 ~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 328 ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 689998877889999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=148.08 Aligned_cols=328 Identities=13% Similarity=0.054 Sum_probs=192.9
Q ss_pred CcHHHHHHHHHHHHhc-ccccCCCC----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 417 LQIELARDMGYTAARF-GHVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~-~~~~~~~~----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
-++.|.+|+.+.+... +....... ..+...++.++++++++.. .+.++|+++|++|+..|++.+.. +.
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~~~al~~~~~-~~----- 83 (379)
T TIGR03402 11 VDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESDNTAIKSALA-AQ----- 83 (379)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHHHHHHHHHH-hc-----
Confidence 4688999998887643 11110000 1234556778888888754 46799999999999999987632 10
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.+ +..||.....|++.......+.. .+ . .+..++.+...
T Consensus 84 -~~-----------~~~vv~~~~~~~s~~~~~~~~~~----~G-----------~-----------~v~~v~~~~~g--- 122 (379)
T TIGR03402 84 -PE-----------KRHIITTAVEHPAVLSLCQHLEK----QG-----------Y-----------KVTYLPVDEEG--- 122 (379)
T ss_pred -CC-----------CCeEEEcccccHHHHHHHHHHHH----cC-----------C-----------EEEEEccCCCC---
Confidence 11 14566666666543211111100 00 0 01111111000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
.-| .+.+++.+. +++..+++.-+ ++..|.+.+ +++|.++|+
T Consensus 123 ------------------~~~--------~~~l~~~i~--------~~~~lv~i~~~-~n~tG~~~~----~~~I~~l~~ 163 (379)
T TIGR03402 123 ------------------RLD--------LEELRAAIT--------DDTALVSVMWA-NNETGTIFP----IEEIGEIAK 163 (379)
T ss_pred ------------------cCC--------HHHHHHhcC--------CCcEEEEEEcc-cCCeeeccc----HHHHHHHHH
Confidence 001 234555542 23456767665 788898887 789999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcccee-ec-ccCCC
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKAL-LH-GHSYS 727 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~-~~-~~T~~ 727 (863)
+||+++|+|++|+ +|.. . .+.....+|++++| | +.|. ..+|++..+++.. +... ..... .. ....+
T Consensus 164 ~~g~~vivD~~~~-~g~~--~--~~~~~~~~D~~~~s~~K-~~gp-~G~g~l~v~~~~~--~~p~-~~g~~~~~~~~~gt 233 (379)
T TIGR03402 164 ERGALFHTDAVQA-VGKI--P--IDLKEMNIDMLSLSGHK-LHGP-KGVGALYIRKGTR--FRPL-LRGGHQERGRRAGT 233 (379)
T ss_pred HcCCEEEEECccc-cccc--c--cCcccCCCCEEEEcHHH-cCCC-CceEEEEECCCCC--CCCc-ccCCccCCCcCCCC
Confidence 9999999999994 5432 1 12223457999999 9 6553 4577777776531 1110 00000 00 01223
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec---cc-ceEEEEEEccCCcCCCCchH
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---AL-GTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr---g~-Gl~~~iel~~~~~~~~~~~~ 803 (863)
.|..+..+..++++++.+ +.+.+.+..+.+.+.+.+.+.+ ..+.+.-.. .. ..++.+.+....
T Consensus 234 ~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 300 (379)
T TIGR03402 234 ENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLA---RIPDARLNGDPTKRLPNTVNISFEYIE-------- 300 (379)
T ss_pred ccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHh---hCCCEEEeCCCccCCCCEEEEEecCCC--------
Confidence 466777778888887743 3556666666777666544332 234332111 01 123444443221
Q ss_pred HHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
...+...|.++||.++.+ .+.+|+++...+|++|||++++.|+++++++.+
T Consensus 301 -~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 301 -GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred -HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 356777888899998742 257999999999999999999999998877653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=149.38 Aligned_cols=212 Identities=15% Similarity=0.103 Sum_probs=134.9
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc--CCCC-cEE--EeccccC-
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL--GCVP-DIA--CYGKLLT- 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~--gv~P-Div--t~sKgLg- 692 (863)
.+.+++.| ++..|.+. +.+.+++|.++|++||+++|+||++..+...|.. ...... +..+ +++ +|||.++
T Consensus 166 ~~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 242 (393)
T PRK05764 166 KALILNSP--SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAM 242 (393)
T ss_pred eEEEEECC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccC
Confidence 34566667 67788654 6678999999999999999999999766332332 111111 2222 222 5899998
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
.| +++|++++++++++.+... ....+...+++++.++.+.|+. ..++.+++++..++.++.+ .+.++
T Consensus 243 ~G-~RiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~ 309 (393)
T PRK05764 243 TG-WRLGYAAGPKELIKAMSKL------QSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLM----VDGLN 309 (393)
T ss_pred cc-ceeEEEecCHHHHHHHHHH------HhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHH----HHHHh
Confidence 78 7999999999999987641 1123445678888888877752 2334444444444444433 33445
Q ss_pred cCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHH
Q 002941 773 SHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 773 ~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+++.+.-.++.| .++.+.+........ ....++...|+ ++||.+.++ ++.+|+. +..+++++++++++
T Consensus 310 ~~~g~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~ 384 (393)
T PRK05764 310 EIPGLECPKPEGAFYVFPNVSKLLGKSI---TDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLER 384 (393)
T ss_pred hCCCCcccCCCcceEEEEeccccccccc---CCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHH
Confidence 554443344555 455556643210000 01356777765 579999874 2678886 45689999999999
Q ss_pred HHHHHHH
Q 002941 846 LYQRLEE 852 (863)
Q Consensus 846 L~~~l~~ 852 (863)
|.+++++
T Consensus 385 l~~~~~~ 391 (393)
T PRK05764 385 IERFLES 391 (393)
T ss_pred HHHHHHh
Confidence 9988764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-13 Score=150.36 Aligned_cols=322 Identities=9% Similarity=0.064 Sum_probs=208.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+..+ .+.+|. +|.+.+++.+.+....+ ++..-..+|.+.|+++++-. .+.++++++++|++..+++
T Consensus 30 ~~i~l~~n--en~~~~--~~~v~~a~~~~~~~~~~-----Yp~~g~~~Lr~aia~~~~~~-~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 30 SFVKLASN--ENPFGC--SPRVLDELQKSWLDHAL-----YPDGGATTLRQTIANKLHVK-MEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred ceEEeCCC--CCCCCC--CHHHHHHHHHHHHhcCc-----CCCCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 56776653 456774 79999999887665332 22333456777788777643 4689999999999988887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|++..-+|.+....+... | .
T Consensus 100 ~l~~---------~g------------d~vlv~~P~y~~~~~~~~~~-g------------------------------~ 127 (366)
T PRK01533 100 AVLK---------AG------------DNIVTAGATFPQYRHHAIIE-G------------------------------C 127 (366)
T ss_pred HhcC---------CC------------CEEEEcCCcHHHHHHHHHHc-C------------------------------C
Confidence 6521 12 46888887776653322111 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... ..-| .+.+++.+. ++.-..+|+.| ++..|.+. +
T Consensus 128 ~v~~v~~~~--------------------~~~d--------~~~l~~~~~-------~~~~~v~i~~P--~NPTG~~~-~ 169 (366)
T PRK01533 128 EVKEVALNN--------------------GVYD--------LDEISSVVD-------NDTKIVWICNP--NNPTGTYV-N 169 (366)
T ss_pred EEEEeecCC--------------------CCcC--------HHHHHHHhC-------cCCcEEEEeCC--CCCCCCCc-C
Confidence 011111000 0001 234444443 12335566778 79999766 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+.+++|.++|++++ ++|+||++..|-..+.. .......-.+.++ +|||.++ .| +.+|++++++++++.+...
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~ 247 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVV 247 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHh
Confidence 677888889998876 57789999777322211 1111122234444 6799998 77 8999999999999988641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+++.++++.+++.++|+ +.++.+.+.+..+..++.+.. .++.++ +......|.++.+.+. +
T Consensus 248 --------~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~----~l~~~g-~~~~~~~~nf~~~~~~-~ 310 (366)
T PRK01533 248 --------RLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYES----FCKENE-IPFYQSQTNFIFLPVE-N 310 (366)
T ss_pred --------cCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH----HHHhCC-CccCCCcCcEEEEeCC-C
Confidence 1356788899998888885 556666665555555554433 333332 2234567888888763 2
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
...+...|+++||.+++..+.+|++ +.+.++.+.++++|++.++..
T Consensus 311 ----------~~~~~~~l~~~GI~Vr~~~~~iRis---~~~~~~~~~l~~al~~~~~~~ 356 (366)
T PRK01533 311 ----------GGEIYEACAHAGFIIRPFPNGVRIT---VGTREQNEGVISVLQQHFENK 356 (366)
T ss_pred ----------HHHHHHHHHHCCcEEccCCCceEEe---CCCHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999988889997 778999999999998876543
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-13 Score=151.37 Aligned_cols=203 Identities=17% Similarity=0.114 Sum_probs=135.2
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE---EEeccccC-CCCCC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGVIP 697 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vt~sKgLg-gG~~P 697 (863)
.++..| ++..|.+ .+++.+++|.++|++||+++|+||++.++...+..... ....++. -+|||.++ .| ++
T Consensus 157 i~i~~p--~NPtG~~-~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~~I~~~s~SK~~~~~G-~R 230 (373)
T PRK07324 157 ICINNA--NNPTGAL-MDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEKGISTNSMSKTYSLPG-IR 230 (373)
T ss_pred EEEeCC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh--hhccCCEEEEecchhhcCCcc-ce
Confidence 344455 7888854 47888999999999999999999999888554432111 1122332 37899987 67 89
Q ss_pred ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
+|++++++++++.+..- ....+++.++++..++..+|+. .+.+.++.++..+..++. +.+.+++++.+
T Consensus 231 iG~i~~~~~li~~~~~~------~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~----l~~~l~~~~~~ 298 (373)
T PRK07324 231 VGWIAANEEVIDILRKY------RDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAI----LDEWVAKEPRV 298 (373)
T ss_pred eEEEecCHHHHHHHHHH------hCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHH----HHHHHhcCCCc
Confidence 99999999999887642 2234566778888877777652 223344444443333333 33445556666
Q ss_pred eEecccce-EEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 778 QRVVALGT-LCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 778 ~~vrg~Gl-~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++..|. +..+.+.... ...+++.+|+ ++||++.|+. +.+|+. +..+++.+.+.+++|.+++
T Consensus 299 ~~~~p~gg~~~~i~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 299 SYVKPKAVSTSFVKLDVDM--------PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFL 368 (373)
T ss_pred eEECCCceEEEEEEeCCCC--------CHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 55666654 3445554221 2456777765 6799999852 678875 4567899999999999888
Q ss_pred HH
Q 002941 851 EE 852 (863)
Q Consensus 851 ~~ 852 (863)
++
T Consensus 369 ~~ 370 (373)
T PRK07324 369 RE 370 (373)
T ss_pred Hh
Confidence 65
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-12 Score=145.26 Aligned_cols=345 Identities=14% Similarity=0.062 Sum_probs=204.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE 475 (863)
..+|+..|.-. .++ -.|.+.+++.+.+.+... +....+..+....+++.+.+..+.. .. +.+++++++++|+.
T Consensus 40 ~~i~l~~g~~~-~~~--p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 40 RPVDFSHGDVD-AHE--PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CceecCCcCCC-CCC--CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 56676654433 333 357888888887765321 1111223445667777777765521 12 57999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++.... .| ..|++..-+|.+....+...+.
T Consensus 117 ~~~~~l~~---------~G------------d~Vlv~~P~y~~~~~~~~~~g~--------------------------- 148 (405)
T PRK06207 117 LAVAATVA---------RG------------DKVAIVQPDYFANRKLVEFFEG--------------------------- 148 (405)
T ss_pred HHHHHhcC---------CC------------CEEEEeCCCchhHHHHHHHcCC---------------------------
Confidence 88876521 12 5799999998775432221110
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..+++|-.+ . + ..+.+ .-| .+.+++.+.. ..-+.+++.| ++..|.
T Consensus 149 ----~v~~v~~~~---------~--~-~~~~~--~~d--------~~~l~~~~~~-------~~k~v~l~~P--~NPTG~ 193 (405)
T PRK06207 149 ----EMVPVQLDY---------L--S-ADKRA--GLD--------LDQLEEAFKA-------GVRVFLFSNP--NNPAGV 193 (405)
T ss_pred ----EEEEEeccc---------c--C-cccCC--CcC--------HHHHHHhhhh-------cCeEEEECCC--CCCCCc
Confidence 001111000 0 0 00000 011 2345555532 2234667778 788886
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
+. +.+-+++|.++|++||+++|.||++..|-..|..+ ....+...+| ++ +|||.++ .| +.+|++++++++++
T Consensus 194 ~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~ 271 (405)
T PRK06207 194 VY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFGSPAIID 271 (405)
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEcCHHHHH
Confidence 55 67889999999999999999999998774344321 1112222233 33 5799998 78 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~ 788 (863)
.+.... ...+.+.+.++.+++.+.|+- ..++.++..+..+..++.+ .+.+.+++.+.-... -|+++.
T Consensus 272 ~~~~~~------~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l----~~~L~~~~~~~~~~p~gg~fl~ 339 (405)
T PRK06207 272 RMEKLQ------AIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDL----LRVLRGVEGVFVRAPQAGSYLF 339 (405)
T ss_pred HHHHHH------hHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH----HHHHhcCCCceecCCCeeEEEE
Confidence 876411 122334455666666666641 2233333333333334333 344445544433333 467888
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.... .....++..|+ ++||.+.|+ .+.+|++. ..+++++++.+++|.++++++
T Consensus 340 ~~l~~~~-------~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~--~~~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 340 PRLPRLA-------VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNF--SQDHAAAVAAAERIAQLIERY 403 (405)
T ss_pred EeCcccC-------CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHh
Confidence 8875321 01456888887 689999873 25788864 457899999999999888654
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-13 Score=147.73 Aligned_cols=210 Identities=12% Similarity=0.012 Sum_probs=131.0
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++-.. ++..|.+.+ +++|.++|++||+++++|++| ++|.. .+....+ .+|+++. .|.++++ .
T Consensus 124 ~~~~v~i~~~-~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~-~~g~~--~~~~~~~--~~d~~~~s~~K~l~~p-~ 192 (356)
T cd06451 124 DIKAVTLTHN-ETSTGVLNP----LEGIGALAKKHDALLIVDAVS-SLGGE--PFRMDEW--GVDVAYTGSQKALGAP-P 192 (356)
T ss_pred CCCEEEEecc-CCCcccccC----HHHHHHHHHhcCCEEEEeeeh-hccCc--ccccccc--CccEEEecCchhccCC-C
Confidence 3445555444 677887766 889999999999999999998 46532 2222222 3577755 6999876 4
Q ss_pred CceeeeccHHHHHhhhc-CCcccee---------ec---ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVG-DSKLKAL---------LH---GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~-~~~~~~~---------~~---~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l 763 (863)
.+|+++++++.++.+.. ......+ .. ..+.+.++.+++++.++++.+.+.+ .+++.+....+.+.+
T Consensus 193 g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~-~~~~~~~~~~~~~~l 271 (356)
T cd06451 193 GLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEG-LENRWARHRRLAKAL 271 (356)
T ss_pred CcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 68899999998887652 0000000 00 1223346777788889998875533 233344444444444
Q ss_pred HHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCCCCcH
Q 002941 764 DLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSP 836 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl~~t~ 836 (863)
.+.+.+. ....+....+ .+.+..+.+.... ....+++.|.++ ||++.+. ++.+|+++...+|+
T Consensus 272 ~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~ 341 (356)
T cd06451 272 REGLEAL--GLKLLAKPELRSPTVTAVLVPEGV--------DGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATR 341 (356)
T ss_pred HHHHHHc--CCeeccCcccCCCceEEEECCCCC--------CHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCH
Confidence 4443321 1222211112 2233334332211 256789999998 9999753 46899999889999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRL 850 (863)
Q Consensus 837 eeid~~v~~L~~~l 850 (863)
||+++++++|++++
T Consensus 342 e~v~~~~~~l~~~~ 355 (356)
T cd06451 342 EDVLGVLSALEEAL 355 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-12 Score=146.30 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=132.4
Q ss_pred EEEEE-ccccccCCCceeCCHHHHHHHHHHHHHc-CCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccCCCC
Q 002941 621 GALII-EPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLTGGV 695 (863)
Q Consensus 621 AAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~-gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLggG~ 695 (863)
+.+++ .| ++..|... +.+.+++|.++|++| ++++|.||++..|...+..-... ...+.++ +|||.++.|
T Consensus 214 ~i~~~p~p--~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~~~~vi~~~SfSK~~~~G- 287 (431)
T PRK15481 214 AVILTPRA--HNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QTTQRWALIRSVSKALGPD- 287 (431)
T ss_pred EEEECCCC--CCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CCCCCEEEEeeeccccCCC-
Confidence 34555 66 88888665 788899999999999 99999999998773222111111 1123443 789999988
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh---HHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT---NHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l---~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+.+|++++++++++.+... ....+++.+.+++.++.++|+ +.++ .+++++..+..++.+. +.+.
T Consensus 288 lRiG~~i~~~~~~~~~~~~------~~~~~~~~s~~~q~a~~~~l~---~~~~~~~l~~~~~~~~~~r~~~~----~~L~ 354 (431)
T PRK15481 288 LRLAFVASDSATSARLRLR------LNSGTQWVSHLLQDLVYACLT---DPEYQARLAQARLFYAQRRQKLA----RALQ 354 (431)
T ss_pred ceeEEEeCCHHHHHHHHHH------HhccccCCCHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 8999999999998887531 122334567888888888776 3333 3333333333344333 3333
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
++..-.....-|+++.+.+..+ ...++..|.++||.+.|+ ++.+|+... ..++++++++++
T Consensus 355 ~~~~~~~~p~gg~f~~~~l~~~----------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~-~~~~~~i~~~~~ 423 (431)
T PRK15481 355 QYGIAIPSPGDGLNLWLPLDTD----------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLS-TLNDAEINRLAA 423 (431)
T ss_pred HcCCccccCCCeEEEEEECCCC----------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcC-CCChHHHHHHHH
Confidence 3332111244577777877532 356788888999999873 146888632 357899999999
Q ss_pred HHHHHHH
Q 002941 845 KLYQRLE 851 (863)
Q Consensus 845 ~L~~~l~ 851 (863)
+|.+++.
T Consensus 424 ~l~~~~~ 430 (431)
T PRK15481 424 DLHQALN 430 (431)
T ss_pred HHHHHhc
Confidence 9988864
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-12 Score=145.55 Aligned_cols=328 Identities=16% Similarity=0.139 Sum_probs=208.4
Q ss_pred CcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 417 LQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..+.+.+|+.+++.... +++...+.-+....+++++....+.. .. +.|+.++++++|+-.++...+. .
T Consensus 42 ~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~---------p 112 (393)
T COG0436 42 TPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLN---------P 112 (393)
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcC---------C
Confidence 46789999999988764 33333444556666777777665421 11 3499999999999999876631 2
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..||..+-+|=........+++.. +++|-..
T Consensus 113 G------------DeVlip~P~Y~~y~~~~~~~gg~~-------------------------------v~v~l~~----- 144 (393)
T COG0436 113 G------------DEVLIPDPGYPSYEAAVKLAGGKP-------------------------------VPVPLDE----- 144 (393)
T ss_pred C------------CEEEEeCCCCcCHHHHHHhcCCEE-------------------------------EEEeCCc-----
Confidence 2 469998888855543333332211 1111000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
. ..-|. -| .+.+++.+. +..-+.++.-| .+..|. +.+++++++|.++|++|
T Consensus 145 -------~--~~~f~--~d--------~~~l~~~i~-------~ktk~i~ln~P--~NPTGa-v~~~~~l~~i~~~a~~~ 195 (393)
T COG0436 145 -------E--ENGFK--PD--------LEDLEAAIT-------PKTKAIILNSP--NNPTGA-VYSKEELKAIVELAREH 195 (393)
T ss_pred -------C--ccCCc--CC--------HHHHHhhcC-------ccceEEEEeCC--CCCcCc-CCCHHHHHHHHHHHHHc
Confidence 0 00000 11 234555543 23446666688 788885 55889999999999999
Q ss_pred CCeEEEecccccccccCC--cchhhhcCCCCc-EE---EeccccC-CCCCCceeeecc-HHHHHhhhcCCccceeecccC
Q 002941 654 KIPVIFDEVFTGFWRLGV--ETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHS 725 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~--~~a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T 725 (863)
|+++|+|||+.+|...|. ....+..+- -| .+ .|||..+ .| +.+|+++++ +++.+.+.. +....+
T Consensus 196 ~i~ii~DEiY~~l~yd~~~~~s~~~~~~~-~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~------~~~~~~ 267 (393)
T COG0436 196 DIIIISDEIYEELVYDGAEHPSILELAGA-RDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRK------LKSYLT 267 (393)
T ss_pred CeEEEEehhhhhcccCCCCcCCHhhcCCC-cceEEEEecccccccccc-cceeEeecChHHHHHHHHH------HHHhcc
Confidence 999999999999987774 222222221 13 33 5799776 56 999999999 888887762 123345
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEE-EEccCCcCCCCchH
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAI-ELQAAGCNAGYGSL 803 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~i-el~~~~~~~~~~~~ 803 (863)
++.+.++..||.++|+.-++.++.+..++.-++.++.+ .+.+.+.+.+..+. ..|.|+.+ .+....
T Consensus 268 ~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l----~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~-------- 335 (393)
T COG0436 268 SCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLL----VEALNEIGGLSVVKPPEGAFYLFPKIPELL-------- 335 (393)
T ss_pred cCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH----HHHHHhcCCeeeccCCCeeEEEEeecCCCC--------
Confidence 67888999999999985422234454444444444433 34455566555555 55666554 443211
Q ss_pred HHHHHHHHHHH-CCcEEEec---C-----CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLRE-DGVYMRPL---G-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 804 ~~~~l~~~l~e-~GV~~~p~---g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
...+|+..|++ .||.+.|+ | +.+|+ +++.++++++++++++.+.+..
T Consensus 336 d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRi--s~~~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 336 DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRL--SLATSEETLEEALRRLARFLAE 391 (393)
T ss_pred CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEE--EEecCHHHHHHHHHHHHHHHHh
Confidence 25667777775 58999873 2 46777 4677789999999999988765
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-12 Score=143.55 Aligned_cols=319 Identities=15% Similarity=0.154 Sum_probs=215.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC-CCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG-KGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p-~~~~~~v~f~~SGSeAvE~AL 478 (863)
..+|+.+ .-+++|- .|.+.+++.+.++.+. .|+.+...+|.+++++..+ .. .+.|+.+|+..|..+..+
T Consensus 23 ~~i~Lss--NenP~gp--~~~~~~~~~~~~~~~~-----rYPd~~~~~l~~a~a~~~~~~~-~~~V~~gnGsde~i~~l~ 92 (356)
T COG0079 23 GIIKLSS--NENPYGP--PPKVIEAIRAALDKLN-----RYPDPDYRELRAALAEYYGVVD-PENVLVGNGSDELIELLV 92 (356)
T ss_pred cceeecC--CCCCCCC--CHHHHHHHHHHHHhhc-----cCCCCcHHHHHHHHHHHhCCCC-cceEEEcCChHHHHHHHH
Confidence 3566664 2466774 5899999998887543 3455567889999998877 33 468898999999998888
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
++... .| .+|+....+|.-....+...+..
T Consensus 93 ~~~~~---------~g------------d~vl~~~Ptf~~Y~~~a~~~g~~----------------------------- 122 (356)
T COG0079 93 RAFVE---------PG------------DTVLIPEPTFSMYEIAAQLAGAE----------------------------- 122 (356)
T ss_pred HHhhc---------CC------------CEEEEcCCChHHHHHHHHhcCCe-----------------------------
Confidence 76621 12 47999888886654444332210
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
++.++... + . .| .+.+...+. .+.-..+|+.| .+..|..+
T Consensus 123 ~~~v~~~~-~-------------------~--~d--------~~~~~~~~~-------~~~~lv~i~nP--NNPTG~~~- 162 (356)
T COG0079 123 VVKVPLKE-F-------------------R--LD--------LDAILAAIR-------DKTKLVFLCNP--NNPTGTLL- 162 (356)
T ss_pred EEEecccc-c-------------------c--cC--------HHHHHHhhh-------cCCCEEEEeCC--CCCCCCCC-
Confidence 11111111 1 0 11 112222332 12345788999 68888766
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
+.+-++++.+.|.+ +++||+||++..|+. .-...... .++ ++ ||||++| .| +.+|++++++++++.+..
T Consensus 163 ~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~-~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~ 236 (356)
T COG0079 163 PREELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLK-YPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNK 236 (356)
T ss_pred CHHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhcc-CCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHH
Confidence 55557777777777 999999999998855 22222222 344 55 8999776 56 899999999999999985
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-EecccceEEEEEEc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RVVALGTLCAIELQ 792 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~vrg~Gl~~~iel~ 792 (863)
....|.-|-++.+++.++|+. .++.+..++....-++++ .+.+++++ +. -..+.+.|+.+.+.
T Consensus 237 --------vr~p~~v~~~a~~aa~aal~~---~~~~~~~~~~~~~~r~rl----~~~l~~~~-~~~v~pS~aNFvlv~~~ 300 (356)
T COG0079 237 --------VRPPFNVSSPALAAAIAALRD---ADYLEESVERIREERERL----YAALKALG-LFGVFPSQANFVLVRVP 300 (356)
T ss_pred --------hcCCCCCCHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHH----HHHHHhCC-CCeecCCCCcEEEEECC
Confidence 335677888999999998873 355555566555555544 44555665 33 34556888888876
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+ . . +..+.+.|+++||++|.+. +.+|++ +-|+||.++++++|.+++..
T Consensus 301 ~-~-------~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 301 D-A-------E-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLKG 354 (356)
T ss_pred C-c-------c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHhc
Confidence 4 1 2 5578999999999999864 489987 67889889999999887754
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-12 Score=143.39 Aligned_cols=323 Identities=13% Similarity=0.053 Sum_probs=190.6
Q ss_pred cHHHHHHHHHHHHhc--ccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
.+.+.+++.+.+... .+.. ..+..+....+++.+....+.+ ..+.+++++++++|...++.+... .|
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~---------~g 116 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTA-ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVD---------PG 116 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCC-CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcC---------CC
Confidence 588999988887642 1211 1222334455565555432211 136899999999999988865421 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
..|++.+-+|.+........+. .+..++....
T Consensus 117 ------------d~vlv~~p~y~~~~~~~~~~g~-----------------------------~~~~v~~~~~------- 148 (387)
T PRK08960 117 ------------KHWLLADPGYPCNRHFLRLVEG-----------------------------AAQLVPVGPD------- 148 (387)
T ss_pred ------------CEEEEcCCCCcchHHHHHhcCC-----------------------------eEEEEecCcc-------
Confidence 5688888888775432221110 0011111100
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..|. -| .+.+++.+. ++....+++.| ++..|... +.+.+++|.++|++||
T Consensus 149 ----------~~~~--~d--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~ 198 (387)
T PRK08960 149 ----------SRYQ--LT--------PALVERHWN-------ADTVGALVASP--ANPTGTLL-SRDELAALSQALRARG 198 (387)
T ss_pred ----------cCCC--CC--------HHHHHHHhC-------ccceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcC
Confidence 0000 01 134444443 23456778888 78888665 6788999999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p 730 (863)
+++|+||++..|-..+... ......++++ +|||.+| .| +++|++++++++++.+..- ....+.+.+.
T Consensus 199 ~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~------~~~~~~~~s~ 269 (387)
T PRK08960 199 GHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKL------AQNLYISAST 269 (387)
T ss_pred CEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHH------HhhhccCCCH
Confidence 9999999998773222211 1233456766 4799996 77 8999999999999877531 1223445677
Q ss_pred HHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHH
Q 002941 731 LGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLL 809 (863)
Q Consensus 731 la~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~ 809 (863)
++..++.++|+- +..++..++++..+..++.+ .+.+++++....+ ..-|.++.+++.+.. .....++
T Consensus 270 ~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l----~~~L~~~~~~~~~~p~g~~f~~~~~~~~~-------~~~~~~~ 337 (387)
T PRK08960 270 PAQHAALACFEP-ETLAILEARRAEFARRRDFL----LPALRELGFGIAVEPQGAFYLYADISAFG-------GDAFAFC 337 (387)
T ss_pred HHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHH----HHHHHhcCCcCCcCCCeeEEEEEeccccC-------CCHHHHH
Confidence 887777777642 11233344444333334433 3344445432112 334677777775411 0145677
Q ss_pred HHHH-HCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 810 KKLR-EDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 810 ~~l~-e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.|+ ++||.+.|+ ++.+|++.. .+.+.+.+++++|.++++
T Consensus 338 ~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 338 RHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR 386 (387)
T ss_pred HHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 7766 689999873 257888644 367777777777766553
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-12 Score=142.05 Aligned_cols=341 Identities=10% Similarity=0.053 Sum_probs=198.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-------hHHHHHHHHHHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~p~~~~~~v~f~~SGSe 472 (863)
-|||..+ .|. -.+.+.+|+.+.+....... ....+ +...++.+.|+++++....+.+.|++++++
T Consensus 18 iyld~a~------~~~-~p~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 18 VYLDSAA------TAL-KPQAVIDATQQFYRLSSGTV-HRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred EEeeCcc------ccC-CCHHHHHHHHHHHHhcCCCC-CCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 6788443 343 45788888888775432111 01111 234567788888887421367999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
++..++..... .... . ..+||+....|++.......+.. ..+.
T Consensus 90 ~l~~~~~~~~~---~~~~--~------------gd~Vl~~~~~~~s~~~~~~~~~~--------------~~g~------ 132 (398)
T TIGR03392 90 SINLVAQSYAR---PRLQ--P------------GDEIIVSEAEHHANLIPWLMVAQ--------------QTGA------ 132 (398)
T ss_pred HHHHHHHHhhh---ccCC--C------------CCEEEECCcchhHHHHHHHHHHH--------------HcCc------
Confidence 99988875411 0000 1 15788888888763211111100 0000
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
.+..++.+..+ .-| .+.+++.+. + +..+|++.-+ ++.
T Consensus 133 -----~v~~v~~~~~~---------------------~~~--------~~~l~~~i~-------~-~t~lv~i~~~-~n~ 169 (398)
T TIGR03392 133 -----KVVKLPIGADL---------------------LPD--------IRQLPELLT-------P-RTRILALGQM-SNV 169 (398)
T ss_pred -----EEEEEecCCCC---------------------CcC--------HHHHHHHhc-------c-CceEEEEECc-ccc
Confidence 01111111000 001 234555553 2 2344454443 788
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~ 710 (863)
.|.+.+ +++|.++|++||+++|+|++|. +|.. ..... ...+|++++| |.++- .-+|++++++++++.
T Consensus 170 tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~ 238 (398)
T TIGR03392 170 TGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--PPDVQ--ALDIDFYAFSGHKLYGP--TGIGVLYGKTELLEA 238 (398)
T ss_pred ccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC--CCChh--hcCCCEEEEecccccCC--CceEEEEEcHHHHhh
Confidence 888876 8899999999999999999994 4432 11222 2347999998 95542 237888899998876
Q ss_pred hhcCCcccee--------------eccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 711 FVGDSKLKAL--------------LHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 711 l~~~~~~~~~--------------~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+......... ...+ +-+.|..++++..++++.+++.++ +++.+....+.+.+. +.+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~-~~i~~~~~~l~~~l~----~~l~~l~ 313 (398)
T TIGR03392 239 MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDI-AAAEAWSVSLADLAE----ERLAQLP 313 (398)
T ss_pred CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHH----HHHhcCC
Confidence 6421000000 0000 013455678888888888755443 355555555665443 3344555
Q ss_pred CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHH
Q 002941 776 TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 776 ~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~ 841 (863)
.+.-.. ....++.+.+.... ...+.+.|.++||.+++. ++.+|+++...+|++|+++
T Consensus 314 g~~~~~~~~~~i~~~~~~~~~---------~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~ 384 (398)
T TIGR03392 314 GFRSFRCPGSSLLAFDFAGVH---------HSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDA 384 (398)
T ss_pred CeEEeCCCCCcEEEEEeCCcC---------HHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHH
Confidence 432221 12345555554221 356788889999999753 2589999988899999999
Q ss_pred HHHHHHHHHHHH
Q 002941 842 LLLKLYQRLEEF 853 (863)
Q Consensus 842 ~v~~L~~~l~~l 853 (863)
++++|+++++.+
T Consensus 385 l~~~l~~~~~~~ 396 (398)
T TIGR03392 385 LVDAVGAALELL 396 (398)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=141.60 Aligned_cols=342 Identities=11% Similarity=0.072 Sum_probs=198.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCC------CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~------~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|||..+ .|- -.+.+.+|+.+.++........+ ...+...++.++|+++++....+.|.|++|++++
T Consensus 21 ~yld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 21 VYLDSAA------TAL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTES 93 (401)
T ss_pred EEEeCCc------ccC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHH
Confidence 6888443 343 45788888887776532111000 0123455777888888875224689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++.... . ....| .+||+.+..|++.......+.. . . +.
T Consensus 94 i~~~~~~~~~---~--~~~~g------------d~vl~~~~~~~s~~~~~~~~~~--~-~-----------g~------- 135 (401)
T PRK10874 94 INLVAQSYAR---P--RLQPG------------DEIIVSEAEHHANLVPWLMVAQ--Q-T-----------GA------- 135 (401)
T ss_pred HHHHHHHhhh---c--cCCCc------------CEEEECCcchHHHHHHHHHHHH--H-h-----------CC-------
Confidence 9988876511 0 00011 5788888887763211111100 0 0 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+..+ ..| .+.+++.+. ++ ..+|++.-+ ++..
T Consensus 136 ----~v~~v~~~~~~---------------------~~d--------~~~l~~~i~-------~~-t~lv~i~~~-~n~t 173 (401)
T PRK10874 136 ----KVVKLPLGADR---------------------LPD--------VDLLPELIT-------PR-TRILALGQM-SNVT 173 (401)
T ss_pred ----EEEEEecCCCC---------------------cCC--------HHHHHHhcC-------cC-cEEEEEeCC-cccc
Confidence 01111111000 001 234555442 22 344545444 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++|. +|..- .... ...+|++++| |.+|- .-+|++.+++++.+.+
T Consensus 174 G~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~ 242 (401)
T PRK10874 174 GGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP--ADVQ--ALDIDFYAFSGHKLYGP--TGIGVLYGKSELLEAM 242 (401)
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc--CCch--hcCCCEEEEecccccCC--CccEEEEEchHHHhcC
Confidence 98876 8899999999999999999994 44331 1122 2347988776 95541 2258888999988766
Q ss_pred hcCCc-cce-------------eeccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 712 VGDSK-LKA-------------LLHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 712 ~~~~~-~~~-------------~~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
..-.. ... ....+ .-+.|..+.++..++++.+++.+. +++.+..+.+.+.+. +.++++|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~-~~~~~~~~~l~~~l~----~~l~~~~g 317 (401)
T PRK10874 243 SPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDI-NQAESWSRSLATLAE----DALAKLPG 317 (401)
T ss_pred CCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHH----HHHhcCCC
Confidence 42100 000 00000 013355677788888887755432 334555555555443 33445554
Q ss_pred eeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHH
Q 002941 777 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 777 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.-++ ..+.++.+.+.... ..++.+.|.++||.+++. .+.+|+++...+|++|+|.+
T Consensus 318 ~~~~~~~~~~i~~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~l 388 (401)
T PRK10874 318 FRSFRCQDSSLLAFDFAGVH---------HSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDAL 388 (401)
T ss_pred EEEeCCCCCcEEEEEECCcC---------HHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHH
Confidence 43332 23346666654321 356778889999999752 26799999888999999999
Q ss_pred HHHHHHHHHHH
Q 002941 843 LLKLYQRLEEF 853 (863)
Q Consensus 843 v~~L~~~l~~l 853 (863)
+++|+++++.+
T Consensus 389 l~al~~~~~~~ 399 (401)
T PRK10874 389 VNAVDRALELL 399 (401)
T ss_pred HHHHHHHHHHh
Confidence 99999987754
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-12 Score=143.71 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=136.3
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV 695 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~ 695 (863)
+++.+|++..+ ++..|.+.| +++|.++|++||+++++|++|+ +|.. .+..+.+| +|++++ -|.|.||
T Consensus 170 ~~t~lv~~~~v-~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~g--vD~~~~s~hK~l~g~- 238 (406)
T TIGR01814 170 DDIAVILLSGV-QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWG--VDFACWCTYKYLNAG- 238 (406)
T ss_pred CCeEEEEEecc-ccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCC--CCEEEEcCccccCCC-
Confidence 46788999997 899999887 9999999999999999999994 6544 23333344 577655 5999877
Q ss_pred CCceeeeccHHHHHhhhcC-Ccc------ceeecccC----------CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGD-SKL------KALLHGHS----------YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~-~~~------~~~~~~~T----------~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
|-+++..+++..+.+... ..+ ..+....+ .+.|..++++..++|+++++.+ .++++++...
T Consensus 239 -pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~ 316 (406)
T TIGR01814 239 -PGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAG-MEALRKKSLL 316 (406)
T ss_pred -CCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 335455544433322210 000 00000011 1245678888888999986544 3556666667
Q ss_pred HHHHHHHHHHHHHhcCCCe---e--EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEec-C
Q 002941 759 LRELWDLELIQQISSHRTV---Q--RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMC-G 831 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p~v---~--~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~p-p 831 (863)
+.+++.+.+.+.....+.+ . +.+.++.++.+.+. .. ...+.+.|.++||++...+ +.+|++| +
T Consensus 317 l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~---------~~~~~~~L~~~gi~v~~~~~~~iRiS~~~ 386 (406)
T TIGR01814 317 LTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP---------GKAVFQALIKRGVIGDKREPSVIRVAPVP 386 (406)
T ss_pred HHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC---------HHHHHHHHHHCCEEEeccCCCeEEEechh
Confidence 7666655443321101222 1 12234556777665 22 4568888999999987654 7899998 6
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l 850 (863)
..+|++|||+++++|++++
T Consensus 387 ~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 387 LYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 8899999999999998765
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.5e-12 Score=141.25 Aligned_cols=324 Identities=10% Similarity=0.072 Sum_probs=189.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC------CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
-.+.+.+|+.+.++........+. ..+...++.+.|+++++....+.+++++||++|+..+++.+.. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~----~~- 85 (373)
T cd06453 11 KPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGR----AN- 85 (373)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhh----cC-
Confidence 457888888887765422110111 1233456778888888743125799999999999999977621 00
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
++ ..+||+...+|-+.. ....... . .. +. .+..++.....
T Consensus 86 ---~~----------g~~vl~~~~~~~~~~-~~~~~~~-~-~~-----------g~-----------~~~~v~~~~~~-- 125 (373)
T cd06453 86 ---KP----------GDEIVTSVMEHHSNI-VPWQQLA-E-RT-----------GA-----------KLKVVPVDDDG-- 125 (373)
T ss_pred ---CC----------CCEEEECcchhHHHH-HHHHHHH-h-hc-----------Cc-----------EEEEeecCCCC--
Confidence 00 146777665544321 1100000 0 00 00 01111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+. +++.+|++.-+ .+..|...+ +++|.++|
T Consensus 126 -------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~~~tG~~~~----~~~i~~~~ 165 (373)
T cd06453 126 -------------------QLD--------LEALEKLLT--------ERTKLVAVTHV-SNVLGTINP----VKEIGEIA 165 (373)
T ss_pred -------------------CcC--------HHHHHHHhc--------CCceEEEEeCc-ccccCCcCC----HHHHHHHH
Confidence 001 244555553 24556666554 677888776 78999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc----ccee-ecc
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK----LKAL-LHG 723 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~----~~~~-~~~ 723 (863)
++||++|++|++++ +|... +... ...+|+++++ |.+++ ..+|++++++++.+.+..... .... ...
T Consensus 166 ~~~~~~li~D~a~~-~~~~~--~~~~--~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 238 (373)
T cd06453 166 HEAGVPVLVDGAQS-AGHMP--VDVQ--DLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEE 238 (373)
T ss_pred HHcCCEEEEEhhhh-cCcee--eecc--ccCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCCccccccccc
Confidence 99999999999985 44331 1122 2357999988 99875 457889999998887653110 0000 000
Q ss_pred ----------cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccceEEEEE
Q 002941 724 ----------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGTLCAIE 790 (863)
Q Consensus 724 ----------~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl~~~ie 790 (863)
...+.+..+..+..++++.+++.++ +.+.+...++.+++. +.+.+++.+.-+ ...+.++.+.
T Consensus 239 ~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~-~~~~~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (373)
T cd06453 239 TTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGM-EAIAAHEHELTAYAL----ERLSEIPGVRVYGDAEDRAGVVSFN 313 (373)
T ss_pred cccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHH----HHHhcCCCeEEeCCccccCCeEEEE
Confidence 0112344556666777887765543 444555555555443 334445533322 3356677777
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+.... ..++.+.|.++||.+++. .+.+|+++...+|++|+|+++++|
T Consensus 314 ~~~~~---------~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 314 LEGIH---------PHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred ECCcC---------HHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 64322 457888999999988642 368999999999999999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-12 Score=141.77 Aligned_cols=317 Identities=14% Similarity=0.078 Sum_probs=195.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++++..+ .+.++ -+|.+.+|+.+.+..... |..+...+|.+.+++..+-. .+.|++++++++++..++.
T Consensus 44 ~~i~l~~~--~~~~~--~~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 44 GAVFLNAN--ECPLG--PSPAARDAAARSAALSGR-----YDLELEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CcEEecCC--CCCCC--CCHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 56665543 23455 479999999887755332 22233667888888877643 4789999999999998887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| .+|+..+-+|.+....+...+.
T Consensus 114 ~l~~---------~g------------d~Vli~~P~y~~~~~~~~~~g~------------------------------- 141 (370)
T PRK09105 114 AFTS---------PT------------AGLVTADPTYEAGWRAADAQGA------------------------------- 141 (370)
T ss_pred HHcC---------CC------------CEEEEeCCChHHHHHHHHHcCC-------------------------------
Confidence 5521 12 5688888887665332221110
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|... .+ ..| .+.+++. .++....+++.| ++..|.+. +
T Consensus 142 ~~~~v~~~~-----------------~~--~~d--------~~~l~~~--------~~~~~~v~l~nP--~NPTG~~~-~ 183 (370)
T PRK09105 142 PVAKVPLRA-----------------DG--AHD--------VKAMLAA--------DPNAGLIYICNP--NNPTGTVT-P 183 (370)
T ss_pred eEEEecCCC-----------------CC--CCC--------HHHHHhc--------CCCCCEEEEeCC--CCCCCcCc-C
Confidence 001111000 00 001 1222221 122345677888 78899765 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+.++++.+.|+ +|+++|+||++..|+.. ....+..+..++++ +|||.+| .| +.+|++++++++++.+...
T Consensus 184 ~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~--~s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~~- 258 (370)
T PRK09105 184 RADIEWLLANKP-AGSVLLVDEAYIHFSDA--PSVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLARF- 258 (370)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHHhccC--cchHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHHhc-
Confidence 666777777764 59999999999777431 11122223345655 5799997 67 8999999999999887641
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+..+..++.++.++|+ ++++.+..++..++.++.+.+. +.+++ +.-....|.++.+.+..+
T Consensus 259 --------~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~----L~~~g-~~~~~~~~~f~~~~~~~~- 321 (370)
T PRK09105 259 --------GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAW----LKKKG-YKCTPSQANCFMVDVKRP- 321 (370)
T ss_pred --------CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHH----HHHCC-CCcCCCCCcEEEEeCCCC-
Confidence 233456666666666664 4566666666666666655444 33333 222345666666655321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe----cCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p----~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++++.|.++||+++. ..+.+|++ ..+++++++++++|++.+
T Consensus 322 ---------~~~l~~~L~~~gI~v~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 322 ---------AKAVADAMAKQGVFIGRSWPIWPNWVRVT---VGSEEEMAAFRSAFAKVM 368 (370)
T ss_pred ---------HHHHHHHHHHCCcEEecCCCCCCCeEEEE---cCCHHHHHHHHHHHHHHh
Confidence 46788999999999952 13688887 346888999988887654
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=139.67 Aligned_cols=321 Identities=13% Similarity=0.089 Sum_probs=190.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+.. +.+.+|- .|.+.+|+.+.+..... ++.....+|.+.++++++-. .+.+++++++++++..+++
T Consensus 21 ~~i~l~~--~~~~~~~--p~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~it~Ga~~~l~~~~~ 90 (356)
T PRK08056 21 QLLDFSA--NINPLGM--PVSLKRAIIDNLDCAER-----YPDVEYRHLHQALARHHQVP-ASWILAGNGETESIFAVVS 90 (356)
T ss_pred hEEEecc--ccCCCCC--CHHHHHHHHHHHHhccc-----CcCccHHHHHHHHHHHhCcC-hhhEEECCCHHHHHHHHHH
Confidence 6778775 3456774 68999999887765432 22223567777777777543 3689999988898887776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . . .+++....+|......+... | .
T Consensus 91 ~l-~---------~-------------g~viv~~P~y~~~~~~~~~~-g------------------------------~ 116 (356)
T PRK08056 91 GL-K---------P-------------RRAMIVTPGFAEYRRALQQV-G------------------------------C 116 (356)
T ss_pred Hh-C---------C-------------CCEEEeCCCcHHHHHHHHHc-C------------------------------C
Confidence 43 1 1 13566666664432211111 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... .++ .... ..+.+.+. +..-+.++..| ++..|. +.+
T Consensus 117 ~~~~v~~~~---------------------~~~-~~~~----~~~~~~~~-------~~~k~v~l~~p--~NPTG~-~~~ 160 (356)
T PRK08056 117 EIRRYSLRE---------------------ADG-WQLT----DAILEALT-------PDLDCLFLCTP--NNPTGL-LPE 160 (356)
T ss_pred eEEEEeccc---------------------ccC-CCcc----HHHHHhcc-------CCCCEEEEeCC--cCCCCC-CCC
Confidence 111111000 000 0000 11112221 22224455677 788997 568
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE-E--EeccccC-CCCCCceeeec-cHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI-A--CYGKLLT-GGVIPLAATLA-TNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi-v--t~sKgLg-gG~~Pigav~~-~~~i~~~l~~~ 714 (863)
.+.+++|.++|++||+++|+||++.+|-..+..+.. .+.-.+.+ + +|||.++ .| +.+|++++ ++++++.+...
T Consensus 161 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G-~RiG~~v~~~~~~~~~l~~~ 238 (356)
T PRK08056 161 RQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP-QLADNPHLWVLRSLTKFYAIPG-LRLGYLVNSDDAAVARMRRQ 238 (356)
T ss_pred HHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHH-HhccCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHh
Confidence 899999999999999999999999887433321111 11112333 3 6799998 78 89999998 46777766531
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
...++.+.++.+++.+.|+ ++.+..+.++..+..++.+ .+.+.+.+.+......|.++.+.+..+
T Consensus 239 --------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
T PRK08056 239 --------QMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARF----YQALCALPLLTVWPGRANYLFLRCERP 303 (356)
T ss_pred --------CCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH----HHHHhcCCCcEEcCCCCcEEEEEcCCC
Confidence 1234556666666666553 4555544444444444433 334445544333344567766665422
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++++.|.++||.+++.. +.+|++ ..++++.+.++++|++.+
T Consensus 304 ----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 304 ----------DIDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERLLAALRNVL 353 (356)
T ss_pred ----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHHHHHHHHHH
Confidence 3468889999999998632 578887 457888899998887764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=142.69 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=133.0
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCCCcEE---EeccccC-CC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIA---CYGKLLT-GG 694 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDiv---t~sKgLg-gG 694 (863)
+.+|++... ++..|.+ .+.+.+++|.++|++||+++|+||++..|-..+..... +..+..+.++ +|||.++ .|
T Consensus 188 ~k~i~i~~p-~NPtG~~-~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G 265 (413)
T PLN00175 188 TRAILINTP-HNPTGKM-FTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTG 265 (413)
T ss_pred ceEEEecCC-CCCCCcC-CCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcc
Confidence 344555443 7888865 47889999999999999999999999877433322111 2222223333 6799998 78
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+++|++++++++++.+... ....+++.+++...++.++|+. .+.+.+++++..+..++.+.+ .+.++
T Consensus 266 -~RiG~~v~~~~l~~~l~~~------~~~~~~~~s~~~Q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~----~L~~~ 332 (413)
T PLN00175 266 -WKIGWAIAPPHLTWGVRQA------HSFLTFATATPMQWAAVAALRA--PESYYEELKRDYSAKKDILVE----GLKEV 332 (413)
T ss_pred -hheeeeEeCHHHHHHHHHH------HhhccCCCCHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHH----HHHHC
Confidence 8999999999999887641 1223567788888888777753 233444445444444444433 33334
Q ss_pred CCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec----------CCEEEEecCCCCcHHHHHHH
Q 002941 775 RTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL----------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 775 p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~----------g~~lr~~ppl~~t~eeid~~ 842 (863)
+ +......| .++.+.+...+ .. ...+++..|+ ++||.+.|. .+.+|+.. +.++++++++
T Consensus 333 g-~~~~~p~g~~f~~~~~~~~~----~~--~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~--~~~~e~l~~~ 403 (413)
T PLN00175 333 G-FKVYPSSGTYFVMVDHTPFG----FE--NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAF--CKDEETLRAA 403 (413)
T ss_pred C-CeecCCCeeEEEEEeccccC----CC--CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEE--cCCHHHHHHH
Confidence 3 22233444 45556553211 00 1456778776 569999863 14788864 4588999999
Q ss_pred HHHHHHHHH
Q 002941 843 LLKLYQRLE 851 (863)
Q Consensus 843 v~~L~~~l~ 851 (863)
+++|.+.++
T Consensus 404 ~~rL~~~~~ 412 (413)
T PLN00175 404 VERMKTKLK 412 (413)
T ss_pred HHHHHHHHh
Confidence 999988764
|
|
| >COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-14 Score=154.80 Aligned_cols=193 Identities=21% Similarity=0.228 Sum_probs=129.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc--cCCCCCCchhHHHhhccccccccCCCccccccc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSN 114 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
|++|||.+|++++|||.|++||+++|. ++|.+|+|||||. +|+..++....+......
T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~-----~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~~~--------------- 61 (354)
T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALE-----QKGLKVAYFKPIGTRTGKDADDLTEEDIRATSS--------------- 61 (354)
T ss_pred cceEEEeccCCCccHHHHHHHHHHHHH-----HcCceeEEEeccccccCCccchhHHHHHHHhhh---------------
Confidence 678999999999999999999999999 9999999999997 555444333322222100
Q ss_pred hhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCCh
Q 002941 115 SILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGD 194 (863)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~ 194 (863)
.+.+. .+..+..+..-.... ..+..+
T Consensus 62 -----------------~l~~~---------------------------------~~~~~~~ae~L~~~~----~~d~l~ 87 (354)
T COG0857 62 -----------------SLTYA---------------------------------EPLVLSFAEVLLSTG----QDDVLL 87 (354)
T ss_pred -----------------hcccC---------------------------------cccchhhHHHHhccc----cchHHH
Confidence 00010 011111111111111 123456
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCC----CCCcHhHHhhhcCCCEEEEECCCCCcHHHHH--
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP----SGSLQCDLYRPFRLPGILVGDGRLGGISGTI-- 268 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~----~~~~~~dla~~l~~pvilV~~~~~g~i~~~~-- 268 (863)
+++.+.|.++.+.+ |++++|| ..|.- ....|..||+.|+++++||++..+-+..+..
T Consensus 88 e~i~~~y~e~~~~~-------------~~vv~~g----~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~~~~ 150 (354)
T COG0857 88 EEILANYAELAKDA-------------DVVVVEG----DVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYELKSR 150 (354)
T ss_pred HHHHHHHHHHhccC-------------ceEEecc----ceeccccCccccccHHHHhhcCcchhhccccccCChhhhhhH
Confidence 78888888876654 9999999 55532 5678999999999999999998877654444
Q ss_pred --HHHHHHHhCCCcEEEEEEcCCCCC----CHHHHHHhhcC-CCCeee-cCCCCCCCchh
Q 002941 269 --SAYESLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRN-RVPVLV-LPPLPQDSSND 320 (863)
Q Consensus 269 --~~~~~~~~~~~~v~gvi~n~~~~~----~~~~~~~~~~~-~~pvl~-~p~~~~~~~~~ 320 (863)
....++...+.++.|||+|+...+ ....+.+++++ ++.+++ +|..+-+.+..
T Consensus 151 i~~~~~~~~~~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~ 210 (354)
T COG0857 151 VELALAAFGAAGNNLAGVVINNAPVDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSP 210 (354)
T ss_pred HHHHHHHhcccCCceEEEEecCCChhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCc
Confidence 444555545568999999966322 34456666655 688888 88877776543
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-12 Score=141.56 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=131.2
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|. +++.+.+++|.++|++||+++|+||++.+|....... ...+..++++ +|||.+| .| +
T Consensus 128 ~v~i~~p--~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~i~~~S~SK~~g~~G-~ 201 (330)
T TIGR01140 128 VLVLCNP--NNPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLA--PQAARFPGLVVLRSLTKFFGLAG-L 201 (330)
T ss_pred EEEEeCC--CCCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchh--hHhccCCCEEEEEecchhhcCch-h
Confidence 5667778 678885 4588899999999999999999999998774321111 1122223444 7899998 77 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
++|++++++++++.+... ..++..++++++++.+.|+ ++++.++++++.+..++.+ .+.+++++.
T Consensus 202 R~G~i~~~~~~~~~l~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l----~~~L~~~~~ 266 (330)
T TIGR01140 202 RLGFVVAHPALLARLREA--------LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARL----AALLARLGG 266 (330)
T ss_pred hhhheeCCHHHHHHHHhc--------CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHH----HHHHHhCCC
Confidence 999999999999988742 2345667777777766665 5566666666666666544 344556664
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+....+.|.++.+.+.. ..++++.|.++||++.|.. +.+|+.. ....++ +.++++|
T Consensus 267 ~~~~~~~~~f~~~~~~~-----------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~-~~~~~~l 329 (330)
T TIGR01140 267 LEVVGGTALFLLVRTPD-----------AAALHEALARRGILIRDFDNFPGLDPRYLRFAL--PTDEEN-DRLEEAL 329 (330)
T ss_pred ceECCCCCeEEEEEcCC-----------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEe--cCHHHH-HHHHHhh
Confidence 44345567777776542 3578899999999998741 5788863 333344 6666655
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=141.33 Aligned_cols=357 Identities=12% Similarity=0.057 Sum_probs=216.5
Q ss_pred CCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCC-CCcHHHHHHHHHHHHhccccc----CCCCCChHHH
Q 002941 372 PEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVM----FPENVYEPAL 446 (863)
Q Consensus 372 ~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh-~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~ 446 (863)
+..-+.++++.+-...|-|--.|.+. +.|.+.| =|++|. +++-...+++.+.++++++.. .-.+.++.+.
T Consensus 111 PG~~v~l~dR~S~D~n~tfk~tG~~~--~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hk 185 (519)
T KOG1357|consen 111 PGAWVDLMDRVSDDYNWTFKYTGTRS--RCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHK 185 (519)
T ss_pred CCceEEeeeeeccCCCceEEecccee--eeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHH
Confidence 44445566665555555565555521 2333322 234443 144455666677777877653 1125678899
Q ss_pred HHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee
Q 002941 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (863)
Q Consensus 447 eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~ 526 (863)
++++..+++++.+ ..+.+..|..+|..-+-..+ + +...|..+.-.|++......+
T Consensus 186 elE~l~A~f~g~e---~a~vF~mGf~TNs~~~p~l~-----------~-----------~gsLIiSDelNHaSi~~GaRL 240 (519)
T KOG1357|consen 186 ELEELVARFLGVE---DAIVFSMGFATNSMNIPSLL-----------G-----------KGSLIISDELNHASLITGARL 240 (519)
T ss_pred HHHHHHHHhcCCc---ceEEEeccccccccCcceee-----------c-----------CCcceeeccccchheeccccc
Confidence 9999999999863 45545567776665544331 2 134666777789988777766
Q ss_pred cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHH
Q 002941 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (863)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~ 606 (863)
+|.... . |+| || ...||+
T Consensus 241 SgAtiR--V--------------------------------fkH--------------------Nd--------m~~LEr 258 (519)
T KOG1357|consen 241 SGATTR--V--------------------------------FRH--------------------ND--------MQGLER 258 (519)
T ss_pred cCceEE--E--------------------------------Eec--------------------CC--------HHHHHH
Confidence 652210 0 000 22 123444
Q ss_pred HHhcCC----CCC-CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcC
Q 002941 607 NLLQNP----GLK-VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLG 679 (863)
Q Consensus 607 ~l~~~i----~~~-~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~g 679 (863)
.|.+.| -+. .+.+...||+|.+ .++.|.++- |+++.++|+||.+.|++||+|+ ..|++| .+.++++|
T Consensus 259 ~Lrd~I~~gqP~Thrp~kki~iivegi-ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG-rgvce~~g 332 (519)
T KOG1357|consen 259 LLRDAIVYGQPKTHRPWKKILICVEGI-YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG-RGVCEYFG 332 (519)
T ss_pred HHHHHHhcCCCCcCCcchheeeeeccc-eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC-cceeeccC
Confidence 454432 122 2557788999997 999999998 7788899999999999999997 223444 45788888
Q ss_pred CCC---cEE--EeccccC--CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh-----
Q 002941 680 CVP---DIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ----- 747 (863)
Q Consensus 680 v~P---Div--t~sKgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~----- 747 (863)
+.| ||+ ||-|+.+ ||| +.+++++.+.+...+. .+-+....+|..+...+.+++++..++
T Consensus 333 ~d~~dvDImMGtftKSfga~GGy-----iagsk~lid~lrt~s~----~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g 403 (519)
T KOG1357|consen 333 VDPEDVDIMMGTFTKSFGAAGGY-----IAGSKELIDYLRTPSP----SALYATSLSPPVAQQILTSVKHIMGEDGTNRG 403 (519)
T ss_pred CCchhheeecceehhhcccccce-----ecCcHHHHhhhccCCC----ceeecccCChHHHHHHHHHHHhhcCCCcccHH
Confidence 865 554 8889775 565 8999999999876431 233334467888888889999886422
Q ss_pred --hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--
Q 002941 748 --TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-- 823 (863)
Q Consensus 748 --l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-- 823 (863)
-.+++.++..+++..++ +...+..=......+.+-+- .......+.+.|+++++-+...|
T Consensus 404 ~~k~~~l~~ns~yfr~~l~--------~~gfivyG~~dSpVvplll~--------~~~k~~~f~r~~l~~nigvVvvgfP 467 (519)
T KOG1357|consen 404 RQKIERLAENSRYFRWELQ--------KMGFIVYGNNDSPVVPLLLY--------GPAKIVAFSREMLERNIGVVVVGFP 467 (519)
T ss_pred HHHHHHHHhhhHHHHHhhh--------cCcEEEecCCCCCcceeeec--------CcccccHHHHHHHhcCceEEEEeCC
Confidence 23444444444443221 11111000000011111111 11235567888988876554222
Q ss_pred ------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 ------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 ------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+.||..+..++.|++|++++.+++.=+
T Consensus 468 atpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 468 ATPLLESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred CchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 4667887888999999999988876543
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=141.37 Aligned_cols=215 Identities=12% Similarity=0.062 Sum_probs=139.4
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCc----EEEeccccC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD----IACYGKLLT 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PD----ivt~sKgLg 692 (863)
+....+++.| ++..|... +.+.+++|.++|++||+++|+||++..|...+..+. ...+.-.+| +-+|||.++
T Consensus 165 ~~~~v~l~~P--~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~ 241 (405)
T PRK09148 165 KPIALIVNYP--SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFS 241 (405)
T ss_pred cceEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccC
Confidence 3456666778 78888555 788899999999999999999999987632232211 111211133 237899998
Q ss_pred -CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
-| +.+|++++++++++.+..- ....+++.++++..++.+.|+- .+++.+++++..+..++.+.+. +
T Consensus 242 ~pG-lR~G~~v~~~~~i~~l~~~------~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~----L 308 (405)
T PRK09148 242 MAG-WRMGFAVGNERLIAALTRV------KSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVES----F 308 (405)
T ss_pred Ccc-hheeeeeCCHHHHHHHHHH------HHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHH----H
Confidence 78 8999999999999988641 1223455567777777776652 2344555555555555544333 3
Q ss_pred hcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHH
Q 002941 772 SSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 772 ~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~ 842 (863)
.+++. ... ..-|+++.+++.... . .....+++..|+ ++||.+.|+ .+.+|+.. ..+++.+.++
T Consensus 309 ~~~~~-~~~~p~~g~f~~~~l~~~~-~----~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~--~~~~~~l~~a 380 (405)
T PRK09148 309 GRAGW-DIPPPAASMFAWAPIPEAF-R----HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL--VENEQRIRQA 380 (405)
T ss_pred HHcCC-ccCCCCeeEEEEEECCCcc-C----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHH
Confidence 33332 222 234667777775321 0 001356777766 689999874 25788864 3678999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 843 LLKLYQRLEEFDKV 856 (863)
Q Consensus 843 v~~L~~~l~~l~~~ 856 (863)
+++|.+++....+-
T Consensus 381 l~~l~~~l~~~~~~ 394 (405)
T PRK09148 381 ARNIKRFLSSADET 394 (405)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-11 Score=136.95 Aligned_cols=321 Identities=15% Similarity=0.165 Sum_probs=198.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .+.+|. .|.+.+++.+.+..+.. ++.+...+|-++++++.+-. .+.++++++++++...+++
T Consensus 20 ~~~~l~~~--~~~~~~--p~~~~~a~~~~~~~~~~-----Y~~~~~~~lr~~ia~~~~~~-~~~i~it~Ga~~~l~~~~~ 89 (354)
T PRK06358 20 MILDFSAN--INPLGV--PESLKQAITENLDKLVE-----YPDPDYLELRKRIASFEQLD-LENVILGNGATELIFNIVK 89 (354)
T ss_pred ceEEecCC--CCCCCC--CHHHHHHHHHHHHhhhc-----CCCccHHHHHHHHHHHhCCC-hhhEEECCCHHHHHHHHHH
Confidence 46887653 345564 68999999987765432 22223456777888776543 4689999999999988776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . + .+|+...-+|+.....+...+.
T Consensus 90 ~~-~----------~------------~~v~i~~P~y~~~~~~~~~~g~------------------------------- 115 (354)
T PRK06358 90 VT-K----------P------------KKVLILAPTFAEYERALKAFDA------------------------------- 115 (354)
T ss_pred Hh-C----------C------------CcEEEecCChHHHHHHHHHcCC-------------------------------
Confidence 43 1 1 3588888888766433221110
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|... ...|. -| ..+.+.+. .+.-+.+++.| ++..|.. .+
T Consensus 116 ~~~~~~~~~---------------~~~~~--~d---------~~~~~~~~-------~~~~~v~~~~P--~NPtG~~-~~ 159 (354)
T PRK06358 116 EIEYAELTE---------------ETNFA--AN---------EIVLEEIK-------EEIDLVFLCNP--NNPTGQL-IS 159 (354)
T ss_pred eeEEEeCcc---------------ccCCC--cc---------HHHHHhhc-------cCCCEEEEeCC--CCCCCCc-cC
Confidence 001111000 00000 00 01111221 12233467889 7888865 47
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-CCCCCceeeec-cHHHHHhhhc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLA-TNAVFDSFVG 713 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~-~~~i~~~l~~ 713 (863)
.+-+++|.++|++||+++|+||++..|-..+.. -.....+-.+.++ +|||.++ .| +++|++++ ++.+++.+..
T Consensus 160 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~ 238 (354)
T PRK06358 160 KEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQ 238 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHH
Confidence 888999999999999999999999877433321 1112222234444 6799998 88 89999987 4778777764
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~ 793 (863)
- ...+..+.++..++.++|+ ++++.++..+..+..++. +.+.+.+++.+.-....|.++.+.+.+
T Consensus 239 ~--------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~----l~~~L~~~~~~~~~~~~g~f~~~~~~~ 303 (354)
T PRK06358 239 M--------REPWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDF----LYNGLSEFKGIKVYKPSVNFIFFKLEK 303 (354)
T ss_pred h--------CCCCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHH----HHHHHhcCCCcEEcCCcceEEEEEcCc
Confidence 1 1245567777777777664 444444444443444443 344455555444345667777776642
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEec----C---CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPL----G---NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g---~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++++.|.++||.+++. + +.+|+. ..++++.++++++|++.+
T Consensus 304 -----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 304 -----------PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL 353 (354)
T ss_pred -----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 246888999999999974 1 468886 678899999999998765
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-12 Score=140.37 Aligned_cols=195 Identities=15% Similarity=0.180 Sum_probs=131.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-C
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-g 693 (863)
+.++..| ++..|.+.+ .+++.++|++ +|+++|+||++..|...+.. .....+...++++ +|||.++ .
T Consensus 148 ~v~l~~p--~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 148 LIFVCNP--NNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred EEEEeCC--CCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 4445555 788998775 3455555555 69999999999877544432 2233333346666 5799998 6
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +++|++++++++++.+... ..+++.++++++++.++|+. .+.+.+++.+..+ .++.+ .+.+.+
T Consensus 222 G-lRiG~~v~~~~~~~~~~~~--------~~~~~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~-~r~~~----~~~L~~ 285 (352)
T PRK03321 222 G-LRVGYAVGHPEVIAALRKV--------AVPFSVNSLAQAAAIASLAA--EDELLERVDAVVA-ERDRV----RAALRA 285 (352)
T ss_pred H-HhhhhhcCCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHH-HHHHH----HHHHHH
Confidence 7 8999999999999988741 24567788999888888862 2333343333322 22223 333443
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+. ......|.++.+.+... ...+.+.|.++||++.+.+ +.+|+. ..+++++++++++|++++.
T Consensus 286 ~~~-~~~~~~g~~i~i~l~~~----------~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 286 AGW-TVPPSQANFVWLPLGER----------TADFAAAAAEAGVVVRPFAGEGVRVT---IGAPEENDAFLRAARAWRA 350 (352)
T ss_pred CCC-ccCCCCCCEEEEeCCCC----------HHHHHHHHHHCCEEEEccCCCcEEEe---eCCHHHHHHHHHHHHHHhc
Confidence 332 22334588888876421 4578889999999999875 578987 5789999999999988754
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-11 Score=138.18 Aligned_cols=317 Identities=14% Similarity=0.177 Sum_probs=194.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+..+ .+.++ -.|.+.+++.+.+..... |+..-..+|.+.++++.+-. .+.+++++++++|+..+++
T Consensus 31 ~~i~l~~~--~~~~~--~~~~~~~~~~~~~~~~~~-----Y~~~~~~~lr~~ia~~~~~~-~~~I~it~G~~~al~~~~~ 100 (357)
T PRK14809 31 DLVKLSSN--ENPHG--PSPAAVEAIREAAERVHS-----YPKASHADLTAALADRWDVS-PEQVWLANGGDGALDYLAR 100 (357)
T ss_pred ceeEecCC--CCCCC--CCHHHHHHHHHHHhhhhc-----CCCCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 67777753 23455 468899998887764321 22222456777777776543 4689999999999988887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|+..+-+|......+... +. ++
T Consensus 101 ~~~~---------~g------------d~V~v~~P~y~~~~~~~~~~-g~----------------------------~~ 130 (357)
T PRK14809 101 AMLD---------PG------------DTVLVPDPGFAYYGMSARYH-HG----------------------------EV 130 (357)
T ss_pred HhcC---------CC------------CEEEEeCCChHHHHHHHHHc-CC----------------------------eE
Confidence 6521 12 46888888775332211110 00 01
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++.+.. +.+. .+ .+.+++.. .+.-+.+++.| ++..|... +
T Consensus 131 ~~~~l~~~-----------------~~~~--~~--------~~~~~~~~--------~~~k~i~l~~p--~NPTG~~~-s 172 (357)
T PRK14809 131 REYPVSKA-----------------DDFE--QT--------ADTVLDAY--------DGERIVYLTSP--HNPTGSEI-P 172 (357)
T ss_pred EEEecccC-----------------cCCC--cC--------HHHHHHhh--------cCCcEEEEeCC--CCCCCcCC-C
Confidence 11111100 0000 01 11222222 11234556666 89999766 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE---EEeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+-+.+|.++|++ ++++|.||++..|...+.... .....+.+ -+|||.++ .| +.+|++++++++++.+...
T Consensus 173 ~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~--~~~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~- 247 (357)
T PRK14809 173 LDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVA--LVEERDDVAVLRTFSKAYGLAG-LRLGYAVVPEEWADAYARV- 247 (357)
T ss_pred HHHHHHHHHhCcc-CcEEEEechhhhccCCchhHH--HHhhCCCEEEEecchhHhcCcc-hhheeeecCHHHHHHHHHh-
Confidence 5567777777765 789999999988854333211 11112233 37899997 78 8999999999999888641
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+++.+++++.++.++|+ ++++.++..+..+..++.+.+ .+... .....|+++.+++.+
T Consensus 248 -------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~----~L~~~----~~~~~g~f~~~~~~~-- 307 (357)
T PRK14809 248 -------NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIRE----ELDAP----TWESAGNFVLAEVGD-- 307 (357)
T ss_pred -------CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH----HhcCc----cCCCCCCEEEEECCC--
Confidence 2356678888888887774 455666666555555554433 33322 124567888887631
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..++.+.|.++||+++++. +.+|+. ..+++++++++++|.++++
T Consensus 308 ---------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls---~~~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 308 ---------ASAVAEAAQERGVIVRDCTSFGLPECIRIT---CGTREETERAVEVLNEVLA 356 (357)
T ss_pred ---------HHHHHHHHHHCCEEEEECccCCCCCeEEEe---cCCHHHHHHHHHHHHHHhc
Confidence 3467788899999999752 678886 2357899999999987763
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-11 Score=138.52 Aligned_cols=206 Identities=18% Similarity=0.179 Sum_probs=133.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc-CCCCcEE---EeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCVPDIA---CYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~-gv~PDiv---t~sKgLg-gG 694 (863)
+.+++.| ++..|. +.+.+.+++|.++|+++|+++|+||++.+|...|.. .....+ +..+.++ +|||.++ .|
T Consensus 165 ~v~i~~p--~NPtG~-~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G 241 (397)
T PRK07568 165 AILISNP--GNPTGV-VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACG 241 (397)
T ss_pred EEEEECC--CCCCCc-cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCC
Confidence 4455677 678885 456777999999999999999999999988655532 122122 2234454 6799998 48
Q ss_pred CCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+++|+++++ +++++.+... ...+++.++++..++.++|+. .+++.+++++..+..++.+ .+.+++
T Consensus 242 -~R~G~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~~ 307 (397)
T PRK07568 242 -ARIGCLISKNKELIAAAMKL-------CQARLSPPTLEQIGAAALLDT--PESYFDEVREEYKKRRDIL----YEELNK 307 (397)
T ss_pred -cceEEEecCCHHHHHHHHHH-------hhccCCCCcHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHH----HHHHhc
Confidence 899999984 7888776431 112355677777777776653 2334444444444444433 334445
Q ss_pred CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHH------CCcEEEec----------CCEEEEecCCCCcH
Q 002941 774 HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRE------DGVYMRPL----------GNVIYLMCGPCSSP 836 (863)
Q Consensus 774 ~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e------~GV~~~p~----------g~~lr~~ppl~~t~ 836 (863)
++.+......| +++.+.+.... ...+.+.|.+ +||++.|+ .+.+|++ ++.++
T Consensus 308 ~~~~~~~~p~g~~~~~~~l~~~~---------~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls--~~~~~ 376 (397)
T PRK07568 308 IPGVVCEKPKGAFYIIAKLPVDD---------AEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIA--YVLNE 376 (397)
T ss_pred CCCceecCCCcceEEEEecCCCC---------HHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEE--EeCCH
Confidence 55444344445 45566664321 4456676764 69999872 1478886 34678
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
+++++++++|.++++++.
T Consensus 377 ~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 377 EDLKRAMEILKEALEKYN 394 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999887654
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-11 Score=135.98 Aligned_cols=340 Identities=11% Similarity=-0.020 Sum_probs=197.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC------CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|||..+ .|. -.+.|.+|+.+.+.+.......+. ..+...++.++|+++++....+.++|+++++++
T Consensus 25 iYld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 25 AYLDSAA------SAQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred EEEeCcc------ccc-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 6888554 222 457888998887765321110111 123455777888888874213689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++....... . . ..+||+....||+.......+.. ..+.
T Consensus 98 l~~~~~~~~~~~~-~----~------------gd~vl~~~~~~~s~~~~~~~~~~--------------~~g~------- 139 (406)
T PRK09295 98 INLVANSWGNSNV-R----A------------GDNIIISEMEHHANIVPWQMLCA--------------RVGA------- 139 (406)
T ss_pred HHHHHHHhhhhcC-C----C------------cCEEEECcchhhHHHHHHHHHHH--------------HcCc-------
Confidence 9888765310000 0 1 15688887777764221111100 0000
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+... .-| .+.+++.+. + ++..|++.-+ ++..
T Consensus 140 ----~v~~v~~~~~~---------------------~~d--------~~~l~~~i~-------~-~t~lv~l~~~-~n~t 177 (406)
T PRK09295 140 ----ELRVIPLNPDG---------------------TLQ--------LETLPALFD-------E-RTRLLAITHV-SNVL 177 (406)
T ss_pred ----EEEEEecCCCC---------------------CCC--------HHHHHHhcC-------C-CcEEEEEecc-hhcc
Confidence 01111111000 001 234444442 2 3445555554 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++| ++|..- ...+. ..+|++++| |.+| . .-+|++++++++.+.+
T Consensus 178 G~~~~----~~~i~~~~~~~~~~vivD~a~-~~g~~~--~~~~~--~~~D~~~~s~~K~~g-p-~G~G~l~~~~~~~~~~ 246 (406)
T PRK09295 178 GTENP----LAEMIALAHQHGAKVLVDGAQ-AVMHHP--VDVQA--LDCDFYVFSGHKLYG-P-TGIGILYVKEALLQEM 246 (406)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEccc-ccCccc--cCchh--cCCCEEEeehhhccC-C-CCcEEEEEchHhHhhC
Confidence 98887 899999999999999999999 455431 22222 347998876 9444 2 2368888999887765
Q ss_pred hcCCcc----ce--eecc----------cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 712 VGDSKL----KA--LLHG----------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 712 ~~~~~~----~~--~~~~----------~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
...... .. .... -+-+.|..++++..++++++.+.+ .+++++..+.+.+++.+. +.+.+
T Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~----l~~~~ 321 (406)
T PRK09295 247 PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALG-LNNIAEYEQNLMHYALSQ----LESVP 321 (406)
T ss_pred CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH----HhcCC
Confidence 321000 00 0000 111457778889999999886543 245556666666655433 34444
Q ss_pred CeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHH
Q 002941 776 TVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 776 ~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid 840 (863)
.+.-+. ..+.++.+.+.... ...+.+.|.++||.++.. ...+|+++....|++|||
T Consensus 322 ~~~~~~~~~~~~iv~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did 392 (406)
T PRK09295 322 DLTLYGPQNRLGVIAFNLGKHH---------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD 392 (406)
T ss_pred CEEEeCCCCCceEEEEEECCcC---------HHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHH
Confidence 332111 12446666654321 345777888999999742 147999999999999999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
.++++|++...
T Consensus 393 ~l~~~l~~i~~ 403 (406)
T PRK09295 393 RLVAGLQRIHR 403 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999987643
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-11 Score=139.71 Aligned_cols=334 Identities=11% Similarity=0.018 Sum_probs=193.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE~ 476 (863)
.++|+..|. ..++ -.+.+.+++.+.+.+..... ...+..+....+++.+....+.. .. +.+++++++++|...
T Consensus 33 ~~i~l~~g~--p~~~--~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 108 (399)
T PRK07681 33 KMIDLSIGN--PDMP--PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVH 108 (399)
T ss_pred CeEEeCCCC--CCCC--CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHH
Confidence 567776653 2244 36788888887765422111 01223344555666665432211 12 579999999999888
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++...+ .| ..|+...-+|.+....+...+
T Consensus 109 ~~~~~~~---------~G------------d~Vlv~~P~y~~~~~~~~~~G----------------------------- 138 (399)
T PRK07681 109 LPMVYAN---------PG------------DIILVPDPGYTAYETGIQMAG----------------------------- 138 (399)
T ss_pred HHHHhCC---------CC------------CEEEECCCCccchHHHHHhcC-----------------------------
Confidence 7765421 12 568888888876543322211
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|-.. +..|. -| .+.+++.+. +..-+.+++.| ++..|.+
T Consensus 139 --~~~~~v~~~~---------------~~~~~--~d--------~~~l~~~~~-------~~~k~v~l~~P--~NPTG~~ 182 (399)
T PRK07681 139 --ATSYYMPLKK---------------ENDFL--PD--------LELIPEEIA-------DKAKMMILNFP--GNPVPAM 182 (399)
T ss_pred --CEEEEEecCC---------------CCCCc--CC--------HHHHHHhcc-------ccceEEEEeCC--CCCcCcC
Confidence 1111122000 00000 01 123333332 12234455568 7899965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc----EEEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD----ivt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
. +++-+++|.++|++||+++|.||++..|-..+... ....+.-.+| +-+|||.++ .| +.+|++++++++++.
T Consensus 183 ~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~ 260 (399)
T PRK07681 183 A-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRA 260 (399)
T ss_pred C-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHH
Confidence 5 67889999999999999999999998773333211 1111111122 237899997 78 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~i 789 (863)
+... ....+++.+.++..++.+.|+. ...+.++.++..+..++.+ .+.+.+++ +.-. ..-|.++.+
T Consensus 261 ~~~~------~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~~~g-~~~~~p~~g~f~~~ 327 (399)
T PRK07681 261 LTQF------KSNTDYGVFLPIQKAACAALRN--GAAFCEKNRGIYQERRDTL----VDGFRTFG-WNVDKPAGSMFVWA 327 (399)
T ss_pred HHHH------HhhcccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH----HHHHHHCC-CcccCCCeeeEEEE
Confidence 7641 1123455667777777776652 1234444444444444433 33344443 2222 233677777
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.+.. ...+++..+++ +||++.|+ .+.+|+.. ..+++++++++++|.+
T Consensus 328 ~l~~~~--------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 328 EIPKGW--------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIAL--VQDEEVLQQAVENIRN 384 (399)
T ss_pred ECCCCC--------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence 775321 24568888877 89999873 14688753 4678999999999987
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-11 Score=137.25 Aligned_cols=320 Identities=13% Similarity=0.078 Sum_probs=195.2
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WA 461 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~ 461 (863)
+.|.+.+...|+ ..+|+..+ .+.+|. .|.+++++.+.+..-.+. .|+.+...+|.+.++++.+.. ..
T Consensus 8 ~~~~~~~~~~~~----~~i~l~~~--~~~~~~--p~~~~~~~~~~~~~~~~~---~Y~~~~~~~Lr~aia~~~~~~~~~~ 76 (335)
T PRK14808 8 AKRAYPYETEKR----DRTYLALN--ENPFPF--PEDLVDEVFRRLNSDTLR---IYYDSPDEELIEKILSYLDTDFLSK 76 (335)
T ss_pred hccCcCCCCCCC----ceeEecCC--CCCCCC--CHHHHHHHHHHhhhhhhh---cCCCCChHHHHHHHHHHhCCCCCCc
Confidence 344455555665 77887653 456664 689999998876431111 122234556777777766521 13
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcc
Q 002941 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (863)
Q Consensus 462 ~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~ 541 (863)
+.|++++++++++..+++.. ..|++.+-+|.+....+...+.
T Consensus 77 ~~i~it~Ga~~~i~~~~~~~-------------------------d~v~v~~P~y~~~~~~~~~~g~------------- 118 (335)
T PRK14808 77 NNVSVGNGADEIIYVMMLMF-------------------------DRSVFFPPTYSCYRIFAKAVGA------------- 118 (335)
T ss_pred ceEEEcCCHHHHHHHHHHHh-------------------------CcEEECCCCHHHHHHHHHHcCC-------------
Confidence 67999999999998887533 2478888888776443332211
Q ss_pred cCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 002941 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (863)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA 621 (863)
..+++|... .+. .+ + ..+. ....
T Consensus 119 ------------------~~~~v~~~~-----------------~~~--~~---------~---~~~~--------~~~~ 141 (335)
T PRK14808 119 ------------------KFLEVPLTK-----------------DLR--IP---------E---VNVG--------EGDV 141 (335)
T ss_pred ------------------eEEEecCCC-----------------cCC--CC---------h---hHcc--------CCCE
Confidence 011112000 000 00 0 0111 1345
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~P 697 (863)
.++..| ++..|...+ .+ ++.+++ ++++++|.||++..|. +..+. ....-.+.++ +|||.++ .| +.
T Consensus 142 i~i~nP--~NPTG~~~s-~~---~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~-~~~~~~~~vi~~~S~SK~~~l~G-lR 210 (335)
T PRK14808 142 VFIPNP--NNPTGHVFE-RE---EIERIL-KTGAFVALDEAYYEFH--GESYV-DLLKKYENLAVIRTFSKAFSLAA-QR 210 (335)
T ss_pred EEEeCC--CCCCCCCcC-HH---HHHHHH-hcCCEEEEECchhhhc--CCchH-HHHHhCCCEEEEEechhhccCcc-cc
Confidence 678888 789997775 44 444555 5899999999998873 22111 1111123444 6899998 78 89
Q ss_pred ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
+|++++++++++.+... . .+++.++++..++.++++. .++..+..+.....++.+ .+.+.+.+ +
T Consensus 211 vG~~v~~~~~~~~l~~~-------~-~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~r~~l----~~~L~~~g-~ 274 (335)
T PRK14808 211 IGYVVSSEKFIDAYNRV-------R-LPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERM----KSALREMG-Y 274 (335)
T ss_pred eEEEEeCHHHHHHHHHh-------c-CCCCCCHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH----HHHHHHCC-C
Confidence 99999999999988641 1 2355677777777777762 223222222222223333 33444444 3
Q ss_pred eEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 778 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 778 ~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.-..+.|.++.+.+.... ...+.+.|.++||+++...+.+|++ +.+.++.++++++|++
T Consensus 275 ~~~~~~g~f~~~~l~~~~---------~~~~~~~l~~~Gi~V~~~~~~~Ris---i~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 275 RITDSRGNFVFIFMEKEE---------KERLLEHLRAKNIAVRSFREGVRIT---IGKREENDMILKELEV 333 (335)
T ss_pred EECCCCCeEEEEeCCCcc---------HHHHHHHHHHCCeEEEECCCCeEEe---cCCHHHHHHHHHHHHh
Confidence 334567888888876332 3568889999999999887889987 6678899999988864
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=137.95 Aligned_cols=215 Identities=18% Similarity=0.153 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-c-h-hhh
Q 002941 602 SYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-T-T-ADL 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~-~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~-a-~e~ 677 (863)
+.+++.+++. ...+ ++.++++... +++.|.. .+.+.+++|.++|++||+++|+||++..+ ..+.. + . ...
T Consensus 133 ~~l~~~l~~~---~~~~~~~~~v~~~~p-~nPtG~~-~~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~ 206 (363)
T PF00155_consen 133 EALEEALDEL---PSKGPRPKAVLICNP-NNPTGSV-LSLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSL 206 (363)
T ss_dssp HHHHHHHHTS---HTTTETEEEEEEESS-BTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGH
T ss_pred cccccccccc---cccccccceeeeccc-ccccccc-cccccccchhhhhcccccceeeeeceecc-ccCCCccCccccc
Confidence 4566666541 1112 3455556554 8888864 47888999999999999999999999776 44432 1 1 222
Q ss_pred cCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhH
Q 002941 678 LGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNI 752 (863)
Q Consensus 678 ~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l 752 (863)
..-.++++ ++||++| -| +++|++++++++++.+.. ...++..+.+.++++.+.+.--.. .++.++.
T Consensus 207 ~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (363)
T PF00155_consen 207 LDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRR--------FQRSGLSSSPMQAAAAAALSDPELVEKWLEEL 277 (363)
T ss_dssp HTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHH--------HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeeeeccccccccc-cccccccchhhhhhhhhh--------ccccccccchhhHHHHHhhhcccccccccccc
Confidence 33344533 6799997 67 899999999999998874 222333366666666666553221 1133344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCE
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNV 825 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~ 825 (863)
.+..+..++.+ .+.+.+... ..... -|.++.+.+... ...++++.|+++ ||.+.|. .+.
T Consensus 278 ~~~l~~~~~~l----~~~L~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~pg~~~~~~~~ 343 (363)
T PF00155_consen 278 RERLRENRDLL----REALEEIGI-TVLPPEAGFFLWVRLDPN---------DAEELAQELLEEYGILVRPGSYFGVPGY 343 (363)
T ss_dssp HHHHHHHHHHH----HHHHHHTTS-EEEHHSBSSEEEEEESHH---------HHHHHHHHHHHHHTEEEEEGGGGTSTTE
T ss_pred hhhHHHHHHHH----HHHHHHhhh-heeeccCccEEEEEcccc---------hHHHHHHHHHHhCCEEEEecCCCCCCCE
Confidence 44444444433 333334432 23333 556666666532 357789999998 9999984 378
Q ss_pred EEEecCCCCcHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L 846 (863)
+|++. ..+++|++++++++|
T Consensus 344 iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 344 IRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp EEEEG-GCSCHHHHHHHHHHH
T ss_pred EEEEe-ccCCHHHHHHHHhhC
Confidence 99986 689999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-11 Score=131.98 Aligned_cols=223 Identities=16% Similarity=0.159 Sum_probs=151.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-CcchhhhcC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLLG- 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~~~a~e~~g- 679 (863)
+.||+.+.+ +....-++|.| ++.+| .++..+.|.+|.+||.+||+.+|.||||+-+--.| +.+.+....
T Consensus 148 ~~LE~~~~~------~~vkl~iLCnP--HNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~ 218 (388)
T COG1168 148 DALEKAFVD------ERVKLFILCNP--HNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSE 218 (388)
T ss_pred HHHHHHHhc------CCccEEEEeCC--CCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcCh
Confidence 678888863 33467889999 89988 78899999999999999999999999999986666 443333222
Q ss_pred -CCCcEEE-e--ccccC-CCCCCceeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 680 -CVPDIAC-Y--GKLLT-GGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 680 -v~PDivt-~--sKgLg-gG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
..-..+| + ||+.. .| +-.|.++ .++++...+... +......+.|.+++-|..++.+. .+.|++.+.
T Consensus 219 ~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~-----l~~~~~~~~n~lg~~A~~aAY~~--G~~WLd~L~ 290 (388)
T COG1168 219 RFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKR-----LKRNGLHGPSALGIIATEAAYNQ--GEPWLDELL 290 (388)
T ss_pred hhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHH-----HHHhcCCCCchHHHHHHHHHHHh--chHHHHHHH
Confidence 1112333 3 68774 45 5555554 566664444321 11234456788999999999884 677888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHH-------CCcEEEecC-C
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRE-------DGVYMRPLG-N 824 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e-------~GV~~~p~g-~ 824 (863)
+..+..++++.+.+. +..|.|.-....|+++. +++..-... ..++.+.|++ .|...++.| +
T Consensus 291 ~yl~~N~~~~~~~l~---~~~P~v~v~~p~gTYL~WLD~r~l~l~-------d~~l~~~ll~~akVal~~G~~FG~~g~g 360 (388)
T COG1168 291 EYLKDNRDYVADFLN---KHLPGVKVTEPQGTYLAWLDCRELGLD-------DSELAEFLLEEAKVALSPGSTFGEEGSG 360 (388)
T ss_pred HHHHHHHHHHHHHHH---hhCCCcEEecCCCceeeeeeccccCCC-------hHHHHHHHHHhhcEeccCCCccCcCCCc
Confidence 877777776654433 34588888888998666 777653311 1234444443 344444445 5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 825 VIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 825 ~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+|+ ++.++.+-+++++++|..+++.+
T Consensus 361 f~Rl--N~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 361 FVRL--NFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred eEEE--ecCCCHHHHHHHHHHHHHHHhcc
Confidence 6665 78899999999999999887653
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-11 Score=136.69 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=126.4
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-CCCCc-E--EEeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GCVPD-I--ACYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv~PD-i--vt~sKgLg-g 693 (863)
+.+|++... ++..|... +.+.+++|.++|++||+++|+||++.+|...+. ......+ +...+ + .+|||.++ .
T Consensus 160 ~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK07777 160 TRALIVNSP-HNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT 237 (387)
T ss_pred cEEEEEcCC-CCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc
Confidence 445555554 78888755 788899999999999999999999987743332 1122221 22222 2 26899998 6
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +++|++++++++++.+... ....++..+++...++..+++. .+.+.+.+++..+..++.+.+. +.+
T Consensus 238 G-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~----L~~ 304 (387)
T PRK07777 238 G-WKIGWACGPAPLIAAVRAA------KQYLTYVGGAPFQPAVAHALDH--EDAWVAALRDSLQAKRDRLAAG----LAE 304 (387)
T ss_pred C-ceeEEEecCHHHHHHHHHH------HhhcccCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 7 8999999999998877642 1223444444444444454542 2344445555444455544333 333
Q ss_pred CCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC----------CEEEEecCCCCcHHHHHH
Q 002941 774 HRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG----------NVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 774 ~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g----------~~lr~~ppl~~t~eeid~ 841 (863)
.. +.-.... |.++.+.+..... ..+..+++.|+ ++||++.|+. +.+|+.. ..+++++++
T Consensus 305 ~~-~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~ 375 (387)
T PRK07777 305 AG-FEVHDSAGTYFLCADPRPLGY------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDE 375 (387)
T ss_pred CC-CCccCCCcceEEEecccccCC------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHH
Confidence 32 1112233 4455566542110 02467888886 5799997631 3688754 457899999
Q ss_pred HHHHHHHHH
Q 002941 842 LLLKLYQRL 850 (863)
Q Consensus 842 ~v~~L~~~l 850 (863)
++++|.+..
T Consensus 376 ~l~~l~~~~ 384 (387)
T PRK07777 376 AIRRLRALR 384 (387)
T ss_pred HHHHHHHHh
Confidence 999887653
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-11 Score=135.60 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=129.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
..+++.| ++..|... +.+.+++|.++|+++|+++|.||++..+........ +.-.++++ +|||.+| .| +
T Consensus 127 ~v~l~nP--~NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~---~~~~~~vi~~~SfSK~~gl~G-l 199 (330)
T PRK05664 127 VLVVVNP--NNPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAA---CAHRPGLIVLRSFGKFFGLAG-A 199 (330)
T ss_pred EEEEeCC--cCCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccc---cccCCCEEEEeeccccccCCC-c
Confidence 5788999 68889755 667799999999999999999999976632112211 22134444 7899998 88 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ..++..+.++.+++.++|+ +..+.++.++..+..++.+. +.+.+++.
T Consensus 200 RiG~~v~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~~~~~r~~l~----~~L~~~~~ 264 (330)
T PRK05664 200 RLGFVLAEPALLRALAEL--------LGPWTVSGPTRWLAQAALA---DTPWQRRQRERLLAASQRLA----ALLRRHGL 264 (330)
T ss_pred ceEEEEeCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHH----HHHHHCCC
Confidence 999999999999988642 1244556777777777775 33333444444444444443 33344432
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
....|.+.++.+.+. + +..+.+.|.++||+++.++ +.+|++. ..++++.++++++|++..+
T Consensus 265 -~~~~~~~~f~~~~~~--~---------~~~~~~~l~~~gi~v~~f~~~~~iRis~--~~~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 265 -TPAGGCALFQWVRTE--D---------AAALHEFLARRGILTRLFEQPASLRFGL--PADEADWARLDQALLAYRK 327 (330)
T ss_pred -cccCCcceEEEEecC--C---------HHHHHHHHHHCCeEEEECCCCCeEEEEC--CCCHHHHHHHHHHHHHHHh
Confidence 112233355555442 2 4678889999999998764 7888863 3367888888888776544
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-11 Score=137.95 Aligned_cols=336 Identities=14% Similarity=0.055 Sum_probs=190.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
..+|+.++... +. -.+.+.+++.+.+..... +....+..+....+++.+.+..+.. ..+.+++++++++|+..
T Consensus 30 ~~i~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 105 (386)
T PRK07550 30 PLIDLSQAVPG--YP--PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWA 105 (386)
T ss_pred CeEEeCCCCCC--CC--CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 56777765533 22 257788888776643111 1111123344556777776543321 13579999988999888
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| .+|++-.-+|.+.... +...|
T Consensus 106 ~~~~l~~---------~g------------d~Vlv~~p~y~~~~~~-~~~~g---------------------------- 135 (386)
T PRK07550 106 AMVTLAG---------AG------------DEVILPLPWYFNHKMW-LDMLG---------------------------- 135 (386)
T ss_pred HHHHhcC---------CC------------CEEEEcCCCCcchHHH-HHhcC----------------------------
Confidence 7776521 12 4688777777554211 11100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|... +..+ ..| .+.+++.++. ...+.+++.| ++..|..
T Consensus 136 --~~~~~v~~~~---------------~~~~--~~~--------~~~l~~~~~~-------~~~~v~~~~P--~NPtG~~ 179 (386)
T PRK07550 136 --IRPVYLPCDE---------------GPGL--LPD--------PAAAEALITP-------RTRAIALVTP--NNPTGVV 179 (386)
T ss_pred --CEEEEEecCC---------------CcCC--CCC--------HHHHHHHhcc-------cCcEEEEeCC--CCCCCcc
Confidence 0111111000 0000 001 2345555531 2345566777 6788865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--c-chhhhcCCCCcE---EEeccccC-CCCCCceeeeccHHHHH
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--E-TTADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~-~a~e~~gv~PDi---vt~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
. +.+.+++|.++|++||+++|.||++..| +.+. . ..+...+...++ .+|||.++ .| +++|++++++++++
T Consensus 180 ~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~ 256 (386)
T PRK07550 180 Y-PPELLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIA 256 (386)
T ss_pred c-CHHHHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCCCccccEEEEecchhhccCcc-cceEeeecCHHHHH
Confidence 5 6889999999999999999999999877 3221 1 111111112223 37899998 77 89999999999988
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... ....+.+.+.++..++.+.|+.+ +++.+++++..+..++.+ .+.+.+++.+ .+... |.++.
T Consensus 257 ~~~~~------~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l----~~~L~~~~~~-~~~~~g~~~~~ 323 (386)
T PRK07550 257 EIEKF------MDTVAICAPRIGQIAVAWGLPNL--ADWRAGNRAEIARRRDAF----RAVFARLPGW-ELLASGAYFAY 323 (386)
T ss_pred HHHHH------HhhcccCCCcHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHH----HHHHHhCCCc-eeCCCceEEEE
Confidence 77641 22234455777777777666532 233333333333333322 3344444332 22333 45556
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+.... ..+.+++..|. ++||.+.|+ ++.+|++.. ..+++++++++++|.+.
T Consensus 324 ~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 324 VRHPFPD-------RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA-NADVAGIGELVERLRAF 384 (386)
T ss_pred ecCCCCC-------CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee-cCCHHHHHHHHHHHHhh
Confidence 6664311 02556777765 689999873 257888753 35789999999988764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-11 Score=134.43 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=133.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++.-+ ++..|.+.+ +++|.++|++||+++|+|++|. +|.. ..... ...+|++++ .|.+| . .
T Consensus 159 ~~~lv~~~~~-~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~g-p-~ 226 (403)
T TIGR01979 159 KTKLVAITHV-SNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALDCDFYVFSGHKMYG-P-T 226 (403)
T ss_pred CCeEEEEEcc-cccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcc--ccCCCEEEEecccccC-C-C
Confidence 3455666554 788898887 8999999999999999999994 4322 11122 234788755 59664 2 2
Q ss_pred CceeeeccHHHHHhhhcCC----cccee-e---------ccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDS----KLKAL-L---------HGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~----~~~~~-~---------~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~ 761 (863)
.+|++.+++++.+.+.... ..... . ..+ .-+.+..+++++.++++.+.+.+ .+++.++...+.+
T Consensus 227 G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g-~~~~~~~~~~l~~ 305 (403)
T TIGR01979 227 GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIG-LENIEAHEHELTA 305 (403)
T ss_pred CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 3788889988877654210 00000 0 000 01345667777788888875433 2355555566666
Q ss_pred HHHHHHHHHHhcCCCeeEec-----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------C
Q 002941 762 LWDLELIQQISSHRTVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------G 823 (863)
Q Consensus 762 ~l~~~l~~~~~~~p~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g 823 (863)
.+.+. ++..+.+.-+. ..+.++.+.+.... ..++.+.|.++||.+++. +
T Consensus 306 ~l~~~----l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~ 372 (403)
T TIGR01979 306 YALER----LGEIPGLRIYGPRDAEDRGGIISFNVEGVH---------PHDVGTILDEEGIAVRSGHHCAQPLMRRFGVP 372 (403)
T ss_pred HHHHH----HhcCCCEEEeCCCCccccCceEEEEeCCcC---------HHHHHHHHhhCCEEEcchhhhhHHHHHHhCCC
Confidence 55433 33344332221 23667777774321 346778889999998752 3
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+|++++..+|++|+++++++|+++++.+
T Consensus 373 ~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 373 ATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 679999998899999999999998877654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-11 Score=137.84 Aligned_cols=332 Identities=13% Similarity=0.090 Sum_probs=194.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-------CCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-------WASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-------~~~~v~f~~SGSe 472 (863)
+++|+.+|. ..++- .|.+.+++.+.+...... ..|+..-..+|-+.|+++++.. ..+.+++++++++
T Consensus 29 ~~~~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~--~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~ 102 (374)
T PRK02610 29 QLDRLDTNE--FPYDL--PPDLKQKLAWLYQQGIES--NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDE 102 (374)
T ss_pred ceeEecCCC--CCCCC--CHHHHHHHHHHHhhcccc--cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHH
Confidence 577777643 34553 689999999876652111 1122222345556666555411 1256999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|+..++..... .| ..+|++..-+|.+....+...+.
T Consensus 103 al~~~~~~~~~---------~g-----------~~~Vlv~~P~y~~~~~~~~~~g~------------------------ 138 (374)
T PRK02610 103 LIRSLLIATCL---------GG-----------EGSILVAEPTFSMYGILAQTLGI------------------------ 138 (374)
T ss_pred HHHHHHHHHcC---------CC-----------CCeEEEcCCChHHHHHHHHHcCC------------------------
Confidence 98877654311 11 13688888888765433222110
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEcccccc
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHA 631 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv-IvEPViqg 631 (863)
..+.+|... +.+. -| .+.+++.++. ....++.+| ++.| ++
T Consensus 139 -------~~~~~~~~~----------------~~~~--~d--------~~~l~~~~~~----~~~~~~k~i~l~~P--~N 179 (374)
T PRK02610 139 -------PVVRVGRDP----------------ETFE--ID--------LAAAQSAIEQ----TQNPPVRVVFVVHP--NS 179 (374)
T ss_pred -------EEEEecCCc----------------ccCC--CC--------HHHHHHHHHh----hcCCCceEEEEeCC--CC
Confidence 001111000 0000 01 1344455531 011244445 4556 89
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i 707 (863)
..|... +.+.++.+.++| +|+++|.||++..|..... .....-.++++ +|||.++ .| +++|++++++++
T Consensus 180 PTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~---~~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l 252 (374)
T PRK02610 180 PTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTL---VGELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPEL 252 (374)
T ss_pred CCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccch---HHHHhcCCCEEEEEecchhccCcc-cceeeeecCHHH
Confidence 999776 556678888887 4999999999987732111 11111124444 6899995 77 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~ 787 (863)
++.+.... ..++.+.++..++.++|+.. +.+.+++....+. ++ .+.+.+..++.+......|.++
T Consensus 253 ~~~l~~~~--------~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~----~l~~~L~~~~~~~~~p~~g~f~ 317 (374)
T PRK02610 253 IAVLEKVR--------LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RD----RLYQALQELPQLRVWPSAANFL 317 (374)
T ss_pred HHHHHHhc--------CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HH----HHHHHHHhCCCcEeCCCcceEE
Confidence 99886421 23445677777777766521 3334444433322 33 2334444555443334557777
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+.... ....+++.|.++||++++..+.+|+.. .+++++++++++|.++++.+
T Consensus 318 ~~~l~~~~--------~~~~~~~~l~~~gi~v~~~~~~lRls~---~~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 318 YLRLSQDA--------ALAALHQALKAQGTLVRHTGGGLRITI---GTPEENQRTLERLQAALTQL 372 (374)
T ss_pred EEeCCCCC--------CHHHHHHHHHHCCEEEEeCCCeEEEeC---CCHHHHHHHHHHHHHHHhhc
Confidence 77775321 246788889999999998778899862 34677899999998877654
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-11 Score=136.29 Aligned_cols=204 Identities=10% Similarity=0.039 Sum_probs=128.6
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHH
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i 707 (863)
.+..|++.+ +++|.++|++||+++|+|.++ ++|.. .+....+ .+|+++ +.|+|.|+ .-+|+++++++.
T Consensus 139 ~~~tG~~~~----i~~I~~l~~~~g~~livD~~~-~~g~~--~~~~~~~--~~D~~~~s~~K~l~~p-~G~G~l~~~~~~ 208 (363)
T TIGR02326 139 ETTTGILNP----IEAVAKLAHRHGKVTIVDAMS-SFGGI--PIDIAEL--HIDYLISSANKCIQGV-PGFGFVIARQAE 208 (363)
T ss_pred cCCccccCc----HHHHHHHHHHcCCEEEEEccc-cccCc--ccchhhc--CccEEEecCccccccC-CcceEEEECHHH
Confidence 455788876 799999999999999999998 46543 2223333 468775 47999765 446889999988
Q ss_pred HHhhhcCCccce---------e---ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 708 FDSFVGDSKLKA---------L---LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 708 ~~~l~~~~~~~~---------~---~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
++.+........ + .....|+.++.+..+..++++.+.++...++.+++.+.+++.+.+.+.+. ...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~ 286 (363)
T TIGR02326 209 LAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFE 286 (363)
T ss_pred HHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCe
Confidence 776542111000 0 00123456777888888888877544333445555555555554443322 111
Q ss_pred CeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+... ...+.+..+.+.... ......+.+.|.++||.+++. .+.+|+.+...++.+++++++++|++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 287 PLLDDEIQSPIITSFYSPEDP------DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred eccCcccCCceEEEEECCCCC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 11111 012344555554310 001456888999999999875 3789998655679999999999998876
Q ss_pred H
Q 002941 851 E 851 (863)
Q Consensus 851 ~ 851 (863)
.
T Consensus 361 ~ 361 (363)
T TIGR02326 361 Y 361 (363)
T ss_pred C
Confidence 3
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-11 Score=136.66 Aligned_cols=203 Identities=19% Similarity=0.173 Sum_probs=130.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEE---EeccccC-CCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIA---CYGKLLT-GGV 695 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDiv---t~sKgLg-gG~ 695 (863)
+.++..| ++..|... +.+.+++|.++|++||+++|.||++..|...+..-....+ +..+.++ +|||.++ .|
T Consensus 165 ~v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G- 240 (384)
T PRK06348 165 AIILNSP--NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG- 240 (384)
T ss_pred EEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCcc-
Confidence 4455667 78888655 7888999999999999999999999877332221111111 2223333 6899998 78
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+.+|++++++++.+.+..- ....+++.++++..++.++|+. .+.+.+++++..+..++.+. +.+...+
T Consensus 241 lRiG~~v~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~----~~L~~~~ 308 (384)
T PRK06348 241 WRIGYVIAPDYIIETAKII------NEGICFSAPTISQRAAIYALKH--RDTIVPLIKEEFQKRLEYAY----KRIESIP 308 (384)
T ss_pred ccceeeecCHHHHHHHHHH------HHhccCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHH----HHHhcCC
Confidence 8999999999998877631 2234567788888888887763 23344444444433334332 3333444
Q ss_pred CeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 776 TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 776 ~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+.-.... |.++.+++.... ....+++..|+ ++||.+.|+ .+.+|+.. ..+++++++++++|
T Consensus 309 ~~~~~~p~gg~~~~~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l 379 (384)
T PRK06348 309 NLSLHPPKGSIYAFINIKKTG-------LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRI 379 (384)
T ss_pred CceeccCCeeEEEEEecccCC-------CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHH
Confidence 33323343 455667775321 01456788776 579999863 25788864 46888888888887
Q ss_pred HH
Q 002941 847 YQ 848 (863)
Q Consensus 847 ~~ 848 (863)
.+
T Consensus 380 ~~ 381 (384)
T PRK06348 380 EK 381 (384)
T ss_pred Hh
Confidence 54
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-11 Score=138.96 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=129.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEE--EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|... +.+-+++|.++|++|++++|+||++..|...+. ......+....+++ ++||.++ .| +
T Consensus 169 ~v~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-l 244 (391)
T PRK08361 169 MIVINYP--NNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG-W 244 (391)
T ss_pred EEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH-h
Confidence 4455556 78888655 677889999999999999999999977632222 11111111122333 6799997 77 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ....+++.+.+...++.++|+.-...++.+++++..+..++.+ .+.+++.+.
T Consensus 245 RiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~~~~ 314 (391)
T PRK08361 245 RLGFVIAPEQVIKDMIKL------HAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLV----LKRLKEMPH 314 (391)
T ss_pred hhhhhccCHHHHHHHHHH------HhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHH----HHHHHhCCC
Confidence 999999999998876531 1112345566777777666642111123444444444444433 344445554
Q ss_pred eeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 777 VQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 777 v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+...... |.++.+.+.... . ...+++..|+ ++||.+.|+ .+.+|+. +..+++++++++++|.
T Consensus 315 ~~~~~p~g~~~~~~~l~~~~----~---~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~al~~l~ 385 (391)
T PRK08361 315 IKVFEPKGAFYVFANIDETG----M---SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRIS--YATSKEKLIEAMERME 385 (391)
T ss_pred CeecCCCEEEEEEEECCCCC----C---CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 4444445 455666775311 0 1456777776 579999873 1578886 3457788888888888
Q ss_pred HHHHH
Q 002941 848 QRLEE 852 (863)
Q Consensus 848 ~~l~~ 852 (863)
+++++
T Consensus 386 ~~l~~ 390 (391)
T PRK08361 386 KALEE 390 (391)
T ss_pred HHHhc
Confidence 87754
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-11 Score=136.04 Aligned_cols=216 Identities=14% Similarity=0.092 Sum_probs=133.1
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eeccc-cC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LT 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKg-Lg 692 (863)
...+.+++.| ++..|.+. +.+.+++|.++|++||+++|+||++..|-..+..+ ....++-...++ +|||. ..
T Consensus 169 ~~~~v~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 245 (409)
T PLN02656 169 NTVALVIINP--GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIV 245 (409)
T ss_pred CceEEEEECC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccC
Confidence 4567788888 67888654 67789999999999999999999998774444321 111122122233 57998 45
Q ss_pred CCCCCceeeecc--------HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLAT--------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (863)
Q Consensus 693 gG~~Pigav~~~--------~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~ 764 (863)
.| +.+|+++++ +++++.+... .....+.++++.+++.++|+-- .+++.++.++..+..++.+
T Consensus 246 pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~~- 315 (409)
T PLN02656 246 PG-WRLGWFVTTDPSGSFRDPKIVERIKKY-------FDILGGPATFIQAAVPTILEQT-DESFFKKTINILKQSSDIC- 315 (409)
T ss_pred cc-eeEEEEEEeCcccccccHHHHHHHHHH-------HhhhcCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHH-
Confidence 67 899999983 5777776531 1111245677888888777631 2334444444444444433
Q ss_pred HHHHHHHhcCCCee-Eeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHH
Q 002941 765 LELIQQISSHRTVQ-RVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPE 837 (863)
Q Consensus 765 ~~l~~~~~~~p~v~-~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~e 837 (863)
.+.+..++.+. .++.. |+++.+.+...... ... .....+...|.++||++.|+. +.+|+.. ..+++
T Consensus 316 ---~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~-~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~--~~~~e 388 (409)
T PLN02656 316 ---CDRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DIS-DDIDFCFKLAREESVIILPGTAVGLKNWLRITF--AADPS 388 (409)
T ss_pred ---HHHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCC-CHHHHHHHHHHhCCEEEecchhcCCCCeEEEEe--CCCHH
Confidence 33444444322 12344 46667776421000 000 012234567788999999852 5788864 45789
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEF 853 (863)
Q Consensus 838 eid~~v~~L~~~l~~l 853 (863)
++++.+++|.+++...
T Consensus 389 ~l~eal~rl~~~~~~~ 404 (409)
T PLN02656 389 SLEEALGRIKSFYLRH 404 (409)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998877643
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=137.17 Aligned_cols=318 Identities=14% Similarity=0.096 Sum_probs=187.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+.. .++ .+|.+.+|+.+.+..... .++.....+|.+.++++++-. .+.+++++++++|...+++
T Consensus 25 ~~i~l~~~~~--~~~--~~~~~~~a~~~~~~~~~~----~y~~~~~~~lr~aia~~~~~~-~~~I~it~G~~~al~~~~~ 95 (353)
T PRK05387 25 KLIKLNTNEN--PYP--PSPKVLEAIRAALGDDLR----LYPDPNADALRQAIAAYYGLD-PEQVFVGNGSDEVLAHAFL 95 (353)
T ss_pred ceeeccCCCC--CCC--CCHHHHHHHHHHhhhhhh----cCCCCcHHHHHHHHHHHhCCC-HHHEEEcCCHHHHHHHHHH
Confidence 5677776543 354 368999999887654211 122223357778888877533 4689999999999998887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| ..|+...-+|......+ ...| .
T Consensus 96 ~l~~---------~g------------d~vlv~~P~y~~~~~~~-~~~g------------------------------~ 123 (353)
T PRK05387 96 AFFN---------HD------------RPLLFPDITYSFYPVYA-GLYG------------------------------I 123 (353)
T ss_pred HhcC---------CC------------CEEEEeCCCHHHHHHHH-HHcC------------------------------C
Confidence 6521 12 45777776663332111 1101 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|.. +.+ .-| .+.++ + ..-..+++.| ++..|.+.+
T Consensus 124 ~~~~v~~~-----------------~~~--~~d--------~~~l~----~-------~~~~v~~~~P--~NPtG~~~~- 162 (353)
T PRK05387 124 PYEEIPLD-----------------DDF--SID--------VEDYL----R-------PNGGIIFPNP--NAPTGIALP- 162 (353)
T ss_pred EEEEeecC-----------------CCC--CCC--------HHHHH----h-------cCCEEEEeCC--CCCCCCCCC-
Confidence 01111100 000 001 11222 1 1124578888 789998776
Q ss_pred HHHHHHHHHHHHHc-CCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~-gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+++.++++++ |+++|+||++..|+. .. ........+.++ +|||.++ .| +.+|++++++++.+.+...
T Consensus 163 ---~~~~~~l~~~~~~~~livDe~y~~~~~--~~-~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~ 235 (353)
T PRK05387 163 ---LAEIERILAANPDSVVVIDEAYVDFGG--ES-AIPLIDRYPNLLVVQTFSKSRSLAG-LRVGFAIGHPELIEALNRV 235 (353)
T ss_pred ---HHHHHHHHHhCCCcEEEEeCcccccCC--cc-hHHHHhhCCCEEEEEehhHhhcchh-hhceeeecCHHHHHHHHHh
Confidence 44445555554 999999999977742 11 111111223333 6799987 77 7999999999999887642
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
. ....+++.++++.+++.++|+ +.++.++.++.....++.+.+ .+.+++. .-....|.++.+.+...
T Consensus 236 ~-----~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~----~L~~~g~-~~~~~~~~~~~~~~~~~ 302 (353)
T PRK05387 236 K-----NSFNSYPLDRLAQAGAIAAIE---DEAYFEETRAKVIATRERLVE----ELEALGF-EVLPSKANFVFARHPSH 302 (353)
T ss_pred h-----ccCCCCCcCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHH----HHHHCCC-eECCCcCcEEEEECCCC
Confidence 1 112355677888887777764 444444555444444444433 3334432 22233455665655421
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...++++.|.++||++++.+ +.+|+.. .+++++++++++|++++.
T Consensus 303 ---------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 303 ---------DAAELAAKLRERGIIVRHFNKPRIDQFLRITI---GTDEEMEALVDALKEILA 352 (353)
T ss_pred ---------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHHHHHHhh
Confidence 15678888999999997653 5788863 377999999999988654
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-11 Score=134.30 Aligned_cols=324 Identities=16% Similarity=0.094 Sum_probs=184.6
Q ss_pred CcHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.+|.+.+|+...+.+. +.........+...++.++|+++++.+ .+.++++++|++++..++..+ +.... .+. +
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~~~~~-~~~--~- 105 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAA-KNLAR-EEK--R- 105 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHH-HHHHh-ccC--C-
Confidence 4677778877665443 211100112344578889999998843 246788999999999998766 22110 000 0
Q ss_pred cCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
..+|+..+.+|.+... +....|.. +..++.+..+
T Consensus 106 ----------g~~vl~~~~~h~~~~~-~~~~~G~~----------------------------~~~v~~~~~~------- 139 (373)
T TIGR03812 106 ----------TPNIIVPESAHFSFEK-AAEMLGLE----------------------------LRYAPLDEDY------- 139 (373)
T ss_pred ----------CcEEEECCcchHHHHH-HHHHcCCe----------------------------EEEEeeCCCC-------
Confidence 1467777666544211 11111100 0111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+++ +.++.+++.| .+..|.+.+ +++|.++|++||+
T Consensus 140 --------------~~d--------~~~l~~~l~~-------~~~~vv~~~~--~~~tG~~~~----~~~i~~l~~~~~~ 184 (373)
T TIGR03812 140 --------------TVD--------VKDVEDLIDD-------NTIGIVGIAG--TTELGQIDD----IEELSKIALENGI 184 (373)
T ss_pred --------------CcC--------HHHHHHHHhh-------CcEEEEEECC--CCCCCccCC----HHHHHHHHHHcCC
Confidence 011 2445555542 2356677777 366787766 8999999999999
Q ss_pred eEEEecccccccccCC--c-chhhhcCC---CCcEEEec--cccCCCCCCceeee-ccHHHHHhhhcCCccceeeccc--
Q 002941 656 PVIFDEVFTGFWRLGV--E-TTADLLGC---VPDIACYG--KLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGH-- 724 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~--~-~a~e~~gv---~PDivt~s--KgLggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~-- 724 (863)
++|+||+|.++ ..+. + .......+ ..|.++++ |...++ .|.|+++ .++++.+.+.... ++....
T Consensus 185 ~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~---~~~~~~~~ 259 (373)
T TIGR03812 185 YLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDA---PYLTVKKQ 259 (373)
T ss_pred eEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhhcccC---cccCCCCC
Confidence 99999999644 2110 0 00001111 24666653 743344 5777665 5778877664211 111111
Q ss_pred ---CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc
Q 002941 725 ---SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 725 ---T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~ 801 (863)
+.+.++.+++++.++|+.+.+++ .+++.++..++.+++.+.+. +.+...-+.+...++.+.+. +
T Consensus 260 ~~~~gt~~~~~~~~~~~~l~~l~~~g-~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~~~~v~~~~~--~------ 326 (373)
T TIGR03812 260 ATITGTRSGASAAATYAVIKYLGREG-YRKIVAECMENTRYLVEELK----KIGFEPVIEPVLNIVAFEVD--D------ 326 (373)
T ss_pred cceEeechhHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHH----hCCCeEEcCCCceEEEEEeC--C------
Confidence 12345678888999999886544 23444555555555444433 23321112233344444442 1
Q ss_pred hHHHHHHHHHHHHCCcEEEec--CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 802 ~~~~~~l~~~l~e~GV~~~p~--g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.|.++|++++.. .+.+|++++..+|++|+|.++++|++
T Consensus 327 ---~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 327 ---PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ---HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 246888999999999875 46899998888999999999999865
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=137.15 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=113.1
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc---CCcchhhhcCCCCc--EEEeccccCCCCCCce-eeeccHHH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL---GVETTADLLGCVPD--IACYGKLLTGGVIPLA-ATLATNAV 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt---G~~~a~e~~gv~PD--ivt~sKgLggG~~Pig-av~~~~~i 707 (863)
|.+. +.+.++++.++|++||++|++||++. |+.. +... ....-.+| +++|||+++ +++| ++++++++
T Consensus 141 G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~--~~~~~~~~~~~~s~SK~~~---~~~G~~~~~~~~~ 213 (333)
T PRK10534 141 GKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL--KEITQYCDSFTICLSKGLG---TPVGSLLVGNRDY 213 (333)
T ss_pred Ceec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH--HHHHhcCCEEEEEeEcCCC---CcccceEEcCHHH
Confidence 6555 67778999999999999999999975 5332 2211 11111234 458999766 3567 47789999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~ 787 (863)
++.+..-. . ..+..+..+.++++++.++|+.. .+.+++..+ .++++. +.+.+.+. .-....+.++
T Consensus 214 i~~~~~~~---~-~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~----~r~~l~----~~L~~~g~-~~~~~~~nfv 278 (333)
T PRK10534 214 IKRARRWR---K-MTGGGMRQAGILAAAGLYALKHN--VARLQEDHD----NAAWLA----EQLREAGA-DVMRQDTNML 278 (333)
T ss_pred HHHHHHHH---H-HhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHH----HHHHHH----HHHHhCCC-ccCCCCceEE
Confidence 98876411 0 11222333456677777777532 111222222 223332 22333332 2223457777
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+.+... ....+.+.|+++||++++. ..+|+.....+|+|++++++++|++.+
T Consensus 279 ~~~~~~~---------~~~~~~~~l~~~gi~v~~~-~~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 279 FVRVGEE---------QAAALGEYMRERNVLINAS-PIVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred EEECCch---------hHHHHHHHHHHcCeeecCC-ceEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 7766421 2456788999999999875 456776555689999999999998665
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-11 Score=136.53 Aligned_cols=202 Identities=12% Similarity=0.044 Sum_probs=125.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-c-chhhhcCCCCc---EEEeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLLGCVPD---IACYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~-~a~e~~gv~PD---ivt~sKgLg-g 693 (863)
-+.+++.| ++..|. +.+.+-+++|.++|++||+++|+||++..|...+. . ......+..+. +-+|||.++ .
T Consensus 169 ~~v~l~~P--~NPTG~-~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 169 KLMYLNYP--NNPTGA-VATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMA 245 (389)
T ss_pred eEEEEECC--CCCCCC-cCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCc
Confidence 35566668 788886 45788899999999999999999999977754442 1 11222232222 237899996 7
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+.... .....+..+....++.++|. +.+.+.+++++..+..++.+.+. +.+
T Consensus 246 G-lRiG~~~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~~~~~----L~~ 312 (389)
T PRK08068 246 G-WRVAFAVGNESVIEAINLLQ------DHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNAFISA----CRE 312 (389)
T ss_pred c-ceeEeEecCHHHHHHHHHHH------hhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 7 89999999999999886421 11122333444555555553 23344455555544545544333 333
Q ss_pred CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
++ +.-....| .++.+.+.... .+..++..|++ +||++.|. .+.+|+.. ..+++.+.++++
T Consensus 313 ~g-~~~~~~~g~~~~~v~~~~~~--------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~ 381 (389)
T PRK08068 313 IG-WEVDAPKGSFFAWMPVPKGY--------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGL--LTDEERLREAVE 381 (389)
T ss_pred CC-CcccCCCeeEEEEEECCCCC--------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEE--cCCHHHHHHHHH
Confidence 43 22234455 45567775321 24678888886 69999873 25788864 456666666666
Q ss_pred HHHH
Q 002941 845 KLYQ 848 (863)
Q Consensus 845 ~L~~ 848 (863)
+|.+
T Consensus 382 ~l~~ 385 (389)
T PRK08068 382 RIGK 385 (389)
T ss_pred HHHH
Confidence 6643
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-11 Score=136.63 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=130.8
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc--hhhhcCCCC-cEE--EeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCVP-DIA--CYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~--a~e~~gv~P-Div--t~sKgLg-g 693 (863)
.+.+++.| ++..|.+. +.+-+++|.++|++||+++|+||++..|-..+..+ ..+..+... +++ +|||.++ .
T Consensus 161 ~~v~l~~p--~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK08912 161 KAVLLNNP--LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLT 237 (387)
T ss_pred eEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCc
Confidence 35566667 78888555 67789999999999999999999997653223211 111122222 233 6799998 8
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+... ....+++.++...+++.++|. ..+++.+++++..+..++.+.+. +..
T Consensus 238 G-lRiG~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~----L~~ 304 (387)
T PRK08912 238 G-WKVGFVCAAPPLLRVLAKA------HQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRLAAG----LRR 304 (387)
T ss_pred C-ceeEEEecCHHHHHHHHHH------HhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 8 8999999999999887641 112345566666666666664 23445555555555555544333 333
Q ss_pred CCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec---------CCEEEEecCCCCcHHHHHHH
Q 002941 774 HRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL---------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 774 ~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~ 842 (863)
++ +.-.... |.++.+.+...... ....++++.|+ ++||++.|. .+.+|+.. ..+++.++++
T Consensus 305 ~g-~~~~~~~g~~~l~~~l~~~~~~-----~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~--~~~~~~l~~~ 376 (387)
T PRK08912 305 IG-FPVLPSQGTYFLTVDLAPLGLA-----EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCF--AKRDATLDEA 376 (387)
T ss_pred CC-CcccCCCcceEEEecccccCCC-----CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEE--eCCHHHHHHH
Confidence 33 2222333 45666777541100 02456788776 579999873 15788763 4568889999
Q ss_pred HHHHHHHHH
Q 002941 843 LLKLYQRLE 851 (863)
Q Consensus 843 v~~L~~~l~ 851 (863)
+++|.++++
T Consensus 377 l~rl~~~l~ 385 (387)
T PRK08912 377 VERLAAARR 385 (387)
T ss_pred HHHHHHHHh
Confidence 988887664
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.5e-11 Score=134.45 Aligned_cols=340 Identities=14% Similarity=0.087 Sum_probs=190.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCC--CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~--~~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|... ++ ..+.+.+++.+.+... ..+....+..+....+++.+....+.. .-+.|+++++|++|+..
T Consensus 31 ~~i~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 31 GILKLTLGEPD--FT--TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CeEEcCCCCCC--CC--CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 56676655432 44 3577888888777542 111111122233444555554332211 01579999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| ..|+.-..+|.+..... ...|..
T Consensus 107 ~~~~~~~---------~g------------d~vl~~~p~y~~~~~~~-~~~g~~-------------------------- 138 (391)
T PRK07309 107 SLTAILE---------PG------------DKVLLPAPAYPGYEPIV-NLVGAE-------------------------- 138 (391)
T ss_pred HHHHhcC---------CC------------CEEEEeCCCCcchHHHH-HHcCCE--------------------------
Confidence 8875521 12 56888888888753221 111100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~ 635 (863)
+..++.... .+. -| .+.+++.++. ..+++.++++. | ++..|.
T Consensus 139 --~~~~~~~~~------------------~~~--~d--------~~~l~~~~~~-----~~~~~~~i~l~~P--~NPtG~ 181 (391)
T PRK07309 139 --IVEIDTTEN------------------DFV--LT--------PEMLEKAILE-----QGDKLKAVILNYP--ANPTGV 181 (391)
T ss_pred --EEEEecCCc------------------CCc--CC--------HHHHHHHhhc-----cCCCeEEEEEECC--CCCCCc
Confidence 001111000 000 01 2345555532 12345555554 7 688886
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
.. +.+-+++|.++|++||+++|+||++..|-..|.. .....+ .+| ++ +|||.++ .| +.+|++++++++++
T Consensus 182 ~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~ 257 (391)
T PRK07309 182 TY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTA 257 (391)
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHH
Confidence 55 5677999999999999999999999877433421 122111 223 33 6799997 77 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... ....+.+.++++..++.+.|+.- ......+++..+..++.+ .+.+++++ +...... |.++.
T Consensus 258 ~~~~~------~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~----~~~l~~~~-~~~~~p~gg~~~~ 324 (391)
T PRK07309 258 QLIKS------HQYLVTAATTMAQFAAVEALTNG--KDDALPMKKEYIKRRDYI----IEKMTDLG-FKIIKPDGAFYIF 324 (391)
T ss_pred HHHHH------HhhcccCCChHHHHHHHHHHhCC--hhHHHHHHHHHHHHHHHH----HHHHHHCC-CeecCCCeeEEEE
Confidence 87641 11223355777777777766521 111222223223333333 33344443 2222333 45555
Q ss_pred EEEccCCcCCCCchHHHHHHHHH-HHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.... . .....+++. +.++||.+.|+ ++.+|+... .+++++++++++|.++++++
T Consensus 325 ~~l~~~~-~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 325 AKIPAGY-N-----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred EECCCCC-C-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 6654321 0 013456765 45789999863 257888643 47889999999998887654
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-11 Score=135.87 Aligned_cols=317 Identities=13% Similarity=0.102 Sum_probs=188.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+..+ .+.+| ..|.+.+++.+. .... .++.+...+|.++|++..+-. .+.|++++++++++..+++
T Consensus 53 ~~i~l~~n--~~p~~--~~~~v~~a~~~~-~~~~-----~Yp~~~~~~lr~~ia~~~~~~-~~~I~~t~Ga~~~i~~~~~ 121 (380)
T PLN03026 53 DIVKLDAN--ENPYG--PPPEVLEALGNM-KFPY-----VYPDPESRRLRAALAEDSGLE-SENILVGCGADELIDLLMR 121 (380)
T ss_pred ceEEccCC--CCCCC--CCHHHHHHHHhh-Hhhc-----cCCCCCHHHHHHHHHHHhCcC-hhhEEEcCCHHHHHHHHHH
Confidence 56776653 24565 468888887642 2111 123333567888888887643 3679999999999988876
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.... .| ..|+...-+|......+... | .
T Consensus 122 ~~~~---------~g------------d~Vlv~~P~y~~y~~~~~~~-g------------------------------~ 149 (380)
T PLN03026 122 CVLD---------PG------------DKIIDCPPTFGMYVFDAAVN-G------------------------------A 149 (380)
T ss_pred HhcC---------CC------------CEEEEcCCChHHHHHHHHHc-C------------------------------C
Confidence 5421 12 46888887775332111111 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|... .+ ..| .+.+++.+.. .+.-..+|+.| ++..|...+
T Consensus 150 ~~~~v~~~~-----------------~~--~~d--------~~~l~~~~~~------~~~~~v~l~~P--~NPTG~~~~- 193 (380)
T PLN03026 150 EVIKVPRTP-----------------DF--SLD--------VPRIVEAVET------HKPKLLFLTSP--NNPDGSIIS- 193 (380)
T ss_pred EEEEeecCC-----------------CC--CcC--------HHHHHHHHhc------cCCcEEEEeCC--CCCCCCCCC-
Confidence 001111000 00 011 1344444421 12234445555 789998776
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+++.++++.. +++|+||++..|...+... ....-.+.++ +|||.+| .| +.+|++++++++++.+....
T Consensus 194 ---~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~ 266 (380)
T PLN03026 194 ---DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAK 266 (380)
T ss_pred ---HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHhhcCcc-ccceeeecCHHHHHHHHHhc
Confidence 45556666554 8999999998774323221 1111123443 7899997 78 89999999999998876421
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..++.+.++..++.++|+ +.++.+++++..+..++.+. +.+.+.+.+......|.++.+.+....
T Consensus 267 --------~~~~~~~~~q~aa~~aL~---~~~~~~~~~~~~~~~r~~l~----~~L~~~~~~~~~p~~~~f~~~~~~~~~ 331 (380)
T PLN03026 267 --------QPYNVSVAAEVAACAALS---NPKYLEDVKNALVEERERLF----GLLKEVPFLEPYPSDANFILCRVTSGR 331 (380)
T ss_pred --------CCCCCCHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHH----HHHHHCCCCeECCCCCeEEEEECCCCC
Confidence 235567777888887775 44555555554444455443 334444433223456777777765321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...++++.|.++||.+++. .+.+|++ ..++++++.++++|++
T Consensus 332 --------~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis---~~~~~~~~~l~~al~~ 378 (380)
T PLN03026 332 --------DAKKLKEDLAKMGVMVRHYNSKELKGYIRVS---VGKPEHTDALMEALKQ 378 (380)
T ss_pred --------CHHHHHHHHHHCCeEEEECCCCCCCCEEEEe---cCCHHHHHHHHHHHHH
Confidence 1467888999999999874 2678886 3477888888888865
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-11 Score=134.08 Aligned_cols=333 Identities=13% Similarity=0.044 Sum_probs=187.5
Q ss_pred EEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHHHH
Q 002941 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEIAL 478 (863)
Q Consensus 401 ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~AL 478 (863)
.+|+.+|.. .++ ..|++.+++++.......+..+.+..+....+++.+....+.. ..+ .+++++++++|...++
T Consensus 2 ~~~~~~g~p--~~~--~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 2 LFDFGTGDP--KEP--TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred eEeccCCCC--CCC--CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 456666543 344 3688999988876543222211122234445555554433321 123 7999999999987766
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
.... ..|. ....|+...-+|.+....+...+.
T Consensus 78 ~~~~-----~~g~-------------~~d~Vl~~~p~y~~~~~~~~~~g~------------------------------ 109 (350)
T TIGR03537 78 LVFI-----DPEE-------------DRRRVIFGTPGYPVYERGALFAGG------------------------------ 109 (350)
T ss_pred HHHc-----CCCC-------------CCceEEEcCCCCcchHHHHHhcCC------------------------------
Confidence 5431 1111 014788888888776443322211
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+++|... .+.+. -| .+.+++.+.+ +.-+.+|..| ++..|.. .
T Consensus 110 -~~~~v~~~~---------------~~~~~--~d--------~~~l~~~~~~-------~~~~i~i~~p--~NPtG~~-~ 153 (350)
T TIGR03537 110 -EPTAVKLKK---------------EDGFL--LR--------LEKVEKSILE-------ETKIVWINYP--HNPTGAT-A 153 (350)
T ss_pred -EEEEcccCc---------------ccCCc--cC--------HHHHHHhhhh-------ccEEEEEeCC--CCCcCcc-c
Confidence 011111000 00000 01 2334444431 2234445556 7888854 5
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhc
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~ 713 (863)
+.+-+++|.++|++||+++|+||++..+ ..+. ......++. +.++ ++||.++ .| +.+|++++++++.+.+..
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~ 230 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECYTEI-YFGEPPHSALEVGI-ENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRK 230 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccccc-ccCCCCCchhhcCc-CCEEEEeecccccCCcc-ccceeeecCHHHHHHHHH
Confidence 7888999999999999999999999654 2232 211111221 2233 5799985 56 899999999999888764
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQ 792 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~ 792 (863)
. ....+.+.++++.+++.+++. ++++.++.++..+..++.+ .+.+.++.. .-.... |.++.+++.
T Consensus 231 ~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~----~~~l~~~g~-~~~~~~g~~~~~~~~~ 296 (350)
T TIGR03537 231 L------RANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLF----IEFFNKVGL-EYLYPDATFYLWVKVP 296 (350)
T ss_pred H------HHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHH----HHHHHHCCC-cccCCCeEEEEEEECC
Confidence 1 112234455566666666654 3444444444444444433 233334432 222333 555667775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
... ....+++.|.++||++.|+ .+.+|+. +..+++++++++++|.+
T Consensus 297 ~~~--------~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~--~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 297 SGI--------DAKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEALRLWER 349 (350)
T ss_pred CCC--------CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHhc
Confidence 421 2467889999999999863 2568885 34678888888888764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-11 Score=142.41 Aligned_cols=347 Identities=11% Similarity=0.061 Sum_probs=192.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
..+++..|.- +.+|..-.+.+++++.+++.....+....+..+....+++.+...-+.+ ..+.|++++++++|+..++
T Consensus 147 ~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 147 HILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred CeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 4455444321 2344434678999998887643222211122333444555543321111 1357999999999999888
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+..+. .| ..|+...-+|......+...++..
T Consensus 226 ~~l~~---------~G------------d~Vli~~P~y~~y~~~~~~~g~~~---------------------------- 256 (517)
T PRK13355 226 SALLD---------DG------------DEVLIPSPDYPLWTACVNLAGGTA---------------------------- 256 (517)
T ss_pred HHhCC---------CC------------CEEEEcCCCCcCHHHHHHHCCCEE----------------------------
Confidence 75521 12 569998888877654332221100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+.+|-.. ..-|. -| .+.+++.+. +..-+.+|+.| ++..|.+.
T Consensus 257 ---v~~~~~~---------------~~~~~--~d--------~~~l~~~~~-------~~~k~i~i~nP--~NPTG~v~- 298 (517)
T PRK13355 257 ---VHYRCDE---------------QSEWY--PD--------IDDIRSKIT-------SRTKAIVIINP--NNPTGALY- 298 (517)
T ss_pred ---EEeecCc---------------ccCCC--CC--------HHHHHHhcC-------cCceEEEEECC--CCCCCcCc-
Confidence 1111000 00000 11 134444442 23456778889 78899665
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcE--E---EeccccC-CCCCCceeeec--cHHH--
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDI--A---CYGKLLT-GGVIPLAATLA--TNAV-- 707 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDi--v---t~sKgLg-gG~~Pigav~~--~~~i-- 707 (863)
+.+.+++|.++|++||+++|+||++..|-..|.. -.... ..||. + +|||.++ .| +.+|++++ ++++
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~ 375 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAK 375 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHH
Confidence 6888999999999999999999999877333321 11111 23553 2 3699864 56 89999984 4543
Q ss_pred --HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce
Q 002941 708 --FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (863)
Q Consensus 708 --~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl 785 (863)
++.+.. .....++.+.++..++.++|+-.+ ...+.+.+. +++.+. ++.+.+.+.+.|.+......|.
T Consensus 376 ~~~~~l~~-------~~~~~~~~~~~~q~a~~~aL~~~~--~~~~~~~~~-~~~~~~-r~~l~~~L~~~~g~~~~~p~g~ 444 (517)
T PRK13355 376 DYIEGLNM-------LANMRLCSNVPAQSIVQTALGGHQ--SVKDYLVPG-GRVYEQ-RELVYNALNAIPGISAVKPKAA 444 (517)
T ss_pred HHHHHHHH-------HhcCcCCcChHHHHHHHHHhcCCc--cHHHHHHHH-HHHHHH-HHHHHHHHhcCCCcccCCCCee
Confidence 333321 011224456677777777774211 111222221 111111 1233445556665555667777
Q ss_pred EEEE-EEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 786 LCAI-ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 786 ~~~i-el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|+.+ .+...... .. .....+...|.++||.+.|+ .+.+|++ ++.+++++++++++|.+.+...
T Consensus 445 fy~~~~l~~~~~~--~~-~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris--~~~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 445 FYIFPKIDVKKFN--IH-DDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVV--YLPRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred eEEEeecCcccCC--CC-CHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEE--eCCCHHHHHHHHHHHHHHHHHh
Confidence 6554 55421000 00 01233445677899999873 2578876 4678899999999999988654
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-11 Score=134.78 Aligned_cols=337 Identities=11% Similarity=0.011 Sum_probs=187.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~ 476 (863)
.++|+..|... ++ ..+.+.+++.+.++.... +....+..+...++++.+....+-. ..+ .+++++++++|+..
T Consensus 29 ~~i~l~~~~p~--~~--~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 29 NLISLTIGQPD--FP--TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CeEEecCCCCC--CC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 45666655322 33 357889999988875321 1111122344455566554332311 124 79999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++..+. .| ..|+.-..+|.+........+.
T Consensus 105 ~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~---------------------------- 135 (387)
T PRK07683 105 AFRTILE---------PG------------TEVILPAPIYPGYEPIIRLCGA---------------------------- 135 (387)
T ss_pred HHHHhCC---------CC------------CEEEEcCCCccchHHHHHHcCC----------------------------
Confidence 8876521 12 4688877777765332221110
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
..+.+|... +.+. -| .+.+++.+. ...-+.++..| ++..|..
T Consensus 136 ---~~~~~~~~~----------------~~~~--~~--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~ 177 (387)
T PRK07683 136 ---KPVFIDTRS----------------TGFR--LT--------AEALENAIT-------EKTRCVVLPYP--SNPTGVT 177 (387)
T ss_pred ---EEEEeecCc----------------ccCC--CC--------HHHHHHhcC-------cCceEEEEeCC--CCCCCcC
Confidence 001111000 0000 01 123444442 12234455666 6888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEE---EeccccC-CCCCCceeeeccHHHHHhh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
. +++.+++|.++|+++|+++|+||++..+...+.......+ +....++ +|||.++ .| +.+|++++++++++.+
T Consensus 178 ~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~ 255 (387)
T PRK07683 178 L-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHI 255 (387)
T ss_pred C-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHH
Confidence 4 7788999999999999999999999876322222111112 2222333 6799998 78 8999999999999887
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIE 790 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~ie 790 (863)
... ......+.+.++..++.+.|+. ...+.+++++..+..++.+.+. +.+.. +.-..+.| .++.+.
T Consensus 256 ~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~----l~~~~-~~~~~~~~~~~~~~~ 322 (387)
T PRK07683 256 LKV------HQYNVTCASSISQYAALEALTA--GKDDAKMMRHQYKKRRDYVYNR----LISMG-LDVEKPTGAFYLFPS 322 (387)
T ss_pred HHH------HHhccCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHH----HHHcC-CcccCCCeeEEEEEe
Confidence 641 1111233456676777666642 1223344444444444433333 33332 22223444 455555
Q ss_pred EccCCcCCCCchHHHHHHHHH-HHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.... .....++.. +.++||.+.|+ .+.+|+. +..+++++.+++++|.+.++
T Consensus 323 ~~~~~-------~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~--~~~~~~~~~~al~~l~~~l~ 382 (387)
T PRK07683 323 IGHFT-------MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLS--YAYSIETLKEGLDRLEAFLQ 382 (387)
T ss_pred cccCC-------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 54311 013345554 56789999873 2678885 45588899999999988775
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=132.64 Aligned_cols=332 Identities=11% Similarity=0.017 Sum_probs=188.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+ .|. -.+.+.+|+.+.+..........+ ..+...++.+.|+++++.. .+.+.|++++++++
T Consensus 19 ~yl~~~~------~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPA------GTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVVFGANATSLT 90 (397)
T ss_pred EEecCCc------cCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCCHHHHH
Confidence 5777443 233 468999999998876432110111 1234578889999988743 24699999999988
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
..++..... . .+ .| .+||..+.+|.+.......... ..+ .
T Consensus 91 ~~~~~~~~~-~---~~--~g------------d~vl~~~~~~~s~~~~~~~~~~---~~g-----------~-------- 130 (397)
T TIGR01976 91 FLLSRAISR-R---WG--PG------------DEVIVTRLDHEANISPWLQAAE---RAG-----------A-------- 130 (397)
T ss_pred HHHHHHHHh-c---CC--CC------------CEEEEcCCchHhHHHHHHHHHH---hcC-----------C--------
Confidence 766654410 0 00 11 4677777665553211101100 000 0
Q ss_pred ccCceeeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 555 MYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 555 ~~~~~~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+. .+ ..+ .+.+++.+. +++.+|+++-+ .+..
T Consensus 131 ---~~~~~~~~~~~~---------------------~~~--------~~~l~~~i~--------~~~~lv~i~~~-~n~t 169 (397)
T TIGR01976 131 ---KVKWARVDEATG---------------------ELH--------PDDLASLLS--------PRTRLVAVTAA-SNTL 169 (397)
T ss_pred ---EEEEEeccccCC---------------------CcC--------HHHHHHhcC--------CCceEEEEeCC-CCCC
Confidence 000111110 00 001 234555442 23455565554 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+||+|. +|. + ...... ..+|++ ++.|.+| .++|++++++++++.+
T Consensus 170 G~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~-~~~~~~--~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l 237 (397)
T TIGR01976 170 GSIVD----LAAITELVHAAGALVVVDAVHY-APH-G-LIDVQA--TGADFLTCSAYKFFG---PHMGILWGRPELLMNL 237 (397)
T ss_pred CccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c-CCCHHH--cCCCEEEEechhhcC---CceEEEEEcHHHHhhC
Confidence 98876 9999999999999999999984 331 1 112222 346877 4579873 4689999999988876
Q ss_pred hcCCccceeecc-----cCCCccHHHHHHHHHHHHHhcChh-------------hHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 712 VGDSKLKALLHG-----HSYSAHALGCAAAAKSIKWFKDPQ-------------TNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 712 ~~~~~~~~~~~~-----~T~~~~pla~AAalAaL~~l~~~~-------------l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
........ ... .+-+.+...+++..++++.+++.+ ..++++++...+.+.+.+ .+.+
T Consensus 238 ~~~~~~~~-~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~ 312 (397)
T TIGR01976 238 PPYKLTFS-YDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLV----GLSD 312 (397)
T ss_pred CCccccCc-cCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHH----HHhc
Confidence 53210000 000 001234556667777777764322 133444444555554433 3344
Q ss_pred CCCeeEec-----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------------CCEEEEecCC
Q 002941 774 HRTVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------------GNVIYLMCGP 832 (863)
Q Consensus 774 ~p~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------------g~~lr~~ppl 832 (863)
.+.+.-+. ..+.++.+.+.... ...+.+.|.++||+++.+ ++.+|+++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 383 (397)
T TIGR01976 313 LPGVTLYGVARLAARVPTVSFTVHGLP---------PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAH 383 (397)
T ss_pred CCCEEEeCCCCccCCCceEEEEeCCcC---------HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeec
Confidence 44332211 14456666554221 456888999999999853 3579999999
Q ss_pred CCcHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKL 846 (863)
Q Consensus 833 ~~t~eeid~~v~~L 846 (863)
.+|++|+++++++|
T Consensus 384 ~~t~~di~~l~~~l 397 (397)
T TIGR01976 384 YNTAEEVDRLLEAL 397 (397)
T ss_pred cCCHHHHHHHHHhC
Confidence 99999999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-11 Score=135.32 Aligned_cols=346 Identities=10% Similarity=0.020 Sum_probs=191.4
Q ss_pred eEEeeeccccc-ccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWT-QGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~-~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.-. ..++ -.+.+.+++.+.+..... .....+..+....+++.+....+.+ ..+.+++++++++|+..
T Consensus 31 ~~i~l~~g~p~~~~~~--p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 108 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQ--PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQL 108 (398)
T ss_pred CeEEEeCCCCCcCCCC--CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 56777665543 2455 368899999887754311 1111122233334444443322311 13579999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
++..... .| ..|++...+|.+....+...+.
T Consensus 109 ~~~~~~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~---------------------------- 139 (398)
T PRK08363 109 IFGALLD---------PG------------DEILIPGPSYPPYTGLVKFYGG---------------------------- 139 (398)
T ss_pred HHHHhCC---------CC------------CEEEEcCCCCcchHHHHHHcCC----------------------------
Confidence 8875521 12 4688877777665332221111
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
..+.++... .+.+ ..| .+.+++.+. ++.-+.+++.| ++..|..
T Consensus 140 ---~~v~~~~~~---------------~~~~--~~d--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~~ 182 (398)
T PRK08363 140 ---VPVEYRTIE---------------EEGW--QPD--------IDDIRKKIT-------EKTKAIAVINP--NNPTGAL 182 (398)
T ss_pred ---EEEEecccc---------------ccCC--cCC--------HHHHHhhCC-------cceEEEEEECC--CCCCCcC
Confidence 001110000 0000 001 123444332 22344566677 7888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---Eecccc-CCCCCCceeeec--cHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLL-TGGVIPLAATLA--TNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgL-ggG~~Pigav~~--~~~i~~~ 710 (863)
. +.+-+++|.++|++||+++|.||++..+-..+.......+.-...++ +|||.+ ..| +.+|++++ ++++++.
T Consensus 183 ~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~ 260 (398)
T PRK08363 183 Y-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATG-WRLGYIYFVDPEGKLAE 260 (398)
T ss_pred c-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCcc-ceEEEEEEeCcHHHHHH
Confidence 5 67789999999999999999999997663333221222222122343 689995 467 89999997 6666655
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE-E
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA-I 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~-i 789 (863)
+...-. . ....+++.++++..++.++|.. .+++.+++++..+..++.+ .+.+.+++.+.-....|.++. +
T Consensus 261 l~~~~~--~-~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l----~~~L~~~~~~~~~~p~g~~~~~~ 331 (398)
T PRK08363 261 VREAID--K-LARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYI----YKRLNEIPGISTTKPQGAFYIFP 331 (398)
T ss_pred HHHHHH--H-HhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHH----HHHHhcCCCCEecCCCeEEEEEE
Confidence 432100 0 1112356677777777777752 2344445444444444433 334445554433345565554 4
Q ss_pred EEccCCcCCCCchHHHHHH-HHHHHHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASL-LKKLREDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l-~~~l~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+...... ....+ ...|.++||.+.|+. +.+|++ +..+++++++++++|.+.+.+
T Consensus 332 ~l~~~~~~------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 332 RIEEGPWK------DDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLV--FLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred EeccCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHH
Confidence 55431000 02234 455678999998732 568876 356789999999999887765
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-11 Score=135.61 Aligned_cols=334 Identities=13% Similarity=0.069 Sum_probs=189.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCCC--CCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~~--~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.. .++ -.+.+.+++.+.+.+.. .+....+..+....+++.|.+..+... .+.++.+++|++|...
T Consensus 30 ~~i~l~~g~p--~~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 30 DALNLSQGAP--NFA--PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CeEEcCCCCC--CCC--CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 4566665543 344 36889999887765421 111122334556778888877666320 1469999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| .+|++..-+|.+........ |
T Consensus 106 ~~~~l~~---------~g------------d~Vlv~~p~y~~~~~~~~~~-g---------------------------- 135 (384)
T PRK12414 106 AISALVH---------PG------------DEVIYFEPSFDSYAPIVRLQ-G---------------------------- 135 (384)
T ss_pred HHHHhcC---------CC------------CEEEEeCCCccchHHHHHHc-C----------------------------
Confidence 8875421 12 56888888876532221111 1
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|... +.+ .-| .+.+++.+. ++..+.+|+.| ++..|.+
T Consensus 136 --~~~~~v~~~~----------------~~~--~~d--------~~~l~~~l~-------~~~~~v~i~~p--~NPTG~~ 178 (384)
T PRK12414 136 --ATPVAIKLSP----------------EDF--RVN--------WDEVAAAIT-------PRTRMIIVNTP--HNPSATV 178 (384)
T ss_pred --CEEEEEecCc----------------ccc--ccC--------HHHHHhhcC-------cccEEEEEcCC--CCCCCcC
Confidence 0001111000 000 001 133444442 22233445556 7888875
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hh-hhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~-e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
. +++.+++|.++|++||+++|+||++..|...|... .. ...+....++ +|||.++ .| +.+|++++++++++.
T Consensus 179 ~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~ 256 (384)
T PRK12414 179 F-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDE 256 (384)
T ss_pred C-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHHH
Confidence 5 67789999999999999999999997653333211 11 1112222333 6899996 78 899999999999888
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~i 789 (863)
+..- ....+++.+.++..++.+.|+ ++....++.+..++.++.+ .+.+.+++ +.-....| .++.+
T Consensus 257 l~~~------~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~g-~~~~~~~gg~~~~~ 322 (384)
T PRK12414 257 IRKV------HQFMVFSADTPMQHAFAEALA---EPASYLGLGAFYQRKRDLL----ARELAGSR-FELLPSEGSFFMLA 322 (384)
T ss_pred HHHH------HhheecCCCcHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH----HHHHHhCC-CeecCCCcceEEEE
Confidence 7641 122356667777777766654 3322223333333333333 33344443 22234445 45445
Q ss_pred EEccCCcCCCCchHHHHHHH-HHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLL-KKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~-~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.... . ....+++ ..|.++||.+.|+ ++.+|++. ..+++++++++++|.+
T Consensus 323 ~~~~~~--~----~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 323 RFRHFS--D----ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSF--SKDDATLVEGARRLCS 383 (384)
T ss_pred cccccC--C----CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEe--cCCHHHHHHHHHHHhh
Confidence 664310 0 0123444 5566889999873 24688864 4578889998888753
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-11 Score=136.25 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=132.2
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---EeccccC-CCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGV 695 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgLg-gG~ 695 (863)
+.++..| ++..|... +.+-+++|.++|++||+++|.||++..|-..+.. .....+.-..+++ +|||.++ .|
T Consensus 180 ~i~~~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG- 255 (412)
T PTZ00433 180 ALIMTNP--SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPG- 255 (412)
T ss_pred EEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCC-
Confidence 4455677 78888555 6777999999999999999999999877433321 1111121111233 6799984 67
Q ss_pred CCceeeec------cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLA------TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 696 ~Pigav~~------~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
+.+|++++ .+++++.+... ...+++.++++.+++.+.|.- ..+++.+++++..+..++.+ .+
T Consensus 256 lRlG~~i~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~r~~l----~~ 323 (412)
T PTZ00433 256 WRLGWLLLVDPHGNGGDFLDGMKRL-------GMLVCGPCSVVQAALGEALLN-TPQEHLEQIVAKLEEGAMVL----YN 323 (412)
T ss_pred eeEEEEEEeCCcccHHHHHHHHHHH-------hhccCCCChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH----HH
Confidence 89999996 24566665431 112356788888888777753 12344555554444444433 33
Q ss_pred HHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-----CEEEEecCCCCcHHHHHHH
Q 002941 770 QISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-----NVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 770 ~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~ 842 (863)
.+.++..+..+... |.++.+.+...... .. ....+++..|+ ++||.+.|+. +.+|+.. ...+++++++
T Consensus 324 ~L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~--~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~l~~a 398 (412)
T PTZ00433 324 HIGECIGLSPTMPRGSMFLMSRLDLEKFR-DI--KSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTI--SRPVEVLREA 398 (412)
T ss_pred HHhcCCCCcccCCCeeEEEEEEechhhcC-CC--CCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEe--cCCHHHHHHH
Confidence 44444333333444 66677777532100 00 01456888887 5799998742 5788764 4568889999
Q ss_pred HHHHHHHHHHHH
Q 002941 843 LLKLYQRLEEFD 854 (863)
Q Consensus 843 v~~L~~~l~~l~ 854 (863)
+++|.++++...
T Consensus 399 l~~l~~~~~~~~ 410 (412)
T PTZ00433 399 VERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHHhc
Confidence 999988887543
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-11 Score=135.18 Aligned_cols=205 Identities=11% Similarity=0.058 Sum_probs=127.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc--chhhhcCCC-CcEE---EeccccC-C
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCV-PDIA---CYGKLLT-G 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~-PDiv---t~sKgLg-g 693 (863)
+.+|+.| ++..|... +.+-+++|.++|++||+++|.||++..|-..+.. -....+.-. +.++ +|||.+| .
T Consensus 168 ~i~l~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~ 244 (388)
T PRK07366 168 LMVLSYP--HNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMG 244 (388)
T ss_pred EEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCc
Confidence 4555666 89999655 7888999999999999999999999877433321 111111111 2233 7899996 7
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+.... ...+++..+..+.++++++. +.+++.+++++..+..++.+.+ .+++
T Consensus 245 G-lRiG~~v~~~~li~~l~~~~------~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~----~L~~ 311 (388)
T PRK07366 245 G-FRIGFAIGNAQLIQALRQVK------AVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFIN----ALHQ 311 (388)
T ss_pred c-hhheehcCCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 7 89999999999998876411 11122222333444555553 2345555555555555554433 3334
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec---C----CEEEEecCCCCcHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL---G----NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~---g----~~lr~~ppl~~t~eeid~~v~~ 845 (863)
++.......-|+++.+.+...- . ....+++..| .++||++.|+ + +.+|+. ++.+++++++++++
T Consensus 312 ~~~~~~~p~~g~f~~~~~~~~~-~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~r 383 (388)
T PRK07366 312 IGWPVPLPEATMYVWAKLPEPW-Q-----GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFA--LVHDPDILEEAVER 383 (388)
T ss_pred CCCcccCCCeeEEEEEECCccc-C-----CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEE--ecCCHHHHHHHHHH
Confidence 4321122345777778775420 0 0134576666 5779999874 2 568875 34678999999998
Q ss_pred HHHH
Q 002941 846 LYQR 849 (863)
Q Consensus 846 L~~~ 849 (863)
|.+.
T Consensus 384 l~~~ 387 (388)
T PRK07366 384 IAAF 387 (388)
T ss_pred HHHh
Confidence 8764
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-11 Score=131.70 Aligned_cols=316 Identities=17% Similarity=0.140 Sum_probs=178.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+|++.+|+.++-.-.... -+..+...+++++++++++. ..++|+.||+.||..||....+ +|
T Consensus 12 ~~~~m~eam~~a~~~~~~~---YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~~~---------~~-- 74 (342)
T COG2008 12 PTPEMREALAAANAVGDDV---YGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAHCQ---------PG-- 74 (342)
T ss_pred CCHHHHHHHHhccccCCCC---CCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHhcC---------CC--
Confidence 5899999999775321111 12456788999999999984 7899999999999999986632 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (863)
..||+-+.+ |=.+..+ ++...|.+. ...+..|.
T Consensus 75 ----------~~vi~~~~a-Hi~~~E~---Ga~~~~~~~-----------------------~~~~~~~g---------- 107 (342)
T COG2008 75 ----------ESVICHETA-HIYTDEC---GAPEFFGGG-----------------------QKLPIVPG---------- 107 (342)
T ss_pred ----------CeEEEeccc-cceeccc---CcHHHHcCC-----------------------ceeccCCC----------
Confidence 234444332 3322211 111111100 00000010
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
++. .+. .+.++..+.. ...+......++.|.- +.++| .++|.++|+.+.++|++||+.
T Consensus 108 --------------~~G-klt---~e~v~~~i~~--~d~~~~~~~~~~~e~~-~te~G-tVy~l~el~~i~~~~k~~~l~ 165 (342)
T COG2008 108 --------------ADG-KLT---PEDVEAAIRP--DDIHHAPTPLAVLENT-ATEGG-TVYPLDELEAISAVCKEHGLP 165 (342)
T ss_pred --------------CCC-CcC---HHHHHHhhcC--CCcccCCCceEEEeec-cCCCc-eecCHHHHHHHHHHHHHhCCc
Confidence 000 000 2445555543 1112334556666664 56777 566899999999999999999
Q ss_pred EEEecccccccccCCcchhhhcC-------CCCcEEEe--ccccCCCCCCceeee-ccHHHHHhhhcCCccceeecccCC
Q 002941 657 VIFDEVFTGFWRLGVETTADLLG-------CVPDIACY--GKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSY 726 (863)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~g-------v~PDivt~--sKgLggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~ 726 (863)
|.+| |- |..- +.-.+| ---|.++| +|+++ .|.++++ ++.+++..+....+ ..|+-+
T Consensus 166 LHmD----GA-R~~n--A~valg~~~~~~~~~~D~v~~~~tK~g~---~~~gAiv~gn~~~~~~a~~~rK----~~Ggl~ 231 (342)
T COG2008 166 LHMD----GA-RLAN--ALVALGVALKTIKSYVDSVSFCLTKGGG---APVGAIVFGNRDFAKRARRWRK----RAGGLM 231 (342)
T ss_pred eeec----hH-HHHH--HHHHcCCCHHHHHhhCCEEEEecccCCc---ceeeeEEEcCHHHHHHHHHHHH----HhcccH
Confidence 9999 44 4421 222222 23476654 67654 6777775 68888876653211 233334
Q ss_pred CccHHHHHHHHHHHHHhcChhhH-HhHHHH--HHHHHHHHHHHHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCch
Q 002941 727 SAHALGCAAAAKSIKWFKDPQTN-HNIIPE--RRILRELWDLELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 727 ~~~pla~AAalAaL~~l~~~~l~-~~l~~~--~~~l~~~l~~~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
.-.-+-.|+++..|+ +.-|+ ....++ +++|.+ .+...|.+.- ....-.++.+.+.+..
T Consensus 232 ~k~r~laA~~~~~l~---~~~~~~~~~Han~mA~~La~--------~~~~~~G~~~~~~~~tN~vf~~l~~~~------- 293 (342)
T COG2008 232 RKARFLAAQGLYALE---DDVWRLAADHANAMAARLAE--------GLEAKPGVKLAFPVETNMVFVRLPESA------- 293 (342)
T ss_pred hhhhHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH--------hhhhcCCceeccCCcccEEEEECChHH-------
Confidence 333344444555444 32121 111222 344433 3332332221 1245567777665431
Q ss_pred HHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.........+++.|++..+.+..+||..+..+++++||+++..+++.+
T Consensus 294 i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 IEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred HHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 123444556677888777766789999999999999999998887654
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-11 Score=134.56 Aligned_cols=283 Identities=12% Similarity=0.063 Sum_probs=174.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
|+.+...+|.++|++..+.. .++|+.+++++++...++++. . . .+|+..+-+|...
T Consensus 37 Yp~~~~~~lr~~ia~~~~~~-~~~I~it~Gs~~~l~~~~~~~-~---------~-------------~~vv~~~P~y~~y 92 (332)
T PRK06425 37 YPEISYTDIEDQIKIYTQGL-KIKVLIGPGLTHFIYRLLSYI-N---------V-------------GNIIIVEPNFNEY 92 (332)
T ss_pred CcCcCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHHHh-C---------C-------------CcEEEeCCChHHH
Confidence 45566789999999988754 468999999999988877532 1 1 2477778887776
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
...+...+. ..+++|... + ..|
T Consensus 93 ~~~~~~~G~-------------------------------~v~~vp~~~------------------~--~~~------- 114 (332)
T PRK06425 93 KGYAFTHGI-------------------------------RISALPFNL------------------I--NNN------- 114 (332)
T ss_pred HHHHHHcCC-------------------------------eEEEEeCCc------------------c--cCc-------
Confidence 444333211 111122000 0 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
. +.++. .+.-+.+++.| ++..|... +.+.+++|.++|++||+++|.||++..|...+..-.....+
T Consensus 115 -~----~~l~~------~~~k~v~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~ 180 (332)
T PRK06425 115 -P----EILNN------YNFDLIFIVSP--DNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNR 180 (332)
T ss_pred -H----HHHhh------cCCCEEEEeCC--CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhc
Confidence 0 12221 12235567788 78999654 77889999999999999999999998874323111112222
Q ss_pred CCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 680 CVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 680 v~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
-.+.++ +|||.++ .| +.+|++++++++++.+... ...+..+.+++++ +.....+.+.+++++.
T Consensus 181 ~~~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~--------~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~ 247 (332)
T PRK06425 181 SYGNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKI--------TEPWSVCDPAIDF----IRSIDLDYVAKHSLDI 247 (332)
T ss_pred cCCCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHc--------CCCCccCHHHHHH----HHHhhhHHHHHHHHHH
Confidence 224444 7899998 88 8999999999999988641 1223333333222 2211122233344444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-------CEEE
Q 002941 756 RRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIY 827 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------~~lr 827 (863)
.+..++.+ .+.+.+++ +..+ ...|.++.+.+. . +.++++.|.++||.++|.. +.+|
T Consensus 248 ~~~~r~~l----~~~L~~~g-~~~~~~~~g~f~~~~~~--~---------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iR 311 (332)
T PRK06425 248 MENERSYL----INNLEAMG-FRAAGDPSANFITFMIP--D---------AHDFYSYLLKNGILVRLLDDYECLGEQYIR 311 (332)
T ss_pred HHHHHHHH----HHHHHHCC-CEECCCCCceEEEEEcC--C---------HHHHHHHHHHCCeEEEECCCCCCCCCCEEE
Confidence 44444433 33344443 2222 356778777764 2 4578889999999998741 4788
Q ss_pred EecCCCCcHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l 850 (863)
++ ..++++.+.++++|++.+
T Consensus 312 is---~~~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 312 IA---IRRRSFNIKLVNALRNFL 331 (332)
T ss_pred EE---eCCHHHHHHHHHHHHHHh
Confidence 86 567889999999998764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-11 Score=134.23 Aligned_cols=348 Identities=11% Similarity=0.018 Sum_probs=196.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+.+|+..|.. .++ .+|.+.+++.+.+++.. .+....+..+....+++.+.+..+.. ..+.+.+++++++|+..+
T Consensus 34 ~~i~l~~g~p--~~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 34 SIVDLTVGEP--DFD--TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CEEEcCCCCC--CCC--CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 4555554432 233 36889999998886422 11112233355667777777655531 135799999999999998
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.... .| ..|+..+.+|.+.........+.
T Consensus 110 ~~~~~~---------~g------------d~vl~~~p~y~~y~~~~~~~~~~---------------------------- 140 (402)
T PRK06107 110 LMATLE---------AG------------DEVIIPAPYWVSYPDMVLANDGT---------------------------- 140 (402)
T ss_pred HHHhcC---------CC------------CEEEEecCCCcCHHHHHHHcCCE----------------------------
Confidence 864310 12 46777777666543221111000
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
...++.+... -|. -+ .+.+++.+. ++..+.++..| ++..|. +
T Consensus 141 -~~~v~~~~~~-----------------~~~--~~--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~-~ 182 (402)
T PRK06107 141 -PVIVACPEEQ-----------------GFK--LT--------PEALEAAIT-------PRTRWLILNAP--SNPTGA-V 182 (402)
T ss_pred -EEEecCCccc-----------------CCC--CC--------HHHHHhhcC-------cCceEEEEECC--CCCCCc-C
Confidence 0001111000 000 01 133444442 23345566667 678884 5
Q ss_pred CCHHHHHHHHHHHHHc-CCeEEEecccccccccCCc-chhhhc--CCCCcEE---EeccccC-CCCCCceeeeccHHHHH
Q 002941 638 VDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVE-TTADLL--GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~-gilLI~DEV~TGfGRtG~~-~a~e~~--gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
.+.+-++++.++|++| |+++|+||++..+...+.. ...... +....++ .|||.++ .| +.+|++++++++.+
T Consensus 183 ~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~ 261 (402)
T PRK06107 183 YSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIA 261 (402)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc-cceeeeecCHHHHH
Confidence 5788899999999998 9999999999766433421 111111 1223455 4589997 78 89999999999999
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... ....+.+.+.++.+++.+.|+- .+.+.++..+..+..++.+ .+.+++++.+...... |.++.
T Consensus 262 ~~~~~------~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~----~~~L~~~~g~~~~~p~gg~~~~ 329 (402)
T PRK06107 262 AINKL------QSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYA----LALLNAIPGLSCLVPDGAFYLY 329 (402)
T ss_pred HHHHH------HHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHH----HHHHhcCCCCcccCCCcceEEe
Confidence 87641 1223456778888888777741 2334444443333333322 3344445444333444 45555
Q ss_pred EEEccC-C--cCCCCchHHHHHHHHH-HHHCCcEEEec---C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAA-G--CNAGYGSLYAASLLKK-LREDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~-~--~~~~~~~~~~~~l~~~-l~e~GV~~~p~---g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+..- + ............++.. +.++||.+.|+ | +.+|++ +..++|++++++++|.+.+.++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis--~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 330 VNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLS--IATSLETLEEACARIERAVAAL 401 (402)
T ss_pred eecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHhc
Confidence 665311 0 0000000013445544 45789999875 2 578875 4468999999999998887654
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-10 Score=133.02 Aligned_cols=344 Identities=12% Similarity=0.031 Sum_probs=199.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc--CCCCC----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPENV----YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~--~~~~~----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|||..+ .|- -.+.|.+|+.+.+..+.... ...+. .+...++.++|+++++....+.|+|++++++|
T Consensus 34 iyLd~a~------~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 34 VYLDNAA------TSQ-KPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred EEeeCcc------ccC-CCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 5777533 233 35778889888776553211 01011 12245777888888875312589999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++.. ...... .| .+|++....|++.......+.. .. +.
T Consensus 107 l~~i~~~~-~~~~~~----~g------------d~vl~~~~~~~s~~~~~~~~a~---~~-----------g~------- 148 (424)
T PLN02855 107 INLVAYTW-GLANLK----PG------------DEVILSVAEHHSNIVPWQLVAQ---KT-----------GA------- 148 (424)
T ss_pred HHHHHHHh-hhhcCC----Cc------------CEEEECCCccHHHHHHHHHHHH---Hc-----------CC-------
Confidence 98887642 100000 11 4678777766553211111100 00 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++..... .-| .+.+++.+. + ++.+|++.-+ ++..
T Consensus 149 ----~v~~v~~~~~~---------------------~~~--------~~~l~~~i~-------~-~t~lv~i~~~-~n~t 186 (424)
T PLN02855 149 ----VLKFVGLTPDE---------------------VLD--------VEQLKELLS-------E-KTKLVATHHV-SNVL 186 (424)
T ss_pred ----EEEEEecCCCC---------------------CcC--------HHHHHHHhc-------c-CceEEEEeCc-cccc
Confidence 00111111000 001 234555553 1 3455566655 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++| ++|.. ..-.+. ..+|+++ +.| +.|. .-+|++.+++++.+.+
T Consensus 187 G~~~~----~~~I~~l~~~~g~~vivD~a~-~~g~~--~~~~~~--~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~~~~~ 255 (424)
T PLN02855 187 GSILP----VEDIVHWAHAVGAKVLVDACQ-SVPHM--PVDVQT--LGADFLVASSHK-MCGP-TGIGFLWGKSDLLESM 255 (424)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEhhh-hcCCc--CCCchh--cCCCEEEeeccc-ccCC-CccEEEEEchhhhhcC
Confidence 98887 789999999999999999999 45432 112222 3478875 479 4332 2378899999887765
Q ss_pred hcCC-cc----cee---------eccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 712 VGDS-KL----KAL---------LHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 712 ~~~~-~~----~~~---------~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.... .. ..+ ...+ ..+.+..+.++..++++.+.+.+ .+++.+....+.+.+.+. +++.+.
T Consensus 256 ~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~----L~~~~g 330 (424)
T PLN02855 256 PPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIG-MDRIHEYEVELGTYLYEK----LSSVPG 330 (424)
T ss_pred CCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH----HhcCCC
Confidence 4210 00 000 0001 11245667777888888875543 456666666666655433 334443
Q ss_pred eeEe-------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------------CCEEEEecCCCCc
Q 002941 777 VQRV-------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------------GNVIYLMCGPCSS 835 (863)
Q Consensus 777 v~~v-------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------------g~~lr~~ppl~~t 835 (863)
+.-+ ..++.++.+.+.... ...+.+.|.++ ||.++.. .+.+|+++....|
T Consensus 331 ~~i~~~~~~~~~~r~~~v~~~~~~~~---------~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt 401 (424)
T PLN02855 331 VRIYGPKPSEGVGRAALCAFNVEGIH---------PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNT 401 (424)
T ss_pred EEEeCCCcccccCcccEEEEEECCcC---------HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCC
Confidence 3211 123456777664321 45688888877 9998742 2579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l~~ 855 (863)
++||++++++|+++++.+.+
T Consensus 402 ~~di~~l~~~l~~~~~~~~~ 421 (424)
T PLN02855 402 KEEVDAFIHALKDTIAFFSS 421 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-11 Score=134.41 Aligned_cols=336 Identities=10% Similarity=-0.023 Sum_probs=189.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CC-CeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WA-SRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~-~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.. .++ ..+.+.+++.+.+.....+....+..+....+++.+.+..+.. .. +.++.++++++|+..
T Consensus 30 ~~i~l~~~~p--~~~--~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~ 105 (396)
T PRK09147 30 PPISLSIGEP--KHP--TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFA 105 (396)
T ss_pred CeEecCCCCC--CCC--CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHH
Confidence 6777766442 343 3578888888766543222211222344555666665443411 02 379999999999988
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| |. ...|++..-+|.+....+...+
T Consensus 106 ~~~~l~~-----~~---~~----------gd~vlv~~P~y~~~~~~~~~~g----------------------------- 138 (396)
T PRK09147 106 FAQTVID-----RD---GP----------GPLVVCPNPFYQIYEGAALLAG----------------------------- 138 (396)
T ss_pred HHHHHcC-----CC---CC----------CCEEEEcCCCccchHHHHHhcC-----------------------------
Confidence 8876521 10 00 1468888888866432221111
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|-.. ++-|. -| .+.+++.+. .+.-+.+++.| ++..|.+
T Consensus 139 --~~~~~vp~~~---------------~~~~~--~d--------~~~l~~~~~-------~~~k~i~l~nP--~NPTG~~ 182 (396)
T PRK09147 139 --AEPYFLNCDP---------------ANNFA--PD--------FDAVPAEVW-------ARTQLLFVCSP--GNPTGAV 182 (396)
T ss_pred --CEEEEeccCc---------------cccCc--cC--------HHHHHHHHh-------hccEEEEEcCC--CCCcCcc
Confidence 0111122000 00000 01 123443332 12234566677 8999965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cch-hh---hcCC--CCcEE---Eecccc-CCCCCCceeeecc
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-AD---LLGC--VPDIA---CYGKLL-TGGVIPLAATLAT 704 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a-~e---~~gv--~PDiv---t~sKgL-ggG~~Pigav~~~ 704 (863)
. +++.+++|.++|++||+++|.||++..|-..+. ... .. ..+. .+.++ +|||.+ ..| +.+|+++++
T Consensus 183 ~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~ 260 (396)
T PRK09147 183 L-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGD 260 (396)
T ss_pred C-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecCC
Confidence 5 788899999999999999999999977632231 111 11 1111 12233 689975 356 899999999
Q ss_pred HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 705 ~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
+++++.+... ....+++.++++.+++.+.+. .+++..+.++..+..++.+.+. +.++ ........|
T Consensus 261 ~~l~~~~~~~------~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----L~~~-~~~~~p~~g 326 (396)
T PRK09147 261 AALLKKFLLY------RTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPI----LAPV-LDVQLPDAG 326 (396)
T ss_pred HHHHHHHHHH------hhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHH----HHHh-cCCCCCCee
Confidence 9999887631 112345667777777777663 3333444444333334433322 2222 101123457
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.++.+++. .. ...++..|+ ++||.+.|+ .+.+|+. ++.+++++++++++|.+.+
T Consensus 327 ~f~~~~~~-~~---------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 327 FYLWAKVP-GD---------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIA--LVAPLAECVEAAERIVDFC 394 (396)
T ss_pred EEEEEECC-CC---------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHh
Confidence 78878875 11 345777775 689999763 1467775 3457888999998888765
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-11 Score=132.97 Aligned_cols=322 Identities=15% Similarity=0.107 Sum_probs=189.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+.. +.+.++ -.|.+.+|+.+.+..+.. |..+...+|.+.|+++.+-+ .+.+++++++++++..+++
T Consensus 23 ~~i~l~~--~~n~~~--~~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~aia~~~~v~-~~~I~it~G~~~~i~~~~~ 92 (360)
T PRK07392 23 AILDFSA--SINPLG--PPESVIAAIQSALSALRH-----YPDPDYRELRLALAQHHQLP-PEWILPGNGAAELLTWAGR 92 (360)
T ss_pred cEEEeCC--cCCCCC--CCHHHHHHHHHHHHHhhc-----CCCcCHHHHHHHHHHHhCcC-hhhEEECCCHHHHHHHHHH
Confidence 4667664 234566 468999998887765322 22222346667777766433 3679999999998887766
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . .| ..|++..-+|.+....+...+.
T Consensus 93 ~l-~---------~g------------~~vlv~~P~y~~~~~~~~~~g~------------------------------- 119 (360)
T PRK07392 93 EL-A---------QL------------RAVYLITPAFGDYRRALRAFGA------------------------------- 119 (360)
T ss_pred Hh-C---------CC------------CeEEEECCCcHHHHHHHHHcCC-------------------------------
Confidence 43 1 11 4688888888776443322211
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... +..+. .+..+ .+.+++. .......+++.| ++..|.+.+
T Consensus 120 ~~~~v~~~~---------------~~~~~--~~~~~-----~~~~~~~--------~~~~~~~~l~nP--~NPTG~~~~- 166 (360)
T PRK07392 120 TVKELPLPL---------------DQPSP--GLTLR-----LQTLPPQ--------LTPNDGLLLNNP--HNPTGKLWS- 166 (360)
T ss_pred eEEEEeccc---------------ccCCc--ccccC-----HHHHHHh--------ccCCCEEEEeCC--CCCCCCCcC-
Confidence 011111000 00000 00000 1112211 123456677888 899998776
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.++|.++++++++ +|+||++..|...+..-. ....+-.+.++ +|||.++ .| +++|++++++++++.+...
T Consensus 167 ---~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~ 241 (360)
T PRK07392 167 ---REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQW 241 (360)
T ss_pred ---HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhh
Confidence 4567888999985 666999998854443111 11222234444 6799998 88 8999999999999887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
...++.+.+++.++.+.|+ +..+.+++++..+..++.+ .+.+.+.+.+....+.|.++.+.+..+
T Consensus 242 --------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~~~~~~~~~~~~fl~~~~~~~ 306 (360)
T PRK07392 242 --------RDPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREAL----FQGLASLPGLTPLPSAANFLLVQSQGS 306 (360)
T ss_pred --------CCCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHH----HHHHHhCCCcEECCCCCCEEEEEcCCC
Confidence 1245678888888887775 4555555554444444433 344445554433445677777766421
Q ss_pred CcCCCCchHHHHHHHHHH-HHCCcEEEecC-------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKL-REDGVYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..+++..+ .++||++.|+. +.+|+. ..+.++.+++.++|++.+
T Consensus 307 ----------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~---~~~~~~~~~l~~al~~~~ 357 (360)
T PRK07392 307 ----------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVA---VRTEAENQRLLEALAAIL 357 (360)
T ss_pred ----------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 45677765 46799998741 578886 334555566666665544
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-11 Score=135.18 Aligned_cols=335 Identities=16% Similarity=0.120 Sum_probs=190.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCCC-C-CeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~~-~-~~v~f~~SGSeAvE~ 476 (863)
..+|+..|.. .++ .+|.+.+++.+.++.... +....+..+....+++.+.+..+... . +.++++++|++|+..
T Consensus 31 ~~i~l~~g~~--~~~--~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 31 GAINLSQGFP--DFD--GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CEEEecCCCC--CCC--CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 4566665532 233 368888888887764211 11122233456678888776655320 1 268999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| .+|+...-+|-+.... +...|
T Consensus 107 ~~~~~~~---------~g------------d~Vli~~p~y~~~~~~-~~~~g---------------------------- 136 (386)
T PRK09082 107 AILALVR---------PG------------DEVIVFDPSYDSYAPA-IELAG---------------------------- 136 (386)
T ss_pred HHHHHcC---------CC------------CEEEEeCCCchhhHHH-HHHcC----------------------------
Confidence 8875521 12 4677777666553221 11111
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...+++|... +.+ .-| .+.+++.+. + ++.+|++... ++..|..
T Consensus 137 --~~~~~~~~~~----------------~~~--~~d--------~~~l~~~~~-------~-~~~~v~l~~p-~NPtG~~ 179 (386)
T PRK09082 137 --GRAVRVALQP----------------PDF--RVD--------WQRFAAAIS-------P-RTRLIILNTP-HNPSGTV 179 (386)
T ss_pred --CEEEEEecCc----------------ccc--cCC--------HHHHHHhcC-------c-cceEEEEeCC-CCCCCcC
Confidence 0011111000 000 001 133444442 1 3444555443 7888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc--chhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
. +++-+++|.++|++||+++|+||++..+-..+.. ......+..+.++ +|||.++ .| +.+|++++++++++.
T Consensus 180 ~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~ 257 (386)
T PRK09082 180 W-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAE 257 (386)
T ss_pred C-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHHH
Confidence 5 6778999999999999999999999765332321 1112223333333 6799996 67 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~i 789 (863)
+... .....++.+++++.++.+.|+. .+++.+++++..+..++.+.+. +.++. +..... -|.++.+
T Consensus 258 ~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~----L~~~~-~~~~~~~g~~~~~~ 324 (386)
T PRK09082 258 FRKV------HQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAA----LANSR-FKLLPCEGTYFQLV 324 (386)
T ss_pred HHHH------HhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHH----HHhCC-CcccCCCeeEEEEE
Confidence 7642 1223456677777766655542 3444445544444444444333 33332 222223 3556667
Q ss_pred EEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecC---------CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLG---------NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g---------~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.+.. . ....+++..| .++||++.|.. +.+|+.. ..+++++++.+++|.+
T Consensus 325 ~~~~~~---~---~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~--~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 325 DYSAIS---D---LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF--AKQEETLDAAAERLCQ 385 (386)
T ss_pred eccccC---C---CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHhh
Confidence 775310 0 0245677766 57899997631 4688864 4578888888888754
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-10 Score=131.94 Aligned_cols=337 Identities=12% Similarity=0.035 Sum_probs=188.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-------ChHHHHHHHHHHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~p~~~~~~v~f~~SGSe 472 (863)
-|||..+ .+- -++.|.+|+.+.+....... .... .+...++.++|+++++.+ .+.++|+++|++
T Consensus 5 ~yld~aa------~~~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~ 75 (402)
T TIGR02006 5 IYLDYAA------TTP-VDPRVAEKMMPYLTEKFGNP-ASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATE 75 (402)
T ss_pred EEeeCCc------CCC-CCHHHHHHHHHHHHhcCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHH
Confidence 6888654 222 47899999988775432111 1011 133556678888888753 358999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|+..+++... .+.. ++ ..+||+... .|.+...+...... .+ .
T Consensus 76 a~~~~l~~l~-~~~~------~~----------g~~Vi~~~~-~h~s~~~~~~~~~~---~g-----------~------ 117 (402)
T TIGR02006 76 SNNLAIKGIA-HFYK------SK----------GNHIITSKT-EHKAVLDTCRYLER---EG-----------F------ 117 (402)
T ss_pred HHHHHHHHHH-Hhhc------CC----------CCEEEECCC-ccHHHHHHHHHHHh---cC-----------C------
Confidence 9999998763 2211 10 145655554 45543333211000 00 0
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
.+..++..... ..| .+.+++.+. +++.+|++..+ ++.
T Consensus 118 -----~v~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~lv~v~~~-~n~ 154 (402)
T TIGR02006 118 -----EVTYLPPKSNG---------------------LID--------LEELKAAIR--------DDTILVSIMHV-NNE 154 (402)
T ss_pred -----EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCCEEEEEECC-CcC
Confidence 00111111000 001 133444442 23567777776 888
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~ 710 (863)
.|...+ +++|.++|++||+++++|++|+ +|... ++..+..+|++++| |.+| . ..+|+++++++....
T Consensus 155 tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~----~~~~~~~~D~~~~s~~K~~g-p-~G~G~l~~~~~~~~~ 223 (402)
T TIGR02006 155 IGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP----INVNELKVDLMSISGHKIYG-P-KGIGALYVRRKPRVR 223 (402)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccccCCCEEEEehhhhcC-C-CceEEEEEccCCCCC
Confidence 998876 8999999999999999999994 54331 12224568999998 9654 2 347888888764443
Q ss_pred hhcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-----cccc
Q 002941 711 FVGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-----VALG 784 (863)
Q Consensus 711 l~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-----rg~G 784 (863)
+............ ...+.+..++++..++++.+++ + .+...+..+.+.+.+.+. ++..+.+.-. +..+
T Consensus 224 ~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~----l~~~~~v~~~~~~~~~~p~ 297 (402)
T TIGR02006 224 LEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE-E-MAQDTAHVLALRDRLLNG----IKSIEEVYLNGDLEHRVPG 297 (402)
T ss_pred CCceecCCCccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHH----HhcCCCEEEeCCccccCCC
Confidence 3210000000001 1123456667777788888754 2 445555666666655443 3444433211 1111
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe------------------------cCCEEEEecCCCCcHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------------------LGNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p------------------------~g~~lr~~ppl~~t~eeid 840 (863)
.+.+.|.... ...+...+ +|+.++. .+..+|+++...+|++|||
T Consensus 298 -~~~v~f~~~~---------~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid 365 (402)
T TIGR02006 298 -NLNVSFNYVE---------GESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEID 365 (402)
T ss_pred -eEEEEEeCcC---------HHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHH
Confidence 1123333211 12233332 3443321 1367899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEFDK 855 (863)
Q Consensus 841 ~~v~~L~~~l~~l~~ 855 (863)
++++.|.++++.++.
T Consensus 366 ~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 366 YAVKLVKSAIDKLRE 380 (402)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877643
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-11 Score=133.58 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=118.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~ 696 (863)
++.+|++.-. .+..|...+ +++|.++|++||+++|+||++. +|.. .+....+| .|++ +++|.++++ .
T Consensus 139 ~~~lv~l~~p-~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~-~ 207 (361)
T cd06452 139 PPALALLTHV-DGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELG--ADFIVGSGHKSMAAS-A 207 (361)
T ss_pred CceEEEEECC-CCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcC--CCEEEecCCccccCC-C
Confidence 3445555443 677786654 8899999999999999999994 4432 23333444 3655 568999877 5
Q ss_pred CceeeeccHHHHHhhhcCCccce----eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 697 PLAATLATNAVFDSFVGDSKLKA----LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~----~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
++|++++++++++.+........ ...+.| .++..+++++++++.+.+ ..+.+.+..+ ..+ .+.+.++
T Consensus 208 ~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~--~~~~~~~~~~-~~~----~l~~~L~ 278 (361)
T cd06452 208 PIGVLATTEEWADIVFRTSQMFKIKEVELLGCT--LRGAPLVTLMASFPHVKE--RVKRWDEEVE-KAR----WFVAELE 278 (361)
T ss_pred CeEEEEECHHHHHHHhccccccccceeeeeccc--cCchHHHHHHHHHHHHHH--HHHHHHHHHH-HHH----HHHHHHh
Confidence 89999999999998754221100 011112 122345555666665421 1122211111 112 2234445
Q ss_pred cCCCeeEe---cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 773 SHRTVQRV---VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 773 ~~p~v~~v---rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.+.+.-+ .+...++.++...-............++.+.|+++||+....+ +.+|+. .+-.++|+++.++++|+
T Consensus 279 ~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~-~~g~~~e~~~~l~~al~ 357 (361)
T cd06452 279 KIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLS-TYGLTWEQVEYVVDAFK 357 (361)
T ss_pred cCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEE-ecCCCHHHHHHHHHHHH
Confidence 55433221 2334455555431000000000113468899999999975433 556665 34579999999999998
Q ss_pred HHH
Q 002941 848 QRL 850 (863)
Q Consensus 848 ~~l 850 (863)
+++
T Consensus 358 ~~~ 360 (361)
T cd06452 358 EIA 360 (361)
T ss_pred HHh
Confidence 653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-11 Score=134.57 Aligned_cols=215 Identities=13% Similarity=0.130 Sum_probs=130.9
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCC-CcEE--EeccccC-CCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCV-PDIA--CYGKLLT-GGV 695 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~-PDiv--t~sKgLg-gG~ 695 (863)
+.+++.| ++..|.+. +.+-+++|.++|++||++||.||++..+-..+..-.+ +..+.. .+|+ +|||.++ .|
T Consensus 182 ~i~l~nP--~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G- 257 (410)
T PRK06290 182 LLYLNYP--NNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG- 257 (410)
T ss_pred EEEEECC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCch-
Confidence 4444558 79999655 7888999999999999999999999766322321111 111111 1233 7899996 67
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+.+|++++++++++.+... ....+.+.+.++.+++.++|+ ++++.+++++..+..++.+. +.+.+++
T Consensus 258 lRiG~ii~~~~l~~~l~~~------~~~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~~~~l~----~~L~~~g 324 (410)
T PRK06290 258 WRLAFVVGNELIVKAFATV------KDNNDSGQFIAIQKAGIYALD---HPEITEKIREKYSRRLDKLV----KILNEVG 324 (410)
T ss_pred hheEeEEeCHHHHHHHHHH------HhccccCCcHHHHHHHHHHhh---CcHHHHHHHHHHHHHHHHHH----HHHHhCC
Confidence 8999999999999887641 111223334456666666664 44455555444444444333 3334443
Q ss_pred CeeEecccce-EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE-Eec---CCEEEEecCC-CCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGT-LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RPL---GNVIYLMCGP-CSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vrg~Gl-~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~-~p~---g~~lr~~ppl-~~t~eeid~~v~~L~~~ 849 (863)
+......|. ++.+.+.+.. ..........++++.|+++|+++ .|. ++.+|++... ..++|+.++++++|.+.
T Consensus 325 -~~~~~p~g~f~l~v~lp~~~-~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~ 402 (410)
T PRK06290 325 -FKAEMPGGTFYLYVKAPKGT-KSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRR 402 (410)
T ss_pred -CeecCCCeeeEEEEECCCcc-ccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHH
Confidence 222334444 4456665321 00000012567899999886544 453 3678886443 24889999999999999
Q ss_pred HHHHH
Q 002941 850 LEEFD 854 (863)
Q Consensus 850 l~~l~ 854 (863)
|..++
T Consensus 403 ~~~~~ 407 (410)
T PRK06290 403 LSDVE 407 (410)
T ss_pred Hhhcc
Confidence 87764
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-11 Score=135.35 Aligned_cols=336 Identities=10% Similarity=0.058 Sum_probs=191.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||..+ .|. -.+.+.+|+.+.++.......... ..+...++.++|+++++.+ .+.++|++++++|+
T Consensus 2 ~yld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~ 73 (381)
T PRK02948 2 IYLDYAA------TTP-MSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESN 73 (381)
T ss_pred EeccCCC------CCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 4777432 344 468899999887765422111101 1234567778888888743 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
..+++.+++.+ . +. ...|+. ....|.+.......... . +.
T Consensus 74 ~~~~~~~~~~~----~---~~----------g~~vv~-~~~~h~s~~~~~~~~~~---~-----------g~-------- 113 (381)
T PRK02948 74 YLAIQSLLNAL----P---QN----------KKHIIT-TPMEHASIHSYFQSLES---Q-----------GY-------- 113 (381)
T ss_pred HHHHHHHHHhc----c---CC----------CCEEEE-CCcccHHHHHHHHHHHh---C-----------CC--------
Confidence 99988763211 0 10 134444 44555543332211100 0 00
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++..... ..| .+.+++.+. ++...|+++-+ +++.|
T Consensus 114 ---~v~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~lv~~~~~-~n~tG 152 (381)
T PRK02948 114 ---TVTEIPVDKSG---------------------LIR--------LVDLERAIT--------PDTVLASIQHA-NSEIG 152 (381)
T ss_pred ---EEEEEeeCCCC---------------------CCC--------HHHHHHhcC--------CCCEEEEEECC-cCCcE
Confidence 00011110000 011 234554442 13446666655 78899
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHH-HHhh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV-FDSF 711 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i-~~~l 711 (863)
.+.+ +++|.++|++||+++|+|++| +||..+. ..+.+ ..|++ +++|.+|. .-+|++++++++ +..+
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~-~~g~~~~--~~~~~--~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~ 221 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQ-TFGKLPI--DVFEM--GIDSLSVSAHKIYGP--KGVGAVYINPQVRWKPV 221 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChh-hcccccc--CcccC--CCCEEEecHHhcCCC--CcEEEEEEcCCCCCCCc
Confidence 8876 789999999999999999988 5764422 22233 36777 45796641 126778777764 1111
Q ss_pred hcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEecc-----cc
Q 002941 712 VGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVA-----LG 784 (863)
Q Consensus 712 ~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~vrg-----~G 784 (863)
..... .... ..++.|+.+.+++.++++.+.+ ..++..+..+.+++++.+.+ .+.+. +. ..+ ..
T Consensus 222 ~~~~~---~~~~~~~~t~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L----~~~~~~v~-~~~~~~~~~~ 291 (381)
T PRK02948 222 FPGTT---HEKGFRPGTVNVPGIAAFLTAAENILK--NMQEESLRFKELRSYFLEQI----QTLPLPIE-VEGHSTSCLP 291 (381)
T ss_pred ccCCC---CCCCcCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----hcCCCCEE-EeCCCccCcC
Confidence 10000 0011 2345788889999999987632 24455555666666554443 33331 22 111 11
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid 840 (863)
.++++.+..-. ...+...|.++||.++.+ ++.+|+++...+|++|+|
T Consensus 292 ~i~~~~~~~~~---------~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~ 362 (381)
T PRK02948 292 HIIGVTIKGIE---------GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQID 362 (381)
T ss_pred CEEEEEeCCCC---------HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHH
Confidence 23333333211 345666788999999841 258999988889999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEFD 854 (863)
Q Consensus 841 ~~v~~L~~~l~~l~ 854 (863)
+++++|.++++.+-
T Consensus 363 ~l~~~l~~~~~~~~ 376 (381)
T PRK02948 363 TTIHALETIGNQFY 376 (381)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876543
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.7e-11 Score=133.38 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=123.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc-CCC---CcEEEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCV---PDIACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~-gv~---PDivt~sKgLg-gG 694 (863)
+.+++.| ++..|.. .+.+-+++|.++|++||+++|+||++..+...+.. .....+ +.. -.+-+|||.+| .|
T Consensus 167 ~v~i~~P--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G 243 (383)
T TIGR03540 167 LMFINYP--NNPTGAV-APLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG 243 (383)
T ss_pred EEEEeCC--CCCcCcc-CCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcc
Confidence 4444557 7888865 47888999999999999999999999766333321 111111 111 22348899996 67
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+..- ....+.+.+.++.+++.++|+. .+++.+.+.+..+..++.+ .+.+.++
T Consensus 244 -lRiG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~----~~~L~~~ 310 (383)
T TIGR03540 244 -WRIGMAVGNADLIAGLGKV------KTNVDSGVFQAIQYAAIAALNG--PQDVVKEIRKIYQRRRDLL----LEALKKI 310 (383)
T ss_pred -ceeeEEeCCHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 8999999999999877631 1112233455666666666642 2344445444444444433 3334444
Q ss_pred CCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
. +..+... |.++.+.+.+.- ....++..|+ ++||.++|. .+.+|+.. ..+++++.+++++
T Consensus 311 ~-~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~ 379 (383)
T TIGR03540 311 G-IDVEKPKATFYVWVPVPEGY--------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVAR 379 (383)
T ss_pred C-CEecCCCcceEEEEECCCCC--------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHH
Confidence 3 2223333 556777775321 2456888775 689999874 25788864 4567777777776
Q ss_pred HH
Q 002941 846 LY 847 (863)
Q Consensus 846 L~ 847 (863)
|.
T Consensus 380 l~ 381 (383)
T TIGR03540 380 IK 381 (383)
T ss_pred Hh
Confidence 64
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-10 Score=129.30 Aligned_cols=323 Identities=15% Similarity=0.088 Sum_probs=181.6
Q ss_pred cHHHHHHHHHHHHhccc-ccCCCCC-----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 418 QIELARDMGYTAARFGH-VMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~-~~~~~~~-----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.+.+.+|+.+.++++.. .....+. .+...++.+.|+++++....+.++|+++|++|+..++...++
T Consensus 13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~-------- 84 (376)
T TIGR01977 13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLK-------- 84 (376)
T ss_pred CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccC--------
Confidence 46899999888877531 1111111 245668888999988743224799999999999887754310
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+|++...+|.+. ...+.... ..+ +. .+..++....+
T Consensus 85 -~g------------d~vl~~~~~~~~~-~~~~~~~~-~~~------------g~-----------~~~~v~~~~~~--- 123 (376)
T TIGR01977 85 -EG------------DHVITTPMEHNSV-ARPLECLK-EQI------------GV-----------EITIVKCDNEG--- 123 (376)
T ss_pred -CC------------CEEEECcchhhHH-HHHHHHHH-HHc------------Cc-----------EEEEEecCCCC---
Confidence 11 4677665554332 21110000 000 00 00001110000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
..| .+.+++.+. .++.+|++..+ ++..|.+.+ +++|.++|+
T Consensus 124 ------------------~~d--------~~~l~~~~~--------~~~~~v~~~~~-~n~tG~~~~----~~~i~~l~~ 164 (376)
T TIGR01977 124 ------------------LIS--------PERIKRAIK--------TNTKLIVVSHA-SNVTGTILP----IEEIGELAQ 164 (376)
T ss_pred ------------------CcC--------HHHHHHhcC--------CCCeEEEEECC-CCCccccCC----HHHHHHHHH
Confidence 011 234555442 23455666554 788898887 789999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHH-HHhhhcCC-cccee-e-----
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV-FDSFVGDS-KLKAL-L----- 721 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i-~~~l~~~~-~~~~~-~----- 721 (863)
+||+++|+|+++ ++|... +..+. ..+|+++++ |.++|. ...|+++++++. +..+.... ..... +
T Consensus 165 ~~~~~livD~a~-~~g~~~--~~~~~--~~~D~~~~s~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T TIGR01977 165 ENGIFFILDAAQ-TAGVIP--IDMTE--LAIDMLAFTGHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSE 238 (376)
T ss_pred HcCCEEEEEhhh-ccCccC--CCchh--cCCCEEEecccccccCC-CCceEEEEcCCcCcCceecCCCcccccccccccc
Confidence 999999999999 565442 11222 347988765 988763 235666666553 11111100 00000 0
Q ss_pred --c-ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-----cccceEEEEEEcc
Q 002941 722 --H-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-----VALGTLCAIELQA 793 (863)
Q Consensus 722 --~-~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-----rg~Gl~~~iel~~ 793 (863)
. ....+.+...+++..++|+.+.+.+ .+++.++...+.+.+.+. +.+.+.+.-+ ...+.++.+.+..
T Consensus 239 ~~~r~~~~t~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 313 (376)
T TIGR01977 239 LPDRFESGTLNTPGIAGLNAGIKFIEKIG-IANIAKKECMLTEKLLNG----LREINKVKIYGPADPANRVGVVSFTVEG 313 (376)
T ss_pred chhhccCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH----HhcCCCeEEeCCCCccccCCeEEEEECC
Confidence 0 0011345667777888899886543 234444444555444333 2333322111 1135566666642
Q ss_pred CCcCCCCchHHHHHHHHHHHHC-CcEEEec---------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLRED-GVYMRPL---------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~---------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.. ...+.+.|.++ ||.++.. ...+|+.+...+|++|++.++++|++
T Consensus 314 ~~---------~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 314 ID---------SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred CC---------HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 21 45688888887 8888642 26899999999999999999999865
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-11 Score=133.58 Aligned_cols=301 Identities=14% Similarity=0.110 Sum_probs=174.6
Q ss_pred HHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccc
Q 002941 423 RDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502 (863)
Q Consensus 423 ~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~ 502 (863)
+|+.+.+..-.+ +..+...++.++|+++++. +.+++++||++|++.+++.. + . + .
T Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~---~~~~~~~sgt~al~~~l~~l-~-~----~--~--------- 57 (352)
T cd00616 3 EAVEEVLDSGWL-----TLGPKVREFEKAFAEYLGV---KYAVAVSSGTAALHLALRAL-G-I----G--P--------- 57 (352)
T ss_pred HHHHHHHHcCCc-----cCCHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C-C----C--C---------
Confidence 445555544322 2356788999999999983 57889999999999999865 1 0 0 1
Q ss_pred cccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhccccccccc
Q 002941 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFC 581 (863)
Q Consensus 503 ~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~ 581 (863)
..+||....+||+........+.. +..++... .+
T Consensus 58 ---gd~vl~~~~~~~~~~~~~~~~g~~-----------------------------~~~~~~~~~~~------------- 92 (352)
T cd00616 58 ---GDEVIVPSFTFVATANAILLLGAT-----------------------------PVFVDIDPDTY------------- 92 (352)
T ss_pred ---CCEEEeCCcchHHHHHHHHHcCCe-----------------------------EEEEecCCCcC-------------
Confidence 157999999888754322211000 00011110 00
Q ss_pred cccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEec
Q 002941 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (863)
Q Consensus 582 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DE 661 (863)
..| .+.+++.+. .++.+|++..+ .|...+ +++|.++|++||+++|+|+
T Consensus 93 --------~~d--------~~~l~~~i~--------~~~~~v~~~~~----~G~~~~----~~~i~~l~~~~~i~li~D~ 140 (352)
T cd00616 93 --------NID--------PELIEAAIT--------PRTKAIIPVHL----YGNPAD----MDAIMAIAKRHGLPVIEDA 140 (352)
T ss_pred --------CcC--------HHHHHHhcC--------cCCeEEEEECC----CCCcCC----HHHHHHHHHHcCCeEEEEC
Confidence 011 133444442 24566666553 344443 8999999999999999999
Q ss_pred ccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhc---CCcc------ceeecccCCC
Q 002941 662 VFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL------KALLHGHSYS 727 (863)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~---~~~~------~~~~~~~T~~ 727 (863)
+|+ +|.. +.....|...|+.++| |.+++| +.|+++++ +++++.+.. .... .....+.++.
T Consensus 141 a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T cd00616 141 AQA-LGAT---YKGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYR 214 (352)
T ss_pred CCC-CCCe---ECCEEcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccC
Confidence 995 4432 1112234446888876 999654 45667665 577665431 1100 0012234556
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---c---ccceEEEEEEccCCcCCCCc
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---V---ALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---r---g~Gl~~~iel~~~~~~~~~~ 801 (863)
.+++.++.++..++.++ .+.++.+++.+++.+. +.+.+.+.-+ . ....++.+.+....
T Consensus 215 ~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~--------L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------ 278 (352)
T cd00616 215 LSEIQAAIGLAQLEKLD--EIIARRREIAERYKEL--------LADLPGIRLPDVPPGVKHSYHLYVIRLDPEA------ 278 (352)
T ss_pred cCHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHH--------hcCCCCccCCCCCCCCceeeEEEEEEECCcC------
Confidence 77888888887776552 2334444444444443 2333322111 1 12345566554210
Q ss_pred hHHHHHHHHHHHHCCcEEEec----------------------------CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 802 ~~~~~~l~~~l~e~GV~~~p~----------------------------g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
......+.+.|.++||.++.. ...+++.+....|++||+.++++|+
T Consensus 279 ~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 279 GESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 012567888999999977521 0467776666789999999998873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-10 Score=130.27 Aligned_cols=307 Identities=14% Similarity=0.128 Sum_probs=182.8
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.++ -.+.+.+|+.+.+..... ..+..+...+|.+.++++.+.. .+.++++++.++|+..+++...+
T Consensus 33 ~~~--~p~~~~~a~~~~~~~~~~---~~y~~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~l~~-------- 98 (351)
T PRK14807 33 PFE--LPEEVIKNIQEIVKSSQV---NIYPDPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLAFIN-------- 98 (351)
T ss_pred CCC--CCHHHHHHHHHHhhcCcc---cCCCCccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHHhcC--------
Confidence 455 368999999887753211 1233344567888888887643 36799998888888877765421
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+|++...+|.+....+... |. ..+.+|..
T Consensus 99 -~g------------d~Vlv~~p~y~~~~~~~~~~-g~------------------------------~~~~v~~~---- 130 (351)
T PRK14807 99 -KG------------DVVIYPHPSFAMYSVYSKIA-GA------------------------------VEIPVKLK---- 130 (351)
T ss_pred -CC------------CEEEEeCCChHHHHHHHHHc-CC------------------------------eEEEeecC----
Confidence 12 56888888887543221111 10 00111100
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA-vIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
+.+ .-| .+.+++.+.. .++.+ ++..| ++..|...+ .+++.++|
T Consensus 131 -------------~~~--~~d--------~~~l~~~~~~-------~~~k~v~l~~p--~NPtG~~~~----~~~l~~l~ 174 (351)
T PRK14807 131 -------------EDY--TYD--------VGSFIKVIEK-------YQPKLVFLCNP--NNPTGSVIE----REDIIKII 174 (351)
T ss_pred -------------CCC--CCC--------HHHHHHHhhc-------cCCCEEEEeCC--CCCCCCCCC----HHHHHHHH
Confidence 000 001 1344555531 13334 44555 788998776 57778888
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCC
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~ 726 (863)
++++.++|+||++..|. |.... ......+.++ +|||.++ .| +++|++++++++++.+.... ..+
T Consensus 175 ~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~--------~~~ 242 (351)
T PRK14807 175 EKSRGIVVVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNLVK--------SPY 242 (351)
T ss_pred HhCCCEEEEeCcchhhc--ccchH-HHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHHcc--------CCC
Confidence 88889999999997762 32111 1112223444 6799997 78 89999999999999886421 123
Q ss_pred CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHH
Q 002941 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 806 (863)
Q Consensus 727 ~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~ 806 (863)
..++++..++.+.|+ +. ..++..+.....++.+ .+.+.+.+.+.-....|.++.+.+.+ ..
T Consensus 243 ~~~~~~q~~~~~~l~---~~-~~~~~~~~~~~~r~~l----~~~l~~~~g~~~~~~~~~~~~i~~~~-----------~~ 303 (351)
T PRK14807 243 NINSLSQVIALKVLR---TG-VLKERVNYILNERERL----IKELSKIPGIKVYPSKTNFILVKFKD-----------AD 303 (351)
T ss_pred CcCHHHHHHHHHHHh---HH-HHHHHHHHHHHHHHHH----HHHHHhCCCcEECcCCccEEEEEcCC-----------HH
Confidence 456777777776665 22 2222222223333333 33344444443334556776676641 45
Q ss_pred HHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 807 SLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 807 ~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+++.|.++||.+++++ +.+|+. ..++++.+.+++.|++.+
T Consensus 304 ~~~~~l~~~gV~v~~~~~~~~~~~~iRis---~~~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 304 YVYQGLLERGILVRDFSKVEGLEGALRIT---VSSCEANDYLINGLKELL 350 (351)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCeEEEE---cCCHHHHHHHHHHHHHhh
Confidence 68888999999998742 568886 346778888888887643
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-10 Score=133.99 Aligned_cols=350 Identities=13% Similarity=0.051 Sum_probs=191.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
.++++..|--.......-.|++.+|+.++++.... +....+..+....+++.+....+.+ ..+.|++++++++|+..
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 66776655322211122357889999888765321 1111122334445555554432211 12579999999999998
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++...+ .| .+|+...-+|......+...+..
T Consensus 133 ~~~~l~~---------~G------------d~Vlv~~P~y~~y~~~~~~~g~~--------------------------- 164 (430)
T PLN00145 133 IMSVLAQ---------PG------------ANILLPRPGYPLYEARAVFSGLE--------------------------- 164 (430)
T ss_pred HHHHhcC---------CC------------CEEEEcCCCCccHHHHHHHcCCE---------------------------
Confidence 8876521 12 46888888887743322211100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.+.. ..|. -| .+.+++.+. +...+.+++.| ++..|.
T Consensus 165 --~~~~~~~~~-----------------~~~~--~d--------~~~l~~~~~-------~~~~~i~i~~P--~NPtG~- 205 (430)
T PLN00145 165 --VRHFDLLPE-----------------RGWE--VD--------LEGVEALAD-------ENTVAMVIINP--NNPCGS- 205 (430)
T ss_pred --EEEeeCCcc-----------------cCCc--CC--------HHHHHHHhC-------cCceEEEEeCC--CCCCCC-
Confidence 001111000 0000 01 234444442 34567888888 688885
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eeccc-cCCCCCCceeeec--cHHHHH
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LTGGVIPLAATLA--TNAVFD 709 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKg-LggG~~Pigav~~--~~~i~~ 709 (863)
+.+.+.+++|.++|++||+++|+||++..|...+..+ ....++-...++ .|||. +..| +.+|++++ ++.+++
T Consensus 206 v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~ 284 (430)
T PLN00145 206 VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIATCDPNGILK 284 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEEecchhhhh
Confidence 5578889999999999999999999998764333211 111122222344 57998 4467 89999987 344332
Q ss_pred ------hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecc
Q 002941 710 ------SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-VVA 782 (863)
Q Consensus 710 ------~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg 782 (863)
.+.. . ...+...+.+..+++.+.|+.- .+++.++..+..+..++.+ .+.+.+++.+.. .+.
T Consensus 285 ~~~~~~~~~~------~-~~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~----~~~L~~~~g~~~~~~P 352 (430)
T PLN00145 285 ETKVVDSIRN------Y-LNISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADIC----YEKIKEIKCITCPHKP 352 (430)
T ss_pred hhHHHHHHHH------H-hcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCcCC
Confidence 2221 0 1112233566777776666521 1344444444444434433 444556665543 244
Q ss_pred cc-eEEEEEEccCCcCCCCchHHHHHHHH-HHHHCCcEEEec---C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 783 LG-TLCAIELQAAGCNAGYGSLYAASLLK-KLREDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 783 ~G-l~~~iel~~~~~~~~~~~~~~~~l~~-~l~e~GV~~~p~---g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.| +++.+.+...... ... ....++. .+.++||++.|+ | +.+|++. ..+++++++++++|.+.+.+..
T Consensus 353 ~ga~y~~v~l~~~~~~-~~~--~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~--~~~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 353 EGSMFVMVKLDLSCLS-GIK--DDMDFCCKLAKEESVVVLPGSALGMKNWLRITF--AIDPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred CeeeEEEeccChhhcC-CCC--CHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHhc
Confidence 45 4445555421000 000 1344554 445779999884 3 7888864 4578889999999988886654
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-10 Score=129.97 Aligned_cols=208 Identities=15% Similarity=0.168 Sum_probs=130.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-ch-hhhcCCCCcE---EEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TT-ADLLGCVPDI---ACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a-~e~~gv~PDi---vt~sKgLg-gG 694 (863)
+.+++.| ++..|.+. +++-+++|.++|++||+++|+||++..|...+.. .. ....+..+.+ -+|||.++ .|
T Consensus 163 lv~~~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 239 (389)
T PRK05957 163 AIVTISP--NNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFAS 239 (389)
T ss_pred EEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCcc
Confidence 4455556 78888655 6778999999999999999999999877333211 11 1111222233 36899997 77
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+... ......+.+.++..++..+|+ +.+++.++..+..+..++.+ .+.+.+.
T Consensus 240 -lRiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~l----~~~L~~~ 306 (389)
T PRK05957 240 -WRIGYMVIPIHLLEAIKKI------QDTILICPPVVSQYAALGALQ--VGKSYCQQHLPEIAQVRQIL----LKSLGQL 306 (389)
T ss_pred -ceeEEEecCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHH----HHHHHhc
Confidence 8999999999999988641 111223345566666666554 12345555444444444433 3334444
Q ss_pred CCe-eEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHH
Q 002941 775 RTV-QRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 775 p~v-~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+.+ ...... |+++.+++.... ...++++.|+ ++||.+.|+ ++.+|+... ..+++++++.++
T Consensus 307 ~~~~~~~~~~gg~~~~~~~~~~~--------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~l~~~~~ 377 (389)
T PRK05957 307 QDRCTLHPANGAFYCFLKVNTDL--------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG-ALQKATAKEGIE 377 (389)
T ss_pred CCCccccCCCeeEEEEEeCCCCC--------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe-cCCHHHHHHHHH
Confidence 432 212233 566667775321 2467888887 589999874 246888632 357889999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|.+.++++
T Consensus 378 ~l~~~~~~~ 386 (389)
T PRK05957 378 RLVQGLKTI 386 (389)
T ss_pred HHHHHHHhh
Confidence 998887764
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-11 Score=133.22 Aligned_cols=200 Identities=10% Similarity=0.016 Sum_probs=124.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc----chhhh-cCCCCcEEEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADL-LGCVPDIACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~----~a~e~-~gv~PDivt~sKgLg-gG 694 (863)
+.+++.| ++..|.+. +.+-+++|.++|++||+++|+||++..|...|.. ..... .+..-.+.+|||.+| .|
T Consensus 169 ~v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 245 (385)
T PRK09276 169 LMFINYP--NNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG 245 (385)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcc
Confidence 4444557 78888654 7888999999999999999999999876332321 11111 111122347899996 67
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+.... ...+.+.+++...++.++|+. .+.+.+++++..+..++.+.+. ++++
T Consensus 246 -lRiG~~i~~~~l~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~----L~~~ 312 (385)
T PRK09276 246 -WRIGFAVGNADLIAGLGKVK------SNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEG----LRKL 312 (385)
T ss_pred -hhheeeeCCHHHHHHHHHHH------hhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHH----HHhC
Confidence 89999999999998876411 111223455566666666642 2445555555555555544333 3333
Q ss_pred CCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
. +.-.... |.++.+.+.... ...+++..|+ ++||++.|+ .+.+|+.. ..+++++.+++++
T Consensus 313 ~-~~~~~~~~~~~~~v~~~~~~--------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~ 381 (385)
T PRK09276 313 G-LEVEPPKATFYVWAPVPKGY--------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEAVER 381 (385)
T ss_pred C-CcccCCCcceEEEEECCCCC--------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHHHHH
Confidence 3 2222333 455667765321 2456788876 579999874 25788864 4577777777777
Q ss_pred HH
Q 002941 846 LY 847 (863)
Q Consensus 846 L~ 847 (863)
|.
T Consensus 382 l~ 383 (385)
T PRK09276 382 IK 383 (385)
T ss_pred Hh
Confidence 64
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-10 Score=135.31 Aligned_cols=220 Identities=13% Similarity=0.034 Sum_probs=133.7
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eecccc-C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-T 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKgL-g 692 (863)
...+.+++.| ++..|.+. +.+.+++|.++|++||+++|.||++..|-..|..+ ....+.-...++ +|||.+ .
T Consensus 204 ~~~~v~i~nP--~NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 204 NTVAMVVINP--NNPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred CcEEEEEeCC--CCCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 4567888999 68888554 78889999999999999999999998863334322 222221112243 679984 4
Q ss_pred CCCCCceeeecc-H-HHH---HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLAT-N-AVF---DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 693 gG~~Pigav~~~-~-~i~---~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
.| +.+|++++. + .++ +.+..- .. ....+.+.+.++.+++.++|+. ..+++.+++++..+..++.+
T Consensus 281 pG-lRiG~~v~~~p~~~~~~~~~~~~~---~~-~~~~~~~~s~~~Q~a~~~~L~~-~~~~~l~~~~~~l~~~r~~l---- 350 (462)
T PLN02187 281 PG-WKIGWIALNDPEGVFETTKVLQSI---KQ-NLDVTPDPATIIQAALPAILEK-ADKNFFAKKNKILKHNVDLV---- 350 (462)
T ss_pred cc-ceeEEEEecCchhHHHHHHHHHHH---HH-hccccCCCCHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH----
Confidence 67 899999983 3 222 233210 00 1112223467888888887763 12345555555554444444
Q ss_pred HHHHhcCCCeeE-ecc-cceEEEEEEccCCcCCCCchHHHHHH-HHHHHHCCcEEEecC-----CEEEEecCCCCcHHHH
Q 002941 768 IQQISSHRTVQR-VVA-LGTLCAIELQAAGCNAGYGSLYAASL-LKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVC 839 (863)
Q Consensus 768 ~~~~~~~p~v~~-vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l-~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eei 839 (863)
.+.+++++.+.. ... -|.++.+.+.... ..... ...++ ...+.++||++.|+. +.+|+. +...++.+
T Consensus 351 ~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~-~~~~~--~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis--~~~~~e~l 425 (462)
T PLN02187 351 CDRLKDIPCVVCPKKPESCTYLLTKLELSL-MDNIK--DDIDFCVKLAREENLVFLPGDALGLKNWMRIT--IGVEAHML 425 (462)
T ss_pred HHHHhhCCCCcCCCCCCEeEEEEeecChhh-CCCCC--CHHHHHHHHHhhCCEEEECccccCCCCeEEEE--eCCCHHHH
Confidence 334444554322 123 3567767664210 00000 12234 445678999999742 678885 45678999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFDK 855 (863)
Q Consensus 840 d~~v~~L~~~l~~l~~ 855 (863)
++++++|.+++++..+
T Consensus 426 ~~al~rL~~~l~~~~~ 441 (462)
T PLN02187 426 EDALERLKGFCTRHAK 441 (462)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999876553
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-10 Score=129.30 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=131.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPL 698 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pi 698 (863)
..+++-| .+..|...+ +++|.++|+++|+++|+|.++ +||.. ...... ..+|+++ +.|.+.|. ..+
T Consensus 134 ~v~~~~~--~~~tG~~~~----~~~i~~l~~~~~~~livDa~~-~~g~~--~~~~~~--~~~d~~v~s~~K~l~g~-~G~ 201 (368)
T PRK13479 134 HVALVHC--ETTTGILNP----LDEIAAVAKRHGKRLIVDAMS-SFGAI--PIDIAE--LGIDALISSANKCIEGV-PGF 201 (368)
T ss_pred EEEEEcc--cCccccccC----HHHHHHHHHHcCCEEEEEccc-ccCCc--cccccc--cCceEEEecCccccccC-CCc
Confidence 3445555 566788876 789999999999999999887 57532 222222 2468764 47988654 346
Q ss_pred eeeeccHHHHHhhhcCCcccee-----------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 699 AATLATNAVFDSFVGDSKLKAL-----------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~-----------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
|++++++++++.+........+ .....|+.+..+.++..++++.+.+++..++..+...++++.+.+.+
T Consensus 202 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L 281 (368)
T PRK13479 202 GFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGM 281 (368)
T ss_pred eEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 8899999998877642110000 01112456777778888888877554434455555566666554443
Q ss_pred HHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHH
Q 002941 768 IQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 768 ~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~ 842 (863)
.+. ....+.. -.....+..+.+.... . ....++.+.|.++||.+++. .+.+|+..-...+++|++.+
T Consensus 282 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~ 353 (368)
T PRK13479 282 RAL--GFEPLLDAEIQSPIIVTFHAPADP---A---YDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRL 353 (368)
T ss_pred HHc--CCcccCCchhcCceEEEEECCCCC---C---cCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHH
Confidence 321 1111111 0111223344333211 0 01457889999999999875 25789875456799999999
Q ss_pred HHHHHHHHHHH
Q 002941 843 LLKLYQRLEEF 853 (863)
Q Consensus 843 v~~L~~~l~~l 853 (863)
+++|++++.++
T Consensus 354 l~~L~~~l~~~ 364 (368)
T PRK13479 354 VAAIAEALYWM 364 (368)
T ss_pred HHHHHHHHHHc
Confidence 99999988764
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-10 Score=129.38 Aligned_cols=212 Identities=12% Similarity=0.079 Sum_probs=126.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc--EE---EeccccC-
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLLT- 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv---t~sKgLg- 692 (863)
-+.+++.| ++..|.+. +.+-+++|.++|++||+++|+||++..|-..+.. ..... ..++ ++ +|||.++
T Consensus 170 ~~v~l~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~ 244 (404)
T PRK09265 170 KAIVIINP--NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIAS--LAPDLLCVTFNGLSKAYRV 244 (404)
T ss_pred eEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHH--cCCCceEEEEecchhhccC
Confidence 35566777 68888655 6778999999999999999999999877433321 11111 1233 33 4799994
Q ss_pred CCCCCceeeec--cHHH----HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLA--TNAV----FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (863)
Q Consensus 693 gG~~Pigav~~--~~~i----~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~ 766 (863)
.| +.+|++++ ++++ .+.+.. ....+++.+.++..++.++|.. .+...++.+..+++.+. .+.
T Consensus 245 pG-lRiG~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~-r~~ 312 (404)
T PRK09265 245 AG-FRVGWMVLSGPKKHAKGYIEGLDM-------LASMRLCANVPAQHAIQTALGG---YQSINELILPGGRLYEQ-RDR 312 (404)
T ss_pred cc-cceEEEEEeCchHHHHHHHHHHHH-------HhccccCCCcHHHHHHHHHhcC---chhHHHHHHHHHHHHHH-HHH
Confidence 57 89999995 4443 332221 1112345677777777777742 11122222211222222 123
Q ss_pred HHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHH
Q 002941 767 LIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 767 l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~ee 838 (863)
+.+.+++++.+..+.. -|+++.+.+...... . ......+...|.++||++.|+ .+.+|+.. ..++|+
T Consensus 313 ~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~--~-~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~ 387 (404)
T PRK09265 313 AWELLNAIPGVSCVKPKGALYAFPKLDPKVYP--I-HDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDD 387 (404)
T ss_pred HHHHHhcCCCCcccCCCcceEEEEEecccccC--C-CCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHH
Confidence 3444555554433333 366777777532100 0 012345667888999999863 25778764 568899
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEF 853 (863)
Q Consensus 839 id~~v~~L~~~l~~l 853 (863)
+++++++|.++++..
T Consensus 388 l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 388 LEEAIGRIGRFLSGY 402 (404)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888654
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-10 Score=130.80 Aligned_cols=332 Identities=13% Similarity=0.041 Sum_probs=185.5
Q ss_pred CcHHHHHHHHHHHHhc--ccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 417 LQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..|.+.+|+.+.+... ..+....+..+....+++.+....+.+ ..+.+++++++++|+..+++.... .
T Consensus 50 ~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~---------~ 120 (409)
T PLN00143 50 TTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLAR---------P 120 (409)
T ss_pred CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcC---------C
Confidence 4677888888877642 211112233344555666555432211 135799999999999988876521 1
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..|+...-+|.+....+...+. ..+.+|-..
T Consensus 121 g------------d~v~v~~P~y~~~~~~~~~~g~-------------------------------~~~~~~~~~----- 152 (409)
T PLN00143 121 E------------ANILLPRPGFPDVETYAIFHHL-------------------------------EIRHFDLLP----- 152 (409)
T ss_pred C------------CEEEEcCCCCcCHHHHHHHcCC-------------------------------EEEEEeccC-----
Confidence 2 5688888888775333222110 000011000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
...+ .-| .+.+++.+. ....+.+++.| ++..|.+. +.+.+++|.++|++|
T Consensus 153 ----------~~~~--~~d--------~~~l~~~~~-------~~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~~ 202 (409)
T PLN00143 153 ----------EKGW--EVD--------LDAVEAIAD-------ENTIAMVIINP--GNPCGSVY-SYEHLNKIAETARKL 202 (409)
T ss_pred ----------CCCC--cCC--------HHHHHHhcc-------cCCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHHc
Confidence 0000 001 133444432 34567888899 78999655 788899999999999
Q ss_pred CCeEEEecccccccccCCcc-hhhhcCCCCcEE---Eecccc-CCCCCCceeeecc--HHHH------HhhhcCCcccee
Q 002941 654 KIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-TGGVIPLAATLAT--NAVF------DSFVGDSKLKAL 720 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKgL-ggG~~Pigav~~~--~~i~------~~l~~~~~~~~~ 720 (863)
|+++|.||++..|-..|..+ ....+.-.+.++ +|||.+ ..| +.+|+++++ +.+. +.+.. .
T Consensus 203 ~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~------~ 275 (409)
T PLN00143 203 GILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKK------A 275 (409)
T ss_pred CCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHH------H
Confidence 99999999998874444321 112222222343 679984 467 899999983 3332 22221 0
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEEccCCcCC
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel~~~~~~~ 798 (863)
....++ .+.++.+++.+.|+-- ..++.++..+..+..++.+ .+.+.+.+.... ...-|.++.+.+..... .
T Consensus 276 ~~~~~~-~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~----~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~-~ 348 (409)
T PLN00143 276 LNPAPF-PPTFIQAAIPEILEKT-TEDFFSKTINILRAALAFC----YDKLKEIPCIMCPQKAEGAFFALVKLNLLLL-E 348 (409)
T ss_pred HhccCC-CCchHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCCCCCeeEEEEEecchhhc-C
Confidence 111223 3666777777666421 1334444444333333333 333444443221 12236777788753100 0
Q ss_pred CCchHHHHHHH-HHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLL-KKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 799 ~~~~~~~~~l~-~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
... ...+++ ..+.++||.+.|+. +.+|+. +..+++++++.+++|.+++++.
T Consensus 349 ~~~--~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~--~~~~~~~l~~al~rl~~~l~~~ 405 (409)
T PLN00143 349 DIE--DDMEFCLKLAKEESLIILPGVTVGLKNWLRIT--FAVEQSSLEDGLGRLKSFCGRH 405 (409)
T ss_pred CCC--CHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHHHh
Confidence 000 133444 45578999999842 678885 4567899999999999887643
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-10 Score=131.28 Aligned_cols=209 Identities=10% Similarity=0.072 Sum_probs=130.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc--EE---Eecccc-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLL-TG 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv---t~sKgL-gg 693 (863)
+.++..| ++..|.. .+.+.+++|.++|++||+++|+||++..|-..|.. .... ...++ ++ +|||.+ ..
T Consensus 171 ~v~~~~p--~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~SfSK~~~~~ 245 (401)
T TIGR01264 171 ALIVNNP--SNPCGSV-FSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA--SLSSTVPILSCGGLAKRWLVP 245 (401)
T ss_pred EEEEcCC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH--HcCCCCcEEEEccCcccCCCc
Confidence 3455567 7888865 47888999999999999999999999888544431 1111 12232 43 679984 46
Q ss_pred CCCCceeeeccH------HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLATN------AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 694 G~~Pigav~~~~------~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
| +.+|++++++ ++++.+..- ...+++.++++..++.+.|+-. .+++.++.++..+..++.+.
T Consensus 246 G-lRiG~iv~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~~l~--- 313 (401)
T TIGR01264 246 G-WRLGWIIIHDRRGILRDIRDGLVKL-------SQRILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAMLCY--- 313 (401)
T ss_pred c-ceEEEEEecCcchhHHHHHHHHHHH-------hhccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHH---
Confidence 6 8999999863 344443320 1123455777888877777531 23445555555444444443
Q ss_pred HHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-----CEEEEecCCCCcHHHHH
Q 002941 768 IQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-----NVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 768 ~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-----~~lr~~ppl~~t~eeid 840 (863)
+.+++++.+..+ ..-|+++.+.+........ .....++..|+ ++||++.|+. +.+|+.. ..++++++
T Consensus 314 -~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~---~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~--~~~~~~l~ 387 (401)
T TIGR01264 314 -GALAAVPGLRPVMPSGAMYMMVGIEMEHFPEF---KNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL--TVPVVMME 387 (401)
T ss_pred -HHHHhCCCCcccCCCeeeEEEEEecccccCCC---CCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE--cCCHHHHH
Confidence 334444433322 3457788888753210000 01356777775 7899998742 6778753 45688999
Q ss_pred HHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEE 852 (863)
Q Consensus 841 ~~v~~L~~~l~~ 852 (863)
+++++|.+.+++
T Consensus 388 ~~l~rl~~~~~~ 399 (401)
T TIGR01264 388 EACSRIQEFCER 399 (401)
T ss_pred HHHHHHHHHHhc
Confidence 999999887754
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-10 Score=131.51 Aligned_cols=210 Identities=13% Similarity=0.070 Sum_probs=130.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcE----EEeccccC-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDI----ACYGKLLT- 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDi----vt~sKgLg- 692 (863)
..+.+++.| ++..|.+. +.+-+++|.++|++|++++|.||++..|-..+.. -....+.-.+|. .+|||.++
T Consensus 176 ~~~i~~~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 176 PKYVVVNFP--HNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNM 252 (403)
T ss_pred ceEEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCC
Confidence 344555557 78888555 6777999999999999999999999776322321 111111112343 25899995
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
.| +.+|++++++++++.+..- .....++.++++.+++..+++- .+++++++++..+..++.+.+ .+.
T Consensus 253 ~G-lRiG~iv~~~~li~~~~~~------~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~----~L~ 319 (403)
T PRK08636 253 AG-WRVGFVVGNKKLVGALKKI------KSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIE----SFA 319 (403)
T ss_pred cc-ceeeeeeCCHHHHHHHHHH------HHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 77 8999999999999887641 1112234444555555444431 234555555544444444433 333
Q ss_pred cCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHH
Q 002941 773 SHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 773 ~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v 843 (863)
+++ +.... .-|+++.+.+.+.. . ......++..++ ++||.+.|+ .+.+|+.- ..+++++++++
T Consensus 320 ~~~-~~~~~p~~g~~~~~~l~~~~-~----~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~~ 391 (403)
T PRK08636 320 NAG-WELQKPRASMFVWAKIPEPA-R----HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIAL--IENENRIRQAA 391 (403)
T ss_pred HCC-CcccCCCcceEEEEECCCcc-C----CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEe--cCCHHHHHHHH
Confidence 333 22223 35777778875321 0 001456776655 689999874 26788864 46889999999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
++|.++++.
T Consensus 392 ~rl~~~l~~ 400 (403)
T PRK08636 392 RNIKKFLKE 400 (403)
T ss_pred HHHHHHHHh
Confidence 999888865
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-10 Score=130.32 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=138.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
..+++.| ++..|... +.+.++++.+.|+++++++|+||++..|...-... ...+ .++++ +|||.++ .| +
T Consensus 133 ~v~l~nP--nNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~--~~~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 133 HLIVVNP--NNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPAASLA--AHTD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCcccch--hccC-CCCEEEEecChhhcCCcc-h
Confidence 5789999 78999665 66668888888999999999999998773211111 1111 24544 7899998 78 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ...+..+.++.+++.++|+ +.++.++.++..+..++.+.+. ++++..
T Consensus 206 RiGy~v~~~~li~~l~~~--------~~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~----L~~~g~ 270 (339)
T PRK06959 206 RAGFVLAAPALLAALRDA--------LGAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAAL----LRAHGF 270 (339)
T ss_pred heEEEecCHHHHHHHHHh--------cCCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHH----HHHCCC
Confidence 999999999999988752 1345567788888888775 4555666555555555544433 333321
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+...++++.+.+. . +..+...|.++||+++.++ +.+|++ ...++++.++++++|++.++.+.
T Consensus 271 --~~~~~~~f~~~~~~--~---------~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 271 --AVHATPLFSWTDDP--R---------AAALHAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred --CccCcceEEEEeCC--C---------HHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHHHHHHHHHHHHh
Confidence 12234555555542 1 4568899999999999765 678886 33578899999999998887765
Q ss_pred H
Q 002941 855 K 855 (863)
Q Consensus 855 ~ 855 (863)
.
T Consensus 336 ~ 336 (339)
T PRK06959 336 A 336 (339)
T ss_pred h
Confidence 4
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=139.28 Aligned_cols=236 Identities=14% Similarity=0.080 Sum_probs=149.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| .+||+....||+
T Consensus 36 r~~~p~~~~le~~la~l~g~---~~a~~~~sG~~Ai~~~l~~l~~---------~g------------d~Vl~~~~~y~~ 91 (369)
T cd00614 36 RIGNPTVDALEKKLAALEGG---EAALAFSSGMAAISTVLLALLK---------AG------------DHVVASDDLYGG 91 (369)
T ss_pred CCCChhHHHHHHHHHHHHCC---CCEEEEcCHHHHHHHHHHHHcC---------CC------------CEEEECCCCcch
Confidence 34578899999999999873 5788889999999999986631 12 468888877777
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.... ..+ + +....++ .+|
T Consensus 92 ~~-~~~~~~~-~~~------------g-------------~~~~~v~------------------------~~d------ 114 (369)
T cd00614 92 TY-RLFERLL-PKL------------G-------------IEVTFVD------------------------PDD------ 114 (369)
T ss_pred HH-HHHHHHH-hhc------------C-------------eEEEEeC------------------------CCC------
Confidence 53 1111000 000 0 0000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.+ +++.|.+.+ +++|.++|++||+++|+|+++. .+... ..+
T Consensus 115 --~~~l~~~i~--------~~~~~v~~e~~-~np~g~~~d----l~~i~~la~~~g~~livD~t~~-~~~~~-----~~~ 173 (369)
T cd00614 115 --PEALEAAIK--------PETKLVYVESP-TNPTLKVVD----IEAIAELAHEHGALLVVDNTFA-TPYLQ-----RPL 173 (369)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-chhcC-----Chh
Confidence 133444442 24678999987 899887776 8999999999999999999984 32221 112
Q ss_pred CCCCcEE--EeccccCC-CCCCceeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLgg-G~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
...+|++ +++|.++| |-...|++++++ ++++.+.... .......+|..+++++..|+.+. ...++..+
T Consensus 174 ~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------~~~g~~~~p~~a~~~l~~l~tl~--~r~~~~~~ 245 (369)
T cd00614 174 ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR------LALGTILSPFDAWLLLRGLKTLP--LRMERHSE 245 (369)
T ss_pred hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH------HhhCCCCCHHHHHHHHcCCCCHH--HHHHHHHH
Confidence 3356887 66899986 325678888877 8887776421 11234567888777766665432 23455566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~ 792 (863)
+..++.+.| +++|.|..| .|.|.|+.+++.
T Consensus 246 na~~la~~L--------~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 246 NALKVAEFL--------EKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred HHHHHHHHH--------HcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 666665533 344433222 367999999996
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-10 Score=132.71 Aligned_cols=232 Identities=13% Similarity=0.056 Sum_probs=133.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc----ccc------cCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG----FWR------LGV 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG----fGR------tG~ 671 (863)
+.|++.+.. .+++++.+|+++.. ++..|..+.+.+.+++|+++|++||++||.|+++.. |+. .+.
T Consensus 164 e~Le~~i~~----~~~~~tk~Ivl~~p-~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~ 238 (460)
T PRK13238 164 EKLEALIEE----VGAENVPFIVMTIT-NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDK 238 (460)
T ss_pred HHHHHHHhh----cCCCceeEEEEecC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCC
Confidence 456666642 23356888888865 677665677899999999999999999999997742 110 111
Q ss_pred cch-h-hhcCCCCcEEEeccccCCCCCCceeeec-c-HHHHHhhhcCCccceeeccc-CCCccHHHHHHHHH-HHHHhcC
Q 002941 672 ETT-A-DLLGCVPDIACYGKLLTGGVIPLAATLA-T-NAVFDSFVGDSKLKALLHGH-SYSAHALGCAAAAK-SIKWFKD 745 (863)
Q Consensus 672 ~~a-~-e~~gv~PDivt~sKgLggG~~Pigav~~-~-~~i~~~l~~~~~~~~~~~~~-T~~~~pla~AAalA-aL~~l~~ 745 (863)
..+ . ...+--.|+++|+ +--.|+.|+|++++ + +++++.+... ....+++ ||++++..+.+|+| +|+...+
T Consensus 239 si~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~~~---~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~ 314 (460)
T PRK13238 239 SIKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECRTL---CILYEGFPTYGGLAGRDMEALAVGLYEGMD 314 (460)
T ss_pred CHHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhhhc---ccccCCcccccCcHHHHHHHHHhhHHHhhC
Confidence 000 0 0011236888776 33233356555555 4 5777776531 1123444 89998777666665 4543334
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCchHHHHHHHHHHH-HCCcEEEe
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGSLYAASLLKKLR-EDGVYMRP 821 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~~~~~~l~~~l~-e~GV~~~p 821 (863)
+++.+...++.++|.+ .|.+ ...|.+... -|.++.+++..-. ....+. ...++.+|+ +.||.+.|
T Consensus 315 ~~~~~~~~~~~~~l~~----~L~~--~G~~~~~p~--Gg~~v~~d~~~~~~~~~~~~~~---~~~~a~~L~~e~GV~~~~ 383 (460)
T PRK13238 315 EDYLAYRIGQVEYLGE----GLEE--AGVPIQTPA--GGHAVFVDAGKFLPHIPAEQFP---AQALACELYLEAGIRGVE 383 (460)
T ss_pred hHHHHHHHHHHHHHHH----HHHH--CCCCeEccC--CceEEEEEchhcCCCCCCCCCc---hHHHHHHHHHHcCeeeec
Confidence 4444443443344443 3222 244544332 2455556654321 011111 345666555 77998865
Q ss_pred cC------------------CEEEEecCC-CCcHHHHHHHHHHHHHHHHHH
Q 002941 822 LG------------------NVIYLMCGP-CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 822 ~g------------------~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l 853 (863)
.+ +.+||..|- ..|.+++|.+.++|.+..+.-
T Consensus 384 ~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~ 434 (460)
T PRK13238 384 IGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENR 434 (460)
T ss_pred ccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhH
Confidence 22 578887664 349999999999998866443
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-10 Score=130.19 Aligned_cols=211 Identities=12% Similarity=0.098 Sum_probs=131.3
Q ss_pred cEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcE----EEeccccC
Q 002941 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDI----ACYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDi----vt~sKgLg 692 (863)
++.++++. | ++..|. +.+.+-+++|.++|++||+++|+||++..+-..|... .+-.+.-.+|. .+|||.+|
T Consensus 164 ~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 240 (395)
T PRK08175 164 KPKMMILGFP--SNPTAQ-CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYN 240 (395)
T ss_pred CceEEEEeCC--CCCCCC-CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccccc
Confidence 44555555 6 788885 4577889999999999999999999997663223211 11111111342 36899996
Q ss_pred -CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
.| +.+|++++++++++.+... .....++.++.++.++.+.|+. .+...+++++..++.++.+.+ .+
T Consensus 241 ~pG-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~----~L 307 (395)
T PRK08175 241 MAG-WRIGFMVGNPELVSALARI------KSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAEQYKRRRDVLVK----GL 307 (395)
T ss_pred Ccc-hhheeeeCCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHH----HH
Confidence 67 8999999999999987641 1112345556666667666642 233344444444444443333 33
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v 843 (863)
++.+.......-|.++.+++.+.... ..+..++..++ ++||.+.|. .+.+|+.. ..+++.+.+++
T Consensus 308 ~~~~~~~~~p~~g~~i~i~l~~~~~~-----~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al 380 (395)
T PRK08175 308 HEAGWMVEMPKASMYVWAKIPEPYAA-----MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAI 380 (395)
T ss_pred HHcCCcccCCCEEEEEEEECCcccCC-----CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHH
Confidence 33332111123577888888643100 01456777665 689999874 25788864 46788899999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
++|.+.+.+
T Consensus 381 ~~l~~~l~~ 389 (395)
T PRK08175 381 RGIKAMFRA 389 (395)
T ss_pred HHHHHHHHh
Confidence 998888764
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-10 Score=128.58 Aligned_cols=317 Identities=13% Similarity=0.006 Sum_probs=183.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~~~v~f~~SGSeAvE~A 477 (863)
..+|+.+|.- ... ..|.+.+++.+.+....+.. +.+..+...++++.+.+..+.. ..+.++.++++++|+..+
T Consensus 22 ~~i~l~~~~p--~~~--~~~~~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~ 96 (357)
T TIGR03539 22 GIVDLSVGTP--VDP--VPPLIRAALAAAADAPGYPQ-TWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWL 96 (357)
T ss_pred CeEEccCCCC--CCC--CCHHHHHHHHHHHhhCCCCc-ccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHH
Confidence 5677776432 122 35788888877655433321 2233355566777776543310 136899999999998877
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
+.+.. .. .| ..|++-+-+|.+....+... |
T Consensus 97 ~~~l~----~~----~g------------d~Vl~~~p~y~~~~~~~~~~-g----------------------------- 126 (357)
T TIGR03539 97 PTLLG----LG----PG------------DTVVIPELAYPTYEVGALLA-G----------------------------- 126 (357)
T ss_pred HHHHc----CC----CC------------CEEEECCCCcHHHHHHHHhc-C-----------------------------
Confidence 66440 00 12 56888888886553222111 0
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
...+.++ + + +.++ ..++.++++... ++..|...
T Consensus 127 -~~~~~v~--------------------------~-----------~-~~l~-------~~~~~~v~~~~p-~NPtG~~~ 159 (357)
T TIGR03539 127 -ATPVAAD--------------------------D-----------P-TELD-------PVGPDLIWLNSP-GNPTGRVL 159 (357)
T ss_pred -CEEeccC--------------------------C-----------h-hhcC-------ccCccEEEEeCC-CCCcCccC
Confidence 0001111 0 0 1121 124455665543 78888655
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-h--hcCC-CCc-EE--EeccccC-CCCCCceeeeccHHHHH
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-D--LLGC-VPD-IA--CYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e--~~gv-~PD-iv--t~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
+.+.+++|.++|++||+++|.||++..|...+..... . ..+. ... ++ +|||.++ .| +.+|++++++++++
T Consensus 160 -~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~ 237 (357)
T TIGR03539 160 -SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAG-YRAGFVAGDPALVA 237 (357)
T ss_pred -CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCc-eeEEEEecCHHHHH
Confidence 6778999999999999999999999877544432111 1 0111 112 33 6899974 66 89999999999988
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... .....++.++++.+++.++|+ ++....++++..+..++.+. +.+.+++ +.-.... |.++.
T Consensus 238 ~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~----~~L~~~g-~~~~~p~~~~~~~ 303 (357)
T TIGR03539 238 ELLTV------RKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLK----PALEKAG-FRIDHSEAGLYLW 303 (357)
T ss_pred HHHHH------HhhcccCCCHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHH----HHHHHcC-CCCcCCCccEEEE
Confidence 87531 122345567777777766664 33334444443333444333 3333333 1112233 44555
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+.+..+ ...+.+.|.++||.+.|. .+.+|++. ..+++++++++++|
T Consensus 304 ~~~~~~----------~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~--~~~~~~i~~~~~~l 356 (357)
T TIGR03539 304 ATRGED----------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL 356 (357)
T ss_pred EECCCC----------HHHHHHHHHhCCEEECCccccCCCCCCeEEEEe--cCCHHHHHHHHHhh
Confidence 554321 446778889999999873 26788864 44788899888776
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-10 Score=128.70 Aligned_cols=320 Identities=12% Similarity=0.092 Sum_probs=187.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .+.+| ..|.+.+++.+....+.. |....-.+|.+.+++.++-. .+.+++++++++++..+++
T Consensus 37 ~~i~l~~~--~~~~~--~~~~~~~al~~~~~~~~~-----Y~~~~g~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 37 RIAKLGSN--ENPLG--PSPAVRRAFADIAELLRL-----YPDPQGRALREAIAARTGVP-ADRIILGNGSEDLIAVICR 106 (371)
T ss_pred ceEEcCCC--CCCCC--CCHHHHHHHHHHHHHhhc-----CCCCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 67887764 33455 468888888765444322 22222236778888877643 3689999999998877776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| ..|+...-+|.+....+... | .
T Consensus 107 ~~~~---------~g------------d~vli~~P~y~~~~~~~~~~-g------------------------------~ 134 (371)
T PRK05166 107 AVLR---------PG------------DRVVTLYPSFPLHEDYPTMM-G------------------------------A 134 (371)
T ss_pred HhcC---------CC------------CEEEEcCCChHHHHHHHHHc-C------------------------------C
Confidence 5421 12 46777777776542211110 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
...++|... .+ .-| .+.+++.+.. ..-..++..| ++..|.+. +
T Consensus 135 ~~~~v~~~~-----------------~~--~~~--------~~~l~~~~~~-------~~~~v~l~~p--~NPtG~~~-~ 177 (371)
T PRK05166 135 RVERVTVTP-----------------DL--GFD--------LDALCAAVAR-------APRMLMFSNP--SNPVGSWL-T 177 (371)
T ss_pred eEEEeecCC-----------------CC--CCC--------HHHHHHhhhc-------CCCEEEEeCC--CCCCCCCC-C
Confidence 001111000 00 001 1334444431 2223556778 78889665 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCC-c-chhhhc-CCCCcEE---EeccccC-CCCCCceeeec-cHHHHHhh
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLA-TNAVFDSF 711 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~-~a~e~~-gv~PDiv---t~sKgLg-gG~~Pigav~~-~~~i~~~l 711 (863)
.+.+++|.++|++ ++++|+||++..|- .+. . .....+ ...++++ +|||.++ .| +++|++++ ++++++.+
T Consensus 178 ~~~~~~l~~~~~~-~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~ 254 (371)
T PRK05166 178 ADQLARVLDATPP-ETLIVVDEAYAEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLL 254 (371)
T ss_pred HHHHHHHHHhCCC-CcEEEEECcHHHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcch-hheeeeecCCHHHHHHH
Confidence 6677888788864 89999999997763 321 1 111111 1223444 6899998 88 89999765 78888877
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel 791 (863)
... ...++.+.++.+++.+.+. +.++.++..+..+..++.+ .+.+++++. .-....|.++.+.+
T Consensus 255 ~~~--------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~g~-~~~p~~g~fl~~~~ 318 (371)
T PRK05166 255 DRV--------RTPFNVNGAAQAAALAALD---DEEHLAKGVALALAERERL----KKELAEMGY-RIAPSRANFLFFDA 318 (371)
T ss_pred HHh--------ccCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH----HHHHHHCcC-eeCCCcCCEEEEeC
Confidence 531 1234567777777777764 3445555544444444433 334444432 22345677776664
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..+ ..++++.|.++||++.|. .+.+|+. ..++++.++++++|++.+
T Consensus 319 ~~~----------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~---~~~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 319 RRP----------ASAVAEALLRQGVIVKPWKQPGFETFIRVS---IGSPEENDHFVAALDKVL 369 (371)
T ss_pred CCC----------HHHHHHHHHHCCeEEecCCCCCCCCeEEEE---cCCHHHHHHHHHHHHHHh
Confidence 321 456888999999999875 2678886 335677777777776643
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-10 Score=123.79 Aligned_cols=292 Identities=16% Similarity=0.110 Sum_probs=174.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .++++ .|.+.+|+.+.+..... ++ ....|.+++++..+ ..++.++++++|+..++.
T Consensus 9 ~~i~l~~~--~np~~---p~~~~~a~~~~~~~~~~-----yp--~~~~l~~~ia~~~~----~~I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 9 GLIDFSAS--VNPYP---PEWLDEMFERAKEISGR-----YT--YYEWLEEEFSKLFG----EPIVITAGITEALYLIGI 72 (311)
T ss_pred ceeEecCC--CCCCC---CHHHHHHHHHHHHHhhc-----CC--ChHHHHHHHHHHHC----CCEEECCCHHHHHHHHHH
Confidence 67888864 24454 48899999877654321 22 23567888888876 369999999999887663
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
+. . .| .+|++.+-+|.+....+...+..
T Consensus 73 ~~-~---------~g------------d~vlv~~P~y~~~~~~~~~~g~~------------------------------ 100 (311)
T PRK08354 73 LA-L---------RD------------RKVIIPRHTYGEYERVARFFAAR------------------------------ 100 (311)
T ss_pred hh-C---------CC------------CeEEEeCCCcHHHHHHHHHcCCE------------------------------
Confidence 32 1 12 56888888887764333222110
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
.+..| .| .+.+++.++ +....+++.| ++..|.. .+
T Consensus 101 -~~~~~-------------------------~d--------~~~l~~~~~--------~~~~vi~~~P--~NPTG~~-~~ 135 (311)
T PRK08354 101 -IIKGP-------------------------ND--------PEKLEELVE--------RNSVVFFCNP--NNPDGKF-YN 135 (311)
T ss_pred -EeecC-------------------------CC--------HHHHHHhhc--------CCCEEEEecC--CCCCCCc-cC
Confidence 00011 01 123444432 1235788899 7899964 57
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+-+++|.++|++||+++|.||++.+|...+.. .. .+.++ +|||.++ .| +++|++++ +.+.+...
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~~-~~~vi~~~S~SK~~~l~G-lRiG~~v~---~~~~l~~~- 204 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----PE-GENIIKLRTFTKSYGLPG-IRVGYVKG---FEEAFRSV- 204 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----cC-CCcEEEEeccHhhcCCcc-ceeeeeee---hHHHHHHc-
Confidence 788999999999999999999999888332211 11 23333 6799998 88 89999998 44555431
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
...+..+.++.+++.+.++ . . .+.+.++.+.+..... .+.+.+ ...+.|.++.+++.+
T Consensus 205 -------~~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~-~l~~~l-------~~~~~~~~~~~~~~~-- 262 (311)
T PRK08354 205 -------RMPWSIGSTGYAFLEFLIE---D-D-FEHLRKTMPLIWREKE-RFEKAL-------YVKSDANFFIKDVGD-- 262 (311)
T ss_pred -------CCCccCCHHHHHHHHHHHH---h-H-HHHHHHHHHHHHHHHH-HHHHhc-------CCCCCCcEEEEECCC--
Confidence 1223344555555554443 1 1 1233333223222111 111111 124556666665431
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
..++++.|.++||+++|+. +.+|+. ..++++.++++++|++.
T Consensus 263 ---------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 309 (311)
T PRK08354 263 ---------AEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW 309 (311)
T ss_pred ---------HHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence 3568888999999999853 678886 44666777777777653
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-10 Score=128.00 Aligned_cols=318 Identities=16% Similarity=0.130 Sum_probs=184.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+..+ .+.++- .|.+++++.+.+...... .|......+|.+.|+++++....+.++++++++++...+++
T Consensus 27 ~~i~l~~~--~~~~~~--~~~~~~~~~~~~~~~~~~---~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 27 GMVKLDAM--ENPYRL--PAELRAELGERLAEVALN---RYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CceeCcCC--CCCCCC--CHHHHHHHHHHhhccccc---cCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 56665543 345664 689999999888642211 12222346677888887763211368888877888887776
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
+... .| .+|++...+|.+....+... | .
T Consensus 100 ~~~~---------~g------------d~vlv~~P~y~~~~~~~~~~-g------------------------------~ 127 (356)
T PRK04870 100 ACAK---------PG------------ATVLAPEPGFVMYRMSAKLA-G------------------------------L 127 (356)
T ss_pred HhcC---------CC------------CEEEECCCCHHHHHHHHHHc-C------------------------------C
Confidence 5421 12 56888888776643221111 1 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|... .+ .-| .+.+++.+.. ...-+.+++.| ++..|... +
T Consensus 128 ~~~~i~~~~-----------------~~--~~d--------~~~l~~~~~~------~~~~~v~l~~p--~NPtG~~~-~ 171 (356)
T PRK04870 128 EFVGVPLTA-----------------DF--TLD--------LPAMLAAIAE------HRPALVFLAYP--NNPTGNLF-D 171 (356)
T ss_pred EEEEecCCC-----------------CC--CCC--------HHHHHHHhhc------CCCCEEEEcCC--CCCCCCCC-C
Confidence 111111000 00 011 2345555531 12223445567 78888766 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.+-++++.++| ++++|+||++..|... . +. ....-.+.++ +||| .+ .| +++|++++++++++.+....
T Consensus 172 ~~~~~~i~~~~---~~~ii~De~y~~~~~~-~-~~-~~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~ 243 (356)
T PRK04870 172 DADVERIIEAA---PGLVVVDEAYQPFAGD-S-WL-PRLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELDKVR 243 (356)
T ss_pred HHHHHHHHHHC---CCEEEEECCchhhcCc-c-hH-HHHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHHHcc
Confidence 55566666666 7899999999877421 1 11 1111123333 6799 43 46 79999999999998876421
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..++.+.++.+++..+++ +.+..++..+..+..++.+. +.+.+.+.+......|.++.+.+. .
T Consensus 244 --------~~~~~~~~~q~~a~~~l~---~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~~--~ 306 (356)
T PRK04870 244 --------PPYNVNVLTQATALFALE---HVDVLDAQAAQLRAERTRLA----AALAALPGVTVFPSAANFILVRVP--D 306 (356)
T ss_pred --------CCCcCCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHH----HHHHhCCCcEECCCCCeEEEEECC--C
Confidence 234456677766666665 33333444444444444433 333444444333455667777654 1
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
...+...|.++||.+++. .+.+|+. ..+.++++.++++|+++
T Consensus 307 ---------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al~~~ 355 (356)
T PRK04870 307 ---------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVT---VGTPEENAQFLAALKAA 355 (356)
T ss_pred ---------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHHh
Confidence 346788899999999874 2578886 34788999999988765
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-11 Score=132.90 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=125.0
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~ 695 (863)
-..+|+.| ++..|... +.+.+++|.+.|++ ++++|+||++..|. +...........|+++ +|||.+| .|
T Consensus 147 ~lv~l~nP--nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~~s~~~~~~~~~n~iv~rSfSK~~glaG- 219 (351)
T PRK01688 147 KVVYVCSP--NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFC--PQASLAGWLAEYPHLVILRTLSKAFALAG- 219 (351)
T ss_pred cEEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcC--CCCChHHHHhhCCCEEEEecchHhhcCHH-
Confidence 35677888 78899765 66678888888876 68999999998774 2111122223345655 6899987 67
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+.+|++++++++++.+... ...|..+.++.++|.++|+.- ..++.++..+.....++.+ .+.+.+.+
T Consensus 220 lRiGy~i~~~~~i~~l~~~--------~~~~~v~~~~~~~a~~~L~~~-~~~~~~~~~~~~~~~r~~l----~~~L~~~~ 286 (351)
T PRK01688 220 LRCGFTLANEEVINLLLKV--------IAPYPLSTPVADIAAQALSPQ-GIAAMRERVAEINANRQWL----IAALKEIP 286 (351)
T ss_pred HHHhHHhCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 8999999999999988742 123455666677777666521 1122322223222333333 33444555
Q ss_pred Cee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHH
Q 002941 776 TVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 776 ~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+. -....|.++.+.+. . ...+.+.|+++||++++.+ +.+|++ ..++++++.++++|
T Consensus 287 ~~~~~~ps~~nfi~~~~~--~---------~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis---~~~~~e~~~l~~al 350 (351)
T PRK01688 287 CVEQVFDSETNYILARFT--A---------SSAVFKSLWDQGIILRDQNKQPGLSNCLRIT---IGTREECQRVIDAL 350 (351)
T ss_pred CCCeECCCCCcEEEEEcC--C---------HHHHHHHHHHCCeEEEECCCcCCCCCeEEEe---CCCHHHHHHHHHhh
Confidence 432 22445677777663 1 4578889999999998642 678887 45789999999877
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-10 Score=128.33 Aligned_cols=213 Identities=12% Similarity=0.098 Sum_probs=128.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCcEE---Eecccc-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLL-TG 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---t~sKgL-gg 693 (863)
....+++.| ++..|. +.+.+-+++|.++|++||+++|+||++..|...+.. .....+.-.++++ +|||.+ ..
T Consensus 170 ~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p 246 (403)
T TIGR01265 170 TVAIVVINP--SNPCGS-VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVP 246 (403)
T ss_pred ccEEEEecC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCC
Confidence 345666667 678885 456777899999999999999999999888544432 2222221122344 679985 45
Q ss_pred CCCCceeeecc--HH-----HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLAT--NA-----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (863)
Q Consensus 694 G~~Pigav~~~--~~-----i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~ 766 (863)
| +.+|++++. ++ +.+.+.. ....+.+.++++..++.+.|+. ..+.+.++.++..++-++.+
T Consensus 247 G-lRiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l--- 314 (403)
T TIGR01265 247 G-WRLGWIIIHDPHGIFRDTVLQGLKN-------LLQRILGPATIVQGALPDILEN-TPQEFFDGKISVLKSNAELC--- 314 (403)
T ss_pred c-ceEEEEEEeCchhhhHHHHHHHHHH-------HhhhhcCCChHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH---
Confidence 6 899999874 22 3333321 1112345677787777777753 12344444444444434433
Q ss_pred HHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec-----CCEEEEecCCCCcHHHH
Q 002941 767 LIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 767 l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~-----g~~lr~~ppl~~t~eei 839 (863)
.+.++.++.+..+. .-|.++.+++...... .. ....+++..+ .++||.+.|+ .+.+|+. +...++.+
T Consensus 315 -~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~-~~--~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis--~~~~~~~l 388 (403)
T TIGR01265 315 -YEELKDIPGLVCPKPEGAMYLMVKLELELFP-EI--KDDVDFCEKLVREESVICLPGSAFGLPNWVRIT--ITVPESML 388 (403)
T ss_pred -HHHHhcCCCceecCCCceeEEEEeccccccC-CC--CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--ecCCHHHH
Confidence 34445555443233 3567777887542100 00 0144676765 5789999874 2678886 34567888
Q ss_pred HHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEE 852 (863)
Q Consensus 840 d~~v~~L~~~l~~ 852 (863)
++.+++|.+.+++
T Consensus 389 ~~~l~~l~~~~~~ 401 (403)
T TIGR01265 389 EEACSRIKEFCER 401 (403)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-10 Score=129.23 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=133.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv 680 (863)
+.+++.+.. ++...+.+++.| ++..|. +.+++.+++|.++|++||+++|.||++..|-..+.. -.... +
T Consensus 160 ~~l~~~~~~-----~~~~~~i~l~~P--~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~--~ 229 (433)
T PRK06855 160 DDLENKVKY-----NPSIAGILLINP--DNPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSE--V 229 (433)
T ss_pred HHHHHHHhc-----CCCceEEEEECC--CCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHH--H
Confidence 445555532 223456678889 788886 557888999999999999999999999888444431 11111 1
Q ss_pred CCc---E--EEeccccC-CCCCCceeeecc-----H---HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 681 VPD---I--ACYGKLLT-GGVIPLAATLAT-----N---AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 681 ~PD---i--vt~sKgLg-gG~~Pigav~~~-----~---~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
.+| | -.|||.++ .| +.+|++++. + ++++.+... .....+.+.+++.++.+.|+--+-+
T Consensus 230 ~~~~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Q~a~~~~l~~~~~~ 301 (433)
T PRK06855 230 IGDVPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNA-------KMIEVCSTTLPQMAIPRIMSHPEYK 301 (433)
T ss_pred cCcCCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHh-------hccccCCChHHHHHHHHhhcCCcHH
Confidence 222 2 26799996 78 899999972 2 233333221 1123345677777776666411002
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCc----CCCCch----H-----------HHH
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGC----NAGYGS----L-----------YAA 806 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~----~~~~~~----~-----------~~~ 806 (863)
++.+++++..+..++.+ .+.+.+++.+...+..| .++.+.+..... ...... . ...
T Consensus 302 ~~~~~~~~~~~~r~~~~----~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (433)
T PRK06855 302 NYLKERNKRYEKRSNIA----YEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDK 377 (433)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchH
Confidence 23334333333333332 34445554443344545 666677753200 000000 0 123
Q ss_pred HHHH-HHHHCCcEEEec---C---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 807 SLLK-KLREDGVYMRPL---G---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 807 ~l~~-~l~e~GV~~~p~---g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+++. .+.++||.+.|+ + +.+|+... ..+++++++.+++|.+++++
T Consensus 378 ~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~-~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 378 RFVYYLLASTGICVVPLSSFCTELNGFRVTLL-ERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred HHHHHHHHHcCEEEecCCcCCCCCCceEEEEC-CCcHHHHHHHHHHHHHHHHH
Confidence 4554 466889999874 2 45787642 25899999999999998875
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-10 Score=127.34 Aligned_cols=211 Identities=18% Similarity=0.163 Sum_probs=129.1
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-g 693 (863)
...+.++..| ++..|... +.+-+++|.++|++||+++|+||++.+|...+..... ....++++ +|||.++ .
T Consensus 163 ~~~~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~ 237 (388)
T PRK07337 163 RTRGVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVITINSFSKYFNMT 237 (388)
T ss_pred cceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEEEEechhhcCCc
Confidence 3455666777 68888554 6788999999999999999999999877544432111 12335655 5799996 6
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+... ......+.++++..++.++++- ...+...+.++..++.++.+ .+.+.+
T Consensus 238 G-~RiG~~~~~~~l~~~l~~~------~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~r~~~----~~~L~~ 305 (388)
T PRK07337 238 G-WRLGWLVVPEALVGTFEKL------AQNLFICASALAQHAALACFEP-DTLAIYERRRAEFKRRRDFI----VPALES 305 (388)
T ss_pred h-hheeeeecCHHHHHHHHHH------HHHhccCCChHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 7 8999999999998887641 1122334567777776666541 01112233333333333333 333444
Q ss_pred CCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec--------CCEEEEecCCCCcHHHHHHHH
Q 002941 774 HRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 774 ~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v 843 (863)
++....+ ..-|.++.+++...... ......+++..+ .++||.+.|+ .+.+|+.. ..+++++.+++
T Consensus 306 ~~~~~~~~p~~g~f~~~~~~~~~~~---~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~--~~~~~~l~~~l 380 (388)
T PRK07337 306 LGFKVPVMPDGAFYVYADCRGVAHP---AAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSY--ATSMSRLEEAV 380 (388)
T ss_pred cCCccccCCCeeEEEEEecccccCC---CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEe--cCCHHHHHHHH
Confidence 4332112 33577888888631100 000145677664 5789999763 25778764 44688888888
Q ss_pred HHHHHHH
Q 002941 844 LKLYQRL 850 (863)
Q Consensus 844 ~~L~~~l 850 (863)
++|.+++
T Consensus 381 ~rl~~~l 387 (388)
T PRK07337 381 ARLGKLF 387 (388)
T ss_pred HHHHHHh
Confidence 8887654
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-10 Score=127.72 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=119.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc----CCCCcEEEeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~----gv~PDivt~sKgLg-gG 694 (863)
+.+++.| ++..|.+ .+.+-+++|.++|++||+++|+||++..|-..|.. .....+ +..-.+-+|||.++ .|
T Consensus 173 ~i~l~~P--~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G 249 (394)
T PRK05942 173 ILYFNYP--SNPTTAT-APREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG 249 (394)
T ss_pred EEEEcCC--CCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChh
Confidence 4444557 7888855 57888999999999999999999999766433321 111111 11122347899886 67
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+.... ....++.+.++..++.++|+.. +++.+++++..+..++.+.+. +.+.
T Consensus 250 -lRiG~i~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~----L~~~ 316 (394)
T PRK05942 250 -WRVGFVVGNRHIIQGLRTLK------TNLDYGIFSALQKAAETALQLP--DSYLQQVQERYRTRRDFLIQG----LGEL 316 (394)
T ss_pred -hheeeeecCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHH----HHHC
Confidence 89999999999999886421 1123455666777777777632 234444454444444444333 3333
Q ss_pred CCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHH-HHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
+ +.-.... |+++.+.+.... ...++... +.++||.+.|. .+.+|++.. ...+.+.+.+++
T Consensus 317 ~-~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~ 385 (394)
T PRK05942 317 G-WNIPPTKATMYLWVPCPVGM--------GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDR 385 (394)
T ss_pred C-CeecCCCeeeEEEEECCCCC--------CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHH
Confidence 3 2223333 446667765321 13345554 45789999763 267888753 344455555554
Q ss_pred HH
Q 002941 846 LY 847 (863)
Q Consensus 846 L~ 847 (863)
|.
T Consensus 386 l~ 387 (394)
T PRK05942 386 LK 387 (394)
T ss_pred HH
Confidence 43
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-10 Score=126.94 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=124.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--Ccc-hh---hhcCC--CCcEE---Eecc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VET-TA---DLLGC--VPDIA---CYGK 689 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~-a~---e~~gv--~PDiv---t~sK 689 (863)
+.+++.| ++..|... +.+.+++|.++|++||+++|.||++..+...+ ... .. ...+. .+.++ +|||
T Consensus 168 ~i~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 244 (393)
T TIGR03538 168 LLFVCSP--GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSK 244 (393)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchh
Confidence 4456677 88999654 78889999999999999999999997664332 111 11 11221 12333 6799
Q ss_pred ccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 002941 690 LLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (863)
Q Consensus 690 gLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~ 768 (863)
.++ .| +.+|++++++++++.+... ....+++.+++.+.++.+++. .+++.++.++..+..++.+.+.+.
T Consensus 245 ~~~~~G-lRvG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~ 314 (393)
T TIGR03538 245 RSNLPG-LRSGFVAGDAEILKAFLRY------RTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEILG 314 (393)
T ss_pred hcCCcc-cceEEEecCHHHHHHHHHH------HHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 754 56 8999999999998877531 111344567777777777663 333444444444444443333322
Q ss_pred HHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------------CCEEEEecCCCC
Q 002941 769 QQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCS 834 (863)
Q Consensus 769 ~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------------g~~lr~~ppl~~ 834 (863)
+. .+. ....-|.++.+++. .+ ..++++.|+ ++||.+.|+ .+.+|+. ++.
T Consensus 315 ~~---~~~--~~p~gg~f~~~~~~-~~---------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris--~~~ 377 (393)
T TIGR03538 315 QV---LDL--ELPDAGFYLWPKVP-GD---------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIA--LVA 377 (393)
T ss_pred hh---Ccc--cCCCeeEEEEEECC-CC---------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEE--ecC
Confidence 21 111 12345677778775 11 346777775 589999653 1467775 345
Q ss_pred cHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQR 849 (863)
Q Consensus 835 t~eeid~~v~~L~~~ 849 (863)
+++++++++++|.+.
T Consensus 378 ~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 378 PLEECVEAAERIRSF 392 (393)
T ss_pred CHHHHHHHHHHHHHh
Confidence 789999999888764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-09 Score=122.94 Aligned_cols=323 Identities=13% Similarity=0.161 Sum_probs=167.9
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-.+++.+|+.+.++.+. ...+...+++++++++++. +.++++++|++|+..|++..+. .|
T Consensus 25 ~~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~a~~~g~---~~~~~~~g~t~al~~al~al~~---------~G-- 84 (363)
T TIGR01437 25 VSDEVADAQKRGAQNYF------EIKELVNKTGEYIANLLGV---EDAVIVSSASAGIAQSVAAVIT---------RG-- 84 (363)
T ss_pred CCHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhCC---CeEEEEcCHHHHHHHHHHHHhc---------CC--
Confidence 36899999999876542 2356778899999999873 5789999999999999987631 11
Q ss_pred CCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+++. .. -|.+....-.+ ...+.|.. | . ..+ +......|...+.++.
T Consensus 85 ----------d~~~~-~~-~~~s~~~~~eVi~~~~~~~~-----~-~--~~~---~~~~~~~g~~~v~v~~--------- 132 (363)
T TIGR01437 85 ----------NRYLV-EN-LHDSKIEVNEVVLPKGHNVD-----Y-G--APV---ETMVRLGGGKVVEAGY--------- 132 (363)
T ss_pred ----------Ccchh-hc-ccccccccceEEEECccchh-----c-C--Cch---HHHHHhcCCeEEEEcC---------
Confidence 12222 12 23332100000 00000000 0 0 000 0000000000010000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
+..-| .+.+++.+. ++..+.+++..- .+..|.+.+ +++|.++|++||+
T Consensus 133 ------------~~~~d--------~~~le~ai~-------~~t~ai~~v~~~-~~~~g~~~~----~~~i~~~a~~~gi 180 (363)
T TIGR01437 133 ------------ANECS--------AEQLEAAIT-------EKTAAILYIKSH-HCVQKSMLS----VEDAAQVAQEHNL 180 (363)
T ss_pred ------------CCCCC--------HHHHHHhcC-------hhceEEEEEecC-CCCcCCcCC----HHHHHHHHHHcCC
Confidence 00001 245566553 223344434432 345565555 7889999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHH
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGC 733 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~ 733 (863)
++|+|++|. + . ......+| .|++++| |.|+|. ..|++++++++++.+..... . .+..+......+
T Consensus 181 ~vivD~a~~-~--~--~~~~~~~g--~D~~~~S~~K~l~gp--~~G~l~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~ 247 (363)
T TIGR01437 181 PLIVDAAAE-E--D--LQKYYRLG--ADLVIYSGAKAIEGP--TSGLVLGKKKYIEWVKLQSK--G--IGRAMKVGKENI 247 (363)
T ss_pred eEEEECCCC-C--c--hHHHHHcC--CCEEEEeCCcccCCC--ceEEEEEcHHHHHHHHhccC--C--CcceeccCHHHH
Confidence 999999995 2 1 11111233 5988774 999764 48888888888876532100 0 001111112335
Q ss_pred HHHHHHHHHhcC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccce---EEEEEEccCCcCCCCchHHH
Q 002941 734 AAAAKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGT---LCAIELQAAGCNAGYGSLYA 805 (863)
Q Consensus 734 AAalAaL~~l~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl---~~~iel~~~~~~~~~~~~~~ 805 (863)
++..++++.+.+ .+..+...++.++ + .+.+++.|.+.-. ...|. ...+.+.... .. ...
T Consensus 248 ~gl~aAl~~~~~~~~~~~~~~~~~~~~----l----~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~--~g---~~~ 314 (363)
T TIGR01437 248 LGLTAALEQYLSTGKESGAEMVAKLTP----F----IEALNTLKGVSASIVQDEAGRDIARAEIRFDESE--LG---MTA 314 (363)
T ss_pred HHHHHHHHHHHccCcccHHHHHHHHHH----H----HHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC--CC---CCH
Confidence 555566666533 2222222222222 2 3334445443222 11111 1223333210 00 125
Q ss_pred HHHHHHHHHCC--cEEEe---cCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 806 ASLLKKLREDG--VYMRP---LGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 806 ~~l~~~l~e~G--V~~~p---~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.++.+.|.++| |++++ ..+.+++.|. +.+++|++.++++|++.+
T Consensus 315 ~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~-~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 315 ADVVQALRQGEPAIYTRGYKANEGIIEIDPR-SVTGGQLDIIVERIREIV 363 (363)
T ss_pred HHHHHHHhcCCCCEEEeeeeecCCeEEEEee-cCCHHHHHHHHHHHHHhC
Confidence 67888998877 77775 2368888866 567999999999998753
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-10 Score=130.34 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=132.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-Ccc-hhhh--cCCCC------cEE---Ee
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VET-TADL--LGCVP------DIA---CY 687 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~~~-a~e~--~gv~P------Div---t~ 687 (863)
+.+++.| ++..|.+ .+.+-+++|.++|++||+++|.||++..+-..+ ..+ .+.. .+..+ .++ +|
T Consensus 221 ~l~l~~P--~NPTG~~-~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~ 297 (481)
T PTZ00377 221 ALVVINP--GNPTGQV-LTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHST 297 (481)
T ss_pred EEEEECC--CCCCCcC-CCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecC
Confidence 4677788 7899965 478889999999999999999999997763322 211 1111 12222 244 47
Q ss_pred cccc-C-CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--C---hhhHHhHHHHHH
Q 002941 688 GKLL-T-GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--D---PQTNHNIIPERR 757 (863)
Q Consensus 688 sKgL-g-gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~---~~l~~~l~~~~~ 757 (863)
||++ + .| +.+|++++ ++++++.+... ...+++.++++.+++.++|+-.+ + +.+.+++.+..+
T Consensus 298 SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~-------~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (481)
T PTZ00377 298 SKGIIGECG-RRGGYFELTNIPPEVREQIYKL-------ASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFT 369 (481)
T ss_pred CcccccCCc-CceEEEEEeCCCHHHHHHHHHH-------hheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 9986 4 57 89999986 89999887641 12234578888888888885311 1 112233333222
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccce-EEEEEEccCC-cCCCC---chHHHHHH-HHHHHHCCcEEEec---C-----
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGT-LCAIELQAAG-CNAGY---GSLYAASL-LKKLREDGVYMRPL---G----- 823 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl-~~~iel~~~~-~~~~~---~~~~~~~l-~~~l~e~GV~~~p~---g----- 823 (863)
.+++.. +.+.+.+.+++.+......|. ++.+.+..+. ..... .......+ ...|.++||.+.|+ +
T Consensus 370 ~~~~rr-~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~ 448 (481)
T PTZ00377 370 SLKRRA-ELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGT 448 (481)
T ss_pred HHHHHH-HHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCC
Confidence 222221 123445556666655566664 4444443111 00000 00001223 45566789999873 2
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+.+|++ +..+++++++++++|.+.+++..+
T Consensus 449 ~~~Rls--~~~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 449 YHFRIT--ILPPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred CEEEEE--ECCCHHHHHHHHHHHHHHHHHHHH
Confidence 368875 457788999999999998876543
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-09 Score=123.81 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=125.3
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhh--cCCC-CcEE---Eecccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL--LGCV-PDIA---CYGKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~--~gv~-PDiv---t~sKgL 691 (863)
++.+|++... ++..|.+. +.+-+++|.++|++||+++|.||++..|...|.... ... .+.. +.++ +|||.+
T Consensus 148 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 148 RPALIWLNSP-SNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred cceEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence 3455666554 88998665 577899999999999999999999987754443211 111 0111 2233 689998
Q ss_pred C-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 692 T-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 692 g-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+ .| +.+|++++++++++.+... ....++..+++..+++.+.|+ ++++.++.++..+..++.+ .+.
T Consensus 226 ~~~G-lRiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l----~~~ 291 (364)
T PRK07865 226 NLAG-YRAGFVAGDPALVAELLEV------RKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVL----RPA 291 (364)
T ss_pred CCCc-eeeEEEecCHHHHHHHHHH------HHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH----HHH
Confidence 5 66 8999999999998887641 112334456777777666654 3444444444444444433 333
Q ss_pred HhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHH
Q 002941 771 ISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 771 ~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.+++ +.-..+. |+++.+.+..+ ...+.+.|.++||++.|+ .+.+|+.. ..++++++++
T Consensus 292 L~~~g-~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~~~~~ 358 (364)
T PRK07865 292 LEAAG-FRVDHSEAGLYLWATRGED----------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVAL--TATDERIAAA 358 (364)
T ss_pred HHHcC-CcccCCCccEEEEEeCCCC----------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEe--cCCHHHHHHH
Confidence 43443 2222333 44555555221 345778889999999863 25788864 3478999999
Q ss_pred HHHHH
Q 002941 843 LLKLY 847 (863)
Q Consensus 843 v~~L~ 847 (863)
+++|.
T Consensus 359 ~~~l~ 363 (364)
T PRK07865 359 VERLA 363 (364)
T ss_pred HHHhh
Confidence 98874
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-11 Score=127.59 Aligned_cols=355 Identities=14% Similarity=0.093 Sum_probs=220.0
Q ss_pred EEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-C-CC--CCChHHHHHHHHH
Q 002941 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-F-PE--NVYEPALECAELL 452 (863)
Q Consensus 377 ~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~-~~--~~~~~~~eLae~L 452 (863)
.++++.-+.+. .+||+ .++.+.| +|.+|...++++.+.+...+.+|+.+. . .+ ++-+.+.+|.++|
T Consensus 79 ~v~e~~~~~~~---~i~G~----~~~N~aS---~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~i 148 (467)
T KOG1358|consen 79 PVLESVMLPHV---TIDGK----DVLNFAS---ANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRI 148 (467)
T ss_pred cccccccCCce---EecCc----eeecccc---hhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHH
Confidence 34554434322 35788 8888887 677777678999999999999997653 1 12 3568899999999
Q ss_pred HhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCC
Q 002941 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (863)
Q Consensus 453 ~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~ 532 (863)
+.++|- +..+.-+-|-.+++.++..- .+| .+||..+..-|=...-++.++...
T Consensus 149 akF~G~---E~aivYs~gF~ti~S~ipaf-----------sKr-----------GDIi~~de~~nfaIq~GlqlSRS~-- 201 (467)
T KOG1358|consen 149 AKFMGT---EDAIVYSYGFSTIESAIPAF-----------SKR-----------GDIIFVDEAVNFAIQKGLQLSRST-- 201 (467)
T ss_pred HHhhCC---cceeeeccccchhhhcchhh-----------hcc-----------CcEEEEehhhhHHHHHHHhhhhhe--
Confidence 999994 44444456888888888743 122 567777665433322223222100
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
..+|. | +| ...+|+.+-+..
T Consensus 202 ------------i~~Fk--------------------h--------------------nd--------m~~lerll~E~~ 221 (467)
T KOG1358|consen 202 ------------ISYFK--------------------H--------------------ND--------MEDLERLLPEQE 221 (467)
T ss_pred ------------eEEec--------------------C--------------------CC--------HHHHHHhccCcc
Confidence 00000 0 11 112222222111
Q ss_pred --CCCCCC---cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCC---
Q 002941 613 --GLKVSG---CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVP--- 682 (863)
Q Consensus 613 --~~~~~~---~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~P--- 682 (863)
.+.++. ..--+++|.+ .-..|.++| +++|.++..||..-+|+||-.+ ||..|+ .+..+|+|+.+
T Consensus 222 ~~~~K~~k~~~~Rrfiv~EGl-~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGvteH~~v~~~~i 295 (467)
T KOG1358|consen 222 DEDQKNPKKALTRRFIVVEGL-YANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGVTEHFGVPITDI 295 (467)
T ss_pred hhhhhccccccceEEEEEEee-ccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccccccCCCCccce
Confidence 011222 2456889998 777888988 8999999999999999999995 888887 67889999863
Q ss_pred cEEEec--cccC--CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHH
Q 002941 683 DIACYG--KLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERR 757 (863)
Q Consensus 683 Divt~s--KgLg--gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~ 757 (863)
|+++.| -+|+ ||+ ++++.-+++.=+-.+ ...-++-+..|+...||..++++++ +++..+.++....
T Consensus 296 Div~~sm~~alas~GgF-----c~G~~~i~~hQrLSg----~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~ 366 (467)
T KOG1358|consen 296 DIVTASMETALASGGGF-----CAGKSFIADHQRLSG----SGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVA 366 (467)
T ss_pred eeeeecccccccccCce-----eecceeeEeeeeccc----cceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhcccc
Confidence 566653 3553 453 666655554322111 1122333456888889999999885 4555566666555
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecc--cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-----------cCC
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----------LGN 824 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-----------~g~ 824 (863)
.+...|.. .... .+.| ...++-+.+.+...........-.+++..|+.+|+++.. ...
T Consensus 367 ~~H~~l~~-------~s~~--~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~p 437 (467)
T KOG1358|consen 367 KFHAALSS-------NSGF--IVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPP 437 (467)
T ss_pred ccchhhhc-------CCce--EEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCC
Confidence 55442211 1111 1222 334555555543212222233556788888877887753 125
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 825 VIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 825 ~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+|+.....+++||++.+.+.+++...+
T Consensus 438 Siri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 438 SIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 7899989999999999999999887654
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-09 Score=120.49 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=128.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~P 697 (863)
..+|++.-+ ++..|.+.+ +++|.++|++||+++|+|+++. +|.. .. ......+|++++| |.+| .|
T Consensus 141 t~lv~~~~~-~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~~--~~~~~~~D~~~~s~~K~~g---p~ 207 (382)
T TIGR03403 141 TALVSVMWA-NNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PV--DVQKAGVDFLSFSAHKFHG---PK 207 (382)
T ss_pred CeEEEEEcc-cCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--cc--CccccCCCEEEEcchhhCC---CC
Confidence 355666654 788998887 7899999999999999999984 4322 11 1112347999888 9532 23
Q ss_pred -ceeeeccHHHH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 698 -LAATLATNAVF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 698 -igav~~~~~i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|++.++++.. ..+....... .....+.|..+..++.++++.+++ ..+...+..+.+++++. +.+++.
T Consensus 208 G~g~l~vr~~~~~~p~~~g~~~~~---~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~----~~L~~~ 278 (382)
T TIGR03403 208 GVGGLYIRKGVELTPLFHGGEHMG---GRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLE----DALLEL 278 (382)
T ss_pred ceEEEEECCCCCCCCcccCCCCCC---CcccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH----HHHhcC
Confidence 56776665431 0110000000 011344677788777888876643 24445555556666543 334445
Q ss_pred CCeeEeccc----ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEE
Q 002941 775 RTVQRVVAL----GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVI 826 (863)
Q Consensus 775 p~v~~vrg~----Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~l 826 (863)
+.+.-+... ..++.+.+.... ...+...|.++||.++.+ +..+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~i 349 (382)
T TIGR03403 279 PDVFVVGDREHRVPNTILISIKGVE---------GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAI 349 (382)
T ss_pred CCEEEECCCCCCcCCEEEEEeCCCC---------HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeE
Confidence 544333221 335555554322 445666788999999841 2469
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
|+++...+|++|||+++++|+++++++..
T Consensus 350 R~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 350 RLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998877653
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-10 Score=130.12 Aligned_cols=188 Identities=15% Similarity=0.038 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC-C-CCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccc
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG-C-VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g-v-~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~ 718 (863)
+++++++|++||++|++|++| ++|-.|-....+.++ + ..|++ |++|+|.|. ..|++++++++.+.+... .
T Consensus 237 l~~i~eia~~~gA~L~VD~AH-~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a---~ 310 (493)
T PRK13580 237 FAKLREIADEVGAVLMVDMAH-FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGP--RGGLVLAKKEYADAVDKG---C 310 (493)
T ss_pred HHHHHHHHHHcCCEEEEECch-hhceeccccchhhcCCCCCCcEEEeCChhhccCC--CeEEEEecHHHHHHHhhC---C
Confidence 999999999999999999999 677776322222221 1 46876 568999653 246688899999988532 1
Q ss_pred eeecccCCCccHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 719 ALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 719 ~~~~~~T~~~~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
++ .++..-.|..+|++.+ +..+.++ ++.++++++.++|++.|.+. .++.+.. ....-++.|.+.+..
T Consensus 311 P~--i~gg~l~p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~~------G~~vv~g-gTdshIV~V~lg~~~ 380 (493)
T PRK13580 311 PL--VLGGPLPHVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLKR------GARLVTG-GTDNHLVLIDVTSFG 380 (493)
T ss_pred Cc--ccCCCccHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHhc------CCCccCC-CCCCCEEEEEeCCHH
Confidence 22 2222334444444444 5554433 36788999999988765432 2222110 012357777776542
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe-------c----CCEEEEecCC----CCcHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP-------L----GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p-------~----g~~lr~~ppl----~~t~eeid~~v~~L~~~l~~l 853 (863)
.....+.+.|.++||++.+ . ..+||+.++. .++++|++++++.|.++++..
T Consensus 381 -------~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 381 -------LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred -------HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 1133667799999999963 2 3689999888 446999999999999988754
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-10 Score=132.55 Aligned_cols=188 Identities=14% Similarity=0.030 Sum_probs=117.2
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHH-----------H
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF-----------D 709 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~-----------~ 709 (863)
+++|+++|++||++|++|++| ++|..|..+....++ ..|++ |+.|+|.|- +-|.+++++++. +
T Consensus 200 ~a~i~~ia~~~ga~LlvD~AH-~~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d 275 (475)
T PLN03226 200 YARMRKIADKVGALLMCDMAH-ISGLVAAQEAASPFE-YCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYD 275 (475)
T ss_pred HHHHHHHHHHcCCEEEEEchh-hhCcccCCCCCCCCC-CCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHH
Confidence 779999999999999999999 577665533212222 47887 457999652 234567777644 3
Q ss_pred h--hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 710 S--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 710 ~--l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
. .... ..+.+++.+.++..+++..++|+++.+++ +.+++.++++++.+.|.+ .....+..- -..
T Consensus 276 ~~~~i~~----a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~------~G~~l~~~~-t~~ 344 (475)
T PLN03226 276 YEDKINF----AVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS------KGYKLVTGG-TDN 344 (475)
T ss_pred HHHHhcc----ccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh------CCCEEEcCC-CCC
Confidence 2 1111 11233444566888888889999986544 456677777777664322 122222110 012
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEE----ecCCCCcHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYL----MCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~----~ppl~~t~eeid~~v~~L~~~l 850 (863)
.++.|++.... ....++.+.|.+.||++... ...+|+ .....++++|++++.+.|.+++
T Consensus 345 hi~lv~~~~~g-------i~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~ 417 (475)
T PLN03226 345 HLVLWDLRPLG-------LTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAV 417 (475)
T ss_pred CEEEEEccCCC-------CCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45556664321 01345677788899988531 245776 3344578999999999999999
Q ss_pred HH
Q 002941 851 EE 852 (863)
Q Consensus 851 ~~ 852 (863)
+.
T Consensus 418 ~~ 419 (475)
T PLN03226 418 TI 419 (475)
T ss_pred HH
Confidence 84
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-10 Score=122.63 Aligned_cols=336 Identities=15% Similarity=0.130 Sum_probs=195.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-------hHHHHHHHHHHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~p~~~~~~v~f~~SGSe 472 (863)
-|+|..+ +.. -+|+|++++...+... +.+ +...| ....+..+.++++++.. .+.++|+++|+|
T Consensus 3 iYlD~~A---TTp----~~~~v~~~m~~~~~~~-fgN-PsS~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TE 72 (386)
T COG1104 3 IYLDNAA---TTP----VDPEVLEAMLPYLTEV-FGN-PSSLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATE 72 (386)
T ss_pred ccccccc---cCC----CCHHHHHHHHHHHHhh-cCC-ccchhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcH
Confidence 5788654 344 3699999999998876 222 11122 33445556667777754 378999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
+|-.|||-++..+ ..+. . ++.||+..-= |=..+.++.- ...++.
T Consensus 73 snNlaI~g~~~a~-~~~~--~------------~~HIIts~iE-H~aVl~~~~~--------------Le~~g~------ 116 (386)
T COG1104 73 SNNLAIKGAALAY-RNAQ--K------------GKHIITSAIE-HPAVLNTCRY--------------LERQGF------ 116 (386)
T ss_pred HHHHHHHhhHHhh-hccc--C------------CCeEEEcccc-cHHHHHHHHH--------------HHhcCC------
Confidence 9999999764322 1111 1 1456554322 2221111110 000000
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
++-.+++-. ..-. + .+.|+++|. ++...|-+-=+ +++
T Consensus 117 -----~Vtyl~V~~-----------------------~G~v-~-----~e~L~~al~--------~~T~LVSim~a-NnE 153 (386)
T COG1104 117 -----EVTYLPVDS-----------------------NGLV-D-----LEQLEEALR--------PDTILVSIMHA-NNE 153 (386)
T ss_pred -----eEEEeCCCC-----------------------CCeE-c-----HHHHHHhcC--------CCceEEEEEec-ccC
Confidence 000011000 0000 0 255667764 34566666666 899
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEecc-ccCCCCCCceeeeccHHHHHhh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK-LLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sK-gLggG~~Pigav~~~~~i~~~l 711 (863)
-|++.| +++|.++|+++|++|.+|-|| ++|+.- .-.+.+ ..|+++||- -++|- =.+|++..++.+.-
T Consensus 154 ~G~IQp----I~ei~~i~k~~~i~fHvDAvQ-a~Gkip--i~~~~~--~vD~ls~SaHK~~Gp-kGiGaLyv~~~~~~-- 221 (386)
T COG1104 154 TGTIQP----IAEIGEICKERGILFHVDAVQ-AVGKIP--IDLEEL--GVDLLSFSAHKFGGP-KGIGALYVRPGVRL-- 221 (386)
T ss_pred eeeccc----HHHHHHHHHHcCCeEEEehhh-hcCcee--cccccc--CcceEEeehhhccCC-CceEEEEECCCCcc--
Confidence 999998 999999999999999999999 587762 222332 379999973 44432 34677777654321
Q ss_pred hcCCccceeecccCC-------CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee---E-e
Q 002941 712 VGDSKLKALLHGHSY-------SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ---R-V 780 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~-------~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~---~-v 780 (863)
.++.||+.. +-|..+.++.-+++++..++ ++.-......+++.|.+.+.+. .|.+. . .
T Consensus 222 ------~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~--~~~~~~~~~~lr~~l~~~l~~~---~p~~~~~g~~~ 290 (386)
T COG1104 222 ------EPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEE--LEEENARLRKLRDRLEDGLLEI---IPDVYLNGDDE 290 (386)
T ss_pred ------CceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc---CCcEEEcCCcc
Confidence 223333332 23566666666677764322 2233344456666655444332 13221 1 1
Q ss_pred cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe------------------------cCCEEEEecCCCCcH
Q 002941 781 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------------------LGNVIYLMCGPCSSP 836 (863)
Q Consensus 781 rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p------------------------~g~~lr~~ppl~~t~ 836 (863)
......+.+-|..-+ ...+...|-.+||.+.. ....+||+.....|+
T Consensus 291 ~rlP~~~~~~f~gv~---------gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~ 361 (386)
T COG1104 291 PRLPNILNFSFPGVE---------GESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTE 361 (386)
T ss_pred cCCCCeEEEEeCCCc---------HHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCH
Confidence 122234444454332 44556666677888862 126899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~~~ 856 (863)
+|+|.++++|.++++.+++.
T Consensus 362 eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 362 EEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988764
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=124.04 Aligned_cols=186 Identities=11% Similarity=0.035 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeecc-HHHHHhhhcCCccce
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT-NAVFDSFVGDSKLKA 719 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~-~~i~~~l~~~~~~~~ 719 (863)
+++|.++|++||+++|+||+|. +|..+........+ ..|++ +++|+++| .+.|+++++ +++.+.+....
T Consensus 182 ~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~-~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~~~~---- 253 (416)
T PRK00011 182 FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP-HADVVTTTTHKTLRG--PRGGLILTNDEELAKKINSAV---- 253 (416)
T ss_pred HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHHHHh----
Confidence 8999999999999999999984 44433211011122 35776 56899954 578888885 78888776421
Q ss_pred eecccCCCccHHHHHHH-HHHHHHhcC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCC
Q 002941 720 LLHGHSYSAHALGCAAA-AKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAa-lAaL~~l~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~ 795 (863)
..+...+..+..+++. .+.++.+++ +++.+++.++.+++.+.| . +.+. +..-.....++.+.+.+..
T Consensus 254 -~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L----~----~~g~~~~~~~~~~~~~~i~~~~~~ 324 (416)
T PRK00011 254 -FPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEAL----A----ERGFRVVSGGTDNHLVLVDLRSKG 324 (416)
T ss_pred -CccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----H----hCCCeeeecCCCCeEEEEeCcccC
Confidence 1111111222233333 344444432 223444455444444433 2 2221 1110112355566654221
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEe----c-------CCEEEEecC----CCCcHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRP----L-------GNVIYLMCG----PCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p----~-------g~~lr~~pp----l~~t~eeid~~v~~L~~~l~~ 852 (863)
.....+.+.|.++||.++. . ...+|+... ..++++|++++++.|++++..
T Consensus 325 -------~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 325 -------LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred -------CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 0134578888899999972 2 245777432 246799999999999998876
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-10 Score=128.54 Aligned_cols=318 Identities=12% Similarity=0.037 Sum_probs=179.2
Q ss_pred CcHHHHHHHHHHHHhc-ccccC-CC----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARF-GHVMF-PE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~-~~~~~-~~----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
-.++|.+|+.+.+... ..... .. ...+...++.++|+++++.+ .+.+.|+++|++|+..+++.+++.+. .
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~~~~~~~-~-- 86 (364)
T PLN02651 11 IDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKGVMHFYK-D-- 86 (364)
T ss_pred CCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHHhcc-C--
Confidence 4688999998877542 21110 00 01234567778888888753 35899999999999999987743111 0
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
. ..+||+....|++. ......-. . .+ . .+..++.....
T Consensus 87 --~------------g~~vl~~~~~h~s~-~~~~~~~~--~-~g-----------~-----------~v~~v~~~~~~-- 124 (364)
T PLN02651 87 --K------------KKHVITTQTEHKCV-LDSCRHLQ--Q-EG-----------F-----------EVTYLPVKSDG-- 124 (364)
T ss_pred --C------------CCEEEEcccccHHH-HHHHHHHH--h-cC-----------C-----------EEEEEccCCCC--
Confidence 0 14677765555442 22111100 0 00 0 01111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+. +++.++++..+ .+..|.+.+ +++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~i~--------~~t~lv~v~~~-~n~tG~~~~----l~~I~~~~ 164 (364)
T PLN02651 125 -------------------LVD--------LDELAAAIR--------PDTALVSVMAV-NNEIGVIQP----VEEIGELC 164 (364)
T ss_pred -------------------cCC--------HHHHHHhcC--------CCcEEEEEECC-CCCceeccc----HHHHHHHH
Confidence 001 234555553 23567777776 788898877 89999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeec-ccCCC
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLH-GHSYS 727 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~-~~T~~ 727 (863)
++||+++++|.+|+ +|.. .+-.+.+ .+|++++| | ++|. ..+|++.++++..+.+...-....... ....+
T Consensus 165 ~~~g~~~~vD~a~~-~g~~--~~~~~~~--~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT 237 (364)
T PLN02651 165 REKKVLFHTDAAQA-VGKI--PVDVDDL--GVDLMSISGHK-IYGP-KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGT 237 (364)
T ss_pred HHcCCEEEEEcchh-hCCc--ccCcccC--CCCEEEechhh-hCCC-CceEEEEEcCCCCCCCCccccCCCccCCccCCC
Confidence 99999999999994 5422 2223333 46999885 8 5433 447888888876655432100000000 01224
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cccceEEEEEEccCCcCCCCchHH
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VALGTLCAIELQAAGCNAGYGSLY 804 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~Gl~~~iel~~~~~~~~~~~~~ 804 (863)
.|..++++..++|+++.+. .+++++..+.+.+++.+.+.+.+.....++.. +....++.+.+...+
T Consensus 238 ~~~~~~~~l~~al~~~~~~--~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~--------- 306 (364)
T PLN02651 238 ENTPLVVGLGAACELAMKE--MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE--------- 306 (364)
T ss_pred ccHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCC---------
Confidence 5677888888999988642 36667777777776655443221111112110 112336666664322
Q ss_pred HHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHH
Q 002941 805 AASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid 840 (863)
...+.+.|.+ |.++.+ .+.+|+++...+|++|||
T Consensus 307 ~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 307 GESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred HHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 3456666644 555311 258999999999999985
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.5e-10 Score=136.45 Aligned_cols=357 Identities=12% Similarity=0.049 Sum_probs=198.9
Q ss_pred EEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCC--CCeEE
Q 002941 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAY 465 (863)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~--~~~v~ 465 (863)
++++.+|. ..+++..+- +.++ -.|.|.+|+.+.+.+..+. ....+....+++.+++..+-.. -+.++
T Consensus 690 ~~~~~~g~----~vI~LsinE--~d~p--pPp~V~eAi~eal~~~~~s---~g~pdlr~aLa~~la~~~Gv~~d~~e~II 758 (1082)
T PLN02672 690 SVSGSQES----SLIHMDVDE--SFLP--VPSAVKASIFESFVRQNIS---ESETDPRPSILQFIKSNYGFPTDSCTEFV 758 (1082)
T ss_pred CCcccCCC----CEEEEeCCC--CCCC--CCHHHHHHHHHHHhhcCCC---CCChHHHHHHHHHHHHHhCcCCCCCCEEE
Confidence 45555666 777877643 4455 4789999999887665331 1234557788999988755431 13688
Q ss_pred EeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCC
Q 002941 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (863)
Q Consensus 466 f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~ 545 (863)
++++..++...+++.... .| ..|++...+|.+....+-..+.
T Consensus 759 vt~Gs~elL~lll~aLl~---------pG------------D~VLVp~PtY~~Y~~~a~~~Ga----------------- 800 (1082)
T PLN02672 759 YGDTSLALFNKLVLCCVQ---------EG------------GTLCFPAGSNGTYVSAAKFLKA----------------- 800 (1082)
T ss_pred EeCCHHHHHHHHHHHHcC---------CC------------CEEEEeCCChHHHHHHHHHcCC-----------------
Confidence 887766666666654411 12 5688888888776433322211
Q ss_pred cccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 002941 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (863)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv 625 (863)
..+++|-.. .+.|. -| .+.+++.+.. ......+|+
T Consensus 801 --------------~vv~Vpl~~---------------e~gf~--lD--------~d~Le~al~~------~~~~~I~L~ 835 (1082)
T PLN02672 801 --------------NFRRIPTKS---------------SDGFK--LT--------AKTLASTLET------VKKPWVYIS 835 (1082)
T ss_pred --------------EEEEEeccc---------------ccCCC--CC--------HHHHHHHhcc------CCCCEEEEE
Confidence 001111000 00000 01 1345555531 123467889
Q ss_pred ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc---hh----hhc-CCCC--cEE---EeccccC
Q 002941 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TA----DLL-GCVP--DIA---CYGKLLT 692 (863)
Q Consensus 626 EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~---a~----e~~-gv~P--Div---t~sKgLg 692 (863)
.|- ++..|. +.+.+.+++|.++|++||+++|.||++.++-..|... .+ ..+ ...+ .++ +|||.++
T Consensus 836 nPn-hNPTG~-v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 836 GPT-INPTGL-LYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred CcC-CCCcCc-cCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 994 588995 5588889999999999999999999998775444321 11 111 1112 233 5788665
Q ss_pred -CCCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 -gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
.| +.+|+++++ +++++.+.... .....+..+..+++++++.+. -+..++.+.+.+..+.+.+.. +.+.+.
T Consensus 914 lpG-LRIGylIap~~eLi~~l~~~~-----~~s~~~~~~q~Aaaaalall~-~~~~~~~~~l~e~r~~Lk~rR-d~L~e~ 985 (1082)
T PLN02672 914 SGG-HEFGFLALNDSVLIDAFHSAP-----GLSRPHSTLKYTIKKLLGLKN-QKSSDLLDGVAEQKKILKSRA-ERLKET 985 (1082)
T ss_pred cHH-HHheeEEeCCHHHHHHHHHhh-----hhcCCCcHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 56 899999986 45888876410 011112223444444444332 023334444444433333221 123344
Q ss_pred HhcCCCeeEecccceEEE-EEEccCCc---CCCCc------hHHHHHHHHHHHHC-CcEEEec---C--CEEEEecCCCC
Q 002941 771 ISSHRTVQRVVALGTLCA-IELQAAGC---NAGYG------SLYAASLLKKLRED-GVYMRPL---G--NVIYLMCGPCS 834 (863)
Q Consensus 771 ~~~~p~v~~vrg~Gl~~~-iel~~~~~---~~~~~------~~~~~~l~~~l~e~-GV~~~p~---g--~~lr~~ppl~~ 834 (863)
+.+++ +...+..|.++. +.+..-.. +.... ......+++.|+++ ||.+.|+ | +.+|+. +..
T Consensus 986 L~~~G-i~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs--fa~ 1062 (1082)
T PLN02672 986 LEACG-WDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS--FAL 1062 (1082)
T ss_pred HHHCC-CeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE--ecC
Confidence 44453 334456555444 43321000 00000 01246788888875 9999874 2 677775 456
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
+++++++++++|.+.++
T Consensus 1063 ~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1063 EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 88899999999987553
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-10 Score=126.42 Aligned_cols=308 Identities=14% Similarity=0.038 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
+...++.++|.++++.+.-+.++|++||++|++.++...++ .| .+||+...+|.+....
T Consensus 42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~---------~G------------d~Vlv~~~~~~~~~~~ 100 (401)
T PLN02409 42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS---------PG------------DKVVSFRIGQFSLLWI 100 (401)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC---------CC------------CEEEEeCCCchhHHHH
Confidence 45567777788877643224689999999999988865421 12 5788888777654321
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
-+ +. .+ +. .+..++.+... .-| .+
T Consensus 101 ~~-~~---~~------------g~-----------~v~~v~~~~~~---------------------~~~--------~~ 124 (401)
T PLN02409 101 DQ-MQ---RL------------NF-----------DVDVVESPWGQ---------------------GAD--------LD 124 (401)
T ss_pred HH-HH---Hc------------CC-----------ceEEEECCCCC---------------------CCC--------HH
Confidence 11 00 00 00 01111111000 001 24
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH--HHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE--CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel--c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+++.+.+ ....++.+|++--+ .+..|.+.+ ++++.++ |++||+++|+|++++ +|.. ....+.+
T Consensus 125 ~l~~~l~~----~~~~~~k~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~~--~id~~~~-- 190 (401)
T PLN02409 125 ILKSKLRQ----DTNHKIKAVCVVHN-ETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGAL--DFRMDEW-- 190 (401)
T ss_pred HHHHHHhh----CcCCCccEEEEEee-cccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCCc--ccccccc--
Confidence 45566642 00024555555544 566788876 7778888 999999999999985 5321 1222222
Q ss_pred CCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCccceee----------ccc---CCCccHHHHHHHHHHHHHhcC
Q 002941 681 VPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL----------HGH---SYSAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~----------~~~---T~~~~pla~AAalAaL~~l~~ 745 (863)
..|++++ .|++++. .-+|+++++++.++.+..... ..+. ... .++.+...+.+..++|+++.+
T Consensus 191 ~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~ 268 (401)
T PLN02409 191 GVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKS-PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFE 268 (401)
T ss_pred CccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCC-CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 4587765 6999765 358889999998887753211 0000 011 335566778888899998764
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEe-
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRP- 821 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p- 821 (863)
.+ .++++++.+.+.+.+.+.+.+. ....+..- .. .+.+..+.+.... ....+.+.|. +.|+.+..
T Consensus 269 ~G-~e~i~~~~~~l~~~l~~~L~~~--g~~~~~~~~~~~s~~v~~~~~p~~~--------~~~~l~~~l~~~~~i~i~~G 337 (401)
T PLN02409 269 EG-LENVIARHARLGEATRLAVEAW--GLKLCTKKPEWRSDTVTAVVVPEGI--------DSAEIVKNAWKKYNLSLGLG 337 (401)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcccceEEEeCCCCC--------CHHHHHHHHHHhCCEEEEcC
Confidence 43 4556666666666665544321 12222211 11 2234445543221 1345666665 66999884
Q ss_pred ----cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 822 ----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 822 ----~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+..+|+...-.++++++..++++|+++|.++.
T Consensus 338 ~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 338 LNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred CCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 357899987777899999999999999998753
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-09 Score=121.34 Aligned_cols=328 Identities=10% Similarity=0.001 Sum_probs=188.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
..+|+..|.. .++- .+.+.+++.+.......+....+..+....+++.+.+..+.+ ..+.+++++++++|...++
T Consensus 25 ~~i~l~~~~p--~~~~--~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~ 100 (374)
T PRK05839 25 KGLDLTIGEP--QFET--PKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFP 100 (374)
T ss_pred CeEEcCCCCC--CCCC--CHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 6788877543 3553 578888888766543322222223345556777776654421 1367999998888887777
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
++.+ . .+. ...|+...-+|.+....+...+
T Consensus 101 ~~~~--~-------~~~----------gd~vlv~~P~y~~~~~~~~~~g------------------------------- 130 (374)
T PRK05839 101 QFVL--F-------DKQ----------NPTIAYPNPFYQIYEGAAIASR------------------------------- 130 (374)
T ss_pred HHHh--c-------CCC----------CCEEEECCCCchhhHHHHHhcC-------------------------------
Confidence 6542 0 000 1467777777766533322111
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..+++|... ++.|. -| . .+..++ +.-+.+|+.| ++..|.+.
T Consensus 131 ~~v~~v~~~~---------------~~~~~--~d---~-------~~~~~~--------~~k~v~i~nP--~NPTG~~~- 172 (374)
T PRK05839 131 AKVLLMPLTK---------------ENDFT--PS---L-------NEKELQ--------EVDLVILNSP--NNPTGRTL- 172 (374)
T ss_pred CEEEEeeccc---------------ccCCc--CC---c-------chhhhc--------cccEEEEeCC--CCCcCccc-
Confidence 1111222100 00000 00 0 001111 1235566788 89999765
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc----C--CCCcEE---EeccccC-CCCCCceeeeccHHHH
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL----G--CVPDIA---CYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~----g--v~PDiv---t~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
+.+.+++|.++|++||+++|.||++..|...+.....-.. + -.+.++ +|||.++ .| +.+|+++++++++
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~ 251 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPG-LRSGFIAGDASIL 251 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcc-ceeEEEecCHHHH
Confidence 6888999999999999999999999877322222111111 1 113444 6799864 56 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
+.+.... ...++..+.++.+++.+++. ++++.+++++..++.++.+. +.+ + +. ...-|.++.
T Consensus 252 ~~~~~~~------~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~----~~l---~-~~-~p~gg~fi~ 313 (374)
T PRK05839 252 KKYKAYR------TYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAR----EIL---G-IT-IPPATFYVW 313 (374)
T ss_pred HHHHHHH------hhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHH----Hhc---C-CC-CCCeeEEEE
Confidence 8875411 11233455566666665553 34445444444444333322 222 1 11 233466777
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+.+ ..+++.+|++ +||.+.|+ .+.+|++. ..+++++.+++++|.++++
T Consensus 314 ~~~~~-----------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 314 LPVDN-----------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred EeCCC-----------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence 77642 2467778875 99999873 15788864 4578999999999988764
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-09 Score=122.65 Aligned_cols=210 Identities=10% Similarity=0.031 Sum_probs=126.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc-EE---EeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-iv---t~sKgLg-g 693 (863)
-+.+++.| ++..|.+. +.+-+++|.++|++||+++|.||++..|-..+.. -....+.-.++ ++ +|||.++ .
T Consensus 178 k~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 178 DIIYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT 254 (409)
T ss_pred eEEEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence 34556788 78999655 7888999999999999999999999877333321 11111111122 33 6899996 7
Q ss_pred CCCCceeeeccHHHHHhhhcCCcc-----ceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKL-----KALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~-----~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
| +.+|++++++++++.+...... .......++ +.+.++..++.++++- ....+.+++++..+..++.+
T Consensus 255 G-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~r~~l---- 328 (409)
T PRK07590 255 G-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP-EGKAQIKELIDYYMENAKII---- 328 (409)
T ss_pred C-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHH----
Confidence 8 8999999999988733110000 000011222 3566777777666641 11233444444444444433
Q ss_pred HHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-------CEEEEecCCCCcHHH
Q 002941 768 IQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-------NVIYLMCGPCSSPEV 838 (863)
Q Consensus 768 ~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-------~~lr~~ppl~~t~ee 838 (863)
.+.+..++ +....+. |.++.+.+.+.- ...+++..|+ ++||++.|+. +.+|+. ...++++
T Consensus 329 ~~~L~~~~-~~~~~~~g~~f~wi~~~~~~--------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~ 397 (409)
T PRK07590 329 REGLESAG-FEVYGGVNAPYIWVKTPDGM--------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSREN 397 (409)
T ss_pred HHHHHhcC-CceecCCcceEEEEECCCCC--------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHH
Confidence 33344443 2223343 567778775421 1356777776 5799998741 578886 3568899
Q ss_pred HHHHHHHHHHH
Q 002941 839 CSQLLLKLYQR 849 (863)
Q Consensus 839 id~~v~~L~~~ 849 (863)
+++++++|.++
T Consensus 398 l~~~l~rl~~~ 408 (409)
T PRK07590 398 VLEAMERIKKA 408 (409)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.5e-10 Score=125.20 Aligned_cols=322 Identities=14% Similarity=0.098 Sum_probs=199.3
Q ss_pred CCCCCcHHHHHHHHHHHHhccccc--CCCC----CChHHHHHHHHHHhhcCCCCC-CeEEEeCChhhHHHHHHHHHHHHH
Q 002941 413 PDATLQIELARDMGYTAARFGHVM--FPEN----VYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKF 485 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~--~~~~----~~~~~~eLae~L~~~~p~~~~-~~v~f~~SGSeAvE~ALklA~r~~ 485 (863)
.|. ..+.|.+++.+.+....... .... ..+...+..++|+++++.+ . +.++|+.++++|++.++.......
T Consensus 8 ~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~-~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 8 TGP-MPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAP-PDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp S-B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSS-TTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred ccC-CCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCc-cccccccccccchhhhhhhhcccccc
Confidence 344 57889999999887643211 0111 1244567888888888854 3 579999999999999888763111
Q ss_pred HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc
Q 002941 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (863)
Q Consensus 486 ~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (863)
. . ..+|++....|++.......+.. .. +. .+..++.+
T Consensus 86 --~----~------------g~~vl~~~~~~~s~~~~~~~~~~---~~-----------g~-----------~v~~i~~~ 122 (371)
T PF00266_consen 86 --K----P------------GDEVLVTSNEHPSNRYPWEEIAK---RK-----------GA-----------EVRVIPAD 122 (371)
T ss_dssp --T----T------------TCEEEEEESSHHHHHHHHHHHHH---HT-----------TE-----------EEEEEEEG
T ss_pred --c----c------------ccccccccccccccccccccccc---cc-----------hh-----------hhcccccc
Confidence 1 1 25799999988886522211110 00 00 00111111
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
. +..-| .+.+++.+. .++..|++--+ ....|.+.| +++
T Consensus 123 ~---------------------~~~~~--------~~~~~~~l~--------~~~~lv~~~~~-~~~tG~~~p----i~~ 160 (371)
T PF00266_consen 123 P---------------------GGSLD--------LEDLEEALN--------PDTRLVSISHV-ENSTGVRNP----IEE 160 (371)
T ss_dssp T---------------------TSSCS--------HHHHHHHHH--------TTESEEEEESB-ETTTTBBSS----HHH
T ss_pred c---------------------cchhh--------hhhhhhhhc--------cccceEEeecc-cccccEEee----ece
Confidence 0 00011 245556663 45667777776 777898887 999
Q ss_pred HHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccce----
Q 002941 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKA---- 719 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~---- 719 (863)
|.++|+++|+++++|=+| ++|.. ..-.+. ..+|++++| | |.|+ .-+|.+.++++..+.+........
T Consensus 161 I~~~~~~~~~~~~vD~~~-~~g~~--~id~~~--~~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~ 233 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQ-SAGCV--PIDLDE--LGADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDF 233 (371)
T ss_dssp HHHHHHHTTSEEEEE-TT-TTTTS--S--TTT--TTESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTH
T ss_pred ehhhhhccCCceeEechh-ccccc--cccccc--cccceeeecccc-cCCC-Cchhhheehhhhhhcccccccccccccc
Confidence 999999999999999998 46443 223333 347999875 9 8876 568999999999988853211000
Q ss_pred e-ec-----c--cCC---CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-----eccc
Q 002941 720 L-LH-----G--HSY---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-----VVAL 783 (863)
Q Consensus 720 ~-~~-----~--~T~---~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-----vrg~ 783 (863)
. .. . .-| +.+..+..+..++++.+++.+ .++++++...+.+.+.+. +.+.+.+.- -.-.
T Consensus 234 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~ 308 (371)
T PF00266_consen 234 PSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG-IERIRERIRELAEYLREA----LEELPGIEVLGPDDEPRR 308 (371)
T ss_dssp HHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHTTTEEESSSSCGGBG
T ss_pred ccchhcccccccccccccceeeehhhhHHHHHhhhhccc-cccchhhhhhHHHHHHhh----hhcCCceeEeeecccccc
Confidence 0 00 0 001 246667777788899885433 456666666666655444 334454321 2345
Q ss_pred ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.++.+.+.... ...+.+.|.++||.++.+ ++.+|+++....|++|||++
T Consensus 309 ~~i~~~~~~~~~---------~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 309 PSIVSFNLPGSD---------ADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TTEEEEEETTSS---------HHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cceEEEeecCCC---------HHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 778888885443 577888999999999872 27999999999999999975
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=130.78 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=142.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| .+||+. ..+||
T Consensus 50 r~~~p~~~~le~~la~l~g~---~~~~~~~sG~~Ai~~al~al~~---------~G------------d~Vl~~-~~~~~ 104 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGA---ERAVATATGMSAIQAALMTLLQ---------AG------------DHVVAS-RSLFG 104 (380)
T ss_pred cCCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEe-cCCcc
Confidence 45677889999999998873 5788999999999999975421 12 356664 45666
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.+...+.-.- ...+. .+.+++. .|
T Consensus 105 ~t~~~~~~~~-------------~~~g~-----------~v~~v~~--------------------------~d------ 128 (380)
T TIGR01325 105 STVGFISEIL-------------PRFGI-----------EVSFVDP--------------------------TD------ 128 (380)
T ss_pred hHHHHHHHHH-------------HHhCC-----------EEEEECC--------------------------CC------
Confidence 6543322100 00000 0001111 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. .+..|...+ +++|.++|+++|+++|+||+++.+ .... -.
T Consensus 129 --~~~l~~~i~--------~~tklV~le~p-~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~~-----pl 187 (380)
T TIGR01325 129 --LNAWEAAVK--------PNTKLVFVETP-SNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQQ-----PL 187 (380)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-----ch
Confidence 133444442 24678999976 788887765 899999999999999999998532 1111 12
Q ss_pred CCCCcEEE--eccccCCCCCCc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCVPDIAC--YGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~~Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
...+|+++ ++|.++|+-..+ |++++++++++.+.... ..++. ..+|..++.++..++.+.. ..++..++
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~----~~~g~--~~~p~~a~~~l~~l~tl~~--r~~~~~~~ 259 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYL----RHTGP--AMSPFNAWVLLKGLETLSL--RMQKQFDS 259 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHH----HhhCC--CCCHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 33579886 689998632444 67778888888765311 01222 3456666666666665532 23444555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeE------------------ecccceEEEEEEc
Q 002941 756 RRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~------------------vrg~Gl~~~iel~ 792 (863)
..++.++| +++|.|.. ..|.|.|+.+++.
T Consensus 260 a~~la~~L--------~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 260 ALAIAEWL--------QAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHH--------HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 55554433 34443322 2467899999997
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-09 Score=124.56 Aligned_cols=215 Identities=12% Similarity=0.099 Sum_probs=128.9
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hh-hh---cC---CCCcE----EEec
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DL---LG---CVPDI----ACYG 688 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~-e~---~g---v~PDi----vt~s 688 (863)
+.+|+.| ++..|.+ .+.+.+++|.++|++||+++|.||++..+-..+..+ .. +. ++ ..||. -+||
T Consensus 202 ~l~l~nP--~NPTG~~-~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~S 278 (496)
T PLN02376 202 GLILTNP--SNPLGTM-LDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLS 278 (496)
T ss_pred EEEEcCC--CCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEecc
Confidence 4566777 7899965 478889999999999999999999998774444322 11 11 11 23452 2689
Q ss_pred cccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh-HHHHHHHHHHHHHH
Q 002941 689 KLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN-IIPERRILRELWDL 765 (863)
Q Consensus 689 KgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~-l~~~~~~l~~~l~~ 765 (863)
|.++ .| +.+|++++ ++.+.+.+... . .....+.++..++.+.| +++++.++ +.++.+++++.. +
T Consensus 279 K~~glpG-lRvG~li~~~~~l~~~~~~~-------~-~~~~vs~~~Q~a~~~~L---~d~~~~~~~l~~~r~~l~~r~-~ 345 (496)
T PLN02376 279 KDMGLPG-FRVGIVYSFNDSVVSCARKM-------S-SFGLVSSQTQLMLASML---SDDQFVDNFLMESSRRLGIRH-K 345 (496)
T ss_pred ccCCCCc-ceEEEEEECCHHHHHHHHHH-------h-hcCCCCHHHHHHHHHHh---CChhHHHHHHHHHHHHHHHHH-H
Confidence 9996 78 89999998 56666655321 1 11124555555555544 45555332 222222222221 2
Q ss_pred HHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEecC-------CEEEEecCCCCcH
Q 002941 766 ELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPLG-------NVIYLMCGPCSSP 836 (863)
Q Consensus 766 ~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~g-------~~lr~~ppl~~t~ 836 (863)
.+.+.+.++. +..+.. -|+++.+++.... ..........++++.+.+ .||.+.|+. +.+|+... ..++
T Consensus 346 ~l~~~L~~~g-i~~~~~~aG~flwi~l~~~~-~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa-~~~~ 422 (496)
T PLN02376 346 VFTTGIKKAD-IACLTSNAGLFAWMDLRHLL-RDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFA-NMDD 422 (496)
T ss_pred HHHHHHHHCC-CcccCCCceEEEEEEchhhh-ccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEee-CCCH
Confidence 2233444443 223333 4588888885421 000001123567887776 599998741 56777532 2578
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
+++++++++|.+++.+-.
T Consensus 423 ~~l~~al~rl~~~l~~~~ 440 (496)
T PLN02376 423 DTLHVALGRIQDFVSKNK 440 (496)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999987543
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-09 Score=120.17 Aligned_cols=307 Identities=15% Similarity=0.132 Sum_probs=177.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+..+. +.++ -.|.+.+++.+.+.+... ..++..-..+|.+.|+++++-. .+.+++++++++++...++
T Consensus 19 ~~i~l~~~~--~~~~--~~~~~~~~~~~~~~~~~~---~~Y~~~g~~~lr~~ia~~~~~~-~~~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 19 YRIWLDKNE--NPFD--LPEELKEEIFEELKRVPF---NRYPHITSDPLREAIAEFYGLD-AENIAVGNGSDELISYLVK 90 (337)
T ss_pred ceEEecCCC--CCCC--CCHHHHHHHHHHhhcCcc---ccCCCCCHHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHHH
Confidence 456666532 3455 368999999888754221 1233333456777777777533 3689999999998865544
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. .| .+|++..-+|......+ ...| .
T Consensus 91 ~~-----------~g------------d~V~v~~P~y~~~~~~~-~~~g------------------------------~ 116 (337)
T PRK03967 91 LF-----------EG------------KHIVITPPTFGMYSFYA-KLNG------------------------------I 116 (337)
T ss_pred Hh-----------CC------------CeEEEeCCChHHHHHHH-HHcC------------------------------C
Confidence 22 12 46888888886432211 1101 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+++|.. +.+ .-| .+.+++.+. ..-+.+++.| ++..|...+
T Consensus 117 ~~~~v~~~-----------------~~~--~~d--------~~~l~~~~~--------~~~~v~~~~P--~NPtG~~~~- 158 (337)
T PRK03967 117 PVIDVPLK-----------------EDF--TID--------GERIAEKAK--------NASAVFICSP--NNPTGNLQP- 158 (337)
T ss_pred eEEEeecC-----------------CCC--CcC--------HHHHHHhcc--------CCCEEEEeCC--CCCCCCCCC-
Confidence 00111100 000 001 122333221 1224567788 789997765
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~ 715 (863)
.++|.+++ ++++++|+||++..|. ..... ......++++ +|||.++ .| +.+|++++++++++.+...
T Consensus 159 ---~~~l~~i~-~~~~~ii~De~y~~~~-~~~~~--~~~~~~~~vi~l~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~- 229 (337)
T PRK03967 159 ---EEEILKVL-ETGKPVVLDEAYAEFS-GKSLI--GLIDEYPNLILLRTFSKAFGLAG-IRAGYAIANEEIIDALYRI- 229 (337)
T ss_pred ---HHHHHHHH-hcCCEEEEECchhhhc-ccchH--HHHhhCCCEEEEecchHhhcchh-hhheeeecCHHHHHHHHhh-
Confidence 35667777 4799999999998873 11211 1112234554 5799998 88 8999999999999888642
Q ss_pred ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC
Q 002941 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (863)
Q Consensus 716 ~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~ 795 (863)
..+++.+.++.+++.++|+ +.++..+..+.....++.+ .+.+.++. ..+.|.++.+.+
T Consensus 230 -------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l----~~~L~~~~----~~~~~~~~~~~~---- 287 (337)
T PRK03967 230 -------KPPFSLNILTMKIVRLALD---HYDLIEERIDYIIKERERV----RRELGEYA----YPSDANFLLLKL---- 287 (337)
T ss_pred -------cCCCCCCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHH----HHHhccCc----CCCCCcEEEEhH----
Confidence 1234557778888877775 3333322222222223322 22333321 234455555433
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+.+.|.++||.+++.+ +.+|+. ..+.++.++++++|++..+
T Consensus 288 -----------~~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 288 -----------DAYDYLLENGIVVRKLSGRLEGHIRVT---VGKREENDEFIKALKEIKE 333 (337)
T ss_pred -----------HHHHHHHHCCEEEEeCCCCCCCeEEEe---cCCHHHHHHHHHHHHHHHH
Confidence 15788889999998642 578886 4467788888888877654
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-09 Score=122.19 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=129.5
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch--hh---hcCC-C-Cc-EE---Eecc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--AD---LLGC-V-PD-IA---CYGK 689 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a--~e---~~gv-~-PD-iv---t~sK 689 (863)
+.+++.| ++..|. +.+++.+++|.++|++||+++|+||++..+-..+..|. .+ ..+. . ++ ++ .|||
T Consensus 203 ~lll~nP--~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK 279 (447)
T PLN02607 203 GVLITNP--SNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSK 279 (447)
T ss_pred EEEEeCC--CCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchh
Confidence 5666778 788885 55788999999999999999999999976422222221 11 1121 1 33 33 5799
Q ss_pred ccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHH-hHHHHHHHHHHHHHH
Q 002941 690 LLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNH-NIIPERRILRELWDL 765 (863)
Q Consensus 690 gLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~-~l~~~~~~l~~~l~~ 765 (863)
.+| .| +.+|++++ ++++...+... ..| ..+.++..++.+. ++++++.+ .+.++.+++++...
T Consensus 280 ~fg~~G-lRvG~ivs~n~~l~~~~~~~---------~~~~~~s~~~q~~~~~~---L~d~~~~~~~l~~~r~~l~~~~~- 345 (447)
T PLN02607 280 DLGLPG-FRVGTIYSYNDKVVTTARRM---------SSFTLVSSQTQHLLASM---LSDEEFTENYIRTNRERLRKRYE- 345 (447)
T ss_pred cCCCCc-ceEEEEEEcCHHHHHHHHHH---------hhcCCCCHHHHHHHHHH---hCCchhHHHHHHHHHHHHHHHHH-
Confidence 997 78 89999998 67777766531 122 2344454444443 44555542 23333333333221
Q ss_pred HHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEecC-------CEEEEecCCC-Cc
Q 002941 766 ELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPLG-------NVIYLMCGPC-SS 835 (863)
Q Consensus 766 ~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~g-------~~lr~~ppl~-~t 835 (863)
.+.+.+.+++ +..+++ -|+++.+++.+.-... ......+++..+++ +||++.|+. +.+|+. +. .+
T Consensus 346 ~~~~~L~~~g-i~~~~~~ag~fvw~~L~~~~~~~--~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~--fa~~~ 420 (447)
T PLN02607 346 MIVQGLRRAG-IECLKGNAGLFCWMNLSPLLETP--TREGELALWDSILREVKLNISPGSSCHCSEPGWFRVC--FANMS 420 (447)
T ss_pred HHHHHHHhCC-CCcccCCeeEEEEEEchHhhcCC--CchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEE--eccCC
Confidence 2234444443 223344 4788889886421000 01123567777765 799998742 567765 44 47
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l~~ 855 (863)
++++++++++|.+++.+-+.
T Consensus 421 ~~~l~~gl~Ri~~~l~~~~~ 440 (447)
T PLN02607 421 EDTLEVALKRIHRFMDRRKT 440 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999976544
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=123.89 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=112.2
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccccccCCcchhhhcCCCCcEE--EeccccCCCCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP 697 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~P 697 (863)
..+++.|. .+ ...+ +++|.++|++||+++|+||+| .|+...|... ..+. ..|++ +++|+++ | .+
T Consensus 164 ~v~~~~~~-~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~-~~dv~~~s~sK~l~-G-~~ 230 (402)
T cd00378 164 LIVAGASA-YP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP-GADVVTTTTHKTLR-G-PR 230 (402)
T ss_pred EEEecCcc-cC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-CCcEEEeccccCCC-C-CC
Confidence 44555774 33 3333 889999999999999999997 3432122111 1111 35766 5689994 4 67
Q ss_pred ceeeeccH-HHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 698 LAATLATN-AVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 698 igav~~~~-~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.|++++++ ++++.+.... ..+.++ .++...+++..++..+.+.. .++..+.....++.+.+. +.+++
T Consensus 231 gg~i~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~----L~~~g 299 (402)
T cd00378 231 GGLILTRKGELAKKINSAV------FPGLQGGPHLHVIAAKAVALKEALEPE-FKAYAKQVVENAKALAEA----LKERG 299 (402)
T ss_pred ceEEEeccHHHHHHHHHHh------CccccCCchHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH----HHhCC
Confidence 88888876 8888775321 111122 22333333333444332211 122223333333333222 23333
Q ss_pred C-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-----------cCCEEEEecCCC----CcHHHH
Q 002941 776 T-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----------LGNVIYLMCGPC----SSPEVC 839 (863)
Q Consensus 776 ~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-----------~g~~lr~~ppl~----~t~eei 839 (863)
. +..-...+.++.+.+.+.. . ....+.+.|.++||++.+ ..+.+|+.+... ++++|+
T Consensus 300 ~~~~~~~~~~~~v~v~~~~~~----~---~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di 372 (402)
T cd00378 300 FKVVSGGTDNHLVLVDLRPKG----I---TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEM 372 (402)
T ss_pred CeEeecCCCCeEEEEeCCccC----C---CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHH
Confidence 2 1111123566667765321 0 123566678889999963 125788865543 479999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFD 854 (863)
Q Consensus 840 d~~v~~L~~~l~~l~ 854 (863)
+++++.|.+++.+=+
T Consensus 373 ~~~~~~l~~~~~~~~ 387 (402)
T cd00378 373 EEIADFIARALKDAE 387 (402)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999886533
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-09 Score=118.84 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=120.8
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHH------cCCeEEEecccccccccCCcchhhhcCCCCcEE---Eeccc
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKL 690 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~------~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKg 690 (863)
+.+|++... ++..|... +.+.+++|.++|++ ||+++|.||++..|-..|.... ......++++ +|||.
T Consensus 169 ~~~v~~~~p-~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~ 245 (394)
T PRK06836 169 TKAVIINSP-NNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKS 245 (394)
T ss_pred ceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhh
Confidence 344444433 78888655 67778999999999 9999999999987733332111 0011122333 57999
Q ss_pred cC-CCCCCceeeeccHHHHHh---hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH
Q 002941 691 LT-GGVIPLAATLATNAVFDS---FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (863)
Q Consensus 691 Lg-gG~~Pigav~~~~~i~~~---l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~ 766 (863)
++ .| +.+|++++++++.+. ...-.. ..........+++.+.++...++ +......+.+ .++.+
T Consensus 246 ~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~----~r~~l--- 312 (394)
T PRK06836 246 LSLPG-ERIGYIAVNPEMEDADDLVAALVF--ANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKR----NRDLL--- 312 (394)
T ss_pred ccCcc-eeeEEEecCHHHhhhHHHHHHHHH--HhhccccccCCHHHHHHHHHHhC---ChHHHHHHHH----HHHHH---
Confidence 98 78 899999999876432 110000 00001112445565555554443 3211222222 22222
Q ss_pred HHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHH
Q 002941 767 LIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 767 l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid 840 (863)
.+.++++. +...... |+++.+.+.... ..++++.|.++||.+.|. ++.+|+.. ..++++++
T Consensus 313 -~~~L~~~g-~~~~~~~gg~~~~~~~~~~~---------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~--~~~~~~~~ 379 (394)
T PRK06836 313 -YDGLTELG-FECVKPQGAFYLFPKSPEED---------DVAFCEKAKKHNLLLVPGSGFGCPGYFRLSY--CVDTETIE 379 (394)
T ss_pred -HHHHHhCC-CEeecCCceEEEEEeCCCCC---------HHHHHHHHHhCCEEEECchhcCCCCeEEEEe--cCCHHHHH
Confidence 23334443 2222233 556666554321 456778889999999985 36788865 36899999
Q ss_pred HHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEF 853 (863)
Q Consensus 841 ~~v~~L~~~l~~l 853 (863)
+++++|.+++++.
T Consensus 380 ~~i~~l~~~l~~~ 392 (394)
T PRK06836 380 RSLPAFEKLAKEY 392 (394)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=122.35 Aligned_cols=194 Identities=16% Similarity=0.212 Sum_probs=126.7
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|.+. +.+-++++.+.|+ +++++|+||++..|..... .....+..++++ +|||.+| .| +
T Consensus 155 lv~l~~p--~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~--~~~~~~~~~~vi~~~SfSK~~gl~G-l 227 (364)
T PRK04781 155 LVFLCSP--SNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVPS--AVGLLARYDNLAVLRTLSKAHALAA-A 227 (364)
T ss_pred EEEEcCC--CCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc--hHHHHhhCCCEEEEecChhhccccc-c
Confidence 4455566 78999776 5556667767664 4899999999987742111 112223345555 7899998 78 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh--hhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP--QTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~--~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.+|++++++++++.+... ...++.+.++..++.++|+ +. ++..+..+..+..++.+ .+.++++
T Consensus 228 RvGy~v~~~~l~~~l~~~--------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~r~~l----~~~L~~~ 292 (364)
T PRK04781 228 RIGSLIANAELIAVLRRC--------QAPYPVPTPCAALAEQALS---APALAVTARRVAEVRAERERL----HAALAQL 292 (364)
T ss_pred eeeeeeCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 999999999999988752 2345667777777776664 32 12222222223333333 3444555
Q ss_pred CCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 775 RTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 775 p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.+. .....|.++.+++.+ ..++.+.|.++||.++++ ++.+|+. ..++++.++++++|+
T Consensus 293 ~~~~~~~p~~g~f~~~~~~~-----------~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~ 358 (364)
T PRK04781 293 PGVRRVYPSQGNFLLVRFDD-----------AEAAFQALLAAGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQ 358 (364)
T ss_pred CCCCeECCCCCcEEEEEcCC-----------HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHH
Confidence 4432 345668888887741 346788899999999874 2678886 457888999999887
Q ss_pred HHH
Q 002941 848 QRL 850 (863)
Q Consensus 848 ~~l 850 (863)
+..
T Consensus 359 ~~~ 361 (364)
T PRK04781 359 RTQ 361 (364)
T ss_pred HHH
Confidence 643
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=126.39 Aligned_cols=224 Identities=14% Similarity=0.050 Sum_probs=130.5
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCcc-hhhhc----CC---CCcEE---Ee
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-TADLL----GC---VPDIA---CY 687 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~~-a~e~~----gv---~PDiv---t~ 687 (863)
-+.+++.| ++..|. +.+.+-+++|.++|++||++||.|||+..+-.. |..+ .+..+ |. ...++ +|
T Consensus 273 k~ivl~nP--~NPTG~-vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~ 349 (534)
T PLN02231 273 RALVVINP--GNPTGQ-VLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSV 349 (534)
T ss_pred EEEEEeCC--CCCCCc-CCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEecc
Confidence 35577888 789995 557889999999999999999999999877432 3222 21111 21 12244 57
Q ss_pred ccccC--CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh--cChhh---HHhHHHHHH
Q 002941 688 GKLLT--GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF--KDPQT---NHNIIPERR 757 (863)
Q Consensus 688 sKgLg--gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l--~~~~l---~~~l~~~~~ 757 (863)
||++. .| +.+|++++ ++++++.+..- ...+...+.++.+++..+++-- .++.+ .+...+..+
T Consensus 350 SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~-------~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~ 421 (534)
T PLN02231 350 SKGYYGECG-KRGGYMEVTGFTSDVREQIYKV-------ASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILS 421 (534)
T ss_pred CcccccCCc-cceEEEEEecCCHHHHHHHHHH-------HhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHH
Confidence 99874 47 89999976 68888887541 1223344556666666655310 01111 111111112
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccceEEEE-EEccCCc--CC--CCchHHHHHHHHHHH-HCCcEEEecC--------
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAI-ELQAAGC--NA--GYGSLYAASLLKKLR-EDGVYMRPLG-------- 823 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i-el~~~~~--~~--~~~~~~~~~l~~~l~-e~GV~~~p~g-------- 823 (863)
.+++.. +.+.+.+.+++.+......|.|+.+ .+.-+.. .. .........++..|+ +.||.+.|+.
T Consensus 422 ~~~~r~-~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~ 500 (534)
T PLN02231 422 SLARRA-KTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGT 500 (534)
T ss_pred HHHHHH-HHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCC
Confidence 222211 1233445556666666677776665 3321100 00 000001223556555 6799998742
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
..+|++ +..+++++++++++|.+.++++-+.+
T Consensus 501 ~~~Rit--~~~~~e~l~eal~RL~~~~~~~~~~~ 532 (534)
T PLN02231 501 WHFRCT--ILPQEDKIPAIVSRLTEFHKSFMDEF 532 (534)
T ss_pred CeEEEE--eCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 247775 46789999999999999888765543
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-09 Score=113.10 Aligned_cols=331 Identities=14% Similarity=0.082 Sum_probs=196.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
..+|+-|-..+.+ -.++.+|+.++.---... +..+-..+|+++.++++|+ +..+|++||+..|..|++
T Consensus 22 ~~vDLRSDTvT~P-----TdeMr~am~eA~vgDdVy----GeD~tt~rLE~~vA~l~GK---EAgLFv~SGTmgNllaIm 89 (384)
T KOG1368|consen 22 RSVDLRSDTVTVP-----TDEMRRAMAEASVGDDVY----GEDPTTNRLEQRVAELFGK---EAGLFVPSGTMGNLLAIM 89 (384)
T ss_pred eccccccccccCC-----hHHHHHHHhhcccCcccc----cCCccHHHHHHHHHHHhCc---cceeeecccccccHHHHH
Confidence 4456655444443 256777777664321111 2355678999999999995 679999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCC-CccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS-YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~s-YHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
.-. +++| ..||.=+.+ -|=+-.|+++. +. +
T Consensus 90 ~Hc----~~rg----------------~eii~gd~~HI~~~E~gg~s~-----l~------------------------g 120 (384)
T KOG1368|consen 90 VHC----HQRG----------------SEIIVGDRAHIHRYEQGGISQ-----LA------------------------G 120 (384)
T ss_pred HHh----cCCC----------------ceEEeccchheeehhccChhh-----hc------------------------c
Confidence 653 1222 345554333 22222222221 10 1
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
++..++- ..+|. . .-++++|+.+..---..+......|.+|-. +...|-.+.
T Consensus 121 v~~~tv~-----------------------~e~dg--t--m~ledIe~~ir~~~GD~H~p~T~LIclENT-~~~~Gg~vl 172 (384)
T KOG1368|consen 121 VHVRTVK-----------------------NENDG--T--MDLEDIEAAIRVPKGDCHMPPTKLICLENT-HNNCGGKVL 172 (384)
T ss_pred ceeEeee-----------------------eCCCC--e--eeHHHHHHhhcCCCCCccCCCceEEEeecc-ccccCceEe
Confidence 1111110 00110 0 003567777752100122334668889987 666666788
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-------CCcE--EEeccccCCCCCCceee-eccHHHH
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-------VPDI--ACYGKLLTGGVIPLAAT-LATNAVF 708 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-------~PDi--vt~sKgLggG~~Pigav-~~~~~i~ 708 (863)
|-+|+.++.++|++||+-|-+|-+. . |-|.-..|+ .-|- +||||||| .|+|-| +++++++
T Consensus 173 Ple~~~~v~~lak~~glkLH~DGAR-----i--~NAavasgV~vk~i~~~fDSVsiCLSKglg---APVGSViVG~k~FI 242 (384)
T KOG1368|consen 173 PLEELDRVKALAKRHGLKLHMDGAR-----I--FNAAVASGVPVKKICSAFDSVSICLSKGLG---APVGSVIVGSKDFI 242 (384)
T ss_pred eHHHHHHHHHHHhccCCeeecchhh-----h--hhHHHHcCCCHHHHHHhhhhhhhhhhccCC---CCcccEEEccHHHH
Confidence 9999999999999999999999442 2 233333343 3454 59999998 466655 5788887
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEec-ccceE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVV-ALGTL 786 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vr-g~Gl~ 786 (863)
+....-.+ ..|+-+.-.-+-||||+-+|+. .-..+....+++..+.+++ ...+ +-..|. -.-.|
T Consensus 243 ~kA~~~RK----alGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~--------~~~~~i~v~v~a~etNi 308 (384)
T KOG1368|consen 243 DKARHFRK----ALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYI--------NTPEEIRVEVPAVETNI 308 (384)
T ss_pred HHHHHHHH----HhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHh--------ccccceeeecchhhcce
Confidence 75331111 1333444455677778877763 2223334444444444432 2333 222333 34457
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..+++.... -.+..+++.+.+.||++.+.. .++|+....-+|+++++.++..+.+.+
T Consensus 309 v~~~l~q~~-------~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 309 VNMVLCQAR-------LTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred eeeeccccc-------CCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 777775442 136778999999999988753 678888777889999999999995443
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-09 Score=118.22 Aligned_cols=193 Identities=16% Similarity=0.123 Sum_probs=120.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
+.+++.| ++..|.+.+ .++|.++|++ ++++|+||++..| ..|........+ .++++ +|||.++ .| +
T Consensus 142 ~i~l~np--~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~-~~~~i~i~S~SK~~~l~G-l 211 (349)
T PRK07908 142 LVVIGNP--TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDD-LPGVLVLRSLTKTWSLAG-L 211 (349)
T ss_pred EEEEcCC--CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCcccccccc-CCCEEEEeecccccCCcc-c
Confidence 4555678 789998876 3467778864 7889999999766 234321211122 23544 5699987 78 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+.... ..+..+++..+++.+.++- ....+.+++++..+..++.+. +.+.++.
T Consensus 212 RiG~~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~r~~l~----~~L~~~~- 277 (349)
T PRK07908 212 RVGYALGAPDVLARLTRGR--------AHWPVGTLQLEAIAACCAP-RAVAEAAADAARLAADRAEMV----AGLRAVG- 277 (349)
T ss_pred eeeeeecCHHHHHHHHhcC--------CCCCccHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHH----HHHHhCC-
Confidence 9999999999998876421 1234455555554444331 111223344444444444443 3333442
Q ss_pred eeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 777 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 777 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.-.. ..|.++.+.+.+ ...+...|.++||.+.++ .+.+|++. .+++++++++++|++
T Consensus 278 ~~~~~p~~g~~~~~~~~~-----------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~ 343 (349)
T PRK07908 278 ARVVDPAAAPFVLVRVPD-----------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAE 343 (349)
T ss_pred cEeccCCCceEEEEECCc-----------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHH
Confidence 22222 457777776642 346778888999999873 26888873 578899999999987
Q ss_pred HHH
Q 002941 849 RLE 851 (863)
Q Consensus 849 ~l~ 851 (863)
.+.
T Consensus 344 ~~~ 346 (349)
T PRK07908 344 ILK 346 (349)
T ss_pred HHh
Confidence 654
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-09 Score=120.00 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=113.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CC-cchhhh-cCCCCcEE---EeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV-ETTADL-LGCVPDIA---CYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~-~~a~e~-~gv~PDiv---t~sKgLg 692 (863)
++.-++..| ++..|.. .+.+.+++|.++|++||+++|.||++..|... +. ...... .+..++++ +|||.++
T Consensus 173 ~~~~i~~~p--~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 249 (396)
T PRK09257 173 DVVLLHGCC--HNPTGAD-LTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG 249 (396)
T ss_pred CEEEEeCCC--CCCCCCC-CCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc
Confidence 333334555 8999965 48888999999999999999999999888532 11 111111 11223444 6799998
Q ss_pred C-CCCCceeeec---cHHH----HHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChh-------hHHhHHHHH
Q 002941 693 G-GVIPLAATLA---TNAV----FDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQ-------TNHNIIPER 756 (863)
Q Consensus 693 g-G~~Pigav~~---~~~i----~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~-------l~~~l~~~~ 756 (863)
- | +.+|++++ +++. +..+.. ....++. .++++..++.+.|+ +.+ ..+++++..
T Consensus 250 ~~G-lRiG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~ 318 (396)
T PRK09257 250 LYG-ERVGALSVVAEDAEEADRVLSQLKA-------TIRTNYSNPPAHGAAIVATILN---DPELRAEWEAELEEMRERI 318 (396)
T ss_pred ccc-ccceeEEEEeCCHHHHHHHHHHHHH-------HhhhhcCCCcHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHH
Confidence 4 8 89999873 4443 333321 0112222 35666666555553 321 222333333
Q ss_pred HHHHHHHHHHHHHHHhcCC---CeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCC
Q 002941 757 RILRELWDLELIQQISSHR---TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p---~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl 832 (863)
+..++.+. +.+.++. .+...... |+++.+.+. ...+.+.+.++||++.|.+ ||.. .
T Consensus 319 ~~rr~~l~----~~L~~~~~~~~~~~~~p~gg~~~w~~l~------------~~~~~~l~~~~~V~~~p~~---ri~~-~ 378 (396)
T PRK09257 319 KAMRQLLV----EALKAKGPSRDFDFIARQRGMFSYSGLT------------PEQVDRLREEFGVYAVGSG---RINV-A 378 (396)
T ss_pred HHHHHHHH----HHHHhcCCCCCcccccccceEEEecCCC------------HHHHHHHHHcCCEEEcCCC---eEEE-e
Confidence 34444333 3333332 12222333 455556542 1223444567899998865 4432 1
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l 850 (863)
+.++++|++++++|.+++
T Consensus 379 ~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 379 GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred eCCHHHHHHHHHHHHhhC
Confidence 489999999999998753
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-09 Score=117.61 Aligned_cols=185 Identities=14% Similarity=0.045 Sum_probs=106.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEE--EeccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--t~sKgLggG~~ 696 (863)
...++..| .+..|.+.+ +++|.++|++||+++++|+++.++............++ ..|.+ ++.|.++++ .
T Consensus 150 ~~v~~~~~--~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~ 222 (345)
T cd06450 150 IMVVATAG--TTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-L 222 (345)
T ss_pred EEEEEecc--cCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-c
Confidence 34455666 466777654 89999999999999999999965421111111001111 35755 457988765 4
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
..|+++.+ +++..++++.+....+ ++..+....+.+.+. +.+.+.+.
T Consensus 223 g~g~~~~~----------------------------~~~~~~~l~~l~~~g~-~~~~~~~~~~~~~l~----~~L~~~~~ 269 (345)
T cd06450 223 GCSAVLVR----------------------------ALKLWATLRRFGRDGY-GEHIDRIVDLAKYLA----ELIRADPG 269 (345)
T ss_pred chHHHHHH----------------------------HHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHH----HHHhcCCC
Confidence 55555444 3344455555544332 233333333444333 33444554
Q ss_pred eeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-c----CCEEEEecCCCC-cHHHHHHHHHHHHH
Q 002941 777 VQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-L----GNVIYLMCGPCS-SPEVCSQLLLKLYQ 848 (863)
Q Consensus 777 v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-~----g~~lr~~ppl~~-t~eeid~~v~~L~~ 848 (863)
+.-+ ...+.++.+.+.... .......++.+.|.++|+++.+ . +..+|+++...+ |++|+|++++.|++
T Consensus 270 ~~~~~~~~~~iv~f~~~~~~----~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 270 FELLGEPNLSLVCFRLKPSV----KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEEecCCceeEEEEEECCcc----hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 3222 124456666665320 0012356788899999655433 1 368899877664 99999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-09 Score=121.93 Aligned_cols=202 Identities=13% Similarity=0.163 Sum_probs=119.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCcEE---Eecccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDiv---t~sKgL 691 (863)
+...++..| ++..|... +.+.+++|.++|++||+++|.||++..|-..+. .-....+ ...++++ +|||.+
T Consensus 177 ~~~~~~~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~ 253 (404)
T PTZ00376 177 SVVLLHACA--HNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM 253 (404)
T ss_pred CEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence 344445667 89999655 788899999999999999999999987743221 1011111 1122344 679999
Q ss_pred C-CCCCCceee---eccHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChh----hHHhHHH---HHHHH
Q 002941 692 T-GGVIPLAAT---LATNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQ----TNHNIIP---ERRIL 759 (863)
Q Consensus 692 g-gG~~Pigav---~~~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~----l~~~l~~---~~~~l 759 (863)
+ .| +.+|++ ++++++.+.+...-. ....+++. .++++..++.++|+ +++ +.+.+.+ ..+..
T Consensus 254 ~~~G-lRvG~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 326 (404)
T PTZ00376 254 GLYG-ERIGALHIVCANKEEAANVLSQLK---LIIRPMYSSPPIHGARIADRILS---DPELRAEWLSELKEMSGRIQNM 326 (404)
T ss_pred cccc-cccceEEEEeCCHHHHHHHHHHHH---HHHhhhcCCCchHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 78 899998 578876554432100 01123333 35677777776664 332 2222322 22333
Q ss_pred HHHHHHHHHHHHhcCC---CeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEecCCEEEEecCCCC
Q 002941 760 RELWDLELIQQISSHR---TVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p---~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~g~~lr~~ppl~~ 834 (863)
++.+ .+.+.++. ....+...| +++.+.+. .+++..|.++ ||++.|.+ |++.. ..
T Consensus 327 r~~l----~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-------------~~~~~~L~~~~~v~v~p~~---Ris~~-~~ 385 (404)
T PTZ00376 327 RQLL----YDELKALGSPGDWEHIINQIGMFSFTGLT-------------KEQVERLIEKYHIYLLDNG---RISVA-GL 385 (404)
T ss_pred HHHH----HHHHHhcCCCCcccccccCceEEEecCCC-------------HHHHHHHHHhCCEeecCCC---eEEEe-cc
Confidence 3333 33333332 122223444 44444431 2467777766 99999875 55421 37
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
+.+++++++++|++++.
T Consensus 386 ~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 386 TSKNVDYVAEAIHDVVR 402 (404)
T ss_pred CHHhHHHHHHHHHHHHh
Confidence 99999999999998765
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=117.71 Aligned_cols=211 Identities=16% Similarity=0.089 Sum_probs=129.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLggG~~ 696 (863)
.+.+++.| ++..|.+. +.+-+++|.++|++||+++|.||++.-+ .....+....-...+.++ +|||....| +
T Consensus 181 ~~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~~~~vI~~~SfSK~~~pG-l 255 (416)
T PRK09440 181 GAICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLWNPNIILCMSLSKLGLPG-V 255 (416)
T ss_pred eEEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccccCCeEEEecccccCCCc-c
Confidence 45666677 78999665 7888999999999999999999999422 111100000001123333 689976677 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH----HHHHHHHHHHHHHHHHHh
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP----ERRILRELWDLELIQQIS 772 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~----~~~~l~~~l~~~l~~~~~ 772 (863)
.+|++++++++++.+... ......+.+.++..++.+.|+ +.++...+.+ .-+..++.+.+.+.+.+.
T Consensus 256 RiG~~i~~~~l~~~~~~~------~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~ 326 (416)
T PRK09440 256 RCGIVIADEEIIEALSNM------NGIISLAPGRLGPAIAAEMIE---SGDLLRLSETVIRPFYRQKVQLAIALLRRYLP 326 (416)
T ss_pred eEEEEeCCHHHHHHHHHH------HHHhccCCCcHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999887641 112234557777777777664 3333333222 112222222222222222
Q ss_pred cCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----C---------CEEEEecCCCCcHH
Q 002941 773 SHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----G---------NVIYLMCGPCSSPE 837 (863)
Q Consensus 773 ~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g---------~~lr~~ppl~~t~e 837 (863)
... +.-+... |.++.+++.... . ...++.+.|.++||.+.|+ + +.+|+.. +.+++
T Consensus 327 ~~~-~~~~~p~gg~fiw~~~~~~~----~---~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~--~~~~~ 396 (416)
T PRK09440 327 DEP-CLIHKPEGAIFLWLWFKDLP----I---TTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNY--VQDDE 396 (416)
T ss_pred cCC-eEEecCCCceEEEEECCCCC----C---CHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEe--cCCHH
Confidence 221 2223444 677778775411 0 1456778889999999873 1 2578753 35789
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
++++++++|.+++++..
T Consensus 397 ~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 397 EIEKGIAILAEEVEKAY 413 (416)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887643
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-08 Score=118.67 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=128.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch--hhhc------CC--CCcEE---Ee
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLL------GC--VPDIA---CY 687 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a--~e~~------gv--~PDiv---t~ 687 (863)
+.+++.| ++..|.. .+.+.+++|.++|++||+++|.||++..+-..+..+. .... +. .+.++ +|
T Consensus 194 ~v~l~nP--~NPTG~~-~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~ 270 (468)
T PLN02450 194 GVLITNP--SNPLGTT-TTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSL 270 (468)
T ss_pred EEEEecC--CCCCCcc-cCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEec
Confidence 4566778 7888855 5788899999999999999999999987643443221 1111 11 12233 78
Q ss_pred ccccC-CCCCCceeeeccHH-HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH-hHHHHHHHHHHHHH
Q 002941 688 GKLLT-GGVIPLAATLATNA-VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH-NIIPERRILRELWD 764 (863)
Q Consensus 688 sKgLg-gG~~Pigav~~~~~-i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~-~l~~~~~~l~~~l~ 764 (863)
||.++ .| +.+|+++++++ +.+.+... ..+ ...+.++..++.+.|+ ++++.. .+.++.+++++..
T Consensus 271 SK~~~l~G-lRiG~li~~~~~l~~~~~~~-------~~~-~~~s~~~Q~a~~~~L~---~~~~~~~~l~~~~~~l~~rr- 337 (468)
T PLN02450 271 SKDLGLPG-FRVGAIYSNDEMVVSAATKM-------SSF-GLVSSQTQYLLSALLS---DKKFTKNYLEENQKRLKQRQ- 337 (468)
T ss_pred cccCCCCC-ccEEEEEECCHHHHHHHHHH-------hhc-CCCCHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHH-
Confidence 99997 88 89999999744 55655421 111 1245666666666654 443322 2233333333222
Q ss_pred HHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-------CEEEEecCCC-C
Q 002941 765 LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-------NVIYLMCGPC-S 834 (863)
Q Consensus 765 ~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-------~~lr~~ppl~-~ 834 (863)
+.+.+.+.++. +..+.. -|+++.+.+........+ ....+++..++ ++||.+.|+. +.+|+. ++ .
T Consensus 338 ~~l~~~L~~~g-i~~~~~~~g~flwi~l~~~~~~~~~--~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~--f~~~ 412 (468)
T PLN02450 338 KKLVSGLEAAG-IKCLKSNAGLFCWVDMRHLLKSNTF--EAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVC--FANM 412 (468)
T ss_pred HHHHHHHHHcC-CcccCCCceEEEEEEchHhcCcCCc--hHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEE--ecCC
Confidence 12334444443 222333 466778887532101111 12345666666 5799998752 567775 44 5
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~ 854 (863)
+++++++++++|.+++.+..
T Consensus 413 ~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 413 SEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987654
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-08 Score=118.04 Aligned_cols=343 Identities=17% Similarity=0.173 Sum_probs=214.0
Q ss_pred eEEeeecccccc-cCCCCCcHHHHHHHHHHHHhcccc-----cCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~-~lGh~~~p~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSe 472 (863)
..+|+..|+-.. .+ ....+.+++.+.+...... ....+..+....+++.+...-+-. ..+.++.+++..+
T Consensus 90 ~~i~f~~g~p~~~~f---p~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~ 166 (459)
T COG1167 90 SVIDFAGGLPDPSLF---PLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQ 166 (459)
T ss_pred ceecCCCCCCCcccC---CHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHH
Confidence 677887776322 23 3456666666655433222 111223355567777776322211 1357999988888
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|.+..+++..+ +| ..|++=+-+|||.....-..
T Consensus 167 al~l~~~~l~~---------pG------------d~v~vE~PtY~~~~~~~~~~-------------------------- 199 (459)
T COG1167 167 ALDLLLRLLLD---------PG------------DTVLVEDPTYPGALQALEAL-------------------------- 199 (459)
T ss_pred HHHHHHHHhCC---------CC------------CEEEEcCCCcHHHHHHHHHc--------------------------
Confidence 99987776621 12 57888888999863221111
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
|+..+++|-.. ..-| .+.+|+.+.+ .++-++.+-|..|+.
T Consensus 200 -----g~~~~~vp~d~--------------------~G~~--------~e~le~~~~~-------~~~k~~y~~P~~qNP 239 (459)
T COG1167 200 -----GARVIPVPVDE--------------------DGID--------PEALEEALAQ-------WKPKAVYVTPTFQNP 239 (459)
T ss_pred -----CCcEEecCCCC--------------------CCCC--------HHHHHHHHhh-------cCCcEEEECCCCCCC
Confidence 11112233100 0111 2456666653 367899999998999
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc----EEEeccccCCCCCCceeeeccHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD----ivt~sKgLggG~~Pigav~~~~~i 707 (863)
.|..+ +.+=-++|.++|++||+++|=||++.-|-..+..- ....++- ++ +-+|||.|.-| +.+|++++++++
T Consensus 240 tG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~ 316 (459)
T COG1167 240 TGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLAPG-LRLGYVVAPPEL 316 (459)
T ss_pred CCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcccc-cceeeeeCCHHH
Confidence 99766 66778999999999999999999998774343321 1222221 33 34899999999 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC-C-CeeEe-cccc
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH-R-TVQRV-VALG 784 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~-p-~v~~v-rg~G 784 (863)
++.+... .+..+.+.+.+..++...-|. +..+..++.+.-+..+++.. .+.+.+.++ | .+.-. ..-|
T Consensus 317 ~~~~~~~------k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~y~~rr~-~l~~~L~~~~~~~~~~~~p~gG 386 (459)
T COG1167 317 IEKLLRL------KQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRREYARRRD-ALLEALAEYLPELATWTRPEGG 386 (459)
T ss_pred HHHHHHH------HHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCeeeecCCce
Confidence 9988642 244566667777665555444 33333343333333333222 233444444 3 33322 2347
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+++.+++...- ....+...++++||.+.|. .+.+|+.. ...+++++++.++.|.+++.+..
T Consensus 387 ~flwl~l~~~~--------~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~-s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 387 LFLWLELPEGI--------DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSF-SSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred EEEEEEcCCCC--------CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999998652 2678999999999999872 25788863 35578999999999999887654
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-08 Score=115.55 Aligned_cols=340 Identities=12% Similarity=0.104 Sum_probs=209.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC-CC-----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~-~~-----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
-|+|..+ .+. ....|.+|+.+...++.-... .. ..++...+.-++++++++....+.+.|+.+-++|
T Consensus 24 vylD~aa------~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAA------TSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred EEecCcc------ccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 5777443 222 467888888887765432211 11 1123345566677777774323679999999998
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
.-......-+.. . . ...||+..--+|....-...+.... |.
T Consensus 97 ln~va~~l~~~~--~----~------------gdeIv~s~~EH~sn~~pw~~~~~~~--------------Ga------- 137 (405)
T COG0520 97 LNLVARGLGRSL--K----P------------GDEIVVSDLEHHSNIVPWQELAKRT--------------GA------- 137 (405)
T ss_pred HHHHHHHhhhhh--c----C------------CCEEEEccCcchhhHHHHHHHHHhc--------------Cc-------
Confidence 877666441111 0 1 1579998888888755443332100 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++..+.. .-+ .+.++..+ .++.-.|.+.-+ .+..
T Consensus 138 ----~v~~i~~~~~g---------------------~~~--------~~~~~~~i--------~~~Tklvais~v-Sn~t 175 (405)
T COG0520 138 ----KVRVIPLDDDG---------------------LLD--------LDALEKLI--------TPKTKLVALSHV-SNVT 175 (405)
T ss_pred ----EEEEEecCCCC---------------------CcC--------HHHHHHhc--------CCCceEEEEECc-cccc
Confidence 01111111000 000 13344433 345667888887 8888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.| +++|.++|+++|+++++|=+|+ +|-. -.+.-.+..|.++|| |+|.|- ..+|...+++++.+.+
T Consensus 176 G~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h~----~idv~~l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l 245 (405)
T COG0520 176 GTVNP----VKEIAELAHEHGALVLVDAAQA-AGHL----PIDVQELGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEEL 245 (405)
T ss_pred cccch----HHHHHHHHHHcCCEEEEECccc-cCcc----CCCchhcCCCEEEEcccccccCC-CceEEEEEchHHHhhc
Confidence 98888 9999999999999999999984 4311 111122357999997 888875 5689999999999987
Q ss_pred hcC---Cccc--eee-cccCC----------CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 712 VGD---SKLK--ALL-HGHSY----------SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 712 ~~~---~~~~--~~~-~~~T~----------~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.+. .... ... ...++ +.|..+..+..++++++++-+ .+++.+..+.+.+++ .+.+++.|
T Consensus 246 ~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig-~~~i~~~e~~L~~~~----~~~L~~~~ 320 (405)
T COG0520 246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIG-MEAIEAHERELTEYL----LEGLSELP 320 (405)
T ss_pred CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHH----HHHHhcCC
Confidence 321 1000 000 11122 234555555678888876544 455666666666544 45566677
Q ss_pred CeeEec----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-------------CEEEEecCCCCcHHH
Q 002941 776 TVQRVV----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------------NVIYLMCGPCSSPEV 838 (863)
Q Consensus 776 ~v~~vr----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------------~~lr~~ppl~~t~ee 838 (863)
.+.-.. .++.++.+.+.... ..+++..|.++||.++... ..+|+++.+..|+||
T Consensus 321 ~v~i~g~~~~~r~~~vsF~v~~~~---------~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~ed 391 (405)
T COG0520 321 GVEIYGPPDADRGGIVSFNVKGIH---------PHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEED 391 (405)
T ss_pred CeEEecCCcccCceEEEEEeCCCC---------HHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHH
Confidence 543221 35677777776542 6789999999998888642 239999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLE 851 (863)
Q Consensus 839 id~~v~~L~~~l~ 851 (863)
||+++++|++...
T Consensus 392 id~l~~aL~~~~~ 404 (405)
T COG0520 392 VDRLLEALKKALA 404 (405)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-09 Score=119.92 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=119.1
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
..+|+.| ++..|.+.+ .+.+++|.+.|+ ++++|+||++..|... . .........+.++ +|||.++ .| +
T Consensus 150 li~i~nP--~NPTG~~~~-~~~l~~l~~~~~--~~~vivDeay~~~~~~-~-s~~~~~~~~~~~iv~~S~SK~~~l~G-l 221 (354)
T PRK04635 150 LVFICNP--NNPTGTVID-RADIEQLIEMTP--DAIVVVDEAYIEFCPE-Y-SVADLLASYPNLVVLRTLSKAFALAG-A 221 (354)
T ss_pred EEEEeCC--CCCCCccCC-HHHHHHHHHhCC--CcEEEEeCchHhhccC-c-chHHHHhhCCCEEEEechHHHhhhhH-H
Confidence 4566677 799997774 555555555554 5999999999877421 1 1111112234544 6799987 67 7
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+... ...++.+....+++.++|+.- ..+...+..+..+..++. +.+.+.+++.
T Consensus 222 RlG~~i~~~~~~~~l~~~--------~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~r~~----l~~~L~~~~~ 288 (354)
T PRK04635 222 RCGFTLANEELIEILMRV--------IAPYPVPLPVSEIATQALSEA-GLARMKFQVLDLNAQGAR----LQAALSMYGG 288 (354)
T ss_pred HHhhhhCCHHHHHHHHhh--------cCCCCCCHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH----HHHHHHhCCC
Confidence 999999999999887631 123445556666666666421 111122222222222333 3344455553
Q ss_pred eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 777 v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+......|.++.+.+.+ ...+.+.|.++||.++..+ +.+|++ ..+++++++++++|++
T Consensus 289 ~~~~~~~g~f~~~~~~~-----------~~~~~~~l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~ 351 (354)
T PRK04635 289 AKVLEGNGNYVLAKFDD-----------VDAVFKALWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRN 351 (354)
T ss_pred ceECCCCCcEEEEECCC-----------HHHHHHHHHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHH
Confidence 33345567777776641 3467788999999998642 578987 4588999999998865
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-08 Score=115.39 Aligned_cols=333 Identities=13% Similarity=0.076 Sum_probs=178.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHH---hcccccCC----CC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAA---RFGHVMFP----EN-VYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~---~~~~~~~~----~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGS 471 (863)
-|+|..+ .+- -++.+.+|+.+.+. .+...... .. ..+...++.++++++++.+ .+.++|++||+
T Consensus 5 iyld~a~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSA------TTP-VDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGAT 76 (404)
T ss_pred EEecCcC------CCC-CCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHH
Confidence 6888554 233 46889999888775 22211100 00 0134557778889988753 35699999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+|+..+++.+.+.+. + .| ..||+....|+. ...+...-. ..+ .
T Consensus 77 ~al~~~l~~l~~~~~---~--~g------------d~Vi~~~~~~~s-~~~~~~~~~---~~g-----------~----- 119 (404)
T PRK14012 77 ESDNLAIKGAAHFYQ---K--KG------------KHIITSKTEHKA-VLDTCRQLE---REG-----------F----- 119 (404)
T ss_pred HHHHHHHHHHHHhhc---C--CC------------CEEEEecCccHH-HHHHHHHHH---hCC-----------C-----
Confidence 999999987632111 1 11 456666655443 322221100 000 0
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg 631 (863)
.+..++.+..+ .-| .+.+++.+. .+..+|++..+ ++
T Consensus 120 ------~~~~v~~~~~g---------------------~~d--------~~~l~~~i~--------~~t~lv~~~~~-~n 155 (404)
T PRK14012 120 ------EVTYLDPQSNG---------------------IID--------LEKLEAAMR--------DDTILVSIMHV-NN 155 (404)
T ss_pred ------EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCCEEEEEECc-CC
Confidence 00111111000 001 244555553 23456777776 78
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|.+.+ +++|.++|++||+++|+|++|+ +|..- .-.. ...+|+++++ |.+|. ..+|+++++++...
T Consensus 156 ~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp--~g~G~l~~~~~~~~ 224 (404)
T PRK14012 156 EIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP--IDLS--KLKVDLMSFSAHKIYGP--KGIGALYVRRKPRV 224 (404)
T ss_pred Cccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc--cCcc--cCCCCEEEEehhhccCC--CceEEEEEecCCCC
Confidence 8898776 8999999999999999999994 54331 1111 2358999887 96642 24678888766432
Q ss_pred hhhcCCccceeeccc-------CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--
Q 002941 710 SFVGDSKLKALLHGH-------SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-- 780 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~-------T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-- 780 (863)
.+.. ..++. ..+.+...+.+..++++.++. . .+...++.+.+.+.+. +.+++.+.+.-.
T Consensus 225 ~~~~------~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~-~~~~~~~~~~l~~~l~----~~L~~~~~i~~~~~ 292 (404)
T PRK14012 225 RLEA------QMHGGGHERGMRSGTLPTHQIVGMGEAARIAKE-E-MATENERIRALRDRLW----NGIKDIEEVYLNGD 292 (404)
T ss_pred CCCc------eecCCCccCCccCCCcCHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHH----HHHhcCCCEEEeCC
Confidence 2211 01111 111233344444466666532 1 2233444445555443 333444533211
Q ss_pred ---cccce-EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE----Ee------------------cCCEEEEecCCCC
Q 002941 781 ---VALGT-LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM----RP------------------LGNVIYLMCGPCS 834 (863)
Q Consensus 781 ---rg~Gl-~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~----~p------------------~g~~lr~~ppl~~ 834 (863)
+..+. .+.+.+.+ ...+...|.+.+|-. .+ ..+.+|+.+...+
T Consensus 293 ~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~ 361 (404)
T PRK14012 293 LEQRVPGNLNVSFNYVE-----------GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 361 (404)
T ss_pred ccccCCCEEEEEEeCcC-----------HHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCC
Confidence 11111 22222211 122333333222211 11 1367899988889
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~~ 855 (863)
|++|+|.+++.|+++++.+++
T Consensus 362 t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 362 TEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887653
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-10 Score=127.27 Aligned_cols=169 Identities=11% Similarity=0.055 Sum_probs=103.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
+..+|++|-. .+..|.+.+ +++|.++|+++|+++|+||+++ .+-.+... .+ ..|+++. +|.++|.-.
T Consensus 146 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~pl---~~--g~Div~~S~sK~l~g~g~ 214 (386)
T PRK06767 146 NTKLIFVETP-INPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQRPL---EL--GCDAVVHSATKYIGGHGD 214 (386)
T ss_pred CceEEEEeCC-CCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hc--CCcEEEecCcceecCCCC
Confidence 3457777765 788887776 8999999999999999999984 22222221 12 3487754 699976326
Q ss_pred Cc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 697 PL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 697 Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
++ |+++++++.++.+.... +. ..+. ..+|..+++++..|+.+. ...++..+++.++. +.++++|
T Consensus 215 ~~gG~v~~~~~~i~~~~~~~--~~-~~g~--~~~~~~a~l~~~~L~tl~--~r~~~~~~~a~~la--------~~L~~~p 279 (386)
T PRK06767 215 VVAGVTICKTRALAEKIRPM--RK-DIGG--IMAPFDAWLLLRGLKTLA--VRMDRHCDNAEKIV--------SFLKNHD 279 (386)
T ss_pred ceeEEEEeChHHHHHHHHHH--HH-HhCC--CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHH--------HHHHcCC
Confidence 75 77888888776543210 00 1122 135776666665555332 12334444444443 3456777
Q ss_pred CeeEec------------ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 776 TVQRVV------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 776 ~v~~vr------------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
.|..|. +.|.|+.+++.... ..+.+|.+.|...++.+.
T Consensus 280 ~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~-------~~~~~f~~~l~~~~~~~s 329 (386)
T PRK06767 280 AVEGVWYPEGELASRQMKRGGGVISFSIKGGK-------EETQAFINDLHFITIAVS 329 (386)
T ss_pred CccEEECCCcHHHHHhCCCCCceEEEEEcCCH-------HHHHHHHHhCCccEEecC
Confidence 666544 67889999986321 235567777766555444
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-09 Score=118.35 Aligned_cols=201 Identities=10% Similarity=0.033 Sum_probs=121.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-CCCCcEE---EeccccC-C
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv~PDiv---t~sKgLg-g 693 (863)
-+.+|+.| ++..|. +.+.+.+++|.++|++||+++|.||++..|-..+. ......+ +....++ +|||.+| .
T Consensus 175 ~~i~l~nP--~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 175 DIIYLCSP--NNPTGT-VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT 251 (402)
T ss_pred eEEEEeCC--CCCCCc-cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence 35566677 889996 45778899999999999999999999987743222 1111111 1111223 7899996 7
Q ss_pred CCCCceeeeccHHHH--------HhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChh--hHHhHHHHHHHHHHH
Q 002941 694 GVIPLAATLATNAVF--------DSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQ--TNHNIIPERRILREL 762 (863)
Q Consensus 694 G~~Pigav~~~~~i~--------~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~--l~~~l~~~~~~l~~~ 762 (863)
| +.+|+++++++++ ..+.. ....++ +.++++..++.+.++ +.. ...+..+..+..++.
T Consensus 252 G-lRiG~~i~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~ 320 (402)
T TIGR03542 252 G-VRLGWTVVPKELTYADGHSVIQDWER-------RQCTKFNGASYPVQRAAEAAYA---GEGLQPILEAISYYMENARI 320 (402)
T ss_pred C-cceEEEEecHHHhhcchhhHHHHHHH-------HhhhcccCCCHHHHHHHHHHHc---CcchhHHHHHHHHHHHHHHH
Confidence 7 8999999998876 22111 011222 346666666655554 222 122222222222332
Q ss_pred HHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCC
Q 002941 763 WDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPC 833 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~ 833 (863)
+ .+.+++++ +.-..+. |.++.+.+...- ...+++..|+ ++||++.|+ .+.+|+. +.
T Consensus 321 ~----~~~L~~~~-~~~~~~~~~~f~~v~l~~~~--------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~ 385 (402)
T TIGR03542 321 L----RKALEAAG-FKVYGGEHAPYLWVKTPEGI--------SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AF 385 (402)
T ss_pred H----HHHHHhcC-ceecCCCceeEEEEECCCCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ec
Confidence 2 33344443 2223343 567778875421 1346777777 579999874 2578886 44
Q ss_pred CcHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQR 849 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~ 849 (863)
.+++++++++++|.++
T Consensus 386 ~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 386 GKRENIVEACERIKEA 401 (402)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5889999999888765
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-08 Score=118.46 Aligned_cols=197 Identities=12% Similarity=0.060 Sum_probs=117.1
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~ 710 (863)
.|+..+ +++|.++|+++|++|++|++| ++|..+......... ..|+++++ |+|.|.. .|++++++++.+.
T Consensus 193 ~g~~~d----i~~I~~i~~~~ga~l~vDaaq-~~G~i~~~~~~~~~~-~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~~~ 264 (452)
T PTZ00094 193 YPRDID----YKRFREICDSVGAYLMADIAH-TSGLVAAGVLPSPFP-YADVVTTTTHKSLRGPR--SGLIFYRKKVKPD 264 (452)
T ss_pred CCCccC----HHHHHHHHHHcCCEEEEeccc-hhccccCCCCCCCCC-CCcEEEcCCccCCCCCC--ceEEEEecccchH
Confidence 456666 889999999999999999999 577765321111111 47998775 9997642 3556667665543
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~ 787 (863)
+..... ...+..+.-+.++..+++..++|+.+.+.+ +.+++.++.+++.+.| .+. ..+.+.. .....+.
T Consensus 265 l~~~~~-~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L----~~~--g~~v~~~-~~~~~~~ 336 (452)
T PTZ00094 265 IENKIN-EAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAAL----EKR--GYDLVTG-GTDNHLV 336 (452)
T ss_pred HHHhhc-cccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH----HhC--CcEEecC-CCCCceE
Confidence 322100 001111111457788888899999885433 3445555555554433 221 1111110 0011233
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c------CCEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~------g~~lr~~ppl~~t----~eeid~~v~~L~~~l~~ 852 (863)
.+.+.... .....+...|.++||++.. . ...+|+.++..++ ++|++++++.|.+++..
T Consensus 337 ~v~~~~~~-------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 337 LVDLRPFG-------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred eecCCcCC-------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 34443321 0134566777778999952 1 2689999866665 99999999999999875
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-08 Score=115.96 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=121.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe-c-cccC----
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY-G-KLLT---- 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~-s-KgLg---- 692 (863)
..+.++.-| . ..|.+ ..-+++|.++|+++|+++|+|+++. .+-+|.. ....+| .|++++ + |.++
T Consensus 209 t~~V~v~~P--n-~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g 278 (481)
T PRK04366 209 TAALMLTNP--N-TLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHG 278 (481)
T ss_pred CeEEEEeCC--C-Ccccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCC
Confidence 334455556 3 45643 1238999999999999999999984 3333422 122334 598876 3 8776
Q ss_pred CCCCCceeeeccHHHHHhhhcCC---ccceee-------c---ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH
Q 002941 693 GGVIPLAATLATNAVFDSFVGDS---KLKALL-------H---GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~---~~~~~~-------~---~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l 759 (863)
+|--=+|++.+++++.+.+...- ....+. | .-.++++.+.+.++...+..+-.+++. ++.++...+
T Consensus 279 ~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~-~~a~~~~~~ 357 (481)
T PRK04366 279 GGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLR-EVSEDAVLN 357 (481)
T ss_pred CCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 22123456678888877763210 000000 0 112234445555566666655434332 222222233
Q ss_pred HHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----e--cCCEEEEecCC
Q 002941 760 RELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----P--LGNVIYLMCGP 832 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p--~g~~lr~~ppl 832 (863)
.+++.++|.+. ...+. .+.. ..+.+.+..-. .......++.+.|.++|+... | ..+.+++++..
T Consensus 358 a~~l~~~L~~~---~~~~~--~~~~~~~~~~~~~~~~----~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e 428 (481)
T PRK04366 358 ANYLKARLKDI---YDLPY--DRPCMHEFVLSGKKLK----ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTE 428 (481)
T ss_pred HHHHHHHhHhh---CcccC--CCCeeEEEEEECcccc----ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccC
Confidence 33333333332 11111 1110 01112211000 000125679999999999875 2 14689999888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002941 833 CSSPEVCSQLLLKLYQRLEEFDKVEEKLK 861 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l~~~~~~~~ 861 (863)
.+|++|||+++++|.++.+++.+-.+.++
T Consensus 429 ~~t~edid~l~~~l~~i~~~~~~~~~~~~ 457 (481)
T PRK04366 429 TESKETLDAFIAAMKQIAEEAKENPELVK 457 (481)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCcHhHh
Confidence 99999999999999999888765443343
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-09 Score=121.96 Aligned_cols=236 Identities=18% Similarity=0.139 Sum_probs=143.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||+.|+..++...+. .| .+||+... .||
T Consensus 66 r~~~p~~~~le~~lA~l~g~---~~al~~~sG~~Ai~~~l~all~---------~G------------d~Vl~~~~-~~~ 120 (403)
T PRK07810 66 RYGNPTVSMFEERLRLIEGA---EACFATASGMSAVFTALGALLG---------AG------------DRLVAARS-LFG 120 (403)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHHHHhC---------CC------------CEEEEccC-Ccc
Confidence 35677788999999999873 5789999999999998865421 12 45776654 445
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.+.......- ...+ +....++ ..|
T Consensus 121 ~t~~~~~~~~-------------~~~G-------------~~v~~vd------------------------~~d------ 144 (403)
T PRK07810 121 SCFVVCNEIL-------------PRWG-------------VETVFVD------------------------GED------ 144 (403)
T ss_pred hHHHHHHHHH-------------HHcC-------------cEEEEEC------------------------CCC------
Confidence 4433221000 0000 0000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. .+..|.++. +++|.++|++||+++|+||++. .+-.... . .+
T Consensus 145 --~~~l~~ai~--------~~tklV~~esp-~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~~--~-~~ 205 (403)
T PRK07810 145 --LSQWEEALS--------VPTQAVFFETP-SNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQRG--L-PL 205 (403)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCh--h-hc
Confidence 134555553 24568888875 788887765 9999999999999999999984 3222211 1 22
Q ss_pred CCCCcEEEe--ccccCC-CCCCc-eeeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 679 GCVPDIACY--GKLLTG-GVIPL-AATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 679 gv~PDivt~--sKgLgg-G~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
| .|++++ +|.++| | ..+ |+++++++.+. .+.. +........+|..++.++..|+.+.. ..++-.
T Consensus 206 g--aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~------~~~~~g~~~s~~~a~l~l~~L~tl~~--R~~~~~ 274 (403)
T PRK07810 206 G--ADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQK------LMRHTGPALSAFNAWVLLKGLETLAL--RVRHSN 274 (403)
T ss_pred C--CcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHH------HHHHhCCCCCHHHHHHHHhccCcHHH--HHHHHH
Confidence 3 588865 699975 4 445 66777776554 2321 01112235688888888888876632 123333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~ 793 (863)
+++.++. +.++++|.|..|. |.|.|+.+++..
T Consensus 275 ~~a~~~a--------~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 275 ASALRIA--------EFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHHHHH--------HHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 3333333 3456677776665 789999999964
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-08 Score=111.82 Aligned_cols=215 Identities=13% Similarity=0.179 Sum_probs=131.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHH-----cCCeEEEecccccccccCCcc--hhhh-cCCCCcE--E---
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET--TADL-LGCVPDI--A--- 685 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-----~gilLI~DEV~TGfGRtG~~~--a~e~-~gv~PDi--v--- 685 (863)
+...++..| ++..|. +.+++.+++|.++|++ ||+++|.||++..|-..+... .+.. .+..+++ +
T Consensus 147 ~~~~~~~~P--~NPTG~-~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~ 223 (388)
T PRK08637 147 KVIVILNFP--NNPTGY-TPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLD 223 (388)
T ss_pred CEEEEEeCC--CCCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEec
Confidence 344555668 899995 5578889999998886 999999999998884444321 1111 2333343 2
Q ss_pred EeccccC-CCCCCceeeec------cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 686 CYGKLLT-GGVIPLAATLA------TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 686 t~sKgLg-gG~~Pigav~~------~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
++||.++ .| +.+|+++. ++++++.+.... ........++.+.++++++.+.|+ ++.+..++.+....
T Consensus 224 s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~ 297 (388)
T PRK08637 224 GATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKV--KGLIRSNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQI 297 (388)
T ss_pred cccccCCCcc-cceEEEEEccccCCcHHHHHHHHHHH--HHHhhcccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHH
Confidence 5799754 56 89999984 367777764210 000011223567788888877764 45555555444333
Q ss_pred HHHHHHHHHHHHHhcCC---CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-CEEEEecCC
Q 002941 759 LRELWDLELIQQISSHR---TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-NVIYLMCGP 832 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p---~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-~~lr~~ppl 832 (863)
+++... .+.+.+..++ .+.-.. .-|+++.+.+... ...+++..|+ ++||.+.+.+ +.+|+...
T Consensus 298 ~~~r~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~---------~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~- 366 (388)
T PRK08637 298 LKERYE-KTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGV---------DAEELRVHLLEKYGIGTIALNETDLRIAFS- 366 (388)
T ss_pred HHHHHH-HHHHHHHhhCCCCCcccccccceEEEEecCChH---------HHHHHHHHHhhhcceEEEeccCCceEEEee-
Confidence 433221 1223333331 222233 3466777777421 2567888886 6799887654 56887633
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
..+++++++++++|.+++..+
T Consensus 367 ~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 367 CVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHhc
Confidence 367899999999998888654
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=115.00 Aligned_cols=316 Identities=14% Similarity=0.101 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
++..+|+.+.+...... ...+...++++.+++..+ .+.+++++||++|...+++.. . . + +|
T Consensus 11 ~~e~~a~~~~~~~~~~~----~~g~~~~~~e~~la~~~g---~~~~v~~~sgt~aL~~~l~al-~-~----~--pG---- 71 (376)
T TIGR02379 11 GQELEYIAEAISEGKLS----GDGPFSRRCETWLENRTG---TKKALLTPSCTAALEMAALLL-D-I----Q--PG---- 71 (376)
T ss_pred HHHHHHHHHHHHcCCcc----CCcHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C-C----C--Cc----
Confidence 44567777777653221 234668899999999887 468999999999998888754 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
.+||+...+|.+........+... ..++....
T Consensus 72 --------d~Viv~~~t~~~~~~~~~~~G~~~-----------------------------v~vd~d~~----------- 103 (376)
T TIGR02379 72 --------DEVIMPSYTFVSTANAFVLRGAKI-----------------------------VFVDIRPD----------- 103 (376)
T ss_pred --------CEEEECCCCcHHHHHHHHHcCCEE-----------------------------EEEecCCC-----------
Confidence 578888888776432222111000 00111000
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
.+. -| .+.+++.+. .++.+|+ |+ + ..|...+ +++|.++|++||+++|
T Consensus 104 -------~~~--~d--------~~~le~~i~--------~~tk~Ii--p~-~-~~G~~~d----~~~I~~la~~~~i~vI 150 (376)
T TIGR02379 104 -------TMN--ID--------ETLIESAIT--------HRTKAIV--PV-H-YAGVACD----MDTIMALANKHQLFVI 150 (376)
T ss_pred -------cCC--CC--------HHHHHHhcC--------cCceEEE--Ee-C-CCCCccC----HHHHHHHHHHCCCEEE
Confidence 000 01 133444442 1344554 54 3 4565554 7899999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhc---CCccc-e----------
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKLK-A---------- 719 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~---~~~~~-~---------- 719 (863)
.|++|+ +|.. +.-...|..-|+.+|| |.++.| ...|+++++ +++++.+.. .+... .
T Consensus 151 eDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 225 (376)
T TIGR02379 151 EDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYT 225 (376)
T ss_pred EECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcce
Confidence 999994 5432 1112334445889998 999876 567887765 778776652 11000 0
Q ss_pred -eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-Ee-cccceEEEEEEccCCc
Q 002941 720 -LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RV-VALGTLCAIELQAAGC 796 (863)
Q Consensus 720 -~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~v-rg~Gl~~~iel~~~~~ 796 (863)
...++.|-.+.+.+|.+++-|+.+++ +.++-+++.++..+.|.......+...|.+. .. .... ++.+.+....
T Consensus 226 ~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~- 301 (376)
T TIGR02379 226 WRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAH-MFYIKLKDED- 301 (376)
T ss_pred eeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeE-EEEEEECCcC-
Confidence 01345555677888888888887743 1223233333333322110000000111110 11 1111 2344443210
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEe----c-----------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRP----L-----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p----~-----------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
...++.+.|.++||-+++ . ...+.+-.....|++|++.++++|.++
T Consensus 302 -------~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~ 374 (376)
T TIGR02379 302 -------DRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDY 374 (376)
T ss_pred -------CHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHH
Confidence 246788899999998762 0 012333222347999999999999876
Q ss_pred H
Q 002941 850 L 850 (863)
Q Consensus 850 l 850 (863)
+
T Consensus 375 ~ 375 (376)
T TIGR02379 375 L 375 (376)
T ss_pred h
Confidence 4
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=122.23 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=110.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|+++|+++.+ .+.+++++||++|+..++...++ .| ..||.....|.+.
T Consensus 73 ~~~Pt~~~LE~~lA~l~g---~~~~l~~~sG~~Ai~~al~al~~---------~G------------D~Vl~~~~~Y~~~ 128 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEG---TEAAYCTASGMSAISSVLLQLCS---------SG------------GHVVASNTLYGGT 128 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHhC---------CC------------CEEEEcCCcHHHH
Confidence 457889999999999987 36788999999999999976531 12 4677776666332
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
...+....... .+ +....++ ..|
T Consensus 129 -~~~~~~~~~~~------------~G-------------~~~~~~d------------------------~~d------- 151 (418)
T PLN02242 129 -HALLAHFLPRK------------CN-------------ITTTFVD------------------------ITD------- 151 (418)
T ss_pred -HHHHHHhhhhc------------cC-------------ceEEEcC------------------------CCC-------
Confidence 21111000000 00 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +.+..+|++|.. ++..|.+.+ +++|.++|++||+++|+||+++.+ ... ...+|
T Consensus 152 -~e~l~~~i~-------~~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~----~~~~g 213 (418)
T PLN02242 152 -LEAVKKAVV-------PGKTKVLYFESI-SNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLS----PARLG 213 (418)
T ss_pred -HHHHHHhcC-------cCCCEEEEEecC-CCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCC----HHHcC
Confidence 133444442 224668888876 888887764 899999999999999999999644 221 11233
Q ss_pred CCCcEE--EeccccCCCCCCc-eeeeccHHHHHhhhc
Q 002941 680 CVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFVG 713 (863)
Q Consensus 680 v~PDiv--t~sKgLggG~~Pi-gav~~~~~i~~~l~~ 713 (863)
.|++ +++|.++|+-.++ |++++++++++.+..
T Consensus 214 --~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~ 248 (418)
T PLN02242 214 --ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMD 248 (418)
T ss_pred --CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHH
Confidence 5776 5789997643564 788889998888763
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.7e-09 Score=117.96 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=143.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +.++.++||++|+..++...++ .| ..||+.... ||.
T Consensus 61 ~~~p~~~~Le~~iA~~~g~---~~~l~~~sG~~Ai~~al~~ll~---------~G------------d~Vl~~~~~-y~~ 115 (400)
T PRK06234 61 LGNPTSTEVENKLALLEGG---EAAVVAASGMGAISSSLWSALK---------AG------------DHVVASDTL-YGC 115 (400)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHhC---------CC------------CEEEEecCc-cch
Confidence 4567788999999999873 5789999999999888764421 12 457766654 454
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
+.......- ..+ |+....++ ..|
T Consensus 116 ~~~~~~~~~-~~~-------------------------G~~v~~vd------------------------~~d------- 138 (400)
T PRK06234 116 TFALLNHGL-TRY-------------------------GVEVTFVD------------------------TSN------- 138 (400)
T ss_pred HHHHHHHHH-hhC-------------------------CeEEEEEC------------------------CCC-------
Confidence 443221100 000 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhh
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
.+.+++.+. ++..+|++|.. .+..|.+.+ +++|.++|++| |+++|+||++. .+..+..
T Consensus 139 -~e~l~~~i~--------~~tklI~iesP-~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~-~~~~~~~----- 198 (400)
T PRK06234 139 -LEEVRNALK--------ANTKVVYLETP-ANPTLKVTD----IKAISNIAHENNKECLVFVDNTFC-TPYIQRP----- 198 (400)
T ss_pred -HHHHHHHhc--------cCCeEEEEECC-CCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCC-chhcCCc-----
Confidence 134555553 23457888865 788887766 99999999997 99999999985 3222222
Q ss_pred cCCCCcEEE--eccccCCCCCCc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 678 LGCVPDIAC--YGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 678 ~gv~PDivt--~sKgLggG~~Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
.+...|+++ ++|.++|.-..+ |++++++++++.+..... ....+...+|..++.++..|+-+. ...++..+
T Consensus 199 l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~----~~~~g~~l~p~~a~l~~~~l~tl~--~r~~~~~~ 272 (400)
T PRK06234 199 LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI----KDMTGSVIGPFEAFLIIRGMKTLQ--IRMEKHCK 272 (400)
T ss_pred hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHH----HHhcCCCCCHHHHHHHHhccCcHH--HHHHHHHH
Confidence 123468775 579997621454 778899998887653110 112245668888888877776442 23445555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
+..++.++ ++++|.|..| .|.|.|+.+++..
T Consensus 273 na~~~a~~--------L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~ 321 (400)
T PRK06234 273 NAMKVAKF--------LESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG 321 (400)
T ss_pred HHHHHHHH--------HHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC
Confidence 55555543 3444444322 3568899999863
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9e-09 Score=117.71 Aligned_cols=237 Identities=15% Similarity=0.091 Sum_probs=144.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.++.++||++|+..++...++ .| ..||+....|++
T Consensus 60 r~~~p~~~~le~~lA~l~g~---~~~i~~ssG~~Ai~~~l~all~---------~G------------D~Vi~~~~~y~~ 115 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEGA---EAATAFSTGMAAISNTLYTFLK---------PG------------DRVVSIKDTYGG 115 (398)
T ss_pred CCCChHHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcC---------CC------------CEEEEcCCchHH
Confidence 35678889999999999873 5788889999999888865421 12 568888888866
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
......... ..+ |+....++ ..|
T Consensus 116 ~~~~~~~~~--~~~-------------------------Gi~v~~vd------------------------~~d------ 138 (398)
T PRK08249 116 TNKIFTEFL--PRM-------------------------GVDVTLCE------------------------TGD------ 138 (398)
T ss_pred HHHHHHHHH--hhC-------------------------CeEEEEcC------------------------CCC------
Confidence 421100000 000 00000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|-. .+..|.+.+ +++|.++|++||+++|+|+++..+ ..+. ..
T Consensus 139 --~e~l~~~i~--------~~tklV~ie~p-~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~-----~l 197 (398)
T PRK08249 139 --HEQIEAEIA--------KGCDLLYLETP-TNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN-----PL 197 (398)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----ch
Confidence 133444442 24567888765 688887776 899999999999999999998632 2221 11
Q ss_pred CCCCcEEE--eccccCCCCCCc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCVPDIAC--YGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~~Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
....|+++ ++|.++|.--.+ |++++++++++.+..- ........+|..++.++..|+.+.. ..++..++
T Consensus 198 ~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~------~~~~g~~~s~~~a~l~l~~l~tL~~--R~~~~~~n 269 (398)
T PRK08249 198 ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY------REINGATMDPMSAYLILRGMKTLKL--RVRQQQES 269 (398)
T ss_pred hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCcchHHH--HHHHHHHH
Confidence 23467774 579997521333 5667788888876531 1223445678888888777776631 23444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
...+.+ .++++|.|..| .|.|.|+.+++..
T Consensus 270 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 270 AMALAK--------YLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred HHHHHH--------HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 444444 33445544322 3678899999963
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.6e-09 Score=118.08 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=94.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg-G~ 695 (863)
+..+|++|.. .+..|.+.+ +++|.++|++||+++|+||++. .+..+.. .+...|+++ ++|.++| |
T Consensus 144 ~tklV~le~p-~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g- 211 (391)
T TIGR01328 144 NTKIVYFETP-ANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHG- 211 (391)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCC-
Confidence 4567888865 788887765 8999999999999999999984 3333322 233568775 5799985 4
Q ss_pred CC-ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IP-LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~P-igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.+ .|++++++++++.+..... ....+...+|..++.++..|+.+. ...++..+++.++.+.| +++
T Consensus 212 ~~~gG~v~~~~~li~~l~~~~~----~~~~g~~l~~~~a~l~l~~L~tl~--~r~~~~~~na~~la~~L--------~~~ 277 (391)
T TIGR01328 212 DVVAGLICGKAELLQQIRMVGI----KDMTGSVISPFDAWLILRGLKTLN--IRMKRHSENAMKVAEYL--------KSH 277 (391)
T ss_pred CceEEEEEcCHHHHHHHHHHHH----HhCCCCCCCcHHHHHHHhCcCcHH--HHHHHHHHHHHHHHHHH--------HhC
Confidence 44 4667788998877653110 011123457777777777665442 22445555555555543 334
Q ss_pred CCeeE------------------ecccceEEEEEEc
Q 002941 775 RTVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 775 p~v~~------------------vrg~Gl~~~iel~ 792 (863)
|.|.. .+|.|.|+.|++.
T Consensus 278 p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 278 PAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 43321 2466889999996
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.1e-09 Score=119.12 Aligned_cols=242 Identities=12% Similarity=0.080 Sum_probs=141.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++....|+++|+++.+. +.+++++||++|+..++...+. .| ..||+....|.|
T Consensus 79 R~~~Pt~~~Le~~lA~leg~---~~~iv~~sG~~Ai~~~l~al~~---------~G------------d~Vv~~~p~Y~~ 134 (427)
T PRK07049 79 RFNHPNSEIVEDRLAVYEGA---ESAALFSSGMSAIATTLLAFVR---------PG------------DVILHSQPLYGG 134 (427)
T ss_pred CCCCcCHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHHhC---------CC------------CEEEEcCCCccc
Confidence 35567788999999998873 5788899999999888865521 12 468888888877
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... . .|+..+.+++. .|
T Consensus 135 ~~~~~~~~l~--------------~-------------~Gi~~v~~~~~-----------------------~d------ 158 (427)
T PRK07049 135 TETLLAKTFR--------------N-------------FGVGAVGFADG-----------------------LS------ 158 (427)
T ss_pred HHHHHHHHHH--------------h-------------cCcEEEEEeCC-----------------------CC------
Confidence 5332111000 0 00001111110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH------cCCeEEEecccccccccCCc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~------~gilLI~DEV~TGfGRtG~~ 672 (863)
.+.+++.+++.+ ...++.+|++|.. ++..|.++. ++++.+++++ +++++|+||++.++.... .
T Consensus 159 --~~~l~~~l~~~~---~~~~tklv~lesP-~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~-p 227 (427)
T PRK07049 159 --EAAIGAAAEAAA---AKGRVSLILIETP-ANPTNSLVD----VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK-P 227 (427)
T ss_pred --HHHHHHHHHhhc---cCCCceEEEEECC-CCCCCcccC----HHHHHHHHHHhhhcccCCCEEEEECCccccccCC-c
Confidence 123344443211 1235667888875 889987764 4455555554 899999999975441111 1
Q ss_pred chhhhcCCCCcEE--EeccccCC--CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 673 TTADLLGCVPDIA--CYGKLLTG--GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 673 ~a~e~~gv~PDiv--t~sKgLgg--G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
. .+ ..|++ +++|.++| | +.+|++++++++++.+... ........+|..+.+++..|+.+.. .
T Consensus 228 --l-~~--g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~~~------~~~~g~~ls~~~a~l~~r~L~tl~~--R 293 (427)
T PRK07049 228 --L-EH--GADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVRAL------RSAIGTQLDPHSCWMLGRSLETLVL--R 293 (427)
T ss_pred --c-cc--CCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHcCCChHHH--H
Confidence 1 12 35776 67999984 6 7899999999988877631 1112334677777777766654321 1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--------------------cccceEEEEEEcc
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRV--------------------VALGTLCAIELQA 793 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v--------------------rg~Gl~~~iel~~ 793 (863)
+++..++...+. +.++++|.|..| .|.|.|+.|++..
T Consensus 294 ~~~~~~~a~~la--------~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~ 350 (427)
T PRK07049 294 MERANRNARAVA--------EFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG 350 (427)
T ss_pred HHHHHHHHHHHH--------HHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC
Confidence 223333333333 344555544333 2568899999963
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-08 Score=111.39 Aligned_cols=293 Identities=10% Similarity=0.031 Sum_probs=157.8
Q ss_pred CcHHHHHHHHHHHHhcccccCCC-C-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARFGHVMFPE-N-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~-~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
-++.|.+|+.+.+.......... . ..+...++.++|+++++.+ .+.++|++++++|++.+++... .. +
T Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l~-~~----~ 83 (353)
T TIGR03235 10 IDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGLA-RA----G 83 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHH-Hh----c
Confidence 46899999988875422111000 0 1134567888999988753 3579999999999999987652 11 1
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
...| +..||+ ....|.+.......... . +. .+..++.+...
T Consensus 84 ~~~g-----------~~~vi~-~~~~~~s~~~~~~~~~~---~-----------G~-----------~v~~v~~~~~~-- 124 (353)
T TIGR03235 84 EQKG-----------KKHIIT-SAIEHPAVLEPIRALER---N-----------GF-----------TVTYLPVDESG-- 124 (353)
T ss_pred ccCC-----------CCeeeE-cccccHHHHHHHHHHHh---c-----------CC-----------EEEEEccCCCC--
Confidence 0011 133444 44445543322211100 0 00 01111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
..| .+.+++.+. ++..+|++..+ ++..|.+.+ +++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~l~--------~~~~lv~~~~~-~n~tG~~~~----~~~I~~l~ 164 (353)
T TIGR03235 125 -------------------RID--------VDELADAIR--------PDTLLVSIMHV-NNETGSIQP----IREIAEVL 164 (353)
T ss_pred -------------------cCC--------HHHHHHhCC--------CCCEEEEEEcc-cCCceeccC----HHHHHHHH
Confidence 011 234554442 23466777775 888998877 89999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecc-----
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG----- 723 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~----- 723 (863)
++||+++|+|++| ++|..- +-.+. ...|+++++ |.+ |-..+|+++++++..+.... .+...+
T Consensus 165 ~~~~~~~ivD~a~-~~g~~~--~~~~~--~~~D~~~~s~~K~~--gp~g~g~l~~~~~~~~~~~~----~~~~~~~~~~~ 233 (353)
T TIGR03235 165 EAHEAFFHVDAAQ-VVGKIT--VDLSA--DRIDLISCSGHKIY--GPKGIGALVIRKRGKPKAPL----KPIMFGGGQER 233 (353)
T ss_pred HHcCCEEEEEchh-hcCCcc--ccccc--cCCCEEEeehhhcC--CCCceEEEEEccCccccccc----CceeeCCCCcC
Confidence 9999999999999 455431 11222 247999887 964 31236888888875332110 001110
Q ss_pred --cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe----cccceEEEEEEccCCcC
Q 002941 724 --HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV----VALGTLCAIELQAAGCN 797 (863)
Q Consensus 724 --~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v----rg~Gl~~~iel~~~~~~ 797 (863)
...+.++..+++..++|+++.+ + .++.+++.+.+.+.+.+.+ .+ +.+.-+ .....+..+.+...
T Consensus 234 ~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~l----~~-~g~~~~~~~~~~~~~i~~~~~~~~--- 303 (353)
T TIGR03235 234 GLRPGTLPVHLIVGMGEAAEIARR-N-AQAWEVKLRAMRNQLRDAL----QT-LGVKLNGDPAETIPHILNFSIDGV--- 303 (353)
T ss_pred ccccCCCChHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHh----cc-CCeEEeCCcccccCCEEEEEeCCc---
Confidence 1234566777778888887643 1 3344555555555544333 22 222111 11223444544321
Q ss_pred CCCchHHHHHHHHHHHHCCcEEEec
Q 002941 798 AGYGSLYAASLLKKLREDGVYMRPL 822 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~~~p~ 822 (863)
....+.+.|.+ ||.++++
T Consensus 304 ------~~~~v~~~L~~-~i~v~~g 321 (353)
T TIGR03235 304 ------NSEALIVNLRA-DAAVSTG 321 (353)
T ss_pred ------CHHHHHHHHhC-CeEEEch
Confidence 14567777754 8888764
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-08 Score=110.52 Aligned_cols=309 Identities=15% Similarity=0.100 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
++-.+++.+.+..... ...+...+|.++|+++++. +.+++++||++|+..|++.. . . + .|
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~lal~al-~-~----~--~G---- 73 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTGN---QHAIAVSSATAGMHITLMAL-G-I----G--PG---- 73 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C-C----C--CC----
Confidence 4456777777664322 2346688999999999984 56888999999999998755 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (863)
.+||+...+|.+... ++...|.. +..++.. +.+
T Consensus 74 --------d~Viv~~~~~~~~~~-~~~~~G~~----------------------------~v~vd~~~~~~--------- 107 (379)
T PRK11658 74 --------DEVITPSLTWVSTLN-MIVLLGAT----------------------------PVMVDVDRDTL--------- 107 (379)
T ss_pred --------CEEEECCCcHHHHHH-HHHHcCCE----------------------------EEEEecCCCcC---------
Confidence 568888888776532 22111100 0011110 000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.-| .+.+++.+. .++.+|+ |+ + ..|...+ +++|.++|++||+++
T Consensus 108 ------------~~d--------~~~l~~~i~--------~~tkav~--~~-~-~~G~~~d----~~~i~~~a~~~gi~v 151 (379)
T PRK11658 108 ------------MVT--------PEAIEAAIT--------PRTKAII--PV-H-YAGAPAD----LDAIRAIGERYGIPV 151 (379)
T ss_pred ------------CcC--------HHHHHHhcc--------cCCeEEE--Ee-C-CCCCcCC----HHHHHHHHHHcCCeE
Confidence 001 134555442 2344554 43 2 3455443 789999999999999
Q ss_pred EEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeecc-HHHHHhhhc---CCcc-c-----------
Q 002941 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL-K----------- 718 (863)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~-~~i~~~l~~---~~~~-~----------- 718 (863)
|.|++|+ |.-..|... ..+|. ++..|+ |.|++| ..|+++++ +++++.+.. .+.. .
T Consensus 152 i~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 225 (379)
T PRK11658 152 IEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAP 225 (379)
T ss_pred EEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCC
Confidence 9999995 322223211 12343 566664 788765 46667764 777765532 1100 0
Q ss_pred ---eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee--Eec--ccc--eEEEE
Q 002941 719 ---ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ--RVV--ALG--TLCAI 789 (863)
Q Consensus 719 ---~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~--~vr--g~G--l~~~i 789 (863)
.+..|+.+..+.+.+|.+++-|+.+++ ..++-+++.+.+. +.+++.+.+. ... +.. .++.+
T Consensus 226 ~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~------~~~~r~~~a~~~~----~~L~~~~~~~~~~~~~~~~~~~~~~~~ 295 (379)
T PRK11658 226 QAEVLTPGYKYNLADINAAIALVQLAKLEA------LNARRREIAARYL----QALADLPFQPLSLPAWPHQHAWHLFII 295 (379)
T ss_pred cceeeccccccCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHhcCCCCccCcCCCCCCceeEEEEEE
Confidence 011233444556666767666665432 2222233333222 2333333210 101 111 23334
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----------------c----------CCEEEEecCCCCcHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------------L----------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----------------~----------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.... . .....++.+.|.++||-++. . ...+.+-.....|+|+++.++
T Consensus 296 ~~~~~~--~---~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~ 370 (379)
T PRK11658 296 RVDEER--C---GISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVI 370 (379)
T ss_pred EECCcc--c---cCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHH
Confidence 442210 0 01245788889999987651 0 033333223347999999999
Q ss_pred HHHHHHH
Q 002941 844 LKLYQRL 850 (863)
Q Consensus 844 ~~L~~~l 850 (863)
++|++++
T Consensus 371 ~~i~~~~ 377 (379)
T PRK11658 371 TALQQIA 377 (379)
T ss_pred HHHHHHH
Confidence 9998865
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-08 Score=112.67 Aligned_cols=314 Identities=13% Similarity=0.082 Sum_probs=171.9
Q ss_pred HHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcc
Q 002941 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (863)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~ 501 (863)
.+++.+++...... ..+...+|.++|+++++ .+.+++++||++|+..|++.+.+.+....+...
T Consensus 47 ~~a~~~~~~~~~~~-----~G~~~~~fe~~lA~~~g---~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~p-------- 110 (438)
T PRK15407 47 LQNLVDASLDFWLT-----TGRFNDAFEKKLAEFLG---VRYALLVNSGSSANLLAFSALTSPKLGDRALKP-------- 110 (438)
T ss_pred HHHHHHHHHhCccc-----CChhHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHhhccccccCCCC--------
Confidence 35555555543221 13457789999999988 357999999999999999876321111111111
Q ss_pred ccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC-cchhhhhhcccccccc
Q 002941 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITF 580 (863)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~ 580 (863)
...||+...+|.+........+..+ .+ +++ |..+
T Consensus 111 ----Gd~VIv~~~t~~a~~~~v~~~G~~p---------------v~--------------vdvd~~~~------------ 145 (438)
T PRK15407 111 ----GDEVITVAAGFPTTVNPIIQNGLVP---------------VF--------------VDVELPTY------------ 145 (438)
T ss_pred ----CCEEEECCCCcHHHHHHHHHcCCEE---------------EE--------------EecCCCcC------------
Confidence 2578888888866533322211100 00 000 0000
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
. -| .+.+++.+. .++.+|++.++ .| . +..+++|+++|++||++||.|
T Consensus 146 -------~--id--------~~~le~~i~--------~~tkaVi~~~~-~G---~----p~dl~~I~~la~~~gi~vIeD 192 (438)
T PRK15407 146 -------N--ID--------ASLLEAAVS--------PKTKAIMIAHT-LG---N----PFDLAAVKAFCDKHNLWLIED 192 (438)
T ss_pred -------C--cC--------HHHHHHHcC--------cCCeEEEEeCC-CC---C----hhhHHHHHHHHHHCCCEEEEE
Confidence 0 01 134444442 24677888775 43 2 235899999999999999999
Q ss_pred cccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhh---cCCcc---------------
Q 002941 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---GDSKL--------------- 717 (863)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~---~~~~~--------------- 717 (863)
++|+ +|-. +.-...|-.-|+.+|| |.++.| ..|+++++ +++.+.+. ..+..
T Consensus 193 aa~a-~G~~---~~g~~~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 266 (438)
T PRK15407 193 NCDA-LGST---YDGRMTGTFGDIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRF 266 (438)
T ss_pred Cccc-hhhh---cCCeeeeccCceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCccccccccccccccccc
Confidence 9994 5432 1111233334888875 667654 24677765 44544322 11100
Q ss_pred ---------------ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-e-eE-
Q 002941 718 ---------------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-V-QR- 779 (863)
Q Consensus 718 ---------------~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v-~~- 779 (863)
.....|+.|..+.+.+|.+++-|+.+++ ..++-+++.+++.+. ++..+. + ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~--~~~~R~~~a~~y~~~--------L~~~~~~~~~~~ 336 (438)
T PRK15407 267 GWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPG--FIEARKANFAYLKEG--------LASLEDFLILPE 336 (438)
T ss_pred ccccccccccccccccccccccccCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------hccCCCccccCc
Confidence 0001345566788999999999987743 233334444444432 223331 1 10
Q ss_pred -eccc-c--eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------------------------CCEE
Q 002941 780 -VVAL-G--TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------------------------GNVI 826 (863)
Q Consensus 780 -vrg~-G--l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------------------------g~~l 826 (863)
..+. - .++.+.+.... . ....++.+.|.++||-+++. ...+
T Consensus 337 ~~~~~~~~~~~~~i~~~~~~---~---~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l 410 (438)
T PRK15407 337 ATPNSDPSWFGFPITVKEDA---G---FTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTF 410 (438)
T ss_pred CCCCCeeEEEEEEEEECCcC---C---CCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeE
Confidence 1111 1 23344443211 0 02467888999999855310 0223
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+-.....|++|++.++++|.+++.
T Consensus 411 ~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 411 WIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHh
Confidence 3322234689999999999998774
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-07 Score=115.65 Aligned_cols=318 Identities=12% Similarity=0.043 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEE-EeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRAY-FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~-f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...+|.+.|++++| ++.+. +-+||+.|.-+++... |.|+..+|++ +| + ++....+-||...
T Consensus 543 q~i~elq~~l~eLtG---md~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge~-~r-----------~-~vLIp~saHgtNp 605 (954)
T PRK12566 543 AMIDELEAWLCAITG---FDAICMQPNSGAQGEYAGLLAI-RRYHRSRGQS-QR-----------D-ICLIPSSAHGTNP 605 (954)
T ss_pred HHHHHHHHHHHHHHC---CCeEeecCCchHHHHHHHHHHH-HHHHHhcCCC-CC-----------C-EEEecccccccCH
Confidence 456789999999998 45554 4558888887888766 7899888873 43 4 4555557787765
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.+....| +..+.+|... +..-| .
T Consensus 606 asa~~~G------------------------------ieVv~Vp~D~-------------------~G~iD--------l 628 (954)
T PRK12566 606 ASAQMAG------------------------------MRVVIVECDP-------------------DGNVD--------L 628 (954)
T ss_pred HHHHHCC------------------------------CEEEEeccCC-------------------CCCcC--------H
Confidence 4422211 1111122100 00011 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
++|++.+++ ..+++++|++.-. . .+|++. .-+++|.++|+++|+++++|=++. .+-.+. -.-.. +-
T Consensus 629 e~L~a~I~~-----~~~~laaVmiT~P-n-t~Gv~e---~~V~eI~~iah~~Galv~vDgA~~-~a~~~l-~~Pg~--~G 694 (954)
T PRK12566 629 DDLKAKAAA-----AGDRLSCLMITYP-S-THGVYE---EGIREICEVVHQHGGQVYMDGANL-NAQVGL-ARPAD--IG 694 (954)
T ss_pred HHHHHHhhc-----cCCCEEEEEEEec-C-cCceec---chHHHHHHHHHHcCCEEEEEeeCh-hhccCC-CChhh--cC
Confidence 456666642 3457777766532 2 344332 238999999999999999998884 211110 00112 34
Q ss_pred CcEEEec--cccC----CCCCCceeeeccHHHHHhhhcCC-------ccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 682 PDIACYG--KLLT----GGVIPLAATLATNAVFDSFVGDS-------KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 682 PDivt~s--KgLg----gG~~Pigav~~~~~i~~~l~~~~-------~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
.|+++++ |.++ +|..=+|.+.+++.+...+.... +.+.-.......++.+-+.++..-+..+= .+
T Consensus 695 ADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG-~e- 772 (954)
T PRK12566 695 ADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMG-PQ- 772 (954)
T ss_pred CCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHC-HH-
Confidence 6999875 8664 45233666677887776665321 00111122233344444444455455442 22
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ce---EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GT---LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---- 820 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl---~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~---- 820 (863)
..++......+..++.++|.+ ..+.. . .+. |. -+.+.+..-+ .. .......+.++|++.|+...
T Consensus 773 Lk~aa~~ailnAnYla~rL~~---~~~v~-~-~~~~~~~~hEfii~~~~l~--~~-~g~~~~dvakRL~d~Gihapt~~f 844 (954)
T PRK12566 773 LADASEVAILSANYLANQLGG---AFPVL-Y-RGRNERVAHECILDLRPLK--AQ-TGISEEDVAKRLMDYGFHAPTMSF 844 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhHh---hCCCC-c-CCCCCCeeeEEEEEccccc--cc-cCCCHHHHHHHHHHCCcEEeEEee
Confidence 333344333344444434332 12221 1 221 11 1222222111 00 00124678999999888764
Q ss_pred ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858 (863)
Q Consensus 821 p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~~ 858 (863)
|..+.+++.|.-..+++|||+++++|....++++++.+
T Consensus 845 Pv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~v~~ 882 (954)
T PRK12566 845 PVPGTLMVEPTESESKAELDRFVEAMLSIRAEIGKVQE 882 (954)
T ss_pred ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999888754
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.4e-09 Score=117.06 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=148.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+ .+.+++++||++|+..++...++ .| ..||+.+..||+.
T Consensus 47 ~gnPt~~~lE~~lA~l~g---~~~~~~~~sG~~Ai~~al~all~---------~G------------D~Vl~~~~~y~~t 102 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEG---GAGCYLYPSGLAAVTNSILAFVK---------AG------------DHVLMVDSAYEPT 102 (377)
T ss_pred CCCccHHHHHHHHHHHhC---CCcEEEECcHHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHHH
Confidence 346778899999999887 36789999999999999875421 12 5688888889875
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
....-... ..+ +. . +..+ +. .+
T Consensus 103 ~~~~~~~~--~~~------------gi--~---------v~~~-------------------------d~-~~------- 124 (377)
T TIGR01324 103 RYFCDIVL--KRM------------GV--D---------ITYY-------------------------DP-LI------- 124 (377)
T ss_pred HHHHHHHH--Hhc------------Cc--E---------EEEE-------------------------CC-CC-------
Confidence 32110000 000 00 0 0000 00 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .+..+|++|.. .+..|...+ +++|.++|++||+++|+||+|. +|-.+... .
T Consensus 125 -~e~l~~~i~--------~~tklV~lesp-~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~pl-----~ 184 (377)
T TIGR01324 125 -GEDIATLIQ--------PNTKVLFLEAP-SSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFKPL-----E 184 (377)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccCcc-----c
Confidence 023444442 24568888976 677775544 9999999999999999999994 44443322 2
Q ss_pred CCCcEEEe--ccccCCCC-CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIACY--GKLLTGGV-IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt~--sKgLggG~-~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
...|+++. .|.++|.- .-.|+++++++.++.+... ...+....+|..+...+..|+.+. -..++..+++
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~------~~~~G~~l~p~~a~~~~rgl~tl~--~R~~~~~~~a 256 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREH------SYLMGQMVDADDAYTTLRGLRTLG--VRLKQHQESS 256 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHH------HHHhCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHH
Confidence 34688865 79997520 2356778888877765421 112233456766666666665442 1134555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHH
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE 814 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e 814 (863)
.++.++| +++|.|..| .|.|.|+.+++.... ...+.+|.+.|.-
T Consensus 257 ~~la~~L--------~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~------~~~~~~~~~~l~~ 318 (377)
T TIGR01324 257 LAIAKWL--------SEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT------QKQVHAFLDHLQL 318 (377)
T ss_pred HHHHHHH--------HhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC------HHHHHHHHHhCCc
Confidence 5555433 344433222 367889999996321 1234556665553
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=115.17 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=139.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++++++.+. +.++.++||+.|+..++...++ .| ..||+...+|++.
T Consensus 50 ~~np~~~~lE~~lA~l~g~---~~~l~~~sG~~Ai~~~l~~ll~---------~G------------D~Vlv~~~~y~~~ 105 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG---VDALAFNSGMAAISTLFFSLLK---------AG------------DRVVLPMEAYGTT 105 (385)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchhH
Confidence 4567788999999999873 5678889999999998875521 12 4688777777654
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
. ..+... ..+ +. . +..+ . .+
T Consensus 106 ~-~~~~~~--~~~------------g~----~-------v~~~-~--------------------------~d------- 125 (385)
T PRK08574 106 L-RLLKSL--EKF------------GV----K-------VVLA-Y--------------------------PS------- 125 (385)
T ss_pred H-HHHHHh--hcc------------Cc----E-------EEEE-C--------------------------CC-------
Confidence 2 211110 000 00 0 0000 0 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +.++.+|++|.. .+..|.+++ +++|.++|++||+++|+||+++ .|-..... .+|
T Consensus 126 -~~~l~~~i~-------~~~tklV~ie~p-~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~~~~~~l---~~G 188 (385)
T PRK08574 126 -TEDIIEAIK-------EGRTKLVFIETM-TNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TPLLYRPL---RHG 188 (385)
T ss_pred -HHHHHHhcC-------ccCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-ccccCChh---hhC
Confidence 123444442 224678888886 888887776 8899999999999999999983 32222211 133
Q ss_pred CCCcEEE--eccccCC-CCCCc-eeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 680 CVPDIAC--YGKLLTG-GVIPL-AATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 680 v~PDivt--~sKgLgg-G~~Pi-gav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
.|+++ ++|.++| | -.+ |+++ .++++.+.+.... ...+...+|..++.++..|+.+.. ..++-.+
T Consensus 189 --aDivv~S~sK~l~g~~-d~~gG~vi~~~~~~~~~~~~~~------~~~g~~~~p~~a~l~l~~l~tL~~--R~~~~~~ 257 (385)
T PRK08574 189 --ADFVVHSLTKYIAGHN-DVVGGVAVAWSGEFLEELWEWR------RRLGTIMQPFEAYLVLRGLKTLEV--RFERQCR 257 (385)
T ss_pred --CcEEEeeCceeecCCC-CceeEEEEECcHHHHHHHHHHH------HhcCCCCCHHHHHHHHcccCcHHH--HHHHHHH
Confidence 58774 5799975 3 233 4344 4677777655311 112344568888888777776532 2333344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe--------------------cccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV--------------------VALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v--------------------rg~Gl~~~iel~ 792 (863)
++.++.+ .++++|.|..| .|.|.|+.+++.
T Consensus 258 na~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~ 307 (385)
T PRK08574 258 NAMAIAE--------FLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVK 307 (385)
T ss_pred HHHHHHH--------HHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeC
Confidence 4444443 33455544322 257889999996
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-08 Score=114.00 Aligned_cols=235 Identities=13% Similarity=0.061 Sum_probs=136.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +..+.++||++|+..++.+. . .| .+||+....|++
T Consensus 48 r~~~pt~~~le~~la~l~g~---~~~~~~~sG~~ai~~~~~ll-~---------~G------------d~Vl~~~~~y~~ 102 (366)
T PRK08247 48 RTGNPTRGVLEQAIADLEGG---DQGFACSSGMAAIQLVMSLF-R---------SG------------DELIVSSDLYGG 102 (366)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHh-C---------CC------------CEEEEecCCcCc
Confidence 45677889999999999874 45788999999998765322 1 12 578988888887
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
......... .. .+. .+..++. .|
T Consensus 103 t~~~~~~~~--~~------------~G~-----------~v~~vd~--------------------------~d------ 125 (366)
T PRK08247 103 TYRLFEEHW--KK------------WNV-----------RFVYVNT--------------------------AS------ 125 (366)
T ss_pred HHHHHHHHh--hc------------cCc-----------eEEEECC--------------------------CC------
Confidence 421111000 00 000 0000100 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. .+..| +...+++|.++|++||+++|+||++. .+-.+.. .
T Consensus 126 --~~~l~~~i~--------~~tklv~le~P-~NP~~----~~~dl~~I~~la~~~g~~lIvD~t~~-~~~~~~p-----~ 184 (366)
T PRK08247 126 --LKAIEQAIT--------PNTKAIFIETP-TNPLM----QETDIAAIAKIAKKHGLLLIVDNTFY-TPVLQRP-----L 184 (366)
T ss_pred --HHHHHHhcc--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCc-cccccCc-----h
Confidence 133444442 24567777764 55543 45569999999999999999999982 1111111 1
Q ss_pred CCCCcEE--EeccccCCC-CCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG-~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
....|++ .++|.++|. =.-.|+++++ +++++.+... ....+...+|..+..++..|+.+.. ..++..+
T Consensus 185 ~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~l~tl~~--r~~~~~~ 256 (366)
T PRK08247 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY------QNAAGAVLSPFDSWLLIRGMKTLAL--RMRQHEE 256 (366)
T ss_pred hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH------HHhcCCCCChHHHHHHHhccCcHHH--HHHHHHH
Confidence 1235776 568999751 1345667775 6776665421 1122344577777776666654321 1222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel~ 792 (863)
+.+. +.+.++++|.|.. ..|.|.|+.+++.
T Consensus 257 ~a~~--------l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 257 NAKA--------IAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHHH--------HHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 2222 3445667787765 3557899999885
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=114.53 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=141.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..++...++ .| .+|++...+|+|
T Consensus 48 R~~~pt~~~L~~~lA~l~g~---~~~i~~~sg~~Ai~~~l~~l~~---------~G------------D~Vl~~~~~y~~ 103 (386)
T PRK08045 48 RRGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFLK---------PG------------DLLVAPHDCYGG 103 (386)
T ss_pred CCCCccHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHcC---------CC------------CEEEEcCCCcHH
Confidence 45677788999999998773 4699999999999988875421 12 568888888876
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......+... .+. . +..+ + ..|
T Consensus 104 ~~~~~~~~~~~--------------~gi--~---------v~~v--d------------------------~~d------ 126 (386)
T PRK08045 104 SYRLFDSLAKR--------------GCY--R---------VLFV--D------------------------QGD------ 126 (386)
T ss_pred HHHHHHHHHhh--------------CCe--E---------EEEe--C------------------------CCC------
Confidence 43211111000 000 0 0000 0 001
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .+..+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++... ... ..+
T Consensus 127 --~e~l~~~l~--------~~tklV~l~sP-~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~~-----~pl 185 (386)
T PRK08045 127 --EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-ALQ-----NPL 185 (386)
T ss_pred --HHHHHHhcc--------cCCeEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-ccC-----Cch
Confidence 123444442 23456777765 788887775 889999999999999999998532 111 112
Q ss_pred CCCCcEEE--eccccCC--CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 679 GCVPDIAC--YGKLLTG--GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 679 gv~PDivt--~sKgLgg--G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
....|+++ ++|.++| + ...|++++ ++++.+.+... ....+...+|+.+..++..|+-+.. ..++..
T Consensus 186 ~~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~------~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~ 256 (386)
T PRK08045 186 ALGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWW------ANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQ 256 (386)
T ss_pred hhCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhccHHH--HHHHHH
Confidence 23458774 6898874 3 34666666 57776655421 1122344678888777777765421 123444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
++...+.+ .+++||.|..| .|.|.|+.+++..
T Consensus 257 ~na~~la~--------~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 257 RNAQAIVK--------YLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred HHHHHHHH--------HHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 44444444 34556655444 3678899999963
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=116.61 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.+++++||++|+..+++...+ +| .+||+....|+|.
T Consensus 55 ~~~pt~~~Le~~lA~l~g~---~~~l~~ssG~~Ai~~al~al~~---------~G------------d~Vl~~~~~Y~~t 110 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGG---VGALAVASGMAAITYAIQTIAE---------AG------------DNIVSVAKLYGGT 110 (425)
T ss_pred CCCchHHHHHHHHHHHhCC---CceeEehhHHHHHHHHHHHHhC---------CC------------CEEEEeCCCcchH
Confidence 4567788999999999873 5678899999999999986631 12 4689888999874
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
. ..+... .+.+ + +....++ ..|
T Consensus 111 ~-~~~~~~-l~~~------------g-------------i~v~~~d------------------------~~d------- 132 (425)
T PRK06084 111 Y-NLLAHT-LPRI------------G-------------IETRFAA------------------------HDD------- 132 (425)
T ss_pred H-HHHHHh-cccc------------e-------------eEEEEEC------------------------CCC-------
Confidence 3 222110 0000 0 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++. .+... ..+.
T Consensus 133 -~e~le~ai~--------~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~-----~p~~ 192 (425)
T PRK06084 133 -IAALEALID--------ERTKAVFCESI-GNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC-----RPFE 192 (425)
T ss_pred -HHHHHHHhc--------cCCcEEEEeCC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Chhh
Confidence 234555553 24568888886 889997776 8999999999999999999994 32222 2223
Q ss_pred CCCcEEE--eccccCCCCCCceeeecc
Q 002941 680 CVPDIAC--YGKLLTGGVIPLAATLAT 704 (863)
Q Consensus 680 v~PDivt--~sKgLggG~~Pigav~~~ 704 (863)
..+|+++ ++|.++|.-..+|++++.
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEEe
Confidence 3578874 579998633667776663
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-08 Score=114.10 Aligned_cols=147 Identities=15% Similarity=0.107 Sum_probs=87.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~ 696 (863)
++.+|++|.. .+..|.+.+ +++|.++|++||+++|+||++. .+...... .+ .+|+++ ++|.++|.-.
T Consensus 146 ~tklV~ie~p-~NptG~v~d----l~~I~~la~~~gi~livD~t~~-~~~~~~pl---~~--g~Divv~S~sK~~~g~g~ 214 (390)
T PRK08133 146 NTKLFFLETP-SNPLTELAD----IAALAEIAHAAGALLVVDNCFC-TPALQQPL---KL--GADVVIHSATKYLDGQGR 214 (390)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hh--CCcEEEeecceeecCCcc
Confidence 4567888875 788887765 8999999999999999999984 22221111 12 358875 5799976325
Q ss_pred Cc-eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 697 PL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 697 Pi-gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.+ |++++++++++.+... ........+|..+..++..++.+.. ..++..++...+.+ .++++|
T Consensus 215 ~~GG~vv~~~~~~~~~~~~------~~~~g~~~~~~~a~~~l~gl~tl~~--R~~~~~~~a~~la~--------~L~~~p 278 (390)
T PRK08133 215 VLGGAVVGSKELMEEVFGF------LRTAGPTLSPFNAWVFLKGLETLSL--RMEAHSANALALAE--------WLEAHP 278 (390)
T ss_pred eEeEEEEcCHHHHHHHHHH------HHHhCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHH--------HHHhCC
Confidence 66 5666777776654421 1112233466666665555543321 12233333333333 344454
Q ss_pred CeeE------------------ecccceEEEEEEc
Q 002941 776 TVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 776 ~v~~------------------vrg~Gl~~~iel~ 792 (863)
.|.. ..|.|.|+.+++.
T Consensus 279 ~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 279 GVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 4432 2467889999996
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-08 Score=114.50 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=95.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg-G~ 695 (863)
++.+|++|.. .+..|.+++ +++|.++|++||+++|+|+++.. +..+.. .+...|+++ ++|.++| |-
T Consensus 150 ~tklV~le~p-~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g~Di~v~S~tK~l~g~gd 218 (403)
T PRK07503 150 KTRMVYFETP-ANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQRP-----LELGADLVVHSATKYLGGHGD 218 (403)
T ss_pred cCcEEEEeCC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCCc-----hhhCCCEEEccccccccCCCc
Confidence 4567888865 788887766 89999999999999999999952 223322 233568775 5799986 32
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.-.|+++.++++++.+.... ......+..+|+.++.++..|+.+.. ..++..++...+.++ ++++|
T Consensus 219 ~~gG~v~~~~~l~~~l~~~~----~~~~~g~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~~a~~--------L~~~p 284 (403)
T PRK07503 219 ITAGLVVGGKALADRIRLEG----LKDMTGAVMSPFDAFLLMRGLKTLAL--RMDRHCASAQAVAEW--------LARHP 284 (403)
T ss_pred eeEEEEEcCHHHHHHHHhhh----HHhCcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHH--------HHhCC
Confidence 45677888888888765210 01112356688888888777775531 123333444444443 33444
Q ss_pred CeeEe------------------cccceEEEEEEcc
Q 002941 776 TVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 776 ~v~~v------------------rg~Gl~~~iel~~ 793 (863)
.|..| +|.|.++.+++..
T Consensus 285 ~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 320 (403)
T PRK07503 285 AVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG 320 (403)
T ss_pred CccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC
Confidence 33322 3568899999863
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.4e-08 Score=110.75 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=117.3
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCcEE---Eecccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDiv---t~sKgL 691 (863)
.++.++..| ++..|.+. +.+.+++|.++|++||+++|.||++.+|...|. ......+ ....+++ +|||.+
T Consensus 195 ~~~i~~~~P--~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~ 271 (423)
T PLN02397 195 SFVLLHACA--HNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNM 271 (423)
T ss_pred CEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccC
Confidence 444455556 88889655 788899999999999999999999998843221 1111111 1112344 679999
Q ss_pred C-CCCCCceeee---ccHHHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChh----h---HHhHHHHHHHH
Q 002941 692 T-GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQ----T---NHNIIPERRIL 759 (863)
Q Consensus 692 g-gG~~Pigav~---~~~~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~----l---~~~l~~~~~~l 759 (863)
+ .| +.+|+++ .++++++.+...- .. ....++ +.+.++++++.+.|+ +++ + .+++.+..+..
T Consensus 272 ~~~G-~RvG~~v~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~q~~~~~~L~---~~~~~~~~~~~~~~~~~~~~~r 344 (423)
T PLN02397 272 GLYG-ERVGALSVVCKSADVAVRVKSQL--KL-IARPMYSNPPIHGASIVATILG---DPELFSEWTKELKGMADRIISM 344 (423)
T ss_pred CCcc-ccceEEEEEeCCHHHHHHHHHHH--HH-HHhcccCCCcHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 8 68 8999984 3566554332100 00 011222 334556655555553 432 2 23333444444
Q ss_pred HHHHHHHHHHHHhcCC---CeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCC
Q 002941 760 RELWDLELIQQISSHR---TVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p---~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~ 834 (863)
++.+.+. +.++. .+..+...|.|+. +.+. ..+++.|+ +.||++.+.| |+.. ...
T Consensus 345 r~~l~~~----L~~~~~~~~~~~~~p~gg~fl~~~l~-------------~~~~~~Ll~~~~V~v~~~~---Ri~~-~~~ 403 (423)
T PLN02397 345 RQKLYDA----LEARGSPGDWSHITKQIGMFSFTGLN-------------KEQVDRMTKEYHIYMTRDG---RISM-AGL 403 (423)
T ss_pred HHHHHHH----HHhcCCCCCCCcccCCceEEEecCCC-------------HHHHHHHHHhCCEEECCCC---eEEE-eeC
Confidence 4444333 33332 1223345555544 4331 23666665 6699997654 5432 248
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
+++.+++++++|.++++
T Consensus 404 ~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 404 SSKNVPYLADAIHAVVT 420 (423)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999874
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=116.63 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=108.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+ .+.+++++||++|+..+++..++ .| .+||+....|+|
T Consensus 53 r~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~~---------~G------------d~Vl~~~~~y~~ 108 (418)
T TIGR01326 53 RLMNPTTDVLEQRIAALEG---GVAALAVASGQAAITYAILNLAQ---------AG------------DNIVSSSYLYGG 108 (418)
T ss_pred CCCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHhC---------CC------------CEEEEECCCcHH
Confidence 3567788999999999987 36789999999999999986631 12 568888888877
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.-.- ... |+....+|. .|
T Consensus 109 t~-~~~~~~~-------------~~~-------------G~~v~~v~~------------------------~d------ 131 (418)
T TIGR01326 109 TY-NLFKHTL-------------KRL-------------GIEVRFVDP------------------------DD------ 131 (418)
T ss_pred HH-HHHHHHH-------------HHc-------------CcEEEEECC------------------------CC------
Confidence 42 1111000 000 000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++. .+.. ...+
T Consensus 132 --~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~~-----~~~l 190 (418)
T TIGR01326 132 --PEEFEKAID--------ENTKAVFAETI-GNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPYL-----CRPI 190 (418)
T ss_pred --HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhhc-----CCch
Confidence 133444442 24678888986 888887665 8999999999999999999984 3211 2222
Q ss_pred CCCCcEE--EeccccCC-CCCCceeeeccH
Q 002941 679 GCVPDIA--CYGKLLTG-GVIPLAATLATN 705 (863)
Q Consensus 679 gv~PDiv--t~sKgLgg-G~~Pigav~~~~ 705 (863)
...+|++ +++|.++| | .++|++++++
T Consensus 191 ~~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 191 DHGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred hcCCeEEEECccccccCCc-cceEEEEEec
Confidence 3347987 56899987 6 8999988854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-08 Score=113.74 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.+++++||+.|++.+++..++ +| .+||+....|+|.
T Consensus 60 ~~~p~~~~le~~lA~l~g~---~~al~~~SG~~Ai~~al~all~---------pG------------d~VIv~~~~y~~t 115 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGG---TAALAVASGHAAQFLVFHTLLQ---------PG------------DEFIAARKLYGGS 115 (427)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHhC---------CC------------CEEEEecCcchhH
Confidence 3466788999999999874 5688999999999999986631 22 5788888888775
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
.......- ...+ +....++ ..|
T Consensus 116 ~~~~~~~~--------------~~~G-------------~~v~~vd------------------------~~d------- 137 (427)
T PRK05994 116 INQFGHAF--------------KSFG-------------WQVRWAD------------------------ADD------- 137 (427)
T ss_pred HHHHHHHH--------------HhcC-------------cEEEEEC------------------------CCC-------
Confidence 21100000 0000 0000000 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|++||+++|+||+++ . + .....+.
T Consensus 138 -~~~l~~ai~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~a~a-~---~--~~~~pl~ 197 (427)
T PRK05994 138 -PASFERAIT--------PRTKAIFIESI-ANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLA-S---P--YLIRPIE 197 (427)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCcc-c---c--ccCCccc
Confidence 133444442 24678888886 888898776 8999999999999999999995 2 1 1223344
Q ss_pred CCCcEEE--eccccCCCCCCceeeec
Q 002941 680 CVPDIAC--YGKLLTGGVIPLAATLA 703 (863)
Q Consensus 680 v~PDivt--~sKgLggG~~Pigav~~ 703 (863)
..+|+++ ++|.++|---++|++++
T Consensus 198 ~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred cCCcEEEEcCccccCCCCCcEEEEEE
Confidence 5689886 57999862146676555
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=114.69 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=93.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg-G~ 695 (863)
+..+|++|-. .+..|.+.+ +++|.++|+++|+++|+||++.. +...... ....|++++ +|.++| |
T Consensus 150 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~-~~~~~~~-----~~gaDivv~S~sK~l~g~g- 217 (398)
T PRK07504 150 NTKVFFLESP-TNPTLEVID----IAAVAKIANQAGAKLVVDNVFAT-PLFQKPL-----ELGAHIVVYSATKHIDGQG- 217 (398)
T ss_pred CceEEEEECC-CCCCcEecC----HHHHHHHHHHcCCEEEEECCccc-cccCCch-----hhCCCEEEeeccccccCCc-
Confidence 4567777765 788887776 99999999999999999999852 2222211 223688755 799975 5
Q ss_pred CCce-eeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 696 IPLA-ATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 696 ~Pig-av~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
.++| +++++++.+. .+... ........+|..++.++..|+.+.. ..++..++..++.+.| ++
T Consensus 218 ~~~GG~vv~~~~~i~~~~~~~------~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L--------~~ 281 (398)
T PRK07504 218 RCLGGVVLSDKAWIEEHLQDY------FRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFL--------AG 281 (398)
T ss_pred cceEEEEEeCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHH--------Hc
Confidence 6775 5666766554 23210 1112235688888888888887632 2344445555555433 34
Q ss_pred CCCee------------------EecccceEEEEEEcc
Q 002941 774 HRTVQ------------------RVVALGTLCAIELQA 793 (863)
Q Consensus 774 ~p~v~------------------~vrg~Gl~~~iel~~ 793 (863)
+|.|. ..+|.|.|+.+++..
T Consensus 282 ~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 319 (398)
T PRK07504 282 HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG 319 (398)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC
Confidence 44332 124668999999963
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-08 Score=111.23 Aligned_cols=145 Identities=15% Similarity=0.074 Sum_probs=91.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEE--eccccCC--
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIAC--YGKLLTG-- 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt--~sKgLgg-- 693 (863)
++..|++|.. .+.+|.+.+ +++|.++|+++|+++|+||++. .+| . .-+...+|+++ ++|.++|
T Consensus 132 ~t~lV~le~p-~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~---~----~p~~~g~Divv~S~sK~l~G~~ 199 (366)
T PRK07582 132 GADLVLAETP-SNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLG---Q----RPLELGADLVVASDTKALTGHS 199 (366)
T ss_pred CceEEEEECC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCccc---c----CchhcCCcEEEecccccccCCC
Confidence 3456666664 677776554 8999999999999999999983 222 1 11123468874 5799975
Q ss_pred CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
| +.+|++++ ++++++.+... .....-..+|..+..++..|+.+. -..++..+++..+.++ ++
T Consensus 200 g-~~~G~v~~~~~~l~~~l~~~------~~~~g~~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~--------L~ 262 (366)
T PRK07582 200 D-LLLGYVAGRDPELMAAVERW------RLLAGAIPGPFEAWLAHRSLGTLG--LRFARQCANALAVAEL--------LA 262 (366)
T ss_pred C-eeEEEEEcCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHH--------HH
Confidence 4 56787886 47777766531 011122346777776666665432 1224555555555543 44
Q ss_pred cCCCeeEec------------------ccceEEEEEEc
Q 002941 773 SHRTVQRVV------------------ALGTLCAIELQ 792 (863)
Q Consensus 773 ~~p~v~~vr------------------g~Gl~~~iel~ 792 (863)
++|.|..|. |.|.++.+++.
T Consensus 263 ~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 263 GHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred hCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 556554443 57889999996
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-08 Score=111.73 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=92.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCC-C
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG-V 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG-~ 695 (863)
++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||++..+ .... .+....|++ +++|.++|. -
T Consensus 130 ~tklV~l~sp-~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~-----~l~~~~divv~S~sK~l~G~~~ 198 (376)
T PRK06460 130 RYDVVFVENI-TNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK-----PLELGADIVVHSASKFLAGHND 198 (376)
T ss_pred CceEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----hhhcCCCEEEeecceeccCCCC
Confidence 4567777876 889997776 678999999999999999998532 1111 111235776 578998741 0
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.-+|++++++++++.+... ...++.+.+|..+..++..++.++ ...+++.++..++.+.| +++|
T Consensus 199 ~~~G~~~~~~~l~~~l~~~------~~~~g~~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L--------~~~p 262 (376)
T PRK06460 199 VIAGLAAGYGKLLNVIDQM------RRTLGTSLDPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFL--------EGHP 262 (376)
T ss_pred ceEEEEecCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHH--------HcCC
Confidence 3477888999998877631 112233355655555555555553 22445555555555433 3334
Q ss_pred CeeE------------------ecccceEEEEEEcc
Q 002941 776 TVQR------------------VVALGTLCAIELQA 793 (863)
Q Consensus 776 ~v~~------------------vrg~Gl~~~iel~~ 793 (863)
.|.. ..|.|.|+.+++..
T Consensus 263 ~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 263 KVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred CccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 3321 14789999999964
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-08 Score=110.60 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=91.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC-CCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG-GVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg-G~~ 696 (863)
+.+|++|-. .+..|.+.. +++|.++|++||+++|+||++..-... ..+ ....|++++ +|.++| |-.
T Consensus 146 tklV~l~~P-~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~-~pl-----~~gaDivv~S~tK~l~g~~~~ 214 (405)
T PRK08776 146 PKLVLIETP-SNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ-KPL-----EFGADLVLHSTTKYINGHSDV 214 (405)
T ss_pred CeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc-----cccCCEEEecCceeecCCCCc
Confidence 455666654 688887654 899999999999999999998532111 111 123588765 598874 114
Q ss_pred Cceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 697 PLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 697 Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
-.|++++ ++++.+.+... .....+..+|+.+.+++..++.++. ..++..++...+.++ ++++|
T Consensus 215 ~~G~vv~~~~~l~~~l~~~------~~~~g~~~s~~~a~l~~~gl~tl~~--r~~~~~~na~~la~~--------L~~~p 278 (405)
T PRK08776 215 VGGAVVARDAELHQQLVWW------ANALGLTGSPFDAFLTLRGLRTLDA--RLRVHQENADAIAAL--------LDGHA 278 (405)
T ss_pred eEEEEEeCCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhCcHHH--HHHHHHHHHHHHHHH--------HHcCC
Confidence 4566665 57776665421 1112234689999888877776532 344555555555443 34455
Q ss_pred CeeE------------------ecccceEEEEEEcc
Q 002941 776 TVQR------------------VVALGTLCAIELQA 793 (863)
Q Consensus 776 ~v~~------------------vrg~Gl~~~iel~~ 793 (863)
.|.. ..|.|.|+.+++..
T Consensus 279 ~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 279 AVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred CeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 4432 24788999999963
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-07 Score=106.50 Aligned_cols=305 Identities=15% Similarity=0.135 Sum_probs=165.0
Q ss_pred HHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCc
Q 002941 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~ 500 (863)
-.+++.+.+..... ....+...+++++|++.++ .+++++++||++|+..+++.+. . + .|
T Consensus 13 ~~~~~~~~l~~~~~----~g~~~~~~~~e~~la~~~g---~~~~v~~~sgt~al~~~l~~~~--~----~--~G------ 71 (375)
T PRK11706 13 ELDYIQQAMSSGKL----CGDGGFTRRCQQWLEQRFG---SAKVLLTPSCTAALEMAALLLD--I----Q--PG------ 71 (375)
T ss_pred HHHHHHHHHHcCCc----cCCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHhC--C----C--CC------
Confidence 35666666654322 1224566888899999887 4689999999999998887551 0 0 12
Q ss_pred cccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccccc
Q 002941 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (863)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (863)
..||+...+|.+........+.... +++. -++.+
T Consensus 72 ------d~Viv~~~t~~~~~~~~~~~G~~~v---------------~~d~-------------d~~~~------------ 105 (375)
T PRK11706 72 ------DEVIMPSYTFVSTANAFVLRGAKIV---------------FVDI-------------RPDTM------------ 105 (375)
T ss_pred ------CEEEECCCCcHHHHHHHHHcCCEEE---------------EEec-------------CCCcC------------
Confidence 5688888777765332222111000 0000 00000
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
..| .+.+++.+. + ++.+|+ ++ + ..|.... +++|.++|++||+++|.|
T Consensus 106 ---------~~d--------~~~le~~i~-------~-~tk~i~--~~-~-~~G~~~~----~~~i~~la~~~~i~vIeD 152 (375)
T PRK11706 106 ---------NID--------ETLIEAAIT-------P-KTRAIV--PV-H-YAGVACE----MDTIMALAKKHNLFVVED 152 (375)
T ss_pred ---------CcC--------HHHHHHhcC-------C-CCeEEE--Ee-C-CCCCccC----HHHHHHHHHHcCCEEEEE
Confidence 001 234555442 1 234444 22 2 3454443 789999999999999999
Q ss_pred ccccccccc--CCcchhhhcCCCCcEEEec----cccCCCCCCceeeeccHHHHHhhh---cCCcc------------ce
Q 002941 661 EVFTGFWRL--GVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAVFDSFV---GDSKL------------KA 719 (863)
Q Consensus 661 EV~TGfGRt--G~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~~~i~~~l~---~~~~~------------~~ 719 (863)
++|+ +|.. |. ..|---|+.+|| |.++.| .-.+.+..++++++.+. ..+.. ..
T Consensus 153 ~a~a-~g~~~~~~-----~~g~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (375)
T PRK11706 153 AAQG-VMSTYKGR-----ALGTIGHIGCFSFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTW 225 (375)
T ss_pred Cccc-cccccCCe-----eeecCcCEEEEeCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCccee
Confidence 9994 5542 22 122234888888 999654 22334455677776433 11100 00
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC---Cee------EecccceEEEEE
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR---TVQ------RVVALGTLCAIE 790 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p---~v~------~vrg~Gl~~~ie 790 (863)
...+.++-.+.+.+|.+++-|+.+++ ..++-+++.++..+ .+++.+ .+. .......++.+.
T Consensus 226 ~~~g~~~~~~~~~aa~~~~ql~~l~~--~~~~R~~~~~~~~~--------~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T PRK11706 226 VDIGSSYLPSELQAAYLWAQLEAADR--INQRRLALWQRYYD--------ALAPLAEAGRIELPSIPDDCKHNAHMFYIK 295 (375)
T ss_pred eecccccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HhcCCCcCCeeecCCCCCCCceeeEEEEEE
Confidence 11244455567777888888876532 12222333333333 223332 111 011112244454
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------------C----------CEEEEecCCCCcHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------------G----------NVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------------g----------~~lr~~ppl~~t~eeid~~v 843 (863)
+.+.. ...++.+.|.++||.++.. + +.+.+-.....+++|++.++
T Consensus 296 ~~~~~--------~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~ 367 (375)
T PRK11706 296 LRDLE--------DRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVI 367 (375)
T ss_pred ECCcC--------CHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHH
Confidence 43221 2567889999999986410 0 22333222236899999999
Q ss_pred HHHHHHH
Q 002941 844 LKLYQRL 850 (863)
Q Consensus 844 ~~L~~~l 850 (863)
++|.+.+
T Consensus 368 ~~i~~~~ 374 (375)
T PRK11706 368 DTILEFF 374 (375)
T ss_pred HHHHHHh
Confidence 9988764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-07 Score=113.16 Aligned_cols=320 Identities=13% Similarity=0.018 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
+...++.++|+++++ .+.|.|.++.+..-|-|+-++++.|++.+|.. . +++|....+-||+-..
T Consensus 568 ~~~~~~r~~la~i~g---~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~-~------------r~~vli~~~aH~sn~a 631 (993)
T PLN02414 568 EMFEDLGDLLCEITG---FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDH-H------------RNVCIIPVSAHGTNPA 631 (993)
T ss_pred HHHHHHHHHHHHHhC---CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCC-C------------CCEEEeCCCcCccCHH
Confidence 445689999999998 57888777666444444444446676555541 1 3467777788998665
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
.....|- .+..++..... .-| .+
T Consensus 632 ~a~~~G~----------------------------~vv~v~~d~~G---------------------~vD--------le 654 (993)
T PLN02414 632 SAAMCGM----------------------------KIVVVGTDAKG---------------------NIN--------IE 654 (993)
T ss_pred HHHHCCC----------------------------EEEEeccCCCC---------------------CcC--------HH
Confidence 5443210 01111111000 011 34
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCC
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P 682 (863)
+|++.++. +.+++++|++-=. .+.||...+ +++|.++|+++|+++++|=++. .+-.|. ..-...-.
T Consensus 655 ~L~~~i~~-----~~~~ta~V~vt~p-Sn~gg~e~~----I~eI~~iah~~Galv~vDgAq~-~a~~~l---~~p~~~Ga 720 (993)
T PLN02414 655 ELRKAAEA-----HKDNLAALMVTYP-STHGVYEEG----IDEICDIIHDNGGQVYMDGANM-NAQVGL---TSPGFIGA 720 (993)
T ss_pred HHHHHHhc-----cCCCeEEEEEECC-Cccccccch----HHHHHHHHHHcCCEEEEEecCH-HhccCc---CCccccCC
Confidence 56666642 2346777766543 677887766 9999999999999999999884 211111 11112346
Q ss_pred cEEEe--ccccC----CCCCCceeeeccHHHHHhhhcCC--cccee------ecccC----CCccHHHHHHHHHHHHHhc
Q 002941 683 DIACY--GKLLT----GGVIPLAATLATNAVFDSFVGDS--KLKAL------LHGHS----YSAHALGCAAAAKSIKWFK 744 (863)
Q Consensus 683 Divt~--sKgLg----gG~~Pigav~~~~~i~~~l~~~~--~~~~~------~~~~T----~~~~pla~AAalAaL~~l~ 744 (863)
|++++ .|+++ +|---+|.+.++++++..+.... ....+ ....| +.++.+.+.++.+-+..+-
T Consensus 721 D~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG 800 (993)
T PLN02414 721 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG 800 (993)
T ss_pred CEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC
Confidence 99887 58664 23134788888988887765321 00000 01223 2245555566666666654
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce---EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-
Q 002941 745 DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT---LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR- 820 (863)
Q Consensus 745 ~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl---~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~- 820 (863)
.+++ .++.+....+..++.++|.+ ..+. ......|. -+.+.+..-+ ... ...+..+.++|.+.|+...
T Consensus 801 ~~Gl-~~~a~~a~~nAnYl~~rL~~---~~~~-~~~~~~~~~~hEfv~~~~~l~--~~~-g~~~~di~krL~d~Gihapt 872 (993)
T PLN02414 801 SEGL-TDASKIAILNANYMAKRLEG---HYPV-LFRGKNGTCAHEFIIDLRPFK--NTA-GIEPEDVAKRLMDYGFHAPT 872 (993)
T ss_pred HhHH-HHHHHHHHHHHHHHHHHHHh---hCCc-cccCCCCCeeeeEEEeccccc--ccc-CCCHHHHHHHHHHcCcEEee
Confidence 4444 22233333333333333322 1221 11111222 1112222100 000 0124679999999998764
Q ss_pred ---ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 ---PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 821 ---p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
|..+.+++.|.-..+++|||+++++|.....++.++.
T Consensus 873 ~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~~~ 912 (993)
T PLN02414 873 MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIADIE 912 (993)
T ss_pred eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4468999999999999999999999999988887643
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.8e-08 Score=109.30 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=135.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +....++||++|+..++...+. .| .+||+....|.+.
T Consensus 58 ~~~p~~~~Le~~lA~~~g~---~~~i~~~sG~~Ai~~~l~all~---------~G------------d~Vl~~~~~y~~t 113 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGG---AYGRAFSSGMAATDCLLRAVLR---------PG------------DHIVIPNDAYGGT 113 (388)
T ss_pred CCCccHHHHHHHHHHHhCC---CceEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchHH
Confidence 4567788999999999874 4556668999999998876521 12 5688888887653
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
....... .+ .++ +....++ ..|
T Consensus 114 ~~~~~~~-----~~---------~~g-------------i~~~~~d------------------------~~d------- 135 (388)
T PRK07811 114 FRLIDKV-----FT---------RWG-------------VEYTPVD------------------------LSD------- 135 (388)
T ss_pred HHHHHHh-----Cc---------CCC-------------eEEEEeC------------------------CCC-------
Confidence 2111110 00 000 0000000 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .++.+|++|.. .+..|.... +++|.++|++||+++|+||++. .+..+.. .+
T Consensus 136 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a-~~~~~~p-----~~ 195 (388)
T PRK07811 136 -LDAVRAAIT--------PRTKLIWVETP-TNPLLSITD----IAALAELAHDAGAKVVVDNTFA-SPYLQQP-----LA 195 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCcceecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCc-----hh
Confidence 133444442 24567888765 677776554 9999999999999999999984 3222222 22
Q ss_pred CCCcEEEe--ccccCC-CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 680 CVPDIACY--GKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 680 v~PDivt~--sKgLgg-G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
...|++++ +|.++| |-.-.|+++++ +++.+.+... ........+|..++.++..|+.+. ...++..++
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~L~tl~--~R~~~~~~n 267 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFL------QNGAGAVPGPFDAYLTLRGLKTLA--VRMDRHSEN 267 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhccCcHH--HHHHHHHHH
Confidence 34688754 699986 21235667664 6666654321 111122345666666665555432 223344444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
...+.+ .++++|.|..| .|.|.|+.+++..
T Consensus 268 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 268 AEAVAE--------FLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred HHHHHH--------HHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 444444 34455554322 3668899999963
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-08 Score=111.30 Aligned_cols=237 Identities=14% Similarity=0.098 Sum_probs=142.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..++...++ .| ..|++...+|.+
T Consensus 47 R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~all~---------~G------------D~Vl~~~p~y~~ 102 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTALLG---------PD------------DLLVAPHDCYGG 102 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHcC---------CC------------CEEEEcCCCcHH
Confidence 45677889999999998873 5799999999999988875521 12 568888888865
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......+.... + ..+.+. ...|
T Consensus 103 ~~~~~~~~~~~~--------------~--------------~~v~~~-----------------------d~~d------ 125 (382)
T TIGR02080 103 TYRLLNALAKKG--------------C--------------FRVLFV-----------------------DQGD------ 125 (382)
T ss_pred HHHHHHHHHhhc--------------C--------------eEEEEE-----------------------CCCC------
Confidence 322111110000 0 000000 0011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. .+..|.+++ +++|.++|+++|+++|+||++..+ ..... +
T Consensus 126 --~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~p-----l 184 (382)
T TIGR02080 126 --EQALRAALA--------QKPKLVLIETP-SNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQNP-----L 184 (382)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCCc-----h
Confidence 133445443 23566777754 788887765 789999999999999999999522 11111 1
Q ss_pred CCCCcEE--EeccccCCC-CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGG-VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG-~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
....|++ +++|.++|. =+..|++++ ++++.+.+... ....+...+|+.+..++..|+.|... .++..+
T Consensus 185 ~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~------~~~~g~~~sp~~a~l~lr~l~tl~~R--~~~~~~ 256 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWW------ANNLGVTGGAFDSYLTLRGLRTLVAR--MRLQQR 256 (382)
T ss_pred hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHH------HHccCCCCCHHHHHHHHcccchHHHH--HHHHHH
Confidence 1235877 568988742 145666665 57776665421 11223457888888877766655321 334445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
++..+.+ .++.||.|..| .|.|.|+.+++..
T Consensus 257 na~~~a~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 257 NAQAIVE--------YLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHHHH--------HHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 5544444 34455655433 3678899999963
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-07 Score=101.21 Aligned_cols=328 Identities=17% Similarity=0.143 Sum_probs=191.2
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
+|+|.+|+.++.- +|.. .-......++.++|...++...-+-+++..||+-|+|+|+.-... +|
T Consensus 17 ~~~V~~am~~~~~--~h~s--~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~---------pg--- 80 (383)
T COG0075 17 PPRVLLAMARPMV--GHRS--PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE---------PG--- 80 (383)
T ss_pred CHHHHHHhcCCCC--CCCC--HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC---------CC---
Confidence 5777777665432 1211 112355677778888887743114567889999999999976531 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+|+...++.-|.-+.=+.-. |. . .++.+..+
T Consensus 81 ---------dkVLv~~nG~FG~R~~~ia~~----~g----------------~-------~v~~~~~~------------ 112 (383)
T COG0075 81 ---------DKVLVVVNGKFGERFAEIAER----YG----------------A-------EVVVLEVE------------ 112 (383)
T ss_pred ---------CeEEEEeCChHHHHHHHHHHH----hC----------------C-------ceEEEeCC------------
Confidence 578888887666533222110 00 0 01111111
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
++..-+ .+.+++.|++ ...-+-++.+-+|. +.|++-| +++|.++|++||+++
T Consensus 113 ---------wg~~v~--------p~~v~~~L~~---~~~~~~V~~vH~ET----STGvlnp----l~~I~~~~k~~g~l~ 164 (383)
T COG0075 113 ---------WGEAVD--------PEEVEEALDK---DPDIKAVAVVHNET----STGVLNP----LKEIAKAAKEHGALL 164 (383)
T ss_pred ---------CCCCCC--------HHHHHHHHhc---CCCccEEEEEeccC----cccccCc----HHHHHHHHHHcCCEE
Confidence 000011 2456677763 11122455666666 4677777 999999999999999
Q ss_pred EEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcc---------ceee---cc
Q 002941 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL---------KALL---HG 723 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~---------~~~~---~~ 723 (863)
|+|-|- .|| |..+-.+.||+ |+++-| |+|++- --+|.+..+++..+.+...... ...+ ..
T Consensus 165 iVDaVs-S~G--g~~~~vd~wgi--Dv~itgSQK~l~~P-PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~ 238 (383)
T COG0075 165 IVDAVS-SLG--GEPLKVDEWGI--DVAITGSQKALGAP-PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGS 238 (383)
T ss_pred EEEecc-cCC--CcccchhhcCc--cEEEecCchhccCC-CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCC
Confidence 999776 454 45666777776 777664 999862 2256788899999888754211 0111 22
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCch
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~ 802 (863)
+.|+.......+-.++|+.+.+++ .++.+++-+.+.+.+++.+.++ ..+...+. .-.-.+.++...... .
T Consensus 239 ~p~Tppv~~i~aL~~al~~i~~EG-le~r~~RH~~~~~a~r~~~~al--Gl~~~~~~~~~s~tvta~~~P~g~-----~- 309 (383)
T COG0075 239 TPYTPPVNLIYALREALDLILEEG-LEARIARHRRLAEALRAGLEAL--GLELFADPERRSPTVTAIKVPEGV-----D- 309 (383)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCccccCcccCCCceEEEECCCCC-----C-
Confidence 334445556667788999988776 5566666666666554443322 11111111 111123334333221 1
Q ss_pred HHHHHHHHHHHH-CCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 803 ~~~~~l~~~l~e-~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
...+...+++ .|+.+.+. |..+||---=..+..++..++.+|+.+|.++.
T Consensus 310 --~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 310 --DKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred --cHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 1222334554 58877653 36778763334689999999999999998763
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-08 Score=111.11 Aligned_cols=233 Identities=14% Similarity=0.162 Sum_probs=140.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+ .+.++.++||.+|+..++. +++ .| ..||+....|+|
T Consensus 50 R~~~p~~~~le~~lA~leg---~~~~v~~~sG~aAi~~~l~-~l~---------~G------------D~VI~~~~~yg~ 104 (364)
T PRK07269 50 RTKNPTRAKLEETLAAIES---ADYALATSSGMSAIVLAFS-VFP---------VG------------SKVVAVRDLYGG 104 (364)
T ss_pred CCCCccHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHH-HhC---------CC------------CEEEEecCCcCc
Confidence 3456778899999999986 3689999999999999884 321 23 468887777754
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.... +.... +. +-+.+. | ..|
T Consensus 105 ~~~~-~~~~~----------------------~~-----~~~~~~----------------~---------~~d------ 125 (364)
T PRK07269 105 SFRW-FNQQE----------------------KE-----GRFHFT----------------Y---------ANT------ 125 (364)
T ss_pred hHHH-HHHHH----------------------hc-----CcEEEE----------------e---------cCC------
Confidence 3211 00000 00 000000 0 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .+..+|++|-. .+..|..+. +++|.++|+++|+++|+||++.. +. .....
T Consensus 126 --~~~l~~~i~--------~~TklV~lesP-~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~--~~~pl 184 (364)
T PRK07269 126 --EEELIAAIE--------EDTDIVYIETP-TNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PI--YQRPI 184 (364)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----cc--cCCch
Confidence 133445553 23456777764 677776664 99999999999999999999631 11 12234
Q ss_pred CCCCcEEEe--ccccCC-CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIACY--GKLLTG-GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDivt~--sKgLgg-G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+.-.|++++ .|.++| |=.=.|++++ ++++++.+... ........+|..++.++..|+.+.. ..++-.+
T Consensus 185 ~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~------~~~~G~~~s~~~a~l~~~~L~tL~~--r~~~~~~ 256 (364)
T PRK07269 185 ELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYN------LNTTGAVLSPFDSYLLMRGLKTLSL--RMERSTA 256 (364)
T ss_pred hhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHcCCCcHHH--HHHHHHH
Confidence 456899876 588875 2111345565 56777665421 0111245688888888877775521 1233334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe--cccceEEEEEEc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQ 792 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v--rg~Gl~~~iel~ 792 (863)
++.++ .+.++++|.|..| .|.|.++++++.
T Consensus 257 na~~~--------a~~L~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 257 NAQEV--------VAFLKKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHHH--------HHHHHhCCCccEEeCCCcCcEEEEEEC
Confidence 34333 3455678877655 588999999985
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-07 Score=102.80 Aligned_cols=235 Identities=12% Similarity=0.036 Sum_probs=122.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccc----------cccCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF----------WRLGV 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGf----------GRtG~ 671 (863)
+.|++.+.+ .+..++++|+++-- .+..|-.+.+.+.+++++++|++||+.||.|+++... |..+.
T Consensus 139 e~Le~~I~~----~~~~~~~~I~v~~p-~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~ 213 (431)
T cd00617 139 AKLEKLIDE----VGAENIPYIVLTIT-NNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDK 213 (431)
T ss_pred HHHHHHhCc----ccCCCccEEEEECC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCC
Confidence 456666642 22345777877632 4544335668899999999999999999999997421 12222
Q ss_pred cch---hhhcCCCCcEEEec--cccCCCCCCce-eeeccH-HHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHh
Q 002941 672 ETT---ADLLGCVPDIACYG--KLLTGGVIPLA-ATLATN-AVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWF 743 (863)
Q Consensus 672 ~~a---~e~~gv~PDivt~s--KgLggG~~Pig-av~~~~-~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l 743 (863)
..+ .+. +---|..+|| |..+ .|+| ++++++ ++++.+..... .+....||+| ++--++|...+|+..
T Consensus 214 si~ei~~e~-~s~sd~~~mS~~K~~~---~~~GG~i~~~d~~l~~~~~~~~~--~~~~~~~~gG~~~r~~~A~A~gL~e~ 287 (431)
T cd00617 214 SIAEIAREM-FSYADGCTMSAKKDGL---VNIGGFLALRDDELYEEARQRVV--LYEGFVTYGGMAGRDMEALAQGLREA 287 (431)
T ss_pred CHHHHHHHh-hccCCEEEEEeecCCC---CccceEEEeCcHHHHHHHHHhcc--ccCCccccccccHHHHHHHHHHHHhc
Confidence 111 111 1135666665 4333 3444 577775 58887763210 0111223444 233333332255532
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEe-
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRP- 821 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p- 821 (863)
.+.+..+...++.+++.+.| .+. ..|.+. ..-|.++.++...-....+...-.+..++.+|+ +.||.+.-
T Consensus 288 ~~~~~l~~~~~~r~~l~~~L----~~~--G~~v~~--P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~ 359 (431)
T cd00617 288 VEEDYLRHRVEQVRYLGDRL----DEA--GVPIVE--PAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVEL 359 (431)
T ss_pred ccHHHHHHHHHHHHHHHHHH----HHC--CCCccC--CCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEee
Confidence 22222222222223333322 211 233332 233455556655311000000012455665444 66777531
Q ss_pred ----------cC-------CEEEEecCC-CCcHHHHHHHHHHHHHHHHHHHH
Q 002941 822 ----------LG-------NVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 822 ----------~g-------~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
.+ +.+|+..|- ..|.+++|.+.++|.+..++-+.
T Consensus 360 g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~ 411 (431)
T cd00617 360 GIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED 411 (431)
T ss_pred cceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence 11 578887776 46999999999999988876543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-07 Score=107.74 Aligned_cols=225 Identities=12% Similarity=0.135 Sum_probs=124.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccccCCcchhhhcCCCCc-EE---EeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---t~sKgLg 692 (863)
.-+.+|+.| ++..|.+. +++.+++|.++|++ +|+++|.|||+..|.. ..... ....|| ++ +|||.++
T Consensus 242 tkai~l~nP--~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~--~~~~~~~~I~v~SfSK~f~ 314 (527)
T PRK09275 242 IKALFLVNP--SNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSL--FAVLPYNTILVYSFSKYFG 314 (527)
T ss_pred CCEEEEeCC--cCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCH--HHhCCCCEEEEeehhhhcc
Confidence 345566788 78898654 78899999999965 5999999999987731 11111 112343 33 6799886
Q ss_pred -CCCCCceeeeccHH-----HHHhhhcC--------------------------CccceeecccCCCccHHHHHH-HHHH
Q 002941 693 -GGVIPLAATLATNA-----VFDSFVGD--------------------------SKLKALLHGHSYSAHALGCAA-AAKS 739 (863)
Q Consensus 693 -gG~~Pigav~~~~~-----i~~~l~~~--------------------------~~~~~~~~~~T~~~~pla~AA-alAa 739 (863)
.| +.+|+++++++ +++.+... ...+.+...+|.+.+.....+ ++.+
T Consensus 315 mtG-~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~ 393 (527)
T PRK09275 315 ATG-WRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 393 (527)
T ss_pred CcH-hHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 67 89999999876 33322000 000112223444544433333 3222
Q ss_pred H-HHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCc---CCCCch-----HHHHHH
Q 002941 740 I-KWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGC---NAGYGS-----LYAASL 808 (863)
Q Consensus 740 L-~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~---~~~~~~-----~~~~~l 808 (863)
+ ..+++ +.+.+.+.+..++.++.+ .+.+ ..+. ......| .++.+++..-.. ...+.. ....++
T Consensus 394 ~~all~~~~~~~~~~~~~~~~Rr~~l----~~~L-g~~~-~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f 467 (527)
T PRK09275 394 LFALLDEEDAYKKAMKDIIRRRYKAL----YEGL-GLPE-PEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDL 467 (527)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHH----HHHc-CCCC-cCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHH
Confidence 1 22322 334444444433333322 2222 1121 1123445 444455542110 001100 013556
Q ss_pred HHHHH-HCCcEEEec---C---CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHHHHHh
Q 002941 809 LKKLR-EDGVYMRPL---G---NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDKVEEK 859 (863)
Q Consensus 809 ~~~l~-e~GV~~~p~---g---~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~~~~~ 859 (863)
+..|. +.||.+.|+ | +.+|++ ++ .+++++.++.++|.+.+++..+..++
T Consensus 468 ~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~y~~~~~~ 524 (527)
T PRK09275 468 LFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDEYYEEYKK 524 (527)
T ss_pred HHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666 569999874 2 468875 45 68899999999999999988876654
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-07 Score=105.25 Aligned_cols=320 Identities=16% Similarity=0.156 Sum_probs=173.8
Q ss_pred cHHHHHHHHHHHHhccccc--C-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
.+++.+|+.+.+..+.... . .+...+...+++++|+++++. +.++++|||+.|+..++... . .|
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga---e~a~vv~sgtaAl~l~l~~l-~---------~G 165 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA---EDALVVNNNAAAVLLALNAL-A---------AG 165 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh-C---------CC
Confidence 5889999998887664211 0 011234456889999999883 57889999999998887432 1 22
Q ss_pred ccCCCccccccccEEEEecCC-Cc-cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhh
Q 002941 495 FLGKDTTEKCIELKVLALKGS-YH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~s-YH-G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (863)
..||+.++. || |.+...-..- .. .|+....++.
T Consensus 166 ------------deVIvs~~e~~~~ggs~~i~~~~--------------~~-------------~G~~l~~v~~------ 200 (464)
T PRK04311 166 ------------KEVIVSRGELVEIGGAFRIPDVM--------------RQ-------------AGARLVEVGT------ 200 (464)
T ss_pred ------------CEEEEcchhhhhcCcchhhHHHH--------------HH-------------CCcEEEEECC------
Confidence 467777663 32 3221100000 00 0100000100
Q ss_pred ccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC--CC--ceeCCHHHHHHHHH
Q 002941 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA--GG--MHMVDPLFQRILVK 648 (863)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~--gG--~~~pp~~fL~~Lre 648 (863)
.+. .. .+++++.+. ++.++|+++-. .+. .| ..++ +++|.+
T Consensus 201 -----------------~~~-t~-----~~dle~aI~--------~~TklV~~vh~-sN~~i~G~~~~~d----l~eI~~ 244 (464)
T PRK04311 201 -----------------TNR-TH-----LRDYEQAIN--------ENTALLLKVHT-SNYRIEGFTKEVS----LAELAA 244 (464)
T ss_pred -----------------CCC-CC-----HHHHHHhcC--------ccCeEEEEEcC-CCccccccCCcCC----HHHHHH
Confidence 000 00 234455552 23566766654 332 23 2333 999999
Q ss_pred HHHHcCCeEEEecccccccccC---------CcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLG---------VETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG---------~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
+|++||+++|+|... |-.| .....+......|++++| |.++|. . .|++++++++++.+....
T Consensus 245 lak~~gi~vivD~gs---G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~~~~-- 317 (464)
T PRK04311 245 LGKEHGLPVVYDLGS---GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLKKHP-- 317 (464)
T ss_pred HHHHcCCeEEEECCC---cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHhhch--
Confidence 999999999999843 2222 111122223457999997 999876 2 777889999988776421
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChh--hH------------HhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ec
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQ--TN------------HNIIPERRILRELWDLELIQQISSHRTVQR--VV 781 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~--l~------------~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vr 781 (863)
..-.+..+-+..++-.++|..+.+++ +. +++.+++.++.+.|........ ....+.. .-
T Consensus 318 ----~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~-~~~~~~~~~~~ 392 (464)
T PRK04311 318 ----LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAF-AVEVVPSFSQV 392 (464)
T ss_pred ----hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCe-eEEEEEccCcc
Confidence 11222233445555555665432211 11 4444555555543322100000 0000100 01
Q ss_pred ccceE-------EEEEEccCCcCCCCchHHHHHHHHHHHH--CCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 782 ALGTL-------CAIELQAAGCNAGYGSLYAASLLKKLRE--DGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 782 g~Gl~-------~~iel~~~~~~~~~~~~~~~~l~~~l~e--~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|-|.+ +++.+.... ..+..+...|++ -.|+.+...+.+.+- +-++.++|++.++++|.+.+.
T Consensus 393 gggs~p~~~~~~~~v~~~~~~-------~~~~~l~~~lr~~~~~i~~r~~~~~~~ld-~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 393 GGGSLPVDRLPSAAVTLTPKD-------RSLEALAARLRLLPPPVIGRIEDGRLLLD-LRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred CCCCCcCCCCCeEEEEEeCCC-------CCHHHHHHHHhcCCCCEEEEEECCEEEEE-eCcCCHHHHHHHHHHHHHHhh
Confidence 22222 223332211 125677788886 568888877888876 557788999999999888753
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-08 Score=110.05 Aligned_cols=237 Identities=11% Similarity=0.053 Sum_probs=136.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++....|+++|+++.+ .+.+++++||++|+..++...++ .| .+|++...+|.+
T Consensus 49 R~~npt~~~Le~~lA~leg---~e~ivvt~gg~~Ai~~~l~all~---------~G------------d~Il~~~~~y~~ 104 (388)
T PRK08861 49 RSGNPNRGLLEQTLSELES---GKGAVVTNCGTSALNLWVSALLG---------PD------------DLIVAPHDCYGG 104 (388)
T ss_pred CCCCchHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHcC---------CC------------CEEEEcCCchHH
Confidence 3557778899999999987 37899999999999998865521 12 468877777754
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.... . .. ++....++ ..|
T Consensus 105 ~~-~~~~~~~----~---------~~-------------gi~v~~vd------------------------~~d------ 127 (388)
T PRK08861 105 TY-RLFNTRA----N---------KG-------------DFKVQFVD------------------------QSD------ 127 (388)
T ss_pred HH-HHHHHHH----h---------cC-------------CeEEEEEC------------------------CCC------
Confidence 32 1110000 0 00 00000000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. ++..+|++|-. .+..|.+++ +++|.++|+++|+++|+||++.. +..- .-.
T Consensus 128 --~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~-~~~~-----~pl 186 (388)
T PRK08861 128 --AAALDAALA--------KKPKLILLETP-SNPLVRVVD----IAELCQKAKAVGALVAVDNTFLT-PVLQ-----KPL 186 (388)
T ss_pred --HHHHHHhcC--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCccc-cccC-----CCc
Confidence 133444442 24567777754 788887776 78999999999999999999842 1111 112
Q ss_pred CCCCcEEEe--ccccCCC-CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIACY--GKLLTGG-VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDivt~--sKgLggG-~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
..-.|+++. .|.++|. -.-.|++++ ++++++.+..- ........+|..+...+-.|+-|.- ..++-.+
T Consensus 187 ~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~------~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~ 258 (388)
T PRK08861 187 ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW------GNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEE 258 (388)
T ss_pred ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH------HhccCCCCChHHHHHHHhcCCCHHH--HHHHHHH
Confidence 234788865 6988762 123455666 45565544321 0111233567776655555543311 1234444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
++..+.+ .++.||.|..| .|.|.|+.+++..
T Consensus 259 ~a~~~a~--------~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 259 SAQQILA--------YLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred HHHHHHH--------HHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 4444444 34455655432 4678899999963
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-08 Score=111.60 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=97.0
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GVIP 697 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg-G~~P 697 (863)
.+|++|-. .+..+ +..-+++|.++|++||+++|+|+++..+ ...... .+| .|+++ ++|.++| |-.-
T Consensus 149 klV~ie~p-t~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~p~---~~g--~Divv~S~tK~l~g~~~~~ 217 (389)
T PRK05968 149 KLLYLESP-TSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQRPI---TLG--VDLVIHSASKYLGGHSDTV 217 (389)
T ss_pred CEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccCch---hcC--CcEEEeeccccccCCCCeE
Confidence 45666754 44433 4456999999999999999999998432 222211 123 48775 5799986 3123
Q ss_pred ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
.|++++++++++.+.... .. ..+ ...+|..++.++..|+.+. ...++-.++++++ .+.++++|.|
T Consensus 218 gG~i~~~~~~~~~l~~~~--~~-~~g--~~~~~~~A~~~l~~L~tl~--~r~~~~~~~a~~l--------a~~L~~~p~v 282 (389)
T PRK05968 218 AGVVAGSKEHIARINAEA--YP-YLG--AKLSPFEAWLLLRGLRTLP--LRMKAHEASALEI--------ARRLKAHPVV 282 (389)
T ss_pred EEEEEECHHHHHHHHHHH--HH-hCC--CCCChHHHHHHHcccCcHH--HHHHHHHHHHHHH--------HHHHHhCCCc
Confidence 466778888887665311 00 112 3456777777766666541 1122223333333 3445667766
Q ss_pred eEec-------------ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE
Q 002941 778 QRVV-------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM 819 (863)
Q Consensus 778 ~~vr-------------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~ 819 (863)
..|. |.|.|+.+++... ..+.+|...|...++-+
T Consensus 283 ~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~--------~~~~~f~~~L~~~~~~~ 329 (389)
T PRK05968 283 ERVCHPALANHPPAGLSGTSGLFSFIFREG--------IDVRAFADALKLFRLGV 329 (389)
T ss_pred cEEECCCCCCChHHhCCCCceEEEEEECCH--------HHHHHHHHhCCccEEec
Confidence 5554 5678999998632 13456777776555433
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-07 Score=103.40 Aligned_cols=312 Identities=13% Similarity=0.070 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
++-.+++.+.+...... ..+...+|.++++++++. +..++++||++|+..+++.. . . . .|
T Consensus 10 ~~~~~~v~~~~~~~~~~-----~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~~~l~al-~-~--~----~G---- 69 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT-----QGPTVPAFEEALAEYVGA---KYAVAFNSATSALHIACLAL-G-V--G----PG---- 69 (380)
T ss_pred HHHHHHHHHHHhcCCcc-----CChhHHHHHHHHHHHHCC---CeEEEEcCHHHHHHHHHHHc-C-C--C----CC----
Confidence 34467777777653221 245578899999999884 45677789999999988765 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC-cchhhhhhccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~ 577 (863)
.+||+...+|++........+... ..++. |..+
T Consensus 70 --------d~Viv~~~~~~~~~~~~~~~G~~~-----------------------------~~~~~~~~~~--------- 103 (380)
T TIGR03588 70 --------DRVWTTPITFVATANCALYCGAKV-----------------------------DFVDIDPDTG--------- 103 (380)
T ss_pred --------CEEEeCCcchHHHHHHHHHcCCEE-----------------------------EEEecCCCcC---------
Confidence 568888887766532111110000 00110 0000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
..| .+.+++.+.+. ...++.+|+ |+ ...|...+ +++|.++|++||+++
T Consensus 104 ------------~~d--------~~~l~~~i~~~----~~~~t~~v~--~~--~~~G~~~~----~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 104 ------------NID--------EDALEKKLAAA----KGKLPKAIV--PV--DFAGKSVD----MQAIAALAKKHGLKI 151 (380)
T ss_pred ------------CcC--------HHHHHHHhhcc----cCCCceEEE--Ee--CCCCccCC----HHHHHHHHHHcCCEE
Confidence 011 24455666421 112344554 22 22454443 899999999999999
Q ss_pred EEecccccccccCCcchhhhcCC--CCcEEEec----cccCCCCCCceeeec-cHHHHHhhhc---CCcc--c-------
Q 002941 658 IFDEVFTGFWRLGVETTADLLGC--VPDIACYG----KLLTGGVIPLAATLA-TNAVFDSFVG---DSKL--K------- 718 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv--~PDivt~s----KgLggG~~Pigav~~-~~~i~~~l~~---~~~~--~------- 718 (863)
|.|++|+ +|-. +.-...|. .-|++++| |.++.| ..|+++. ++++.+.+.. .+.. .
T Consensus 152 I~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (380)
T TIGR03588 152 IEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQD 225 (380)
T ss_pred EEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccc
Confidence 9999995 4421 11122333 45999876 878654 3455665 4666665431 1100 0
Q ss_pred -------eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---ccc---ce
Q 002941 719 -------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VAL---GT 785 (863)
Q Consensus 719 -------~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg~---Gl 785 (863)
....++.+..+.+.++.+++.|+.++ +..++-+++.+++.+ .+++.|.+... .+. -.
T Consensus 226 ~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~--~~~~~r~~~~~~~~~--------~L~~~~~~~~~~~~~~~~~~~~ 295 (380)
T TIGR03588 226 EGPWYYEQQELGFNYRMTDIQAALGLSQLKKLD--RFVAKRREIAARYDR--------LLKDLPYFTPLTIPLGSKSAWH 295 (380)
T ss_pred cCcceeeeeccccccCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------HhcCCCCccCCCCCCCCEeEEE
Confidence 00112334456777777777776552 223333333444433 33344432211 111 12
Q ss_pred EEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------C------------CEEEEecCCCCcHHHH
Q 002941 786 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------G------------NVIYLMCGPCSSPEVC 839 (863)
Q Consensus 786 ~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------g------------~~lr~~ppl~~t~eei 839 (863)
+..+.+.... . .....+.+.|.++||.++.. + ..+.+-.....|++|+
T Consensus 296 ~~~i~~~~~~-~-----~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv 369 (380)
T TIGR03588 296 LYPILLDQEF-G-----CTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQ 369 (380)
T ss_pred EEEEEECCcC-C-----CCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHH
Confidence 3334443210 0 12567888899999977520 0 2344433344699999
Q ss_pred HHHHHHHHHHH
Q 002941 840 SQLLLKLYQRL 850 (863)
Q Consensus 840 d~~v~~L~~~l 850 (863)
+.++++|+++|
T Consensus 370 ~~i~~~l~~~~ 380 (380)
T TIGR03588 370 QRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHhC
Confidence 99999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-07 Score=108.17 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=100.9
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cch-hhhc-CC------CCcEE---E
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-ADLL-GC------VPDIA---C 686 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a-~e~~-gv------~PDiv---t 686 (863)
-+.+++.| ++..|.+ .+.+.+++|.++|++||+++|.||++..|...|. +.. .+.. ++ .+.++ +
T Consensus 212 k~l~l~nP--~NPTG~v-~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~S 288 (407)
T PLN02368 212 RAMVIINP--GNPTGQC-LSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHT 288 (407)
T ss_pred EEEEEECC--CCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEec
Confidence 34677889 7899955 4788999999999999999999999987743342 212 1111 11 12344 5
Q ss_pred eccccC--CCCCCceeee---ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--C---hhhHHhHHHHH
Q 002941 687 YGKLLT--GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--D---PQTNHNIIPER 756 (863)
Q Consensus 687 ~sKgLg--gG~~Pigav~---~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~---~~l~~~l~~~~ 756 (863)
|||++. .| +.+|+++ +++++++.+... ...+++.+.++..++.++|+--+ + +++.+.+.+..
T Consensus 289 fSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~-------~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (407)
T PLN02368 289 VSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKV-------ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGIL 360 (407)
T ss_pred CCcccccCCc-cceEEEEEeCCCHHHHHHHHHH-------hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Confidence 699984 67 8999998 488888887641 12345677788888888875211 0 11233322233
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
+.++++. +.+.+.+.+.|.+..+...|.|+.+
T Consensus 361 ~~~~~rr-~~~~~~L~~~~g~~~~~P~Gafy~~ 392 (407)
T PLN02368 361 ESLRRRA-RMMTDGFNSCKNVVCNFTEGAMYSF 392 (407)
T ss_pred HHHHHHH-HHHHHHHhCCCCeEeCCCCeeeEec
Confidence 3333322 1234555666777667778877764
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-07 Score=102.78 Aligned_cols=307 Identities=15% Similarity=0.111 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
.+..+++.+.++....+ ...+...+|+++++++++ ...++.++||+.|...|++.. . . ++
T Consensus 5 ~e~~~~v~~~l~s~~~~----~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l-~-~--------~~--- 64 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLS----TYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRAL-G-L--------GP--- 64 (363)
T ss_dssp HHHHHHHHHHHHHTCCS----SSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHT-T-G--------GT---
T ss_pred HHHHHHHHHHHHhCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhc-C-C--------Cc---
Confidence 45566777777654222 226789999999999998 468999999999999999876 2 1 11
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
..+||+-.-+|.+.....+.++..+.| .|. -|..+
T Consensus 65 -------gdeVi~p~~t~~~~~~ai~~~G~~pv~---------------~Di-------------~~~~~---------- 99 (363)
T PF01041_consen 65 -------GDEVIVPAYTFPATASAILWAGAEPVF---------------VDI-------------DPETL---------- 99 (363)
T ss_dssp -------TSEEEEESSS-THHHHHHHHTT-EEEE---------------E-B-------------ETTTS----------
T ss_pred -------CceEecCCCcchHHHHHHHHhccEEEE---------------Eec-------------cCCcC----------
Confidence 267999888887765544443321111 110 00000
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
. -| .+.+++.+.. +..|||+=-+ .| ... -+++|.++|++||+.||
T Consensus 100 ---------~--id--------~~~~~~~i~~--------~t~ai~~~h~-~G---~~~----d~~~i~~~~~~~~i~lI 144 (363)
T PF01041_consen 100 ---------N--ID--------PEALEKAITP--------KTKAILVVHL-FG---NPA----DMDAIRAIARKHGIPLI 144 (363)
T ss_dssp ---------S--B---------HHHHHHHHHT--------TEEEEEEE-G-GG---B-------HHHHHHHHHHTT-EEE
T ss_pred ---------C--cC--------HHHHHHHhcc--------CccEEEEecC-CC---Ccc----cHHHHHHHHHHcCCcEE
Confidence 0 11 2456677752 3455555443 33 333 28999999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhh---cCCcc----ceee----c
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---GDSKL----KALL----H 722 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~---~~~~~----~~~~----~ 722 (863)
-|=+|+ +| ..+.-...|-.-|+.+|| |.++.|- .|+++++ +++.+.+. ..+.. ..+. .
T Consensus 145 eD~a~a-~g---~~~~g~~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (363)
T PF01041_consen 145 EDAAQA-FG---ARYKGRPVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPP 218 (363)
T ss_dssp EE-TTT-TT----EETTEETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS
T ss_pred Eccccc-cC---ceeCCEeccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHHHhhhhhccCcCccccccccccccC
Confidence 999995 53 222223345556999886 8886431 3567765 55555443 22210 0111 3
Q ss_pred ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-------ccceEEEEEEccCC
Q 002941 723 GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-------ALGTLCAIELQAAG 795 (863)
Q Consensus 723 ~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-------g~Gl~~~iel~~~~ 795 (863)
++.|..+++.+|.+++-|+.+++. .+.-+++.+.+ .+.+.+.+.+.... .....+.+.+.+..
T Consensus 219 g~n~rm~~~~AAigl~QL~~L~~~--~~~R~~~a~~y--------~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~ 288 (363)
T PF01041_consen 219 GYNFRMSELQAAIGLAQLKRLDEI--IARRRENAQRY--------REALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA 288 (363)
T ss_dssp --B-B-BHHHHHHHHHHHHTHHHH--HHHHHHHHHHH--------HHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG
T ss_pred CcccccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHH--------HHHHhcCCCcccccccccccccccccccccccccc
Confidence 556778899999999988876431 22222222222 34455666543321 11223344444321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC-----------------------------CEEEEecCCCCcHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-----------------------------NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----------------------------~~lr~~ppl~~t~eeid~~v~~L 846 (863)
. .....+.+.|.++||-+++.- ..+.+-.....++++++.++++|
T Consensus 289 ----~--~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~i 362 (363)
T PF01041_consen 289 ----L--ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAI 362 (363)
T ss_dssp ----C--STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHH
T ss_pred ----c--chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhcc
Confidence 0 125678999999999886310 24455445567999999999887
Q ss_pred H
Q 002941 847 Y 847 (863)
Q Consensus 847 ~ 847 (863)
+
T Consensus 363 r 363 (363)
T PF01041_consen 363 R 363 (363)
T ss_dssp H
T ss_pred C
Confidence 4
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=107.93 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=105.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..++...++ +| ..||+....|.+
T Consensus 61 r~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al~~---------~G------------D~Vl~~~~~y~~ 116 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGLVK---------AG------------DDVLIPDNAYGP 116 (394)
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHHhC---------CC------------CEEEEecCCccc
Confidence 45677789999999999873 6899999999999999976531 22 568888888765
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.....-... .. . |+....++ . .+
T Consensus 117 ~~~~~~~~~--~~------------~-------------Gi~v~~vd-----------------------~-~~------ 139 (394)
T PRK07050 117 NRDHGEWLA--RD------------F-------------GITVRFYD-----------------------P-LI------ 139 (394)
T ss_pred HHHHHHHHH--Hh------------c-------------CeEEEEEC-----------------------C-CC------
Confidence 431100000 00 0 00000000 0 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .+..+|++|.. .+..| +...+++|.++|++||+++|+||++. .| ..+.--..
T Consensus 140 --~~~l~~~i~--------~~tklV~le~p-~Np~~----~~~di~~I~~ia~~~gi~livD~a~a-~~---~~~~~l~~ 200 (394)
T PRK07050 140 --GAGIADLIQ--------PNTRLIWLEAP-GSVTM----EVPDVPAITAAARARGVVTAIDNTYS-AG---LAFKPFEH 200 (394)
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCc----cHhhHHHHHHHHHHcCCEEEEECCcc-cc---cccCHHHc
Confidence 023444442 23457777764 55544 45569999999999999999999984 32 11111112
Q ss_pred CCCCcEEE--eccccCCCC-CCceeeec-cHHHHHhhh
Q 002941 679 GCVPDIAC--YGKLLTGGV-IPLAATLA-TNAVFDSFV 712 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~-~Pigav~~-~~~i~~~l~ 712 (863)
| .|+++ ++|.++||- .+.|++++ ++++++.+.
T Consensus 201 G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~ 236 (394)
T PRK07050 201 G--VDISVQALTKYQSGGSDVLMGATITADAELHAKLK 236 (394)
T ss_pred C--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHH
Confidence 3 48774 689997541 46787776 677777664
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-06 Score=100.53 Aligned_cols=201 Identities=17% Similarity=0.105 Sum_probs=113.7
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEE--ecccccccccCCcchhhhcCCCCcEEEe-----cccc
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLGCVPDIACY-----GKLL 691 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~--DEV~TGfGRtG~~~a~e~~gv~PDivt~-----sKgL 691 (863)
++++|++... +..|.+.+ +++|.++|+++|+++|+ |.+. +|.... .. ....|++++ ||.+
T Consensus 204 ~t~~v~l~~p--n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~--~g~~~~---~~--~~~~D~~~~s~~k~~~~~ 270 (447)
T PRK00451 204 DTAAVVVQYP--NFFGVIED----LEEIAEIAHAGGALFIVGVDPVS--LGLLKP---PG--EYGADIVVGEGQPLGIPL 270 (447)
T ss_pred CeEEEEEECC--CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHH--hccCCC---cc--cCCCCEEEECCCcCCCCC
Confidence 4666666653 45687755 99999999999999998 6553 222211 11 135688865 4443
Q ss_pred C-CCCCCceeeeccHHHHHhhhcC---------Cc------------cceeecccCC-Ccc-HHHHHHHHHHHHHhcChh
Q 002941 692 T-GGVIPLAATLATNAVFDSFVGD---------SK------------LKALLHGHSY-SAH-ALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 692 g-gG~~Pigav~~~~~i~~~l~~~---------~~------------~~~~~~~~T~-~~~-pla~AAalAaL~~l~~~~ 747 (863)
. || ..+|.+.+++++.+.+... .+ ...+.++... +.+ ++...++.++|+.+.+++
T Consensus 271 ~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g 349 (447)
T PRK00451 271 SFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEG 349 (447)
T ss_pred CCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHH
Confidence 2 34 4577888899888874210 00 0001111111 122 122233333455553333
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEE---EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC---AIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---- 820 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~---~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~---- 820 (863)
.+++.++...+++++.+. +.+.+.+.-. .|.++ .+.+. . ...++.++|.++|++..
T Consensus 350 -~~~~~~~~~~~~~~l~~~----L~~~~g~~~~--~~~~~~~~~v~~~-~---------~~~~~~~~L~~~gi~~~~~~~ 412 (447)
T PRK00451 350 -LRELAEQNHQKAHYLAER----LAEIGGVELF--DGPFFNEFVVRLP-K---------PAEEVNEALLEKGILGGYDLG 412 (447)
T ss_pred -HHHHHHHHHHHHHHHHHH----HhhcCCEEec--CCCeEEEEEEecC-C---------CHHHHHHHHHhcCCCCCcccc
Confidence 345555555566555433 3444443222 22222 23331 1 14678999999988742
Q ss_pred ec----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 821 PL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 821 p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+. .+.+|++++..+|+++++++++.|++.+
T Consensus 413 ~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 413 RYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 22 2688999888899999999999998654
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-06 Score=94.34 Aligned_cols=336 Identities=14% Similarity=0.096 Sum_probs=185.1
Q ss_pred CcHHHHHHHHHHHHhccccc--CCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 417 LQIELARDMGYTAARFGHVM--FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~--~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..++..+|+.+++....+.. ...+.-....+.||.|..-++.. ..+.|+.+.+=++|+|.|+....+ +
T Consensus 79 ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~---------p 149 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLAN---------P 149 (447)
T ss_pred CCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcC---------C
Confidence 35778889998887543211 11223345667888877766543 236799999999999999987621 1
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..|+.-+-+|-=. .+.+. |.+.. ..+ ++. .|.
T Consensus 150 ~------------aNILlPrPGfp~Y--~~~a~-----~~~lE-VR~-------ydl-------------LPe------- 182 (447)
T KOG0259|consen 150 G------------ANILLPRPGFPLY--DTRAI-----YSGLE-VRY-------YDL-------------LPE------- 182 (447)
T ss_pred C------------CceecCCCCCchH--HHhhh-----hcCce-eEe-------ecc-------------cCc-------
Confidence 2 3466665554211 11111 11100 000 000 111
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
..|+ -| ++.+|...+ ..++|.||+.| .+..|- +.+.+-|++|.++|+|+
T Consensus 183 -----------~~we--ID--------L~~veal~D-------ENT~AivviNP--~NPcGn-Vys~~HL~kiae~A~kl 231 (447)
T KOG0259|consen 183 -----------KDWE--ID--------LDGVEALAD-------ENTVAIVVINP--NNPCGN-VYSEDHLKKIAETAKKL 231 (447)
T ss_pred -----------ccce--ec--------hHHHHHhhc-------cCeeEEEEeCC--CCCCcc-cccHHHHHHHHHHHHHh
Confidence 0010 01 345655554 36889999999 577774 55889999999999999
Q ss_pred CCeEEEecccccccccCC-cchhhhcC-CCCcEEEe---cccc-CCCCCCceeeeccHHHHHhhhcCCcccee--ecccC
Q 002941 654 KIPVIFDEVFTGFWRLGV-ETTADLLG-CVPDIACY---GKLL-TGGVIPLAATLATNAVFDSFVGDSKLKAL--LHGHS 725 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~-~~a~e~~g-v~PDivt~---sKgL-ggG~~Pigav~~~~~i~~~l~~~~~~~~~--~~~~T 725 (863)
|+++|.|||+.-+-.-++ +-....|. +.| ++|+ ||+. -=| |.+|.++..+.- ..|.......++ +..-+
T Consensus 232 gi~vIaDEVY~~~vfg~~pfvpmg~fssiVP-VitlggisKrW~VPG-WRlGWi~~hD~~-gvf~~~~~~q~~~~~~~~~ 308 (447)
T KOG0259|consen 232 GIMVIADEVYGHTVFGDKPFVPMGKFSSIVP-VITLGGISKRWIVPG-WRLGWIALHDPR-GVFRDTKVVQGIKNFLDII 308 (447)
T ss_pred CCeEEehhhcceeecCCCCccchhhccccCc-eEeecccccccccCC-ceeeeEEEeccc-ccccchHHHHHHHHHHhcc
Confidence 999999999865522233 22333333 344 4554 6755 346 899998764321 111111000000 01112
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-EecccceEEE---EEEccCCcCCCCc
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RVVALGTLCA---IELQAAGCNAGYG 801 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~vrg~Gl~~~---iel~~~~~~~~~~ 801 (863)
-+.+.+-.+|.-.-|+.- .+++.+.-....+.-.+ ..-+.+++.|++. .++..|.|+- +++..-. .+.
T Consensus 309 ~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~----l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~---~~~ 380 (447)
T KOG0259|consen 309 PGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNAD----LCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFP---DIE 380 (447)
T ss_pred CCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHH----HHHHHHhcCCCcccCcCCCcceEEEeccchhhhc---ccc
Confidence 223333333333333321 23344433332222222 1234567788777 6788886554 3322100 000
Q ss_pred hHHHHHHHHHH-HHCCcEEEec---C--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKL-REDGVYMRPL---G--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 802 ~~~~~~l~~~l-~e~GV~~~p~---g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.-..|++.| +|+-|++-|+ | |.+|++ +++..+.+++++++|++..++-.
T Consensus 381 --dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 381 --DDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred --ccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHHHHHHhhh
Confidence 123456555 5789999885 2 888885 57788999999999999987654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-07 Score=104.20 Aligned_cols=312 Identities=16% Similarity=0.165 Sum_probs=169.1
Q ss_pred cHHHHHHHHHHHHhccccc--C-CCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
++++.+|+.+.+..+.... + .+........++++|+++++. +.++++|||+.|+..++... . .|
T Consensus 94 ~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---e~alvv~sg~aAi~l~l~~l-~---------~G 160 (454)
T TIGR00474 94 AEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA---EDALVVNNNAAAVLLALNTL-A---------KG 160 (454)
T ss_pred CHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHh-C---------Cc
Confidence 6899999999988764211 1 112235567899999999884 46778899999998887432 1 12
Q ss_pred ccCCCccccccccEEEEecCCC--ccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhh
Q 002941 495 FLGKDTTEKCIELKVLALKGSY--HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sY--HG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (863)
..||+.++.+ +|.+..-.... .. .|+....++.
T Consensus 161 ------------deVIvs~~e~v~~ggs~~i~~~~--------------~~-------------~G~~~~~v~~------ 195 (454)
T TIGR00474 161 ------------KEVIVSRGELVEIGGSFRIPDVM--------------EQ-------------SGAKLVEVGT------ 195 (454)
T ss_pred ------------CEEEECCChhhhhcchhhHHHHH--------------HH-------------cCCEEEEeCC------
Confidence 4677777664 22211100000 00 0000001100
Q ss_pred ccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC--CCc--eeCCHHHHHHHHH
Q 002941 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA--GGM--HMVDPLFQRILVK 648 (863)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~--gG~--~~pp~~fL~~Lre 648 (863)
.+. .. .+++++.+. .+.++|+++-. .+. .|. .++ +++|.+
T Consensus 196 -----------------~~~-~~-----l~dle~aI~--------~~T~lv~~~h~-sN~~~~G~~~~~d----l~~I~~ 239 (454)
T TIGR00474 196 -----------------TNR-TH-----LKDYEDAIT--------ENTALLLKVHT-SNYRIVGFTEEVS----IAELVA 239 (454)
T ss_pred -----------------CCC-CC-----HHHHHHhcC--------cCCEEEEEEcc-CcccccCCCCCCC----HHHHHH
Confidence 000 00 233444442 24566666654 332 343 444 999999
Q ss_pred HHHHcCCeEEEecccccccccCCc---------chhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVE---------TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~---------~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
+|++||+++|+|- |+|-.+.. ...+......|++++| |.|+|. . .|++++++++++.+....
T Consensus 240 la~~~g~~vivD~---~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~-- 312 (454)
T TIGR00474 240 LGREHGLPVMEDL---GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNP-- 312 (454)
T ss_pred HHHHcCCeEEEEC---CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhch--
Confidence 9999999999995 34433321 1112223357999999 999875 2 677889998888765422
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChh--h------------HHhHHHHHHHHHHHHHHHHHHHHh-cCC-CeeEe-
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQ--T------------NHNIIPERRILRELWDLELIQQIS-SHR-TVQRV- 780 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~--l------------~~~l~~~~~~l~~~l~~~l~~~~~-~~p-~v~~v- 780 (863)
..-.+..+-+..|+..+++..+-+++ + .++..+++.++.+.|.. .+. ... .|...
T Consensus 313 ----l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~----~~~~~~~~~~~~~~ 384 (454)
T TIGR00474 313 ----LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKA----ALGPGFELEIVPGL 384 (454)
T ss_pred ----hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHh----hccCCceEEEEEcC
Confidence 11112233445555566665543321 1 12445555555554322 111 000 01111
Q ss_pred --cccceE-------EEEEEccCCcCCCCchHHHHHHHHHHHHCC--cEEEecCCEEEEecCCCCcHHHHHHHHHHH
Q 002941 781 --VALGTL-------CAIELQAAGCNAGYGSLYAASLLKKLREDG--VYMRPLGNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 781 --rg~Gl~-------~~iel~~~~~~~~~~~~~~~~l~~~l~e~G--V~~~p~g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
-|-|.| +++.+.... ..+..+.+.|++.- |+.+...+.+.+- +-++.++|++.++++|
T Consensus 385 ~~~ggg~~p~~~l~~~~v~~~~~~-------~~~~~l~~~lr~~~~~ii~r~~~~~~~ld-~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 385 SQVGGGSLPDERLPSYAVTLTPDG-------LSAEKLEARLRELPPPIIGRIEDDRFLLD-LRTLLEDEEELLIEAL 453 (454)
T ss_pred CcccCCCCcCCCCCeEEEEEecCC-------CCHHHHHHHHhcCCCCEEEEEECCEEEEE-eCcCCHHHHHHHHHHh
Confidence 122322 223332211 12567777887654 8888777888776 5577888888888765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=96.24 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCC
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGG 694 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG 694 (863)
..+++++++++. ++..|...+ +++|.++|+++|+++|+||++.++...... .......+|+++.| |.+++
T Consensus 90 ~~~~~~v~~~~~-~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~- 161 (170)
T cd01494 90 KPNVALIVITPN-TTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLGG- 161 (170)
T ss_pred cCceEEEEEecC-cCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--cccccccCCEEEEEcccccCC-
Confidence 467899999997 888887776 499999999999999999999877554322 12223458999888 99987
Q ss_pred CCCceeeecc
Q 002941 695 VIPLAATLAT 704 (863)
Q Consensus 695 ~~Pigav~~~ 704 (863)
.+.|+++++
T Consensus 162 -~~~G~l~~~ 170 (170)
T cd01494 162 -EGGGVVIVK 170 (170)
T ss_pred -CceEEEEeC
Confidence 567777653
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-07 Score=104.98 Aligned_cols=201 Identities=13% Similarity=0.114 Sum_probs=123.1
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~ 708 (863)
...|.+.| +++|.+ ++||+++|+|=+|+ +|-. .+-.+. .|++++| |+|+|- .-+|.+.++++..
T Consensus 147 t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~~----iD~~~~s~~K~l~~P-~G~g~l~v~~~~~ 212 (378)
T PRK03080 147 TTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL--PLDWSK----LDVYTFSWQKVLGGE-GGHGMAILSPRAV 212 (378)
T ss_pred Cccceecc----chhhcc--ccCCCeEEEecccc-cccC--CCCHHH----CcEEEEehhhhCCCC-CceEEEEECHHHH
Confidence 34678887 677766 78999999999984 5422 222222 4988775 998763 2378889999998
Q ss_pred HhhhcCCc-cc--------e-------eecccCCC-ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 709 DSFVGDSK-LK--------A-------LLHGHSYS-AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 709 ~~l~~~~~-~~--------~-------~~~~~T~~-~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+.+..... +. . .+...|+. .+-.+..+..++|+.+.+.+-.++++++.+.+.+.+.+.+
T Consensus 213 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l---- 288 (378)
T PRK03080 213 ERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWA---- 288 (378)
T ss_pred HhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----
Confidence 87653110 00 0 01122322 3344555668899988654224566666666666554433
Q ss_pred hcCCCeeE----ec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHH
Q 002941 772 SSHRTVQR----VV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 772 ~~~p~v~~----vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~ 841 (863)
++.+.+.- -. ..+.++.+.+.+.. ......+...+.++|++++.. ++.+|+++...++++||+.
T Consensus 289 ~~~~~~~~~~~~~~~~s~~i~~~~~~~~~------~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~ 362 (378)
T PRK03080 289 EKTPWATPLVADPATRSNTSVTLDFVDAQ------AAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEA 362 (378)
T ss_pred HhCCCcccccCCccccCccEEEEEcCCch------HHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHH
Confidence 33332111 11 12346666654310 002234666677888888642 3689999888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 842 LLLKLYQRLEEFDK 855 (863)
Q Consensus 842 ~v~~L~~~l~~l~~ 855 (863)
++++|++++++++.
T Consensus 363 l~~al~~~~~~~~~ 376 (378)
T PRK03080 363 LTPWLDWAFERLKA 376 (378)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998776653
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-07 Score=107.18 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=90.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
+..+|++|-. .+..|.+.+ +++|.++|++||+++|+||++ +.+-.+.. .+...|++++ +|.++|.--
T Consensus 217 ~TklV~lesP-sNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~-a~~~~~~p-----l~~gaDivv~S~tK~l~G~gd 285 (464)
T PLN02509 217 QTKLVWLESP-TNPRQQISD----IRKIAEMAHAQGALVLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSD 285 (464)
T ss_pred CCeEEEEECC-CCCCCCHHH----HHHHHHHHHHcCCEEEEECCc-cccccCCh-----hhcCCcEEEecCcccccCCCc
Confidence 4567888876 788886543 999999999999999999998 34333332 2335798855 799976212
Q ss_pred Cc-eeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 697 PL-AATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 697 Pi-gav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.+ |++++ .+.+.+.+..- ........+|..|+.++..|+.+.. .+++..+++.++.+ .+++|
T Consensus 286 v~gG~v~~~~~~l~~~~~~~------~~~~g~~l~p~~A~l~lr~L~tL~~--R~~r~~~nA~~la~--------~L~~~ 349 (464)
T PLN02509 286 VMAGVLAVKGEKLAKEVYFL------QNSEGSGLAPFDCWLCLRGIKTMAL--RIEKQQENARKIAM--------YLSSH 349 (464)
T ss_pred cceeEEEeccHHHHHHHHHH------HHhcCCCcCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHH--------HHhcC
Confidence 33 44444 34444433210 0111122478888888888887632 23444555555544 34556
Q ss_pred CCeeEe------------------cccceEEEEEEc
Q 002941 775 RTVQRV------------------VALGTLCAIELQ 792 (863)
Q Consensus 775 p~v~~v------------------rg~Gl~~~iel~ 792 (863)
|.|..| .|.|.|+.+++.
T Consensus 350 p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~ 385 (464)
T PLN02509 350 PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG 385 (464)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeC
Confidence 655433 366889999883
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-06 Score=106.67 Aligned_cols=313 Identities=12% Similarity=0.060 Sum_probs=184.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
+...+|.+.|++++|-+ +-.++-++|+.|.-++|.++ |.|+..+|+. + +.++....+-||+...
T Consensus 530 q~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge~-~------------R~~vlip~saHgtnPa 593 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGEN-H------------RNICLIPVSAHGTNPA 593 (939)
T ss_pred HHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCCC-C------------CCEEEEEccccCcCHH
Confidence 45678999999999832 24567788888887788877 7888777752 2 3567778888998655
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
+....|-. +..++..... .-| .+
T Consensus 594 sa~~~G~~----------------------------Vv~V~~d~~G---------------------~iD--------le 616 (939)
T TIGR00461 594 SAAMAGMQ----------------------------VVPVNCDQDG---------------------NID--------LV 616 (939)
T ss_pred HHHHCCCE----------------------------EEEeccCCCC---------------------CcC--------HH
Confidence 43332200 1111110000 001 24
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc-ccccCCcchhhhcCC
Q 002941 603 YISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGC 680 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG-fGRtG~~~a~e~~gv 680 (863)
+|++.++. +++++++|++ -|- . .|.+.++ +++|.++|+++|.++++|=++.. .+ +. ...-..
T Consensus 617 ~L~~~i~~-----~~~~taaV~iT~ps--t-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~--~l---~~Pg~~ 680 (939)
T TIGR00461 617 DLKNKAEQ-----HGDELAAVMVTYPS--T-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQV--GL---TSPGDL 680 (939)
T ss_pred HHHHHHhh-----cCCceEEEEEEeCC--c-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCC--CC---CCcccc
Confidence 56666642 3356777766 453 3 4655544 89999999999999999988853 21 11 111123
Q ss_pred CCcEEEec--cccC-----CCCCCceeeeccHHHHHhhhcCCc---------cce-eecccCCCccHHHHHHHHHHHHHh
Q 002941 681 VPDIACYG--KLLT-----GGVIPLAATLATNAVFDSFVGDSK---------LKA-LLHGHSYSAHALGCAAAAKSIKWF 743 (863)
Q Consensus 681 ~PDivt~s--KgLg-----gG~~Pigav~~~~~i~~~l~~~~~---------~~~-~~~~~T~~~~pla~AAalAaL~~l 743 (863)
..|+++++ |+|+ || --+|.+.+++++...+....- ... ......+.++.+-+..+...|..+
T Consensus 681 GaDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~l 759 (939)
T TIGR00461 681 GADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMM 759 (939)
T ss_pred CCCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHH
Confidence 46999884 9776 55 456788888877666553210 000 011122456666666667777776
Q ss_pred cChhhHH---hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceE---EEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 744 KDPQTNH---NIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTL---CAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 744 ~~~~l~~---~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~---~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
=.+++.+ ....++.++.++| .+ ..+.+ . .+ .|.+ +.+.+...+ ........++.++|.+.|
T Consensus 760 G~~GL~~~a~~ailnAnYl~~rL----~~---~~~~l-~-~~~~~~~~hEfv~~~~~~~---~~~g~~~~dIakrL~d~G 827 (939)
T TIGR00461 760 GNEGLPKASVVAILNANYMATRL----KD---HYPIL-F-VGTLKHVAHECILDLRPLK---AKTGIEAIDVAKRLQDYG 827 (939)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh----hc---cCccc-c-cCCCCceeEEEEEeccchh---hhcCCCHHHHHHHHHhCC
Confidence 4444432 2333444554433 22 11211 1 12 1221 222222110 001123678999999999
Q ss_pred cEEE----ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 817 VYMR----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 817 V~~~----p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
+... |..+.+.+.|.-..|++|||++++++.+.-+++.++.
T Consensus 828 ~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~~~ 872 (939)
T TIGR00461 828 FHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINALV 872 (939)
T ss_pred eeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9764 3335788888888899999999999998888887753
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.3e-07 Score=105.16 Aligned_cols=219 Identities=13% Similarity=0.135 Sum_probs=121.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcCCCCc-EE---EeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---t~sKgLg 692 (863)
.-+.+|+.| ++..|.+ .+++.+++|.++|++| |+++|.|||+..|.. .+-. .....|| ++ +|||.++
T Consensus 241 ~kai~l~nP--~NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s--l~~~~~~~vI~v~SfSK~fg 313 (521)
T TIGR03801 241 IKALFVVNP--SNPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRS--LFAELPYNTIGVYSFSKYFG 313 (521)
T ss_pred CcEEEEeCC--CCCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccc--hhhhCCCCEEEEEcchhhcc
Confidence 345566789 7888854 5788899999999987 999999999976631 1111 1112343 33 5799886
Q ss_pred -CCCCCceeeeccHH-HHHh------------hhcC-C-----------------ccceeecccCCCccHHHHH-----H
Q 002941 693 -GGVIPLAATLATNA-VFDS------------FVGD-S-----------------KLKALLHGHSYSAHALGCA-----A 735 (863)
Q Consensus 693 -gG~~Pigav~~~~~-i~~~------------l~~~-~-----------------~~~~~~~~~T~~~~pla~A-----A 735 (863)
.| +.+|+++++++ +++. +... + ..+.+...+|.+.+..... +
T Consensus 314 ~~G-~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a 392 (521)
T TIGR03801 314 ATG-WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 392 (521)
T ss_pred Cch-hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 66 89999999754 2221 1100 0 0001112234433333222 3
Q ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCc---CCCCchH-----HHH
Q 002941 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGC---NAGYGSL-----YAA 806 (863)
Q Consensus 736 alAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~---~~~~~~~-----~~~ 806 (863)
+.+.|+. .+.+.+...+..++.++.+.+ .+ ..+ +...... |.++.+++..-.. ...|... ...
T Consensus 393 ~~all~~--~~~y~~~~~~~~~~R~~~l~~----~L-g~~-~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~ 464 (521)
T TIGR03801 393 LFALMDK--ENAYKAETKDICRRREKLLFR----GL-GLP-LQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPV 464 (521)
T ss_pred HHHHhcc--chhHHHHHHHHHHHHHHHHHH----hc-CCC-CcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHH
Confidence 3344431 233444444444444433322 22 111 1112233 4555566653110 0111110 134
Q ss_pred HHHHHHH-HCCcEEEec---C---CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHH
Q 002941 807 SLLKKLR-EDGVYMRPL---G---NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 807 ~l~~~l~-e~GV~~~p~---g---~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+++.+|. +.||.+.|+ | +.+|++ ++ .+++++.++.++|.+.+++..+
T Consensus 465 ~~~~~L~~e~gV~v~PG~~Fg~~~~~vRis--la~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 465 DVLFRLAEETGIVLLPGGGFGGPEWSVRVS--LANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHHHHHhCCEEEeCchhcCCCCCeEEEE--ecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 669999874 2 468875 44 6899999999999998877653
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-07 Score=111.44 Aligned_cols=313 Identities=12% Similarity=0.057 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEE-EeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRAY-FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v~-f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...++.+.|++++|- +.+. ..|+|+.|+.++|..+ |.|+..+|.. + +++|....+-||+..
T Consensus 542 ~~i~e~q~~l~eltG~---d~~sl~~~~ga~ge~agL~a~-r~~~~~~G~~-~------------r~~vlis~~aH~snp 604 (954)
T PRK05367 542 ELIDQLEAWLAEITGY---DAVSLQPNAGAQGEYAGLLAI-RAYHESRGEG-H------------RDVCLIPSSAHGTNP 604 (954)
T ss_pred HHHHHHHHHHHHHHCC---CCEEECccHHHHHHHHHHHHH-HHHhhccCCC-C------------CCEEEEEchhhhhhH
Confidence 4567888999999983 4554 4557788887888555 7776555541 1 245666677788765
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.++...|-. +..++.... ..-| .
T Consensus 605 ~sa~~~G~~----------------------------vv~v~~d~~---------------------G~iD--------~ 627 (954)
T PRK05367 605 ASAVMAGMK----------------------------VVVVACDEN---------------------GNID--------L 627 (954)
T ss_pred HHHHHCCCE----------------------------EEEECCCCC---------------------CCcC--------H
Confidence 554332200 111111100 0011 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvI-vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
++|++.++. +..++++|+ .-|- ..|++..+ +++|.++|+++|+++++|.++.+ +-.|.. .-.. .
T Consensus 628 ~~L~~~i~~-----~~~~la~V~it~ps--t~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~-~pg~--~ 692 (954)
T PRK05367 628 DDLRAKAEE-----HADNLAAIMITYPS--THGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA-RPGD--I 692 (954)
T ss_pred HHHHHHHhc-----cCCCeEEEEEEcCC--CCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC-Chhh--c
Confidence 456666642 233555554 4563 33332334 89999999999999999999942 122211 0011 2
Q ss_pred CCcEEEec--cccC----CCCCCceeeeccHHHHHhhhcCCcc-ceeec-ccCCCccHH----HHHHHHHHHHHhcChhh
Q 002941 681 VPDIACYG--KLLT----GGVIPLAATLATNAVFDSFVGDSKL-KALLH-GHSYSAHAL----GCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 681 ~PDivt~s--KgLg----gG~~Pigav~~~~~i~~~l~~~~~~-~~~~~-~~T~~~~pl----a~AAalAaL~~l~~~~l 748 (863)
-.|+++++ |.++ +|---+|.+.+++.+...+...... ..... .++....+. .+..+...+..+=.+++
T Consensus 693 GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Gl 772 (954)
T PRK05367 693 GADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGL 772 (954)
T ss_pred CCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 36999886 9774 3313355677777776665532100 00000 011111222 22223344444433434
Q ss_pred HHhHH---HHHHHHHHHHHHHHHHHHhcCCCee----EecccceEEEE-EEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 749 NHNII---PERRILRELWDLELIQQISSHRTVQ----RVVALGTLCAI-ELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 749 ~~~l~---~~~~~l~~~l~~~l~~~~~~~p~v~----~vrg~Gl~~~i-el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
.+... .++.++.++| .+. .+... ...-...++-+ .+... ....+..+.++|.+.|+...
T Consensus 773 r~~a~~~~~~A~Yl~~~L----~~~---~~~~~~~~~~~~~~e~i~~~~~~~~~------~g~~~~di~krL~d~G~~~~ 839 (954)
T PRK05367 773 RQATEVAILNANYIAKRL----KDH---YPVLYTGANGRVAHECILDLRPLKES------TGITVDDIAKRLIDYGFHAP 839 (954)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhh---cCccccCCCCCcccceEEEeeccccc------CCCCHHHHHHHHHHCCCeEe
Confidence 33332 3444444433 221 11100 00011122222 11110 00125679999999999875
Q ss_pred e----cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 P----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 821 p----~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
. ..+.+++.|.-..+++|||+++++|.....++.++.
T Consensus 840 t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~~~ 880 (954)
T PRK05367 840 TMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDEVE 880 (954)
T ss_pred ecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 357899999888999999999999999988887753
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-07 Score=104.20 Aligned_cols=170 Identities=12% Similarity=0.059 Sum_probs=97.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCC-C
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG-V 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG-~ 695 (863)
++.+|++|.. .+..|.+.+ +++|.++|++||+++|+|+++. .+...... ....|++++ .|.++|. -
T Consensus 131 ~tklv~le~p-snptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~~l-----~~g~Di~v~S~tK~l~G~~~ 199 (378)
T TIGR01329 131 KTKLVLLESP-TNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCNPL-----ELGADIVYHSATKFLAGHSD 199 (378)
T ss_pred CceEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCChh-----hcCCcEEEEecceeccCCcc
Confidence 4668888875 788887776 9999999999999999999983 22221111 224688765 6999752 1
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.-.|++++ ++++.+.+..- ........+|..++.++..|+.+. ...++-.+++..+.++| ++|
T Consensus 200 ~~~G~v~~~~~~~~~~~~~~------~~~~G~~~~~~~a~l~~~~l~tl~--~R~e~~~~na~~la~~L--------~~~ 263 (378)
T TIGR01329 200 VMAGVLAVKGEEIAKKVYFL------QNSTGSGLAPFDCWLLLRGIKTLA--IRIEKQQENARAIAMFL--------STH 263 (378)
T ss_pred ceeEEEEeCcHHHHHHHHHH------HHhcCCcCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHH--------HhC
Confidence 23566666 45554544321 111123346666654444443321 12344445555555433 333
Q ss_pred CCeeE------------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC
Q 002941 775 RTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 775 p~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g 823 (863)
|.|.. ..|.|.++.+++... ..+.+|...|...++.++-+|
T Consensus 264 ~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~--------~~~~~~~~~L~~~~i~~s~G~ 322 (378)
T TIGR01329 264 PRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV--------ALSKRLVEATKLFSITVSFGS 322 (378)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH--------HHHHHHHHhCcCcccccCCCC
Confidence 33321 136788999999321 135677777755555555444
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-07 Score=104.32 Aligned_cols=83 Identities=16% Similarity=0.014 Sum_probs=55.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++|-. .+..|.+.+ +++|.++|++||+++|+|++++.. ..+.. .+...|++++ .|.++|.--
T Consensus 134 ~t~lV~lesP-~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~p-----~~~gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 134 NTKALYLETP-SNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQNP-----LLLGADIVVHSGTKYLGGHSD 202 (380)
T ss_pred CceEEEEECC-CCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCCc-----cccCCCEEEecCceeccCCcc
Confidence 4678888865 778887765 889999999999999999998532 22222 2345688876 498875211
Q ss_pred C-ceeeec-cHHHHHhhh
Q 002941 697 P-LAATLA-TNAVFDSFV 712 (863)
Q Consensus 697 P-igav~~-~~~i~~~l~ 712 (863)
. .|++++ ++++++.+.
T Consensus 203 ~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 203 VVAGLVTTNNEALAQEIA 220 (380)
T ss_pred ceeeEEEecHHHHHHHHH
Confidence 2 344555 456655543
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-07 Score=103.31 Aligned_cols=288 Identities=14% Similarity=0.104 Sum_probs=161.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+|+++|+++-+. +.+++++||++|+..++...++ .| .+||+.+..|.+..
T Consensus 59 ~npt~~~Le~~iA~le~~---~~~~~~~sG~~Ai~~~l~all~---------~G------------D~Vvv~~~~Y~~t~ 114 (394)
T PRK09028 59 GTPTHFAFQAAIVELEGG---AGTALYPSGAAAISNALLSFLK---------AG------------DHLLMVDSCYEPTR 114 (394)
T ss_pred CCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEECCCcHHHH
Confidence 345567899999998653 4688999999999988865421 22 56888888886653
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
......- .. ++ +....++ . .+
T Consensus 115 ~l~~~~l--~~------------~G-------------i~v~~v~-----------------------~-~~-------- 135 (394)
T PRK09028 115 DLCDKIL--KG------------FG-------------IETTYYD-----------------------P-MI-------- 135 (394)
T ss_pred HHHHHhh--hh------------cc-------------eEEEEEC-----------------------C-CC--------
Confidence 2110000 00 00 0000000 0 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+. .+..+|++|.. .+..|.+. -+++|.++|++||+++|+||+++. +. .+.-+..
T Consensus 136 ~e~l~~~l~--------~~TklV~lesp-sNPtg~v~----dl~~I~~la~~~g~~lvvD~t~a~----p~--~~~Pl~~ 196 (394)
T PRK09028 136 GEGIRELIR--------PNTKVLFLESP-GSITMEVQ----DVPTLSRIAHEHDIVVMLDNTWAS----PI--NSRPFEM 196 (394)
T ss_pred HHHHHHhcC--------cCceEEEEECC-CCCCCcHH----HHHHHHHHHHHcCCEEEEECCccc----cc--cCCcccc
Confidence 123444442 24668999986 77776554 489999999999999999999952 21 1222334
Q ss_pred CCcEEEe--ccccCCC-CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 681 VPDIACY--GKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 681 ~PDivt~--sKgLggG-~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
-+|+++. .|.++|. =.-.|+++.++++.+.+.... ...| ...+|..|.-.+-.|+-|. -..++-.+++.
T Consensus 197 GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~----~~~G--~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~ 268 (394)
T PRK09028 197 GVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHS----YLMG--QCTSPDDVYLAMRGLRTLG--VRLAQHEKNAL 268 (394)
T ss_pred CceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHH----HhcC--CCCCHHHHHHHHcccCcHH--HHHHHHHHHHH
Confidence 5788865 6998652 133455666777766554210 0112 2346666665554444331 11234444444
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHH--HCCc
Q 002941 758 ILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR--EDGV 817 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~--e~GV 817 (863)
.+.+ .+++||.|..| .|.|.|+.+++...+ ...+.+|.+.|. ..|.
T Consensus 269 ~la~--------~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~------~~~~~~f~~~l~l~~~~~ 334 (394)
T PRK09028 269 KVAN--------WLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD------PKAVTALVEGMQHFKMGF 334 (394)
T ss_pred HHHH--------HHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC------HHHHHHHHHhCCcceEec
Confidence 4443 45566655444 367889999996321 112344444442 1111
Q ss_pred --------EEEe--------------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 002941 818 --------YMRP--------------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 818 --------~~~p--------------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~ 856 (863)
+..| .++.+||+ +.-|+.+.+++-|+++|+.+..+
T Consensus 335 slG~~~sLv~~p~~~~~~~~~~~~~~~~~liR~s----vGlEd~~dLi~Dl~~Al~~~~~~ 391 (394)
T PRK09028 335 SWGGFESLILGVFGINKLRTATNWDFSKPLIRLH----IGLEDVDDLIADLEAGFERYNAV 391 (394)
T ss_pred ccCCCcceeECCCCcCccCchhhhcCCCCeEEEE----eCcCCHHHHHHHHHHHHHHHHHH
Confidence 1011 12456664 44456777888888888776654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-07 Score=102.51 Aligned_cols=64 Identities=19% Similarity=0.110 Sum_probs=47.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLgg 693 (863)
+..+|++|.+ .++.|.+.+ +++|.++|++||+++|+|+++. .+... .......|+++ +.|.++|
T Consensus 155 ~tklV~ie~~-sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~-----~pl~~GaDivv~S~tK~lgg 220 (436)
T PRK07812 155 NTKAFFAETI-SNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLI-----RPLEHGADIVVHSATKYLGG 220 (436)
T ss_pred CCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----CchhcCCCEEEEecccccCC
Confidence 4568999987 888898887 9999999999999999999884 22221 11223478875 5798864
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=104.57 Aligned_cols=142 Identities=19% Similarity=0.184 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
+.+++.+.+ +++..+.++..|. ..|...+ +++|.++|++||+++|+||+|.+.-..+..+-.......
T Consensus 143 ~~l~~~l~~-----~~~~k~v~l~~p~---~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 143 ETFKKALIE-----HPDAKAAVITNPT---YYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred HHHHHHHHh-----CCCceEEEEECCC---CCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 456666642 2334456666774 3677665 899999999999999999999643222211111111234
Q ss_pred CcEEE--eccccCCCCCCceeee-ccHHHH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC--hhhHHhHHH
Q 002941 682 PDIAC--YGKLLTGGVIPLAATL-ATNAVF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD--PQTNHNIIP 754 (863)
Q Consensus 682 PDivt--~sKgLggG~~Pigav~-~~~~i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~--~~l~~~l~~ 754 (863)
.|+++ +.|.++| ++.++++ .+.+.. +.+.. .+....|.+.+.+.+++..++++++.+ .++.+++.+
T Consensus 211 ~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~-----~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~ 283 (294)
T cd00615 211 ADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNE-----ALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIE 283 (294)
T ss_pred CcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHH-----HHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 68875 4798854 4444443 443321 11211 111234556777888888888887742 345556666
Q ss_pred HHHHHHHH
Q 002941 755 ERRILREL 762 (863)
Q Consensus 755 ~~~~l~~~ 762 (863)
+.+.+++.
T Consensus 284 ~~~~~r~~ 291 (294)
T cd00615 284 LALYARQE 291 (294)
T ss_pred HHHHHHHH
Confidence 66665553
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-07 Score=101.89 Aligned_cols=210 Identities=14% Similarity=0.108 Sum_probs=118.0
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~P 697 (863)
+..|.+--. -+..|++.| +++ +++++|+++|+|=+++ +|-. ..-.+ .-|++++| |++++= --
T Consensus 129 ~~lV~~~h~-et~tG~~~p----i~~---I~~~~g~~~iVDavqs-~g~~--~idv~----~~D~~~~s~~K~lg~~-~G 192 (361)
T TIGR01366 129 VDVIAWAHN-ETSTGVAVP----VRR---PEGSDDALVVIDATSG-AGGL--PVDIA----ETDVYYFAPQKNFASD-GG 192 (361)
T ss_pred CCEEEEccc-CCccceecc----ccc---ccccCCCeEEEEcCcc-ccCC--CCCHH----HCCEEEEEchhhcCCC-Cc
Confidence 333433332 334677776 333 4689999999999985 4321 22222 15988886 888631 01
Q ss_pred ceeeeccHHHHHhhhcCC---ccce-e----------ecccCCCccHH-HHHHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 002941 698 LAATLATNAVFDSFVGDS---KLKA-L----------LHGHSYSAHAL-GCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~---~~~~-~----------~~~~T~~~~pl-a~AAalAaL~~l~~~~l~~~l~~~~~~l~~~ 762 (863)
++.+.++++..+.+.... ...+ + .-+.|++..++ .+.+..++|+++++.+-.++..++.+.+.+.
T Consensus 193 l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~ 272 (361)
T TIGR01366 193 LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSR 272 (361)
T ss_pred eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566888876654210 0000 0 01234444344 4457788899886552234555555565555
Q ss_pred HHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcH
Q 002941 763 WDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSP 836 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~ 836 (863)
+.+.+.+...-.+.+..-. .......+.+.+. .....+...|.++||.+.+. ++.+|+.....+|+
T Consensus 273 l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g--------~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~ 344 (361)
T TIGR01366 273 LYSWAQERPYATPFVTDPGKRSQVVGTIDFVDD--------IDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDP 344 (361)
T ss_pred HHHHHHhCCCcccCCCChhhcccceEEEECCCc--------cCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCH
Confidence 5433332211011111100 0112233444321 12456888888999998653 35799998778999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
+||++++++|+++++++
T Consensus 345 ~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 345 DDVEALTECVDWVVERL 361 (361)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999987653
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-06 Score=93.34 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=130.8
Q ss_pred cHHHHHHHHHHHHhccccc-CCCCCC-hHHHHHHHHHHhhcCCC--CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 418 QIELARDMGYTAARFGHVM-FPENVY-EPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~-~~~~~~-~~~~eLae~L~~~~p~~--~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..-|.+|+++.+....... ..++-+ +....|++++.++.+.. ..+.|+.+++..+|.-.++...+. .
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~---------~ 116 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN---------P 116 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC---------C
Confidence 3456666666665532111 122323 44566777777755432 135799999999999888865521 2
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| ..||.++-.|--.......+++.+.|...- ...+. .. +.++
T Consensus 117 G------------DeVii~eP~fd~Y~~~~~maG~tpv~v~~~-----~~~g~---------------~~-s~~~----- 158 (420)
T KOG0257|consen 117 G------------DEVIVFEPFFDCYIPQVVMAGGTPVFVPLK-----PKEGN---------------VS-SSDW----- 158 (420)
T ss_pred C------------CEEEEecCcchhhhhHHhhcCCcceeeccc-----ccccc---------------cc-Cccc-----
Confidence 2 689999999988877666666554442110 00000 00 0000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
..| .+.+|..+- +..-+.||..| ++..|-+. +++-|++|.+||++|
T Consensus 159 ----------------~~D--------~~~le~~~t-------~kTk~Ii~ntP--hNPtGkvf-sReeLe~ia~l~~k~ 204 (420)
T KOG0257|consen 159 ----------------TLD--------PEELESKIT-------EKTKAIILNTP--HNPTGKVF-SREELERIAELCKKH 204 (420)
T ss_pred ----------------cCC--------hHHHHhhcc-------CCccEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHC
Confidence 011 134555553 34557788888 78888554 788899999999999
Q ss_pred CCeEEEecccccccccCC---cchhhhcCCCCcE----E---EeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 654 KIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI----A---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi----v---t~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
|+++|.|||+.-+-..|. .+++. |+| + .+||.++ -| +.+|.+++.+.++....
T Consensus 205 ~~lvisDevYe~~v~d~~~h~r~asl-----Pgm~ertitvgS~gKtf~~TG-WrlGW~igp~~L~~~~~ 268 (420)
T KOG0257|consen 205 GLLVISDEVYEWLVYDGNKHIRIASL-----PGMYERTITVGSFGKTFGVTG-WRLGWAIGPKHLYSALF 268 (420)
T ss_pred CEEEEEhhHhHHHhhCCCcceeeecC-----CchhheEEEeccccceeeeee-eeeeeeechHHhhhhHH
Confidence 999999999976655553 23332 543 3 4689665 35 99999999888887665
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-07 Score=103.42 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=100.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.+++++||+.|+..++...++ .| .+||+....|+|.
T Consensus 61 ~~~p~~~~Le~~lA~leg~---~~al~~~sG~~Ai~~al~~ll~---------~G------------D~Vlv~~~~y~~t 116 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGG---IGALAVSSGQAAITYSILNIAS---------AG------------DEIVSSSSLYGGT 116 (431)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEccCchhhH
Confidence 4567788999999999873 6789999999999999865421 12 4688887776654
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
......... . .|+....+|. .|
T Consensus 117 ~~~~~~~~~--~-------------------------~Gv~v~~vd~------------------------~d------- 138 (431)
T PRK08248 117 YNLFAHTLP--K-------------------------LGITVKFVDP------------------------SD------- 138 (431)
T ss_pred HHHHHHHHH--h-------------------------CCEEEEEECC------------------------CC-------
Confidence 211111000 0 0000111110 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. +++.+|++|.. .+..|.+.+ +++|.++|++||+++|+|+++. .+.. ..-..
T Consensus 139 -~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a-~~~~-----~~pl~ 198 (431)
T PRK08248 139 -PENFEAAIT--------DKTKALFAETI-GNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA-SPYL-----LRPIE 198 (431)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC-cccc-----CChhH
Confidence 133444442 24567778765 788887776 7899999999999999999974 1111 11112
Q ss_pred CCCcEEEe--ccccCCCCCCceeeec
Q 002941 680 CVPDIACY--GKLLTGGVIPLAATLA 703 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~Pigav~~ 703 (863)
...|+++. .|.++|.-..+|++++
T Consensus 199 ~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 199 HGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred cCCCEEEEcCccccCCCCCceEEEEE
Confidence 34788765 6999853245666655
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.6e-07 Score=102.50 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=94.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...++...+|+++|+++.+. +..++++||+.|+.+|+...++ .| ..||+....|+|
T Consensus 65 r~~~pt~~~le~~la~l~g~---~~~v~fsSG~~Ai~~al~~ll~---------~G------------d~VI~~~~~y~~ 120 (437)
T PRK05613 65 RLTNPTVEALENRIASLEGG---VHAVAFASGQAAETAAILNLAG---------AG------------DHIVTSPRLYGG 120 (437)
T ss_pred CccChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHhcC---------CC------------CEEEECCCccHH
Confidence 34567888999999998873 5788888999999988764421 12 468887777766
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
........-. ..+. .+..++.| .|
T Consensus 121 t~~~~~~~l~--------------~~Gi-----------~v~~vd~~-------------------------~d------ 144 (437)
T PRK05613 121 TETLFLVTLN--------------RLGI-----------EVTFVENP-------------------------DD------ 144 (437)
T ss_pred HHHHHHHHHH--------------hcCe-----------EEEEECCC-------------------------CC------
Confidence 5211111000 0000 00001100 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. .+..|.+.+ +++|.++|+++|+++|+|.++. .|.. .--..+
T Consensus 145 --~e~l~~~l~--------~~tk~V~~e~~-~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~g~~---~~p~~~ 205 (437)
T PRK05613 145 --PESWQAAVQ--------PNTKAFFGETF-ANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-TAAL---VRPLEL 205 (437)
T ss_pred --HHHHHHhCC--------ccCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-cccc---cChHHh
Confidence 134555543 23557888875 566676666 9999999999999999999983 3222 111123
Q ss_pred CCCCcEEEec--cccCC
Q 002941 679 GCVPDIACYG--KLLTG 693 (863)
Q Consensus 679 gv~PDivt~s--KgLgg 693 (863)
| .|++++| |-++|
T Consensus 206 G--aDivv~S~~K~l~G 220 (437)
T PRK05613 206 G--ADVVVASLTKFYTG 220 (437)
T ss_pred C--CCEEEeeccceecC
Confidence 4 5999775 88875
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-05 Score=90.55 Aligned_cols=232 Identities=15% Similarity=0.042 Sum_probs=122.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc-----------ccC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW-----------RLG 670 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG-----------RtG 670 (863)
+.+++.+.. .+..+++.+.++-.++..|| .+.+...+++++++|++||+.||.|=++. +| ..|
T Consensus 164 d~Le~~I~~----~~~~~~~lV~a~itvn~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~ 237 (460)
T PRK13237 164 DKLQALIDE----VGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQD 237 (460)
T ss_pred HHHHHHhcc----ccCCccCceEEEEecccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCC
Confidence 456666642 23345554554433243345 66678889999999999999999998884 43 111
Q ss_pred Ccch--hhhcCCCCcEEEec--cccCCCCCCc-eeeec-cHHHHHhhhcCCccceeecccCCCccHH-HHHHHHHHHHHh
Q 002941 671 VETT--ADLLGCVPDIACYG--KLLTGGVIPL-AATLA-TNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKWF 743 (863)
Q Consensus 671 ~~~a--~e~~gv~PDivt~s--KgLggG~~Pi-gav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pl-a~AAalAaL~~l 743 (863)
+.-. ....+-..|++||| |.++. |+ |++++ ++++++.++.-.. .+....||+|-.. -++|.--.|...
T Consensus 238 ~~i~ei~~e~~s~aD~~t~S~~K~~~~---~~GG~i~t~D~eL~~~~r~~~~--~~eG~~tygg~~grd~~alAvgl~E~ 312 (460)
T PRK13237 238 KSIKEIVHEMFSYADGCTMSGKKDCLV---NIGGFLAMNDEELFDEAKELVV--VYEGMPSYGGMAGRDMEAMAIGIEES 312 (460)
T ss_pred CcHhHHhhhccCcCcEEEEeCCCCCCC---CCceEEEECCHHHHHHHHHhcc--ccCCCcCCCChhhhHHHHHHhHHHhh
Confidence 1100 01112246998886 65542 33 34544 5777776654210 1112336665322 222221123333
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCchHHHHHHHHHHH-HCCcEE
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGSLYAASLLKKLR-EDGVYM 819 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~~~~~~l~~~l~-e~GV~~ 819 (863)
.++++..+-..+.++|.+.|.+ ...|.+....| .-+.|+...-. ....| -+..++.+|+ +-||-.
T Consensus 313 ~~~~y~~~ri~~~~~l~~~L~~------~Gvpv~~p~gg--H~v~vda~~~lph~~~~~~---p~~al~~~ly~~~GiR~ 381 (460)
T PRK13237 313 VQYEYIEHRVGQVRYLGEKLLA------AGVPIVEPVGG--HAVFLDARRFLPHLPQDQF---PAQALAAELYIESGVRS 381 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHH------CCCceecCCCc--eEEEEEhHHhCCCCCcccC---hHHHHHHHHHHHhCcCe
Confidence 3446666666677777765432 23455544333 33334433210 11122 2344555554 334433
Q ss_pred -------E---ecC--------CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHH
Q 002941 820 -------R---PLG--------NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 820 -------~---p~g--------~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~ 855 (863)
. |.+ ..+|+..|-- -|.+++|.+.++|....++-+.
T Consensus 382 ~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 382 MERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred EeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 1 111 4567766664 4999999999999887765443
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.6e-06 Score=93.95 Aligned_cols=219 Identities=14% Similarity=0.064 Sum_probs=118.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh----h
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD----L 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e----~ 677 (863)
+.+++.+.+ ..++.+++|+..|- .+..|. .+-+++|.++|++||+.+|+|+++. ++ ..+..+ .
T Consensus 192 e~Le~aIt~----~~~kai~~Vv~Tp~-t~~~g~----~ddL~eIa~la~k~gI~lIvDaAyg-~~---~~~~~~~~~~g 258 (444)
T TIGR03531 192 EDIERAIEE----IGPDNILCVLSTTS-CFAPRS----PDDIEEIAKICANYDIPHIVNNAYG-LQ---SNKYMELINKA 258 (444)
T ss_pred HHHHHHHHh----ccCCCEEEEEEcCC-cCCCcc----hhCHHHHHHHHHHcCCEEEEECcCc-Cc---Chhhhhhhhcc
Confidence 456677753 12256788887774 333232 3349999999999999999999994 42 111111 1
Q ss_pred cCC-CCcEEEe--ccccCCCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 678 LGC-VPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 678 ~gv-~PDivt~--sKgLggG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
... ..|++++ .|.+... ..-|++++ ++++++.+... ..+ .....| +..+..+.+. +-.+. ++++.
T Consensus 259 ~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~~~------y~g-~~~~s~-~~~~~~~ll~-~G~~g-~~~li 327 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEISKS------YPG-RASASP-SLDVLITLLS-LGSKG-YLELL 327 (444)
T ss_pred ccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHHHh------ccC-CCCChH-HHHHHHHHHH-hCHHH-HHHHH
Confidence 112 3588876 5877531 11344546 67888777531 111 222222 3333333333 32233 34444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE----Eec------
Q 002941 754 PERRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM----RPL------ 822 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~----~p~------ 822 (863)
+.-..+.+.+.+.|.+...++. .+.+++.--.-+++.+.... ......+...|+.++|-- .+.
T Consensus 328 ~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~------~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~ 401 (444)
T TIGR03531 328 KERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK------GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVG 401 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc------ccCHHHHHHHHHhCCCCCceeecCCCceEEC
Confidence 4455556666666666655554 24444444444555554221 112556777787776621 111
Q ss_pred -------C--------CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 823 -------G--------NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 823 -------g--------~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
| .-+......-++.+|||.++++|++++
T Consensus 402 ~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 402 GCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 1 012222333468999999999998753
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-06 Score=96.93 Aligned_cols=155 Identities=12% Similarity=0.044 Sum_probs=83.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCC-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV- 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~- 695 (863)
+..+|++|.. .+..|.+.+ +++|.++|+++|+++|+||++..+ -.... . .+ ..|+++. +|.++|.-
T Consensus 138 ~tklV~l~~p-~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~~--~-~~--g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 138 NTKLFYVETP-SNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQKP--L-DL--GADVVLHSATKFLAGHSD 206 (390)
T ss_pred CceEEEEECC-CCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccCc--h-hh--CCcEEEeecceeccCCcc
Confidence 4567777765 678887765 899999999999999999998532 11111 1 12 3588754 69886410
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH--HH---
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL--IQ--- 769 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l--~~--- 769 (863)
.=.|++++ ++++++.+.. +...+....+|..+..++..++.+ +...++..++...+.++|.+.- .+
T Consensus 207 ~laG~~v~~~~~~~~~l~~------~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L~~~~~v~~v~y 278 (390)
T PRK08064 207 VLAGLAVVKDEELAQKLYF------LQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYLQEHPKVQNVYY 278 (390)
T ss_pred ceeEEEEeCCHHHHHHHHH------HHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHhcCCCcceEEC
Confidence 11243444 5677777653 112223334555555444333322 1122344444444444332210 00
Q ss_pred -HHhcCCCe----eEecccceEEEEEEc
Q 002941 770 -QISSHRTV----QRVVALGTLCAIELQ 792 (863)
Q Consensus 770 -~~~~~p~v----~~vrg~Gl~~~iel~ 792 (863)
.+..+|.. ....|.|.++.+++.
T Consensus 279 p~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (390)
T PRK08064 279 PGLQTHLGFDIQQSQATSAGAVLSFTLQ 306 (390)
T ss_pred CCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 00111211 123478889999995
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-05 Score=93.74 Aligned_cols=240 Identities=11% Similarity=0.057 Sum_probs=123.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.|++.+++.. ..+....+|+..-- ....|.+-| +++|.++|++||+.|.+|=++.|+-..-..+-...-|+
T Consensus 224 ~~L~~~i~~~~--~~g~~p~~vvataG-TT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie 296 (490)
T PLN02880 224 ELLSEAISTDL--SSGLIPFFLCATVG-TTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE 296 (490)
T ss_pred HHHHHHHHHHH--HCCCccEEEEEecC-CCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch
Confidence 44555554311 11234455555432 344566666 99999999999999999988866532211111122354
Q ss_pred CCcEEEe--ccccCCCCCCceeeeccHH--HHHhhhcCCcc-----c---eeecc--cCC-CccHHHHHHHHHHHHHhcC
Q 002941 681 VPDIACY--GKLLTGGVIPLAATLATNA--VFDSFVGDSKL-----K---ALLHG--HSY-SAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~Pigav~~~~~--i~~~l~~~~~~-----~---~~~~~--~T~-~~~pla~AAalAaL~~l~~ 745 (863)
.+|-+++ =|.+... ++.|+++++.. +.+.+...... . .+... .+. .+..........+|+.+=.
T Consensus 297 ~aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~ 375 (490)
T PLN02880 297 EADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV 375 (490)
T ss_pred hcCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCH
Confidence 6898887 4998766 67788887642 22323211100 0 00000 000 1112222334445665544
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-ec-
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PL- 822 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-p~- 822 (863)
+++.+.+.+ .-.+.+++ .+.+++.+.+.-+. ..-.++.+.+...............++.++|.+.|-+.. +.
T Consensus 376 ~g~~~~i~~-~~~lA~~~----~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~ 450 (490)
T PLN02880 376 ENLQSYIRN-HIKLAKEF----EQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV 450 (490)
T ss_pred HHHHHHHHH-HHHHHHHH----HHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 444444431 11333333 23344454332221 123355566543211111112344567777777775543 21
Q ss_pred --C-CEEEEecC-CCCcHHHHHHHHHHHHHHHHHHH
Q 002941 823 --G-NVIYLMCG-PCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 823 --g-~~lr~~pp-l~~t~eeid~~v~~L~~~l~~l~ 854 (863)
| ..+|++.. +.++++|++.+++.|.+..+++.
T Consensus 451 ~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 451 LSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 56777643 34577999999999999887764
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-06 Score=98.59 Aligned_cols=238 Identities=17% Similarity=0.125 Sum_probs=139.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...++-...|+++|+++-+. +.++.++||-.|+.+++...++ +| ..||.....|+|
T Consensus 51 R~gnPt~~~le~~la~Le~g---~~a~~~~SGmaAi~~~l~~ll~---------~G------------d~iv~~~~~Y~~ 106 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGG---EDALLFSSGMAAISAALLALLK---------PG------------DHIVASDDLYGG 106 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHS----------TT------------BEEEEESSSSHH
T ss_pred ccccccHHHHHHHHHHhhcc---cceeeccchHHHHHHHHHhhcc---------cC------------CceEecCCccCc
Confidence 45678889999999998773 6788899999999888875532 23 579999999988
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.....-... ..++ +....+ +..|
T Consensus 107 t~~~~~~~l--------------~~~g-------------v~v~~~------------------------d~~d------ 129 (386)
T PF01053_consen 107 TYRLLEELL--------------PRFG-------------VEVTFV------------------------DPTD------ 129 (386)
T ss_dssp HHHHHHHCH--------------HHTT-------------SEEEEE------------------------STTS------
T ss_pred chhhhhhhh--------------cccC-------------cEEEEe------------------------Cchh------
Confidence 532211110 0000 000000 0011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC-CeEEEecccccccccCCcchhhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g-ilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
.+.+++.++ +++.+|++|+. .+...-++. ++++.++|+++| +++|+|...... ..+.-
T Consensus 130 --~~~l~~~l~--------~~t~~v~~Esp-sNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp------~~~~p 188 (386)
T PF01053_consen 130 --LEALEAALR--------PNTKLVFLESP-SNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP------YNQNP 188 (386)
T ss_dssp --HHHHHHHHC--------TTEEEEEEESS-BTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT------TTC-G
T ss_pred --HHHHHhhcc--------ccceEEEEEcC-CCccccccc----HHHHHHHHHHhCCceEEeeccccce------eeecc
Confidence 245667774 37899999997 666543333 999999999999 999999887421 23333
Q ss_pred cCCCCcEEEe--ccccCC-CCCCceeeecc--HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 678 LGCVPDIACY--GKLLTG-GVIPLAATLAT--NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 678 ~gv~PDivt~--sKgLgg-G~~Pigav~~~--~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
+..-.|+++. .|-++| |=.-.|+++++ +++++.+.... ...|. ..+|..|...+-.|+-+. -..++.
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~----~~~G~--~~~p~da~ll~rgl~Tl~--~R~~~~ 260 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR----RLLGA--TLSPFDAWLLLRGLRTLP--LRMERQ 260 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH----HHHT---B--HHHHHHHHHHHTTHH--HHHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh----hhcCc--cchHHHHHHHhcCCCcHH--HHHHHH
Confidence 3334798865 698864 21235566654 47777654311 01222 234555555444444331 112344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEccC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAA 794 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~~ 794 (863)
.+++.++. +.+++||.|..|. |.|.|++|++...
T Consensus 261 ~~nA~~lA--------~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~ 312 (386)
T PF01053_consen 261 NENAEALA--------EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG 312 (386)
T ss_dssp HHHHHHHH--------HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH
T ss_pred HHHHHHHH--------HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc
Confidence 44444443 4566788887664 6677999999864
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-06 Score=97.97 Aligned_cols=237 Identities=15% Similarity=0.105 Sum_probs=140.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...+|-...|+++|+++-+ .+.+++++||..|+.+++...++ .| ..||+....|+|
T Consensus 58 R~~nPt~~~le~~la~LEg---~~~a~~~~SGmaAi~~~~~~ll~---------~G------------D~Vv~~~~~Yg~ 113 (395)
T PRK08114 58 RRGTLTHFSLQEAMCELEG---GAGCALYPCGAAAVANAILAFVE---------QG------------DHVLMTGTAYEP 113 (395)
T ss_pred CCCChhHHHHHHHHHHHhC---CCeEEEEhHHHHHHHHHHHHHcC---------CC------------CEEEEeCCCcHH
Confidence 3457778899999999865 36788889999999998865421 12 467777777766
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
+....-..- ..+|.- +..+. + .|
T Consensus 114 t~~l~~~~l--------------~~~Gi~-----------v~~vd-~-------------------------~d------ 136 (395)
T PRK08114 114 TQDFCSKIL--------------SKLGVT-----------TTWFD-P-------------------------LI------ 136 (395)
T ss_pred HHHHHHHHH--------------HhcCcE-----------EEEEC-C-------------------------CC------
Confidence 532221100 000000 00000 0 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC--CeEEEecccccccccCCcchhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g--ilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+. .+...|++|.+ .+..|.+++ +++|.++|+++| +++|+|.+++ . |.. ++
T Consensus 137 --~~~l~~~l~--------~~TrlV~~Etp-sNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a-~---p~~--~~ 195 (395)
T PRK08114 137 --GADIAKLIQ--------PNTKVVFLESP-GSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA-A---GVL--FK 195 (395)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc-c---ccc--cC
Confidence 133455553 24678999997 888888887 999999999985 9999999984 2 222 44
Q ss_pred hcCCCCcEEEe--ccccCCC-CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 677 LLGCVPDIACY--GKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 677 ~~gv~PDivt~--sKgLggG-~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
-...-.|+++. .|.|+|. =.-.|+++.++++.+.+.... ...|. ..+|..|.-.+-.|+-|. -..++-.
T Consensus 196 pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~----~~~G~--~~~p~~a~l~~rgl~TL~--lR~~~~~ 267 (395)
T PRK08114 196 ALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS----YLMGQ--MVDADTAYMTSRGLRTLG--VRLRQHE 267 (395)
T ss_pred HHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH----HhccC--CCCHHHHHHHHcCCCcHH--HHHHHHH
Confidence 44445899976 5988763 123555667777666554210 01121 345666655444444321 0123444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
+++..+.+ .+++||.|..| .|.|.|+.+++..
T Consensus 268 ~na~~va~--------~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 268 ESSLKVAE--------WLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred HHHHHHHH--------HHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 44444443 45566665433 3678899999964
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-05 Score=88.49 Aligned_cols=210 Identities=9% Similarity=-0.005 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC-----eEEEecccccccccCC-----
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGV----- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi-----lLI~DEV~TGfGRtG~----- 671 (863)
+.|++.+++ ......+|++--. ..+.|.+-| +++|.++|++||+ +|.+|=++.|+ ..-.
T Consensus 149 ~~L~~~i~~-----~~~~~~lvv~tag-tt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~p~~~~~~ 217 (374)
T PLN03032 149 DDLERALAK-----NRDKPAILNVNIG-TTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MMPFVSRAP 217 (374)
T ss_pred HHHHHHHHH-----cCCCCEEEEEEec-CcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hhhccCCCc
Confidence 456666653 1223445555433 566787766 9999999999974 89999998553 2210
Q ss_pred cchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcChh
Q 002941 672 ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~~~ 747 (863)
.+.+ ....|.++++ |.++.- .+.|+++.+++..+.+......-. ..-.|..|+ ....++..++|..+-.++
T Consensus 218 ~~~~---~~~vDSis~s~HK~~g~P-~g~G~ll~r~~~~~~~~~~~~Yl~-~~d~ti~gSR~g~~~l~~w~~l~~~G~~g 292 (374)
T PLN03032 218 EVTF---RKPIGSVSVSGHKFLGCP-MPCGVALTRKKHVKALSQNVEYLN-SRDATIMGSRNGHAPLYLWYTLRRKGYRG 292 (374)
T ss_pred ccCC---CcCCcEEEECcccccCCC-cCeEEEEEEchhhHhhccCCcccC-CCCCcccCCCchHHHHHHHHHHHHhCHHH
Confidence 1111 1247888886 765545 678889999887776543221100 011234443 345666777777775555
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
+.+.+.+ .-.+.+++.+.+. +.+...-.... ...+-|..+. .. ...+|..+.+.++.++
T Consensus 293 ~~~~~~~-~~~~a~~l~~~l~----~~~~~~~~~p~--~~~V~f~~~~---------~~-----~~~~~w~l~~~~~~~h 351 (374)
T PLN03032 293 IKRDVQH-CMRNAHYLKDRLT----EAGLTCRLNEL--SSTVVFERPM---------DE-----AFIKKWQLACEGDIAH 351 (374)
T ss_pred HHHHHHH-HHHHHHHHHHHHH----hCCCcEEECCC--ceEEEEcCCC---------cH-----hHhheeeecccCCEEE
Confidence 4333322 2223333322322 22221111111 2223344331 11 1225665655556666
Q ss_pred EecCCCCcHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.....++.+.+|++++-|.+
T Consensus 352 i~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 352 VVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EEECCCCCHHHHHHHHHHHhc
Confidence 666666788999999887754
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-05 Score=88.78 Aligned_cols=227 Identities=11% Similarity=0.003 Sum_probs=125.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc------CCeEEEecccccccc---cCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGV- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~------gilLI~DEV~TGfGR---tG~- 671 (863)
+.|++.+++ ++..|++-=+ ..+.|.+-| +++|.++|++| |+++.+|=+|.|+-. .++
T Consensus 177 ~~L~~~i~~--------~t~lV~~t~g-~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~ 243 (431)
T TIGR01788 177 EQVVEAVDE--------NTIGVVCILG-TTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL 243 (431)
T ss_pred HHHHHHHhh--------CCeEEEEEeC-CCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc
Confidence 456666642 2345555554 677888888 99999999999 999999999976421 222
Q ss_pred cchhhhcCCCCcEEEec--cccCCCCCCceeeeccHH--HHHhhhcCCccce-eecccCCCcc-H-HHHHHHHHHHHHhc
Q 002941 672 ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA--VFDSFVGDSKLKA-LLHGHSYSAH-A-LGCAAAAKSIKWFK 744 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~--i~~~l~~~~~~~~-~~~~~T~~~~-p-la~AAalAaL~~l~ 744 (863)
.+-+. ....|.++++ |.+.|- ...|+++.+++ +.+.+.....+-. -....|..+. + ...++..++|..+-
T Consensus 244 ~~~~~--~~~~DSis~s~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG 320 (431)
T TIGR01788 244 EWDFR--LPRVKSINVSGHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLG 320 (431)
T ss_pred hhhcC--CCCceEEEECchhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhc
Confidence 11111 1246889886 765444 56778887754 3343321110000 0000122222 1 12333455555554
Q ss_pred ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE--
Q 002941 745 DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-- 820 (863)
Q Consensus 745 ~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-- 820 (863)
..++ +++.+....+.+++.+ .+++.|.+.-+. ..-.++.+.+.... . ......++.+.|.++|+.+.
T Consensus 321 ~~G~-~~i~~~~~~la~~l~~----~L~~~~~~el~~~~~~~~iV~Fr~~~~~-~---~~~~~~~l~~~L~~~G~~~~~~ 391 (431)
T TIGR01788 321 REGY-RKIMQNSLDVARYLAE----EIAKLGPFEIISDGSGIPLVAFKLKDDA-D---PGYTLYDLSHRLRERGWIVPAY 391 (431)
T ss_pred HHHH-HHHHHHHHHHHHHHHH----HHHhCCCEEEeeCCCCceEEEEEeCCCC-C---CCcCHHHHHHHHHHCCCcccCC
Confidence 3333 3333444444444433 344455332221 13445566665321 0 01124568889999998642
Q ss_pred --ec---C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 821 --PL---G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 821 --p~---g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|. | -.+|+..-..++++.++.+++.|.+++..+
T Consensus 392 ~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 392 TLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 21 2 356666555678899999999999888765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=98.56 Aligned_cols=236 Identities=11% Similarity=-0.005 Sum_probs=133.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++-...|+++|+.+-+. +..++++||.+|+..++...++ +| ..||+.+..|.++
T Consensus 61 ~gnPt~~~Le~~la~le~~---~~~v~~sSG~aAi~~~l~all~---------~G------------D~Vlv~~~~Y~~~ 116 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGS---AGTILVPSGLAAVTVPFLGFLS---------PG------------DHALIVDSVYYPT 116 (395)
T ss_pred CCChHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhcC---------CC------------CEEEEccCCcHHH
Confidence 4577788899999987542 3566777899999988854421 23 5788888888875
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
......... . .+.- +..+.. .+
T Consensus 117 ~~l~~~~l~--~------------~Gi~-----------v~~vd~--------------------------~~------- 138 (395)
T PRK05967 117 RHFCDTMLK--R------------LGVE-----------VEYYDP--------------------------EI------- 138 (395)
T ss_pred HHHHHHHHH--h------------cCeE-----------EEEeCC--------------------------CC-------
Confidence 422111100 0 0000 000000 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. ++..+|++|.. .+..+ ...-+++|.++|+++|+++|+|+++... ..+.-+.
T Consensus 139 -~e~l~~al~--------~~TklV~lesP-sNP~l----~v~dl~~I~~la~~~g~~vvVD~t~a~p------~~~~pl~ 198 (395)
T PRK05967 139 -GAGIAKLMR--------PNTKVVHTEAP-GSNTF----EMQDIPAIAEAAHRHGAIVMMDNTWATP------LYFRPLD 198 (395)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHhCCEEEEECCccCc------eecChhH
Confidence 123445443 24568999964 56544 3344999999999999999999998532 1222233
Q ss_pred CCCcEEE--eccccCC-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt--~sKgLgg-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
.-.|+++ ..|.++| |=.-.|+++.+++..+.+.... ...| -..+|..|...+-.|+-|.- ..++-.+++
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~----~~~G--~~~~p~da~l~~rgl~Tl~l--R~~~~~~na 270 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH----GTLG--LCAGPDDTYQILRGLRTMGI--RLEHHRKSA 270 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHH----HHcC--CCCCHHHHHHHHcCcccHHH--HHHHHHHHH
Confidence 3478875 5798876 2134566777777655543210 0111 22466665555544443310 123334444
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
..+.+ .+++||.|..| .|.|.|+.+++..
T Consensus 271 ~~lA~--------~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK05967 271 LEIAR--------WLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAA 317 (395)
T ss_pred HHHHH--------HHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 44433 34555554322 3678899999963
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-06 Score=98.06 Aligned_cols=152 Identities=15% Similarity=0.063 Sum_probs=97.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++...+|+++|+++.+. +.++|++||++|+..++...++ .| ..||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~av~~sSGt~Al~~al~~ll~---------~G------------d~Vi~~~~~y~~t 116 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGG---VGAIATASGQAALHLAIATLMG---------AG------------SHIVASSALYGGS 116 (433)
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEeCCccHHH
Confidence 4567889999999999874 4589999999999999875521 12 4688888888764
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
.......- . .++ +....++ ..|
T Consensus 117 ~~~~~~~l--~------------~~G-------------i~v~~vd------------------------~~d------- 138 (433)
T PRK08134 117 HNLLHYTL--R------------RFG-------------IETTFVK------------------------PGD------- 138 (433)
T ss_pred HHHHHHHH--h------------hCC-------------eEEEEEC------------------------CCC-------
Confidence 22111000 0 000 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. .++.+|++|-+ .+..|.+.+ +++|.++|++||+++|+|.+|. .|..- .-..
T Consensus 139 -~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~~~~~-----~pl~ 198 (433)
T PRK08134 139 -IDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-TPYLL-----RPFE 198 (433)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CcccCcccC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Cchh
Confidence 234555553 24567888886 778887777 9999999999999999999984 22221 1123
Q ss_pred CCCcEEEec--cccCC
Q 002941 680 CVPDIACYG--KLLTG 693 (863)
Q Consensus 680 v~PDivt~s--KgLgg 693 (863)
.-.|++++| |.++|
T Consensus 199 ~GaD~vv~S~tK~l~g 214 (433)
T PRK08134 199 HGADLVYHSATKFLGG 214 (433)
T ss_pred cCCCEEEeccccccCC
Confidence 456888774 87764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-05 Score=87.60 Aligned_cols=213 Identities=9% Similarity=0.008 Sum_probs=126.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC---CeEEEecccccccccCC-----cc
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK---IPVIFDEVFTGFWRLGV-----ET 673 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g---ilLI~DEV~TGfGRtG~-----~~ 673 (863)
+.|++.+++ ....+..|++--+ ..+.|.+-| +++|.++|++|| +++.+|=+|.|+ ..-. .+
T Consensus 148 ~~L~~~i~~-----~~~~t~lvv~t~g-tt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~ 216 (380)
T PRK02769 148 DDLISKIKE-----NKNQPPIIFANIG-TTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPPPF 216 (380)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccccC
Confidence 456666653 1223455555554 677888887 999999999998 699999999664 3310 12
Q ss_pred hhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCcc--HHHHHHHHHHHHHhcChhhH
Q 002941 674 TADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 674 a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~--pla~AAalAaL~~l~~~~l~ 749 (863)
.+.. ..|.++++ |-+++- .+.|+++.+++..+.+........ ..-.|+.|+ ..+.++..++|+.+...++
T Consensus 217 d~~~---~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~~~~~~yl~-~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~- 290 (380)
T PRK02769 217 SFAD---GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERISVDVDYIG-SRDQTISGSRNGHTALLLWAAIRSLGSKGL- 290 (380)
T ss_pred CccC---CCCEEEECCcccCCCC-CCcEEEEEehhhhhhcccCccccC-CCCCCccCCCCcHHHHHHHHHHHHHCHHHH-
Confidence 2211 57999886 766655 688999999887776542211000 011233443 3567777888888765553
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++..+....+.+++.+++.+ .+ +.-+. .-....+-|..+. ..+ .+|..+.+.++.+++.
T Consensus 291 ~~~~~~~~~la~~l~~~L~~----~g-~~~~~-~p~~~~v~f~~~~----------~~~-----~~~w~l~~~~~~~hi~ 349 (380)
T PRK02769 291 RQRVQHCLDMAQYAVDRLQA----NG-IPAWR-NPNSITVVFPCPS----------ERI-----WKKWHLATSGNQAHII 349 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CC-CEEEc-CCCceEEEEcCCC----------HHH-----HhCeeEcccCCEEEEE
Confidence 33344444555555444322 21 11111 1112233343321 112 1676666666677777
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
..+.++.|.||.+++-|...+..
T Consensus 350 ~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 350 TMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred ECCCCCHHHHHHHHHHHHHHHhc
Confidence 77788999999999888777653
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-06 Score=95.75 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=96.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+|+++|+++.+. ..++.++||..|+..++...++ .| ..||+....|.|..
T Consensus 59 ~nPtv~~lE~~la~leg~---~~av~~~SG~aAi~~al~all~---------~G------------D~VI~~~~~Y~~T~ 114 (432)
T PRK06702 59 GNPTLAAFEQKLAELEGG---VGAVATASGQAAIMLAVLNICS---------SG------------DHLLCSSTVYGGTF 114 (432)
T ss_pred CCcHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhcC---------CC------------CEEEECCCchHHHH
Confidence 367789999999999874 4688899999999999975521 22 57999988887753
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
...-..- . .+|. . +..+. ...|
T Consensus 115 ~~~~~~l--~------------~~Gi--~---------v~~vd-------------------------~~~d-------- 136 (432)
T PRK06702 115 NLFGVSL--R------------KLGI--D---------VTFFN-------------------------PNLT-------- 136 (432)
T ss_pred HHHHHHH--H------------HCCC--E---------EEEEC-------------------------CCCC--------
Confidence 3211100 0 0000 0 00000 0001
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+. ++..+|++|.. .+..+.++. +++|.++|++||+++|+|+++. ....++-+..
T Consensus 137 ~~~l~~~I~--------~~Tk~I~~e~p-gnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~ 197 (432)
T PRK06702 137 ADEIVALAN--------DKTKLVYAESL-GNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEH 197 (432)
T ss_pred HHHHHHhCC--------cCCeEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhc
Confidence 133555553 24567888875 566665554 9999999999999999999972 3444554444
Q ss_pred CCcEEE--eccccCC
Q 002941 681 VPDIAC--YGKLLTG 693 (863)
Q Consensus 681 ~PDivt--~sKgLgg 693 (863)
-.||++ ++|-++|
T Consensus 198 GADIvv~S~TKy~~G 212 (432)
T PRK06702 198 GANIIVHSTTKYIDG 212 (432)
T ss_pred CCCEEEEccccccCC
Confidence 578875 5797765
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-06 Score=95.67 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=84.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCC-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV- 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~- 695 (863)
++.+|++|-. .+..|.... +++|.++|+++|+++|+||++.. +..+.. .....|+++ ++|.++|.-
T Consensus 134 ~tklV~le~P-~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 134 NTKAIYVETP-TNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQSP-----ISLGADIVLHSATKYLGGHSD 202 (377)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCCh-----hhhCCeEEEecCcccccCCcc
Confidence 4567777754 677776654 99999999999999999999842 122222 223458875 579997520
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
.-.|++++ ++++++.+.... ....-..+|..+..++..++.+.. ..++..++...+.++ ++++
T Consensus 203 ~~~G~~v~~~~~l~~~~~~~~------~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~--------L~~~ 266 (377)
T PRK07671 203 VVAGLVVVNSPELAEDLHFVQ------NSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEF--------LNNH 266 (377)
T ss_pred ceeEEEEeCcHHHHHHHHHHH------HhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHH--------HHcC
Confidence 11233444 567776654210 111123456666655555444321 234444555555543 3344
Q ss_pred CCeeE------------------ecccceEEEEEEc
Q 002941 775 RTVQR------------------VVALGTLCAIELQ 792 (863)
Q Consensus 775 p~v~~------------------vrg~Gl~~~iel~ 792 (863)
|.|.. ..|.|.++.+++.
T Consensus 267 ~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~ 302 (377)
T PRK07671 267 PAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG 302 (377)
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC
Confidence 43322 2467889999993
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.6e-05 Score=82.48 Aligned_cols=213 Identities=15% Similarity=0.161 Sum_probs=128.9
Q ss_pred CcEE-EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cch--hhhc---CCCCcEE----E
Q 002941 618 GCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETT--ADLL---GCVPDIA----C 686 (863)
Q Consensus 618 ~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a--~e~~---gv~PDiv----t 686 (863)
.+|. .+|+.| ++.=|... +++-|..|..++.++++.||+|||+.|- ..++ .|- .+.. ...||.+ .
T Consensus 225 ~kVkGvlitNP--sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~s-VF~~~~F~Sv~ev~~~~~~~~~rvHivys 300 (471)
T KOG0256|consen 225 LKVKGVLITNP--SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGS-VFDKSEFRSVLEVRKDPHLDPDRVHIVYS 300 (471)
T ss_pred CceeEEEEeCC--CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhccc-ccCccCceEHHHHhhccccCCCcEEEEEE
Confidence 3454 566778 78888665 6777999999999999999999999865 3333 111 1111 1256643 6
Q ss_pred eccccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChhhH-HhHHHHHHHHHHH
Q 002941 687 YGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQTN-HNIIPERRILREL 762 (863)
Q Consensus 687 ~sKgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~l~-~~l~~~~~~l~~~ 762 (863)
+||-+| -| +..|++.. ++++..+...- +.|+ .++....-... +|.++++. .-++++-++++.+
T Consensus 301 lSKD~GlpG-fRvGviYS~ne~VvsaA~km---------ssf~~vSs~tQ~~la~---LLSD~~f~~~yl~en~~Rl~~r 367 (471)
T KOG0256|consen 301 LSKDFGLPG-FRVGVIYSNNEDVVSAATKM---------SSFGLVSSQTQYLLAS---LLSDEEFTREYLRENNKRLRIR 367 (471)
T ss_pred eccccCCCc-eEEEEEEecChHHHHHHHHH---------hhccCCcHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHH
Confidence 799776 45 79999876 56676665431 1222 22333222222 23344433 3345555555543
Q ss_pred HHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEecC-------CEEEEecCCCC
Q 002941 763 WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLG-------NVIYLMCGPCS 834 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~g-------~~lr~~ppl~~ 834 (863)
-+ .+.+-+++.++.---++.|+++.+++..--.+..+. ....++..+.++ +|.+.|+. +.+|+. =+.+
T Consensus 368 h~-~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe--~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvc-FAn~ 443 (471)
T KOG0256|consen 368 HR-YIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFE--GELELWERILDNVKLNLSPGSSCHCHEPGWFRVC-FANM 443 (471)
T ss_pred HH-HHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChH--HHHHHHHHHHHhhccccCCCCcceecCCCeEEEE-eccC
Confidence 22 223334443332234688999999998643222232 245678888877 99998853 566654 3356
Q ss_pred cHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~ 851 (863)
.++.++-++++|...+.
T Consensus 444 ~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 444 SEETLEVAMRRLKQFLD 460 (471)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 77777778999988876
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-05 Score=89.39 Aligned_cols=216 Identities=13% Similarity=0.017 Sum_probs=116.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEec--cccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACYG--KLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~s--KgLggG~ 695 (863)
.+.+|+.-.. ....|.+-| +++|.++|++||+.|.+|=++.|....-.-+-...-|+ ..|.++++ |.+.+-
T Consensus 265 ~~~~vvataG-tt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P- 338 (522)
T TIGR03799 265 KPLAIVGVAG-TTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP- 338 (522)
T ss_pred CcEEEEEEec-CcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-
Confidence 4455554332 335677777 99999999999999999999865421111011112355 68999996 888766
Q ss_pred CCceeeecc-HHHHHhhhcCCccc----e-eecccCCCcc-HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLAT-NAVFDSFVGDSKLK----A-LLHGHSYSAH-ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (863)
Q Consensus 696 ~Pigav~~~-~~i~~~l~~~~~~~----~-~~~~~T~~~~-pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~ 768 (863)
+..|+++.+ ++..+.+.....+- . -....++.+. +.......++|+.+...++ +.+.+..-.+.+++.+
T Consensus 339 ~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~-~~ii~~~~~la~~l~~--- 414 (522)
T TIGR03799 339 MGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGY-ELLIDQSIEKAKYFAD--- 414 (522)
T ss_pred cccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH---
Confidence 677888876 45555544321100 0 0001122222 2222246677887755553 4455555555555433
Q ss_pred HHHhcCCCeeEec-ccceEEEEEEccCCcCC--------------CCchHHHHHHHHHHHHCCcEEEe-c--------C-
Q 002941 769 QQISSHRTVQRVV-ALGTLCAIELQAAGCNA--------------GYGSLYAASLLKKLREDGVYMRP-L--------G- 823 (863)
Q Consensus 769 ~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~--------------~~~~~~~~~l~~~l~e~GV~~~p-~--------g- 823 (863)
.+.+.|.+.-+. ..=.++.+.+....... .........+.+++.+.|..... . |
T Consensus 415 -~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~ 493 (522)
T TIGR03799 415 -LIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQ 493 (522)
T ss_pred -HHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCC
Confidence 344555432221 11224444443321100 00122445677788888876542 1 1
Q ss_pred --CEEEEec-CCCCcHHHHHHHHHH
Q 002941 824 --NVIYLMC-GPCSSPEVCSQLLLK 845 (863)
Q Consensus 824 --~~lr~~p-pl~~t~eeid~~v~~ 845 (863)
..+|+.. ++.+|+++|+.+++.
T Consensus 494 ~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 494 PTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred CcEEEEEEecCCCCCHHHHHHHHHH
Confidence 2466543 556899999987653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-05 Score=89.05 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=124.3
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGV 695 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~ 695 (863)
.-|+.+..|.. .|+..+ ++++.+++++|+|=|++ +|- ...-.+.+ |++++| |.+|
T Consensus 132 ~~v~~th~ETs----tGv~~~---------~l~~~~~~l~iVDavss-~g~--~~id~~~~----d~~~~ssqK~lg--- 188 (349)
T TIGR01364 132 AYVHYCANETI----HGVEFR---------ELPDVKNAPLVADMSSN-ILS--RPIDVSKF----GLIYAGAQKNIG--- 188 (349)
T ss_pred CEEEEcCCCCc----ccEecc---------eecccCCCeEEEEcccc-ccC--ccCCHHHc----cEEEEecccccC---
Confidence 34555566664 566543 67888999999999985 432 22223333 477665 9884
Q ss_pred CC-ceeeeccHHHHHhhhcCCc-cce----eecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 002941 696 IP-LAATLATNAVFDSFVGDSK-LKA----LLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (863)
Q Consensus 696 ~P-igav~~~~~i~~~l~~~~~-~~~----~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~ 768 (863)
-| +|.+.++++..+.+..... ... .....++ +.|-..+.+..++|+++.+++-.+++.++.+.+.+.+.+.
T Consensus 189 P~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~-- 266 (349)
T TIGR01364 189 PAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDT-- 266 (349)
T ss_pred CCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--
Confidence 34 8889999999887644211 000 0012233 4455677777889999876522567777777777766544
Q ss_pred HHHhcCCCe-eE-e--ccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHH
Q 002941 769 QQISSHRTV-QR-V--VAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 769 ~~~~~~p~v-~~-v--rg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid 840 (863)
+++.+.+ .. . ..+ ..++++.+... .....+...+.++|+...+.. +.+|+++-..+|+||||
T Consensus 267 --l~~~~gl~~~~~~~~~rs~~v~sf~~~~~--------~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid 336 (349)
T TIGR01364 267 --IDNSNGFYRNPVDPRNRSRMNVVFTLGNE--------ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQ 336 (349)
T ss_pred --HHhCCCeeccCCCHHHcCCeEEEEecCCh--------hHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHH
Confidence 3444321 11 1 112 24566655432 123566678889999555442 68999988889999999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
.++++|++.++
T Consensus 337 ~l~~al~~~~~ 347 (349)
T TIGR01364 337 ALVDFMKEFQK 347 (349)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-05 Score=85.61 Aligned_cols=309 Identities=17% Similarity=0.144 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
.+..+++.+.+....... -+...++++++++.+|. ..+..++||+.|.+.||+.. - -| .|
T Consensus 15 ~~e~~~v~~vl~sg~i~~-----G~~v~~FE~~~ae~~G~---k~ava~~sgT~AL~laL~al-~-----ig--~G---- 74 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-----GPFVRRFEQAFAEYLGV---KYAVAVSSGTAALHLALLAL-A-----IG--PG---- 74 (374)
T ss_pred hHHHHHHHHHHHcCCeec-----ChHHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHhc-C-----CC--CC----
Confidence 345566666666543321 35678999999999984 68999999999999999965 1 12 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
..||+-.-+|=.+.-..+..+..+.| .|. -|+.+
T Consensus 75 --------DeVI~ps~TfvATan~i~~~Ga~PVF---------------vDi-------------d~~T~---------- 108 (374)
T COG0399 75 --------DEVIVPSFTFVATANAVLLVGAKPVF---------------VDI-------------DPDTL---------- 108 (374)
T ss_pred --------CEEEecCCchHHHHHHHHHcCCeEEE---------------Eec-------------CCccc----------
Confidence 57888776665543333333222211 110 01100
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
+ -| .+.+|+.+.. ..-|.|.+.- . |..+. ++.+++||++||+.+|
T Consensus 109 ---------n--id--------~~~ie~aIt~-------~tKAIipVhl--~---G~~~d----m~~i~~la~~~~l~vI 153 (374)
T COG0399 109 ---------N--ID--------PDLIEAAITP-------RTKAIIPVHL--A---GQPCD----MDAIMALAKRHGLPVI 153 (374)
T ss_pred ---------C--CC--------HHHHHHHccc-------CCeEEEEehh--c---cCCCC----HHHHHHHHHHcCCeEE
Confidence 0 01 2456676642 2334444444 2 43343 8999999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeec-cHHHHHhhh---cCCc-------cceeecc
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLA-TNAVFDSFV---GDSK-------LKALLHG 723 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~-~~~i~~~l~---~~~~-------~~~~~~~ 723 (863)
-|=+| ++|-+ +--...|-.-|+.+|| |.|+.| =-|++++ ++++++.++ ..+. ......|
T Consensus 154 EDaAq-a~Ga~---y~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 154 EDAAQ-AHGAT---YKGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred EEcch-hccCe---ecCcccccccceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc
Confidence 99999 46432 2233445556888775 888743 2345666 466666543 2221 1223355
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEecccc-----eEEEEEEccCCcC
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVALG-----TLCAIELQAAGCN 797 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg~G-----l~~~iel~~~~~~ 797 (863)
+.|..+-+.+|.+++-|+.+++ +.++-+++.+...+ .+++.+ ........+ -++.+.+...
T Consensus 228 ~N~rm~~iqAAigl~QL~~l~~--~~~~R~~~a~~Y~~--------~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~--- 294 (374)
T COG0399 228 YNYRLTEIQAAIGLAQLERLDE--INERRREIAQIYAE--------ALKGLPGITLPPEPDGAVHAWHLYTILVDEE--- 294 (374)
T ss_pred cccCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HhhcCCCccccCCCCCceeeeeeeEEEecCC---
Confidence 6666778888888888887643 22332333333332 233332 111111112 1222333321
Q ss_pred CCCchHHHHHHHHHHHHCCcE----EEec--------------C----------CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 798 AGYGSLYAASLLKKLREDGVY----MRPL--------------G----------NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~----~~p~--------------g----------~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
......+...|.++||. .+|. + ..+.+-..+.++++++++++++|.++
T Consensus 295 ----~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~ 370 (374)
T COG0399 295 ----GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEV 370 (374)
T ss_pred ----CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 01245678888888554 3331 1 34444333457999999999999988
Q ss_pred HH
Q 002941 850 LE 851 (863)
Q Consensus 850 l~ 851 (863)
+.
T Consensus 371 ~~ 372 (374)
T COG0399 371 LG 372 (374)
T ss_pred hc
Confidence 75
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-06 Score=87.82 Aligned_cols=77 Identities=19% Similarity=0.117 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.+.++.++| |++||++. |+.......-+++..+ .+|+|+.....+++.+..+++.+
T Consensus 115 ~~l~~~l~~l~~~y-------------D~ViiD~p-----p~~~~~~~~~~~~~~D-~vilV~~~~~~~~~~~~~~~~~l 175 (204)
T TIGR01007 115 SNFKTLIETLRKYF-------------DYIIIDTP-----PIGTVTDAAIIARACD-ASILVTDAGEIKKRDVQKAKEQL 175 (204)
T ss_pred HHHHHHHHHHHhcC-------------CEEEEeCC-----CccccchHHHHHHhCC-eEEEEEECCCCCHHHHHHHHHHH
Confidence 44555666666665 99999995 3322222333444444 78899999999999999999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
+..|.++.|+|+|++.
T Consensus 176 ~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 176 EQTGSNFLGVVLNKVD 191 (204)
T ss_pred HhCCCCEEEEEEeCcc
Confidence 9999999999999873
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.8e-05 Score=85.86 Aligned_cols=232 Identities=14% Similarity=0.044 Sum_probs=127.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh----hh
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA----DL 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~----e~ 677 (863)
+.+++.+.. .+...++.|.+|-. .+.+|-.+.+...+++++++|++||+.||.|=++. ||- + +|-- .+
T Consensus 157 ~~Le~aI~~----~~~~~~~lV~~e~t-~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A-~~I~~re~g~ 228 (450)
T TIGR02618 157 KKLQKLIDE----VGADKIPYICLAVT-VNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VEN-A-YFIKEREQGY 228 (450)
T ss_pred HHHHHHhcc----ccCcccCceEEEEe-cccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-h-hhhhcccccc
Confidence 456666642 22334555556544 34443466788899999999999999999998874 310 0 1100 01
Q ss_pred cC-----------CCCcEEEeccccCCCCCCceeeec--cHHHHHhhhcCCccceeecccCCCccHH-HHHHHHHHHHHh
Q 002941 678 LG-----------CVPDIACYGKLLTGGVIPLAATLA--TNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKWF 743 (863)
Q Consensus 678 ~g-----------v~PDivt~sKgLggG~~Pigav~~--~~~i~~~l~~~~~~~~~~~~~T~~~~pl-a~AAalAaL~~l 743 (863)
.+ -..|. |++|+.-.+..|+|.+++ ++++++..+.... .+...-||++=.. .++|..-+|+..
T Consensus 229 ~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~--~~eG~~tyGgla~r~~~ala~gL~e~ 305 (450)
T TIGR02618 229 EDKSIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVV--VFEGMPSYGGLAGRDMEAMAIGIREA 305 (450)
T ss_pred cCCCHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhh--hcCCccccCchhhhhHHHHHHHHHHh
Confidence 11 13466 555666333368777776 7788777654211 1112235555222 333333345544
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCchHHHHHHHHHHH-HCCcEE
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGSLYAASLLKKLR-EDGVYM 819 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~~~~~~l~~~l~-e~GV~~ 819 (863)
.+..+.++-..++++|.+.|.+. ..|.+. ...|.++.++...-- ....| -+..++.+|+ +-||-.
T Consensus 306 ~~~~y~~~r~~~a~~La~~L~~~------Gvpv~~--p~ggh~V~vda~~~lph~~~~~~---p~~al~~~ly~~~gir~ 374 (450)
T TIGR02618 306 VDYEYIEHRVKQVRYLGDKLKAA------GVPIVE--PVGGHAVFLDARRFLPHIPQDQF---PAQSLAASIYVETGVRS 374 (450)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHC------CCcccC--CCCcceEEEEhHHhCCCCChhhC---hHHHHHHHHHHHhCccE
Confidence 34455555566677777644221 334433 234566667665421 11122 2344555554 445433
Q ss_pred E----------ecC--------CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHHH
Q 002941 820 R----------PLG--------NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 820 ~----------p~g--------~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~~ 855 (863)
. |.+ ..+|+..|-- -|.+++|.+.++|....++-+.
T Consensus 375 ~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 375 MERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred EeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 2 111 4567766664 4999999999999887765443
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.49 E-value=7e-05 Score=88.52 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=121.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
..+|+..-- ....|.+=| +++|.++|++||+.|.+|=++.|+...-..+-.-..|+ ..|-+++ =|.+.-. +
T Consensus 288 P~~VvaTaG-TT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~ 361 (539)
T PLN02590 288 PFFICATVG-TTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-Q 361 (539)
T ss_pred cEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-c
Confidence 344444332 333455544 99999999999999999999877743322111112355 5788887 4888776 6
Q ss_pred CceeeeccHH--HHHhhhcCCccc-----------eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 002941 697 PLAATLATNA--VFDSFVGDSKLK-----------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (863)
Q Consensus 697 Pigav~~~~~--i~~~l~~~~~~~-----------~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l 763 (863)
+.|+++++.. +.+.+......- .+....--.+-+........+|+.+=.+++.+.+.+.. .+.+++
T Consensus 362 ~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~-~lA~~~ 440 (539)
T PLN02590 362 TCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHV-NLAKHF 440 (539)
T ss_pred CEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8888888753 233332111000 00010111123445556667777664455544443332 333333
Q ss_pred HHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-ec---C-CEEEEec-CCCCcH
Q 002941 764 DLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PL---G-NVIYLMC-GPCSSP 836 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-p~---g-~~lr~~p-pl~~t~ 836 (863)
.+.+++.|.+.-+...- .++.+.+...............++.+++.+.|.+.. +. | ..+|+.. +..+++
T Consensus 441 ----~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~ 516 (539)
T PLN02590 441 ----EDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEE 516 (539)
T ss_pred ----HHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCH
Confidence 33445555432221111 233333332110111112356678888888886554 21 2 4556543 556899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
++|+.+++.|.+..+++.
T Consensus 517 ~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 517 KHVTEAWQIIQKHASKFT 534 (539)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999988876654
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.4e-06 Score=95.04 Aligned_cols=147 Identities=13% Similarity=0.176 Sum_probs=89.0
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCC-C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-G 694 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLgg-G 694 (863)
+++.+|++|-+ .+..+..++ +++|.++|+++| +++|-++. - .......+.-.|++++| |-++| |
T Consensus 147 ~~tklv~~e~~-snpt~~v~D----i~~I~~la~~~~--lvVD~t~~-s-----~~~~~pl~~gaDivv~S~tK~i~G~~ 213 (384)
T PRK06434 147 SNYDLIYAESI-TNPTLKVPD----IKNVSSFCHEND--VIVDATFA-S-----PYNQNPLDLGADVVIHSATKYISGHS 213 (384)
T ss_pred CCeeEEEEEcC-CCCCceeec----HHHHHHHHHHcC--eEEECCCC-C-----cccCCchhcCCCEEEeecccccCCCC
Confidence 45678899986 666665554 999999999998 46698862 2 22223344568999886 88865 2
Q ss_pred CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
=.=.|++++ ++++.+.+... ....-...+|..++.++.-|+.+. ...++-.+++..+. +.++.
T Consensus 214 d~~gG~vv~~~~~~~~~~~~~------~~~~G~~~~~~~A~l~~~gL~tL~--~R~~r~~~~a~~~a--------~~L~~ 277 (384)
T PRK06434 214 DVVMGVAGTNNKSIFNNLVER------RKTLGSNPDPIQAYLALRGLKTLG--LRMEKHNKNGMELA--------RFLRD 277 (384)
T ss_pred CceEEEEecCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCCCcHH--HHHHHHHHHHHHHH--------HHHHc
Confidence 122445555 45665554421 011223457887777766666542 12333344444443 44567
Q ss_pred CCCeeEe------------cccceEEEEEEcc
Q 002941 774 HRTVQRV------------VALGTLCAIELQA 793 (863)
Q Consensus 774 ~p~v~~v------------rg~Gl~~~iel~~ 793 (863)
||.|..| +|.|.|+.+++..
T Consensus 278 ~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 278 SKKISNVYYPDTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred CCCccEEECCChHHHHHhcCCCCceEEEEECC
Confidence 7766544 3678899999963
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-06 Score=95.14 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=52.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLgg-G~ 695 (863)
++.+|++|.+ .+..|.+.+ +++|.++|++||+++|+|++++.. . .++-.....|++ .++|.++| |
T Consensus 131 ~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~----~--~~~~~~~gaDivv~S~sK~~~g~g- 198 (397)
T PRK05939 131 NTRMVFVETI-ANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSP----W--LFRPKDVGASLVINSLSKYIAGHG- 198 (397)
T ss_pred CCeEEEEECC-CCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccc----c--ccCccccCCEEEEecCeecccCCC-
Confidence 4567888886 888887654 999999999999999999998421 1 122222346777 46899986 4
Q ss_pred CCceeeecc
Q 002941 696 IPLAATLAT 704 (863)
Q Consensus 696 ~Pigav~~~ 704 (863)
.-+|.++..
T Consensus 199 ~~igg~v~~ 207 (397)
T PRK05939 199 NALGGAVTD 207 (397)
T ss_pred CeEEEEEec
Confidence 566666553
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.1e-05 Score=84.28 Aligned_cols=232 Identities=11% Similarity=0.033 Sum_probs=123.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc---c-c------cccCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT---G-F------WRLGV 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T---G-f------GRtG~ 671 (863)
+.+++.++. .+++++..+.++-+ .+.+|-.+.|.+.+++++++|++||+.+++|=+-- . | +.+|.
T Consensus 170 ~~le~~I~~----~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~ 244 (467)
T TIGR02617 170 EGLERGIEE----VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNW 244 (467)
T ss_pred HHHHHHHhh----cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCC
Confidence 556666653 24467888888876 66666688899999999999999999999995421 0 0 11111
Q ss_pred c---chhhhcCCCCcEE--EeccccCCCCCCceeeec-cHH-HHHhhhcC-CccceeecccCCCccHHHHHHHHH-HHHH
Q 002941 672 E---TTADLLGCVPDIA--CYGKLLTGGVIPLAATLA-TNA-VFDSFVGD-SKLKALLHGHSYSAHALGCAAAAK-SIKW 742 (863)
Q Consensus 672 ~---~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~-~~~-i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalA-aL~~ 742 (863)
. .+-+.+ -..|.+ +++|+++ .|+|.+++ +++ +.+.+..- ...-.+...-||+|-.----.|+| .|+.
T Consensus 245 si~eI~rE~~-~~aDsvt~slsKglg---ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e 320 (467)
T TIGR02617 245 SIEQITRETY-KYADMLAMSAKKDAM---VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_pred CHHHHHHHhh-ccCCEEEEEcCCCCC---CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhh
Confidence 0 011111 235765 5689886 57776654 433 22333220 011122344577653221111222 3443
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC---CcCCCCchHHHHHHHHHHH-HCCcE
Q 002941 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA---GCNAGYGSLYAASLLKKLR-EDGVY 818 (863)
Q Consensus 743 l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~---~~~~~~~~~~~~~l~~~l~-e~GV~ 818 (863)
.-+++++..=....++|.+.|.+ ...|.+. +-|.+.+ |+...- -....|+ +..++.+|+ +-||-
T Consensus 321 ~~~~~yl~~ri~qv~yl~~~L~~------~Gvpi~~-~Gghav~--iDa~~~lphip~~~fp---a~al~~~ly~~~GiR 388 (467)
T TIGR02617 321 GMNLDWLAYRINQVQYLVNGLEE------IGVVCQQ-AGGHAAF--VDAGKLLPHIPADQFP---AHALACELYKVAGIR 388 (467)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh------CCCcEEe-cCccEEE--EehhhhCCCCChhhCc---HHHHHHHHHHHcCcc
Confidence 33455554444556666664422 2345554 4444433 332221 0111222 344455554 44443
Q ss_pred E-------E---ecC--------CEEEEecCCC-CcHHHHHHHHHHHHHHHHHHH
Q 002941 819 M-------R---PLG--------NVIYLMCGPC-SSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 819 ~-------~---p~g--------~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l~ 854 (863)
. . |.+ ..+|+..|-- -|.+++|.+.+++....++-+
T Consensus 389 ~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~ 443 (467)
T TIGR02617 389 AVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAP 443 (467)
T ss_pred eEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhh
Confidence 2 1 111 4667766664 499999999999988776543
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0001 Score=78.42 Aligned_cols=212 Identities=18% Similarity=0.171 Sum_probs=122.5
Q ss_pred CCcEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE-Ee--cc-cc
Q 002941 617 SGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA-CY--GK-LL 691 (863)
Q Consensus 617 ~~~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv-t~--sK-gL 691 (863)
.+++++|++. | -+..|.+ ..++-+.+|.+++++||++||+|.++ |.-.-|--|.--..--.++|+ |+ || ||
T Consensus 177 ~e~~g~ic~SRP--tNPTGNV-lTdeE~~kldalA~~~giPliIDnAY-g~PFP~iifsd~~~~w~~NiilC~SLSK~GL 252 (417)
T COG3977 177 GESTGAICVSRP--TNPTGNV-LTDEELAKLDALARQHGIPLIIDNAY-GVPFPGIIFSDATPLWNENIILCMSLSKLGL 252 (417)
T ss_pred ccccceEEecCC--CCCCCCc-ccHHHHHHHHHHhhhcCCcEEEeccc-CCCCCceecccccccCCCCEEEEeehhhcCC
Confidence 4678888876 5 4666744 47788999999999999999999998 442223222211111235654 44 67 66
Q ss_pred CCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH-HHHHHH---HH
Q 002941 692 TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL-RELWDL---EL 767 (863)
Q Consensus 692 ggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l-~~~l~~---~l 767 (863)
-| ...|.++++++++.++.+-.. ..-.+.+.| +.|.+.. .++..++..-..+..+-+ +.++.. .+
T Consensus 253 PG--~R~GIiIane~viqaitnmn~-iisLap~~~-----G~Aia~~---mie~gdl~rlseqVIrPFY~~~~q~~~~~l 321 (417)
T COG3977 253 PG--SRCGIIIANEKVIQAITNMNG-IISLAPGRM-----GPAIAAE---MIESGDLLRLSEQVIRPFYRNRVQTTIAIL 321 (417)
T ss_pred CC--cceeEEEccHHHHHHHHhccc-eeeecCCCc-----cHHHHHH---HhhcchHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55 688999999999999875211 001111111 2222222 222333221111111111 111111 11
Q ss_pred HHHHhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------CCEEEEecCC
Q 002941 768 IQQISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------GNVIYLMCGP 832 (863)
Q Consensus 768 ~~~~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------g~~lr~~ppl 832 (863)
.+.+.+.++. --++.|.++. +-|.+-. -....+.++|..+||++.|+ +.++|+ ++
T Consensus 322 ~~~lp~~~~~-iHkpEGAIFlWLWf~dLP-------Itt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rm--n~ 391 (417)
T COG3977 322 RRYLPEYRCL-IHKPEGAIFLWLWFKDLP-------ITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRM--NY 391 (417)
T ss_pred HHhcCcccee-eecCCcceeehhhhccCC-------CCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEE--ec
Confidence 2223334432 1256776555 4444322 23678999999999999873 267776 67
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l 853 (863)
+-+++.|+..+.+|.+.++++
T Consensus 392 ~~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 392 VPEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 788999999999998877654
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-05 Score=87.83 Aligned_cols=198 Identities=10% Similarity=0.031 Sum_probs=122.7
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGV 695 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~ 695 (863)
.-|+.+-.|.. .|+..++ ++++ ||+++|+|=|++ +| +...-.+.+ |++++| |.+|
T Consensus 143 ~~V~~th~eTs----tGv~~~~---i~~i------~g~l~vVDavss-~g--~~~idv~~~----d~~~~ssqK~lg--- 199 (360)
T PRK05355 143 AYVHYTSNETI----DGTEFHE---LPDT------GDVPLVADMSSD-IL--SRPIDVSKF----GLIYAGAQKNIG--- 199 (360)
T ss_pred CEEEEccCCCc----ceEecCc---cccc------CCCcEEEEcCcc-cc--CccCCHHHc----cEEEEecccccc---
Confidence 34555555653 5666532 3333 899999999985 43 222333333 577775 9884
Q ss_pred CC-ceeeeccHHHHHhhhcC-Ccc---ce-eecccC-CCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHH
Q 002941 696 IP-LAATLATNAVFDSFVGD-SKL---KA-LLHGHS-YSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 696 ~P-igav~~~~~i~~~l~~~-~~~---~~-~~~~~T-~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l 767 (863)
-| +|.+.++++..+.+... ... .. .....+ ++.|-..+.+..++|+++.++ + .+++.++.+.+.+.+.+.
T Consensus 200 P~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG-~e~i~~r~~~l~~~l~~~- 277 (360)
T PRK05355 200 PAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGG-VAAMEKRNQEKAALLYDA- 277 (360)
T ss_pred CCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHH-
Confidence 34 88899999998876541 100 00 001112 344566777788899998765 4 466677777777665444
Q ss_pred HHHHhcCCCeeEe----cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHH
Q 002941 768 IQQISSHRTVQRV----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 768 ~~~~~~~p~v~~v----rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid 840 (863)
+++.+.+... ...+..+.+.+... .....+...+.++|+++.+. .+.+|+++-..+|.||||
T Consensus 278 ---l~~~~~~~~~~~~~~rs~~v~sf~~~~~--------~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~ 346 (360)
T PRK05355 278 ---IDSSDFYRNPVAPEDRSRMNVPFTLADE--------ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQ 346 (360)
T ss_pred ---HHhCCCcccCCChhhcCCcEEEEEcCCh--------HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHH
Confidence 3344432110 11234566655432 12356667888999998543 267999988889999999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
.++++|++.+.
T Consensus 347 ~l~~~l~~~~~ 357 (360)
T PRK05355 347 ALVDFMKEFER 357 (360)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.5e-05 Score=79.51 Aligned_cols=201 Identities=17% Similarity=0.182 Sum_probs=123.1
Q ss_pred cEE-EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-C
Q 002941 619 CIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-G 693 (863)
Q Consensus 619 ~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-g 693 (863)
.+- .|++.| .+..|-..- .+-+.++-+.-+ +.++++||++-.| .|-+.......-.|+++ ||||+.| .
T Consensus 160 ~iK~~F~tSP--gNPtg~~ik-~~di~KiLe~p~--nglVVvDEAYidF--sg~~S~~~lV~kYpNLivlqTlSKsfGLA 232 (375)
T KOG0633|consen 160 KIKCIFLTSP--GNPTGSIIK-EDDILKILEMPD--NGLVVVDEAYIDF--SGVESRMKLVKKYPNLIVLQTLSKSFGLA 232 (375)
T ss_pred cceEEEEcCC--CCCCccccc-HHHHHHHHhCCC--CcEEEEeeeeEee--ccccccchHhHhCCceeehhhhhhhcCcc
Confidence 444 455567 577776664 344444545443 7899999999777 45444444444568877 6799877 5
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|....+.++++.+... -..|..+-++..+|+++|.-- ...-.+.++...-+=+. +|...+..
T Consensus 233 G-iRvG~~~~~~~ia~iln~~--------KaPYNiS~~~s~~AL~Als~~-n~kkme~~rdaiv~er~----RL~keLt~ 298 (375)
T KOG0633|consen 233 G-IRVGYGAFPLSIAEILNRA--------KAPYNISVAGSVAALAALSDS-NGKKMEDVRDAIVRERE----RLFKELTE 298 (375)
T ss_pred e-eEeecccccHHHHHHHHhc--------cCCccccchhHHHHHHhcCcc-cchHHHHHHHHHHHHHH----HHHHHhhc
Confidence 6 8999999999999988742 234555556666666666511 11112222222211122 34455666
Q ss_pred CCCeeEecc--cceEEEEEEccCCcCCCCchHHHHHH-HHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHH
Q 002941 774 HRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAASL-LKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 774 ~p~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~~~~l-~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~ 844 (863)
.|.+.+..| ...|+-+++...+ ...+..+ .+.+-..||.++..| +.+|++ .-|+|+-+.+++
T Consensus 299 v~~~~~~~gg~daNFiLi~v~~~~------n~~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~EentvL~k 369 (375)
T KOG0633|consen 299 VPFLNDYPGGSDANFILIEVTGGD------NGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEENTVLMK 369 (375)
T ss_pred CccccCCCCcccccEEEEEEcCCC------cHHHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCcccchHHHH
Confidence 666655433 3357777776432 1234444 444557899998654 678886 678888888888
Q ss_pred HHHHH
Q 002941 845 KLYQR 849 (863)
Q Consensus 845 ~L~~~ 849 (863)
.|++.
T Consensus 370 ~~K~~ 374 (375)
T KOG0633|consen 370 CLKQF 374 (375)
T ss_pred HHHhh
Confidence 88764
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.9e-05 Score=87.25 Aligned_cols=347 Identities=15% Similarity=0.077 Sum_probs=179.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCC--ChHHHHHH-HHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENV--YEPALECA-ELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~--~~~~~eLa-e~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
-|||..+ .|= .+|+|.+|+...+..+-. .....+. ...+.+.| +.++.+.+.+ -..+.|+++++|+|-
T Consensus 45 vyld~~a------t~p-~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd-~~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 45 VYLDNQA------TGP-MDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD-PSDIVFTSGATESNN 116 (428)
T ss_pred EEEecCc------CCC-CCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC-CCcEEEeCCchHHHH
Confidence 6888543 343 689999999987766432 2111122 22224444 4455566644 245999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++-.-+.+. .+ . ++.||.+... |.+...+.-..- ..+ +
T Consensus 117 lvl~~v~~~~~--~~----~----------~k~iitl~~e-H~~v~~s~~~l~--------------~~g--~------- 156 (428)
T KOG1549|consen 117 LVLKGVARFFG--DK----T----------KKHIITLQTE-HPCVLDSCRALQ--------------EEG--L------- 156 (428)
T ss_pred HHHHHhhcccc--cc----c----------cceEEEeccc-CcchhHHHHHHH--------------hcC--e-------
Confidence 99986633221 01 0 1356666554 444333222110 001 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
.+..+|+++.+ ..| .+.+++.++ .++.+|.+.-| .++-|+
T Consensus 157 --~Vt~lpv~~~~---------------------~~d--------~~~~~~~i~--------~~T~lv~I~~V-nn~~gv 196 (428)
T KOG1549|consen 157 --EVTYLPVEDSG---------------------LVD--------ISKLREAIR--------SKTRLVSIMHV-NNEIGV 196 (428)
T ss_pred --EEEEeccCccc---------------------ccc--------HHHHHHhcC--------CCceEEEEEec-ccCccc
Confidence 12234443211 001 234455553 36788999998 899999
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH----
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD---- 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~---- 709 (863)
..| +++|..+|+++|+.+++|-+| +.|.. -.+.-.+.+|.++++ |.+|- =++|+..++++.-.
T Consensus 197 ~~P----v~EI~~icr~~~v~v~~DaAQ-avG~i----~vDV~eln~D~~s~s~HK~ygp--~~iGaLYvr~~~~~~~~~ 265 (428)
T KOG1549|consen 197 LQP----VKEIVKICREEGVQVHVDAAQ-AVGKI----PVDVQELNADFLSISAHKIYGP--PGIGALYVRRKRPRLRVE 265 (428)
T ss_pred ccc----HHHHHHHhCcCCcEEEeehhh-hcCCc----cccHHHcCchheeeecccccCC--CcceEEEEccCCCccccc
Confidence 998 999999999999999999999 56432 223334578988876 88774 23888888862111
Q ss_pred -hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe------eEec
Q 002941 710 -SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTV------QRVV 781 (863)
Q Consensus 710 -~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v------~~vr 781 (863)
.+.++...+.+..+. .++..+..--++.+++.. ....+. ...++...+... .+...+.+ ..-.
T Consensus 266 p~~~GGgq~r~~rsGT---~~~~~~~~~gsA~e~~~~~~~~~~~---~~~~~~~~ll~~---i~~~~~~~~~~G~~~~~~ 336 (428)
T KOG1549|consen 266 PPLSGGGQERGLRSGT---VATPLAVGLGSAAEFVNKEMAYDEA---IIKRLSEKLLMG---IGQSLPEVTLNGSGKSRY 336 (428)
T ss_pred CcccCCccccccccCC---cCchhhhhhHHHHHHHHhhcchhHH---HHHHHHHHHHHH---HhhhCchhhccCCccccc
Confidence 111112222222221 223333334444555422 211111 112233322222 22222221 0111
Q ss_pred ccceEEEEEEccCC-----cC----CCCch-HHH-HHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 782 ALGTLCAIELQAAG-----CN----AGYGS-LYA-ASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 782 g~Gl~~~iel~~~~-----~~----~~~~~-~~~-~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.-...+++..+... .+ ..+.. ... .+....++..|+-.......+||..-.-++++|++.+++.+.+.+
T Consensus 337 ~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v 416 (428)
T KOG1549|consen 337 PGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLV 416 (428)
T ss_pred ccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHH
Confidence 11223333311110 00 00000 000 012234555666444445778888777789999999999998877
Q ss_pred HHHH
Q 002941 851 EEFD 854 (863)
Q Consensus 851 ~~l~ 854 (863)
+.+.
T Consensus 417 ~~~~ 420 (428)
T KOG1549|consen 417 SLLR 420 (428)
T ss_pred Hhcc
Confidence 6544
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-05 Score=80.76 Aligned_cols=308 Identities=14% Similarity=0.095 Sum_probs=172.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
..+|..++-+.|++++| .+.+-++++.-||-.+++-.. . + +...++.++.-|=+|
T Consensus 59 ~kPpI~~F~~dlaeFlg---~D~~R~t~GARe~KfavMhal-~----------~-----------~gd~vV~D~~aHYtt 113 (382)
T COG1103 59 TKPPIKDFLEDLAEFLG---MDEVRVTAGAREAKFAVMHAL-C----------K-----------EGDWVVVDSLAHYTT 113 (382)
T ss_pred cCCcHHHHHHHHHHHhC---CceeeecccchhhHHHHHHHh-c----------c-----------CCCEEEEcCcchHHH
Confidence 45788899999999998 578999998888876555432 1 1 256899999999887
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
.-+.-..|...+ ..|. -.+|... . + .+.|
T Consensus 114 yvAAEragl~v~----------------eVp~---------tg~Pey~--------------------i--~----~e~y 142 (382)
T COG1103 114 YVAAERAGLNVA----------------EVPN---------TGYPEYK--------------------I--T----PEGY 142 (382)
T ss_pred HHHHHhcCCeEE----------------ecCC---------CCCCceE--------------------e--c----HHHH
Confidence 766544331111 0111 0112110 0 0 1223
Q ss_pred HHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 601 SSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.-++ +++.++ |++.-| .|.-|.+.. -+++.++|+++|++|++.=++| .||.- ...-.
T Consensus 143 ~~viee~~~~-----~g~~~~lallTh~--Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp----vs~ke 206 (382)
T COG1103 143 AEVIEEVKDE-----GGDPPALALLTHV--DGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP----VSGKE 206 (382)
T ss_pred HHHHHHHHhc-----cCCCceEEEEecc--CCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc----ccccc
Confidence 3445544432 334455 555555 678786654 6889999999999999998886 66652 12223
Q ss_pred CCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC-cc----ceeecccCCCccHHHHHHHHHHHHHhcC--hhhHH
Q 002941 680 CVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS-KL----KALLHGHSYSAHALGCAAAAKSIKWFKD--PQTNH 750 (863)
Q Consensus 680 v~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~-~~----~~~~~~~T~~~~pla~AAalAaL~~l~~--~~l~~ 750 (863)
+.+|.++=| |+|+.. -|+|...++++..+.+...+ +. ..-+.+-|-.|-|+.. .+|++-...+ ..|-+
T Consensus 207 ~g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivT--lmASfP~V~eRVkrWde 283 (382)
T COG1103 207 IGADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVT--LMASFPHVVERVKRWDE 283 (382)
T ss_pred cCCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHH--HHhcCHHHHHHHHHHHH
Confidence 678988776 899877 69999999999998764322 10 1123455555655532 2222222211 11222
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHhcCCCeeEecccceEEEEEEccCC--cCCCCchHHHHHHHHHHHHCCcEEEecCCEEE
Q 002941 751 NIIPERRILRELWDLEL-IQQISSHRTVQRVVALGTLCAIELQAAG--CNAGYGSLYAASLLKKLREDGVYMRPLGNVIY 827 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l-~~~~~~~p~v~~vrg~Gl~~~iel~~~~--~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr 827 (863)
. .++.+++.+.+.+.. ...+...|. ..- ++.++...-. .+. .......+..+|.++||.-...|..-+
T Consensus 284 E-v~kaR~fv~elEkigg~~qlG~rPk-----~Hd-Lm~Fetp~f~eIakk--~~r~gyFlY~ELK~RgI~GI~~G~Tk~ 354 (382)
T COG1103 284 E-VEKARWFVAELEKIGGVKQLGERPK-----NHD-LMKFETPVFHEIAKK--HKRKGYFLYEELKKRGIHGIQPGQTKY 354 (382)
T ss_pred H-HHHHHHHHHHHHHhhhHHHhCCCCc-----ccc-eeeecCchHHHHHHh--CcCCceeeHHHHHhcCccccccCceeE
Confidence 2 233444444333211 111111111 111 2222221100 000 000122356778888887655553333
Q ss_pred Eec-CCCCcHHHHHHHHHHHHHHHHH
Q 002941 828 LMC-GPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 828 ~~p-pl~~t~eeid~~v~~L~~~l~~ 852 (863)
|.. -+-.+.|+++..++++++.+++
T Consensus 355 ~K~svyGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 355 FKLSVYGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred EEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 332 4568999999999999988764
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=85.56 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.+..+.+.| |++||++.+|+.. .+.......+ .||+|+.....++..++..++
T Consensus 94 ~~~~l~~~l~~l~~~y-------------D~VIiD~p~~~~~------~~~~~l~~ad-~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 94 DPDKLEDVLKEIIDDT-------------DFLLIDAPAGLER------DAVTALAAAD-ELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CHHHHHHHHHHHHhhC-------------CEEEEeCCCccCH------HHHHHHHhCC-eEEEEECCCCchHHHHHHHHH
Confidence 3456666676666665 9999999776531 2222222222 488999999889988888888
Q ss_pred HHHhCCCcEEEEEEcCCCCCC----HHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHGLVN----EVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~~~~----~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.++..+.++.++|+|++...+ ...+++. .++|+++ ||+.+..
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~--~~~~~l~~Ip~~~~~ 200 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETI--LEVPVLGVVPEDPEV 200 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHh--hCCcEEEEecCCHhH
Confidence 887778899999999985432 2344444 3789998 9887654
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=79.77 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=61.4
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhh-hcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-------
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYR-PFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~-~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~------- 292 (863)
+|++||.+..++. .....+++ ..---+|+|+....-++..+...++.+++.+.++.|+|+|+....
T Consensus 68 yD~VIiD~pp~~~------~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~ 141 (169)
T cd02037 68 LDYLVIDMPPGTG------DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKK 141 (169)
T ss_pred CCEEEEeCCCCCc------HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCc
Confidence 5999999966532 11223332 223457888888889999999999999999999999999987321
Q ss_pred ----CHHHHHHhhc-CCCCeee-cCCCC
Q 002941 293 ----NEVPLMSYLR-NRVPVLV-LPPLP 314 (863)
Q Consensus 293 ----~~~~~~~~~~-~~~pvl~-~p~~~ 314 (863)
....+++..+ -+.|+++ ||+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 142 IYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred ccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 1123333322 3799999 99864
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.2e-05 Score=90.65 Aligned_cols=216 Identities=15% Similarity=0.136 Sum_probs=115.2
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhc-----C-CCCc-EEEec--c
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLL-----G-CVPD-IACYG--K 689 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~-----g-v~PD-ivt~s--K 689 (863)
.++||+-|. -.|+..- ++.|.++|+++|++|++||+|.+.-+....+.- ... . .-|| ++|-| |
T Consensus 314 ~avvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHK 386 (755)
T PRK15029 314 SYCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHK 386 (755)
T ss_pred eEEEEECCC---CcceeeC----HHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhh
Confidence 377888885 3566655 899999999999999999999765555554431 111 1 3478 66666 7
Q ss_pred ccCCCCCCceeee-ccHH--HH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC---hhhHHhHHHHHHHHHH
Q 002941 690 LLTGGVIPLAATL-ATNA--VF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD---PQTNHNIIPERRILRE 761 (863)
Q Consensus 690 gLggG~~Pigav~-~~~~--i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~---~~l~~~l~~~~~~l~~ 761 (863)
-|++ +-.++++ .+.+ .+ +.+.. .+....|.+.+=+-+|..-.+..+++. .++.+++.+....+++
T Consensus 387 tL~a--lTQaS~LHv~~~~~~id~~r~~~-----~l~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~ 459 (755)
T PRK15029 387 LLNA--LSQASYIHVREGRGAINFSRFNQ-----AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQ 459 (755)
T ss_pred cccc--hhhhhhheeCCCccccCHHHHHH-----HHHHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 6654 2333332 2211 11 12221 122334556665666666566666653 2344555555666665
Q ss_pred HHHHHHHHHHh-cC--------C-Cee------------------------Eeccc-----c-------------eEEEE
Q 002941 762 LWDLELIQQIS-SH--------R-TVQ------------------------RVVAL-----G-------------TLCAI 789 (863)
Q Consensus 762 ~l~~~l~~~~~-~~--------p-~v~------------------------~vrg~-----G-------------l~~~i 789 (863)
.+.+. ...+. +. | .|. .+-+. | +=+.|
T Consensus 460 ~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti 538 (755)
T PRK15029 460 AMARL-YKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSI 538 (755)
T ss_pred HHHhc-cccccccccccccccCccccccccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEE
Confidence 44221 00000 00 0 000 00000 0 00001
Q ss_pred EEccCCcCCCC---chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 790 el~~~~~~~~~---~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
....-+ ...+ ..--+..+.+.|.++||.+--.+ +.+.++.++..|+++++.++++|.+.-+
T Consensus 539 ~~~~~g-~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 539 LAPGMG-EDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_pred EcCCCC-CCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 110000 0000 00114468888888999997654 6677777889999999999998876643
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00086 Score=77.75 Aligned_cols=215 Identities=8% Similarity=-0.003 Sum_probs=115.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC-----eEEEecccccccc----cCCc
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWR----LGVE 672 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi-----lLI~DEV~TGfGR----tG~~ 672 (863)
+.|++.+++ ......+|+.--- ....|.+=| +++|.++|++||+ .|-+|=++.|+-- .-..
T Consensus 216 ~aL~~aI~~-----d~~~P~iVvataG-TT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 216 ADFKAKLLA-----NKDKPAIINVNIG-TTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEec-CCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 456666653 1223444444321 234455544 9999999999997 9999999877621 1011
Q ss_pred chhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCc--cHHHHHHHHHHHHHhcChhh
Q 002941 673 TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA--HALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 673 ~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~--~pla~AAalAaL~~l~~~~l 748 (863)
|.+ -...|-+++. |.++.- +|-|+++.+++..+.+.....+-.. .-.|..+ +-...+...++|+.+-.+++
T Consensus 286 ~df---~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~~~Yl~~-~d~ti~gSR~g~~al~lW~~L~~~G~~G~ 360 (470)
T PLN02263 286 VTF---KKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLAS-RDATIMGSRNGHAPIFLWYTLNRKGYRGF 360 (470)
T ss_pred cCC---CcCccEEEECCccccCCC-cCEEEEEEehhhHhhhccChHhhCC-CCCCcCCCCCcHHHHHHHHHHHHhCHHHH
Confidence 111 1236777775 888777 6888999998766555322110000 0012222 21234556667776644554
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 828 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~ 828 (863)
.+.+.+ .-.+.+++.+. +.+.+...-.....+.+.+. .+. .....+|..+...++.+.+
T Consensus 361 ~~~i~~-~~~~A~~l~~~----l~~~g~~~~~~p~s~~V~f~--~p~--------------~~~~~~gW~L~~~~~~~Hi 419 (470)
T PLN02263 361 QKEVQK-CLRNAHYLKDR----LREAGISAMLNELSSTVVFE--RPK--------------DEEFVRRWQLACQGNIAHV 419 (470)
T ss_pred HHHHHH-HHHHHHHHHHH----HHhCCCeEEeCCCceEEEEe--cCc--------------hHHhhcceEEccCCCcEEE
Confidence 444332 22333333333 23333211122233333333 221 0123467766666666666
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.....++.+.+|++++-|.+....
T Consensus 420 vvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 420 VVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHhh
Confidence 655567889999999999887764
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.8e-05 Score=82.99 Aligned_cols=239 Identities=8% Similarity=0.070 Sum_probs=144.6
Q ss_pred HHHHHHHhcCCCC-CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---------
Q 002941 602 SYISQNLLQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--------- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~-~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--------- 671 (863)
+.|++.++..-.. .+..+--.+-+=|.-|+..|..+ +.+--++|.+|++|||+|+|-||++ .|=..+.
T Consensus 185 E~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpY-y~Lq~~~y~~~~~~~~ 262 (472)
T KOG0634|consen 185 ESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPY-YFLQMNTYNPSLELES 262 (472)
T ss_pred HHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCcc-ceeeccccCCCccccC
Confidence 4566666542111 11112333444465588889665 6777899999999999999999998 4434442
Q ss_pred -cchhhhc-----------CCCCcEE---EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHH
Q 002941 672 -ETTADLL-----------GCVPDIA---CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736 (863)
Q Consensus 672 -~~a~e~~-----------gv~PDiv---t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAa 736 (863)
.+..+.+ +..-.++ +|||-++-| +.+|.+.+++.+++.+.... ...|-+.+..+....
T Consensus 263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~a------e~~t~~pSg~sq~iv 335 (472)
T KOG0634|consen 263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDLA------EVATSGPSGFSQGIV 335 (472)
T ss_pred ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhhc------ceeecCcccccHHHH
Confidence 1111111 1112233 899999999 89999999997776554321 234445566777778
Q ss_pred HHHHHHhcChhhH---HhHHHHHHHHHHHHHHHHHHHHhc-CC---CeeEecccceEEEEEEccCCcCCCCc-hHHHHHH
Q 002941 737 AKSIKWFKDPQTN---HNIIPERRILRELWDLELIQQISS-HR---TVQRVVALGTLCAIELQAAGCNAGYG-SLYAASL 808 (863)
Q Consensus 737 lAaL~~l~~~~l~---~~l~~~~~~l~~~l~~~l~~~~~~-~p---~v~~vrg~Gl~~~iel~~~~~~~~~~-~~~~~~l 808 (863)
-+.|+..-+++++ .+++..-...+..+ ...+.+ .| +..-+.--|+|+.|++.-...+.... ......+
T Consensus 336 ~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~----l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i 411 (472)
T KOG0634|consen 336 YAMLKRWGQEGFLRWIQHLRSSYTERRNAL----LSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEII 411 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHH
Confidence 8888877665444 44443333333322 223332 34 23344567999999996211111111 1245566
Q ss_pred HHHHHHCCcEEEec-----------CC-EEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 809 LKKLREDGVYMRPL-----------GN-VIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 809 ~~~l~e~GV~~~p~-----------g~-~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
...+.++||.+.++ +. .+|++-. ....|++++.+++|..++++.-
T Consensus 412 ~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a-~a~~e~l~~g~~rf~~~ike~f 468 (472)
T KOG0634|consen 412 FIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA-FAEPEKLDEGIERFGSVIKEHF 468 (472)
T ss_pred HHHHHHCCeEEecCceeEEcCccCCCcceEEEEee-cCCHHHHHHHHHHHHHHHHHHh
Confidence 77888999998752 12 5555422 3477899999999999988743
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.8e-06 Score=92.98 Aligned_cols=197 Identities=16% Similarity=0.153 Sum_probs=113.5
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
+|++.+|+.+.. .++-. -...+...+|.+++++++|. +.++|+.||+.||..|++...+ ++
T Consensus 8 ~~~m~~a~~~a~--~gd~~--Yg~D~~~~~l~~~i~~l~g~---e~a~f~~sGT~An~~al~~~~~---------~~--- 68 (290)
T PF01212_consen 8 TPAMLEAMAAAN--VGDDA--YGEDPTTARLEERIAELFGK---EAALFVPSGTMANQLALRAHLR---------PG--- 68 (290)
T ss_dssp -HHEEHHHHHTT--SB-CC--TTSSHHHHHHHHHHHHHHTS---SEEEEESSHHHHHHHHHHHHHH---------TT---
T ss_pred CHHHHHHHHccc--cCCcc--cCCChhHHHHHHHHHHHcCC---CEEEEeCCCChHHHHHHHHHHh---------cC---
Confidence 599999994433 22211 13467889999999999994 6788999999999999998742 11
Q ss_pred CCccccccccEEEEecCC-CccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 498 KDTTEKCIELKVLALKGS-YHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~s-YHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
..||+-+.+ +|....++. .++| ...+++|....
T Consensus 69 ---------~~vi~~~~aHi~~~E~ga~~~~~G------------------------------~~~~~l~~~~~------ 103 (290)
T PF01212_consen 69 ---------ESVICADTAHIHFDETGAIEELSG------------------------------AKLIPLPSDDD------ 103 (290)
T ss_dssp ---------EEEEEETTEHHHHSSTTHHHHHTT------------------------------CEEEEEBECTG------
T ss_pred ---------CceeccccceeeeeccchhhHhcC------------------------------cEEEECCCccc------
Confidence 345554442 222223332 1111 11122221000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
+. -+ .+.|++.++..- . +..++++|.+|-- ....|-.+++.+.+++|.++|++||+
T Consensus 104 G~-------------l~--------~~~l~~~~~~~~-~-h~~~~~~v~le~t-~~~~GG~~~s~~el~ai~~~a~~~gl 159 (290)
T PF01212_consen 104 GK-------------LT--------PEDLEAAIEEHG-A-HHPQPAVVSLENT-TELAGGTVYSLEELRAISELAREHGL 159 (290)
T ss_dssp TB-------------B---------HHHHHHHHHHHT-G-TSGGEEEEEEESS-BTTTTSB---HHHHHHHHHHHHHHT-
T ss_pred CC-------------CC--------HHHHHHHhhhcc-c-cCCCccEEEEEec-CcCCCCeeCCHHHHHHHHHHHHhCce
Confidence 00 01 245566665311 1 4467999999975 56655577789999999999999999
Q ss_pred eEEEecccccccccCC-----cchhhhcCCCCcEEEe--ccccCCCCCCceee-eccHHHHHh
Q 002941 656 PVIFDEVFTGFWRLGV-----ETTADLLGCVPDIACY--GKLLTGGVIPLAAT-LATNAVFDS 710 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~-----~~a~e~~gv~PDivt~--sKgLggG~~Pigav-~~~~~i~~~ 710 (863)
.|.+| |- |... .-....+----|++++ .|+++ .|.|++ ++++++++.
T Consensus 160 ~lhmD----GA-Rl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g---~~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 160 PLHMD----GA-RLANAAAALGVSLAEIAAGADSVSFGGTKNGG---APGGAVLAGNKEFIAK 214 (290)
T ss_dssp EEEEE----ET-THHHHHCHHHHHHHHHHTTSSEEEEETTSTT----SSSEEEEEESHHHHHH
T ss_pred EEEEe----hh-hHHHhhhcccccHHHHhhhCCEEEEEEEcccc---cccceEEEechHHHHH
Confidence 99999 43 4321 0011111234688766 57654 456665 467875443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00035 Score=77.96 Aligned_cols=314 Identities=14% Similarity=0.048 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...+|.+.|++++| ++.| +--|+|+..=-+.|.+. |+||..+|+. . ++++....|-||.--
T Consensus 109 ~li~~Lq~~L~~ITG---~DavsLQP~AGAqGE~aGll~I-r~YHe~rG~~-~------------R~~~LIP~SAHGTNP 171 (496)
T COG1003 109 ELIYELQEWLKEITG---MDAVSLQPNAGAQGEYAGLLAI-RAYHESRGEG-H------------RNICLIPDSAHGTNP 171 (496)
T ss_pred HHHHHHHHHHHHhcC---CceeeccCCCCcchhhHHHHHH-HHHHHHcCCC-c------------CcEEEeeccccCCCh
Confidence 456689999999998 5666 45678888877778777 7899998863 2 568888899999877
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.+.++.| +..+.++-. ...+ .+ .
T Consensus 172 ASAam~G------------------------------~~VV~V~~~---------------------~~G~-VD-----l 194 (496)
T COG1003 172 ASAAMAG------------------------------FKVVVVKCD---------------------ENGN-VD-----L 194 (496)
T ss_pred hhHhhcC------------------------------ceEEEEecC---------------------CCCC-cc-----H
Confidence 6666543 111222200 0001 01 3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecc----cccccccCCcch-h
Q 002941 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-A 675 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV----~TGfGRtG~~~a-~ 675 (863)
++|+..++ +++||+++ .| +.-|+.- +-+.++.++..++|.+|..|-+ +-|.-|-|.+++ .
T Consensus 195 ddLk~k~~--------~~~AalMiTnP---sT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV 260 (496)
T COG1003 195 DDLRAKAE--------DNLAALMITNP---STLGVFE---EDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV 260 (496)
T ss_pred HHHHHHhc--------cceeEEEeccC---cccccch---hhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence 45555553 56776655 56 3456543 2377888888999999999966 445555565332 2
Q ss_pred hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhc----CCc---------cceeecccCCCccHHHHHHHHHHHHH
Q 002941 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG----DSK---------LKALLHGHSYSAHALGCAAAAKSIKW 742 (863)
Q Consensus 676 e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~----~~~---------~~~~~~~~T~~~~pla~AAalAaL~~ 742 (863)
-|+++.- ||+-.=|||---.|-|.+++.+..++.. ... .....-..+|.||......+.+-+..
T Consensus 261 ~HlNLHK---TF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~ 337 (496)
T COG1003 261 VHLNLHK---TFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRM 337 (496)
T ss_pred EEeeccc---ccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHH
Confidence 2332210 4443334442334456677888777654 110 01122345677888888888888887
Q ss_pred hcChhhH---HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc-CCCCchHHHHHHHHHHHHCCcE
Q 002941 743 FKDPQTN---HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC-NAGYGSLYAASLLKKLREDGVY 818 (863)
Q Consensus 743 l~~~~l~---~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~-~~~~~~~~~~~l~~~l~e~GV~ 818 (863)
+-.+++. +...-++.++..+| .. .++.. ..+.. ...-|+.-+.. -.......+..++++|++.|+.
T Consensus 338 mG~~GL~~ase~AvLNANYia~rL----~~---~y~~~--y~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfH 407 (496)
T COG1003 338 MGADGLKQASEVAVLNANYIARRL----KG---YYPVP--YTGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFH 407 (496)
T ss_pred HhHHHHHHHHHHHHHhHHHHHHHh----hh---cCccc--cCCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhcCCC
Confidence 7554443 22233344444432 21 23321 12232 34444432210 0000112467899999999997
Q ss_pred EE----e--cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 819 MR----P--LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 819 ~~----p--~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
.. | ..+.+++-|.-.-+.+++|++++++.++..+.+++.
T Consensus 408 aPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 408 APTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred CCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 64 4 458899998888899999999999999888877653
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00034 Score=74.98 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=125.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
+.+++.|.+ ....+.+|+-. .++.|+.-+ .++...++|++|+++|++|-|-+ + .|..|.++.|||
T Consensus 132 e~i~~~lsq------h~p~~vfv~hg--dsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV- 196 (385)
T KOG2862|consen 132 EEITEKLSQ------HKPKAVFVTHG--DSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV- 196 (385)
T ss_pred HHHHHHHHh------cCCceEEEEec--Cccccccch---HHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc-
Confidence 456666753 22234444443 456676543 57788899999999999999875 4 366889999987
Q ss_pred CcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCc-cceeecc----cCCC-----------ccHH-HHHHHHHHHHH
Q 002941 682 PDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHG----HSYS-----------AHAL-GCAAAAKSIKW 742 (863)
Q Consensus 682 PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~~~----~T~~-----------~~pl-a~AAalAaL~~ 742 (863)
|+.-- =|+|++- .-++.+..+++.++.++.... ...+++. .+|. ..|+ ..-+-.++|+.
T Consensus 197 -DvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~ 274 (385)
T KOG2862|consen 197 -DVAYTGSQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALAL 274 (385)
T ss_pred -cEEEecchhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHH
Confidence 65533 3888752 224447778888888875321 1111110 1111 1233 33455677877
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-
Q 002941 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP- 821 (863)
Q Consensus 743 l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p- 821 (863)
+-+++ +++.+++-+++.+.++..+.++--+.=.+.+-...-..-++..+.. ....+++..++.++.+.-.
T Consensus 275 I~eeG-L~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~g--------vDw~dVv~~~~~~~~vei~g 345 (385)
T KOG2862|consen 275 IAEEG-LENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYG--------VDWKDVVAYAMSHYVVEIGG 345 (385)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCC--------CCHHHHHHHHHHhcCEEecc
Confidence 75555 4556666666766665554432111100000000111111211110 1245678888888554432
Q ss_pred -----cCCEEEEecCCC-CcHHHHHHHHHHHHHHHHH
Q 002941 822 -----LGNVIYLMCGPC-SSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 822 -----~g~~lr~~ppl~-~t~eeid~~v~~L~~~l~~ 852 (863)
.|..+||-.--+ .+-|-|+..++.|..++.+
T Consensus 346 glg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 346 GLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 246777763333 3778889888888887754
|
|
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.8e-06 Score=89.13 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=62.7
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC--------
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-------- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-------- 292 (863)
+|++||.+..|+.... .......+ .+|+|+.....++.++...++.++..+....++|+|++...
T Consensus 127 yD~VIiDtpp~~~~~~------~~~l~~aD-~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 127 YDYILIDCPAGIDVGF------INAIAPAQ-EAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCEEEEeCCCCCCHHH------HHHHHhcC-eeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccc
Confidence 4999999977653322 22222223 58889999999999999999999888877789999988432
Q ss_pred CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 293 NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 293 ~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
....++++ -+.|+++ ||+.+.+
T Consensus 200 ~~~~l~~~--~~~~~~~~Ip~d~~v 222 (281)
T CHL00175 200 SVRDVQEM--LGIPLLGAIPEDENV 222 (281)
T ss_pred cHHHHHHH--hCCCeEEEccCCHhH
Confidence 22335555 3689999 9887654
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=80.30 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=114.7
Q ss_pred HHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 428 TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 428 q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
+++..++.. ....+|-...|+||++.+=|+ -....+.||-.|.-.|+--..+ .| .
T Consensus 48 ~l~~~G~iY-sRi~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~la~---------aG------------D 102 (426)
T COG2873 48 GLKEPGNIY-TRIMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNLAG---------AG------------D 102 (426)
T ss_pred CCCcCCcee-eeccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHhcc---------CC------------C
Confidence 344545442 234577788899999997553 3456677999888888765522 23 5
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
.||+-..-|=|+ ..-.+.+ ++ .+|.- + .|
T Consensus 103 ~iVss~~LYGGT-~~lf~~t----l~---------~~Gi~--------------v----------------~f------- 131 (426)
T COG2873 103 NIVSSSKLYGGT-YNLFSHT----LK---------RLGIE--------------V----------------RF------- 131 (426)
T ss_pred eeEeeccccCch-HHHHHHH----HH---------hcCcE--------------E----------------EE-------
Confidence 688887777554 2222221 00 00100 0 00
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
-+..| .+.++++++ ++..+|.+|.+ .+.++.++- ++++.++|++||++||+|-..+.
T Consensus 132 vd~~d--------~~~~~~aI~--------~nTkavf~Eti-gNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at-- 188 (426)
T COG2873 132 VDPDD--------PENFEAAID--------ENTKAVFAETI-GNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT-- 188 (426)
T ss_pred eCCCC--------HHHHHHHhC--------cccceEEEEec-cCCCccccC----HHHHHHHHHHcCCcEEEecCCCc--
Confidence 00011 134556664 46789999997 788776665 99999999999999999987642
Q ss_pred ccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhh
Q 002941 668 RLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l 711 (863)
.+-++-+..-.|||+ .+|-+||---.||.+++...-.|+-
T Consensus 189 ----pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~ 230 (426)
T COG2873 189 ----PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWT 230 (426)
T ss_pred ----ceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccc
Confidence 245555555689995 5799986226788887765555554
|
|
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.8e-06 Score=87.16 Aligned_cols=102 Identities=10% Similarity=0.134 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.+..+.+.| |++||++.+|+..+. .......+ -||+|+.....++.++...++
T Consensus 97 ~~~~l~~~l~~l~~~~-------------D~viiD~p~~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~ 156 (261)
T TIGR01968 97 TPEQMKKLVNELKEEF-------------DYVIIDCPAGIESGF------RNAVAPAD-EAIVVTTPEVSAVRDADRVIG 156 (261)
T ss_pred CHHHHHHHHHHHHHhC-------------CEEEEeCCCCcCHHH------HHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Confidence 3345556666666665 999999988765432 12222222 378888999999999999999
Q ss_pred HHHhCCCcEEEEEEcCCCCC--------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHGLV--------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~~~--------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.+...+..-.++|+|++... ....+++. .+.|+++ ||.....
T Consensus 157 ~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~~ 207 (261)
T TIGR01968 157 LLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEI--LSIPLIGVIPEDEAI 207 (261)
T ss_pred HHHHcCCCceEEEEeCcCchhcccccccCHHHHHHH--hCCceeEEccCCHHH
Confidence 99877766789999987321 22344444 3688888 8886543
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0014 Score=81.79 Aligned_cols=217 Identities=13% Similarity=0.041 Sum_probs=125.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--------CCeEEEecccccccccCCcchhhhcCCCCcEEEec--
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--------KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG-- 688 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--------gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s-- 688 (863)
++..|.+--+ .+..|.+.| ++.+.++++.. ++++++|=+|+ +|.. . .+.-.+.+|.+++|
T Consensus 192 ~t~LVa~~~v-sN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~--p--iDv~~~~~Dfl~~S~H 261 (805)
T PLN02724 192 AYNLFAFPSE-CNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS--P--PDLSRYPADFVVVSFY 261 (805)
T ss_pred CcceEEEEcc-ccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC--C--CChhhcCCCEEEEecc
Confidence 3445666665 778898887 55555555432 36899999884 4332 1 12223458999886
Q ss_pred cccCCCCCCceeeeccHHHHHhhhcCCc-ccee--------ec--------c-cCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 689 KLLTGGVIPLAATLATNAVFDSFVGDSK-LKAL--------LH--------G-HSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 689 KgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~--------~~--------~-~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
|.+||- .-+|++++++++.+.+...-. .... ++ . -.-+.|.+++++..++|+++++-+ .+
T Consensus 262 K~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig-~~ 339 (805)
T PLN02724 262 KIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLT-IS 339 (805)
T ss_pred eeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhC-hH
Confidence 877632 237889999988776543100 0000 00 0 001346778888888999886533 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh--cCCCeeEe---------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE
Q 002941 751 NIIPERRILRELWDLELIQQIS--SHRTVQRV---------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM 819 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~--~~p~v~~v---------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~ 819 (863)
++.+....|.+++.+.|.++-. ..|.|.-. ..++.++.+.+...... .. ....+...+-++||.+
T Consensus 340 ~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~-~v---~~~~v~~l~~~~gI~v 415 (805)
T PLN02724 340 AIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGS-WV---GHREVEKLASLSGIQL 415 (805)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCC-Ee---CHHHHHHHHHhcCcEE
Confidence 5566666666666555433210 11222111 12566777777653200 00 0122333344567777
Q ss_pred Eec----------------------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 820 RPL----------------------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 820 ~p~----------------------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+ .+.+|++..+..|.+|||++++.|++..-
T Consensus 416 R~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 416 RTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred eeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 521 15689999999999999999999998763
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00053 Score=77.43 Aligned_cols=182 Identities=12% Similarity=0.028 Sum_probs=108.6
Q ss_pred HHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc-c---ce-eec
Q 002941 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-L---KA-LLH 722 (863)
Q Consensus 648 elc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~---~~-~~~ 722 (863)
++++.||+++++|=+++ +|-. ..-.+.+++ ++..-=|.+| - .-+|.+++++++.+.+....+ . .. ...
T Consensus 157 ~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~~--~~ss~~K~lG-P-~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd00611 157 EVPDTGGVPLVADMSSN-ILSR--PIDVSKFGV--IYAGAQKNLG-P-AGVTVVIVRKDLLGKARKITPSMLNYKTHADN 229 (355)
T ss_pred eecccCCCeEEEEcccc-ccCC--CCCHHHhCE--EEeecccccC-C-CceEEEEECHHHHhhcccCCCCcccHHHHHhc
Confidence 56677999999999996 4322 233333442 1111237663 2 237889999998876543210 0 00 001
Q ss_pred ccCC-CccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-Ee---ccc-ceEEEEEEccCC
Q 002941 723 GHSY-SAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQ-RV---VAL-GTLCAIELQAAG 795 (863)
Q Consensus 723 ~~T~-~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~v---rg~-Gl~~~iel~~~~ 795 (863)
..++ +.|-.+..+..++|+++.+. + .+++.++.+.+.+.+.+.+ ++.|.+. .. ..+ +.++.+.+...
T Consensus 230 ~~~~~Tpn~~~i~~L~aal~~l~~~gg-~e~i~~~~~~l~~~l~~~l----~~~~gl~~~~~~~~~rs~~vvsf~~~~~- 303 (355)
T cd00611 230 NSLYNTPPTFAIYMMGLVLKWLKEQGG-VEAMEKRNRQKAQLLYDTI----DNSNGFYRGPVDKRARSRMNVPFRLGKE- 303 (355)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHH----HhCccccccCCCHHHcCceEEEEEcCCh-
Confidence 1112 34556778888999998765 4 4666777777777665443 3332221 11 112 24566665431
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.....+...+.++|++..+. .+.+|+++...+|+||||+++++|++.
T Consensus 304 -------~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 304 -------ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred -------hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 12244556788899985443 268999988888999999999998873
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=79.10 Aligned_cols=74 Identities=22% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~ 275 (863)
.+.+.+.++.++| |+|||.+ .|........-++...+ -||+|+..+.-++..+..+++.++
T Consensus 201 ~~~~~l~~l~~~y-------------D~ViiD~-----pp~~~~~d~~~~~~~~d-~vilV~~~~~t~~~~~~~~~~~l~ 261 (274)
T TIGR03029 201 AFTDLLNKVMGDY-------------DVVIVDT-----PSAEHSSDAQIVATRAR-GTLIVSRVNETRLHELTSLKEHLS 261 (274)
T ss_pred HHHHHHHHHHhcC-------------CEEEEeC-----CCcccccHHHHHHHhCC-eEEEEEECCCCCHHHHHHHHHHHH
Confidence 4555666666666 9999999 34322223344555444 577899988899999999999999
Q ss_pred hCCCcEEEEEEcC
Q 002941 276 LRGYDVVAVVFED 288 (863)
Q Consensus 276 ~~~~~v~gvi~n~ 288 (863)
..|.+++|+|+|+
T Consensus 262 ~~~~~~~G~VlN~ 274 (274)
T TIGR03029 262 GVGVRVVGAVLNQ 274 (274)
T ss_pred hCCCCEEEEEeCC
Confidence 9999999999996
|
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0005 Score=83.17 Aligned_cols=312 Identities=14% Similarity=0.124 Sum_probs=159.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChh-hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGS-eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
+.+..+..+..++.++ .++.+|..+|| .+|.+++..+. + +.+.|.++...|=+-
T Consensus 194 ~G~i~eAe~~aA~~fg---Ad~tyfvvNGTS~~n~av~~a~~-----------~-----------~Gd~VLvdRN~HKSv 248 (713)
T PRK15399 194 TGPHLEAEEYIARTFG---AEQSYIVTNGTSTSNKIVGMYAA-----------P-----------AGSTLLIDRNCHKSL 248 (713)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHhc-----------C-----------CCCEEEeecccHHHH
Confidence 3455566666667777 57888888885 46666665442 1 134666788888887
Q ss_pred cccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 521 LGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 521 ~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
..++.++| .+.|-.+. +...|... ++|. .++.
T Consensus 249 ~~aLilsga~PVYl~P~----~n~~Gi~g--------------~I~~---------------------------~~~~-- 281 (713)
T PRK15399 249 AHLLMMSDVVPIWLKPT----RNALGILG--------------GIPR---------------------------REFT-- 281 (713)
T ss_pred HHHHHHcCCeeEEeccc----ccccCCcC--------------CCCh---------------------------hhcc--
Confidence 77777765 33332110 00111000 0000 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCc---EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE-EEecccccccccCCcch-
Q 002941 600 YSSYISQNLLQNPGLKVSGC---IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV-IFDEVFTGFWRLGVETT- 674 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~---iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL-I~DEV~TGfGRtG~~~a- 674 (863)
.+.+++.+++ +++. .++||.-|. -.|+..- ++.+.++| |+.+ ++||+|-|.-+....+.
T Consensus 282 -~e~I~~~i~~-----~p~~~~p~~vvit~pT---YdGi~yd----~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~ 345 (713)
T PRK15399 282 -RDSIEEKVAA-----TTQAQWPVHAVITNST---YDGLLYN----TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQG 345 (713)
T ss_pred -HHHHHHHHHh-----CCCcCCceEEEEECCC---CCceeeC----HHHHHHHh---CCCEEEEeccchhhhhcCcccCC
Confidence 1456666754 2322 578999895 3566554 66677777 7877 59999976555544222
Q ss_pred hhh--cCCCCcEE---Eec--cccCCCCCCceeeeccHHHH-HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-
Q 002941 675 ADL--LGCVPDIA---CYG--KLLTGGVIPLAATLATNAVF-DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD- 745 (863)
Q Consensus 675 ~e~--~gv~PDiv---t~s--KgLggG~~Pigav~~~~~i~-~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~- 745 (863)
... .+-.+|.+ |=| |-|++ +-.-|.+-.+..+- +.|.. ++..-.|.+.+=+-+|+.-.+..+++.
T Consensus 346 ~sam~~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~-----a~~m~~STSPsY~LmASLD~a~~~m~~~ 419 (713)
T PRK15399 346 KSGMSGERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNE-----AFMMHTSTSPSYPIVASVETAAAMLRGN 419 (713)
T ss_pred cChhhCCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHH-----HHHHHcCCCcHHHHHHHHHHHHHHHHhh
Confidence 111 11257887 434 76654 12222333332211 11221 122234455555555555555555543
Q ss_pred --hhhHHhHHHHHHHHHHHHHHHHHHHHhcC-CCeeEec--------------------ccce-----------EEEEEE
Q 002941 746 --PQTNHNIIPERRILRELWDLELIQQISSH-RTVQRVV--------------------ALGT-----------LCAIEL 791 (863)
Q Consensus 746 --~~l~~~l~~~~~~l~~~l~~~l~~~~~~~-p~v~~vr--------------------g~Gl-----------~~~iel 791 (863)
..+.++..+.+..+++.+.+ ..... +....+. |.+- =+.|..
T Consensus 420 ~G~~l~~~~i~~a~~fR~~l~~----~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t 495 (713)
T PRK15399 420 PGKRLINRSVERALHFRKEVQR----LREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILT 495 (713)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh----ccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEe
Confidence 23445555555566554422 11100 0000000 0000 000101
Q ss_pred ccCCcCCCC--chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGY--GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 792 ~~~~~~~~~--~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..-.....+ ..-.+..+.+.|.++||.+--.+ +.+.+..++..|+++++.++++|.+.-+
T Consensus 496 ~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 496 PGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred cCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 000000000 01135677888999999997654 6777888889999999999998876533
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00028 Score=79.95 Aligned_cols=234 Identities=15% Similarity=0.096 Sum_probs=132.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++-...|+++++++=| .+.++-++||-.|+.+++...++ .| ..|+..+..|.|.-
T Consensus 61 ~nPT~~~lE~~~a~LEg---~~~~~afsSGmaAI~~~~l~ll~---------~G------------D~vl~~~~~YG~t~ 116 (396)
T COG0626 61 GNPTRDALEEALAELEG---GEDAFAFSSGMAAISTALLALLK---------AG------------DHVLLPDDLYGGTY 116 (396)
T ss_pred CCccHHHHHHHHHHhhC---CCcEEEecCcHHHHHHHHHHhcC---------CC------------CEEEecCCccchHH
Confidence 46778889999999865 46789999999999988765531 12 57888888887753
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
...-.+.. .++ +....+ +...+
T Consensus 117 ~~~~~~l~--------------~~g-------------i~~~~~-----------------------d~~~~-------- 138 (396)
T COG0626 117 RLFEKILQ--------------KFG-------------VEVTFV-----------------------DPGDD-------- 138 (396)
T ss_pred HHHHHHHH--------------hcC-------------eEEEEE-----------------------CCCCh--------
Confidence 32221100 000 000000 00010
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
..+++.+. ++++-+|++|+- .+.-- .+.+ +++|.++++++|+++|+|..... ...++-+..
T Consensus 139 -~~~~~~~~-------~~~tk~v~lEtP-sNP~l-~v~D---I~~i~~~A~~~g~~vvVDNTfat------P~~q~PL~~ 199 (396)
T COG0626 139 -EALEAAIK-------EPNTKLVFLETP-SNPLL-EVPD---IPAIARLAKAYGALVVVDNTFAT------PVLQRPLEL 199 (396)
T ss_pred -HHHHHHhc-------ccCceEEEEeCC-CCccc-cccc---HHHHHHHHHhcCCEEEEECCccc------ccccChhhc
Confidence 12223331 246889999985 55443 3333 89999999999999999998742 122333334
Q ss_pred CCcEEEe--ccccCCCCCC-ceeeec-cHHHHHhhhcCCccceeecccC-C--CccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 681 VPDIACY--GKLLTGGVIP-LAATLA-TNAVFDSFVGDSKLKALLHGHS-Y--SAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~P-igav~~-~~~i~~~l~~~~~~~~~~~~~T-~--~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
-.||++- .|=++|.-=- .|++++ ++++.+.+.. .... + ...|..+--.+-.|+-|. -..++..
T Consensus 200 GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~--------~~~~~~G~~l~p~dA~l~lRGlkTL~--~Rm~~~~ 269 (396)
T COG0626 200 GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFF--------AQRANTGAVLSPFDAWLLLRGLRTLA--LRMERHN 269 (396)
T ss_pred CCCEEEEeccccccCCcceeeeEEecChHHHHHHHHH--------HHHhhcCCCCCHHHHHHHHhccchHH--HHHHHHH
Confidence 4799865 5988752122 234554 4555555421 1111 1 224444443333333221 1123444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEcc
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQA 793 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~ 793 (863)
+++..+.+ .++++|.|..|. |.|.|+.+++..
T Consensus 270 ~nA~~IA~--------~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 270 ENALKIAE--------FLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred HHHHHHHH--------HHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 44444443 445677666552 588999999986
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00042 Score=81.12 Aligned_cols=202 Identities=12% Similarity=-0.016 Sum_probs=110.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
+...||+... ... ...+ +++++++|+++|++|++|-+|+ .|-........-+ ...|++|. -|+|.|-
T Consensus 298 rPKLII~g~S-ayp--r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~-~~aDvvt~TTHKtLrGP-- 366 (586)
T PLN02271 298 RPKILICGGS-SYP--REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPF-DYCDIVTSTTHKSLRGP-- 366 (586)
T ss_pred CCeEEEECch-hcc--CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCC-cCCcEEEeCCcccCCCC--
Confidence 4557777553 111 2222 8899999999999999999995 4433211000001 13699876 4999652
Q ss_pred CceeeeccHH--------------------HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHH
Q 002941 697 PLAATLATNA--------------------VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNII 753 (863)
Q Consensus 697 Pigav~~~~~--------------------i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~ 753 (863)
.-|.++++++ +.+.+... ..+.+.+++ +...+|+-..+++.+..++ +.+++.
T Consensus 367 rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~a--VfPglqgGp---hn~~IAalAvalkea~~~efk~Ya~QVv 441 (586)
T PLN02271 367 RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFA--VFPSLQGGP---HNNHIAALAIALKQVATPEYKAYMQQVK 441 (586)
T ss_pred CceEEEecccccccccCCccccccccccHHHHHHhhcc--cCCccccCh---hHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1234555553 33333221 111122222 2223444444566554444 567777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec------
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL------ 822 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~------ 822 (863)
+|++.|.+.|.++ .++.|. .|. --++.+++.... -......+.|-+.||.+. |+
T Consensus 442 ~NAkaLA~~L~~~------G~~vv~--ggTdnHlvLvDl~~~g-------~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~ 506 (586)
T PLN02271 442 KNAQALASALLRR------KCRLVT--GGTDNHLLLWDLTTLG-------LTGKNYEKVCEMCHITLNKTAIFGDNGTIS 506 (586)
T ss_pred HHHHHHHHHHHHC------CCeEee--CCCCcceeeecCcccC-------CCHHHHHHHHHHcCeEeccccCCCCCCCCC
Confidence 8887777655332 233332 111 134445553321 013455666777898884 21
Q ss_pred CCEEEEecCCCC----cHHHHHHHHHHHHHHHH
Q 002941 823 GNVIYLMCGPCS----SPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 823 g~~lr~~ppl~~----t~eeid~~v~~L~~~l~ 851 (863)
...+|+-.|..+ .++|++++.+.|.++++
T Consensus 507 psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 507 PGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 146777655543 67889998888888876
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=76.44 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=60.0
Q ss_pred ceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC--C----HH
Q 002941 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--N----EV 295 (863)
Q Consensus 222 d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~--~----~~ 295 (863)
|++||++.+++... ........+ -+|+|+.....++..+...++.++..+.+..++|+|+.... . ..
T Consensus 64 d~viiD~p~~~~~~------~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG------FITAIAPAD-EALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH------HHHHHHhCC-cEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHH
Confidence 99999997764332 222233333 48889999999999999999999888888999999987332 1 12
Q ss_pred HHHHhhcCCCCeee-cCCCCC
Q 002941 296 PLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 296 ~~~~~~~~~~pvl~-~p~~~~ 315 (863)
.++++ .+.|+++ ||..+.
T Consensus 137 ~~~~~--~~~~v~~~Ip~~~~ 155 (179)
T cd02036 137 DIEEI--LGVPLLGVIPEDPA 155 (179)
T ss_pred HHHHH--hCCCEEEEecCCHH
Confidence 34444 3788888 887544
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.8e-05 Score=76.90 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=46.0
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCC--CcEEEEEEcCCCCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRG--YDVVAVVFEDHGLVN 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~--~~v~gvi~n~~~~~~ 293 (863)
+|++||++.+|+..+ ...+....+ -+|+|+....-.+..+...++.++..+ .+++++|+|++...+
T Consensus 95 yD~iiiD~~~~~~~~------~~~~l~~ad-~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP------VRNALAAAD-YVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH------HHHHHHTSS-EEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH------HHHHHHhCc-eeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 499999998766655 222222222 256667766667888888888888666 568999999996554
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=81.37 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=63.0
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcH---HHHHHHHHHHHhCC--CcEEEEEEcCCCCCC-H
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG--YDVVAVVFEDHGLVN-E 294 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~~~~~~--~~v~gvi~n~~~~~~-~ 294 (863)
.|++||...|++... .....+++.+.--||+|.....-++ +.+..+++.++..| .++.|+|+|+....+ .
T Consensus 148 ~DyVliD~~gdv~~g----gf~l~i~~~~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~~i 223 (329)
T cd02033 148 FDYVLLDFLGDVVCG----GFGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGEA 223 (329)
T ss_pred CCEEEEecCCcceec----cccchhhhcCCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcchH
Confidence 499999998866522 1223333334335788888887777 55777888888764 678999999985433 3
Q ss_pred HHHHHhhcCCCCeee-cCCCCCCC
Q 002941 295 VPLMSYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 295 ~~~~~~~~~~~pvl~-~p~~~~~~ 317 (863)
+.+.+. .++|+++ ||+.+...
T Consensus 224 e~~ae~--lgi~vLg~IP~D~~V~ 245 (329)
T cd02033 224 QAFAAH--AGIPILAAIPADEELR 245 (329)
T ss_pred HHHHHH--hCCCEEEECCCCHHHH
Confidence 344444 4899999 99988764
|
This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster. |
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00022 Score=75.73 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=87.1
Q ss_pred hHHHHhhhcCCCCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECC
Q 002941 180 PHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDG 259 (863)
Q Consensus 180 p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~ 259 (863)
|...++.. -+...-.+++..+++...+. .|++||.++=|+..|.......+|+ +|+|+-.
T Consensus 136 ~li~g~l~-vGe~~s~~lV~~~kk~a~E~------------~~~~IIDsaaG~gCpVi~sl~~aD~-------ai~VTEP 195 (284)
T COG1149 136 PLISGRLN-VGEEESGKLVTALKKHAKEL------------ADLLIIDSAAGTGCPVIASLKGADL-------AILVTEP 195 (284)
T ss_pred eeEEeecc-CCccccchHHHHHHHhhhhh------------cceeEEecCCCCCChHHHhhccCCE-------EEEEecC
Confidence 44444444 33445567777777766652 4999999999999997555555554 5788889
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhc-CCCCeee-cCCCCCC
Q 002941 260 RLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR-NRVPVLV-LPPLPQD 316 (863)
Q Consensus 260 ~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~-~~~pvl~-~p~~~~~ 316 (863)
.--++++...+++..+.-|++ .++|+|+....+. .++++-+ .++|+++ ||+..+.
T Consensus 196 Tp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~~i 252 (284)
T COG1149 196 TPFGLHDLKRALELVEHFGIP-TGIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDKDI 252 (284)
T ss_pred CccchhHHHHHHHHHHHhCCc-eEEEEecCCCCch-HHHHHHHHcCCCeeEECCcchhH
Confidence 999999999999999988887 7899999854444 6777654 3899999 9998775
|
|
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00046 Score=71.84 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.+..+.++| ..|++||.+..++. ......++...+ -||+|+....-++..+..+++.+
T Consensus 134 ~~l~~~l~~l~~~y-----------~~D~IiiD~pp~~~-----~~~~~~l~~~aD-~viiV~~~~~~~~~~~~~~~~~l 196 (207)
T TIGR03018 134 QRMRSLLHELARRY-----------PDRIIIIDTPPLLV-----FSEARALARLVG-QIVLVVEEGRTTQEAVKEALSAL 196 (207)
T ss_pred HHHHHHHHHHHhhC-----------CCCEEEEECCCCcc-----hhHHHHHHHhCC-EEEEEEECCCCCHHHHHHHHHHh
Confidence 44555666655554 23999999944332 223445555555 57788888888899999999999
Q ss_pred HhCCCcEEEEEEc
Q 002941 275 KLRGYDVVAVVFE 287 (863)
Q Consensus 275 ~~~~~~v~gvi~n 287 (863)
+ +.++.|+|+|
T Consensus 197 ~--~~~~~G~v~N 207 (207)
T TIGR03018 197 E--SCKVLGVVLN 207 (207)
T ss_pred c--CCCeEEEEeC
Confidence 8 7899999998
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00045 Score=74.85 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=64.3
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCC----CCC---C
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH----GLV---N 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~----~~~---~ 293 (863)
.|++||+. -|+ .+...+.+++.+---+|+|+....-....+..+++.+++-+.+|+|||.|.. ... .
T Consensus 167 ~D~vIID~-----PP~-~g~~d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g~ 240 (265)
T COG0489 167 YDYVIIDT-----PPG-TGDADATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGEGG 240 (265)
T ss_pred CCEEEEeC-----CCC-chHHHHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccCCCc
Confidence 49999998 454 4455677777776689999999999999999999999999999999999944 212 2
Q ss_pred HHHHHHhhcCCCCeee-cCCCCC
Q 002941 294 EVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 294 ~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
.+..-+++ + |++| +|..+.
T Consensus 241 ~~~~~~~~--~-~~~g~~p~~~~ 260 (265)
T COG0489 241 GEKYAERY--G-PYLGSIPLDPS 260 (265)
T ss_pred hhhHHHHh--c-cccccCCCChh
Confidence 33333332 2 7888 776554
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00068 Score=82.04 Aligned_cols=313 Identities=16% Similarity=0.152 Sum_probs=157.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChh-hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGS-eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
+.+..+..+..++.++ .++.+|..+|| .+|.+++..+. + +.+.|.++...|=+-
T Consensus 194 ~G~i~eAe~~AA~~fg---Ad~tyfvvNGTS~~n~av~~a~~-----------~-----------~Gd~VLvdRN~HKSv 248 (714)
T PRK15400 194 SGPHKEAEEYIARVFN---ADRSYMVTNGTSTANKIVGMYSA-----------P-----------AGSTVLIDRNCHKSL 248 (714)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCchHHHHHHHHHHhc-----------C-----------CCCEEEeecccHHHH
Confidence 3455555566666777 57888888885 46665554441 1 145677888888887
Q ss_pred cccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 521 LGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 521 ~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
..++.++| .+.|-.+. +...|... ++|. .++.
T Consensus 249 ~haLilsga~PVYl~P~----rn~~Gi~g--------------~I~~---------------------------~~~~-- 281 (714)
T PRK15400 249 THLMMMSDVTPIYFRPT----RNAYGILG--------------GIPQ---------------------------SEFQ-- 281 (714)
T ss_pred HHHHHHcCCeEEEeccc----ccccCCcc--------------CCCc---------------------------cccC--
Confidence 77777765 33332110 00001000 0000 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhh-
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL- 677 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~- 677 (863)
.+.+++.+++.-.. ...+++||.-|. -.|+..- ++.+.++|+.++ +++||+|-|.-+....+. ...
T Consensus 282 -~e~i~~~i~~~p~a--k~p~~~vit~pT---YdG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam 349 (714)
T PRK15400 282 -HATIAKRVKETPNA--TWPVHAVITNST---YDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGM 349 (714)
T ss_pred -HHHHHHHHHhCccc--cCccEEEEECCC---CccEecC----HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChh
Confidence 14456666541100 112368999895 3566554 788899998888 689999976655544332 111
Q ss_pred -cCCCC-c--EEEec--cccCCCCCCceeee-ccHHHH-HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC---h
Q 002941 678 -LGCVP-D--IACYG--KLLTGGVIPLAATL-ATNAVF-DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD---P 746 (863)
Q Consensus 678 -~gv~P-D--ivt~s--KgLggG~~Pigav~-~~~~i~-~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~---~ 746 (863)
.|-.+ | ++|=| |-|++ +..++.+ .+..+- +.|.. .+..-.|.+.+=+-+|+.-.+..+++. .
T Consensus 350 ~~ga~~~~~i~vtQStHKtL~a--lTQaS~LHvkg~vd~~~~n~-----a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~ 422 (714)
T PRK15400 350 SGGRVEGKVIYETQSTHKLLAA--FSQASMIHVKGDVNEETFNE-----AYMMHTTTSPHYGIVASTETAAAMMKGNAGK 422 (714)
T ss_pred hcCCCCCCceEEEEchhhcccc--hhHHhHHHHcCCCCHHHHHH-----HHHHHcCCCcHHHHHHHHHHHHHHHHhhhhH
Confidence 22222 4 66655 76654 2222222 211110 11111 122233445555555555555555643 2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhc-C-CCeeEec--------------------ccceE-----------EEEEEcc
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISS-H-RTVQRVV--------------------ALGTL-----------CAIELQA 793 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~-~-p~v~~vr--------------------g~Gl~-----------~~iel~~ 793 (863)
.+.++..+.+..+++.+. +. .. . +....+. |.+.+ +.|....
T Consensus 423 ~l~~~~i~~a~~~R~~l~----~~-~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpg 497 (714)
T PRK15400 423 RLINGSIERAIKFRKEIK----RL-RTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPG 497 (714)
T ss_pred HHHHHHHHHHHHHHHHHH----hC-CCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCC
Confidence 344555555555554332 11 10 0 0000000 10000 0010100
Q ss_pred CCcCCCC--chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGY--GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 794 ~~~~~~~--~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
-+....+ ..-.+..+.+.|.++||.+--.+ +.+.|..++..|+++++.++++|.+.-
T Consensus 498 i~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~ 557 (714)
T PRK15400 498 MKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (714)
T ss_pred CCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 0000000 01125567888999999997654 777788888999999999999887653
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=81.81 Aligned_cols=230 Identities=15% Similarity=0.136 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChhh-HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGSe-AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
..+..+..+.+++.+| .++.||...||. +|.+++..+. + +.+.|.++.+-|=+.
T Consensus 65 ~G~I~eAe~~aA~~fG---Ad~t~flvnGsT~g~~a~i~a~~-----------~-----------~gd~VLv~RN~HkSv 119 (417)
T PF01276_consen 65 EGIIKEAEELAARAFG---ADKTFFLVNGSTSGNQAMIMALC-----------R-----------PGDKVLVDRNCHKSV 119 (417)
T ss_dssp BTHHHHHHHHHHHHHT---ESEEEEESSHHHHHHHHHHHHHT-----------T-----------TTCEEEEETT--HHH
T ss_pred ccHHHHHHHHHHHhcC---CCeEEEEecCchHHHHHHHHHhc-----------C-----------CCCEEEEcCCcHHHH
Confidence 4456666677777888 578888777766 6666665552 1 134677777788888
Q ss_pred cccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 521 LGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 521 ~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
..++-+++ .+.|- .|. . ...|+. .+++. .++.
T Consensus 120 ~~alil~ga~Pvyi---------------~p~-~-~~~gi~-~~i~~---------------------------~~~~-- 152 (417)
T PF01276_consen 120 YNALILSGAIPVYI---------------PPE-D-NEYGII-GGISP---------------------------DEFN-- 152 (417)
T ss_dssp HHHHHHHTEEEEEE---------------EEE-E--TTS-B-EEB-G---------------------------GGGS--
T ss_pred HHHHHHcCCeEEEe---------------cCC-c-cccCCc-cCCCh---------------------------hhhh--
Confidence 88887765 22221 110 0 000000 00000 0111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEE---EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh
Q 002941 600 YSSYISQNLLQNPGLKVSGCIG---ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iA---AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+++ +++.-+ +||+-|- -.|+... +++|.++|+++++.|++||+|.+.-+.. .+--.
T Consensus 153 -~~~i~~~l~~-----~p~~k~~~~vvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~ 218 (417)
T PF01276_consen 153 -EEDIEEALKE-----HPDAKAPRLVVLTSPT---YYGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRS 218 (417)
T ss_dssp -HHHHHHHHHH-----CTTCHCESEEEEESS----TTSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTT
T ss_pred -HHHHHHHHHh-----CccccCceEEEEeCCC---CCeEEEC----HHHHHHHhcccCCEEEEEccccccccCC-CCccc
Confidence 1456677764 344434 8888885 4677776 9999999999999999999996543333 22223
Q ss_pred hcCCCCc-------EEEec--cccCCCCCCceeeeccHHH---HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc
Q 002941 677 LLGCVPD-------IACYG--KLLTGGVIPLAATLATNAV---FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK 744 (863)
Q Consensus 677 ~~gv~PD-------ivt~s--KgLggG~~Pigav~~~~~i---~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~ 744 (863)
.+..-.| ++|-| |.|++ +-.-|.+..+.+- .+.+.. .+....|.+.+-+-+|..-.+.++++
T Consensus 219 a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~-----~l~~~~TTSPSY~lmASlD~a~~~m~ 292 (417)
T PF01276_consen 219 ALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNE-----ALSMHQTTSPSYPLMASLDVARAQME 292 (417)
T ss_dssp CSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHH-----HHHHHS-SS--HHHHHHHHHHHHHHS
T ss_pred hhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHH-----HHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3455667 88877 77665 1223334343331 122221 12233566666666666666666662
Q ss_pred -C--hhhHHhHHHHHHHHHHHH
Q 002941 745 -D--PQTNHNIIPERRILRELW 763 (863)
Q Consensus 745 -~--~~l~~~l~~~~~~l~~~l 763 (863)
+ ..+.+++.+.+..+++.+
T Consensus 293 ~~~G~~l~~~~i~~a~~~R~~i 314 (417)
T PF01276_consen 293 EEEGRELLEEAIELAEEFRKKI 314 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 2 235566666666666544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.021 Score=62.05 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=127.4
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCC
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG 694 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG 694 (863)
.+++|.|++.-| +--.|-... +.+|-+++.+||++++.|=+|+. |-. ..+..+--.|.- |-=|=|.||
T Consensus 164 ~dd~AvV~L~~V-~y~TGql~d----m~aiT~~AH~~galv~wDLAHsa-Gav----p~~Lh~~gaDfaigcsyKYLNgG 233 (407)
T COG3844 164 TDDVAVVLLSHV-NYKTGQLLD----MRAITALAHQHGALVGWDLAHSA-GAV----PVDLHAAGADFAIGCSYKYLNGG 233 (407)
T ss_pred ccceEEEEeccc-cccccceee----HHHHHHHHHhcCceEEeehhccc-CCc----ceeecccCCCeeeeeeceeccCC
Confidence 468999999987 777887776 89999999999999999999962 211 112112223432 344656543
Q ss_pred CCCceeeeccHHHHHhhhcC-C----ccceeecccCC------------CccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 695 VIPLAATLATNAVFDSFVGD-S----KLKALLHGHSY------------SAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~-~----~~~~~~~~~T~------------~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
==..+.+.+.++..+..... + ..++|.....| ...-+++++-..+|++..+-+ +..++++.-
T Consensus 234 PGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~-i~~lR~kSl 312 (407)
T COG3844 234 PGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVD-ITELRKKSL 312 (407)
T ss_pred CCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcC-HHHHHHhhh
Confidence 11223333333333322110 0 00111111111 123457777788899886544 567777777
Q ss_pred HHHHHHHHHHHHHHhcCCC-eeEe---cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCC
Q 002941 758 ILRELWDLELIQQISSHRT-VQRV---VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGP 832 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~-v~~v---rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl 832 (863)
.|.+++.+-+......+++ +... .-+|.-+++... .+..+.+.|.++||+.-.. .+.+||.|.+
T Consensus 313 aLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp-----------~~~~V~qaLi~rGVigD~R~P~vlRfgftP 381 (407)
T COG3844 313 ALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP-----------HGYQVMQALIDRGVIGDFREPDVLRFGFTP 381 (407)
T ss_pred HHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC-----------cHHHHHHHHHHcCccccccCCCeeeecCcc
Confidence 7777664433222222332 1111 113333333332 4678999999999988543 4889987755
Q ss_pred -CCcHHHHHHHHHHHHHHHHHH
Q 002941 833 -CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 833 -~~t~eeid~~v~~L~~~l~~l 853 (863)
..+-+|+=.+|+.|+++++.+
T Consensus 382 lY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 382 LYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred ceechhHHHHHHHHHHHHHHhh
Confidence 478899999999999998865
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0051 Score=68.49 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCcchhhh-cCCCCcEEEe--ccccCCCCCCceeeecc-HHHHHhhhcCCcc
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADL-LGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFVGDSKL 717 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~-~gv~PDivt~--sKgLggG~~Pigav~~~-~~i~~~l~~~~~~ 717 (863)
++++|++|++-|+.|++|=+|- |+--.| .++. +. ..|+||- =|.|-|- .-|.++++ +++.+.+...
T Consensus 183 ~~~~reIad~VGA~L~~DmAHiaGLVA~G---~~p~P~~-~AdvVTtTTHKTlrGP--rGG~Il~~~eel~kkin~a--- 253 (413)
T COG0112 183 FKRFREIADEVGAYLMVDMAHVAGLIAGG---VHPNPLP-HADVVTTTTHKTLRGP--RGGIILTNDEELAKKINSA--- 253 (413)
T ss_pred HHHHHHHHHHhCceEEehHHHHHHHHhcc---cCCCCCC-ccceEeCCcccCCCCC--CceEEEeccHHHHHHhhhh---
Confidence 8999999999999999998873 221111 1111 11 2688865 4888752 33457777 4888887752
Q ss_pred ceeecccCCCccHH-HHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEc
Q 002941 718 KALLHGHSYSAHAL-GCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQ 792 (863)
Q Consensus 718 ~~~~~~~T~~~~pl-a~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~ 792 (863)
. +..+.+|+-+ .+||---++....+++ +..++.+|++.|.+.|.+.. +..|. .| .--++.+++.
T Consensus 254 --V-FPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G------~~vvs--GgTdnHl~lVDl~ 322 (413)
T COG0112 254 --V-FPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERG------FKVVS--GGTDNHLVLVDLR 322 (413)
T ss_pred --c-CCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcC------CeEec--CCccceEEEEEcc
Confidence 1 2233333322 3333222233333443 56778888888877554322 22221 11 1135666666
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEE----ecC-------CEEEEecCCCC----cHHHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMR----PLG-------NVIYLMCGPCS----SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g-------~~lr~~ppl~~----t~eeid~~v~~L~~~l~~l~ 854 (863)
+.. .........|-+.||.+. |+. ..||+-.|..+ .++|..++-+.+.+++...+
T Consensus 323 ~~~-------~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 323 SKG-------LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred cCC-------CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc
Confidence 321 013445566667788885 222 56788766654 67899999999999988743
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0024 Score=77.40 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+..+.+.|+++||.+--.+ +.+.+..++..|+++++.++++|.+.-+
T Consensus 517 g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~ 564 (720)
T PRK13578 517 ATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888889999997654 6777777889999999999999876644
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.001 Score=75.62 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=100.9
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~ 696 (863)
...||+-+- ..+-+.+ +++++++|++.|++|++|=.|. |+ --|..+. .-+. ..|+||.+ |.|.|-
T Consensus 170 PklIi~G~S------~y~~~~d-~~~~reIad~vga~l~~D~sH~~GL-Ia~g~~~-~P~~-~ADvvt~sThKtl~GP-- 237 (399)
T PF00464_consen 170 PKLIICGAS------SYPRPID-FKRFREIADEVGAYLMADISHIAGL-IAGGLFP-NPFP-YADVVTGSTHKTLRGP-- 237 (399)
T ss_dssp -SEEEEE-S------STSS----HHHHHHHHHHTT-EEEEE-TTTHHH-HHTTSS---GCC-TSSEEEEESSGGG-SS--
T ss_pred CCEEEECch------hccCccC-HHHHHHHHHhcCcEEEecccccccc-eehheec-Cccc-cceEEEeecccccccc--
Confidence 345666553 1233333 5999999999999999999986 33 1121111 1122 26999775 999862
Q ss_pred Cceeeecc--------------HHHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcCh---hhHHhHHHHHHH
Q 002941 697 PLAATLAT--------------NAVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDP---QTNHNIIPERRI 758 (863)
Q Consensus 697 Pigav~~~--------------~~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~---~l~~~l~~~~~~ 758 (863)
.-|.++++ +++.+.+... ++. ...++ +.-..|+-..+|....++ ++..++.++++.
T Consensus 238 rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a-----vfP-~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~ 311 (399)
T PF00464_consen 238 RGGIILTNKGSKNVDKKGKEIDEELAEKIDSA-----VFP-GLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKA 311 (399)
T ss_dssp S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHH-----HTT-TT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCccccCCcccccHHHHHHHhccc-----cCC-CcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 34557777 7888887641 111 22222 233333333344444343 456788888888
Q ss_pred HHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c------CCEEE
Q 002941 759 LRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIY 827 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~------g~~lr 827 (863)
|.+.|.+...+++. .| .--++.+++.... .......+.|.+.||++.. . ...+|
T Consensus 312 La~~L~~~G~~v~~--------ggTd~H~vlvd~~~~~-------~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlR 376 (399)
T PF00464_consen 312 LAEALQERGFKVVT--------GGTDNHQVLVDLRSFG-------IDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLR 376 (399)
T ss_dssp HHHHHHHTT-EEGG--------GS-SSSEEEEEGGGGT-------S-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEE
T ss_pred HHHHHhhCCcEEEE--------CCCCCCeEEEEecccc-------cchHHHHHHHHhcCeeecccccCCCCCCCCCCEEE
Confidence 88766443322221 11 1135566665421 1245667788899999963 2 25788
Q ss_pred EecCCCC----cHHHHHHHHH
Q 002941 828 LMCGPCS----SPEVCSQLLL 844 (863)
Q Consensus 828 ~~ppl~~----t~eeid~~v~ 844 (863)
+-.+..+ .++|+.++-+
T Consensus 377 lGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 377 LGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp EESHHHHHTT--HHHHHHHHH
T ss_pred ECCHHHHhCCCCHHHHHHHHh
Confidence 8755443 5566655544
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.004 Score=78.49 Aligned_cols=202 Identities=16% Similarity=0.090 Sum_probs=110.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--c---ccCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--K---LLTG 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--K---gLgg 693 (863)
+++++++-= .+..|.+.+ +++|.++|+++|+++++|=.+...+.. + .-.. .-.|+++.+ | .+|.
T Consensus 206 ~~~~vlvq~--p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l-~--~pge--~GaDi~vgs~qkfg~P~g~ 274 (954)
T PRK05367 206 DVFGVLLQY--PGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL-T--PPGE--MGADIAVGSAQRFGVPMGF 274 (954)
T ss_pred cEEEEEEec--CCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC-C--Chhh--cCCCEEEeeCcccCCCCCC
Confidence 566654432 356787775 999999999999999999755322111 1 1122 235777552 3 2232
Q ss_pred CCCC-ceeeeccHHHHHhhhcCC-cc-------ceee------------cccCCC-ccHHHHHHHHHH--HHHhcChhhH
Q 002941 694 GVIP-LAATLATNAVFDSFVGDS-KL-------KALL------------HGHSYS-AHALGCAAAAKS--IKWFKDPQTN 749 (863)
Q Consensus 694 G~~P-igav~~~~~i~~~l~~~~-~~-------~~~~------------~~~T~~-~~pla~AAalAa--L~~l~~~~l~ 749 (863)
| =| .|++.+++++.+.+...- .+ ..+. -..|.. ....+..++++. +.++...+ .
T Consensus 275 G-GP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~G-l 352 (954)
T PRK05367 275 G-GPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEG-L 352 (954)
T ss_pred C-CCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhh-H
Confidence 2 13 566778888877764210 00 0000 000111 112222333333 24343333 3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEE
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYL 828 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~ 828 (863)
+++.++...+..++.++|.+ .....+.... .+ .+.+.+. . .+.++.++|.++||.++.. ++.+++
T Consensus 353 ~~Ia~~~~~la~~l~~~L~~--~G~~~~~~~~-f~-~~~~~~~-~---------~~~~i~~~l~~~gi~~~~~~~~~l~i 418 (954)
T PRK05367 353 KAIARRVHRLAAILAAGLRA--LGLEVVHDSF-FD-TLTVEVG-G---------DAAAVLARALAAGINLRRVDDDHVGI 418 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCcccCCCCC-CC-eEEEeCC-C---------CHHHHHHHHHHCCceeccccCCEEEE
Confidence 34445555555554444322 1122111110 11 2223321 1 2567999999999999766 578999
Q ss_pred ecCCCCcHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~ 847 (863)
+|....|++|||.++++|.
T Consensus 419 s~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 419 SLDETTTREDLAALLAVFG 437 (954)
T ss_pred EecccCCHHHHHHHHHHHc
Confidence 9999999999999999997
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=65.32 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC--CHHHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--NEVPL 297 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~--~~~~~ 297 (863)
.+|++||.+.+|+.. .........+ -+|+|+.....++..+...++.++..+.++ ++|+|++... ....+
T Consensus 92 ~~d~viiDtpp~~~~------~~~~~l~~aD-~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~~~~~~~ 163 (179)
T cd03110 92 GAELIIIDGPPGIGC------PVIASLTGAD-AALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLNDEIAEEI 163 (179)
T ss_pred CCCEEEEECcCCCcH------HHHHHHHcCC-EEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCcchHHHH
Confidence 459999999877532 2223333333 367788888889999988999998888775 8999998432 23345
Q ss_pred HHhhc-CCCCeee-cC
Q 002941 298 MSYLR-NRVPVLV-LP 311 (863)
Q Consensus 298 ~~~~~-~~~pvl~-~p 311 (863)
+++++ .++||+| ||
T Consensus 164 ~~~~~~~~~~vl~~ip 179 (179)
T cd03110 164 EDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHcCCCeEEeCC
Confidence 55554 3899999 87
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0054 Score=69.59 Aligned_cols=177 Identities=8% Similarity=-0.019 Sum_probs=110.1
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCC-ceeeeccHHHHHhhhcCCc-cce----eecccCC-C
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVGDSK-LKA----LLHGHSY-S 727 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~P-igav~~~~~i~~~l~~~~~-~~~----~~~~~T~-~ 727 (863)
+++|+|=+++ +| +...-.+.+|+ |+..-=|.+| -| +|.+++++++.+......+ ... ....+++ +
T Consensus 171 ~~lvVDa~Ss-~g--~~pidv~~~~v--~~~saqK~lG---P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T 242 (365)
T PLN02452 171 VPLVADMSSN-FL--SKPVDVSKYGV--IYAGAQKNVG---PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT 242 (365)
T ss_pred CeEEEECCcc-cc--CcccCHHHcCE--EEEecccccC---CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence 8999998885 42 33455566665 5555569884 33 7889999999876543211 000 0122333 4
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eE-e--c-ccceEEEEEEccCCcCCCCch
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QR-V--V-ALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~-v--r-g~Gl~~~iel~~~~~~~~~~~ 802 (863)
.+-.++.+..++|+++++++=.+.+.++.+.+.+.+.+.+ ++.+.+ .. + . .....+.+.+.+..
T Consensus 243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l----~~~~G~y~~~~~~~~rs~~~vsF~~~~~~------- 311 (365)
T PLN02452 243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAI----DESNGFYVCPVEKSVRSLMNVPFTLGGSE------- 311 (365)
T ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH----HhCCCcccCCCChHHhCCeEEEEEcCCch-------
Confidence 4566778888999998764225566666666666554443 333211 11 1 1 12334555554321
Q ss_pred HHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...+|.+.+.++|++..++. ..+|+..=-.++.++++.+++.+++.-+
T Consensus 312 -~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 312 -LEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred -hHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999987642 3388875456899999999998887654
|
|
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=76.09 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=39.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH 86 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~ 86 (863)
|+.+.|+|. +++|||+++..|++.|+ ++|++|++.|+..++.+.
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~-----~~G~~V~viK~~~~~~d~ 44 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLK-----ERGYRVATAKHTHHEFDK 44 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHH-----hCCCeEEEEEecccCCCC
Confidence 678999999 89999999999999999 899999999998776543
|
|
| >PRK11670 antiporter inner membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=74.86 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=58.3
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCC-EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-------
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~------- 292 (863)
+|++||...-|+ +.....++..+-+. +|+|.....-++..+..+++.+.+.++++.|+|+|.....
T Consensus 216 yDyvIID~PPg~------gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~ 289 (369)
T PRK11670 216 LDYLVLDMPPGT------GDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHH 289 (369)
T ss_pred CCEEEEeCCCCC------chHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccch
Confidence 499999994332 22233334433333 6777777777778888888888888999999999975211
Q ss_pred -------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 293 -------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 293 -------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
..+.+.+. -++|+++ ||....+
T Consensus 290 ~~if~~~~~~~lae~--~~~~ll~~IP~~~~I 319 (369)
T PRK11670 290 EPIFGTGGAEKLAEK--YHTQLLGQMPLHISL 319 (369)
T ss_pred hhhcccchHHHHHHH--cCCcEEEEeCCChHH
Confidence 12333333 3789999 8887664
|
|
| >PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0007 Score=83.45 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+++.+.++.+.++| |+|||.+ .|+..-....-+++..+.. |+|+..+.-....+..+++.+
T Consensus 623 ~~~~~ll~~l~~~y-------------D~ViiDt-----pP~~~v~Da~~l~~~~d~~-l~Vvr~~~t~~~~~~~~~~~l 683 (719)
T PRK11519 623 ERFAELVNWASKNY-------------DLVLIDT-----PPILAVTDAAIVGRHVGTT-LMVARYAVNTLKEVETSLSRF 683 (719)
T ss_pred HHHHHHHHHHHhcC-------------CEEEEeC-----CCcccchHHHHHHHHCCeE-EEEEeCCCCCHHHHHHHHHHH
Confidence 34555566666666 9999999 4443333445577777765 577777777788888999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
++.|.++.|+|+|++.
T Consensus 684 ~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 684 EQNGIPVKGVILNSIF 699 (719)
T ss_pred HhCCCCeEEEEEeCCc
Confidence 9999999999999883
|
|
| >TIGR02016 BchX chlorophyllide reductase iron protein subunit X | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00099 Score=73.38 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=55.4
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCC---cHHHHHHHHHHHHhCC--CcEEEEEEcCCCCC-CH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG---GISGTISAYESLKLRG--YDVVAVVFEDHGLV-NE 294 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g---~i~~~~~~~~~~~~~~--~~v~gvi~n~~~~~-~~ 294 (863)
+|++||...|++.++..........| =-||+|+....- +.+.+..+++.++..| +++.|||+|+.... ..
T Consensus 123 yD~IliD~~~~~~~~g~~~~~a~~~A----d~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~~~ 198 (296)
T TIGR02016 123 FDFVLMDFLGDVVCGGFATPLARSLA----EEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSGEA 198 (296)
T ss_pred CCEEEEecCCCccccccccchhhhhC----CeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCccHH
Confidence 49999998665422210001111111 135666665533 4466777777777654 78999999998432 22
Q ss_pred HHHHHhhcCCCCeee-cCCCCCCC
Q 002941 295 VPLMSYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 295 ~~~~~~~~~~~pvl~-~p~~~~~~ 317 (863)
+.+.+. .++|+++ ||+.+.+.
T Consensus 199 ~~~~~~--~~i~vLg~IP~d~~i~ 220 (296)
T TIGR02016 199 QAFARE--VGIPVLAAIPADEELR 220 (296)
T ss_pred HHHHHH--cCCCeEEECCCCHHHH
Confidence 333333 4899999 99987764
|
This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein. |
| >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=81.47 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+++.+.+.++..+| |+|||.+. |+.......-++...+ -+|+|+..+.-....+..+++.+
T Consensus 628 ~~~~~ll~~l~~~y-------------D~IIIDtP-----P~~~~~Da~~la~~ad-~~llVvr~~~t~~~~~~~~~~~l 688 (726)
T PRK09841 628 DRMRQLLEWANDHY-------------DLVIVDTP-----PMLAVSDAAVVGRSVG-TSLLVARFGLNTAKEVSLSMQRL 688 (726)
T ss_pred HHHHHHHHHHHhcC-------------CEEEEeCC-----CccccchHHHHHHhCC-eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35555566666666 99999994 4322222344454444 46788888888899999999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
.+.|.++.|+|+|++.
T Consensus 689 ~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 689 EQAGVNIKGAILNGVI 704 (726)
T ss_pred HhCCCceEEEEEeCcc
Confidence 9999999999999873
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0095 Score=67.74 Aligned_cols=211 Identities=11% Similarity=0.103 Sum_probs=117.4
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHH-cCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~ 696 (863)
+..+-.|.. .|+..| + .+++++ +++++|+|=|= +|| |..+-.+ ..|+++.| |+|++- -
T Consensus 131 v~~vhnETS----TGv~np----v---~~i~~~~~~~lliVDavS-s~g--~~~l~~d----~iDv~~tgsQK~L~~p-p 191 (374)
T TIGR01365 131 VVFTWNGTT----SGVRVP----N---GDFIPADREGLTICDATS-AAF--AQDLDYH----KLDVVTFSWQKVLGGE-G 191 (374)
T ss_pred EEEecCCCc----hheecc----c---cccccccCCCcEEEEccc-hhc--CCCCChh----HCcEEEEechhccCCC-C
Confidence 555555653 566665 2 344444 58999999665 453 3333333 27888775 999842 1
Q ss_pred CceeeeccHHHHHhhhcCCcc----c------------eeecccCCCc-cHHHHHHHHHHHHHhcChhhHHhHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDSKL----K------------ALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~----~------------~~~~~~T~~~-~pla~AAalAaL~~l~~~~l~~~l~~~~~~l 759 (863)
-+|.++.+++..+........ . ....+.|... +-.+.-+++.+|+.+++++=+++..++.+++
T Consensus 192 Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~ 271 (374)
T TIGR01365 192 AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDN 271 (374)
T ss_pred ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 256788898888765531110 0 0011234333 3345556677777765542245556666666
Q ss_pred HHHHHHHHHHHHhcCCCee---EecccceEEEEEEccCCc---CCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEE
Q 002941 760 RELWDLELIQQISSHRTVQ---RVVALGTLCAIELQAAGC---NAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYL 828 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p~v~---~vrg~Gl~~~iel~~~~~---~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~ 828 (863)
.+.+.+.+.++ ....... ..|. -....+.+..+.. ...+.-.....+.+.|.++|+.+.++ |+.+||
T Consensus 272 a~~l~~~l~~l-g~l~~~~~~~~~rS-~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRI 349 (374)
T TIGR01365 272 LAVLEAFVAKN-NWIHFLAETPEIRS-NTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRI 349 (374)
T ss_pred HHHHHHHHHHC-CCcccCCCChhhcC-CCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEE
Confidence 66554443321 1011111 1222 2234444432210 00011112567889999999988753 378898
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.---.++++|++.+++.|+-+..
T Consensus 350 g~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 350 WCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred ecCCcCCHHHHHHHHHHHHHHHh
Confidence 75556899999999999987654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.028 Score=70.89 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=107.6
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe-cccc----C
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY-GKLL----T 692 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~-sKgL----g 692 (863)
+.++++++-= .+..|.+.+ +++|.++|+++|+++|+ -++ .++-++-- .-..+ -.|+++. +.-+ |
T Consensus 233 ~~v~~vlvq~--P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad-~lal~~l~-~pge~--GADi~vgsgqKwg~P~G 301 (993)
T PLN02414 233 GDVCGVLVQY--PATDGEVLD----YAEFVKNAHANGVKVVM-ATD-LLALTMLK-PPGEW--GADIVVGSAQRFGVPMG 301 (993)
T ss_pred CceEEEEEec--CCCCeEEcC----HHHHHHHHHHcCCEEEE-EEC-HHHhcCCC-CHhhc--cCcEEEECCCccccCCC
Confidence 3566666422 245788876 89999999999999999 222 23222211 12222 3588765 2322 2
Q ss_pred -CCCCCceeeeccHHHHHhhhcC-------Ccc-cee--------ecc--cCCCccHH---HHHHHHHHH--HHhcChhh
Q 002941 693 -GGVIPLAATLATNAVFDSFVGD-------SKL-KAL--------LHG--HSYSAHAL---GCAAAAKSI--KWFKDPQT 748 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~-------~~~-~~~--------~~~--~T~~~~pl---a~AAalAaL--~~l~~~~l 748 (863)
|| --.|.+.+++++.+.+... ... ..+ .|. -..+.|.- +..++++++ .++-..+
T Consensus 302 ~GG-P~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~G- 379 (993)
T PLN02414 302 YGG-PHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG- 379 (993)
T ss_pred CCC-CCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhcccc-
Confidence 34 2267778888887754320 000 000 000 00012332 333333332 2222222
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIY 827 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr 827 (863)
.+++.++...+..++.++|.+ . ....+.. .-.+ .+.+.+ +. ..++.++|.++||.++.. ++.++
T Consensus 380 l~~Ia~ri~~la~~l~~~L~~-~-G~~~~~~-~~f~-~vt~~~--~~---------~~~v~~~L~~~gI~l~~~~~~~lr 444 (993)
T PLN02414 380 LKTIAQRVHGLAGVFAAGLKK-L-GFQVQSL-PFFD-TVKVKC--SD---------ADAIADAAAKVGINLRVVDANTVT 444 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-c-CCccCCC-CCcC-eEEEec--CC---------HHHHHHHHHHCCCeeEEecCCeEE
Confidence 234444444555544444322 1 1211111 1111 222332 11 357889999999998865 57899
Q ss_pred EecCCCCcHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~ 848 (863)
+++....|++|||.++++|..
T Consensus 445 vs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 445 VSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred EEeeccCCHHHHHHHHHHHcc
Confidence 999999999999999999963
|
|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=69.75 Aligned_cols=64 Identities=25% Similarity=0.183 Sum_probs=48.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC---HHH--------------HHHhhcCCCCeeecCCCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN---EVP--------------LMSYLRNRVPVLVLPPLP 314 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~---~~~--------------~~~~~~~~~pvl~~p~~~ 314 (863)
-+++|+....-++..+..+++.++..|+++.|+|+|++...+ ... +++.+ .+.|+..+|..+
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~-~~~~i~~vp~~~ 240 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELF-SDLPVAKLPLLP 240 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHh-cCCCEEEeecCC
Confidence 489999999999999999999999999999999999883321 111 11111 367888898877
Q ss_pred CC
Q 002941 315 QD 316 (863)
Q Consensus 315 ~~ 316 (863)
.-
T Consensus 241 ~e 242 (254)
T cd00550 241 EE 242 (254)
T ss_pred CC
Confidence 64
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.013 Score=65.40 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=65.8
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.++.+.+.| |++||...+++. .....+....+. +|+|+....-++..+...++
T Consensus 190 ~~~~l~~~l~~l~~~~-------------D~VIID~p~~~~------~~~~~~L~~AD~-vliV~~~~~~sl~~a~r~l~ 249 (322)
T TIGR03815 190 PPAAVRAVLDAARRGG-------------DLVVVDLPRRLT------PAAETALESADL-VLVVVPADVRAVAAAARVCP 249 (322)
T ss_pred CHHHHHHHHHHHHhcC-------------CEEEEeCCCCCC------HHHHHHHHHCCE-EEEEcCCcHHHHHHHHHHHH
Confidence 3445555666665555 999999965431 224444555554 77888887777777777777
Q ss_pred HHHhCCCcEEEEEEcCCC--CCCHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHG--LVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~--~~~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
.++..+.++ .+|+|... ....+.+++.+ +.|+++ ||+.+.+
T Consensus 250 ~l~~~~~~~-~lVv~~~~~~~~~~~~i~~~l--g~~v~~~Ip~d~~v 293 (322)
T TIGR03815 250 ELGRRNPDL-RLVVRGPAPAGLDPEEIAESL--GLPLLGEVRDQRGL 293 (322)
T ss_pred HHhhhCCCe-EEEEeCCCCCCCCHHHHHHHh--CCCceeeCCCChhH
Confidence 777665554 56778652 23566677764 789998 8886543
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0086 Score=62.62 Aligned_cols=93 Identities=22% Similarity=0.141 Sum_probs=61.5
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHh
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSY 300 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~ 300 (863)
+|+|||.+=-|+--- --.+++..++ +|.|++...-++-.+--..+...+-|+.=+++|+|++... ...+++.
T Consensus 134 ~e~VivDtEAGiEHf------gRg~~~~vD~-vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~-e~~~~~~ 205 (255)
T COG3640 134 YEVVIVDTEAGIEHF------GRGTIEGVDL-VIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE-EELLREL 205 (255)
T ss_pred CcEEEEecccchhhh------ccccccCCCE-EEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch-hHHHHhh
Confidence 599999985443211 1112222222 6788888776776666666666677888899999999766 3334443
Q ss_pred hc-CCCCeee-cCCCCCCCchhh
Q 002941 301 LR-NRVPVLV-LPPLPQDSSNDL 321 (863)
Q Consensus 301 ~~-~~~pvl~-~p~~~~~~~~~~ 321 (863)
.. .+.+|+| ||+.+.+..-++
T Consensus 206 ~~~~~~~vlg~iP~d~~v~~~dl 228 (255)
T COG3640 206 AEELGLEVLGVIPYDPEVVEADL 228 (255)
T ss_pred hhccCCeEEEEccCCHHHHhccc
Confidence 32 4899999 999998876544
|
|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0022 Score=66.90 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=29.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|-|+| -.|||||++|..|+.+|. ++|++|...-
T Consensus 2 ~iav~g-KGGvGKTt~~~nLA~~la-----~~G~rvLliD 35 (212)
T cd02117 2 QIAIYG-KGGIGKSTTSQNLSAALA-----EMGKKVLQVG 35 (212)
T ss_pred EEEEEC-CCcCcHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 367888 899999999999999999 8999987654
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.035 Score=64.78 Aligned_cols=317 Identities=14% Similarity=0.079 Sum_probs=184.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcc
Q 002941 443 EPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 443 ~~~~eLae~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+...+|.+.|++++| ++.+ |--|||+..--+.|+.. |.|...+|+ |. +.|....-|-||..-
T Consensus 582 ~lf~~Le~~Lc~iTG---~D~~s~QPNsGA~GEYaGL~~I-RaY~~~kge--~h-----------RnvClIPvSAHGTNP 644 (1001)
T KOG2040|consen 582 QLFTELEKDLCEITG---FDSFSLQPNSGAQGEYAGLRVI-RAYLESKGE--GH-----------RNVCLIPVSAHGTNP 644 (1001)
T ss_pred HHHHHHHHHhheeec---ccceeecCCCCcccchhhHHHH-HHHHHhccC--Cc-----------ceeEEEeecccCCCh
Confidence 445789999999998 5666 45678888777777766 889888886 32 568888899999876
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
.+..+.|-. .+|+- +. .+..-| .
T Consensus 645 ASA~Magmk------------------------------vvpV~-~~------------------~~G~id--------~ 667 (1001)
T KOG2040|consen 645 ASAAMAGMK------------------------------VVPVG-CD------------------ANGNID--------M 667 (1001)
T ss_pred hhHHhcCCE------------------------------EEEee-cc------------------CCCCcc--------H
Confidence 655543311 11110 00 000011 1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecc----cccccccCCcch-h
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-A 675 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV----~TGfGRtG~~~a-~ 675 (863)
.+|...-+ ++.++.||+++- | +.-|+.-+. ++.+.++-.+||--+.+|-+ |-|+-|-|-.++ .
T Consensus 668 ~dLk~kae-----kh~~~Laa~MvTYP---ST~GvfE~~---i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV 736 (1001)
T KOG2040|consen 668 VDLKAKAE-----KHKDNLAALMVTYP---STHGVFEEG---IDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADV 736 (1001)
T ss_pred HHHHHHHH-----HhhhhhheeEEecc---ccccccccc---HHHHHHHHHhcCCEEEecCCCccceecccCCccccccc
Confidence 23333333 256778887775 5 345655443 67788888999999999976 667766665433 2
Q ss_pred hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccce-----eecccCC----CccHHHHHHHHHHHHHhcCh
Q 002941 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA-----LLHGHSY----SAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 676 e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~-----~~~~~T~----~~~pla~AAalAaL~~l~~~ 746 (863)
.|+++.- ||.=.=|||---+|=+.+.+.++.++....-... ..-..|- .|+.+-.....|-++.|-..
T Consensus 737 ~HLNLHK---TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~ 813 (1001)
T KOG2040|consen 737 CHLNLHK---TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSG 813 (1001)
T ss_pred eeecccc---eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhccc
Confidence 2333221 3332233331334445567777776654321100 0001122 24445555667778887655
Q ss_pred hhHHh---HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCC---chHHHHHHHHHHHHCCcEEE
Q 002941 747 QTNHN---IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 747 ~l~~~---l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~---~~~~~~~l~~~l~e~GV~~~ 820 (863)
++.+. ..-++.++..+ ++.|-.+.. ++.-..++-||.-+- ++| ..-.+..++++|.+-|+...
T Consensus 814 GL~~as~~AiLNaNYMakR--------Le~hYkil~-~~~~~~vaHEFIlD~--r~fK~~agieavDvAKRL~DYgFHaP 882 (1001)
T KOG2040|consen 814 GLKDASKIAILNANYMAKR--------LESHYKILF-RGENGLVAHEFILDL--RPFKKTAGIEAVDVAKRLMDYGFHAP 882 (1001)
T ss_pred ccchhhHHHhhhhHHHHHH--------HhhccceeE-ecCCcceeeeeeeec--hhhccccCCcHHHHHHHHHhccCCCC
Confidence 54332 12233344332 233322222 222226666654331 111 11236789999999998664
Q ss_pred ----ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002941 821 ----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858 (863)
Q Consensus 821 ----p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~~ 858 (863)
|..+.+.+-|.-.-+.+|+|++++++-..-+++.++++
T Consensus 883 TmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ie~ 924 (1001)
T KOG2040|consen 883 TMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEIAQIEE 924 (1001)
T ss_pred ccccccCCceEeccCccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55689999987777889999999999877777777655
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.006 Score=68.83 Aligned_cols=193 Identities=15% Similarity=0.035 Sum_probs=116.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..+|....|.+.++++-+ ...++.++||-.|.-.|+...+ +.| .+||.+...|+|.
T Consensus 74 ~~nPt~~~le~~iaal~g---a~~~l~fsSGmaA~~~al~~L~---------~~g------------~~iV~~~~~Y~gT 129 (409)
T KOG0053|consen 74 SGNPTRDVLESGIAALEG---AAHALLFSSGMAAITVALLHLL---------PAG------------DHIVATGDVYGGT 129 (409)
T ss_pred CCCCchHHHHHHHHHHhC---CceEEEecccHHHHHHHHHHhc---------CCC------------CcEEEeCCCcccH
Confidence 346777788899999876 4679999999999999988662 123 5799999999886
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
....-... ..++...+ .-|.++
T Consensus 130 ~~~l~~~~--------------~~~gie~~----------------------------------------~vd~~~---- 151 (409)
T KOG0053|consen 130 LRILRKFL--------------PKFGGEGD----------------------------------------FVDVDD---- 151 (409)
T ss_pred HHHHHHHH--------------HHhCceee----------------------------------------eechhh----
Confidence 32211110 00000000 001001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.++ .++-+|++|.. .+.-.-++ + +++|+++|+++|+++|+|+...+. .-++-+.
T Consensus 152 -~~~~~~~i~--------~~t~~V~~ESP-sNPll~v~-D---I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~ 211 (409)
T KOG0053|consen 152 -LKKILKAIK--------ENTKAVFLESP-SNPLLKVP-D---IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLP 211 (409)
T ss_pred -HHHHHHhhc--------cCceEEEEECC-CCCccccc-c---HHHHHHHHhhCCCEEEEeCCcCcc------cccChhh
Confidence 233444442 36889999986 55544333 3 899999999999999999987543 2334444
Q ss_pred CCCcEEEe--ccccCCCCCC-ceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHH
Q 002941 680 CVPDIACY--GKLLTGGVIP-LAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~P-igav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL 740 (863)
.-.|||+- .|-++|.-=- .|.++.+ +++...+... ...--+..+|..|--..-.|
T Consensus 212 lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~------~~~lg~~~~p~~~~ll~Rgl 270 (409)
T KOG0053|consen 212 LGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFL------QEDLGWCEDPFDLFLLSRGL 270 (409)
T ss_pred cCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHH------HHHhcCCCCHHHHHHHhcCc
Confidence 45899975 5988763222 2345554 7777766531 11122345666665544333
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.064 Score=60.73 Aligned_cols=189 Identities=12% Similarity=0.091 Sum_probs=112.8
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|+..+ ++.+.+++++|+|=+= .+ .+..+-.+.| |++..| |+|| . --++.++.+++.++
T Consensus 155 stGv~~~---------~~~~~~~~llvvD~sS-~~--~s~pid~~~~----dvi~agsQKnlg-P-~Gltvvivs~~al~ 216 (364)
T PRK12462 155 VEGLQFP---------DAAGLPDSPLIADMSS-DF--MSRPFDVEAY----GMVYAHAQKNLG-P-AGVTVAIIRRALLE 216 (364)
T ss_pred CceEecC---------cccccCCCeEEEEcCc-hh--hCCCCChHHc----cEEEeeccccCC-C-CceEEEEECHHHHh
Confidence 3566664 3344579999999664 34 2334445555 888765 9997 2 33667888999887
Q ss_pred hhhcCCccce------eecccCCCc-cHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCC----Ce
Q 002941 710 SFVGDSKLKA------LLHGHSYSA-HALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHR----TV 777 (863)
Q Consensus 710 ~l~~~~~~~~------~~~~~T~~~-~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p----~v 777 (863)
......+ .. ....++|.. +...+-+...+|+++.++ +=++.+.++.++..+.+.+ .+++.+ .+
T Consensus 217 ~~~~~~p-~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~----~id~~~~~~~~~ 291 (364)
T PRK12462 217 RVPDTLP-PMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYA----TLDALNEVIDCH 291 (364)
T ss_pred hccccCC-chhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH----HHHhCCCcccCC
Confidence 6543111 00 012345543 445667788899999665 2245566666666654433 333333 22
Q ss_pred eEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 778 QRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 778 ~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.+..-+..|.. +.+.++ ....+|.+.+.++|++--.+. +.+|.+.=-.++.|+++++++.+++.-+
T Consensus 292 ~~~~~RS~mnv~f~~~~~--------~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 292 AHRAARSTMNVAFRFRQP--------RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred CChhhcCcceEEEEcCCH--------HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 22222222222 333322 367889999999999874321 4588776567899999999988877543
|
|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0038 Score=77.66 Aligned_cols=76 Identities=8% Similarity=-0.102 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH
Q 002941 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (863)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~ 275 (863)
.+.+.+.++..+| |+|||.+...+.+ ....-|+...+. ||+|+..+.-....+..+++.++
T Consensus 644 ~~~~~l~~l~~~y-------------D~IiID~pp~~~~-----~d~~~l~~~~D~-vl~v~~~~~~~~~~~~~~~~~l~ 704 (754)
T TIGR01005 644 AMFSLVIHARLYS-------------DCVVVDVGTADPV-----RDMRAAARLAII-MLLVTAYDRVVVECGRADAQGIS 704 (754)
T ss_pred HHHHHHHHHHhhC-------------CEEEEcCCCcchh-----HHHHHhhhhCCe-EEEEEEeCceeHHHHHHHHHHHH
Confidence 3445555655666 9999999443222 223334444443 56888877778888889999999
Q ss_pred hCCCcEEEEEEcCCC
Q 002941 276 LRGYDVVAVVFEDHG 290 (863)
Q Consensus 276 ~~~~~v~gvi~n~~~ 290 (863)
..+.++.|||+|++.
T Consensus 705 ~~~~~~~GvvlN~~~ 719 (754)
T TIGR01005 705 RLNGEVTGVFLNMLD 719 (754)
T ss_pred hcCCceEEEEecCCC
Confidence 888999999999874
|
The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.022 Score=61.63 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|=|||+ .|+|||+++-.|.+.|. .+|.+|+.+-
T Consensus 52 ~viGITG~-PGaGKSTli~~L~~~l~-----~~G~rVaVlA 86 (323)
T COG1703 52 HVIGITGV-PGAGKSTLIEALGRELR-----ERGHRVAVLA 86 (323)
T ss_pred cEEEecCC-CCCchHHHHHHHHHHHH-----HCCcEEEEEE
Confidence 34789999 89999999999999999 9999998764
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.027 Score=65.20 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++++|. +|+|||++++.|+..|. ++|++|...-
T Consensus 95 p~vI~lvG~-~GsGKTTtaakLA~~L~-----~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGL-QGSGKTTTAAKLARYFK-----KKGLKVGLVA 130 (437)
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 346888897 99999999999999998 8898888764
|
|
| >KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0061 Score=64.96 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=63.2
Q ss_pred CCceEEEeCCCcccccCCCC--CcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC-------
Q 002941 220 MEILCIVETAGGVASPGPSG--SLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG------- 290 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~--~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~------- 290 (863)
+-|++||.+ -|.+++ .+.++.++.- --.|+|.....-++..+.-.+.++++-+++|+|+|-|-..
T Consensus 156 ~lDyLviDt-----PPGtsDehls~~~~~~~~-~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~ 229 (300)
T KOG3022|consen 156 ELDYLVIDT-----PPGTSDEHLSLVQFLRES-DGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCG 229 (300)
T ss_pred CcCEEEEeC-----CCCCChhhhheeeccccc-CceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCC
Confidence 459999998 444322 2333444332 1268899999888999999999999999999999999431
Q ss_pred -------CCCHHHHHHhhcCCCCeee-cCCCCCCC
Q 002941 291 -------LVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 291 -------~~~~~~~~~~~~~~~pvl~-~p~~~~~~ 317 (863)
...-+.+.+. .++|.|| ||-.+.+.
T Consensus 230 ~~~~iF~~gGg~~l~~~--~glp~Lg~iPld~~i~ 262 (300)
T KOG3022|consen 230 HSTNIFGSGGGERLAEE--LGLPLLGSLPLDPLIA 262 (300)
T ss_pred CcceeccCccHHHHHHH--cCCCeEeecCCCHHHH
Confidence 1123444454 5899999 99877654
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.053 Score=61.78 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=44.9
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCCCceeeeccHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIPLAATLATNA 706 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~Pigav~~~~~ 706 (863)
..|.+=+ +++|.++|++|++.|-+|-++.|....-+.+-.-..|+ ..|-+++ -|.++.- ++.|+++.+.+
T Consensus 206 ~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l~r~~ 278 (373)
T PF00282_consen 206 NTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP-YGCGVLLVRDK 278 (373)
T ss_dssp TTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEEESSG
T ss_pred ccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-ccceeEEeecc
Confidence 3455543 89999999999999999999877322222111222344 4688877 4888776 68888888754
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0052 Score=64.53 Aligned_cols=64 Identities=23% Similarity=0.069 Sum_probs=47.6
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhc-C---CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPF-R---LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l-~---~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~ 290 (863)
+|++||.+. |. ......-+...+ + --+|+|+....-++..+...++.++..|+++.|+|+|++.
T Consensus 114 yD~IIiD~p-----p~-~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~ 181 (217)
T cd02035 114 YDVIVFDTA-----PT-GHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred CCEEEECCC-----Cc-hHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 599999993 32 111111122333 2 2489999999999999999999999999999999999873
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.23 Score=58.19 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCeEEEecccccccc-cCCcchhh-hcCC-CCcEEEec--cccCCCCCCceeeeccHH--HHHhhhcCC
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWR-LGVETTAD-LLGC-VPDIACYG--KLLTGGVIPLAATLATNA--VFDSFVGDS 715 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGR-tG~~~a~e-~~gv-~PDivt~s--KgLggG~~Pigav~~~~~--i~~~l~~~~ 715 (863)
+++|.++|++||+.+.+|-+..||-. +-. -... -+++ ..|-|+++ |-+.. .++.|+++.+++ +.+.+....
T Consensus 226 i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~-~~~~~~f~l~~vdSIt~d~HK~g~a-P~~~G~il~rd~e~l~~~~~~~~ 303 (460)
T COG0076 226 IEELADIAEEYGIWLHVDAAFGGFLLPFLE-PDGRWDFGLEGVDSITVDGHKYGLA-PIGCGVVLFRDEEALRRILIFAD 303 (460)
T ss_pred HHHHHHHHHHcCCcEEEEccccceeecccC-ccchhhcCCCCceEEEECcccccCC-CCCceEEEEECHHHhhhhhhccc
Confidence 99999999999999999999987732 100 0011 1344 46778775 54332 356677888755 444433111
Q ss_pred cc------ceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 716 KL------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 716 ~~------~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
.. ..+...+|- .....++..++|..+-.+++.
T Consensus 304 ~yl~~~~~~~~ti~~sr--~~~~~~~~~~~l~~lG~eGy~ 341 (460)
T COG0076 304 YYLPGGGIPNFTILGSR--PGRQALALYANLRRLGREGYR 341 (460)
T ss_pred ccCCCCCcCceeEeecc--chHHHHHHHHHHHHhCHhHHH
Confidence 10 001111111 122566677788877545543
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=68.07 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=52.8
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~----~~~~~v~gvi~n~~~~~~~~ 295 (863)
++|++||.+.|++..+.. ...+...+ -||+|+....-.+..+...++.++ ..++++.|+|+|++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~~~-----~~al~~aD-~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~ 186 (267)
T cd02032 115 EYDVILFDVLGDVVCGGF-----AAPLNYAD-YALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TD 186 (267)
T ss_pred cCCEEEEeCCCCcccccc-----hhhhhhcC-EEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HH
Confidence 469999999766544421 11122223 355566666555555444444433 3577889999998743 22
Q ss_pred HHHHhhc-CCCCeee-cCCCCCCC
Q 002941 296 PLMSYLR-NRVPVLV-LPPLPQDS 317 (863)
Q Consensus 296 ~~~~~~~-~~~pvl~-~p~~~~~~ 317 (863)
.+++.++ .+.|+++ ||......
T Consensus 187 ~i~~~~~~~~~~vl~~Ip~~~~v~ 210 (267)
T cd02032 187 LIDKFVEAVGMPVLAVLPLIEDIR 210 (267)
T ss_pred HHHHHHHhCCCCEEEEecCCcccc
Confidence 3333332 3788998 88866654
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=63.74 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=32.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|.| -.||||||+|..|+.+|. ++|+||...-
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La-----~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALA-----EMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 56788886 899999999999999999 8999998775
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=63.85 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=52.8
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~----~~~~~v~gvi~n~~~~~~~~ 295 (863)
++|++||.+.|++...... ..+...+ -||+|+....-++..+...++.++ ..++++.|+|+|+... ..
T Consensus 117 ~yD~viIDt~g~~~~~~~~-----~~l~~AD-~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--~~ 188 (270)
T PRK13185 117 DYDVILFDVLGDVVCGGFA-----APLQYAD-YALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--TD 188 (270)
T ss_pred cCCEEEEecCCCcccCccc-----chhhhCc-EEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--HH
Confidence 4699999996544322100 0011111 267777777666666655555543 3467789999998642 23
Q ss_pred HHHHhhc-CCCCeee-cCCCCCCC
Q 002941 296 PLMSYLR-NRVPVLV-LPPLPQDS 317 (863)
Q Consensus 296 ~~~~~~~-~~~pvl~-~p~~~~~~ 317 (863)
.+++.++ -+.++++ ||......
T Consensus 189 ~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 189 LIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred HHHHHHHHcCCCEEEECCCCcccC
Confidence 3334332 3788998 88765543
|
|
| >COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=62.93 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHH
Q 002941 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (863)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (863)
.+.+.....++++...+ |++|+..-.|+.-+. ..-+... --+|+|.....-++..++.++
T Consensus 97 ~~~~~~~~~~~~l~~~~-------------D~iliD~~aGl~~~~-----~~~~~~s--d~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 97 LDPEDLEDVIKELEELY-------------DYILIDTGAGLSRDT-----LSFILSS--DELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred cCHHHHHHHHHHHHhcC-------------CEEEEeCCCCccHHH-----HHHHHhc--CcEEEEeCCCcchHHHHHHHH
Confidence 45566666666666655 999999966655442 2222222 457788888999999999999
Q ss_pred HHHHhCCCcEEE--EEEcCCC--CCC---HHHHHHhhcCCCCeee-cCCCC
Q 002941 272 ESLKLRGYDVVA--VVFEDHG--LVN---EVPLMSYLRNRVPVLV-LPPLP 314 (863)
Q Consensus 272 ~~~~~~~~~v~g--vi~n~~~--~~~---~~~~~~~~~~~~pvl~-~p~~~ 314 (863)
+.+...++...+ +|+|++. .+. ...+.+.. ..+|.+. +|+++
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~-~~~~~~~~i~~~~ 206 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVV-KQVPVLQVIPFDP 206 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHH-HhCCceeEeccCh
Confidence 999999999999 9999983 222 22233332 2455666 89888
|
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=63.99 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|+ --.|||||+++..|+.+|. ++|+||..+-
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La-----~~G~rVllvD 36 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALS-----TMGNKILLVG 36 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHH-----hhCCCeEEEe
Confidence 4566677 4899999999999999999 8999998775
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.017 Score=56.21 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=54.8
Q ss_pred ceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhC-CCcEEEEEEcCCCCCC-HHHHHH
Q 002941 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-GYDVVAVVFEDHGLVN-EVPLMS 299 (863)
Q Consensus 222 d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~-~~~v~gvi~n~~~~~~-~~~~~~ 299 (863)
|++||.+.+++ +.....+++..+. +|+|+....-++..+...++.+... +..-.++|+|++.... ...+.+
T Consensus 46 d~VIiD~p~~~------~~~~~~~l~~aD~-vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~~~~ 118 (139)
T cd02038 46 DYIIIDTGAGI------SDNVLDFFLAADE-VIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFK 118 (139)
T ss_pred CEEEEECCCCC------CHHHHHHHHhCCe-EEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHHHHH
Confidence 99999996543 2234566666664 7788888888888877777777543 3456789999984332 222222
Q ss_pred --------hhcCCCCeee-cC
Q 002941 300 --------YLRNRVPVLV-LP 311 (863)
Q Consensus 300 --------~~~~~~pvl~-~p 311 (863)
+...++|.+| ||
T Consensus 119 ~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 119 RLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHHHHHhCCChhhceecC
Confidence 3334688888 76
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0096 Score=61.48 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|.||+--.||||||.|+.|..+|. +.|+||...-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA-----~~GkKv~liD 38 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALA-----QLGKKVVLID 38 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHH-----HcCCeEEEEe
Confidence 45889999999999999999999999 8999998765
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.03 Score=60.95 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+.++| -+|+|||++++-|+..|. ++|++|...-
T Consensus 72 ~~vi~l~G-~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 72 PNVILFVG-VNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 45788888 599999999999999998 8898987765
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.16 Score=56.99 Aligned_cols=223 Identities=13% Similarity=0.136 Sum_probs=123.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH-HHHcCCeEEEeccccccccc-CC--------
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRL-GV-------- 671 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel-c~~~gilLI~DEV~TGfGRt-G~-------- 671 (863)
+.+|+.+.+ ...|-++++=|.-.+..| ++.+.+-.++|..+ +...+.-++-|.+++ +--. +.
T Consensus 161 D~Ve~LV~~------D~svKGiWcVP~ySNPtG-~tySde~vrrlA~m~~AA~DFRI~WDNAY~-vHhL~~~~~~~~~~n 232 (425)
T PF12897_consen 161 DMVEELVAE------DPSVKGIWCVPKYSNPTG-ITYSDEVVRRLAAMKTAAPDFRIFWDNAYA-VHHLYDEEPRDALLN 232 (425)
T ss_dssp HHHHHHTHT------STTEEEEEE-SSS-TTT------HHHHHHHHHS--SSTT-EEEEE-TTT-T-BSSSSSS------
T ss_pred HHHHHHHhc------CCccceEEeCCCccCCCC-ccCCHHHHHHHhcCCcCCcCeEEEeecCce-EeeccccccchhhhH
Confidence 456665532 457999999998555566 56688888899888 447899999999984 3222 21
Q ss_pred -cchhhhcCCCCcEE----EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 672 -ETTADLLGCVPDIA----CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 672 -~~a~e~~gv~PDiv----t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
.-.++..| .||.+ ..||---.| .-++++.++++-++.+... ....|-+.+-+....-..-++-.+ .
T Consensus 233 il~~~~~AG-npdrv~~F~STSKITf~G-aGva~~aaS~~Nl~~~~~~------~~~~tIgpdKvNQLRHvrff~d~~-g 303 (425)
T PF12897_consen 233 ILDACAKAG-NPDRVYVFASTSKITFPG-AGVAFFAASEANLAWIKKH------LSVQTIGPDKVNQLRHVRFFKDAE-G 303 (425)
T ss_dssp HHHHHHHTT--TTSEEEEEESTTTS-TT-SS-EEEEE-HHHHHHHHHH------HHHH-S---HHHHHHHHHHHHSHH-T
T ss_pred HHHHHHHcC-CCCeEEEEecccccccCC-cceeeeecCHHHHHHHHHH------hcCceeCccHHHHHHHHHHhcChh-h
Confidence 11222333 57754 347844333 3588999998888877642 233444444454443333333211 2
Q ss_pred hhHHhHHHHHHHHHHHHHHHH---HHHHh-cCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe
Q 002941 747 QTNHNIIPERRILRELWDLEL---IQQIS-SHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 821 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l---~~~~~-~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p 821 (863)
++.+++++..+.++-.|...+ .+.+. .......... -|.|+.++..+. .+.++.+.+.+.||.+.|
T Consensus 304 Gv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G---------~AkrvV~lakeAGV~LT~ 374 (425)
T PF12897_consen 304 GVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG---------TAKRVVELAKEAGVALTP 374 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT----------HHHHHHHHHHTTEE---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC---------hHHHHHHHHHHhCceeCC
Confidence 567777777777776665432 22333 3334444444 467888888764 488999999999999986
Q ss_pred cC-----------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 822 LG-----------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 822 ~g-----------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.| ..||+.| ..-+.||++.+++.+.-++.
T Consensus 375 AGAtfPyg~DP~D~nIRiAP-S~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 375 AGATFPYGKDPRDSNIRIAP-SYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp TTTTSGGG--TTS-EEEE---SSS-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 43 6899884 45678899999999977664
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.032 Score=64.26 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..++++|. +||||||+++-|+..|+ ++|++|...-
T Consensus 101 ~vi~lvG~-~GvGKTTtaaKLA~~l~-----~~G~kV~lV~ 135 (429)
T TIGR01425 101 NVIMFVGL-QGSGKTTTCTKLAYYYQ-----RKGFKPCLVC 135 (429)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEc
Confidence 35888886 99999999999999998 8898887664
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.068 Score=61.83 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-CCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (863)
.++++| -+|+|||++++-|+..|. ++ |++|...-
T Consensus 102 vI~~vG-~~GsGKTTtaakLA~~l~-----~~~G~kV~lV~ 136 (433)
T PRK10867 102 VIMMVG-LQGAGKTTTAGKLAKYLK-----KKKKKKVLLVA 136 (433)
T ss_pred EEEEEC-CCCCcHHHHHHHHHHHHH-----HhcCCcEEEEE
Confidence 577777 599999999999999998 77 88887765
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.018 Score=63.33 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=29.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|+| -.|||||+++.-|+.+|. ++|+||..+-
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La-----~~G~rVLlID 35 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALA-----RRGKKVLQIG 35 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 77888 899999999999999999 8999987664
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.55 Score=51.99 Aligned_cols=228 Identities=10% Similarity=0.031 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh---
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--- 677 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~--- 677 (863)
++.|++.+++ .+.+.|+-|++--. .+..|-.+.+-.-++++++||++|||.+++|-.... - -..|--+.
T Consensus 171 ~~kLe~lide----vG~~nvp~I~~tiT-~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rfa--E-NaYFIk~rE~g 242 (471)
T COG3033 171 LEKLERLIDE----VGADNVPYIVLTIT-NNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFA--E-NAYFIKQREPG 242 (471)
T ss_pred HHHHHHHHHH----hCcccCcEEEEEEe-ccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhh--h-hhhhhhhcCcc
Confidence 3567777765 46677765555443 444555777888899999999999999999965421 1 11222111
Q ss_pred ---cCC---------CCcEEEec-cccCCCCCCceeee-ccHH----HHHhhhcCCccceee-cccCCCc----cHHHHH
Q 002941 678 ---LGC---------VPDIACYG-KLLTGGVIPLAATL-ATNA----VFDSFVGDSKLKALL-HGHSYSA----HALGCA 734 (863)
Q Consensus 678 ---~gv---------~PDivt~s-KgLggG~~Pigav~-~~~~----i~~~l~~~~~~~~~~-~~~T~~~----~pla~A 734 (863)
+-+ ..|-.|+| |- .|..++|..+ .+++ +...+... ..+. ...||+| ...++|
T Consensus 243 Yrd~sI~~IarEm~sYaD~~~mS~KK--D~lvnmGGfl~~~D~~~fDvy~~~~~~---~V~~eG~~tYGgl~GrdmealA 317 (471)
T COG3033 243 YRDWSIEEIAREMYSYADGCTMSAKK--DGLVNMGGFLCFKDDSFFDVYEECRTL---VVVQEGFPTYGGLAGRDMEALA 317 (471)
T ss_pred cccccHHHHHHHHHhhhhhheeeccc--cceeccccEEEecCccHHHHHHHHHhh---eEeeccccccCcccchhHHHHH
Confidence 111 24666664 31 1224444444 4444 44433321 1111 2234443 444555
Q ss_pred HHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEE-EccCCcCCCCchHHHHHHHHHHH
Q 002941 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIE-LQAAGCNAGYGSLYAASLLKKLR 813 (863)
Q Consensus 735 AalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ie-l~~~~~~~~~~~~~~~~l~~~l~ 813 (863)
+++ ..--+.+|+..-.+..++|.+.|.+. .-|++..+-|.+.++-.. +-+.-..+.|+ +..++-+|.
T Consensus 318 vGL---~e~~~~~yl~~Rv~Qv~YL~~~l~~~------GVpi~~paGGHavfvda~~~lphip~eqFp---aqala~ely 385 (471)
T COG3033 318 VGL---REGVNFDYLAHRVAQVQYLADGLEEA------GVPIVQPAGGHAVFVDAGKFLPHIPAEQFP---AQALACELY 385 (471)
T ss_pred HHH---HHhcCcHHHHHHHHHHHHHHHHHHhc------CCeeEecCCCceEEeehhhhcCCCChhhCc---HHHHHHHHH
Confidence 443 22224555555456667777755332 345555565655544321 11111111222 233333333
Q ss_pred -HCCcEE-------Eec-----------CCEEEEecCCC-CcHHHHHHHHHHHHHHHHHH
Q 002941 814 -EDGVYM-------RPL-----------GNVIYLMCGPC-SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 814 -e~GV~~-------~p~-----------g~~lr~~ppl~-~t~eeid~~v~~L~~~l~~l 853 (863)
+.||-. ... -+.+|++.|-. -|.+++|.+++++....+.-
T Consensus 386 ~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 386 KEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred HHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence 445433 211 16788877765 49999999999998877643
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=51.34 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++|+|.. |+|||+++..|++.|. +.|++|..++
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~-----~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALA-----KRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHH-----HCCCeEEEEC
Confidence 5788887 9999999999999998 7787776666
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0042 Score=62.03 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.|.|+|. +++|||++.--|++.|+ .+|++|++.|=
T Consensus 2 ~~Il~ivG~-k~SGKTTLie~lv~~L~-----~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGY-KNSGKTTLIEKLVRKLK-----ARGYRVATVKH 38 (161)
T ss_pred CcEEEEEec-CCCChhhHHHHHHHHHH-----hCCcEEEEEEe
Confidence 677999999 89999999999999999 99999999994
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.43 Score=56.36 Aligned_cols=66 Identities=21% Similarity=0.143 Sum_probs=45.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCcchhhhcCCCCcEEEec--cccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVETTADLLGCVPDIACYG--KLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~~a~e~~gv~PDivt~s--KgLgg 693 (863)
.++||..|. -.|+..- ++++.+.+.++++.+..||+| |+-+. ..++.-....-..|++|-| |-+++
T Consensus 168 k~~vitnpT---YdGv~~n----~~~i~~~~~~~~a~v~~deah-~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~a 236 (557)
T COG1982 168 KLAVITNPT---YDGVCYN----LRKIVELLHHYGAWVLYDEAH-PAHFDFSPMLPESALNGGADFVTQSTHKLLAA 236 (557)
T ss_pred eeEEEecCc---cceEeec----HHHHHHHHhhcCceEEhhhcC-cccccccccCcchhhhcCceEEEechhhhhhh
Confidence 789999996 3576666 889999999999999999998 55222 1122222222346788877 55554
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.08 Score=61.22 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=46.7
Q ss_pred CceEEEeCCCcccccCCCCCcHhHH---hhhc-CCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC---
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDL---YRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN--- 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dl---a~~l-~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~--- 293 (863)
+|+|||.++|... . +.....++ .+.+ --.++||+++..| ..++.....+. ..+++.|+|+|+.+.+.
T Consensus 183 ~DvVIIDTaGr~~--~-d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 183 FDVVIVDTAGRLQ--I-DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGDARGG 256 (428)
T ss_pred CCEEEEeCCCccc--c-CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCccccc
Confidence 5999999999543 2 22222222 2222 2347999997644 33333333333 34678999999885321
Q ss_pred -HHHHHHhhcCCCCeeec
Q 002941 294 -EVPLMSYLRNRVPVLVL 310 (863)
Q Consensus 294 -~~~~~~~~~~~~pvl~~ 310 (863)
...+... +++|+.-+
T Consensus 257 ~~lsi~~~--~~~PI~fi 272 (428)
T TIGR00959 257 AALSVRSV--TGKPIKFI 272 (428)
T ss_pred HHHHHHHH--HCcCEEEE
Confidence 2223333 58998753
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.023 Score=63.60 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=30.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.++|. +|+|||++++.|+..|+ ..|++|+..-
T Consensus 140 ~~vi~~~G~-~GvGKTTtiakLA~~l~-----~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVGV-NGTGKTTTIAKLAYYLK-----KNGFSVVIAA 175 (336)
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 346888885 99999999999999998 7888887743
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.048 Score=56.35 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|-|++.-.|||||+++..|+.+|. ++|++|...-
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la-----~~g~~vlliD 36 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLH-----ADGHKVLLVD 36 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 5789999999999999999999999 8899987765
|
|
| >TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.007 Score=60.25 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=34.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCC
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY 84 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~ 84 (863)
+.|+|. +|+|||+++..|++.|+ .+|++|+++|+...+.
T Consensus 2 i~i~G~-~gsGKTtl~~~l~~~l~-----~~G~~V~viK~~~~~~ 40 (155)
T TIGR00176 2 LQIVGP-KNSGKTTLIERLVKALK-----ARGYRVATIKHDHHDF 40 (155)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEecccccc
Confidence 578888 69999999999999998 8899999999865543
|
This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.051 Score=57.73 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=34.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|.+.-.|||||+++..|+..|. ++|++|..+-
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la-----~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA-----SDGKRVALFE 37 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 567999999999999999999999999 8999998776
|
|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.021 Score=61.80 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~----~~~~~v~gvi~n~~~~~~~~ 295 (863)
++|++||.+.|++..+.... .....+. +|+|+....-++..+...++.++ ..++++.|||+|++... .
T Consensus 115 ~yD~ViID~~~~~~~~~~~~-----~l~aAD~-vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~--~ 186 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGFAT-----PLQYADY-ALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT--D 186 (268)
T ss_pred cCCEEEEecCCccccCcccc-----chhhcCE-EEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH--H
Confidence 35999999976654432110 1112222 55566666656665555555443 24678899999988443 2
Q ss_pred HHHHhhc-CCCCeee-cCCCCC
Q 002941 296 PLMSYLR-NRVPVLV-LPPLPQ 315 (863)
Q Consensus 296 ~~~~~~~-~~~pvl~-~p~~~~ 315 (863)
.+.+..+ .+.|+++ ||....
T Consensus 187 ~~~~~~~~~~~~vl~~I~~~~~ 208 (268)
T TIGR01281 187 LIERFNERVGMPVLGVVPDLEV 208 (268)
T ss_pred HHHHHHHHcCCCEEEEcCCChH
Confidence 2222221 3788998 776544
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.026 Score=61.46 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|++|.|.| -.|||||++|..|+.+|. ++|+||..+-
T Consensus 1 ~~~i~~~g-KGGVGKTT~a~nLA~~La-----~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYG-KGGIGKSTTVCNIAAALA-----ESGKKVLVVG 36 (279)
T ss_pred CcEEEEEC-CCCCcHHHHHHHHHHHHH-----hCCCEEEEEe
Confidence 67888998 899999999999999999 9999997764
|
|
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.058 Score=58.59 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=30.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|.|.| -.||||||+|..|+.+|. ++|++|..+-
T Consensus 2 ~ia~~g-KGGVGKTT~a~nLA~~La-----~~G~~VlliD 35 (275)
T TIGR01287 2 QIAIYG-KGGIGKSTTTQNIAAALA-----EMGKKVMIVG 35 (275)
T ss_pred eeEEeC-CCcCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 477888 899999999999999999 8999998765
|
This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. |
| >PRK13236 nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.029 Score=61.86 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+.|-+.| -.|||||+++.-|+.+|. ++|+||..+-
T Consensus 5 ~~~~~~~~G-KGGVGKTt~a~NLA~~La-----~~G~rVLliD 41 (296)
T PRK13236 5 NIRQIAFYG-KGGIGKSTTSQNTLAAMA-----EMGQRILIVG 41 (296)
T ss_pred CceEEEEEC-CCcCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 355677777 899999999999999999 8999998886
|
|
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.054 Score=57.51 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|.|++.-.|+|||+++..|+.+|. ++|++|...-
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la-----~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK-----LLGEPVLAID 37 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999998 8899998776
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.019 Score=57.48 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=36.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccC
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (863)
|+.+.|+|. +|+|||+++..|++.|. .+|++|+++|.-..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~-----~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALS-----ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEEecCCc
Confidence 578999999 69999999999999998 899999999965443
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.091 Score=52.80 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|. +|+|||+++..|+..+. +.|.+|.++-
T Consensus 3 ~~~~G~-~G~GKTt~~~~la~~~~-----~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGL-QGVGKTTTAAKLALYLK-----KKGKKVLLVA 35 (173)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 456666 99999999999999998 7888888776
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.044 Score=59.16 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=51.1
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHh-hhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC-HHHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLY-RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN-EVPLM 298 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla-~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~-~~~~~ 298 (863)
+|+|||.+.|++.... ....++ ...+ -+|+|+....-++..+-..++.++.-+.++.++|.|...... .+.+.
T Consensus 114 yD~ViIDt~~~~~~~~----~~~~~~~~aaD-~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~ 188 (264)
T PRK13231 114 IDVVIYDVLGDVVCGG----FSVPLREDYAD-EVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVS 188 (264)
T ss_pred CCEEEEecCCCceEcc----ccccccccccc-eeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHH
Confidence 4999999966442111 000000 1112 467777777777777777777766544567788888653222 22333
Q ss_pred Hhhc-CCCCeee-cCCCCCC
Q 002941 299 SYLR-NRVPVLV-LPPLPQD 316 (863)
Q Consensus 299 ~~~~-~~~pvl~-~p~~~~~ 316 (863)
+..+ -+.++++ ||.....
T Consensus 189 ~l~~~~~~~vl~~I~~~~~v 208 (264)
T PRK13231 189 EFASRIGSRIIGVIPRSNLV 208 (264)
T ss_pred HHHHHhCCCeEEeCCCCHHH
Confidence 3222 2677887 7775544
|
|
| >PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.01 Score=64.89 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.+.+.||+..+||-+.+..|.++|+ ++|+++.+.=
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~-----~~G~~a~fva 148 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR-----ERGINAGFVA 148 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH-----HcCCCceEEe
Confidence 4678999999999999999999999999 9999998875
|
The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A. |
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.058 Score=58.33 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.|-|++.-.|||||++++.|+.+|. ++|++|...-
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la-----~~g~~vllvD 38 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLA-----QKGKKTVVID 38 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 367999999999999999999999998 8899988765
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.079 Score=59.06 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=109.9
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhc-CCCCcEE---EeccccC--C
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLL-GCVPDIA---CYGKLLT--G 693 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~-gv~PDiv---t~sKgLg--g 693 (863)
.++=.+ +++..|+.+ +.+-|++|.++-++.|.+-++|=++-|||.-.. .++...+ ...|-++ .|||.+| |
T Consensus 175 vLLH~C-cHNPTG~D~-t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYg 252 (396)
T COG1448 175 VLLHGC-CHNPTGIDP-TEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYG 252 (396)
T ss_pred EEEecC-CCCCCCCCC-CHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhh
Confidence 344455 699999665 677889999999999999999999999964321 1222221 1233344 3689876 2
Q ss_pred CCCC---ceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH-------HHHHHHHHHHH
Q 002941 694 GVIP---LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI-------IPERRILRELW 763 (863)
Q Consensus 694 G~~P---igav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l-------~~~~~~l~~~l 763 (863)
-. ++++.-+++.++.+...- ....-.+|+..|.-=|+..++ +|.++++.+.. +++...++..|
T Consensus 253 --ERVGa~~vva~~~~~a~~v~sql---k~~iR~~ySnPP~~Ga~vva~--IL~~p~Lra~W~~El~~Mr~Ri~~mR~~l 325 (396)
T COG1448 253 --ERVGALSVVAEDAEEADRVLSQL---KAIIRTNYSNPPAHGAAVVAT--ILNNPELRAEWEQELEEMRQRILEMRQAL 325 (396)
T ss_pred --hccceeEEEeCCHHHHHHHHHHH---HHHHHhccCCCchhhHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 344555666666554210 012335666555433333332 34565544333 33333444444
Q ss_pred HHHHHHHHhc--CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCCcHHHHH
Q 002941 764 DLELIQQISS--HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 764 ~~~l~~~~~~--~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~t~eeid 840 (863)
.+.|.+.... ...|.. -.|+|.-.-+ +.+-..+|+ +.||++...| ++-+ ..+++..|+
T Consensus 326 v~~L~~~~~~~~f~~i~~--Q~GMFsy~Gl-------------s~~QV~rLree~~IY~v~sG-Ri~v---aGl~~~ni~ 386 (396)
T COG1448 326 VDALKALGAPRNFDFIIS--QRGMFSYTGL-------------SPEQVDRLREEFGIYLVASG-RINV---AGLNTSNID 386 (396)
T ss_pred HHHHHhhCCCcccchHhh--cCceeecCCC-------------CHHHHHHHHHhccEEEecCC-eeee---ccCChhhHH
Confidence 3333332222 222322 3343332222 222344455 6799998776 3333 367899999
Q ss_pred HHHHHHHHH
Q 002941 841 QLLLKLYQR 849 (863)
Q Consensus 841 ~~v~~L~~~ 849 (863)
.+.+++.++
T Consensus 387 ~va~ai~~v 395 (396)
T COG1448 387 YVAKAIAAV 395 (396)
T ss_pred HHHHHHHhh
Confidence 999888765
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.34 Score=54.78 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccce
Q 002941 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKA 719 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~ 719 (863)
++++.++|++||+++|+|..- |. +.-.-.. -+.+..-+|+|+|| |-|+| -.-|.+++++++++.+....
T Consensus 176 ~~~l~~ia~~~~lpvivD~aS-g~-~v~~e~~l~~~la~GaDLV~~SgdKllgG--PqaGii~GkKelI~~lq~~~---- 247 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLAS-GA-LVDKEPDLREALALGADLVSFSGDKLLGG--PQAGIIVGKKELIEKLQSHP---- 247 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCC-cc-ccccccchhHHHhcCCCEEEEecchhcCC--CccceEechHHHHHHHHhhh----
Confidence 788999999999999999765 33 2212222 23334568999996 77775 33556899999999887632
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChh
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
.....-..+..+|+..++|+.+..++
T Consensus 248 --l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 248 --LKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred --hhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 23344567889999999999887654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.12 Score=57.71 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.++| -+|+||||+++.|+..+. .+|.+|...-
T Consensus 114 ~~vi~lvG-pnGsGKTTt~~kLA~~l~-----~~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVG-VNGVGKTTTIGKLAHKYK-----AQGKKVLLAA 149 (318)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 34688899 599999999999999998 7888887654
|
|
| >COG3367 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.073 Score=58.12 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=34.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+++.||+..+||-+.+.-|-++++ .+|+++++.-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~-----e~G~~a~fva 184 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR-----EEGIKAGFVA 184 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH-----HhCCccceEe
Confidence 458999999999999999999999999 8999998876
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.095 Score=59.52 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|.|. +|+|||+..+.|+..|. .+|++|++.-
T Consensus 242 ~vI~LVGp-tGvGKTTTiaKLA~~L~-----~~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 276 (436)
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 56899999 99999999999999998 8899998765
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.3 Score=55.90 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 805 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 805 ~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.++.+.+.++||.++.. ++.++++..-.+|++||+.+++.+.
T Consensus 383 ~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 383 SSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 567899999999998865 4788998888999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.28 Score=54.18 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+.|+|. +|+|||+++..|...+. ++|++|..+.
T Consensus 34 ~~~i~i~G~-~G~GKttl~~~l~~~~~-----~~~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGT-PGAGKSTLLEALGMELR-----RRGLKVAVIA 69 (300)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 556888887 99999999999999998 8899998776
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.013 Score=65.49 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCeEEEeccccc------ccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcC
Q 002941 643 QRILVKECQNRKIPVIFDEVFTG------FWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~TG------fGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~ 714 (863)
++++.+++++||+++|.|-.-.. +|-.+..-..+....-+|+|||| |-|||- --|.+++++++++.++.+
T Consensus 159 ~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 159 LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKH 236 (367)
T ss_dssp --HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhC
Confidence 89999999999999999954311 12222233333444458999996 788874 357889999999998753
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~ 745 (863)
. ..-.+-.+-+.+|+-.++|+.+.+
T Consensus 237 p------l~RalrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 237 P------LGRALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp H------HTTT-B--HHHHHHHHHHHHH---
T ss_pred C------CcceEeeCHHHHHHHHHHHHHHHH
Confidence 2 334456688999999999998753
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.19 Score=58.02 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=44.9
Q ss_pred ChhhHHHHHHHHhhccCCCCC-----CCCCC-CCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 9 YPDHHRRILLRLFHHSTFHPQ-----PLDLP-LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|-.++-..+++++..+..... |.-.+ .+|+.|-|+..-.|||||++|.-|+..|. .+|+||...-
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA-----~~G~rVLlID 157 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLA-----LQGYRVLAVD 157 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHH-----hcCCceEEEc
Confidence 555555566666654211111 11111 14678999999999999999999999998 8899997664
|
|
| >PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.025 Score=64.70 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.|-|+|. +|+||||+...|+..|+ ++|++|+..|=
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~-----~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIA-----ARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHH-----hCCCeEEEEec
Confidence 678999998 69999999999999999 99999999994
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.19 Score=59.19 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=46.4
Q ss_pred CceEEEeCCCcccccCCCCCcH---hHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-CHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQ---CDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NEVP 296 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~---~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-~~~~ 296 (863)
.|+|||.++|. .+... ... ..|......-.+||++...+ .......++.++. ..+.|+|||+.++. ....
T Consensus 429 ~DLVLIDTaG~--s~~D~-~l~eeL~~L~aa~~~a~lLVLpAtss-~~Dl~eii~~f~~--~~~~gvILTKlDEt~~lG~ 502 (559)
T PRK12727 429 YKLVLIDTAGM--GQRDR-ALAAQLNWLRAARQVTSLLVLPANAH-FSDLDEVVRRFAH--AKPQGVVLTKLDETGRFGS 502 (559)
T ss_pred CCEEEecCCCc--chhhH-HHHHHHHHHHHhhcCCcEEEEECCCC-hhHHHHHHHHHHh--hCCeEEEEecCcCccchhH
Confidence 39999999984 23211 111 11222234567788876643 3333334444443 46899999998543 3333
Q ss_pred HHH-hhcCCCCeeecC
Q 002941 297 LMS-YLRNRVPVLVLP 311 (863)
Q Consensus 297 ~~~-~~~~~~pvl~~p 311 (863)
+.+ ..+.++||..+-
T Consensus 503 aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 503 ALSVVVDHQMPITWVT 518 (559)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 332 223588887653
|
|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.18 Score=54.75 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|++ -.|||||++|..|+.+|. ++|+||..+-
T Consensus 1 m~~iav~~-KGGVGKTT~~~nLA~~La-----~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-KGGIGKSTTTQNTVAGLA-----EMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-CCCccHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 45677776 899999999999999999 8999998774
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.15 Score=58.17 Aligned_cols=85 Identities=16% Similarity=0.079 Sum_probs=46.9
Q ss_pred CceEEEeCCCcccccCCCCC--cHhHHhhhcCC--CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-CHH
Q 002941 221 EILCIVETAGGVASPGPSGS--LQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NEV 295 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~--~~~dla~~l~~--pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-~~~ 295 (863)
+|+|||.++|.. +.+... -...+....+. .++||.++..+. +.....++.+ ..+.+-|+|+-+.++. ..-
T Consensus 255 ~DlVLIDTaGr~--~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~~~~~~~--~~~~~~~~I~TKlDet~~~G 329 (388)
T PRK12723 255 FDLVLVDTIGKS--PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVKEIFHQF--SPFSYKTVIFTKLDETTCVG 329 (388)
T ss_pred CCEEEEcCCCCC--ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHh--cCCCCCEEEEEeccCCCcch
Confidence 499999999954 321100 11233333333 489999987762 2222222222 3567899999988543 222
Q ss_pred HHHHh-hcCCCCeeec
Q 002941 296 PLMSY-LRNRVPVLVL 310 (863)
Q Consensus 296 ~~~~~-~~~~~pvl~~ 310 (863)
.+-+. ...++|+.-+
T Consensus 330 ~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 330 NLISLIYEMRKEVSYV 345 (388)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 22222 1257888653
|
|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.1 Score=56.73 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCC-CCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~-~g~~v~~~K 78 (863)
+.|-|++ -.|||||+++.-|+.+|. + +|+||..+-
T Consensus 3 ~vIav~~-KGGVGKTT~a~nLA~~La-----~~~G~rvLliD 38 (275)
T PRK13233 3 RKIAIYG-KGGIGKSTTTQNTAAAMA-----YFHDKKVFIHG 38 (275)
T ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHH-----HhcCCeEEEec
Confidence 5677774 899999999999999998 7 599998764
|
|
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.19 Score=57.57 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=45.5
Q ss_pred CChhhHHHHHHHHhhccCCCC---CCCCCC-CCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 8 HYPDHHRRILLRLFHHSTFHP---QPLDLP-LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
=|.+++-+.+...+....... .+.-.+ .+++.|.|++.-.|||||++|..|+.+|. ++|++|...-
T Consensus 71 ~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 140 (387)
T TIGR03453 71 SYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLA-----LRGYRVLAID 140 (387)
T ss_pred eeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 356666666655554421111 111111 24678999999999999999999999998 8899997765
|
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.17 Score=57.64 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=33.8
Q ss_pred CCCCCCCCCC-eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 29 QPLDLPLSHP-TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 29 ~~~~~~~~~~-~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++.+....| .|+.+|- .|+||||.++=|+.+|+ ++|++|...-
T Consensus 91 ~~~~l~~~~P~vImmvGL-QGsGKTTt~~KLA~~lk-----k~~~kvllVa 135 (451)
T COG0541 91 SELNLAKKPPTVILMVGL-QGSGKTTTAGKLAKYLK-----KKGKKVLLVA 135 (451)
T ss_pred cccccCCCCCeEEEEEec-cCCChHhHHHHHHHHHH-----HcCCceEEEe
Confidence 3444432233 5888888 99999999999999999 8898887654
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.17 Score=57.32 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+.|+|. +|||||++.+.|+..+. ++|.+|++.-
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~-----~~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLL-----KQNRTVGFIT 241 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 456889997 69999999999999987 7888888754
|
|
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.078 Score=58.44 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+|+.|-|+ --.|||||+++.-|+.+|. ++|+||..+-
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la-----~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALV-----EMGQKILIVG 39 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46667676 6899999999999999999 9999998774
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.66 Score=52.52 Aligned_cols=222 Identities=11% Similarity=0.008 Sum_probs=106.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh---hhc
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLL 678 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~---e~~ 678 (863)
+.+|+.+++ .+++.+.+|+.-+- +..| + -++-+.++.++|++|||+.|+--++ |.--+-.+-.. ...
T Consensus 142 ~~ie~~i~~----~G~~~iLcvlttts--cfap-r--~~D~i~~IakiC~~~~IPhlvNnAY-gvQ~~~~~~~i~~a~~~ 211 (389)
T PF05889_consen 142 EAIEAKIEE----LGADNILCVLTTTS--CFAP-R--LPDDIEEIAKICKEYDIPHLVNNAY-GVQSSKCMHLIQQAWRV 211 (389)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEESS--TTTT-B------HHHHHHHHHHHT--EEEEGTT-TTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCCCCeEEEEEecC--ccCC-C--CCccHHHHHHHHHHcCCceEEccch-hhhHHHHHHHHHHHHhc
Confidence 445666653 35566777777663 3333 2 3345899999999999999999988 55000000000 012
Q ss_pred CCCC-cEEEecccc----CCCCCCceeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 679 GCVP-DIACYGKLL----TGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 679 gv~P-Divt~sKgL----ggG~~Pigav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|..| ++--+.|-+ ||+ .+. ..+..++.+... +-+-.+....+- ...+|..|=...+..-+
T Consensus 212 GRvda~vqS~dkNF~VPvGga-----i~As~~~~~i~~vs~~------YpGRas~sp~ld---~~itLl~LG~~g~~~ll 277 (389)
T PF05889_consen 212 GRVDAFVQSTDKNFMVPVGGA-----IMASFDPSGILAVSKE------YPGRASASPSLD---LFITLLSLGCTGYGALL 277 (389)
T ss_dssp STCSEEEEEHHHHHCEESSHE-----EEEESSHHHHHHHHHT------SHSHBTSHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCcceeeeecCCCEEecCCCc-----EEEecCHHHHHHHHHH------hhhhhhcccchH---HHHHHHHHhhhHHHHHH
Confidence 3222 222345533 222 122 245555555431 111111111111 22223222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ecC----
Q 002941 753 IPERRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PLG---- 823 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g---- 823 (863)
.++ ...-.++.+++.++.+++. .+.+....-..+++++..-... .......+...|+.+||-=. +.+
T Consensus 278 ~~r-~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~---~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~t 353 (389)
T PF05889_consen 278 KER-KASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEI---SQKDGTFLGSMLFKRGVSGIRVVTPGGKKQT 353 (389)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTC---CSSHHHHHHHHHHHTTEESSEEEETSSCEEE
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhh---ccchhhhHHHHHHhCCcccceeeccCCCccc
Confidence 222 2233445555566666665 3445555556777777643210 01245678889999876321 111
Q ss_pred --------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 --------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 --------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.-+.+...+-+++||||.++++|+++++
T Consensus 354 sh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 354 SHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp TTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3455555667899999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.016 Score=61.71 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=35.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|.|.|+..|||||++|++|+.+|. +.|++|...-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~-----~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA-----RLGESVLAID 37 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 789999999999999999999999999 8999998776
|
It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.3 Score=49.19 Aligned_cols=201 Identities=14% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecc----cccccccCCcchhhhcCCCCcEEE-ecccc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETTADLLGCVPDIAC-YGKLL 691 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV----~TGfGRtG~~~a~e~~gv~PDivt-~sKgL 691 (863)
.+++|+|+++-- +.-|.+-. ++++.++++++|+++|+ -+ .+++-+-|.+ | .||++ .+|.+
T Consensus 195 ~~~~a~v~vq~P--n~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~------G--ADI~vg~~Q~f 259 (429)
T PF02347_consen 195 DDDTAAVMVQNP--NTFGVFED----IKEIADIAHAAGALVIV-GADPNALGGLKSPGEY------G--ADIVVGEHQTF 259 (429)
T ss_dssp STTEEEEEEESS---TTSB--T----HHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGG------T---SEEEECCTTT
T ss_pred ccCeEEEEeecC--CCCceEee----HHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhc------C--ccEEeeCCCCC
Confidence 367888888752 45566554 89999999999999987 22 1122112222 2 48873 25644
Q ss_pred C----CCCCCceeeeccHHHHHhhhcC---------Cccceee--------c------ccCCCccHHHHH-HHHHHHHHh
Q 002941 692 T----GGVIPLAATLATNAVFDSFVGD---------SKLKALL--------H------GHSYSAHALGCA-AAAKSIKWF 743 (863)
Q Consensus 692 g----gG~~Pigav~~~~~i~~~l~~~---------~~~~~~~--------~------~~T~~~~pla~A-AalAaL~~l 743 (863)
| +|---.|.+.++++++..+... ++ +++. | .+....|..-+| +|..-+..+
T Consensus 260 g~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~-~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~ 338 (429)
T PF02347_consen 260 GIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGK-RAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYL 338 (429)
T ss_dssp T---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCS-CCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHH
T ss_pred cccCCCCCCCeeeEEEhhhhhhhCCCceeccccccccc-ceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 3 3313356677788877766431 00 0110 0 011223433333 223333333
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-c
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-L 822 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-~ 822 (863)
=.+++. ++.+..-....++.++| .+... ..+.+. .|+=.-+...+ .....++.+++...|+.... .
T Consensus 339 G~~GL~-~iA~~~~~~A~yl~~~L----~~~~~-~~~~~~-~f~e~v~~~~~------~~~~~~l~~~~~~~gl~~~~~~ 405 (429)
T PF02347_consen 339 GPEGLR-EIAERIHLNAHYLAERL----KKIYG-LPFDNP-FFFEFVVVFSK------DKEVEELLKRGIEGGLNLRYPD 405 (429)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH----CCTTB-ECSSSS-SBSSEEEEESS-------HHHHHHHHTT----EEEGGG-
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHH----HHhcC-cccCCC-CceeeeeecCC------cHHHHHHHHHHHhcCCCccccC
Confidence 233322 23333333333332232 22210 011111 11111111111 02344466777777755443 2
Q ss_pred CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 823 GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 823 g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.+.+.+.+.=..|+||||.++++|
T Consensus 406 ~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 406 DGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp SSEEEEE--TT--HHHHHHHHH--
T ss_pred CCeEEEEccCCCCHHHHHHHHhcC
Confidence 368888888889999999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.1 Score=60.51 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++++|. ||||||++++.|+..+... +.|.+|+++.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~---~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYALL---YGKKKVALIT 258 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHh---cCCCeEEEEE
Confidence 357888899 8999999999998877411 5688999886
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.41 Score=50.60 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=34.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
||.|-+.++-.|+||||...+|+..|. ++|.+|..+-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la-----~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA-----ARGARVALID 37 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 678999999999999999999999999 8999998887
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.25 Score=52.94 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 12 HHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.++.++++++.. ...|=|||+ .|+|||+++-.|.+.|+ ++|++|+.+-
T Consensus 14 ~~~~ll~~l~~~~g~----------a~~iGiTG~-PGaGKSTli~~l~~~~~-----~~g~~VaVlA 64 (266)
T PF03308_consen 14 EARELLKRLYPHTGR----------AHVIGITGP-PGAGKSTLIDALIRELR-----ERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHGGGTT-----------SEEEEEEE--TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred HHHHHHHHHHhhcCC----------ceEEEeeCC-CCCcHHHHHHHHHHHHh-----hcCCceEEEE
Confidence 566778888776422 224789999 89999999999999999 8899988764
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.15 Score=54.71 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCceEEEeCC-----CcccccCCCCCcHhHHhhhcCCCEEEEECCCCC---cHHHHHHHHHHHHhCC-CcEEEEEEcCCC
Q 002941 220 MEILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG---GISGTISAYESLKLRG-YDVVAVVFEDHG 290 (863)
Q Consensus 220 ~~d~~lvEGa-----gg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g---~i~~~~~~~~~~~~~~-~~v~gvi~n~~~ 290 (863)
+.|+++-.-- ||++.|+.++. -=.|++|.++... .-|.+..+++.+..+| .++.|+|.|.-.
T Consensus 116 ~~D~v~yDVLGDVVCGGFamPir~g~---------a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~ 186 (273)
T PF00142_consen 116 DYDFVLYDVLGDVVCGGFAMPIREGY---------AQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN 186 (273)
T ss_dssp TSSEEEEEEESSSSCTTTTHHHHTTS----------SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS
T ss_pred CCceEEEEEEeeeEEeeeehhhhhcc---------CCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC
Confidence 4688887654 56666763332 2258889988854 4577777777776554 689999999654
Q ss_pred CCCHHHH-HHhhc-CCCCeee-cCCCCCC
Q 002941 291 LVNEVPL-MSYLR-NRVPVLV-LPPLPQD 316 (863)
Q Consensus 291 ~~~~~~~-~~~~~-~~~pvl~-~p~~~~~ 316 (863)
.++...+ .++.+ .+.||++ ||+.+..
T Consensus 187 ~~~e~~~v~~fa~~~g~~i~~~iPr~~~v 215 (273)
T PF00142_consen 187 VDDEEEIVEDFAERIGTPIIAFIPRSEIV 215 (273)
T ss_dssp STTHHHHHHHHHHHHTSEEEEEE---HHH
T ss_pred CCCchHHHHHHHHHcCCcEEEecCchHHH
Confidence 4444444 44432 3899999 9997654
|
Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H .... |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.23 Score=51.42 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+++.|. ||||||+..+-|+..++ .+|.+|...=
T Consensus 3 vi~lvGp-tGvGKTTt~aKLAa~~~-----~~~~~v~lis 36 (196)
T PF00448_consen 3 VIALVGP-TGVGKTTTIAKLAARLK-----LKGKKVALIS 36 (196)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred EEEEECC-CCCchHhHHHHHHHHHh-----hccccceeec
Confidence 4778888 99999999999999998 6688887765
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK13886 conjugal transfer protein TraL; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.62 Score=49.76 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=31.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|.+...|||||++++.|+.+|. ++|.+|..+-
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~-----~~g~~vl~iD 38 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKA-----SKGQKPLCID 38 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 56888899999999999999999998 8898886654
|
|
| >COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.039 Score=61.01 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhhccC-C---CCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 11 DHHRRILLRLFHHST-F---HPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 11 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++--+|+-+++.... + .|...+..+..|.|-|+||.|++|||.||..++|.|+ .+|++|....
T Consensus 96 e~v~~IaS~vLs~GA~f~~~gP~et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~-----ergyrv~vVr 162 (449)
T COG2403 96 EHVFRIASRVLSAGADFKELGPKETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLR-----ERGYRVCVVR 162 (449)
T ss_pred HHHHHHHHHHHhCCceeEEeCccHHhhhhcCceEEEEEeccccchhHHHHHHHHHHH-----HcCCceEEEe
Confidence 334456666554433 2 2333444456899999999999999999999999999 8999998876
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.77 Score=51.45 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+-|+|. .|+|||+++..|...|+ .+|.+|+.+.
T Consensus 58 ~igi~G~-~GaGKSTl~~~l~~~l~-----~~g~~v~vi~ 91 (332)
T PRK09435 58 RIGITGV-PGVGKSTFIEALGMHLI-----EQGHKVAVLA 91 (332)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 5888888 99999999999999998 8899998877
|
|
| >COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.25 Score=51.74 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=56.8
Q ss_pred ceEEEeCC-----CcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcH---HHHHHHHHHHHh-CCCcEEEEEEcCCCCC
Q 002941 222 ILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKL-RGYDVVAVVFEDHGLV 292 (863)
Q Consensus 222 d~~lvEGa-----gg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~~~~-~~~~v~gvi~n~~~~~ 292 (863)
|+++-.=- ||++.|+.++... .+.+|.++.-.++ |.+.-.+.-+.. .+.++.|+|.|.-..+
T Consensus 119 DvviyDVLGDVVCGGFAmPiReg~Ad---------eiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~ 189 (278)
T COG1348 119 DVVIYDVLGDVVCGGFAMPIREGYAD---------EIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVD 189 (278)
T ss_pred CEEEEeccCceeecceeeehhcccCc---------EEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcc
Confidence 77776543 7888898655432 4677888775554 444545544443 5688999999977655
Q ss_pred CHHHHH-Hhhc-CCCCeee-cCCCCCCC
Q 002941 293 NEVPLM-SYLR-NRVPVLV-LPPLPQDS 317 (863)
Q Consensus 293 ~~~~~~-~~~~-~~~pvl~-~p~~~~~~ 317 (863)
+...+. ++.+ .+.|+++ +|+.....
T Consensus 190 ~e~e~v~~fa~~igt~li~~vPr~~ivq 217 (278)
T COG1348 190 RERELVEAFAERLGTQLIHFVPRDNIVQ 217 (278)
T ss_pred cHHHHHHHHHHHhCCceEeeccchHHHH
Confidence 544443 3332 3899999 99876653
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.031 Score=54.67 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEccccc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQT 82 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~ 82 (863)
|.|.|+|. +++|||+++..|+..|. ++|++|+++|=...
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~-----~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELK-----RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-ST
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHh-----HcCCceEEEEEccC
Confidence 56899997 79999999999999999 99999999995444
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.47 Score=46.82 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.|. .|+|||+++..|...+. .+|.++..+.
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~-----~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALR-----ARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 456676 89999999999999998 8899998776
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.35 Score=51.33 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccC--CCCCcHhHHhhhcCCC-EEEEE-------C-CCCCc
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG--PSGSLQCDLYRPFRLP-GILVG-------D-GRLGG 263 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~--~~~~~~~dla~~l~~p-vilV~-------~-~~~g~ 263 (863)
+.|.+++.+..+. ...|++|||=-|-+...- +--...-++...++-. +++|- . .+.--
T Consensus 118 ~eIk~~i~~~~~~-----------~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~K 186 (255)
T cd03113 118 DEIKERIRRVAEK-----------SGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELK 186 (255)
T ss_pred HHHHHHHHHhhcc-----------CCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccc
Confidence 4555666655432 256999999766444331 1111223444444422 22221 1 12222
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcCCC---CCCHHHHHHhhcCCCCeee-cCC
Q 002941 264 ISGTISAYESLKLRGYDVVAVVFEDHG---LVNEVPLMSYLRNRVPVLV-LPP 312 (863)
Q Consensus 264 i~~~~~~~~~~~~~~~~v~gvi~n~~~---~~~~~~~~~~~~~~~pvl~-~p~ 312 (863)
---|.++++.|+++|+++.+||+|... ..+...+..+ +++|+.+ +|.
T Consensus 187 TKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlF--cnVpve~VI~~ 237 (255)
T cd03113 187 TKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALF--CDVPPEAVISA 237 (255)
T ss_pred cCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHh--cCCCHHHeeec
Confidence 456789999999999999999999742 2344445445 7999988 554
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. |
| >PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.22 Score=60.22 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=35.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
+|+.|-|+|. +|+|||++...|+..|+ ++|++|++.|=
T Consensus 9 ~~~vi~ivG~-s~sGKTTlie~li~~L~-----~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAY-SGTGKTTLLEQLIPELN-----QRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCceEEEEEc
Confidence 5788999998 99999999999999999 99999999994
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.53 Score=54.10 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=46.8
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHh---hhc----CCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLY---RPF----RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla---~~l----~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~- 292 (863)
.|++||.++| ..|- +....-.|. +.. ...++||.++..|. +.....+..+ ..+.+-|+|+-+.++.
T Consensus 300 ~D~VLIDTaG--r~~r-d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f--~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 300 SELILIDTAG--YSHR-NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAY--ESLNYRRILLTKLDEAD 373 (432)
T ss_pred CCEEEEeCCC--CCcc-CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHh--cCCCCCEEEEEcccCCC
Confidence 5999999987 3332 112222332 222 33589999977663 2223333333 4567899999988543
Q ss_pred CHHHHHHh-hcCCCCeeec
Q 002941 293 NEVPLMSY-LRNRVPVLVL 310 (863)
Q Consensus 293 ~~~~~~~~-~~~~~pvl~~ 310 (863)
..-.+.+. ...++|+.-+
T Consensus 374 ~~G~il~i~~~~~lPI~yl 392 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYL 392 (432)
T ss_pred CccHHHHHHHHHCCCEEEE
Confidence 22222222 1258998653
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.3 Score=49.64 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=50.0
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCC-EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC--CCHHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--VNEVPL 297 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~--~~~~~~ 297 (863)
.|++||.++|-.----.-..-..++++.++-. ||+|.|+..| ++..+....-..-++|-+||+-+.+- ..-..|
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAl 260 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDGHAKGGGAL 260 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEecccCCCCCcee
Confidence 69999999874321110112356777777744 8999997655 33333333334558899999987621 111112
Q ss_pred HHhhcCCCCeeec
Q 002941 298 MSYLRNRVPVLVL 310 (863)
Q Consensus 298 ~~~~~~~~pvl~~ 310 (863)
...-.++.||..|
T Consensus 261 SaVaaTksPIiFI 273 (483)
T KOG0780|consen 261 SAVAATKSPIIFI 273 (483)
T ss_pred eehhhhCCCEEEE
Confidence 2111267888754
|
|
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.054 Score=58.98 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.|.|+|. +|+||||++.-|++.|+ ++| +|++.|=
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~-----~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLS-----GRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----hCC-CEEEEEE
Confidence 678999999 69999999999999999 899 8999993
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=93.91 E-value=5.8 Score=48.14 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHH
Q 002941 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 482 (863)
Q Consensus 442 ~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~ 482 (863)
+....++-+.|++++|-+ ...-.|+++||+||-.||.+|+
T Consensus 122 t~lE~~vi~~la~l~G~~-~~~G~~TsGGT~ANl~aL~~AR 161 (608)
T TIGR03811 122 SQMEEEVGKEFATLMGYK-NGWGHIVADGSLANLEGLWYAR 161 (608)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCeEEeCChHHHHHHHHHHHH
Confidence 455666777777877632 1234689999999999999994
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.22 Score=54.53 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=30.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-C-CceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-N-KKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g-~~v~~~K 78 (863)
...+.|.|. ||||||++++.|+..+. .+ | .+|+++.
T Consensus 194 ~~vi~~vGp-tGvGKTTt~~kLa~~~~-----~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGP-TGVGKTTTLAKLAARFV-----LEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HHcCCCeEEEEE
Confidence 346888898 89999999999999987 54 4 8998887
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.3 Score=54.51 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=46.8
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhc----CCCEEEEECCCCC--cHHHHHHHHHHHHh-CCCcEEEEEEcCCCCC-
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLG--GISGTISAYESLKL-RGYDVVAVVFEDHGLV- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l----~~pvilV~~~~~g--~i~~~~~~~~~~~~-~~~~v~gvi~n~~~~~- 292 (863)
.|+|||.++| .++.. ...+-++.+.. ...++||.+...+ .++.++ +.++. .+.++-|+||-+.++.
T Consensus 264 ~D~VLIDTAG--Rs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 264 KHLVLIDTVG--MSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred CCEEEEeCCC--CCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCCCCEEEEeccCCCC
Confidence 4999999999 45532 22333333322 2348999986643 233333 33332 2457889999998543
Q ss_pred CHHHHHHh-hcCCCCeeec
Q 002941 293 NEVPLMSY-LRNRVPVLVL 310 (863)
Q Consensus 293 ~~~~~~~~-~~~~~pvl~~ 310 (863)
..-.+-+. ...++||.-|
T Consensus 338 ~~G~iL~i~~~~~lPI~yi 356 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYV 356 (767)
T ss_pred CccHHHHHHHHHCCCeEEE
Confidence 22222221 1258888754
|
|
| >KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.5 Score=52.41 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
-|.++|.|. |++|||+++.-|+.+.. +.|+++.|.-
T Consensus 103 GPrv~vVGp-~d~GKsTl~r~L~nyav-----k~gr~Plfv~ 138 (415)
T KOG2749|consen 103 GPRVMVVGP-TDVGKSTLCRILLNYAV-----KQGRRPLFVE 138 (415)
T ss_pred CCEEEEECC-CccchHHHHHHHHHHHH-----HcCCcceEEE
Confidence 466999997 99999999999999988 8888887765
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=92.64 E-value=3.2 Score=40.80 Aligned_cols=60 Identities=20% Similarity=0.015 Sum_probs=44.3
Q ss_pred HhHHhhhcCCCEEEEEC-CCCC-cHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhc
Q 002941 242 QCDLYRPFRLPGILVGD-GRLG-GISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR 302 (863)
Q Consensus 242 ~~dla~~l~~pvilV~~-~~~g-~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~ 302 (863)
--.+++.++.|||=|+. .++- .-...-.+.+.|+..|.+=. +.++-......+.|++||+
T Consensus 81 pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 81 PPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCCcCHHHHHHHHh
Confidence 35677888999998887 5554 35566667788888888744 7777777778888888864
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.36 E-value=25 Score=40.39 Aligned_cols=206 Identities=15% Similarity=0.112 Sum_probs=103.7
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEE--ecccccccccCCcchhhhcCCCCcEEE-----ecc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLGCVPDIAC-----YGK 689 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~--DEV~TGfGRtG~~~a~e~~gv~PDivt-----~sK 689 (863)
.+++++++++=- +..|.... -++.|.+.++++|+++|+ |=+- ++-.-..+-+ -.||++ ||=
T Consensus 208 ~~~~~gv~vQyP--~~~G~~~~---d~~~l~~~~h~~~al~~v~aDpla--L~LL~pPGe~-----GADIvvG~~QrfGv 275 (450)
T COG0403 208 DGDVFGVLVQYP--NTFGIVEE---DLRALIEAAHSAGALVIVAADPLA--LGLLKPPGEF-----GADIVVGSAQRFGV 275 (450)
T ss_pred ccCeEEEEEecC--CCCCccch---hHHHHHHHHhhcCCEEEEEechhH--hhccCCcccc-----CCceEEecCcccCC
Confidence 357888888853 34453332 289999999999998874 4332 3222111111 235543 444
Q ss_pred ccC-CCCCCceeeeccHHHHHhhhcC---------C----------------ccceeecccCCCccHHHHHHHHHHHHHh
Q 002941 690 LLT-GGVIPLAATLATNAVFDSFVGD---------S----------------KLKALLHGHSYSAHALGCAAAAKSIKWF 743 (863)
Q Consensus 690 gLg-gG~~Pigav~~~~~i~~~l~~~---------~----------------~~~~~~~~~T~~~~pla~AAalAaL~~l 743 (863)
.|+ || -=.|...++++..+.+... + +.++.. .-..|.+=+|.+-+..-.+
T Consensus 276 PmgfGG-Phag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATS---NICTnQaLlA~~As~y~~~ 351 (450)
T COG0403 276 PMGFGG-PHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATS---NICTNQALLALAASMYAVY 351 (450)
T ss_pred CcCCCC-cceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccch---hhhHHHHHHHHHHHHHHHH
Confidence 444 44 2345566777776655321 0 000110 0112222222222222222
Q ss_pred cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC
Q 002941 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 744 ~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g 823 (863)
.-++=+.++.++.-++...+.++ +++......+...-.|--+.+.-+. .....+..+....|+-++...
T Consensus 352 hGp~GLk~iA~r~~~~a~~la~~----L~~~~~g~~~~~~~fFdt~~v~~~~-------~~~~~l~~~~~~~G~~L~~~~ 420 (450)
T COG0403 352 HGPQGLKEIAERIHRLAAYLAAG----LKEIGAGVELVFDHFFDTFTVRVPE-------EVAEALLAAAIAGGINLRRVD 420 (450)
T ss_pred hChHHHHHHHHHHHHHHHHHHHH----HhhcCCceEeccccceeeEEEecch-------hHHHHHHHHHHhcCCceeeec
Confidence 23332333444444444444333 2322221222222333333333221 246667788888999888754
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
..+-++..-++|+++|+.+++.+...
T Consensus 421 ~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 421 ADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred CCceEEEeecccCHHHHHHHHHHHhhh
Confidence 56777767778999999999988764
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.56 Score=48.13 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+=|.|+ .|||||++..-+++.|+ .+ ++++..+
T Consensus 15 ~i~v~Gp-~GSGKTaLie~~~~~L~-----~~-~~~aVI~ 47 (202)
T COG0378 15 RIGVGGP-PGSGKTALIEKTLRALK-----DE-YKIAVIT 47 (202)
T ss_pred EEEecCC-CCcCHHHHHHHHHHHHH-----hh-CCeEEEe
Confidence 3444454 99999999999999997 55 8888887
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.03 E-value=8.1 Score=42.22 Aligned_cols=218 Identities=15% Similarity=0.131 Sum_probs=126.2
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG 693 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg 693 (863)
+++.||.|++..| |--.|-..- +.++-..-+..|+++-+|=+| .+|-. ..-...||+ |..|. =|=+..
T Consensus 211 ngDeiA~v~fSGv-qyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAH-AvgNV--pL~LHdWgV--DFACWCSYKYlna 280 (465)
T KOG3846|consen 211 NGDEIALVCFSGV-QYYTGQYFD----IGAITFAGQFKGCLVGFDLAH-AVGNV--PLQLHDWGV--DFACWCSYKYLNA 280 (465)
T ss_pred cCCeEEEEEeecc-eeecccccc----hhhhhhcccCCCcEechhhhh-hhcCC--ceEEeecCC--ceEEEeeeccccc
Confidence 5789999999998 877786665 566666667779999999888 45432 222233444 65544 253321
Q ss_pred CCCCceeeeccHHHHH--------hhhcC--Cc--------cceeecccCCCccHH-HHHHHHHHHHHhcChhhHHhHHH
Q 002941 694 GVIPLAATLATNAVFD--------SFVGD--SK--------LKALLHGHSYSAHAL-GCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 694 G~~Pigav~~~~~i~~--------~l~~~--~~--------~~~~~~~~T~~~~pl-a~AAalAaL~~l~~~~l~~~l~~ 754 (863)
|-=-||...+.++... ++... .+ ..+...|+-.+..|+ ..+|.+++|+++..-. ..++++
T Consensus 281 GaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRk 359 (465)
T KOG3846|consen 281 GAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRK 359 (465)
T ss_pred CCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhh
Confidence 1112344444333222 11110 00 011112333334444 4455577888875433 567777
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCC------e-----eEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec
Q 002941 755 ERRILRELWDLELIQQI-SSHRT------V-----QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL 822 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~-~~~p~------v-----~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~ 822 (863)
+.-.+..++...+.... .++|. + ..+.-+|.-+.+.|..+ ...+.++|-++|+++--.
T Consensus 360 rS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp----------~~~vfqeL~krGv~~DkR 429 (465)
T KOG3846|consen 360 RSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP----------TPKVFQELHKRGVIGDKR 429 (465)
T ss_pred hhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC----------chHHHHHHHHcCeecccc
Confidence 77777666644332222 22221 1 12233455555555443 357899999999998643
Q ss_pred -CCEEEEecCC-CCcHHHHHHHHHHHHHHHHHHH
Q 002941 823 -GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 823 -g~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.|++|+.|-. ..+-.|+-.++.+|.++++.++
T Consensus 430 ~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 430 RPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred CCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 4899998744 4688999999999998887654
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.8 Score=49.37 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=47.6
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhc----CCCEEEEECCCCCcHHHHH-HHHHHHHhCCCcEEEEEEcCCCCC---
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLGGISGTI-SAYESLKLRGYDVVAVVFEDHGLV--- 292 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l----~~pvilV~~~~~g~i~~~~-~~~~~~~~~~~~v~gvi~n~~~~~--- 292 (863)
+|++||.++| .++. +.....+|...+ .+-+-||.+.. +=...+ ..++.+ +-+++.|+||-+.++.
T Consensus 282 ~d~ILVDTaG--rs~~-D~~~i~el~~~~~~~~~i~~~Lvlsat--~K~~dlkei~~~f--~~~~i~~~I~TKlDET~s~ 354 (407)
T COG1419 282 CDVILVDTAG--RSQY-DKEKIEELKELIDVSHSIEVYLVLSAT--TKYEDLKEIIKQF--SLFPIDGLIFTKLDETTSL 354 (407)
T ss_pred CCEEEEeCCC--CCcc-CHHHHHHHHHHHhccccceEEEEEecC--cchHHHHHHHHHh--ccCCcceeEEEcccccCch
Confidence 3999999999 5554 333334444333 56688888854 222222 233333 3468999999988543
Q ss_pred -CHHHHHHhhcCCCCeeec
Q 002941 293 -NEVPLMSYLRNRVPVLVL 310 (863)
Q Consensus 293 -~~~~~~~~~~~~~pvl~~ 310 (863)
|.-.+... ++.||.-+
T Consensus 355 G~~~s~~~e--~~~PV~Yv 371 (407)
T COG1419 355 GNLFSLMYE--TRLPVSYV 371 (407)
T ss_pred hHHHHHHHH--hCCCeEEE
Confidence 33334433 68898643
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.18 Score=51.45 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=30.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+++++|. +|+|||.++.+++..+. ++|++|.|++
T Consensus 47 ~~~l~l~G~-~G~GKThLa~ai~~~~~-----~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGP-PGTGKTHLAVAIANEAI-----RKGYSVLFIT 82 (178)
T ss_dssp --EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CeEEEEEhh-HhHHHHHHHHHHHHHhc-----cCCcceeEee
Confidence 457999997 99999999999999998 8999999998
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.1 Score=52.68 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=31.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++|.|..+|+|||++++-++.... ++|.+|.||=
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~-----~~g~~V~~fS 227 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKAL-----NQDKGVAFFS 227 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 4899999999999999999998876 7899999985
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.6 Score=51.20 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=27.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCC-CceeEE
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYL 77 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g-~~v~~~ 77 (863)
..+.+.|. +||||||.++-|+..+.. ++| ++|+..
T Consensus 257 ~Vi~LvGp-nGvGKTTTiaKLA~~~~~----~~G~~kV~LI 292 (484)
T PRK06995 257 GVFALMGP-TGVGKTTTTAKLAARCVM----RHGASKVALL 292 (484)
T ss_pred cEEEEECC-CCccHHHHHHHHHHHHHH----hcCCCeEEEE
Confidence 46889998 899999999999988742 444 467643
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.50 E-value=3.1 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.++++|. .|+||||..+=|++.|+ ++|++|..-
T Consensus 141 Vil~vGV-NG~GKTTTIaKLA~~l~-----~~g~~Vlla 173 (340)
T COG0552 141 VILFVGV-NGVGKTTTIAKLAKYLK-----QQGKSVLLA 173 (340)
T ss_pred EEEEEec-CCCchHhHHHHHHHHHH-----HCCCeEEEE
Confidence 5899999 69999999999999999 999999654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=5.1 Score=45.69 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=47.7
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhh--hcCCC--EEEEECCCCC--cHHHHHHHHHHHHhC--C--CcEEEEEEcCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYR--PFRLP--GILVGDGRLG--GISGTISAYESLKLR--G--YDVVAVVFEDHG 290 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~--~l~~p--vilV~~~~~g--~i~~~~~~~~~~~~~--~--~~v~gvi~n~~~ 290 (863)
.|++||.++| .+|... ...-.++. ..+.| ++||.++..+ .++.++..+..+... + .++.|+||-+.+
T Consensus 216 ~DlVLIDTaG--~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 216 KHMVLIDTIG--MSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCEEEEcCCC--CCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 4999999998 555422 22222222 22333 6888886644 345555555444211 1 257899999885
Q ss_pred CC-CHHHHHH-hhcCCCCeeec
Q 002941 291 LV-NEVPLMS-YLRNRVPVLVL 310 (863)
Q Consensus 291 ~~-~~~~~~~-~~~~~~pvl~~ 310 (863)
+. ..-.+.+ ..+.++||.-+
T Consensus 293 Et~~~G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 293 EASNLGGVLDTVIRYKLPVHYV 314 (374)
T ss_pred cCCCccHHHHHHHHHCcCeEEE
Confidence 43 2222222 22258898754
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.34 Score=49.13 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+.|+|. +|+|||++...|++.|. .+|++|+..|
T Consensus 6 ~~ii~ivG~-sgsGKTTLi~~li~~l~-----~~g~~vg~Ik 41 (173)
T PRK10751 6 IPLLAIAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (173)
T ss_pred ceEEEEECC-CCChHHHHHHHHHHHHh-----hcCCeEEEEE
Confidence 456788886 99999999999999998 8899999999
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.3 Score=52.49 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCC----------CCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSP----------TSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~----------~~~~g~~v~~~K 78 (863)
.++|.+..+|+|||++++-++....... +..+|.+|.||=
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS 267 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS 267 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe
Confidence 4788888899999999998887764110 001377888884
|
|
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.33 Score=48.41 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=30.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+|||. +|+|||+++.+|.+.|. .+|.++.++-
T Consensus 4 vIwltGl-sGsGKtTlA~~L~~~L~-----~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGL-SGSGKTTLARALERRLF-----ARGIKVYLLD 37 (156)
T ss_dssp EEEEESS-TTSSHHHHHHHHHHHHH-----HTTS-EEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEec
Confidence 4889998 89999999999999999 8999998887
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
| >PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.32 Score=53.94 Aligned_cols=64 Identities=27% Similarity=0.253 Sum_probs=43.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC-CH--H--------------HHHHhhcCCCCeeecCCCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NE--V--------------PLMSYLRNRVPVLVLPPLP 314 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~-~~--~--------------~~~~~~~~~~pvl~~p~~~ 314 (863)
-+++|.....-.+..+.-.++.|+..|+++.+||+|++-++ .. . .+.+.+ .++||.-+|..+
T Consensus 209 ~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f-~~~~v~~vp~~~ 287 (305)
T PF02374_consen 209 SFRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESF-PDLPVVKVPLLP 287 (305)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEE--S
T ss_pred EEEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHh-cCCCEEEecCCC
Confidence 47899998888999999999999999999999999987221 11 1 222222 368887787766
Q ss_pred CC
Q 002941 315 QD 316 (863)
Q Consensus 315 ~~ 316 (863)
..
T Consensus 288 ~e 289 (305)
T PF02374_consen 288 EE 289 (305)
T ss_dssp S-
T ss_pred CC
Confidence 53
|
... |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=90.15 E-value=5.2 Score=43.62 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=30.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.+.|. +|+|||++...|+..+. .+|.+|++.-
T Consensus 76 ~~i~~~G~-~g~GKTtl~~~l~~~l~-----~~~~~v~~i~ 110 (270)
T PRK06731 76 QTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 110 (270)
T ss_pred CEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 56888888 99999999999999987 6787887765
|
|
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.41 Score=52.14 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 33 ~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|...++.|-|+|+ +|+|||+++..|...|. +.+.++.++.
T Consensus 1 Ms~k~piI~ItG~-SGsGKTTva~~l~~if~-----~~~~~~~vi~ 40 (290)
T PRK15453 1 MSAKHPIIAVTGS-SGAGTTTVKRAFEKIFR-----RENINAAVVE 40 (290)
T ss_pred CCCCCcEEEEECC-CCCCHHHHHHHHHHHHh-----hcCCCeEEEe
Confidence 3345678899997 99999999999999998 6676655444
|
|
| >PRK06749 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=2.2 Score=49.65 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=31.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.|..+++|||++++-++.... ++|.+|.+|=
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a-----~~g~~v~~fS 221 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAA-----KSGAAVGLFS 221 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHH-----hcCCCEEEEE
Confidence 4899999999999999999999887 7789999985
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.4 Score=54.57 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
.|+.|-|+|. +|+|||++...|++.|+ ++|++|++.|=
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~-----~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELI-----ARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHH-----HcCCEEEEEEE
Confidence 4678999996 99999999999999999 99999999993
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 863 | ||||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 0.0 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 0.0 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 2e-32 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 3e-32 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 2e-29 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 4e-28 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 6e-28 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 2e-27 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 3e-27 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 3e-27 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 4e-27 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 5e-27 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 5e-27 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 5e-27 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 6e-27 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 1e-16 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 2e-16 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 2e-16 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 7e-16 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 8e-13 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 2e-12 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 1e-11 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 7e-11 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 1e-10 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 2e-10 | ||
| 4e3q_A | 473 | Pmp-Bound Form Of Aminotransferase Crystal Structur | 4e-10 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 7e-10 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 7e-10 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 3e-09 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 4e-09 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 4e-09 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 5e-09 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 6e-09 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 7e-09 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 7e-09 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 3e-08 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 3e-08 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 3e-08 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 5e-08 | ||
| 4grx_A | 465 | Structure Of An Omega-Aminotransferase From Paracoc | 6e-08 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 7e-08 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 9e-08 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 2e-06 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 3e-06 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 6e-06 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 1e-05 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 2e-05 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 2e-05 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 2e-05 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 2e-05 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 6e-05 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 6e-05 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 6e-05 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 1e-04 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-04 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 3e-04 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 7e-04 |
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 834 bits (2157), Expect = 0.0
Identities = 568/849 (66%), Positives = 667/849 (78%), Gaps = 22/849 (2%)
Query: 7 HHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP 66
HH+ H ++ R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL
Sbjct: 4 HHHHHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQ 63
Query: 67 TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKS 126
SS+ K +YLKPIQTG+P DSDSRF+F+KL SLSLRR P S + S
Sbjct: 64 PSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDSLSLRRQIPIS-------------ISNS 110
Query: 127 FLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
L S + N E+ + N + + EL+CKTL+AWE A+SPHLAAER
Sbjct: 111 VLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLYAWEAAISPHLAAER 170
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E V DS V++ + KCL++ +E +SE+ ++LC+VETAGGVASPGPSG+LQCDLY
Sbjct: 171 E-NATVEDSVVLQMIEKCLKEEMECGVKSEKS--DLLCLVETAGGVASPGPSGTLQCDLY 227
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
RPFRLPGILVGDGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VP
Sbjct: 228 RPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVP 287
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
VLVLPP+P+D S+DL+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFT
Sbjct: 288 VLVLPPVPKDPSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFT 347
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QHKLV +E VTVIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MG
Sbjct: 348 QHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMG 407
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
YTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF
Sbjct: 408 YTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC 467
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH +F EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGL
Sbjct: 468 VDH----NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTVF+ N W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S+
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSK 581
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
+L ++ G++ S +GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGF
Sbjct: 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGF 641
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726
WRLGVETT +LLGC PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSKLKALLHGHSY
Sbjct: 642 WRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSY 701
Query: 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786
SAHA+GCA AAK+I+WFKDP+TNHNI + + LRELWD EL+QQISSH VQRVV +GTL
Sbjct: 702 SAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTL 761
Query: 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKL 846
A+EL+A N+GY SLYA SLL LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KL
Sbjct: 762 FALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKL 821
Query: 847 YQRLEEFDK 855
Y+RL EF++
Sbjct: 822 YKRLGEFNR 830
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 1e-85
Identities = 127/504 (25%), Positives = 192/504 (38%), Gaps = 105/504 (20%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMTS--PLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ + + +D+GS A+E
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVE 117
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-----S 530
+A+KMA + + G+ + L + YHGDT GAM P S
Sbjct: 118 VAMKMALQYWQA--------KGEARQ------RFLTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
+ G+L + LF P M EW +E
Sbjct: 164 LWKGYLPE------NLFAPAPQSRMD--------GEW---------------------DE 188
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
RD A + +++ + I A+IIEP+V AGGM M P + + + K C
Sbjct: 189 RDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
I +I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770
+ +HG ++ + L CAAA S+ + + I +L E +
Sbjct: 296 ISNG-EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQV---ADIEVQLR--EQLAP 349
Query: 771 ISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMC 830
V V LG + +E A+L K E GV++RP G +IYLM
Sbjct: 350 ARDAEMVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLM- 400
Query: 831 GP--CSSPEVCSQLLLKLYQRLEE 852
P P+ +L + + +++
Sbjct: 401 -PPYIILPQQLQRLTAAVNRAVQD 423
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 1e-83
Identities = 122/503 (24%), Positives = 193/503 (38%), Gaps = 94/503 (18%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
W P++ + V + G ++ +D + + DA +SWWT G P
Sbjct: 41 LWHPYSSIGR-EAVSPVVAVAAHGAWLTLIRDGQPIEV---LDAMSSWWTAIHGHGHP-- 94
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
L + + HVMF +EPA A+LL+ G +FSD+GS ++E
Sbjct: 95 ----ALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL-DTVFFSDSGSVSVE 149
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+A KMA + + G+ K +++ +G YHGDT AM
Sbjct: 150 VAAKMALQYW----------RGRGLPGKR---RLMTWRGGYHGDTFLAMSIC-------- 188
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
DP +S W L + F + Y+ S+
Sbjct: 189 -------------DPHGGM--HSLWTDVLAAQV-----------FAPQVPRDYDPAYSAA 222
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
+ + + + + A+++EPVV AGGM DP + L C+ ++
Sbjct: 223 FEAQLAQHAGE-------------LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV 269
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+IFDE+ TGF R G AD G PDI C GK LTGG + LAATL T V + +
Sbjct: 270 LLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGA 329
Query: 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775
AL+HG ++ A+ L CA + S++ I + L + +
Sbjct: 330 A-GALMHGPTFMANPLACAVSVASVELLLGQDWRTRI---TELAAGLT--AGLDTARALP 383
Query: 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP--C 833
V V G + IE A + GV++RP N++Y M P
Sbjct: 384 AVTDVRVCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFRNLVYAM--PPYI 433
Query: 834 SSPEVCSQLLLKLYQRLEEFDKV 856
+P +Q+ + + +
Sbjct: 434 CTPAEITQITSAMVEVARLVGSL 456
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 2e-81
Identities = 128/518 (24%), Positives = 207/518 (39%), Gaps = 84/518 (16%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT- 410
D+ +++ + W PFTQ K +E +I+S G V ++ D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMK-DYDENPLIIES--GTGIKVKDINGKEYY----DGFSSVWLN 56
Query: 411 -QG---PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466
G EL + + H PA + AE L+ K +R ++
Sbjct: 57 VHGHRKK------ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFY 109
Query: 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
SD+G+ A+EIALKMAF+ + EK K +A+K YHGDT+GA+
Sbjct: 110 SDSGAEAMEIALKMAFQYW----------KNIGKPEKQ---KFIAMKNGYHGDTIGAVSV 156
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
LF + + + E I + R E
Sbjct: 157 ---------------GSIELF---------HHVYGPLMFE------SYKAPIPYVYRSES 186
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
+ + + ++ I AL IE +V A GM ++ + +
Sbjct: 187 GDPDECRDQCLRELAQLLEEH---------HEEIAALSIESMVQGASGMIVMPEGYLAGV 237
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +I DEV TGF R G + PD+ GK +TGG +P+A T AT
Sbjct: 238 RELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATED 297
Query: 707 VFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765
++ +F D LK HGHSY+ + LGCA A +++ F+ + + + L L
Sbjct: 298 IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLL-- 355
Query: 766 ELIQQISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMRPL 822
Q + + V + LG +C EL + + K+RE G+ RPL
Sbjct: 356 ---QDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL 412
Query: 823 GNVIYLMCGP--CSSPEVCSQLLLKLYQRLEEFDKVEE 858
G+VI + P S+ E S+++ + Q + E +E+
Sbjct: 413 GDVIAFL--PPLASTAEELSEMVAIMKQAIHEVTSLED 448
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 1e-48
Identities = 95/535 (17%), Positives = 171/535 (31%), Gaps = 142/535 (26%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-------- 412
W P+T ++ +I + E + D+ K D+ + WT G
Sbjct: 19 HWMPYTANRNF-LRDPRLIVA--AEGSWLVDDKGRKVY----DSLSGLWTCGAGHTRKEI 71
Query: 413 PDATLQIELARDMG----YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSD 468
+A +A+ + ++GH + + AE + + +F+D
Sbjct: 72 QEA-----VAKQLSTLDYSPGFQYGH--------PLSFQLAEKITDLTPGN-LNHVFFTD 117
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-- 526
+GS A+KM + G+ K K++ YHG +
Sbjct: 118 SGSECALTAVKMVRAYW--------RLKGQ--ATKT---KMIGRARGYHGVNIAGTSLGG 164
Query: 527 --------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
P L + P ++L + L I H
Sbjct: 165 VNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG------GIALADELLKLIELHDAS 218
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
I A+ +EP+ + G+ +V
Sbjct: 219 N----------------------------------------IAAVFVEPLA-GSAGV-LV 236
Query: 639 DPL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695
P +R +E C I ++FDEV TGF R G AD G PD+ C K +T G
Sbjct: 237 PPEGYLKRN--REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGA 294
Query: 696 IPLAATLATNAVFDSFVGDS---KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN- 751
IP+ A +A+ ++ +F+ HG++YSAH + CAA ++ + +
Sbjct: 295 IPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSV 354
Query: 752 --IIPE-RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 808
+ P + L + + + I R G AI++ G +
Sbjct: 355 AEVAPHFEKALHGIKGAKNVIDI---RNF------GLAGAIQIAP---RDGDAIVRPFEA 402
Query: 809 LKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
L + G Y+R G+ + P ++ D++ + +
Sbjct: 403 GMALWKAGFYVRFGGDTLQFG--P---TFNSKP---------QDLDRLFDAVGEV 443
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 3e-47
Identities = 98/534 (18%), Positives = 167/534 (31%), Gaps = 136/534 (25%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPD-- 414
W + TV E V Q +++ D + W G
Sbjct: 20 VWHGMRPFS---PNSTTVGAK--AEGCWVEDIQGKRYL----DGMSGLWCVNSGYGRKEL 70
Query: 415 ---ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA---SRAYFSD 468
A Q + + Y H EPA++ AE L + W +FS+
Sbjct: 71 AEAAYKQ---LQTLSYFPMSQSH--------EPAIKLAEKLNE-----WLGGEYVIFFSN 114
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-----LGA 523
+GS A E A K+A + + G+ + K ++ YHG+T
Sbjct: 115 SGSEANETAFKIARQYY--------AQKGE--PHR---YKFMSRYRGYHGNTMATMAATG 161
Query: 524 MEA-----QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
+ + + P + + + + +
Sbjct: 162 QAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI-------YDVECVKEVDRVMTWEL-- 212
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
E I A I+EP++ G +
Sbjct: 213 ----------SET----------------------------IAAFIMEPIITGGGILMAP 234
Query: 639 DPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ + E CQ +I DEV GF R G PDI K +T +P
Sbjct: 235 QDYMKAV--HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLP 292
Query: 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757
L+AT ++++F G + + H +++ + CA A K+++ ++ N+I
Sbjct: 293 LSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN----ENLIERSA 348
Query: 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA-AGCNAGYGSLYAASLLKKLREDG 816
+ L +L ++I H V + G L IEL + AS++ +E G
Sbjct: 349 QMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKG 408
Query: 817 VYMRPLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
+ + G N++ L P P V S EE V LK+
Sbjct: 409 LIIGRNGMTTAGYNNILTLA--P---PLVISS---------EEIAFVIGTLKTA 448
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 4e-47
Identities = 95/524 (18%), Positives = 171/524 (32%), Gaps = 115/524 (21%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD-- 414
+ FT + + V+ GE + +++ DA + W
Sbjct: 29 SLYGFTDMPSLHQRGTVVVTH--GEGPYIVDVNGRRYL----DANSGLWNMVAGFDHKGL 82
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q + + +E L++ + R +++++
Sbjct: 83 IDAAKAQ---YERFPGYHAFFGRMS--------DQTVMLSEKLVEVSPFD-SGRVFYTNS 130
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529
GS A + +KM + GK +K K+L +YHG T +
Sbjct: 131 GSEANDTMVKMLWFLH--------AAEGK--PQK---RKILTRWNAYHGVTAVSASM--- 174
Query: 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589
TG +P+ +F P LP H +
Sbjct: 175 ---TG---KPY---NSVF-GLP------------LPG------FVHLTCPHY------WR 200
Query: 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH-MVDPLFQRILVK 648
+ + + + +++ L + + + I EPV+ AGG+ FQ I
Sbjct: 201 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVM-GAGGVIPPAKGYFQAI--L 257
Query: 649 E-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ IPVI DEV GF R G PD K LT G P+ A + +
Sbjct: 258 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPEL 317
Query: 708 FDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN---IIPE-RRILREL 762
++ HG + S H +GCA A K+I + N + P L+ +
Sbjct: 318 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI 377
Query: 763 WDLELIQQISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYM 819
+ I + R + G + A+E +A+ + + + G+
Sbjct: 378 AERPNIGEY---RGI------GFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLIC 428
Query: 820 RPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
RPLG + L P P + ++ + D++ +KL+
Sbjct: 429 RPLGQSVVLC--P---PFILTE---------AQMDEMFDKLEKA 458
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 9e-41
Identities = 110/524 (20%), Positives = 185/524 (35%), Gaps = 109/524 (20%)
Query: 361 FWWPFTQHK--LVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD 414
F+ P T E ++ GE +V+ + K I DA A + G
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAG--GEGVTVWDNNGRKSI----DAFAGLYCVNVGYGRQ 70
Query: 415 -----ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
Q A+++ Y G E ++ A++++ KG SR YF
Sbjct: 71 KIADAIATQ---AKNLAYYHAYVGHGT--------EASITLAKMIIDRAPKG-MSRVYFG 118
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
+GS A E +K+ + + LG+ EK K+++ YHG +
Sbjct: 119 LSGSDANETNIKLIWYYN--------NVLGR--PEKK---KIISRWRGYHGSGVMTGSL- 164
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
TG + F D P V H + +
Sbjct: 165 -----TG---LDLF--HNAF-DLP------------RAP------VLHTEAPYY------ 189
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRIL 646
+ D S +S + + L + + I A I EP++ GG+ +++I
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPIL-GTGGIVPPPAGYWEKI- 247
Query: 647 VKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATN 705
+ + + ++ DEV TGF RLG +D G PD+ K LT PL+ + +
Sbjct: 248 -QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVAD 306
Query: 706 AVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764
V+ V S KL +L HG +YSAH + AA +++ + +++ +
Sbjct: 307 RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE----MDLVTNAGETGAYFR 362
Query: 765 LELIQQISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMR- 820
EL + + H+ V V G L A+E + + L GV R
Sbjct: 363 AELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRA 422
Query: 821 -PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
P G+++ P P ++ E+ D V K
Sbjct: 423 MPQGDILGFA--P---PLCLTR---------EQADIVVSKTADA 452
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 9e-41
Identities = 98/530 (18%), Positives = 170/530 (32%), Gaps = 129/530 (24%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PFT + + V+ GE ++ + NK I D A W D
Sbjct: 18 HLHPFTDTASLNQAGARVMTR--GEGVYLWDSEGNKII----DGMAGLWCVNVGYGRKDF 71
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q ++ + T + H +E + LL + G R +++++
Sbjct: 72 AEAARRQ---MEELPFYNTFFKTTH--------PAVVELSSLLAEVTPAG-FDRVFYTNS 119
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--- 526
GS +++ ++M R + D GK EK ++ YHG T+G
Sbjct: 120 GSESVDTMIRMVRRYW--------DVQGK--PEKK---TLIGRWNGYHGSTIGGASLGGM 166
Query: 527 -------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
P P ++QPW+ G + P + + WL KI+E
Sbjct: 167 KYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDE-------FGVVAARWLEEKILEIGADK 219
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
+ A + EP+ AGG+ +V
Sbjct: 220 ----------------------------------------VAAFVGEPIQ-GAGGV-IVP 237
Query: 640 PL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
P + I + C+ + ++ DEV GF R G G PD+ K L+ G +
Sbjct: 238 PATYWPEI--ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL 295
Query: 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756
P+ A V + + HG +YS H + A A ++ +D + +
Sbjct: 296 PIGAVFVGKRVAEGLIAGG---DFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV---K 349
Query: 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLR 813
+ + S V V +G + A L +A
Sbjct: 350 DDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF 409
Query: 814 EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
+ + MR G+ I + P V ++ E D++ + C
Sbjct: 410 RNNLIMRACGDHIVS-----APPLVMTR---------AEVDEMLAVAERC 445
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 2e-39
Identities = 98/530 (18%), Positives = 178/530 (33%), Gaps = 131/530 (24%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PF+ + + EE VI + + + + DA A W +
Sbjct: 23 HLHPFSANNALGEEGTRVITR--ARGVWLNDSEGEEIL----DAMAGLWCVNIGYGRDEL 76
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q R++ Y T + H PA+ A+ L + + +F+
Sbjct: 77 AEVAARQ---MRELPYYNTFFKTTH--------VPAIALAQKLAELAPGD-LNHVFFAGG 124
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----- 524
GS A + ++M + G+ EK +++ K +YHG T+ +
Sbjct: 125 GSEANDTNIRMVRTYW--------QNKGQ--PEKT---VIISRKNAYHGSTVASSALGGM 171
Query: 525 ----EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
P + QP + G +DP + L+ L I+E +
Sbjct: 172 AGMHAQSGLIPDVHHINQPNWWAEGGDMDPEE-------FGLARARELEEAILELGENR- 223
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
+ A I EPV AGG+ +V P
Sbjct: 224 ---------------------------------------VAAFIAEPVQ-GAGGV-IVAP 242
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ I + C I +I DEV GF R G +G P I K L+ G P
Sbjct: 243 DSYWPEI--QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAP 300
Query: 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757
+ ++ + V D HG++YS H + A A ++++ ++ NI+ R
Sbjct: 301 IGGSIVCDEVAHVIGKDE----FNHGYTYSGHPVAAAVALENLRILEE----ENILDHVR 352
Query: 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN----AGYGSLYAASLLKKLR 813
+ + E + ++ H V +G + +I L + A ++
Sbjct: 353 NVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCF 412
Query: 814 EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
+ + MR +G+ + + S P V + E D++ +++
Sbjct: 413 ANNLIMRHVGDRMII-----SPPLVITP---------AEIDEMFVRIRKS 448
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 5e-37
Identities = 93/531 (17%), Positives = 172/531 (32%), Gaps = 130/531 (24%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
P + + + A V+ E V+ + + I D A W +
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTH--AEGIYVHTEDGRRLI----DGPAGMWCAQVGYGRREI 75
Query: 415 ---ATLQI-ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
Q L + PA AE + +R +F+ G
Sbjct: 76 VDAMAHQAMVLP---YASPWYMAT--------SPAARLAEKIATLTPGD-LNRIFFTTGG 123
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---- 526
STA++ AL+ + + LG+ +K +++ YHG T
Sbjct: 124 STAVDSALRFSEFYN--------NVLGR--PQKK---RIIVRYDGYHGSTALTAACTGRT 170
Query: 527 ------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
FL P ++ L + +I T
Sbjct: 171 GNWPNFDIAQDRISFLSSPNP-RHAGNRSQEA-------FLDDLVQEFEDRIESLGPDT- 221
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
I A + EP++ A+GG+ ++ P
Sbjct: 222 ---------------------------------------IAAFLAEPIL-ASGGV-IIPP 240
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVI 696
R K C+ I I DEV TGF R G ++ + G VPDI + K +T G +
Sbjct: 241 AGYHARF--KAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV 298
Query: 697 PLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755
PL + AV G++ K +G++YS + CAAA +I+ + I+ +
Sbjct: 299 PLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER----EGIVDQ 354
Query: 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKL 812
R + + + + + V ++G + ++ + + ++
Sbjct: 355 AREMADYF-AAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERC 413
Query: 813 REDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
E G+ +RPLG++ + S P + S+ + D++ ++
Sbjct: 414 FELGLIVRPLGDLCVI-----SPPLIISR---------AQIDEMVAIMRQA 450
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 4e-36
Identities = 83/449 (18%), Positives = 139/449 (30%), Gaps = 100/449 (22%)
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
++F + E A L + VG R + GS A E A+K+A R++
Sbjct: 64 VHGSQFSS--------DVLEEYAGRLARFVGLPT-FRFWAVSGGSEATESAVKLA-RQY- 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
+ + + KV+ SYHG +LG++ A +G
Sbjct: 113 --------HVERGEPGRF---KVITRVPSYHGASLGSLAA------SG---MGARRELYT 152
Query: 547 FLDPPTVF-----MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601
L P + ++ E L + + T
Sbjct: 153 PLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPET---------------------- 190
Query: 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRILVKE-CQNRKIPVIF 659
+ A + EPVV A+ ++R+ ++ C I I
Sbjct: 191 ------------------VAAFMAEPVVGASDAALAPAPGYYERV--RDICDEAGIIFIA 230
Query: 660 DEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
DEV +G R G G PDIA GK L G PLA LA V+++ +G S
Sbjct: 231 DEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS--G 288
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
A +HG +Y+ H + AA + + ++ + L + +
Sbjct: 289 AFMHGFTYAGHPVSVAAGLSVLDIVER----EDLTGAAKERGAQLLAGLQALQARFPQMM 344
Query: 779 RVVALGTLCAIELQAAGCNAGYGSL-YAASLLKKLREDGVYMRPLGNVIYLMCGP---CS 834
+V G L + L + + A+ + + G+ P G
Sbjct: 345 QVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLG 404
Query: 835 SPEVCSQLLLKLYQRLEEFDKVEEKLKSC 863
P + E D + L
Sbjct: 405 PPLSITA---------AEVDGLLALLAGA 424
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 5e-31
Identities = 78/419 (18%), Positives = 135/419 (32%), Gaps = 106/419 (25%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A + H +F E + P ++ A L G RA G+ + E A++MA + +
Sbjct: 72 AGKLDH-LFSEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMA-KLVT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
GK +++ S+HG T A A T G G
Sbjct: 127 --------GKY--------EIVGFAQSWHGMTGAAASA------TY---SAGRKGVGPA- 160
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
F Y ++ ++ + E+ Y +S
Sbjct: 161 -AVGSFAIPAPFTYRPRF--------------ERNGAYDYLAELDYAFDLIDRQSS---- 201
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662
G + A I EP++ ++GG+ + + L ++C+ R + +I DE
Sbjct: 202 ---------------GNLAAFIAEPIL-SSGGIIELPDGYMAALKRKCEARGMLLILDEA 245
Query: 663 FTGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718
TG R G + G PDI K L G +PLAA + + A+ +
Sbjct: 246 QTGVGRTGTMFACQRD----GVTPDILTLSKTLGAG-LPLAAIVTSAAIEERA----HEL 296
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER------RILRELWDLELIQQIS 772
L ++ + L A + + + + R R+ R L DL
Sbjct: 297 GYLFYTTHVSDPLPAAVGLRVLDVVQRDG-----LVARANVMGDRLRRGLLDLM-----E 346
Query: 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVI 826
+ V G L +E+ A + ++ G+ M + G V
Sbjct: 347 RFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVF 405
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-29
Identities = 97/406 (23%), Positives = 151/406 (37%), Gaps = 86/406 (21%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H F YEP LE E++ Q V +A + GS A+E A+K+A R +
Sbjct: 70 LKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAAT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ +A G+YHG T + TG + YS G+ L
Sbjct: 127 --------KRS--------GTIAFSGAYHGRTHYTLAL------TG--KVNPYS-AGMGL 161
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ P L+ + S IF + D+A
Sbjct: 162 MPGHVYR------ALYPCPLHGISEDD---AIASIHRIFKNDAAPEDIA----------- 201
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A++IEPV GG + P F + L C I +I DEV +G R
Sbjct: 202 -------------AIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 669 LG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHG 723
G +E +G PD+ + K + GG PLA V D+ G G
Sbjct: 248 TGTLFAMEQ----MGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG-------LG 295
Query: 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783
+Y+ + + C AA + +K F+ + L++ L I + H + V L
Sbjct: 296 GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG--LLAIAE--KHPEIGDVRGL 351
Query: 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---PLGNVI 826
G + AIEL G + + A ++ + R+ G+ + P NV+
Sbjct: 352 GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVL 397
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 94/414 (22%), Positives = 139/414 (33%), Gaps = 100/414 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE ++ AELL R ++G+ A+E A+K+A R +
Sbjct: 93 ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA-RLAT-- 149
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSG--R 544
G+ V+A +YHG T M A PY + F P+ R
Sbjct: 150 --------GRP--------AVVAFDNAYHGRTNLTMALTAKSMPYKSQF--GPFAPEVYR 191
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
P + L+ E I + + LA
Sbjct: 192 MPASYP-----LRDEPGLTGEEAARRAI------------SRIETQIGAQSLA------- 227
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A+IIEP+ GG + P F L + I DEV T
Sbjct: 228 -----------------AIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT 269
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL 720
GF R G E G VPDI K + GG +PL+A + D+ A
Sbjct: 270 GFARTGAWFASEH----EGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAV------YAG 318
Query: 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHR 775
G +Y + + CAAA ++ ++ +P R + L + +
Sbjct: 319 GLGGTYGGNPVTCAAAVAALGVMRELD-----LPARARAIEASVTS--RLSALAE--EVD 369
Query: 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVI 826
+ V G + AIE+ G +L S+ + GV + G NVI
Sbjct: 370 IIGEVRGRGAMLAIEIVKPGTLEPDAAL-TKSIAAEALSQGVLILTCGTFGNVI 422
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 87/413 (21%), Positives = 141/413 (34%), Gaps = 93/413 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
F H F YE + E L + R+ ++GS A+E A+K+A R +
Sbjct: 90 VGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA-RSHT-- 146
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
K V+A +YHG T M T + Y G
Sbjct: 147 --------HKP--------AVVAFDHAYHGRTNLTMAL------TA--KVMPYK-DGFGP 181
Query: 549 DPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
P ++ + + + + E + + ++ + +LA
Sbjct: 182 FAPEIYRAPLSYPFRDAEFGKELATDGE---LAAKRAITVIDKQIGADNLA--------- 229
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
A++IEP+ GG + F L+ C+ + I DEV TGF
Sbjct: 230 ---------------AVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273
Query: 667 WRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALL 721
R G E G PD+ K + GG+ PL+A + DS V
Sbjct: 274 ARTGAMFACEH----EGIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSG------- 321
Query: 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHRT 776
G +Y + + CAAA +I+ + + R +I+++ L +Q
Sbjct: 322 LGGTYGGNPIACAAALATIETIESEG-----LVARAQQIEKIMKD--RLGRLQA--EDDR 372
Query: 777 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVI 826
+ V G + A+EL AG L +L GV + G NV+
Sbjct: 373 IGDVRGRGAMIAMELVKAGTTEPDADL-TKALCAGAHAAGVIVLSCGTYGNVV 424
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-27
Identities = 78/408 (19%), Positives = 135/408 (33%), Gaps = 98/408 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H + P LE A+ L+ + + +FS++G+ AIE ++K+ +
Sbjct: 72 MQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV-KN---- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSGRGL 546
T + ++A G +HG T G++ A + + P+
Sbjct: 127 ------------TGRK---YIIAFLGGFHGRTFGSISLTASKAVQRSIV--GPF------ 163
Query: 547 FLDPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCS-RDEIFYEERDSSDLASIYSSY 603
P V Y + + Y E + D IF ++A
Sbjct: 164 ---MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVA------ 214
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663
+ EP+ GG + F L K + I ++ DEV
Sbjct: 215 ------------------GIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQ 255
Query: 664 TGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA 719
G R G +E VPD+ K L GG++P+ AT+ + G
Sbjct: 256 MGLGRTGKLFAIEN----FNTVPDVITLAKALGGGIMPIGATIFRKDLDFK-PGM----- 305
Query: 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR 779
H +++ +AL CA +K I KD + N I + EL L
Sbjct: 306 --HSNTFGGNALACAIGSKVIDIVKDLLPHVNEI-GKIFAEELQGL-----------ADD 351
Query: 780 VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 826
V +G +E ++ + + G+ + P G + I
Sbjct: 352 VRGIGLAWGLEYNEKK--------VRDRIIGESFKRGLLLLPAGRSAI 391
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 78/414 (18%), Positives = 122/414 (29%), Gaps = 103/414 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
AA PA+ AE LL + +F +GS A E A + K +
Sbjct: 72 AANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI-VKAT-- 128
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLF 547
G+ V+A G+YHG T+G+M
Sbjct: 129 --------GRS--------GVIAFAGAYHGCTVGSMAFSGHSVQADAAK----------- 161
Query: 548 LDPPTVF--MYNSKWILSLPEWLYSKIVEHKDITFCSRD-EIFYEERDSSDLASIYSSYI 604
+ Y Y + +
Sbjct: 162 --ADGLILLPYPDP---------YRPYRNDPTGDAILTLLTEKLAAVPAGSIG------- 203
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A IEP+ + GG+ + F R C+ I V+ DEV
Sbjct: 204 -----------------AAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV 245
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL 720
G R G E G VPDI GK L GG +PL+A +A + D
Sbjct: 246 GLARSGRLHCFEH----EGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------- 293
Query: 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHR 775
+ + + AA ++ +P R+LR+ L + + H
Sbjct: 294 FAMQTLHGNPISAAAGLAVLETIDRDD-----LPAMAERKGRLLRDG--LSELAK--RHP 344
Query: 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---PLGNVI 826
+ + G C +EL + A L+ + + G+ + GNV+
Sbjct: 345 LIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVL 398
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 66/409 (16%), Positives = 118/409 (28%), Gaps = 81/409 (19%)
Query: 429 AARFGHVMFP---ENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484
A + +VY E + +G +F + G+ A+E ALK A
Sbjct: 83 AELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAA-FD 141
Query: 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544
+ H + + +VL L+G++HG + + T +P + R
Sbjct: 142 WKSRHN------QAHGIDPALGTQVLHLRGAFHGRSGYTLSL------TN--TKPTITAR 187
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
D P + P DE ++ L
Sbjct: 188 FPKFDWP---------RIDAPYMRPG------------LDEPAMAALEAEALRQA----- 221
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
+ + + + EP+ GG P F + + C +IFDEV T
Sbjct: 222 -RAAFETRPHDI----ACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT 275
Query: 665 GFWRLGVETTADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLK 718
G T L PDI +GK + + A V
Sbjct: 276 GCGL-----TGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSR---- 326
Query: 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778
++ + A + ++ + + + LR L+ + V
Sbjct: 327 ---LNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRA--RLDELAADFPA-VVL 380
Query: 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 826
G +CA L L+++L + V + P G + +
Sbjct: 381 DPRGRGLMCAFSLPTTA--------DRDELIRQLWQRAVIVLPAGADTV 421
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 9e-22
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 23/171 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R S + V + + E SPH+ + +E G +S V+ + L +
Sbjct: 60 RNSSLQLDY--ATVN--PYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQAD--- 110
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+VE AGG +P D +LP ILV +LG I+ + +
Sbjct: 111 ---------WVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQV 161
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSSN 319
++ G + V M+ L P+L +P L ++ N
Sbjct: 162 IQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPEN 212
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
+ + +T +GKT+ S L + +A + KP+ +G +
Sbjct: 3 RYFVTGTDTEVGKTVASCALLQAA-----KAAGYRTAGYKPVASGSEKTPE 48
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
+ ++ + L ++ +AV+PH+ A + IE L + + D +
Sbjct: 61 NAYKHKFTA--AEIN--LISFNQAVAPHIIAAKT-----KVDISIENLKQFIEDKYNQDL 111
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ + +E AGG+ +P + Q DL + ++P +LV ++G I+ T+
Sbjct: 112 D--------ILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINE 163
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSS----NDLMEW 324
L + + D + ++ + + + ++
Sbjct: 164 LNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKISRNADYLDFIDLSKILIS 223
Query: 325 FDES 328
+E+
Sbjct: 224 PEEN 227
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
F I +T +GKT +S L N K + LKP+ +G S+
Sbjct: 6 KFFIIGTDTEVGKTYISTKLIEVC-----EHQNIKSLCLKPVASGQSQFSE 51
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 1e-19
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query: 161 SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKM 220
+ V++L L + + ++P AAE G+ ++ + + + + D L+
Sbjct: 82 AGVTQLAG--LARYPQPMAPAAAAEHA--GMALPAR--DQIVRLIAD-LDRPGR------ 128
Query: 221 EILCIVETAGGVASP-GPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279
L +VE AGG+ G D+ ++V LG ++ T E+L +
Sbjct: 129 --LTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQV 186
Query: 280 DVVAVVF----EDHGLVNE-----VPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDES 328
+V + GLV + ++ +R +P D + FD +
Sbjct: 187 SCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAASLDAGDFAAMSAAAFDRN 244
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 27 HPQPLDLPLSH--------PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
H L + + T +GKT+V A L+S+ A K
Sbjct: 8 HHHSSGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAA-----RQAGIDVAVCK 62
Query: 79 PIQTGYPHDSD 89
P+QTG D
Sbjct: 63 PVQTGTARGDD 73
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 68/432 (15%), Positives = 120/432 (27%), Gaps = 96/432 (22%)
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
++L + + E +E E LL KG S+ GS + E A
Sbjct: 85 VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENA 143
Query: 478 LKMAF-------RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530
K F R S + ++ + C + +L+ G++HG T+G +
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLAT---- 199
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
T + + D P K+ L ++ E + + D I
Sbjct: 200 --TH--SKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK-ENQQEEARCLEE-VEDLIVKYR 253
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
+ +A +I+EP+ + GG + F R L
Sbjct: 254 KKKKTVA------------------------GIIVEPI-QSEGGDNHASDDFFRKLRDIS 288
Query: 651 QNRKIPVIFDEVFTGFWR---------LGVETTADLLGCVPDIACYGKLLTGGVIPLAAT 701
+ + DEV TG G++ D+ + K + G
Sbjct: 289 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD-------PADVMTFSKKMMTGG-FFHKE 340
Query: 702 LATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER----- 756
+++ A+ I K +
Sbjct: 341 EFRPNA----PYR-------IFNTWLGDPSKNLLLAEVINIIKRED-----LLSNAAHAG 384
Query: 757 -RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED 815
+L L L+L + + RV GT C+ + L+ R
Sbjct: 385 KVLLTGL--LDLQARYPQF--ISRVRGRGTFCSFDTPDES--------IRNKLISIARNK 432
Query: 816 GVYMRPLG-NVI 826
GV + G I
Sbjct: 433 GVMLGGCGDKSI 444
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Length = 242 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-18
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+ + + +P +A + E D + L + L + + L IVE AGG
Sbjct: 95 YRYHKVSAPLIAQQEEDPNAPID---TDNLTQRLHN-FTKTYD--------LVIVEGAGG 142
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVF----E 287
+ P D + +L+ LG I+ + LK D +
Sbjct: 143 LCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNN 202
Query: 288 DHGLVNEVPLMSYLRNR--VPVLVLPPLPQDSSNDLME 323
+P + R P+++ + + ++
Sbjct: 203 TAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK 240
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 31/212 (14%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A I+EP+ G+ + + + + C+ + + DEV TG R T LL
Sbjct: 215 AFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGR-----TGKLLCVH 268
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAA 735
PD+ GK L+GG P++A LA + + G+ HG +Y + L +
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE-------HGSTYGGNPLAASI 321
Query: 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795
+++ + + N E L +++ + V+ V G LCAIE +
Sbjct: 322 CVEALNVLINEKLCENAEKLGGPFLE----NLKRELKDSKIVRDVRGKGLLCAIEFKNEL 377
Query: 796 CNAGYGSLYAASLLKKLREDGVYMRPL-GNVI 826
N + KL+E+G+ R + I
Sbjct: 378 VN-------VLDICLKLKENGLITRDVHDKTI 402
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 224 VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 282
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAAAAK 738
PDI GK L+GG+ P++A L + + + G+ HG +Y + LGC A
Sbjct: 283 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE-------HGSTYGGNPLGCRVAIA 335
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+++ ++ N ILR +L + V V G L AI ++
Sbjct: 336 ALEVLEEENLAENADKLGIILRN--ELMKLP----SDVVTAVRGKGLLNAIVIKET---- 385
Query: 799 GYGSLYAASLLKKLREDGVYMRPL-GNVI 826
A + +LR++G+ +P G++I
Sbjct: 386 --KDWDAWKVCLRLRDNGLLAKPTHGDII 412
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 6e-13
Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 36/214 (16%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A I+EP+ G+++ F + ++ C+ + + DE+ TG R G D
Sbjct: 183 TAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDN 241
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GDSKLKALLHGHSYSAHALGCAAAAK 738
PD+ GK L GGV P++ A + F G HG ++ + L CA +
Sbjct: 242 VTPDMYILGKALGGGVFPISCAAANRDILGVFEPGS-------HGSTFGGNPLACAVSIA 294
Query: 739 SIKWFKDPQTNHNIIPER-----RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA 793
+++ ++ + + ER L L+ I + + V G IEL
Sbjct: 295 ALEVLEEEK-----LTERSLQLGEKLVG--QLKEID----NPMITEVRGKGLFIGIELNE 343
Query: 794 AGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVI 826
A ++L+ G+ + NVI
Sbjct: 344 P----------ARPYCEQLKAAGLLCKETHENVI 367
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 55/219 (25%), Positives = 82/219 (37%), Gaps = 31/219 (14%)
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+++EP+ GG+ P F + L C + ++FDEV G R G
Sbjct: 197 VMDDHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---- 251
Query: 675 ADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSA 728
DL G PDI K L GG P++A L T + +F VG HG +Y
Sbjct: 252 -DLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS-------HGSTYGG 302
Query: 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788
+ L CA A + P+ I +R+ + L + +G L
Sbjct: 303 NPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQ----HLQAIDEQFDIFSDIRGMGLLIG 358
Query: 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 826
EL+ A L E GV + G +V+
Sbjct: 359 AELKPK------YKGRARDFLYAGAEAGVMVLNAGADVM 391
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
H NV+ EPAL L + +A R F ++G+ A E A K+A R ++
Sbjct: 86 GETLWHT---SNVFTNEPALRLGRKL---IDATFAERVLFMNSGTEANETAFKLA-RHYA 138
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ + K K++A ++HG +L + Y+ GF
Sbjct: 139 CV---------RHSPFKT---KIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-11
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 34/213 (15%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+I+E V GG++ + F + L K C + I +I DE+ G R +
Sbjct: 182 AIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR-----SGKFFAYE 235
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVF-DSF-VGDSKLKALLHGHSYSAHALGCA 734
+PDI K L G+ + A + V +S GD HG +Y + L CA
Sbjct: 236 HAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGD-------HGSTYGGNPLVCA 287
Query: 735 AAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794
+ FK+ + N+ L + L + I+ ++ LG + + L
Sbjct: 288 GVNAVFEIFKEEKILENVNKLTPYLEQ----SLDELINEFDFCKKRKGLGFMQGLSLDK- 342
Query: 795 GCNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 826
S+ A +++K +E+ + + G N +
Sbjct: 343 -------SVKVAKVIQKCQENALLLISCGENDL 368
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y E A+ L R +F+++G+ +IE A+K A RK++F+ G
Sbjct: 73 NLYYNENIAAAAKNL---AKASALERVFFTNSGTESIEGAMKTA-RKYAFNK-------G 121
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +A K S+HG TLGA+ A Y F
Sbjct: 122 VKGGQ------FIAFKHSFHGRTLGALSLTANEKYQKPF 154
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 5e-11
Identities = 47/212 (22%), Positives = 75/212 (35%), Gaps = 34/212 (16%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+ +EP+ G+ F K C ++FDEV G R G L
Sbjct: 186 AVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-----KLFAYQ 239
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAA 735
G VPD+ K L GGV P+ A + + GD HG ++ + L C A
Sbjct: 240 KYGVVPDVLTTAKGLGGGV-PIGAVIVNERA-NVLEPGD-------HGTTFGGNPLACRA 290
Query: 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795
IK + + L + +L + + V V +G + I+ +
Sbjct: 291 GVTVIKELTKEGFLEEVEEKGNYLMK----KLQEMKEEYDVVADVRGMGLMIGIQFRE-- 344
Query: 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 826
+ + K E+ + + P G N I
Sbjct: 345 ------EVSNREVATKCFENKLLVVPAGNNTI 370
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N++ P +E AELL + + +F++ G+ A E A+K+A RK+
Sbjct: 77 NLFWNRPQMELAELL---SKNTFGGKVFFANTGTEANEAAIKIA-RKYGKKK-------S 125
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +L+ S+HG TLG++ A Y F
Sbjct: 126 EKKYR------ILSAHNSFHGRTLGSLTATGQPKYQKPF 158
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 7e-11
Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 36/212 (16%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A+I+EPV GG+ P F R + Q + +I DE+ TG R G
Sbjct: 188 AVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-----KRFAFE 241
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAA 735
VPDI K L GGV PL + V S G HG ++ + L AA
Sbjct: 242 HFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGG-------HGTTFGGNPLAMAA 293
Query: 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795
+I++ + + + ER W +E ++ I ++ V +G + +EL+
Sbjct: 294 GVAAIRYLERTR-----LWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKA 347
Query: 796 CNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 826
A + + +E V G VI
Sbjct: 348 ---------APYIARLEKEHRVLALQAGPTVI 370
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 25/100 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + E L + +R + ++G+ A E ALK A R +
Sbjct: 74 AETLMAM---PQTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFA-RAHT 128
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
+ + A + G T+G++
Sbjct: 129 GRKKFV------------------AAMRGFSGRTMGSLSV 150
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+ G +V+P F + + VI+DEV T F R DL
Sbjct: 203 VAAILVEPI---VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDL 258
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 259 LGVTPDLTALGKVIGGG-LPIGA 280
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ +I+EPV AG M+ + PL F L C +I DEV TGF R+ + D
Sbjct: 201 VACIIVEPV---AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
+PD+ C GK++ GG +P+ A
Sbjct: 257 YHVIPDLTCLGKIIGGG-MPVGA 278
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EP+ G + P F L + ++FDEV TGF R+ +
Sbjct: 200 IAGVILEPI---VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV + F R + + I DEV +GF R+G L
Sbjct: 202 IAAFIAEPV---GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQAL 257
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
L PD+ C K GG +P
Sbjct: 258 LDVQPDLTCLAKASAGG-LPGGI 279
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + + +IFDEV TGF R+
Sbjct: 201 IACVIVEPV---AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ C GK++ GG +P+ A
Sbjct: 257 YGVTPDLTCLGKVIGGG-LPVGA 278
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I EPV G ++ P F + L E + + +I DEV TGF RL +L
Sbjct: 200 IAAIIFEPV---VGNAGVLVPTEDFLKAL-HEAKAYGVLLIADEVMTGF-RLAFGGATEL 254
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK+L GG +P AA
Sbjct: 255 LGLKPDLVTLGKILGGG-LPAAA 276
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV ++ P F L + + +I DEV TGF RLG+E
Sbjct: 204 IAGVIVEPV---IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY 259
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
DI GK++ GG P+ A
Sbjct: 260 FNIEGDIIVLGKIIGGG-FPVGA 281
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
+IIE + GG++ F L + C+ + + +I DEV TG R G +
Sbjct: 175 GIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-----EFYAYQ 228
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGDSKLKALLHGHSYSAHALGCAA 735
PD+ K L GGV P+ A LA V SF G HG ++ + L C A
Sbjct: 229 HFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGS-------HGSTFGGNPLACRA 280
Query: 736 A 736
Sbjct: 281 G 281
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y E A L++ + +F+++G+ ++E A+K+A RK+
Sbjct: 57 VEKLLHV---SNLYENPWQEELAHKLVKHFW--TEGKVFFANSGTESVEAAIKLA-RKYW 110
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
D GK+ + ++ + S+HG T G++ A + GF
Sbjct: 111 RDK-------GKNKWK------FISFENSFHGRTYGSLSATGQPKFHKGF 147
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ G V F +L E +IFDEV T RL ++
Sbjct: 234 CAAILVEPM---LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS--RLSGGGAQEM 288
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG D+ GK + GG + A
Sbjct: 289 LGISADLTTLGKYIGGG-MSFGA 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 1e-08
Identities = 109/669 (16%), Positives = 181/669 (27%), Gaps = 205/669 (30%)
Query: 289 HGLVNEVPLMSY-LRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERI 347
H + E Y ++ + V + FD V D K+I+ + I
Sbjct: 5 HHMDFETGEHQYQYKDILSVF-EDAFVDN--------FDCKD-VQDMPKSILSKEEIDHI 54
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKN-KFIGQQFDACA 406
D LFW ++ EE V + F + N KF+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSK----QEEMV--------QKFVEEVLRINYKFLMSPI---- 98
Query: 407 SWWTQGPDA-TLQIELARDMGYTAARFGHVMFPENVY--EPALECAELLLQ--------- 454
+ P T RD Y V NV +P L+ + LL+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 455 ----GVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
G GK W A S ++ KM F+ F + L + + + +
Sbjct: 156 DGVLGSGKTWVALDVCLSY------KVQCKMDFKIFWLN-------LKNCNSPETVLEML 202
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY-NSKWILSLPE-W 567
L Y D + S + R L P Y N +L L
Sbjct: 203 QKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC--LLVLLNVQ 254
Query: 568 LYSKIVEHKDITFC-----SRD-------------EIFYEERDSS----DLASIYSSYIS 605
+K +++ C +R I + + ++ S+ Y+
Sbjct: 255 -NAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 606 --------QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657
+ L NP ++S I I + + H+ I+ + N P
Sbjct: 313 CRPQDLPREVLTTNP-RRLSI-IAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPA 369
Query: 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLA------TNAVFDS 710
+ ++ F RL V P IP L+ +
Sbjct: 370 EYRKM---FDRLSV---------FPP----------SAHIP-TILLSLIWFDVIKSDVMV 406
Query: 711 FVGDSKLKALLHGH----SYSAHALGCAAAAKSIKWFKDPQTNHNIIPER-RILR--ELW 763
V +L+ + S ++ K ++ H I + I + +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKL----ENEYALHRSIVDHYNIPKTFDSD 462
Query: 764 DLELIQQ-------ISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL------K 810
DL I H L IE + +L+ L +
Sbjct: 463 DLIPPYLDQYFYSHIGHH-----------LKNIE------HPERMTLFRMVFLDFRFLEQ 505
Query: 811 KLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR---------------LEEF-D 854
K+R D S Q LK Y+ + +F
Sbjct: 506 KIRHDS----------TAWNASGSILNTLQQ--LKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 855 KVEEKLKSC 863
K+EE L
Sbjct: 554 KIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 97/713 (13%), Positives = 197/713 (27%), Gaps = 205/713 (28%)
Query: 141 NSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIET 200
+ E + ++ ++ +S ED+ V CK + ++ L+ E E ++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKE-EIDHIIMSKDAVSG 63
Query: 201 LGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCD---LYRPFRLPGILVG 257
L L S+ E +V+ L+ + L P +
Sbjct: 64 T-LRLFWTLLSKQEE---------MVQKFVE-------EVLRINYKFLMSPIKT------ 100
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
S Y + R Y+ V + + V+ + LR L +
Sbjct: 101 --EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQA--------LLELR 148
Query: 318 SNDL-----MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVP 372
+ ++ D + ++Q C M ++FW
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLS-------YKVQ--CKMD---FKIFW---------- 186
Query: 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432
+ + C +V + + + Q D WT D + I+L R
Sbjct: 187 ---LNL--KNCNSPETVLEMLQK--LLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 433 GHVMFPENVYEPALECAELLLQGVGKGWASRA--YF---------------SDNGSTAIE 475
+ YE L L+L V ++A F +D S A
Sbjct: 237 ---LLKSKPYENCL----LVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS-YHGDTLGAMEAQAPSPYTG 534
+ + + + + L K + +L L + + + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 535 FLQQPWYSGRGL---------FLDPP---------TVFMYNSKWILSLPE------WLYS 570
+ + L L+P +VF ++ +P W
Sbjct: 347 WKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDV 399
Query: 571 KIVEHKDIT--FCSRDEIFYEERDSSDLA-SIYSSYISQNLLQNPGLKVSGCIGALIIEP 627
+ + + E+ + SI S Y+ ++ E
Sbjct: 400 IKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLE-LKVKLEN------------EY 443
Query: 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG----VETTADLLGCVPD 683
+H + +VD I + IP D+ F + +G + +
Sbjct: 444 ALHRS----IVDHY--NIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRM 495
Query: 684 IACY-------GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH-ALGCAA 735
+ + K+ A+ N + LK Y +
Sbjct: 496 V--FLDFRFLEQKIRHDSTAWNASGSILNTLQQ-------LK------FYKPYICDNDPK 540
Query: 736 AAKSIKWFKD--PQTNHNII--PERRILRELWDLELIQQIS-----SHRTVQR 779
+ + D P+ N+I +LR + L+ + +H+ VQR
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLR----IALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-04
Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 59/202 (29%)
Query: 2 LRLRRH--HYPDHHRRIL-----LRLFHHSTFHPQPLDLPL-SHPTFQIWSANTSLGKTL 53
L L+ + HR I+ + F P LD SH +G L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----------IGHHL 481
Query: 54 VSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113
+ L V+L D RFL K+ S N S++
Sbjct: 482 KNIEHPERMTLFRM-------VFL-----------DFRFLEQKIRHDSTAWNASGSIL-- 521
Query: 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFA 173
N L K ++ D P + N+ + L EEN I + ++L+
Sbjct: 522 N--TLQQLKFYKPYICDND-PKYERLVNAILDFLPKIEENLICSKY----TDLL------ 568
Query: 174 WEEAVSPHLAAERESGGVVGDS 195
+A E + ++
Sbjct: 569 -------RIALMAEDEAIFEEA 583
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 863 | |||
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 100.0 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 100.0 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 99.98 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.96 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.96 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.95 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.94 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.94 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.94 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.93 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.93 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.92 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.92 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.92 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.92 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.92 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.91 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.91 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.9 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.9 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.9 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.9 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.83 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.89 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.89 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.89 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.89 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.89 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.89 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.89 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.89 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.89 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.89 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.89 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.89 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.89 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.89 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.88 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.88 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.88 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.88 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.88 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.87 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.87 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.87 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.87 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.87 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.87 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.87 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.86 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.86 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.86 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.86 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.85 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.85 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.85 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.85 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.85 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.85 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.84 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.84 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.84 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.84 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.84 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.84 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.84 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.84 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.83 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.83 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.82 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.82 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.82 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.82 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 99.82 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.82 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.81 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.81 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.81 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.81 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.81 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.81 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.8 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.8 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.8 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.8 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.8 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.8 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.79 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.79 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.79 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.78 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.78 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.78 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.78 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.78 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.77 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.77 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.77 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.76 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.76 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.76 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.76 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.76 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.76 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.75 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.75 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.75 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.75 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.75 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.75 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.74 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.74 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.74 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.73 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.73 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.73 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.73 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.73 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.73 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.72 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.72 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.71 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.71 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.71 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.71 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.7 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.7 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.7 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.7 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.69 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.69 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.68 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.68 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.68 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.68 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.68 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.68 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.67 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.67 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.67 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.67 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.67 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.66 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 99.65 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.65 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.64 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.62 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.61 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.6 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.6 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.59 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.58 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.58 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.57 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.57 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.56 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.56 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.55 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.54 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.53 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.51 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.48 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.46 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.45 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.45 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.43 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.42 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.38 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.34 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.33 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.32 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.3 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.3 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.27 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.25 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.25 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.25 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.24 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.2 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 99.2 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.19 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.16 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.14 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.11 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.09 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.09 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.07 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.04 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 98.99 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 98.96 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 98.95 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 98.95 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 98.93 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 98.7 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 98.62 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.6 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 98.59 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 98.58 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 98.58 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.56 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 98.56 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 98.5 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 98.5 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 98.47 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 98.47 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 98.47 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 98.37 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 98.35 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 98.24 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 98.24 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 98.2 | |
| 2woo_A | 329 | ATPase GET3; tail-anchored, membrane protein, targ | 98.15 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 98.14 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 98.09 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 98.04 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 98.01 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 97.96 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 97.93 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 97.91 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 97.89 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 97.88 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.87 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 97.87 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 97.84 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 97.71 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.64 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.38 | |
| 2woj_A | 354 | ATPase GET3; tail-anchored, membrane protein, targ | 97.34 | |
| 3igf_A | 374 | ALL4481 protein; two-domained protein consisting o | 97.31 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 97.28 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 97.27 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.81 | |
| 3io3_A | 348 | DEHA2D07832P; chaperone, membrane traffic, ATPase; | 96.64 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.59 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 96.41 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 96.4 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 96.29 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 96.14 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.94 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 95.73 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.7 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.48 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 95.28 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.16 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 90.91 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 90.87 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.86 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.8 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 89.57 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 89.12 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 89.05 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 88.78 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 85.3 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 84.73 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 84.73 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 84.69 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 84.26 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 83.97 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 83.57 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 83.42 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 82.21 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 81.43 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 81.09 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 80.57 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 80.51 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 80.41 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 80.34 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 80.23 |
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-123 Score=1136.30 Aligned_cols=813 Identities=70% Similarity=1.157 Sum_probs=643.6
Q ss_pred hhHHHHH-HHHhhccCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-----CCceeEEcccccCC
Q 002941 11 DHHRRIL-LRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-----NKKFVYLKPIQTGY 84 (863)
Q Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-----g~~v~~~KPi~~g~ 84 (863)
.||...+ -|-.++.++-..|..++.++++|||+||+|+||||+||+|||++|+ ++ |++|+|||||++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~-----~~~~~~~G~~V~~fKPv~~g~ 81 (831)
T 4a0g_A 7 HHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFL-----LQQPSSSATKLLYLKPIQTGF 81 (831)
T ss_dssp --------------------CCEEECSSCEEEEEESSSSSCHHHHHHHHHHHHH-----SCSSCCTTCEEEEEEEEECST
T ss_pred cccccCccccccccCCCCCCCccCccccccEEEEECCCCCCHHHHHHHHHHHHH-----hcccccCCceEEEEcccccCC
Confidence 3555544 3444555555567788889999999999999999999999999999 88 99999999999999
Q ss_pred CCCCchhHHHhhccccccccCCCccccccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCccc
Q 002941 85 PHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVS 164 (863)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (863)
..++|..++++.+++.+++|. ....+++..+.......+...-.++..++|+.+. |.++... +. ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~n~--da~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~-~~----~~~ 148 (831)
T 4a0g_A 82 PSDSDSRFVFSKLDSLSLRRQ--IPISISNSVLHSSLPAAKSLGLNVEVSESGMCSL------NFRDEKT-VT----GAP 148 (831)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT--CCCEEEEEEEEEEHHHHHHHTCCCCBCTTSEEEE------EEEEEEC-CT----TSC
T ss_pred CcCcchHHHHHhhccccccch--hHHHHHHHHcCCChhhHhhcccCCcccCCceEee------ccccccc-cc----ccc
Confidence 888888888887766655552 4455666555544444333223333444444433 2221110 01 123
Q ss_pred ccccccceeeCCCCChHHHHhhhcCCCCChhHHHHHHHHHHHccccccccccc--cCCCceEEEeCCCcccccCCCCCcH
Q 002941 165 ELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESER--GKMEILCIVETAGGVASPGPSGSLQ 242 (863)
Q Consensus 165 ~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~lvEGagg~~~p~~~~~~~ 242 (863)
...+.++|.|+.|+|||++++++ +..++.+.|.+.+.+..+++ +++++ ...+|++|||||||+++|+..+.++
T Consensus 149 ~~~~~~~~~~~~p~sp~~aa~~~-~~~~~~~~i~~~~~~~l~~~----a~~~~~~~~~~D~vvVEGaGGl~~p~~~~~~~ 223 (831)
T 4a0g_A 149 ELLCKTLYAWEAAISPHLAAERE-NATVEDSVVLQMIEKCLKEE----MECGVKSEKSDLLCLVETAGGVASPGPSGTLQ 223 (831)
T ss_dssp EEEEEEEEECSSSSCHHHHHHHT-TCCCCHHHHHHHHHHHHHHH----C---------CEEEEEECCSSTTCBCTTSCBH
T ss_pred cccccceeeecCCcCHHHHHHHc-CCCCCHHHHHHHHHHHHHhh----hhccccccccCCEEEEECCCCccCCCCCCccH
Confidence 45678999999999999999999 99999999999999844321 00000 0035999999999999999999999
Q ss_pred hHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhcCCCCeeecCCCCCCCchhhh
Q 002941 243 CDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLM 322 (863)
Q Consensus 243 ~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~~~~pvl~~p~~~~~~~~~~~ 322 (863)
+|||+.+++|||||++.++|+||++++++++++.+|++|+|||+|+....+.+.+.++++.++||..||.+|.+...+|.
T Consensus 224 adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~~~l~~~~~v~vLg~lP~~~~~~l~ 303 (831)
T 4a0g_A 224 CDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLI 303 (831)
T ss_dssp HHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHHHHTTTSSCEEEECCCCCCTTCCCH
T ss_pred HHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHHHHHHHHHHhCCCceeeCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999998666666655666666667899
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEE
Q 002941 323 EWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQF 402 (863)
Q Consensus 323 ~~l~~~~~~~~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~yl 402 (863)
+|++.....+..++++|..++.+|+.+++++.+++++++|||||++..+...+|++|++++|.|+|+||.||++++++||
T Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~yl 383 (831)
T 4a0g_A 304 EWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQF 383 (831)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEE
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchhee
Confidence 99999989999999999999999999999999999999999999998776667899999888889999999987777999
Q ss_pred eeecccccccCCCCC-cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHH
Q 002941 403 DACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (863)
Q Consensus 403 D~~sg~~~~~lGh~~-~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA 481 (863)
|++|||||+++|| + ||+|++|+++|++++.|+++.+++++++.+|||+|++++|.+++++|||+||||||||+|||+|
T Consensus 384 D~~sg~~~~~lGh-~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A 462 (831)
T 4a0g_A 384 DACASWWTQGPDP-TFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMA 462 (831)
T ss_dssp ETTHHHHTCCCCH-HHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred eecccHhhcCCCC-CCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHH
Confidence 9999999999999 8 9999999999999999987777899999999999999998665789999999999999999999
Q ss_pred HHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceee
Q 002941 482 FRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561 (863)
Q Consensus 482 ~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 561 (863)
+|+|+.++|.+.. ++ ...+.|++||+++++|||+|++++++|+...|+..+..+|+.++++++++|.+.+.+++++
T Consensus 463 ~r~~~~~~g~~~~--~~--~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 538 (831)
T 4a0g_A 463 FRKFCVDHNFCEA--TE--EEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538 (831)
T ss_dssp HHHHHHTTTC-------------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEE
T ss_pred HHHHHhhcCCCcc--cc--ccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceE
Confidence 7778777765210 00 0001248999999999999999999999887775434567767777888887766678889
Q ss_pred ecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHH
Q 002941 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (863)
Q Consensus 562 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~ 641 (863)
+++|+.|+... ....+|.+..+.|+...+...+...|.+.+++.|++.+...+++++||||+|||+||+||++++|++
T Consensus 539 ~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~ 616 (831)
T 4a0g_A 539 ISLPESFSEIA--PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPL 616 (831)
T ss_dssp EECCTTSCCCC--SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHH
T ss_pred ecCCccccccc--cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHH
Confidence 99997664211 0112333222223222222345566778888888653333467899999999966999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceee
Q 002941 642 FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL 721 (863)
Q Consensus 642 fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~ 721 (863)
||++|+++|++||++||+|||+|||||||++|+++++|+.|||+||||+|||||+|+|++++++++++.|....+.+.+.
T Consensus 617 ~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~ 696 (831)
T 4a0g_A 617 FQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALL 696 (831)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCC
T ss_pred HHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998655556688
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~ 801 (863)
|++||++||++|||++|+|++++++++.+++.++++++++.|.+.+.+.+.++|.|.+|||.|+|+++++..+..+..+.
T Consensus 697 hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~ 776 (831)
T 4a0g_A 697 HGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYA 776 (831)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------
T ss_pred eecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccc
Confidence 99999999999999999999998888888888888877665544555667788999999999999999998654333344
Q ss_pred hHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 802 ~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
...+..+.+.|+++||+++|.|+++||+||+++|++|||+++++|+++++++
T Consensus 777 ~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 777 SLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4467789999999999999999999999999999999999999999887543
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-82 Score=732.21 Aligned_cols=442 Identities=19% Similarity=0.236 Sum_probs=371.4
Q ss_pred hhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH
Q 002941 349 RLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (863)
Q Consensus 349 ~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q 428 (863)
+.+.+..++.+|.|||||++..+.+.+|++|++ |+|+|+||+||| +|||+++|+|++++|| +||+|++|+++|
T Consensus 23 ~~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~r--g~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q 95 (473)
T 4e3q_A 23 KPQSWEARAETYSLYGFTDMPSLHQRGTVVVTH--GEGPYIVDVNGR----RYLDANSGLWNMVAGF-DHKGLIDAAKAQ 95 (473)
T ss_dssp CCCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEE--EETTEEEETTCC----EEEETTTTTTTCTTCS-CCHHHHHHHHHH
T ss_pred CcccHHHHHhhhcCCCCCChhhhccCCCEEEEe--eecCEEEeCCCC----EEEEcccCHHHhhccC-CCHHHHHHHHHH
Confidence 344677889999999999987665667899998 788999999999 9999999999999999 899999999999
Q ss_pred HHhccccc-CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc
Q 002941 429 AARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (863)
Q Consensus 429 ~~~~~~~~-~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~ 507 (863)
++++.+.. +.+.++++..+|||+|++++|.+ +++|+|+||||||||+|||+| |+|+..+|++ + |+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlA-r~~~~~~g~~-~-----------r~ 161 (473)
T 4e3q_A 96 YERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKML-WFLHAAEGKP-Q-----------KR 161 (473)
T ss_dssp HHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CC
T ss_pred HHhcccccccccccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------cc
Confidence 99988753 44567899999999999999866 789999999999999999999 6788887763 4 38
Q ss_pred EEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchh
Q 002941 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (863)
Q Consensus 508 ~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 587 (863)
+||+|+++|||+|++++++|+.+ ++. . +.+|. ++..+++.|++++....
T Consensus 162 ~ii~~~~~yHG~t~~a~s~tg~~-~~~--------~----~~~~~----~~~~~~~~p~~~~~~~~-------------- 210 (473)
T 4e3q_A 162 KILTRWNAYHGVTAVSASMTGKP-YNS--------V----FGLPL----PGFVHLTCPHYWRYGEE-------------- 210 (473)
T ss_dssp EEEEETTCCCCSSHHHHHHSCCG-GGG--------G----GTCSC----TTEEEECCCCHHHHSCT--------------
T ss_pred eEEEeeceECCCccccccccccc-ccc--------c----cCCCC----CcccccCCCcccccccc--------------
Confidence 99999999999999999999854 221 1 11222 35677888876642100
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccc
Q 002941 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (863)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfG 667 (863)
....+.+...+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++|+++|++||+|||+|||+||||
T Consensus 211 --~~~~~~~~~~~~~~l~~~i~~----~~~~~iAavi~EPi-qg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfG 283 (473)
T 4e3q_A 211 --GETEEQFVARLARELEETIQR----EGADTIAGFFAEPV-MGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFG 283 (473)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSS
T ss_pred --cchhhHHHHHHHHHHHHHHHh----hCCCceEEEEeCCc-cCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCC
Confidence 011122333445566666653 56789999999998 99999999999999999999999999999999999999
Q ss_pred ccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcCh
Q 002941 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (863)
Q Consensus 668 RtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~ 746 (863)
|||++|+++++|++|||+|+||+|+|||+|+|++++++++++.+... .....+.|++||+|||++||||+|+|++++++
T Consensus 284 RtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~ 363 (473)
T 4e3q_A 284 RTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNE 363 (473)
T ss_dssp TTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHS
T ss_pred cccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999988642 11235679999999999999999999999988
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecC
Q 002941 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 747 ~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g 823 (863)
++.+++.+.++++++.| .+ +.++|.|++|||.|+|++|++..+. ++.++. ......+.+.|+++||++++.|
T Consensus 364 ~l~~~~~~~g~~l~~~L----~~-l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g 438 (473)
T 4e3q_A 364 GLAENVRRLAPRFEERL----KH-IAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLG 438 (473)
T ss_dssp SHHHHHHHHHHHHHHHH----HH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET
T ss_pred cHHHHHHHHHHHHHHHH----HH-HhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecC
Confidence 88888888888887755 33 4567889999999999999998764 223332 3457789999999999999999
Q ss_pred CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.++|.||+++|++|||+++++|+++|+++.
T Consensus 439 ~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 439 QSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-75 Score=671.37 Aligned_cols=399 Identities=23% Similarity=0.242 Sum_probs=331.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++.|..+...++++..+|+|+|+++
T Consensus 47 P~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~ 119 (456)
T 4atq_A 47 PVYVED--ADGGIIRDVDGN----SFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRL 119 (456)
T ss_dssp SSCEEE--EETTEEEETTSC----EEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHH
T ss_pred CCeEEe--eecCEEEeCCCC----EEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHh
Confidence 456776 788999999999 9999999999999999 899999999999999998876667789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC-CCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~-~~~ 534 (863)
+|.+.+++|+|+||||||||+|||+| |.| +|| ++||+|+++|||+|++++++++... ++.
T Consensus 120 ~p~~~~~~v~f~~sGsEA~e~AlklA-r~~-------t~r-----------~~ii~~~~~yHG~t~~als~t~~~~~~~~ 180 (456)
T 4atq_A 120 TPGDHAKRTVLFNSGAEAVENAVKVA-RLA-------TGR-----------DAVVAFDHAYHGRTNLTMALTAKAMPYKT 180 (456)
T ss_dssp SSCSSCEEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCCCCCcEEEEeCChHHHHHHHHHHH-hhh-------hcC-----------CeEEEEecccCCccccccccccCcccccc
Confidence 98655789999999999999999999 666 454 8999999999999999999987553 221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.++++ .+++.++|+|+.++.. ....++ .+. .....+.+++ .
T Consensus 181 --------~~~p~--------~~~~~~~p~~~~~~~~---------------~~~~~~-~~~----~~~~~~~~e~---~ 221 (456)
T 4atq_A 181 --------NFGPF--------APEVYRMPMSYPFREE---------------NPEITG-AEA----AKRAITMIEK---Q 221 (456)
T ss_dssp --------TSCSC--------CSSEEEECCCCGGGCS---------------STTCCH-HHH----HHHHHHHHHH---H
T ss_pred --------CCCCc--------cccceecccccccccC---------------CCcccH-HHH----HHHHHHHHHH---h
Confidence 11221 1345667777544210 000011 111 1222223332 2
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||++|||
T Consensus 222 ~~~~~iAAvivEPi-qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg 300 (456)
T 4atq_A 222 IGGDQVAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGG 300 (456)
T ss_dssp TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTT
T ss_pred hcCCceEEEEeccc-cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCc
Confidence 35679999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc-
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS- 773 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~- 773 (863)
+|+|++++++++++.+.. ..|++||+|||++||||+|+|++++++++.+++.+.++++.+.|+ ++.++
T Consensus 301 -~P~~av~~~~~i~~~~~~------~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~----~l~~~~ 369 (456)
T 4atq_A 301 -LPLSAITGRADLLDAVHP------GGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLR----ELAAEL 369 (456)
T ss_dssp -SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH----HHHHHC
T ss_pred -CCceeeEecHHHHhcccc------cCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHH----HHHHhc
Confidence 799999999999998864 258999999999999999999999988888888888888877654 34443
Q ss_pred ----CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 774 ----HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 774 ----~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
+|.|++|||.|+|++|++.++..+ .+....+..+...|+++||++.+. ++++||.||+++|+++||+++++|
T Consensus 370 ~~~~~~~v~~VRG~Gl~~giel~~~~~~-~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l 448 (456)
T 4atq_A 370 SAGGGSVVGDIRGRGAMLAIELVQPGSK-EPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVL 448 (456)
T ss_dssp C-----CEEEEEEETTEEEEEEBCTTSC-CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred ccccCCceEEeeecceEEEEEEecCCCC-CcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999876522 334556788999999999999865 489999999999999999999999
Q ss_pred HHHHHH
Q 002941 847 YQRLEE 852 (863)
Q Consensus 847 ~~~l~~ 852 (863)
+++|+.
T Consensus 449 ~~al~a 454 (456)
T 4atq_A 449 AAAIKA 454 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-68 Score=612.31 Aligned_cols=419 Identities=16% Similarity=0.187 Sum_probs=344.3
Q ss_pred hHHHHHHHHHHHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeeccccc
Q 002941 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (863)
Q Consensus 331 ~~~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~ 410 (863)
..++.+....+++.++.+++..+.+++.+++...-+........-|++|++ |+|+|+||+||| +|||+++|||+
T Consensus 25 ~~~~~~~~~~~~~~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~ 98 (454)
T 4ao9_A 25 AIDQALADAYRRFTDANPASQRQFEAQARYMPGANSRSVLFYAPFPLTIAR--GEGAALWDADGH----RYADFIAEYTA 98 (454)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEE--EETTEEEETTCC----EEEESSGGGGT
T ss_pred hhhhhHHHHHHHHhhcCcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEE--eecCEEEECCCC----EEEEccccHHh
Confidence 345556667788999999999999999887743222211111223667776 788999999999 99999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 411 ~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
+++|| +||+|++|+.+|+++..+.. ..++...+|+|+|++.+|. +++|+|+||||||||.|||+| |.|
T Consensus 99 ~~lGH-~hp~v~~Av~~q~~~~~~~~---~~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklA-r~~----- 166 (454)
T 4ao9_A 99 GVYGH-SAPEIRDAVIEAMQGGINLT---GHNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAA-LHF----- 166 (454)
T ss_dssp TTTCS-CCHHHHHHHHHHHHTCSCCC---SEESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHH-HHH-----
T ss_pred hcccC-CCHHHHHHHHHHHhcCCCcc---CCcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHH-Hhc-----
Confidence 99999 89999999999999876643 4577889999999999984 799999999999999999999 667
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
||| ++||.|+++|||+|.++++.++...+. . . ...+|
T Consensus 167 --tgr-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~------------------~-----~--~~~~p----- 203 (454)
T 4ao9_A 167 --TGR-----------RKIVVFSGGYHGGVLGFGARPSPTTVP------------------F-----D--FLVLP----- 203 (454)
T ss_dssp --HTC-----------CEEEEETTCBCSTTCBBSSSBCTTSCC------------------S-----E--EEEEC-----
T ss_pred --ccC-----------CeEEEEeCCcCCccccccccccCccCC------------------C-----C--cccCC-----
Confidence 464 899999999999999887765432111 0 0 01112
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.+| .+.+++.|++ +++++||||+||| ||++|+++|+++||++|+++|
T Consensus 204 -------------------~nd--------~~~l~~~l~~-----~~~~iAavIvEPv-~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 204 -------------------YND--------AQTARAQIER-----HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp -------------------TTC--------HHHHHHHHHH-----TGGGEEEEEECSE-ESTTTCEECCHHHHHHHHHHH
T ss_pred -------------------Cch--------HHHHHHHHhh-----cCCceEEEEeccc-cCCCCccCCchhhHHHHHHHH
Confidence 123 2456666754 4678999999998 999999999999999999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p 730 (863)
++||++||+||||| ||+|++|+++++|++|||+|+||+|||| +|+|++++++++++.+.... ..+.|++||+|||
T Consensus 251 ~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~~--~~~~h~~T~~gnP 325 (454)
T 4ao9_A 251 TQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRT--GPLAHSGTFNNNV 325 (454)
T ss_dssp HHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTTT--CSCCCCCTTTTCH
T ss_pred hhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhcc--CCccccCCCCCCH
Confidence 99999999999999 5999999999999999999999999999 79999999999999986532 3467999999999
Q ss_pred HHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC-----CCchHHH
Q 002941 731 LGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-----GYGSLYA 805 (863)
Q Consensus 731 la~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~-----~~~~~~~ 805 (863)
++|||++|+|++++++++++++.+++++|++.| .++.++++.+.+|||.|+|++++|.+.+... .......
T Consensus 326 la~AAala~L~~l~~~~~~~~~~~~g~~l~~~L----~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~ 401 (454)
T 4ao9_A 326 MTMAAGYAGLTKLFTPEAAGALAERGEALRARL----NALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLR 401 (454)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH----HHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH----HHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHH
Confidence 999999999999999999999999888888755 5567788999999999999999997653111 1123456
Q ss_pred HHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 806 ASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 806 ~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
..++..|+++||++.|.++ +.+++.+|++|||+++++|+++|.++..
T Consensus 402 ~~~~~~ll~~Gv~~~p~~~---~~~s~~~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 402 QLLFFHLLNEDIYSSPRGF---VVLSLPLTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp HHHHHHHHHTTEECCTTCE---EECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHCCEEEcCCCC---EEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 6788999999999998774 3467789999999999999999988654
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-65 Score=588.89 Aligned_cols=440 Identities=19% Similarity=0.222 Sum_probs=364.7
Q ss_pred cChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHH
Q 002941 351 CDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAA 430 (863)
Q Consensus 351 ~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~ 430 (863)
.++.+.+++++||||+++..+....|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~G~----~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~ 84 (476)
T 3i5t_A 12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTH--AEGIYVHTEDGR----RLIDGPAGMWCAQVGY-GRREIVDAMAHQAM 84 (476)
T ss_dssp -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHHH
T ss_pred hHHHhhcccccccCcccccccccCCCeeEEE--eecCEEEECCCC----EEEECCCchhhccCCC-CCHHHHHHHHHHHH
Confidence 3567788899999999987766666788887 788999999999 9999999999999999 89999999999999
Q ss_pred hcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEE
Q 002941 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (863)
Q Consensus 431 ~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II 510 (863)
++.+.....+.++...+|+++|++++|.+ .++|+|+|||+|||+.|||++ +.|+..+|.+ || .+||
T Consensus 85 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a-~~~~~~~g~~-~~-----------~~vi 150 (476)
T 3i5t_A 85 VLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFS-EFYNNVLGRP-QK-----------KRII 150 (476)
T ss_dssp HCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-TC-----------CEEE
T ss_pred hccCcccCccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-CC-----------CEEE
Confidence 98775433578999999999999999754 689999999999999999999 5677777763 43 7899
Q ss_pred EecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 511 ~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
+++++|||.+.+++++++.+.|+..+ . ++ .+++.++++|..|++ ++
T Consensus 151 ~~~~~yHg~~~~~~~~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~----------------~~-- 196 (476)
T 3i5t_A 151 VRYDGYHGSTALTAACTGRTGNWPNF--------D----IA----QDRISFLSSPNPRHA----------------GN-- 196 (476)
T ss_dssp EETTCCCCSSHHHHHTCCCGGGCTTS--------C----CC----CTTEEEECCCCGGGC----------------TT--
T ss_pred EEcCCcCcCChhhccccCChhhcccc--------C----CC----CCCcEEeCCCccccc----------------CC--
Confidence 99999999999999998876654321 1 11 135567777765521 11
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
.+.+.+...+.+.||+.+++ .+++++++||+||+ ++++|+++++++||++|+++|++||++||+|||||||||+|
T Consensus 197 ~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~-~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G 271 (476)
T 3i5t_A 197 RSQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPI-LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG 271 (476)
T ss_dssp SCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred CchHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc
Confidence 12223444556778877753 23468999999998 99999999999999999999999999999999999999999
Q ss_pred Ccchhh-hcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 671 VETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 671 ~~~a~e-~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
++|+++ ++|+.||++||||+|+|||+|+|++++++++++.+.... ..+.+.|++||++||++|+|++++|++++++++
T Consensus 272 ~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~ 351 (476)
T 3i5t_A 272 EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGI 351 (476)
T ss_dssp SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHH
Confidence 999999 999999999999999999999999999999999987421 123467899999999999999999999977778
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc--hHHHHHHHHHHHHCCcEEEecCCE
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG--SLYAASLLKKLREDGVYMRPLGNV 825 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~--~~~~~~l~~~l~e~GV~~~p~g~~ 825 (863)
.++++++++++++.| . .+.++|.+..+++.|+|+++++.++. +..++. ...+..+++.|+++||++++.|+.
T Consensus 352 ~~~~~~~~~~l~~~L----~-~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~ 426 (476)
T 3i5t_A 352 VDQAREMADYFAAAL----A-SLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDL 426 (476)
T ss_dssp HHHHHHHHHHHHHHH----H-TTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEETTE
T ss_pred HHHHHHHHHHHHHHH----H-HHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecCCE
Confidence 888888888887754 3 24578899999999999999998643 122221 124667889999999999999999
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+||+||+++|+++|++++++|+++++++.+
T Consensus 427 iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 427 CVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987653
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-65 Score=590.85 Aligned_cols=434 Identities=19% Similarity=0.298 Sum_probs=357.8
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++||||+++..+....|.++++ |+|+++||.||+ +|||+++|+|++++|| +||+|++|+.+|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~l~d~~G~----~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~ 87 (472)
T 3hmu_A 15 LQALDAAHHLHPFSANNALGEEGTRVITR--ARGVWLNDSEGE----EILDAMAGLWCVNIGY-GRDELAEVAARQMREL 87 (472)
T ss_dssp HHHHHHHHEECTTEEHHHHHHHCCEEEEE--EEBTEEEETTCC----EEECTTHHHHTCTTCB-CCHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccCCcccccccccCCCeeEEE--eecCEEEECCCC----EEEECCCchhhccCCC-CCHHHHHHHHHHHHhc
Confidence 44566788999999865443335778887 788999999999 9999999999999999 8999999999999998
Q ss_pred cc-ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 433 GH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 433 ~~-~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
.+ ..+..++++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.|+..+|.+ +| .+||+
T Consensus 88 ~~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a-~~~~~~~g~~-~~-----------~~ii~ 153 (472)
T 3hmu_A 88 PYYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMV-RTYWQNKGQP-EK-----------TVIIS 153 (472)
T ss_dssp SCCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-TC-----------CEEEE
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHHHhcCCC-CC-----------CEEEE
Confidence 73 3344578899999999999999754 689999999999999999999 5677777653 43 78999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
++++|||++.+++++++.+.|+.. ++ + .+++.+++.|.+|++.+ + .
T Consensus 154 ~~~~yHg~t~~~~~~~~~~~~~~~--------~~-----~----~~~~~~v~~p~~~~~~~--------------~---~ 199 (472)
T 3hmu_A 154 RKNAYHGSTVASSALGGMAGMHAQ--------SG-----L----IPDVHHINQPNWWAEGG--------------D---M 199 (472)
T ss_dssp ETTCCCCSSHHHHHHSCCHHHHHT--------TC-----C----CSSEEEECCCCHHHHCT--------------T---C
T ss_pred EcCcCCCccHHhhhccCChhhccc--------cC-----C----CCCcEEeCCCccccCCc--------------c---c
Confidence 999999999999999886554321 11 1 13566778886653210 0 1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+.+.+...+.+.|++.+++ .+++++++||+||+ ++++|++++|++||++|+++|++||++||+|||||||||+|+
T Consensus 200 ~~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv-~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~ 274 (472)
T 3hmu_A 200 DPEEFGLARARELEEAILE----LGENRVAAFIAEPV-QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN 274 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc
Confidence 2123334446777777753 23578999999997 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|+.||++||||+||||++|+|++++++++++.+.. ..+.|++||++||++|+|++++|++++++++.++
T Consensus 275 ~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~----~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~ 350 (472)
T 3hmu_A 275 WFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK----DEFNHGYTYSGHPVAAAVALENLRILEEENILDH 350 (472)
T ss_dssp SCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT----SCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhccc----CCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999998999999999999999842 2357899999999999999999999977778888
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCc---hHHHHHHHHHHHHCCcEEEecCCEE
Q 002941 752 II-PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYG---SLYAASLLKKLREDGVYMRPLGNVI 826 (863)
Q Consensus 752 l~-~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~---~~~~~~l~~~l~e~GV~~~p~g~~l 826 (863)
++ ++++++++.| +.+.++|.+.++++.|+|+++++..+. +..++. ...+..+++.|+++||++++.|+.+
T Consensus 351 ~~~~~~~~l~~~L-----~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~i 425 (472)
T 3hmu_A 351 VRNVAAPYLKEKW-----EALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRM 425 (472)
T ss_dssp HHHTHHHHHHHHH-----HGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEETTEE
T ss_pred HHHHHHHHHHHHH-----HHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecCCEE
Confidence 88 8887777754 234568899999999999999997542 111211 2346788999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
||+||+++|++++++++++|+++++++.+
T Consensus 426 Ri~p~~~~t~e~i~~~l~~l~~~l~~~~~ 454 (472)
T 3hmu_A 426 IISPPLVITPAEIDEMFVRIRKSLDEAQA 454 (472)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-61 Score=554.66 Aligned_cols=438 Identities=18% Similarity=0.278 Sum_probs=341.7
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+++.+++||||+++..+....|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~ 81 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTR--GEGVYLWDSEGN----KIIDGMAGLWCVNVGY-GRKDFAEAARRQMEE 81 (459)
T ss_dssp -------------------------CCEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEE--eecCEEEECCCC----EEEECCCchhcccCCC-CCHHHHHHHHHHHHh
Confidence 466778899999999987665556778887 788999999999 9999999999999999 899999999999999
Q ss_pred ccc-ccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEE
Q 002941 432 FGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (863)
Q Consensus 432 ~~~-~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II 510 (863)
+.+ ..+..++++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.|+..+|.+ + +.+||
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~-~~~~~~~g~~-~-----------~~~vi 147 (459)
T 4a6r_A 82 LPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMV-RRYWDVQGKP-E-----------KKTLI 147 (459)
T ss_dssp CSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------CCEEE
Confidence 773 3344578899999999999998754 689999999999999999999 5677666653 3 37899
Q ss_pred EecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 511 ~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
+++++|||.+.+++++++.+.|+..+ . +. ..++.+++.|.+|++.. +
T Consensus 148 ~~~~~yhg~~~~~~~~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~~~--------------~--- 194 (459)
T 4a6r_A 148 GRWNGYHGSTIGGASLGGMKYMHEQG--------D----LP----IPGMAHIEQPWWYKHGK--------------D--- 194 (459)
T ss_dssp EETTCCCCSSHHHHHHSCCTTTC-----------C----CS----CSSEEEECCCCHHHHCT--------------T---
T ss_pred EECCCcCCccHHHHhhcCChhhcccc--------C----CC----CCCCEEeCCCccccCCc--------------c---
Confidence 99999999999999999877665321 1 11 13556778776653210 0
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
.|.+.....+.+.|++.+.+ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|
T Consensus 195 ~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G 269 (459)
T 4a6r_A 195 MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPI-QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCHHHHHHHHHHHHHHHHHH----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 12123333445677777753 23568999999997 99999999999999999999999999999999999999999
Q ss_pred CcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 671 ~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
++|+++++++.||++||||+|+||++|+|++++++++++.+... ..+.+++||++||++|+|++++|+.++++++.+
T Consensus 270 ~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 346 (459)
T 4a6r_A 270 EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG---GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346 (459)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHH---CTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcC---CCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999989999999999999998631 124688999999999999999999987777888
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCC--chHHHHHHHHHHHHCCcEEEecCCEE
Q 002941 751 NII-PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGY--GSLYAASLLKKLREDGVYMRPLGNVI 826 (863)
Q Consensus 751 ~l~-~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~--~~~~~~~l~~~l~e~GV~~~p~g~~l 826 (863)
+++ ++++++++.| .+.+.++|.+..+++.|+|+++++.++. +..++ ....+..+++.|+++||++++.|+.+
T Consensus 347 ~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~i 422 (459)
T 4a6r_A 347 RVKDDIGPYMQKRW----RETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHI 422 (459)
T ss_dssp HHHHTHHHHHHHHH----HHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEETTEE
T ss_pred HHHHHHHHHHHHHH----HHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCCCEE
Confidence 888 7777777654 3445678899999999999999997543 11221 23356788999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
||+||+++|++++++++++|+++++++.+
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-61 Score=554.00 Aligned_cols=441 Identities=20% Similarity=0.272 Sum_probs=357.8
Q ss_pred ChhhhhcccccccCCCCCCCCCCC--eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHH
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEA--VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~--~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~ 429 (863)
++.+.+.+++||||+++..+.... |.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~G~----~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~ 80 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAG--GEGVTVWDNNGR----KSIDAFAGLYCVNVGY-GRQKIADAIATQA 80 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHH
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEE--eeccEEEECCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHH
Confidence 566778889999999865432222 367776 788999999999 9999999999999999 8999999999999
Q ss_pred Hhcccc-cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccE
Q 002941 430 ARFGHV-MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (863)
Q Consensus 430 ~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~ 508 (863)
+++.+. ....++++...+|+++|+++++.+ .++|+|+|||+|||+.|+|++ +.|+..+|++ | +.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~-~~~~~~~g~~-~-----------~~~ 146 (460)
T 3gju_A 81 KNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLI-WYYNNVLGRP-E-----------KKK 146 (460)
T ss_dssp HHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCE
T ss_pred HhccccccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------CCE
Confidence 997643 334577899999999999998754 689999999999999999999 5677776653 3 378
Q ss_pred EEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhh
Q 002941 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (863)
Q Consensus 509 II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 588 (863)
||+++++|||.+.+++++++.+.|+..+ . +. ..++.+++.|.+|++.+.
T Consensus 147 vi~~~~~yhg~~~~~~~~~~~~~~~~~~--------~----~~----~~~~~~~~~p~~~~~~~~--------------- 195 (460)
T 3gju_A 147 IISRWRGYHGSGVMTGSLTGLDLFHNAF--------D----LP----RAPVLHTEAPYYFRRTDR--------------- 195 (460)
T ss_dssp EEEETTCCCCSSHHHHHHCCCGGGTTTT--------T----CS----CTTEEEECCCCGGGCSCT---------------
T ss_pred EEEECCCcCCCCHHHhhccCCccccccc--------C----CC----CCCCEEeCCCccccCCcc---------------
Confidence 9999999999999999998866554321 1 11 135567777766532110
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccc
Q 002941 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (863)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR 668 (863)
..+.+++...+.+.|++.+++ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||
T Consensus 196 -g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 196 -SMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPI-LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -ccChhHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 011122333445777777753 24568999999997 999999999999999999999999999999999999999
Q ss_pred cCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcChh
Q 002941 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 669 tG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~ 747 (863)
+|++|+++++|+.||++||||+|+|||+|+|++++++++++.+... .+...+.|++||++||++|+|++++|+.+++++
T Consensus 270 ~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 349 (460)
T 3gju_A 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD 349 (460)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988999999999999998521 001235688999999999999999999997777
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCC--chHHHHHHHHHHHHCCcEEEecC-
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGY--GSLYAASLLKKLREDGVYMRPLG- 823 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~--~~~~~~~l~~~l~e~GV~~~p~g- 823 (863)
+.++++++++++++.+ .+.+.++|.+..+++.|+|+++++.++. ....+ ....+..+.+.|+++||++++.+
T Consensus 350 ~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 425 (460)
T 3gju_A 350 LVTNAGETGAYFRAEL----AKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQ 425 (460)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSS
T ss_pred HHHHHHHHHHHHHHHH----HHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCC
Confidence 8888888888877754 4566788999999999999999998543 11222 12346788999999999999976
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+||+||+++|+|++++++++|+++++++.
T Consensus 426 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 426 GDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-60 Score=545.74 Aligned_cols=419 Identities=27% Similarity=0.378 Sum_probs=341.5
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEc-CCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
+.+++.+++||||+++... ...|.++++ |+|+|+||. ||++ .+|||+++|+|++++|| +||+|++|+.+|+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~G~~l~d~~dG~~--~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~ 106 (457)
T 3tfu_A 33 IIAVDGAHLWHPYSSIGRE-AVSPVVAVA--AHGAWLTLIRDGQP--IEVLDAMSSWWTAIHGH-GHPALDQALTTQLRV 106 (457)
T ss_dssp HHHHHHHHBCCTTCCSSCC-SSCCEEEEE--EEBTEEEEEETTEE--EEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccccccccc-CCCCceEEe--eecCEEEEccCCCe--eEEEECCCcHhhhccCC-CCHHHHHHHHHHHHh
Confidence 4456678899999986211 245778887 788999999 9872 16999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+.++..++++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.|+..+|.+ || .+||+
T Consensus 107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a-~~~~~~~g~~-g~-----------~~ii~ 172 (457)
T 3tfu_A 107 MNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMA-LQYWRGRGLP-GK-----------RRLMT 172 (457)
T ss_dssp CSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-TC-----------CEEEE
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHH-HHHHHhcCCC-CC-----------ceEEE
Confidence 8877655678999999999999999754 689999999999999999999 5677666652 43 78999
Q ss_pred ecCCCccCccccceecC-CCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 512 LKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
++++|||.+.+++++++ ...|+..+ .+. ..++.+++.|... +
T Consensus 173 ~~~~yhg~~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~p~~~------------------~--- 215 (457)
T 3tfu_A 173 WRGGYHGDTFLAMSICDPHGGMHSLW--------TDV--------LAAQVFAPQVPRD------------------Y--- 215 (457)
T ss_dssp ETTCCCCSSHHHHTTSCCC--------------------------CCCCEEECCCCSS------------------C---
T ss_pred EcCCcCCccHHhhcccCCcccccccc--------cCC--------CCCceEecCCCcc------------------c---
Confidence 99999999999999865 33333211 111 0223344444211 0
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc-ccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP-VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP-Viqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt 669 (863)
+ ....+.+++.+++ +++++++||+|| + ||++|+++++++|+++|+++|++||++||+|||++||||+
T Consensus 216 -~-----~~d~~~le~~l~~-----~~~~~aavi~ep~~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~ 283 (457)
T 3tfu_A 216 -D-----PAYSAAFEAQLAQ-----HAGELAAVVVEPVV-QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRT 283 (457)
T ss_dssp -C-----HHHHHHHHHHHHH-----HGGGEEEEEECSSE-ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred -C-----HHHHHHHHHHHHh-----CCCCEEEEEEeCCC-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccc
Confidence 0 0113567777753 346899999999 6 9999999999999999999999999999999999999999
Q ss_pred CCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 670 GVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 670 G~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
|++|+++++|+.||++||||+|+|||+|+|++++++++++.+... +.+.+.|++||++||++|++++++|++++++++.
T Consensus 284 G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~-~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~ 362 (457)
T 3tfu_A 284 GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG-AAGALMHGPTFMANPLACAVSVASVELLLGQDWR 362 (457)
T ss_dssp SSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHS-SSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred cchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhcc-CCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999988999999999999998521 1134578999999999999999999999887888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++++++++++++.| .+ +.+++.+.++++.|+|+++++.++. .+.++.+.|+++||+++|.++.+|++
T Consensus 363 ~~~~~~~~~l~~~L----~~-l~~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~~~l~~~Gv~v~~~~~~lRi~ 429 (457)
T 3tfu_A 363 TRITELAAGLTAGL----DT-ARALPAVTDVRVCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFRNLVYAM 429 (457)
T ss_dssp HHHHHHHHHHHHHH----GG-GGGSTTEEEEEECSSCEEEEESSCC--------CHHHHHHHHHHTTEECCCBTTEEEEC
T ss_pred HHHHHHHHHHHHHH----HH-HhcCCCeeeeecCCeEEEEEECCcc--------cHHHHHHHHHHCCeEEEecCCEEEEE
Confidence 88888877777654 22 3467889999999999999997542 15678999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
||+++|+|++++++++|+++++++.
T Consensus 430 p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 430 PPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-59 Score=533.91 Aligned_cols=436 Identities=28% Similarity=0.420 Sum_probs=333.4
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+.+.+++||||+++..+ ...|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~--g~G~~v~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~ 75 (448)
T 3dod_A 4 DLIEKSKKHLWLPFTQMKDY-DENPLIIES--GTGIKVKDINGK----EYYDGFSSVWLNVHGH-RKKELDDAIKKQLGK 75 (448)
T ss_dssp HHHHHHHHHBCCTTCCHHHH-HHSCCEEEE--EEBTEEEETTSC----EEEETTHHHHTCSSCB-SCHHHHHHHHHHHTT
T ss_pred HHHHhhhhcccccccccccc-cCCCceEEE--eeeCEEEECCCC----EEEECCcchhhccCCC-CCHHHHHHHHHHHHh
Confidence 35567778999999986444 224667776 788999999999 9999999999999999 799999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+.+...+.++...+|+++|++++|.+ .++|+|+|||+|||+.|+|++ +.++...|.+ + +.+||+
T Consensus 76 ~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~-~~~~~~~G~~-~-----------~~~vi~ 141 (448)
T 3dod_A 76 IAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMA-FQYWKNIGKP-E-----------KQKFIA 141 (448)
T ss_dssp CSCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCEEEE
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhhCCC-C-----------CCEEEE
Confidence 8775545677899999999999998754 689999999999999999999 4565555532 1 378999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
++++|||.+.+++++++...++..+ .+. ..++.+++.|++|+.. ..
T Consensus 142 ~~~~yhg~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~------------------~~ 187 (448)
T 3dod_A 142 MKNGYHGDTIGAVSVGSIELFHHVY--------GPL--------MFESYKAPIPYVYRSE------------------SG 187 (448)
T ss_dssp EC---------------------------------------------CEEECCCCCTTSS------------------SC
T ss_pred ECCCCCCccHHHHHhcCCccccccc--------cCC--------CCCceEeCCCccccCC------------------cc
Confidence 9999999999999998866554321 111 1234566777655210 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc-cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH-AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq-g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
+...+.....+.||+.++. +++++++||+||+ + +++|+++++++|+++|+++|++||++||+||||+||||+|
T Consensus 188 ~~~~~~~~d~~~le~~l~~-----~~~~~a~vi~ep~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g 261 (448)
T 3dod_A 188 DPDECRDQCLRELAQLLEE-----HHEEIAALSIESM-VQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG 261 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----HGGGEEEEEEESS-EESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred chhhhhHHHHHHHHHHHHh-----CCCCEEEEEEeCc-ccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCccc
Confidence 1111222335677777752 3468999999998 7 9999999999999999999999999999999999999999
Q ss_pred CcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcC-CccceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 671 ~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~-~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
.+|+++++|+.||++||||++++||+|+|++++++++++.+... .....+.+++||++||++|+|++++|+.++++++.
T Consensus 262 ~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 341 (448)
T 3dod_A 262 KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIV 341 (448)
T ss_dssp SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999999999977999999999999988641 01123568899999999999999999998777788
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCchH--HHHHHHHHHHHCCcEEEecCCEE
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGSL--YAASLLKKLREDGVYMRPLGNVI 826 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~--~~~~l~~~l~e~GV~~~p~g~~l 826 (863)
++++++++++++.+ .+ +..+|.+..+++.|+|+++++.++. ....+... .+..+++.|+++||+++|.++.+
T Consensus 342 ~~~~~~~~~~~~~l----~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~i 416 (448)
T 3dod_A 342 EQVAEKSKKLHFLL----QD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVI 416 (448)
T ss_dssp HHHHHHHHHHHHHH----HH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEETTEE
T ss_pred HHHHHHHHHHHHHH----HH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccCCEE
Confidence 88888888877754 44 5678889999999999999997642 11222111 24678999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
|++||+++|+++|++++++|+++++++.
T Consensus 417 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 417 AFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=523.77 Aligned_cols=430 Identities=22% Similarity=0.296 Sum_probs=344.5
Q ss_pred Chhhhhcccccc---cCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHH
Q 002941 352 DMPKRAGELFWW---PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (863)
Q Consensus 352 ~~~~~~~~~l~~---p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q 428 (863)
++.+.+.+++|| ||++ ..|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~------~~p~~~~~--~~G~~v~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~A~~~~ 77 (452)
T 3n5m_A 11 ELLAKDEQYVWHGMRPFSP------NSTTVGAK--AEGCWVEDIQGK----RYLDGMSGLWCVNSGY-GRKELAEAAYKQ 77 (452)
T ss_dssp HHHHHHHHHBCCTTSCSCG------GGCCEEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-CCHHHHHHHHHH
T ss_pred HHHHHhhhhcccccccccc------CCCceEEE--eeeCEEEECCCC----EEEECCcchhhccCCC-CCHHHHHHHHHH
Confidence 456677788998 4432 34667777 788999999999 9999999999999999 899999999999
Q ss_pred HHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccE
Q 002941 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (863)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~ 508 (863)
++++.+ ....+.++...+|+++|++.+|.+ .+ |+|+|||+|||+.|+|++ +.|+..+|++ + +.+
T Consensus 78 ~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~-~~~~~~~g~~-~-----------~~~ 141 (452)
T 3n5m_A 78 LQTLSY-FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIA-RQYYAQKGEP-H-----------RYK 141 (452)
T ss_dssp HTTCCC-CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHH-HHHHHTTTCT-T-----------CCE
T ss_pred HHhcCC-cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHH-HHHHHhcCCC-C-----------CCE
Confidence 999877 444577899999999999998854 45 999999999999999999 4565555432 2 378
Q ss_pred EEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhh
Q 002941 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (863)
Q Consensus 509 II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 588 (863)
||+++++|||.+.+++++++...++..+ .+. ..++.+++.|.+++. +++
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~---------------~~~ 190 (452)
T 3n5m_A 142 FMSRYRGYHGNTMATMAATGQAQRRYQY--------EPF--------ASGFLHVTPPDCYRM---------------PGI 190 (452)
T ss_dssp EEEETTCCCCSSHHHHHSCCCGGGTTTT--------CCC--------CSCEEEECCCCTTTS---------------TTT
T ss_pred EEEECCCcCCCCHHHHhcCCchhhcccc--------CCC--------CCCCeEeCCCccccC---------------ccC
Confidence 9999999999999999998866544211 110 123455666654421 111
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccc
Q 002941 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (863)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR 668 (863)
...+ .+...+.+.|++.+++ .+++++++||+||++|| +|+++|+++|+++|+++|++||++||+||||+||||
T Consensus 191 ~~~~--~~~~~~~~~le~~l~~----~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 191 EREN--IYDVECVKEVDRVMTW----ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp TTSC--GGGCHHHHHHHHHHHH----HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred Cchh--hHHHHHHHHHHHHHHh----cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 1111 1222335677777752 24568999999996479 999999999999999999999999999999999999
Q ss_pred cCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 669 tG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
+|.+|+++++++.||++||||++++||+|+|++++++++++.+......+.+.|++||++||++|+|++++|+.++++++
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 343 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENL 343 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999986411123467899999999999999999999877777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEecC----
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRPLG---- 823 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p~g---- 823 (863)
.++++++++++++.| .+++.++|.+..+++.|+|+++++.++. ....+.......+++.|+++||+++|.+
T Consensus 344 ~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 419 (452)
T 3n5m_A 344 IERSAQMGSLLLEQL----KEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA 419 (452)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST
T ss_pred HHHHHHHHHHHHHHH----HHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC
Confidence 888888777777644 5566788999999999999999996542 1222223445678999999999999865
Q ss_pred ---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 824 ---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 824 ---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+.+||.||+++|+++|++++++|++++++
T Consensus 420 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 420 GYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp TCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999988753
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-57 Score=517.82 Aligned_cols=403 Identities=21% Similarity=0.230 Sum_probs=328.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+|+||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+..+..+.++...+|+++|++.
T Consensus 44 p~~~~~--g~G~~v~d~~g~----~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 116 (451)
T 3oks_A 44 PVYAVR--AGGGIVEDVDGN----RLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRL 116 (451)
T ss_dssp SSCEEE--EETTEEEETTSC----EEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHH
T ss_pred CceEEE--eecCEEEECCCC----EEEEcCCCccccccCC-CCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999999877655567889999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++|+|+|||+|||+.|+|+| +.| +|| .+||+++++|||++.+++++++.. .|+.
T Consensus 117 ~~~~~~~~v~~~~sGseA~~~Alk~a-~~~-------~g~-----------~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 177 (451)
T 3oks_A 117 TPVRGDKRSALFNSGSEAVENAVKIA-RSH-------THK-----------PAVVAFDHAYHGRTNLTMALTAKVMPYKD 177 (451)
T ss_dssp SSCCSSEEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCcCCCCEEEEeCcHHHHHHHHHHHH-HHh-------cCC-----------CeEEEEcCCcCCccHHHHHhcCCCccccc
Confidence 87433479999999999999999999 455 353 789999999999999999998853 4432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. ..++.++++|.+++... .+ .+.+.+.....+.+++.|++.
T Consensus 178 ~--------~~~~--------~~~~~~~~~~~~~~~~~--------------~g--~~~~~~~~~~~~~~~~~l~~~--- 222 (451)
T 3oks_A 178 G--------FGPF--------APEIYRAPLSYPFRDAE--------------FG--KELATDGELAAKRAITVIDKQ--- 222 (451)
T ss_dssp T--------CCSC--------CSSEEEECCCCHHHHGG--------------GC--TTTTTCHHHHHHHHHHHHHHH---
T ss_pred C--------CCCC--------CCCcEEeCCCccccccc--------------cc--cccchhhHHHHHHHHHHHHhh---
Confidence 1 1111 13566777776553100 00 000011122234445555431
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
..++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++|+.||++||||++++|
T Consensus 223 ~~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 301 (451)
T 3oks_A 223 IGADNLAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGG 301 (451)
T ss_dssp TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred cCCCCEEEEEEcCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCC
Confidence 23578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.++++++++++++.| .+.+.++
T Consensus 302 -~~iG~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 370 (451)
T 3oks_A 302 -LPLSAVTGRAEIMDSPHV------SGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRL----GRLQAED 370 (451)
T ss_dssp -SSCEEEEEEHHHHTCSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred -cceEEEEECHHHHhhhcC------CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998764 24889999999999999999999877777888888777777654 4556778
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+..+++.|+|+++++.+... ..+....+..+.+.|+++||++.|.+ +.+||.||+++|+++|++++++|+++++
T Consensus 371 ~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 371 DRIGDVRGRGAMIAMELVKAGT-TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp TTEEEEEEETTEEEEEEBSTTS-CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeeEEEEEEEecCcc-CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999975221 11233457789999999999999864 8999999999999999999999999875
Q ss_pred H
Q 002941 852 E 852 (863)
Q Consensus 852 ~ 852 (863)
+
T Consensus 450 ~ 450 (451)
T 3oks_A 450 G 450 (451)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=517.15 Aligned_cols=399 Identities=23% Similarity=0.252 Sum_probs=325.9
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+..+..+.++...+|+++|++.
T Consensus 47 p~~~~~--~~G~~v~d~~G~----~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 119 (453)
T 4ffc_A 47 PVYAVD--ADGGVIVDADGN----SFIDLGAGIAVTTVGA-SHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNAL 119 (453)
T ss_dssp SSCEEE--EETTEEEETTSC----EEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHH
T ss_pred CceEEe--eecCEEEeCCCC----EEEEcCCCcccCcCCC-CCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999999877655567889999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~~ 534 (863)
+|....++|+|+|||+|||+.|||+| +.| +|| .+||+++++|||++.+++++++.. .|+.
T Consensus 120 ~~~~~~~~v~~~~sGseA~~~alk~a-~~~-------~g~-----------~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 120 TPGDHDKRTALFNSGAEAVENAIKVA-RLA-------TGR-----------PAVVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp SSCSSCEEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCCCCCcEEEEeCcHHHHHHHHHHHH-HHh-------cCC-----------CEEEEEcCccCCcchHHHhhcCCCccccc
Confidence 87432479999999999999999999 455 343 789999999999999999998754 4432
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. +.+. ..++.++++|.+++. .++ .+..+....+.+.+++.+
T Consensus 181 ~--------~~~~--------~~~~~~~~~~~~~~~---------------~~g--~~~~~~~~~~~~~l~~~i------ 221 (453)
T 4ffc_A 181 Q--------FGPF--------APEVYRMPASYPLRD---------------EPG--LTGEEAARRAISRIETQI------ 221 (453)
T ss_dssp T--------SCSC--------CSSEEEECCCCTTTS---------------CTT--CCHHHHHHHHHHHHHHHT------
T ss_pred C--------CCCC--------CCCcEEeCCCccccC---------------ccc--cchHHHHHHHHHHHHHhc------
Confidence 1 1111 134566777754420 011 010011111223344333
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++|+.||++||||++++|
T Consensus 222 -~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G 299 (453)
T 4ffc_A 222 -GAQSLAAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGG 299 (453)
T ss_dssp -CGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCC
Confidence 3568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.. ..+++||++||++|+|++++|+.++++++.++++++++++++.+ .+.+.++
T Consensus 300 -~~~G~~~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~ 368 (453)
T 4ffc_A 300 -MPLSAVTGRAELMDAVYA------GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRL----SALAEEV 368 (453)
T ss_dssp -SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred -cCeEEEEECHHHHhhhcc------cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 899999999999998764 24789999999999999999999877777888888777777644 5556788
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|.+..+++.|+|+++++.+..+. ......+..+.+.|+++||++.|.+ +.+|+.||+++|+++|++++++|+++++
T Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 447 (453)
T 4ffc_A 369 DIIGEVRGRGAMLAIEIVKPGTL-EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIR 447 (453)
T ss_dssp SSEEEEEEETTEEEEEEBCTTSC-CBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeeceEEEEEEecCccc-CCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999752211 1233457789999999999999864 8999999999999999999999999987
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 448 ~~ 449 (453)
T 4ffc_A 448 AK 449 (453)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-53 Score=481.75 Aligned_cols=416 Identities=22% Similarity=0.255 Sum_probs=315.2
Q ss_pred ccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC
Q 002941 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (863)
Q Consensus 359 ~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~ 438 (863)
+++||||.. .+.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+....
T Consensus 2 ~~~~~~~~~-------~~~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~ 67 (430)
T 3i4j_A 2 SNVFYRSSK-------PYPVAVR--GEGVFLYDDAGR----RYLDGSSGALVANIGH-GRAEVGERMAAQAARLPFVHGS 67 (430)
T ss_dssp -CBCCSSSS-------CCCEEEE--EEBTEEEETTSC----EEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCTT
T ss_pred CccccCCCC-------CCceEEe--eecCEEEECCCC----EEEECCCchhccccCC-CCHHHHHHHHHHHHhccccccc
Confidence 478999822 3557776 788999999999 9999999999999999 7999999999999998766544
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|++.++.+ .++|+|+|||+||++.|+++++ .++..+|.+ + +.+||+++.+|||
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~~-~~~~~~g~~-~-----------~~~vi~~~~~yhg 133 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLAR-QYHVERGEP-G-----------RFKVITRVPSYHG 133 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHHH-HHHHHTTCT-T-----------CCEEEEETTC---
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHHH-HHHHhcCCC-C-----------CcEEEEEeCCcCC
Confidence 677889999999999998754 5799999999999999999994 566666642 3 2789999999999
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.+.+++++++...++..+ .+.. ++ .++.++++|+.++. ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~--------~~~~-~~-----~~~~~~~~~~~~~~--------------------------~~ 173 (430)
T 3i4j_A 134 ASLGSLAASGMGARRELY--------TPLM-RP-----EAWPKLPKPDPARN--------------------------GA 173 (430)
T ss_dssp -------------------------------CG-----GGSCEECCCCTTSC--------------------------HH
T ss_pred CCcccccccCcccccccc--------CCcC-CC-----CCceEcCCCcccch--------------------------hh
Confidence 999999888755443211 1110 00 03344555543310 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc-CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg-~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
...+.+++.+++ .+++++++|++||+ +| ++|+++++++|+++|+++|++||++||+||||+||||+|.++++++
T Consensus 174 ~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~ 248 (430)
T 3i4j_A 174 EDAEGLRALLER----EGPETVAAFMAEPV-VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248 (430)
T ss_dssp HHHTHHHHHHHH----HCGGGEEEEEECSS-CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHHHHHHh----cCCCCEEEEEEcCc-ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhh
Confidence 123556677753 23468999999998 89 9999999999999999999999999999999999999999999999
Q ss_pred c-CCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 678 L-GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 678 ~-gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
+ ++.||++||||++++||+|+|++++++++++.+.... +.+.+++||++||++|+|++++|+.++++++.++++++.
T Consensus 249 ~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 326 (430)
T 3i4j_A 249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS--GAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERG 326 (430)
T ss_dssp TTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTT--CBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccC--CcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9 9999999999999999999999999999999987532 235688999999999999999999987777778888877
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCc-hHHHHHHHHHHHHCCcEEEec--------CCEEE
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG-SLYAASLLKKLREDGVYMRPL--------GNVIY 827 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~-~~~~~~l~~~l~e~GV~~~p~--------g~~lr 827 (863)
+++++.+ .+...++|.+..+++.|+|+.+++.+......+. ...+.++.+.|+++||+++|. ++.+|
T Consensus 327 ~~~~~~l----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iR 402 (430)
T 3i4j_A 327 AQLLAGL----QALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLL 402 (430)
T ss_dssp HHHHHHH----HHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEE
T ss_pred HHHHHHH----HHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEE
Confidence 7777654 4556678889999999999999997432111111 122467899999999999986 58899
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
++|++++|++++++++++|+++++++
T Consensus 403 i~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 403 LGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998754
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=470.58 Aligned_cols=380 Identities=20% Similarity=0.298 Sum_probs=295.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|||+.+|+++.++|| +||+|++|+.+|++++.+.+ ..+.++...+|+++|+++
T Consensus 48 ~~~~~~--~~g~~~~d~~G~----~ylD~~~g~~~~~lgh-~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 119 (433)
T 1z7d_A 48 PVVLKR--AKGVFVYDVNDK----RYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLTICS-RAFFSVPLGICERYLTNL 119 (433)
T ss_dssp EEEEEE--EEBTEEEETTCC----EEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCSCCC-TTSEEHHHHHHHHHHHHH
T ss_pred CceEEe--eecCEEEECCCC----EEEEcccchhhcccCC-CCHHHHHHHHHHHHhCCCcc-CCcCCHHHHHHHHHHHhh
Confidence 556666 788999999999 9999999999999999 89999999999999876643 246778899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHH-hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~-~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++|+|+|||+|||+.|+|++ +.|+ ..+|..+|| .+||+++++|||++.+++++++.+.++.
T Consensus 120 ~g---~~~v~~~~sGseA~~~al~~a-~~~~~~~~g~~~gr-----------~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 184 (433)
T 1z7d_A 120 LG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKKIPENM-----------AKIVVCKNNFSGRTLGCISASTTKKCTS 184 (433)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSCCCTTC-----------CEEEEETTC-------------------
T ss_pred cC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCCCCCC-----------CeEEEEeCCcCCcchhhhcccCCccccc
Confidence 86 479999999999999999998 4443 233322232 7899999999999999888876443321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++++.. .++..+++ +| .+.+++.++
T Consensus 185 --------~~~p~~--------~~v~~~~~--------------------------~d--------~~~le~~l~----- 209 (433)
T 1z7d_A 185 --------NFGPFA--------PQFSKVPY--------------------------DD--------LEALEEELK----- 209 (433)
T ss_dssp -----------------------CEEEECT--------------------------TC--------HHHHHHHHT-----
T ss_pred --------cCCCCC--------CCeEEeCC--------------------------CC--------HHHHHHHhC-----
Confidence 111110 11222221 12 245666663
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++||+||+ ++++|+++++++++++|+++|++||++||+||||+||||+|.+++++++|+.||++||||++++|
T Consensus 210 --~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G 286 (433)
T 1z7d_A 210 --DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGG 286 (433)
T ss_dssp --STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred --CCCEEEEEEECC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCC
Confidence 246899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+... .+++||++||++|++++++|+.++++++.+++.++++++.+.| .++...+
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~l~~~~ 356 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPG------EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL----KRELKDS 356 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTT------CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHTTC
T ss_pred CCCeEEEEECHHHHhhhccc------cccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 88999999999999877542 4788999999999999999999876667777777776666644 4444567
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.+..+++.|+|+++++.... ..+..+++.|+++||++.|. ++.+|++||+.+|++++++++++|+++++++
T Consensus 357 ~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 357 KIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp TTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 888889999999999997431 01567889999999999986 5899999999999999999999999998765
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=507.05 Aligned_cols=418 Identities=17% Similarity=0.160 Sum_probs=326.1
Q ss_pred HHHHHHHHHHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeeccccccc
Q 002941 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG 412 (863)
Q Consensus 333 ~~l~~~L~~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~ 412 (863)
..+++.+.+++.++..+..++.+++.+++.............-|+++++ |+|+|+||+||| +|||+++++|+++
T Consensus 40 ~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~--~~G~~l~D~dG~----~yiD~~~~~~~~~ 113 (465)
T 2yky_A 40 AQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQ--GTGSRFQDVDGH----AYVNFLGEYTAGL 113 (465)
Confidence 4445556677777777777888888776642111111111112556665 889999999999 9999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccc
Q 002941 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~ 492 (863)
+|| +||+|++|+.+|+++... ..++++...+|+++|++++| + .++|+|+|||+|||+.|+|+| |.|
T Consensus 114 lGh-~~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r~~------- 179 (465)
T 2yky_A 114 FGH-SHPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-TAI------- 179 (465)
Confidence 999 899999999999998432 24678999999999999997 3 689999999999999999999 555
Q ss_pred ccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhh
Q 002941 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (863)
Q Consensus 493 tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (863)
+|| .+||+++++|||++.+++ ++ +... + + ++. .+.+|
T Consensus 180 tgr-----------~~ii~~~~~yHG~~~~~~--sg-~~~~---------g----~-~~~--------~~~~~------- 216 (465)
T 2yky_A 180 TGR-----------KTVLAFDGGYHGGLLNFA--SG-HAPT---------N----A-PYH--------VVLGV------- 216 (465)
Confidence 454 789999999999999888 33 1000 0 0 000 01111
Q ss_pred ccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH
Q 002941 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (863)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~ 652 (863)
| +| .+.+++.+++ .++++++||+||+ ++++|+++++++|+++|+++|++
T Consensus 217 --------------~---~d--------~~~l~~~l~~-----~~~~~aavi~epv-~~~~G~~~~~~~~l~~l~~l~~~ 265 (465)
T 2yky_A 217 --------------Y---ND--------VEGTADLLKR-----HGHDCAAILVEPM-LGAGGCVPAERAFLDLLRAEASR 265 (465)
Confidence 0 12 2345555542 2468999999998 99999999999999999999999
Q ss_pred cCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHH
Q 002941 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALG 732 (863)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla 732 (863)
||++||+||||+ | |+|.+|+++++|+.||++||||+++|| +|+|++++++++++.+... ....+.+++||++||++
T Consensus 266 ~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~-~~g~~~~~~T~~~npla 341 (465)
T 2yky_A 266 CGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPA-RDGAFAHAGTFNNNILT 341 (465)
Confidence 999999999999 6 999999999999999999999999999 8999999999999988641 01224588999999999
Q ss_pred HHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC-----CCCchHHHHH
Q 002941 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAAS 807 (863)
Q Consensus 733 ~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~ 807 (863)
|+|++++|++++++++++++.++++++++.| .+.+++++.+.++++.|+|+++++.++... ..........
T Consensus 342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~ 417 (465)
T 2yky_A 342 MSAGHAALTQIYTRQAASDLSASGDRFRANL----NRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKEL 417 (465)
Confidence 9999999999988888888888888888755 444566777788999999999999752100 0011223567
Q ss_pred HHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 808 LLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 808 l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
++..|+++||++.|.+... ||+++|++|||+++++|+++++++.+
T Consensus 418 ~~~~ll~~GV~v~p~~~~~---~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 418 FFFHMLRKGIYLAPRGMYA---LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 8999999999999876322 78899999999999999999987754
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-51 Score=468.35 Aligned_cols=378 Identities=20% Similarity=0.302 Sum_probs=304.5
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|||+.+|+|+.++|| +||+|++|+.+|++++.+.+ ..+.++...+|+++|+++
T Consensus 59 ~~~~~~--~~G~~~~d~~g~----~ylD~~sg~~~~~lgh-~~p~v~~Ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 130 (439)
T 2oat_A 59 PVALER--GKGIYLWDVEGR----KYFDFLSSYSAVNQGH-CHPKIVNALKSQVDKLTLTS-RAFYNNVLGEYEEYITKL 130 (439)
T ss_dssp SCEEEE--EEBTEEEETTCC----EEEESSGGGGTTTTCB-TCHHHHHHHHHHHTTCSCCC-TTSEESSHHHHHHHHHHH
T ss_pred CeeEEe--eecCEEEECCCC----EEEEccCCcccccCCC-CCHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 89999999999999876643 235678899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHH-hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~-~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
++ .++++|+|||+||++.|+|++ +.|+ ..+|..+| +.+||+++++|||++.+++++++.+.++.
T Consensus 131 ~g---~~~v~~~~sGseA~~~al~~~-~~~~~~~~g~~~g-----------~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 195 (439)
T 2oat_A 131 FN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGIQKY-----------KAKIVFAAGNFWGRTLSAISSSTDPTSYD 195 (439)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCCCTT-----------CCEEEEETTCCCCSSHHHHTTCCCHHHHT
T ss_pred cC---CCEEEEeCCHHHHHHHHHHHH-HHHhhhccCCCCC-----------CCeEEEEcCCCCCCCHhHhhcCCChhccc
Confidence 86 479999999999999999999 4443 22332223 26899999999999998888765332211
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++++.. .++..++++ | .+.+++.++
T Consensus 196 --------~~~p~~--------~~v~~~~~~--------------------------d--------~~~le~~l~----- 220 (439)
T 2oat_A 196 --------GFGPFM--------PGFDIIPYN--------------------------D--------LPALERALQ----- 220 (439)
T ss_dssp --------TSCSCC--------TTEEEECSS--------------------------C--------HHHHHHHTT-----
T ss_pred --------CCCCCC--------CCeEEeCCC--------------------------C--------HHHHHHHhC-----
Confidence 111110 112222221 2 245666653
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.+++++|++||+ ++++|+++++++++++|+++|++||++||+||||+||||+|.+++++++|+.||++|+||+++||
T Consensus 221 --~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G 297 (439)
T 2oat_A 221 --DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGG 297 (439)
T ss_dssp --STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred --CCCEEEEEEECC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCC
Confidence 246899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
|+|+|++++++++++.+... .+++||++||++|+++.++|+.++++++.+++.++++++.+.| .+. .+
T Consensus 298 ~~~~G~v~~~~~~~~~l~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~l--~~ 365 (439)
T 2oat_A 298 LYPVSAVLCDDDIMLTIKPG------EHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNEL----MKL--PS 365 (439)
T ss_dssp SSCCEEEEECHHHHTTSCTT------SSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----TTS--CT
T ss_pred CCCeEEEEECHHHHhccCCC------CcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHh--cC
Confidence 88999999999999887542 4788999999999999999999876667777777666666543 222 46
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+.+..+++.|+|+++++.+.. . . ....+.+.|+++||++.|. ++.+|+.||+.+|++++++++++|++++++
T Consensus 366 ~~~~~~~~~g~~~~v~l~~~~-~--~---~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 366 DVVTAVRGKGLLNAIVIKETK-D--W---DAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp TTEEEEEEETTEEEEEECCCS-S--C---CHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEeeeeEEEEEEecCc-c--H---HHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 777789999999999997531 0 0 1457889999999999986 489999999999999999999999988754
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=459.15 Aligned_cols=389 Identities=16% Similarity=0.223 Sum_probs=307.1
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++... ..++++...+|+++|++
T Consensus 37 ~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~ 106 (434)
T 3l44_A 37 APIAMER--GKGAYFWDVDGN----KYIDYLAAYGPIITGH-AHPHITKAITTAAENGVL---YGTPTALEVKFAKMLKE 106 (434)
T ss_dssp CCCCEEE--EEBTEEEETTCC----EEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eecCEEEECCCC----EEEECCCchhccccCC-CCHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHHH
Confidence 4567776 788999999999 9999999999999999 899999999999998532 24678999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.++ + .++++|+|||+||++.|+|++ +.+ +++ .+||+++++|||.+.+++++++...+..
T Consensus 107 ~~~-~-~~~v~~~~sGsea~~~ai~~a-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 165 (434)
T 3l44_A 107 AMP-A-LDKVRFVNSGTEAVMTTIRVA-RAY-------TGR-----------TKIMKFAGCYHGHSDLVLVAAGSGPSTL 165 (434)
T ss_dssp HCT-T-CSEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSSGGGGBC-------C
T ss_pred hCC-C-CCEEEEeCchHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCccCCCcHHHHhhcCCccccc
Confidence 987 3 689999999999999999999 445 233 7899999999999999998876432211
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .+... ..+... ...+..+++ +| .+.+++.+++
T Consensus 166 ~--~~~~~------~~~~~~-~~~~~~~~~--------------------------~d--------~~~le~~l~~---- 198 (434)
T 3l44_A 166 G--TPDSA------GVPQSI-AQEVITVPF--------------------------NN--------VETLKEALDK---- 198 (434)
T ss_dssp C--CBSST------TCCHHH-HTTEEEECT--------------------------TC--------HHHHHHHHHH----
T ss_pred C--CCCcC------CCCCcC-CCceEecCc--------------------------cc--------HHHHHHHHHh----
Confidence 0 00000 000000 001111110 12 2456666653
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++||||++++|
T Consensus 199 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G 275 (434)
T 3l44_A 199 -WGHEVAAILVEPI-VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGG 275 (434)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTT
T ss_pred -CCCCEEEEEEcCC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCC
Confidence 2467999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..+.+++||++||++|++++++|+.++++++.+++.++++++++.| .+....+
T Consensus 276 -~~iG~~~~~~~i~~~~~~~---~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 347 (434)
T 3l44_A 276 -LPIGAYGGKKEIMEQVAPL---GPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGI----LEQAAKH 347 (434)
T ss_dssp -SSCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -cCeeeEEEcHHHHHhhccC---CCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 8999999999999988642 2246889999999999999999999987778888888887777755 4455667
Q ss_pred CCeeEecccceEEEEEEccCCcCC-----CCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNA-----GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~-----~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.+..+++.|+|+.+++.+..... .........+.+.|+++||++++.+ +.+|+ ++++|++++++++++|++
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl--~~~~t~e~i~~~l~~l~~ 425 (434)
T 3l44_A 348 NIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFL--TTEHTKEDIEYTIEAVGR 425 (434)
T ss_dssp TCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEEC--CTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEE--ecccCHHHHHHHHHHHHH
Confidence 777889999999999996432110 0122345678899999999999876 56665 678999999999999999
Q ss_pred HHHHHH
Q 002941 849 RLEEFD 854 (863)
Q Consensus 849 ~l~~l~ 854 (863)
+++++.
T Consensus 426 ~l~~~~ 431 (434)
T 3l44_A 426 AFAALA 431 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=469.56 Aligned_cols=434 Identities=19% Similarity=0.262 Sum_probs=334.4
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
..+.+.+++||||+++..+. ..+.++++ |+|+++||.+|+ +|+|+.+++|++++|| +||+|++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~ 82 (449)
T 3a8u_X 11 ASQLKLDAHWMPYTANRNFL-RDPRLIVA--AEGSWLVDDKGR----KVYDSLSGLWTCGAGH-TRKEIQEAVAKQLSTL 82 (449)
T ss_dssp GGGSCGGGSCCTTSCHHHHH-HSCCCEEE--EEBTEEEETTCC----EEEETTHHHHTCTTCB-SCHHHHHHHHHHTTTC
T ss_pred HHhhhhcccccccccccccc-CCCceEEe--eecCEEEECCCC----EEEECCccHhhccCCC-CCHHHHHHHHHHHHhC
Confidence 34567789999999864322 13566766 788999999999 9999999999999999 6999999999999886
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+..+..+.++...+|+++|++++|.+ .++|+|++||+||++.|++++ +.|+..+|++ + +.+||++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~-~~~~~~~g~~-~-----------~~~vi~~ 148 (449)
T 3a8u_X 83 DYSPGFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMV-RAYWRLKGQA-T-----------KTKMIGR 148 (449)
T ss_dssp SCCCSSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTCT-T-----------CCEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHHHhcCCC-C-----------CCEEEEE
Confidence 522222567888999999999998744 579999999999999999998 4566655542 2 2689999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+.+|||.+.+++++++.+.++. ++++. ..++..++.|..+.+. +. ..|
T Consensus 149 ~~~yhg~~~~~~~~~g~~~~~~--------~~~~~--------~~~~~~v~~~~~~~~~---------------~~-~~d 196 (449)
T 3a8u_X 149 ARGYHGVNIAGTSLGGVNGNRK--------LFGQP--------MQDVDHLPHTLLASNA---------------YS-RGM 196 (449)
T ss_dssp TTCCCCSSHHHHHHCCCHHHHT--------TTCCC--------SCSEEEECCCCCGGGT---------------TC-SSS
T ss_pred CCCcCCCChhhhhccCChhhcc--------ccCCC--------CCCCeEecCCccccCc---------------cc-cCC
Confidence 9999999998888876433221 11111 0234556666433210 00 001
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.+++...+.+.+++.+++ .+++++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+
T Consensus 197 ~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 197 PKEGGIALADELLKLIEL----HDASNIAAVFVEPL-AGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 011222335667777753 12357899999998 8999999999999999999999999999999999999999998
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCc---cceeecccCCCccHHHHHHHHHHHHHhcChhhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~---~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~ 749 (863)
++++++++.||++|+||++++||+|+|++++++++++.+..... ...+.+++||++||++|+++.++|+.++++++.
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~ 351 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLV 351 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999998999999999999998875310 122357789999999999999999998766677
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEe
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLM 829 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ 829 (863)
++++++.+++++.| .+ +.+++.+..+++.|+++.+++....... ......+.+.|+++||++++.++.+|++
T Consensus 352 ~~~~~~~~~l~~~L----~~-l~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g~~iRis 423 (449)
T 3a8u_X 352 QSVAEVAPHFEKAL----HG-IKGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGGDTLQFG 423 (449)
T ss_dssp HHHHHHHHHHHHHH----HT-TTTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEETTEEEEC
T ss_pred HHHHHHHHHHHHHH----HH-HhcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCCCEEEEE
Confidence 77777766666544 33 3457778888999999999997532000 0012358888999999999988999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
||+.+|++++++++++|+++++++
T Consensus 424 ~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 424 PTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=453.29 Aligned_cols=387 Identities=19% Similarity=0.254 Sum_probs=305.9
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++..+ ..++++...+|+++|++
T Consensus 35 ~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~---~~~~~~~~~~l~~~la~ 104 (429)
T 3k28_A 35 NPLFMER--GKGSKVYDIDGN----EYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTS---FGAPTEIENKLAKLVIE 104 (429)
T ss_dssp CCCCEEE--EEBTEEEETTCC----EEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eecCEEEECCCC----EEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcC---cCCCCHHHHHHHHHHHH
Confidence 4567776 788999999999 9999999999999999 899999999999998654 24678999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+++. .++++|+|||+|||+.|+|++ +.+ +|+ .+||.++++|||.+.+++..++......
T Consensus 105 ~~~~--~~~v~~~~~Gsea~~~ai~~a-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 163 (429)
T 3k28_A 105 RVPS--IEIVRMVNSGTEATMSALRLA-RGY-------TGR-----------NKILKFIGCYHGHGDSLLIKAGSGVATL 163 (429)
T ss_dssp HSTT--CSEEEEESSHHHHHHHHHHHH-HHH-------HTC-----------CEEEEEETCCCCSCGGGCSSCCTTC---
T ss_pred hCCC--CCEEEEeCChHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCCcHHHHHhcCCccccc
Confidence 9873 689999999999999999999 445 243 6899999999999999988776432210
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .+... . .+... ...+..++ .+| .+.+++.+++
T Consensus 164 ~--~~~~~----~--~~~~~-~~~~~~~~--------------------------~~d--------~~~le~~l~~---- 196 (429)
T 3k28_A 164 G--LPDSP----G--VPEGV-AKNTITVA--------------------------YND--------LESVKYAFEQ---- 196 (429)
T ss_dssp ----CCCT----T--CCHHH-HTTEEEEE--------------------------TTC--------HHHHHHHHHH----
T ss_pred C--CCCcC----C--CCCcc-cCceeecC--------------------------CCC--------HHHHHHHHHh----
Confidence 0 00000 0 00000 00000000 012 2456666653
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++||||++++|
T Consensus 197 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G 273 (429)
T 3k28_A 197 -FGDDIACVIVEPV-AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGG 273 (429)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCC
Confidence 3467999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..+.+++||++||++|++++++|+.++ +++.++++++.+++++.| .+....+
T Consensus 274 -~~iG~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L----~~~~~~~ 344 (429)
T 3k28_A 274 -LPVGAYGGKAEIMRQVAPS---GPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGL----RKAAEKH 344 (429)
T ss_dssp -SCCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -CCeEEEEEcHHHHhhhccC---CCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHhhC
Confidence 8999999999999988642 224588999999999999999999886 667777777777776644 4556677
Q ss_pred CCeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+.+..+++.|+++++++.++... ..........+++.|+++||+++|.+ +.+|+ ++.+|++++++++++|++
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~--~~~~t~e~i~~~l~~l~~ 422 (429)
T 3k28_A 345 GIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFL--STVHSDADIEATIAAAEI 422 (429)
T ss_dssp TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCC--CTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEE--ECCCCHHHHHHHHHHHHH
Confidence 88889999999999998753210 01123345788999999999999865 55665 689999999999999999
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
+++++
T Consensus 423 ~l~~~ 427 (429)
T 3k28_A 423 AMSKL 427 (429)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 88654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-49 Score=448.90 Aligned_cols=387 Identities=18% Similarity=0.233 Sum_probs=295.7
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|+++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|+++..+. +++++...+|+++|++
T Consensus 35 ~p~~~~~--~~G~~~~d~~g~----~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~---~~~~~~~~~la~~l~~ 104 (429)
T 4e77_A 35 IPLFIER--ADGAYLFDVDGK----AYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLSF---GAPTEMEVKMAQLVTD 104 (429)
T ss_dssp CCCCEEE--EEBTEEEETTCC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eecCEEEECCCC----EEEECCCchhccccCC-CCHHHHHHHHHHHHhCccc---CCCCHHHHHHHHHHHh
Confidence 3567776 788999999999 9999999999999999 8999999999999986542 4678999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.++. .++++|+|||+|||+.|+|+| +.+ ++| .+||+++++|||.+.+++..++......
T Consensus 105 ~~~~--~~~v~~~~sGsea~~~al~~a-~~~-------~~~-----------~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 163 (429)
T 4e77_A 105 LVPT--MDMVRMVNSGTEATMSAIRLA-RGY-------TGR-----------DKIIKFEGCYHGHADCLLVKAGSGALTL 163 (429)
T ss_dssp HSTT--CSEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCC----------------
T ss_pred hCCC--CCEEEEeCcHHHHHHHHHHHH-HHh-------hCC-----------CEEEEEcCccCCCChhhhhhcCCccccc
Confidence 9873 689999999999999999999 555 243 7899999999999998776654322110
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .+...+ .+.... ..+..++ .+| .+.+++.+++
T Consensus 164 ~--~~~~~~------~~~~~~-~~~~~~~--------------------------~~d--------~~~le~~l~~---- 196 (429)
T 4e77_A 164 G--QPNSPG------VPTDFA-KHTLTCT--------------------------YND--------LASVRQAFEQ---- 196 (429)
T ss_dssp ----CCCTT------SCGGGG-TTEEEEC--------------------------TTC--------HHHHHHHHHH----
T ss_pred C--CCCcCC------CCCccC-CceeecC--------------------------CCC--------HHHHHHHHHh----
Confidence 0 000000 000000 0000000 012 2456677753
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++||||++++|
T Consensus 197 -~~~~~~~vi~ep~-~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G 273 (429)
T 4e77_A 197 -YPQEVACIIVEPV-AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGG 273 (429)
T ss_dssp -STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTT
T ss_pred -cCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCC
Confidence 3467999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.... ...+++||++||++|++++++|+.++++++.++++++.+++++.| .+.+..+
T Consensus 274 -~~~G~~~~~~~~~~~l~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 345 (429)
T 4e77_A 274 -MPVGAFGGRREVMNALAPTG---PVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGL----RHAAKEE 345 (429)
T ss_dssp -SCCEEEEECHHHHTTBTTTS---SBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -CCeEEEEECHHHHHHhccCC---CccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 79999999999999886422 245889999999999999999999987778888888777777755 4455667
Q ss_pred CCeeEecccceEEEEEEccCCcCCCC------chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGY------GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~------~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.+..+++.|+|+++++.+......+ .......+.+.|+++||++++.+ ..++ +++.+|++++++++++|+
T Consensus 346 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~ 423 (429)
T 4e77_A 346 NIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGF--MSLAHSNEDIQKTVNAAR 423 (429)
T ss_dssp TCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCEE--CCTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCEE--EeccCCHHHHHHHHHHHH
Confidence 77888999999999999764211111 12345788999999999999876 4444 478999999999999999
Q ss_pred HHHHH
Q 002941 848 QRLEE 852 (863)
Q Consensus 848 ~~l~~ 852 (863)
+++++
T Consensus 424 ~~l~~ 428 (429)
T 4e77_A 424 RCFAK 428 (429)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88753
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-50 Score=465.53 Aligned_cols=395 Identities=17% Similarity=0.140 Sum_probs=292.0
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc--ccccCCC--CCChHHHHHHHHHHhhcCC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF--GHVMFPE--NVYEPALECAELLLQGVGK 458 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~--~~~~~~~--~~~~~~~eLae~L~~~~p~ 458 (863)
+|+|+|+||.||+ +|||+++|+|++++|| +||+|++|+.+|+.+. .+....+ ...+.+.+|+++|+++.|.
T Consensus 51 ~~~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~ 125 (472)
T 1ohv_A 51 ESRGNYLVDVDGN----RMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPK 125 (472)
T ss_dssp GCBBTEEEBTTSC----EEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCT
T ss_pred EEEcCEEEeCCCC----EEEECCCCHhhcccCC-CCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCC
Confidence 4889999999999 9999999999999999 8999999999997653 2321111 1345677777778887765
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhh--ccc---------------cccccCCCccccccccEEEEecCCCccCcc
Q 002941 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEV---------------LVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (863)
Q Consensus 459 ~~~~~v~f~~SGSeAvE~ALklA~r~~~~~--~G~---------------~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ 521 (863)
+ .++|+|+|||+|||+.|||+| +.|++. +|. .+|| .|.+||+++++|||++.
T Consensus 126 ~-~~~v~f~~sGseA~~~Aik~a-~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~---------~r~~ii~~~~~yHg~~~ 194 (472)
T 1ohv_A 126 G-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMINQAPGC---------PDYSILSFMGAFHGRTM 194 (472)
T ss_dssp T-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTTCTTTS---------CCCEEEEETTCCCCSSH
T ss_pred C-cCEEEEeCCchhHHHHHHHHH-HHHhhhhccCcccccccccccccccccccC---------CCCeEEEECCCcccccH
Confidence 4 689999999999999999999 456431 221 0121 03789999999999999
Q ss_pred ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHH
Q 002941 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (863)
Q Consensus 522 gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 601 (863)
+++++++...++.. + . |. .++.++++|. ++ ++.. ..+. .++ .......
T Consensus 195 ~~~~~~g~~~~~~~-------~----~--~~----~~~~~~~~p~-~~----------~~~~-~~~~-~~~--~~~~~d~ 242 (472)
T 1ohv_A 195 GCLATTHSKAIHKI-------D----I--PS----FDWPIAPFPR-LK----------YPLE-EFVK-ENQ--QEEARCL 242 (472)
T ss_dssp HHHHHCCSCHHHHT-------T----S--CC----CCCCEECCCC-CC----------SSGG-GCHH-HHH--HHHHHHH
T ss_pred HHHhcCCCcccccc-------C----C--CC----CCCcccCCCc-cc----------Cccc-cccc-cch--hHHHHHH
Confidence 99999875432110 0 0 00 0111233331 00 0000 0000 000 1111234
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
+.|++.|... .....++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+|+++++|+.
T Consensus 243 ~~l~~~l~~~--~~~~~~~~~vive~v-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~ 319 (472)
T 1ohv_A 243 EEVEDLIVKY--RKKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHHH--HHTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS
T ss_pred HHHHHHHHhc--CCCCCCEEEEEEcCC-cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC
Confidence 6677777530 000127999999998 9999999999999999999999999999999999999999999999999987
Q ss_pred --CcEEEeccc-cCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 682 --PDIACYGKL-LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 682 --PDivt~sKg-LggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
||++||||+ ||||| + + ++++. .+ ..+.+++||++||++|++++++|++++++++.+++.+++++
T Consensus 320 ~~~Di~t~sK~~l~GG~-~----~-~~~~~-~~------~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 386 (472)
T 1ohv_A 320 DPADVMTFSKKMMTGGF-F----H-KEEFR-PN------APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKV 386 (472)
T ss_dssp SCCSEEEECGGGSSEEE-E----E-CGGGS-CS------SSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCEEEEccccccCCc-c----C-chhhc-cc------ccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999 88884 2 2 55542 11 12457899999999999999999998766677777777777
Q ss_pred HHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcH
Q 002941 759 LRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSP 836 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~ 836 (863)
+.+.| .++..++| .+..+++.|+|+++++.+. .....++..|+++||++.|.+ +.+|++||+.+|+
T Consensus 387 l~~~L----~~l~~~~~~~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~ 454 (472)
T 1ohv_A 387 LLTGL----LDLQARYPQFISRVRGRGTFCSFDTPDE--------SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRD 454 (472)
T ss_dssp HHHHH----HHHHHHCTTTCEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCH
T ss_pred HHHHH----HHHHhhCCCcEEeecCCceEEEEEeCCh--------hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCH
Confidence 76654 44445667 4888999999999987532 135678999999999999975 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
++|++++++|+++++++
T Consensus 455 e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 455 HHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987653
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=447.22 Aligned_cols=396 Identities=21% Similarity=0.251 Sum_probs=316.6
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|+|+++++|++++|| +||+|++|+.+|++++.+..+..+.++...+|+++|+++
T Consensus 26 ~~~~~~--~~G~~v~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 98 (439)
T 3dxv_A 26 PLAISG--GRGARLIEENGR----ELIDLSGAWGAASLGY-GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLAS 98 (439)
T ss_dssp CCEEEE--EEBTEEEETTSC----EEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHT
T ss_pred CceEEE--eeeCEEEeCCCC----EEEECCCchhhccCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 457776 788999999999 9999999999999999 899999999999999876654567789999999999999
Q ss_pred cCCCCC-CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC--C
Q 002941 456 VGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP--Y 532 (863)
Q Consensus 456 ~p~~~~-~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~--~ 532 (863)
++.+ . ++++|++||+||++.|++++ +.+ +++ .+||+++++|||.+.+++++++... |
T Consensus 99 ~~~~-~~~~v~~~~ggsea~~~al~~~-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 158 (439)
T 3dxv_A 99 FPGE-GTHKIWFGHSGSDANEAAYRAI-VKA-------TGR-----------SGVIAFAGAYHGCTVGSMAFSGHSVQAD 158 (439)
T ss_dssp TTCT-TTEEEEEESSHHHHHHHHHHHH-HHH-------HSC-----------CEEEEETTCCCCSSHHHHCC--------
T ss_pred CCCC-CCCEEEEeCCHHHHHHHHHHHH-HHH-------hCC-----------CEEEEECCCCCCCcHHHHhhcCCCchhh
Confidence 8754 5 69999999999999999998 444 232 6899999999999999999887544 4
Q ss_pred CCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 002941 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (863)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i 612 (863)
+..+ .+. ..++..+++|+++. + .. . ....+.+++.+++
T Consensus 159 ~~~~--------~~~--------~~~~~~~~~~~~~~------------------~--~~-~---~~d~~~le~~l~~-- 196 (439)
T 3dxv_A 159 AAKA--------DGL--------ILLPYPDPYRPYRN------------------D--PT-G---DAILTLLTEKLAA-- 196 (439)
T ss_dssp -------------CE--------EEECCCCSSSCBTT------------------B--TT-S---HHHHHHHHHHHHT--
T ss_pred cccc--------CCC--------CCCcEEcCCCcccc------------------c--cc-H---HHHHHHHHHHHHh--
Confidence 3211 000 01222334432210 0 00 0 0124667777742
Q ss_pred CCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC
Q 002941 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (863)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg 692 (863)
.+++++++|++||+ ++++|.+.++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||+++
T Consensus 197 --~~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~ 273 (439)
T 3dxv_A 197 --VPAGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLG 273 (439)
T ss_dssp --SCTTCEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGG
T ss_pred --cCCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhc
Confidence 24568999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+| +|+|++++++++++.+... .+++|| +||+++++++++|+.++++++.++++++.+++++.+ .+...
T Consensus 274 ~G-~riG~~~~~~~~~~~~~~~------~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l----~~~~~ 341 (439)
T 3dxv_A 274 GG-LPLSAVIAPAEILDCASAF------AMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGL----SELAK 341 (439)
T ss_dssp TT-SCCEEEEEEHHHHTSCSSS------SCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHH
T ss_pred CC-cceEEEEECHHHHhhhcCC------CcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHH
Confidence 99 5999999999999887642 478899 999999999999998877777778877777777644 45556
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.++.+..+++.|+|+++++.++.............+.+.|+++||++++.+ +.+|++|++.+|++++++++++|+++
T Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 421 (439)
T 3dxv_A 342 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRA 421 (439)
T ss_dssp HCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 788889999999999999964321111123356788999999999999876 89999999999999999999999999
Q ss_pred HHHHHH
Q 002941 850 LEEFDK 855 (863)
Q Consensus 850 l~~l~~ 855 (863)
++++.+
T Consensus 422 l~~~~~ 427 (439)
T 3dxv_A 422 FSELSA 427 (439)
T ss_dssp HHTGGG
T ss_pred HHHHhc
Confidence 987754
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=439.27 Aligned_cols=374 Identities=22% Similarity=0.302 Sum_probs=309.1
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.++++++.+.. ..+.++...+|+++|++.
T Consensus 19 ~~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 90 (395)
T 3nx3_A 19 DIVLEK--GQGVYLFDDKAK----KYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAKA 90 (395)
T ss_dssp SCBEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHHH
T ss_pred CceEEe--eeeeEEEECCCC----EEEECCCcHHhccCCC-CCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHHh
Confidence 446666 788999999999 9999999999999999 89999999999999887654 346789999999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||+||++.|++++ +.++..+| ++ +.+||+++++|||.+..++++++.+.++..
T Consensus 91 ~~---~~~v~~~~gg~ea~~~al~~~-~~~~~~~g--~~-----------~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 153 (395)
T 3nx3_A 91 SA---LERVFFTNSGTESIEGAMKTA-RKYAFNKG--VK-----------GGQFIAFKHSFHGRTLGALSLTANEKYQKP 153 (395)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTT--CT-----------TCEEEEETTCCCCSSHHHHTTCCCHHHHGG
T ss_pred cC---CCeEEEeCCHHHHHHHHHHHH-HHHhhccC--CC-----------CCEEEEEcCCcCCCCHHHHhhcCCcccccc
Confidence 87 479999999999999999999 45554444 23 278999999999999999988764433211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+. . .++.+++++ | .+.+++.+
T Consensus 154 ~--------~~~----~----~~~~~~~~~--------------------------d--------~~~l~~~l------- 176 (395)
T 3nx3_A 154 F--------KPL----I----SGVKFAKYN--------------------------D--------ISSVEKLV------- 176 (395)
T ss_dssp G--------CSC----C----SCEEEECTT--------------------------C--------HHHHHTTC-------
T ss_pred c--------CCC----C----CCcEEeCCC--------------------------C--------HHHHHHhc-------
Confidence 0 000 0 111222211 1 23344333
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||++++|
T Consensus 177 -~~~~~~v~~~~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G- 253 (395)
T 3nx3_A 177 -NEKTCAIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCG- 253 (395)
T ss_dssp -CTTEEEEEEESE-ECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTT-
T ss_pred -cCCeEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCC-
Confidence 256899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHH-HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLATNAV-FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~~~~i-~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++ ++.+.. ..+++||++||+++++++++|+.++++++.++++++.+++++.+ .+...++
T Consensus 254 ~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~ 323 (395)
T 3nx3_A 254 LSVGAFVINQKVASNSLEA------GDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSL----DELINEF 323 (395)
T ss_dssp SCCEEEEECHHHHHHHSCT------TCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred CceEEEEEchhhhhhhcCC------cccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 799999999999 887754 24788999999999999999998876777788887777777654 4455677
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
|.+..+++.|+++.+++.+.. .+..+.+.|+++||++++.+ +.+|++|++.+|++++++++++|++++++
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 324 DFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 888899999999999997532 25678899999999999874 89999999999999999999999988753
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=443.03 Aligned_cols=394 Identities=21% Similarity=0.276 Sum_probs=304.6
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.++..+++|.+|.. .|.++++ |+|+++||.||+ +|||+.+++|++++|| +||+|++|+.+|++++
T Consensus 24 ~~~~~~~~~~~~~~~-------~~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~ 89 (420)
T 2pb2_A 24 TRATFDEVILPVYAP-------ADFIPVK--GKGSRVWDQQGK----EYIDFAGGIAVTALGH-CHPALVEALKSQGETL 89 (420)
T ss_dssp ----------------------CCSCEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccccC-------CCceEEe--eecCEEEECCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhc
Confidence 444555667765543 2445665 788999999999 9999999999999999 8999999999999987
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.. ..+.++...+|+++|+++++ .++++|++||+||++.|+|++ +.|+..+|.+ |+ .+||++
T Consensus 90 ~~~~-~~~~~~~~~~l~~~la~~~g---~~~v~~~~ggteA~~~al~~~-~~~~~~~~~~-g~-----------~~vi~~ 152 (420)
T 2pb2_A 90 WHTS-NVFTNEPALRLGRKLIDATF---AERVLFMNSGTEANETAFKLA-RHYACVRHSP-FK-----------TKIIAF 152 (420)
T ss_dssp CCCC-TTSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTCT-TC-----------CEEEEE
T ss_pred cccc-CccCCHHHHHHHHHHHhhCC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCC-CC-----------CEEEEE
Confidence 7643 24678899999999999987 479999999999999999998 4565554432 32 689999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
+++|||.+..++++++...++. ++.+.. .++..++++ |
T Consensus 153 ~~~yh~~~~~~~~~~g~~~~~~--------~~~p~~--------~~~~~~~~~--------------------------d 190 (420)
T 2pb2_A 153 HNAFHGRSLFTVSVGGQPKYSD--------GFGPKP--------ADIIHVPFN--------------------------D 190 (420)
T ss_dssp TTCCCCSSHHHHHHSSCHHHHT--------TSSSCC--------SCEEEECTT--------------------------C
T ss_pred eCCcCCcCHHHHHhcCCccccc--------cCCCCC--------CCeEEecCC--------------------------C
Confidence 9999999998888766432211 111110 112222211 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.+.+++.+. +++++|++||+ ++.+|+++++++++++|+++|++||++||+||||+||||+|++
T Consensus 191 --------~~~le~~i~--------~~~~~vi~~p~-~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 191 --------LHAVKAVMD--------DHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp --------HHHHHHHCC--------TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred --------HHHHHHHhc--------cCceEEEEeCC-cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 244555552 36899999998 9999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
++++.+++.||++||||++++| +|+|++++++++++.+.. ..++.||++||++|++++++|+.++++++.+++
T Consensus 254 ~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~ 326 (420)
T 2pb2_A 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHV------GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGI 326 (420)
T ss_dssp SHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC----------CCEECCCHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcC------CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999 799999999998887653 247789999999999999999999877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCG 831 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~pp 831 (863)
.++.+++.+.| .+....+|.+..+++.|+|+.+++.... . ....++.+.|+++||++.+.+ +.+|++||
T Consensus 327 ~~~~~~l~~~L----~~~~~~~~~~~~~~~~g~~~~v~~~~~~-~-----~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~ 396 (420)
T 2pb2_A 327 HTKRQQFVQHL----QAIDEQFDIFSDIRGMGLLIGAELKPKY-K-----GRARDFLYAGAEAGVMVLNAGADVMRFAPS 396 (420)
T ss_dssp HHHHHHHHHHH----HHHHHHHCCEEEEEEETTEEEEEECGGG-T-----TCHHHHHHHHHHTTEECEESSTTEEEECCC
T ss_pred HHHHHHHHHHH----HHHHhcCCCeEEEEecceEEEEEECCCc-h-----HHHHHHHHHHHHCCCEEEeCCCCEEEEECC
Confidence 77777776654 3333345778889999999999986431 0 014678899999999999974 89999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l~~l 853 (863)
+.++++++++++++|+++++++
T Consensus 397 ~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 397 LVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=442.78 Aligned_cols=388 Identities=16% Similarity=0.213 Sum_probs=307.8
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++++ |+|+++||.||+ +|||+++++|++++|| +||+|++|+.+|++++.+. .+.++...+|+++|++
T Consensus 34 ~p~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~ 103 (427)
T 3fq8_A 34 QPIVFDR--VKDAYAWDVDGN----RYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTSF---GAPCALENVLAEMVND 103 (427)
T ss_dssp CCCCEEE--EEBTEEEETTSC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHH
T ss_pred CCceEEE--eeeCEEEECCCC----EEEECCCchhhhccCC-CCHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHHH
Confidence 3567776 788999999999 9999999999999999 8999999999999987553 3478999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
..+ + .++++|+|||+||++.|+|+| +.+ +|+ .+||+++++|||.+.+++.+++......
T Consensus 104 ~~~-~-~~~v~~~~ggsea~~~al~~a-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 162 (427)
T 3fq8_A 104 AVP-S-IEMVRFVNSGTEACMAVLRIM-RAY-------TGR-----------DKIIKFEGCYHGHADMFLVKAGSGVATL 162 (427)
T ss_dssp HST-T-CSEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEEETCCCCSCGGGCSSCCTHHHHH
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCCCHHHHHhcCCccccc
Confidence 987 3 589999999999999999999 555 243 6899999999999998887765321100
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. .++..+ .+.... ..+.. +| .+| .+.+++.+++
T Consensus 163 ~--~~~~~~------~~~~~~-~~~~~--~~------------------------~~d--------~~~le~~l~~---- 195 (427)
T 3fq8_A 163 G--LPSSPG------VPKKTT-ANTLT--TP------------------------YND--------LEAVKALFAE---- 195 (427)
T ss_dssp T--CCSCSS------SCHHHH-TTEEE--EE------------------------TTC--------HHHHHHHHHH----
T ss_pred C--CCCCCC------CCCccc-Cceee--cC------------------------CCC--------HHHHHHHHHh----
Confidence 0 000000 000000 00000 00 012 2456677753
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++|
T Consensus 196 -~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G 272 (427)
T 3fq8_A 196 -NPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG 272 (427)
T ss_dssp -STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCC
Confidence 3568999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+... ..+.+++||++||++|++++++|+.++++++.++++++.+++++.+ .+....+
T Consensus 273 -~~~G~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~ 344 (427)
T 3fq8_A 273 -LPVGAYGGKREIMQLVAPA---GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGL----LAIAQET 344 (427)
T ss_dssp -SSCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -cceEEEEEcHHHHHhhccC---CCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999999999988642 2346889999999999999999999987778888888887777755 4445556
Q ss_pred CCeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+..+++.|+++++++...... ..........+++.|+++||++++.+. .++.+++.+|++++++++++|+++
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~r~~~~~~~t~e~i~~~l~~l~~~ 423 (427)
T 3fq8_A 345 GHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTV 423 (427)
T ss_dssp TCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC-CCEEeeCcCCHHHHHHHHHHHHHH
Confidence 66678899999999998753211 011223456789999999999998763 245678999999999999999998
Q ss_pred HHH
Q 002941 850 LEE 852 (863)
Q Consensus 850 l~~ 852 (863)
+++
T Consensus 424 l~~ 426 (427)
T 3fq8_A 424 MSA 426 (427)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=445.95 Aligned_cols=397 Identities=16% Similarity=0.144 Sum_probs=306.4
Q ss_pred cccceEEEE-cCCCcccceEEeeecccccccCCCCCcHHHH-H-HHHH---HHHhcccccCCCCCChHHHHHHHHHHhhc
Q 002941 383 CGENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELA-R-DMGY---TAARFGHVMFPENVYEPALECAELLLQGV 456 (863)
Q Consensus 383 ~G~G~~v~D-~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~-~-Ai~~---q~~~~~~~~~~~~~~~~~~eLae~L~~~~ 456 (863)
+|+|+++|| .||+ +|||+++++|++++|| +||+|+ + |+.+ |++++.+.. +.+.++...+|+++|++++
T Consensus 41 ~~~g~~~~d~~~g~----~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~ 114 (449)
T 2cjg_A 41 RSGGSYLVDAITGR----RYLDMFTFVASSALGM-NPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVL 114 (449)
T ss_dssp TCBBTEEEBTTTCC----EEEESSHHHHTCSSCB-SCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHH
T ss_pred eeeeCEEEECCCCc----EEEEccCCccccCCCC-CCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhc
Confidence 489999999 9999 9999999999999999 799999 9 9999 998876644 4577889999999999998
Q ss_pred CCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCC-CCCCCC
Q 002941 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGF 535 (863)
Q Consensus 457 p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~-~~~~~~ 535 (863)
+....++|+|+|||+|||+.|+|++ +.|+..+|...|+ + .+.+.+||+++++|||.+.+++++++. +.++.
T Consensus 115 ~~~~~~~v~~~~~gseA~~~aik~a-~~~~~~~~~~~~~-~-----~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~- 186 (449)
T 2cjg_A 115 GDPALPHLFFVEGGALAVENALKAA-FDWKSRHNQAHGI-D-----PALGTQVLHLRGAFHGRSGYTLSLTNTKPTITA- 186 (449)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHHTTS-C-----TTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHT-
T ss_pred CCCCCCEEEEeCchHHHHHHHHHHH-HHHhccccccccc-c-----cCCCCEEEEECCCcCCcccchhhhcCCchhhcc-
Confidence 6212579999999999999999999 5564321100000 0 001368999999999999999998864 22211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcc--hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPE--WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
++.++. .++.++++++ .+. +.|. .......+.+++.+++
T Consensus 187 -------~~~~~~--------~~~~~~~~~d~~~~~---------------~~~~------~~~~~~~~~le~~i~~--- 227 (449)
T 2cjg_A 187 -------RFPKFD--------WPRIDAPYMRPGLDE---------------PAMA------ALEAEALRQARAAFET--- 227 (449)
T ss_dssp -------TSCCCC--------CCEECCCCCCTTCCH---------------HHHH------HHHHHHHHHHHHHHHH---
T ss_pred -------cCCCCC--------CCcEEEcCCCchhhc---------------cccc------hhhHHHHHHHHHHHHh---
Confidence 111110 1223333332 110 0010 0112234567777753
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCC
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLgg 693 (863)
+.+++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+|+++++++.||++||||++
T Consensus 228 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-- 302 (449)
T 2cjg_A 228 --RPHDIACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-- 302 (449)
T ss_dssp --STTTEEEEEECSE-ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG--
T ss_pred --cCCceEEEEEeCc-CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc--
Confidence 2357899999997 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
|+|++++++++++.+...- .....+++||++||++++|++++|+.++++++.+++.++++++.+.| .++..+
T Consensus 303 ---~iG~~~~~~~~~~~l~~~~-~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L----~~l~~~ 374 (449)
T 2cjg_A 303 ---QVCGVMAGRRVDEVADNVF-AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARL----DELAAD 374 (449)
T ss_dssp ---SSEEEEECGGGGGSTTCTT-TSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred ---cEEEEEECHHHhhhhhhcc-cCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HHHHhh
Confidence 8999999999988633100 01124778999999999999999999877677777777777776644 444456
Q ss_pred CCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 774 HRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 774 ~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+|. +..+++.|+|+++++... .....+++.|+++||++.+.| +.+|++||+.+|+++|++++++|+++++
T Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 446 (449)
T 2cjg_A 375 FPAVVLDPRGRGLMCAFSLPTT--------ADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALP 446 (449)
T ss_dssp STTTSEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCceeeEeeccEEEEEEECCh--------HHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 776 788999999999988642 135678999999999999986 8999999999999999999999999887
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
++
T Consensus 447 ~~ 448 (449)
T 2cjg_A 447 VV 448 (449)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=436.12 Aligned_cols=402 Identities=20% Similarity=0.207 Sum_probs=314.2
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++.+ |+|+++||.||+ +|+|+.+++|+.++|| +||+|++|+.++++++.+.. .++.++...+|+++|+++
T Consensus 26 ~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 97 (433)
T 1zod_A 26 PMIIER--AKGSFVYDADGR----AILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANI 97 (433)
T ss_dssp SSCCCE--EEBTEEECTTCC----EEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHH
T ss_pred CceEEE--eecCEEEeCCCC----EEEEcccchhccccCC-CCHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHh
Confidence 334444 788999999999 9999999999999999 89999999999999876533 467788899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+|.+ .++|+|++||+||++.|++++ +.+ +|+ .+||+++++|||.+.+++++++...+..
T Consensus 98 ~~~~-~~~v~~~~gg~ea~~~a~~~~-~~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~- 156 (433)
T 1zod_A 98 TPPG-LDRALLLSTGAESNEAAIRMA-KLV-------TGK-----------YEIVGFAQSWHGMTGAAASATYSAGRKG- 156 (433)
T ss_dssp SCTT-CCEEEEESCHHHHHHHHHHHH-HHH-------HTC-----------CEEEEETTCCCCSSHHHHHTCCSSCCSS-
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHh-------hCC-----------CeEEEECCCcCCCChhHHhhcCCccccc-
Confidence 8754 579999999999999999988 444 232 6899999999999999988876432211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+++. ..++..++.|..++ ..++... ++......+.+++.+++ .
T Consensus 157 --------~~~~--------~~~~~~v~~~~~~~---------------~~~~~~~--~~~~~~d~~~le~~l~~----~ 199 (433)
T 1zod_A 157 --------VGPA--------AVGSFAIPAPFTYR---------------PRFERNG--AYDYLAELDYAFDLIDR----Q 199 (433)
T ss_dssp --------SCCC--------CTTEEEECCCCTTS---------------CCCEETT--EECHHHHHHHHHHHHHH----H
T ss_pred --------cCCC--------CCCceEecCCcccc---------------cccCCch--hhhHHHHHHHHHHHHHh----c
Confidence 1110 12445566664331 0111000 00011124567777753 1
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++++|++||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||+++|||++++|
T Consensus 200 ~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G- 277 (433)
T 1zod_A 200 SSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG- 277 (433)
T ss_dssp CCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-
T ss_pred CCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCC-
Confidence 2357899999998 99999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... +.+++||++||++++++.++|+.++++++.+++.++.+++.+.+ .++...+|
T Consensus 278 ~~ig~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l----~~l~~~~~ 349 (433)
T 1zod_A 278 LPLAAIVTSAAIEERAHELG----YLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGL----LDLMERFD 349 (433)
T ss_dssp SSCEEEEECHHHHHHHHHTT----CCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHCT
T ss_pred CCeeEEEEhHHHHHhhccCC----CCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 89999999999999886521 24568999999999999999999876667777777776666644 44445678
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+|+.+++................+.+.|+++||++.+.+ +.+|++|++.+|++++++++++|++++
T Consensus 350 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l 429 (433)
T 1zod_A 350 CIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 429 (433)
T ss_dssp TEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 788899999999999874210000011235678899999999998864 899999999999999999999999988
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 430 ~~~ 432 (433)
T 1zod_A 430 ERA 432 (433)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-47 Score=430.92 Aligned_cols=388 Identities=18% Similarity=0.232 Sum_probs=298.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|+++++ |+|+++||.||+ +|||+.+++|++++|| +||+|++|+.+|+++..+ .++.++...+|+++|+++
T Consensus 39 p~~~~~--~~G~~~~d~~g~----~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~~ 108 (434)
T 2epj_A 39 PFYVKR--GEGAYLYTVDGA----RIVDLVLAYGPLILGH-KHPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILGY 108 (434)
T ss_dssp CCCEEE--EEBTEEEETTCC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHH
T ss_pred CeeEEe--eecCEEEECCCC----EEEEcccchhcccCCC-CCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHh
Confidence 456666 788999999999 9999999999999999 899999999999988432 246788899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+| + .++++|++||+||++.|+++| |.+ +++ .+||+++++|||.+.+++++++......
T Consensus 109 ~~-~-~~~v~~~~sgseA~~~al~~a-r~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~~- 166 (434)
T 2epj_A 109 VK-R-GGMIRFVNSGTEATMTAIRLA-RGY-------TGR-----------DLILKFDGCYHGSHDAVLVAAGSAAAHY- 166 (434)
T ss_dssp HC-T-TCEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEEETCCCCSSGGGSEECC-------
T ss_pred CC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CeEEEEcCCcCCCCHHHHHhcCCCcccc-
Confidence 86 3 589999999999999999998 545 232 6899999999999999888765321110
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
..++.. ..+... ...+..+ | + +| .+.+++.+++
T Consensus 167 -~~p~~~------g~~~~~-~~~~~~~--~---------------------~---~d--------~~~le~~l~~----- 199 (434)
T 2epj_A 167 -GVPTSA------GVPEAV-ARLTLVT--P---------------------Y---ND--------VEALERVFAE----- 199 (434)
T ss_dssp -CEESST------TCCHHH-HTTEEEE--E---------------------T---TC--------HHHHHHHHHH-----
T ss_pred -CCCCCC------CCCCcc-cCceEec--C---------------------C---CC--------HHHHHHHHHh-----
Confidence 000000 000000 0000111 1 0 12 2456666653
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++|+.||++||||++++|
T Consensus 200 ~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G- 276 (434)
T 2epj_A 200 YGDRIAGVIVEPV-IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG- 276 (434)
T ss_dssp HGGGEEEEEECSS-BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT-
T ss_pred CCCCEEEEEEeCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCC-
Confidence 2357999999998 9999999999999999999999999999999999999 899989999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.... ...+++||++||++|+++.++|+.++++++.+++.++++++.+.| .+...+++
T Consensus 277 ~~~G~v~~~~~~~~~l~~~~---~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~ 349 (434)
T 2epj_A 277 FPVGAVAGSREVMSLLTPQG---KVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAA----SEVLDRTG 349 (434)
T ss_dssp SSCEEEEECHHHHTTBTTTS---SBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH----HHHHHHHT
T ss_pred cceeeeeecHHHHHhhccCC---CcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHhhCC
Confidence 89999999999998876421 134778999999999999999999876677777877777777655 33334456
Q ss_pred CeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|+|+.+++.+.... ..........+.+.|+++||++.+.+.. ++.+++.+|++++++++++|++++
T Consensus 350 ~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~~~~t~e~i~~~l~~l~~~l 428 (434)
T 2epj_A 350 LPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLE-AVFTGLPHQGEALEIAVEGLRSSL 428 (434)
T ss_dssp CCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS-CEECCTTCSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCC-cEEEeccCCHHHHHHHHHHHHHHH
Confidence 6667899999999999752100 0001224567899999999999987521 345678999999999999999998
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 429 ~~~ 431 (434)
T 2epj_A 429 KTV 431 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=424.38 Aligned_cols=416 Identities=28% Similarity=0.421 Sum_probs=318.5
Q ss_pred hhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc
Q 002941 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (863)
Q Consensus 356 ~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~ 435 (863)
.+.+++|+|++.+.. ..+++++.+ |+|+++||.+|+ +|+|+.+++|++++|| .+|+|++|+.++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~~~~--~~g~~~~d~~g~----~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~ 78 (429)
T 1s0a_A 8 FDQRHILHPFTSMTS--PLPVYPVVS--AEGCELILSDGR----RLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSS--CCCCEEEEE--EEBTEEEETTSC----EEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCC
T ss_pred HHHHhhccccccccc--cCCceeEEe--eeeeEEEeCCCC----EEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccc
Confidence 345678999887532 223444666 788999999999 9999999999999999 7999999999999887654
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCC
Q 002941 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (863)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~s 515 (863)
.+..+.++...+++++|+++++.+ .++++|++||+||++.|++++ +.++..+|.+ +.+||+++.+
T Consensus 79 ~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~-~~~~~~~g~~-------------~~~vi~~~~~ 143 (429)
T 1s0a_A 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKGEA-------------RQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHTCC-------------CCEEEEETTC
T ss_pred cccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHhcccCCC-------------CCeEEEECCC
Confidence 333567888899999999999743 579999999999999999988 4554333321 2689999999
Q ss_pred CccCccccceecCCCC-CCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCch
Q 002941 516 YHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (863)
Q Consensus 516 YHG~t~gals~t~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 594 (863)
|||.+.+++++++... ++.. | .+.. .++..+++|..+. .+.++ ..|
T Consensus 144 yh~~~~~~~~~~~~~~~~~~~----~----~~~~--------~~~~~~~~~~~~~--------------~~~~~-~~d-- 190 (429)
T 1s0a_A 144 YHGDTFGAMSVCDPDNSMHSL----W----KGYL--------PENLFAPAPQSRM--------------DGEWD-ERD-- 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGGG----G----TTTS--------CCCEEECCCCSBC---------------CCCC-GGG--
T ss_pred CCCCchhhhhhcCCchhhccc----c----cCCC--------CCceEeCCCcccc--------------cccch-HHH--
Confidence 9999998888765432 2210 0 0000 1223344442100 00000 011
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch
Q 002941 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (863)
Q Consensus 595 ~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a 674 (863)
.+.+++.+++ +++++++|++||+.++++|.++++++|+++|+++|++||++||+||||+||||+|.+++
T Consensus 191 ------~~~l~~~l~~-----~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~ 259 (429)
T 1s0a_A 191 ------MVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259 (429)
T ss_dssp ------GHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred ------HHHHHHHHHh-----CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHH
Confidence 2455666642 23578999999943788999999999999999999999999999999999999999888
Q ss_pred hhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 675 ~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
++++++.||++||||+++|||+|+|++++++++++.+.... ...+.+++||++|+++++++.++|+.++++++.+++.+
T Consensus 260 ~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~-~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTST-TSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCC-CcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 89999999999999999999889999999999999886421 12233678999999999999999999877666677766
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 834 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~ 834 (863)
+.+++.+.+ .+ +..+|.+..+++.|+++.+++.... ....+...|+++||++++.++.+|++|++.+
T Consensus 339 ~~~~l~~~L----~~-l~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~Gi~v~~~~~~iRis~~~~~ 405 (429)
T 1s0a_A 339 IEVQLREQL----AP-ARDAEMVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLMPPYII 405 (429)
T ss_dssp HHHHHHHHH----GG-GGGCTTEEEEEEETTEEEEEESSCB--------CHHHHHHHHHHTTEECCCBTTEEEECCCTTC
T ss_pred HHHHHHHHH----HH-HhcCCCEEEEEEeeEEEEEEECCcc--------cHHHHHHHHHHCCCEEeccCCEEEEECCCCC
Confidence 666655533 22 2236777778999999999886421 1456888899999999998899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l 853 (863)
|++++++++++|+++++++
T Consensus 406 t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 406 LPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CHHHHHHHHHHHHHHTSSG
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887543
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=421.19 Aligned_cols=384 Identities=20% Similarity=0.258 Sum_probs=295.9
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|+|+.+++|++++|| +||+|++|+.+|+++..+ .++.++...+|+++|+++
T Consensus 35 p~~~~~--~~g~~~~d~~g~----~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~ 104 (424)
T 2e7u_A 35 PPFLVR--GEGAYVWDADGN----RYLDYVMSWGPLILGH-AHPKVLARVRETLERGLT---FGAPSPLEVALAKKVKRA 104 (424)
T ss_dssp CCCEEE--EEBTEEEETTCC----EEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHH
T ss_pred CeeEEe--eecCEEEeCCCC----EEEEccccccccccCC-CCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHh
Confidence 556666 788999999999 9999999999999999 899999999999988432 246788899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
+| + .++++|++||+||++.|+++| |.+ +++ .+||+++++|||.+.+++++++.....
T Consensus 105 ~~-~-~~~v~~~~~g~ea~~~al~~a-r~~-------~~~-----------~~vi~~~~~yhg~~~~~~~~~~~~~~~-- 161 (424)
T 2e7u_A 105 YP-F-VDLVRFVNSGTEATMSALRLA-RGY-------TGR-----------PYIVKFRGNYHGHADGLLVEAGSGALT-- 161 (424)
T ss_dssp CT-T-CCEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCCCGGGSEECCSSSCC--
T ss_pred CC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----------CEEEEECCCcCCCcHHHHHhcCCcccc--
Confidence 86 3 589999999999999999998 555 232 689999999999999888776532111
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+..++.. ..+... ...+.. +| + +| .+.+++.+++
T Consensus 162 ~~~p~~~------g~~~~~-~~~~~~--~~---------------------~---~d--------~~~le~~l~~----- 195 (424)
T 2e7u_A 162 LGVPSSA------GVPEEY-AKLTLV--LE---------------------Y---ND--------PEGLREVLKR----- 195 (424)
T ss_dssp BCEESST------TCCHHH-HTTEEE--EC---------------------T---TC--------HHHHHHHHHH-----
T ss_pred cCCCCCC------CCCCcc-CCceEe--CC---------------------C---CC--------HHHHHHHHHh-----
Confidence 0000000 000000 000111 11 0 12 2456666642
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++++||+||+ ++++|+++++++|+++|+++ ++||++||+||||+|| |+|.+++++++|+.||++||||++++|
T Consensus 196 ~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G- 271 (424)
T 2e7u_A 196 RGEEIAAIIFEPV-VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG- 271 (424)
T ss_dssp HGGGEEEEEECSS-BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-
T ss_pred CCCCEEEEEEeCC-CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCC-
Confidence 1357999999998 88899999999999999999 9999999999999999 999989999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.... ...+++||++||++|++++++|+.+++ +++.+++.++++++++.| .+...++
T Consensus 272 ~~~G~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 344 (424)
T 2e7u_A 272 LPAAAYAGRREIMEKVAPLG---PVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGL----KEVLKEK 344 (424)
T ss_dssp SSCEEEEECHHHHTTBTTTS---SBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred cceEEEEEcHHHHhhhcccC---CcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 89999999999999886421 235778999999999999999999876 667777777777776654 4444556
Q ss_pred CCeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+..+++.|+|+.+++.+.... ..........+.+.|+++||++.+.+.. ++.+++.+|++++++++++|+++
T Consensus 345 ~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 345 GLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFE-AAFLSVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSS-CEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCC-ceEeeccCCHHHHHHHHHHHHHh
Confidence 76667899999999998642100 0001234667899999999999987521 24567899999999999999875
Q ss_pred H
Q 002941 850 L 850 (863)
Q Consensus 850 l 850 (863)
+
T Consensus 424 l 424 (424)
T 2e7u_A 424 L 424 (424)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=418.48 Aligned_cols=421 Identities=17% Similarity=0.148 Sum_probs=292.1
Q ss_pred HHHHHHhHhhcChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHH
Q 002941 341 LAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420 (863)
Q Consensus 341 ~~~~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~ 420 (863)
+++.++..+...+.++..+++..............|+++++ |+|+++||.||+ +|+|+.+++|++++|| +||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~G~~~~d~~g~----~~iD~~~~~~~~~lg~-~~~~ 77 (453)
T 2cy8_A 5 NDYKRKTEGSVFWAQRARSVMPDGVTADTRAFDPHGLFISD--AQGVHKTDVDGN----VYLDFFGGHGALVLGH-GHPR 77 (453)
T ss_dssp HHHHHHCHHHHHHHHHHHHHSCCC------CCSSCCCCEEE--EEBTEEEETTCC----EEEESCTTTTSCTTCB-TCHH
T ss_pred HHHHhcCchhHHHHHHHHhhcCCCCCccccccCCCCceEEE--eecCEEEECCCC----EEEECcccHhhcccCC-CCHH
Confidence 34444455555566666655532111110000112456665 788999999999 9999999999999999 8999
Q ss_pred HHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCc
Q 002941 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~ 500 (863)
|++|+.+|+++..+ .++.++...+++++|++..| + .++|+|++||+||++.|+++| |.+ +++
T Consensus 78 v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~a-r~~-------~~~----- 139 (453)
T 2cy8_A 78 VNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVA-RAF-------TGR----- 139 (453)
T ss_dssp HHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHH-HHH-------HCC-----
T ss_pred HHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHH-HHh-------hCC-----
Confidence 99999999987432 24678899999999999886 3 689999999999999999998 445 232
Q ss_pred cccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccccc
Q 002941 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (863)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (863)
.+||.++++|||.+.++++.++. .|.. ++..+ .|... ...+..+++
T Consensus 140 ------~~vi~~~~~yhg~~~~~~~~~~~-~~~~----~~~~g------~~~~~-~~~~~~~~~---------------- 185 (453)
T 2cy8_A 140 ------RMILRFEGHYHGWHDFSASGYNS-HFDG----QPAPG------VLPET-TANTLLIRP---------------- 185 (453)
T ss_dssp ------CEEEEECC---------------------------------------C-GGGEEEECT----------------
T ss_pred ------CEEEEEcCCcCCCchhhHhhcCC-ccCC----CcCCC------CCccc-cCceeecCC----------------
Confidence 67999999999999988776542 1100 00000 00000 000111110
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
+| .+.+++.+++ +++++++|++||+ ++++|+++++++|+++|+++|++||++||+|
T Consensus 186 ----------~d--------~~~le~~l~~-----~~~~~~~vi~ep~-~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D 241 (453)
T 2cy8_A 186 ----------DD--------IEGMREVFAN-----HGSDIAAFIAEPV-GSHFGVTPVSDSFLREGAELARQYGALFILD 241 (453)
T ss_dssp ----------TC--------HHHHHHHHHH-----HGGGEEEEEECSS-EHHHHTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------CC--------HHHHHHHHHh-----cCCCEEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 12 2456666652 2357999999997 8889999999999999999999999999999
Q ss_pred cccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHH
Q 002941 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (863)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL 740 (863)
|||+|| |+|.+++++++++.||++++||++++| +|+|++++++++++.+.... .....+++||++||++|+++.++|
T Consensus 242 Ev~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~-~~~~~~~~t~~~n~~~~aa~~aal 318 (453)
T 2cy8_A 242 EVISGF-RVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGS-DRKVLHQGTFTGNPITAAAAIAAI 318 (453)
T ss_dssp CTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSCC----------CCCCHHHHHHHHHHH
T ss_pred cCcccc-ccCchhhhHHhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhcccc-CCCceeCCCCCCCHHHHHHHHHHH
Confidence 999999 999989999999999999999999999 79999999999998876410 011347789999999999999999
Q ss_pred HH-hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEcc-----CC------cCCCCchHHHHHH
Q 002941 741 KW-FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQA-----AG------CNAGYGSLYAASL 808 (863)
Q Consensus 741 ~~-l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~-----~~------~~~~~~~~~~~~l 808 (863)
+. + ++++.+++.++.+++.+.+ .+...+++.+..+++.|+|+.+++.. .. ............+
T Consensus 319 ~~~~-~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (453)
T 2cy8_A 319 DTIL-EDDVCAKINDLGQFAREAM----NHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAM 393 (453)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHH----HHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHH
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHH----HHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHH
Confidence 98 7 5666777777777776654 34444567667789999999999974 10 0000012235678
Q ss_pred HHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 809 LKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 809 ~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
...|+++||+++|.+ .+ .+++.++++++++++++|+++++++.+
T Consensus 394 ~~~l~~~Gv~v~~~~-~~--~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 394 RMALILEGVDIGGRG-SV--FLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp HHHHHHTTEECBTTT-EE--ECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeCCC-CE--EeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 899999999997654 34 357899999999999999999987643
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-44 Score=404.96 Aligned_cols=387 Identities=21% Similarity=0.286 Sum_probs=292.9
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCC-cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~-~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
|.++.+ |+|+++||.+|+ +|+|+.++.|++++|| + ||+|++|+.+++++..+.....+.++...+|+++|++
T Consensus 25 ~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (419)
T 2eo5_A 25 PLVIDH--GEGVWIYDVDGN----KYLDFTSGIGVNNLGW-PSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVT 97 (419)
T ss_dssp CCCEEE--EEBTEEEETTSC----EEEESSGGGGTTTTCB-SCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHH
T ss_pred CceEEe--eecCEEEECCCC----EEEEccCChhhhccCC-CCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHH
Confidence 445655 788999999999 9999999999999999 6 9999999999998876533345678889999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCC-CCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~-~~~ 533 (863)
++|.+..++++|++||+||++.|++++ +.+ +| .+||+++.+|||.+..++++++.. .++
T Consensus 98 ~~~~~~~~~v~~~~gg~ea~~~ai~~~-~~~-------~~------------~~vi~~~p~yh~~~~~~~~~~~~~~~~~ 157 (419)
T 2eo5_A 98 YSPGNFQKKVFFSNSGTEAIEASIKVV-KNT-------GR------------KYIIAFLGGFHGRTFGSISLTASKAVQR 157 (419)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HTT-------SC------------CEEEEETTCCCCSSHHHHHHCCSCGGGG
T ss_pred hCCCCcCCEEEEeCchHHHHHHHHHHH-HHh-------hC------------CcEEEECCCcCCCCHhhHhhcCCccccc
Confidence 987431258999999999999999988 322 11 679999999999999998887643 222
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc--cCc-hhHHHHHHHHHH-HHHh
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE--RDS-SDLASIYSSYIS-QNLL 609 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~d~-~~~~~~~~~~le-~~l~ 609 (863)
.. ..+. ..++..+++++.++ ..|+.. ++. .+.. ...+.++ +.+.
T Consensus 158 ~~--------~~~~--------~~~~~~v~~~~~~~---------------~~~g~~~~~~~~~~~~-~~~~~l~~~~i~ 205 (419)
T 2eo5_A 158 SI--------VGPF--------MPGVIHVPYPNPYR---------------NPWHINGYENPSELVN-RVIEFIEDYIFV 205 (419)
T ss_dssp CS--------SCCC--------CTTEEEECCCCSSS---------------CTTCCCTTTCHHHHHH-HHHHHHHHTHHH
T ss_pred cc--------cCCC--------CCCCEEECCCcccc---------------ccccccccccchhhHH-HHHHHHHHHHHh
Confidence 11 0100 01344455554321 001100 000 0000 1245666 6665
Q ss_pred cCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEecc
Q 002941 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689 (863)
Q Consensus 610 ~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sK 689 (863)
+ ..+++++++|++||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||
T Consensus 206 ~---~~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK 281 (419)
T 2eo5_A 206 N---LVPPEEVAGIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAK 281 (419)
T ss_dssp H---TCCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECG
T ss_pred h---ccCCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecc
Confidence 3 112257899999997 999999999999999999999999999999999999999999888899999999999999
Q ss_pred ccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 690 gLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
++++||+|+|+++++++++ .+ .. .+.+||++||++++++.++|+.+++ +.++++++.+++.+ .+
T Consensus 282 ~~~~G~~riG~~~~~~~~~-~~-~~------~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~----~L-- 345 (419)
T 2eo5_A 282 ALGGGIMPIGATIFRKDLD-FK-PG------MHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAE----EL-- 345 (419)
T ss_dssp GGGTTTSCCEEEEEEGGGC-CC-------------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HH--
T ss_pred cccCCccceEEEEEchHhh-cC-Cc------ccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HH--
Confidence 9999988999999999987 65 31 3678999999999999999998753 45555555544443 32
Q ss_pred HHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 770 QISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 770 ~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+. +..+++.|+|+.+++.... ..+. +...|+++||++++.+ +.+|++|++.+|++++++++++|++
T Consensus 346 --~~~--~~~~~~~g~~~~i~~~~~~-------~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~ 413 (419)
T 2eo5_A 346 --QGL--ADDVRGIGLAWGLEYNEKK-------VRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKK 413 (419)
T ss_dssp --TTS--SSEEEEETTEEEEECSCHH-------HHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred --HHh--hhheEeeeEEEEEEEecCc-------cHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222 4577899999999884211 1245 8888999999999975 8999999999999999999999999
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
+++++
T Consensus 414 ~l~~~ 418 (419)
T 2eo5_A 414 VIKVV 418 (419)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=390.63 Aligned_cols=372 Identities=20% Similarity=0.266 Sum_probs=299.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|.++++ |+|+++||.||+ +|+|+++++|+.++|| +||+|.+|+.++++++.+... .+.++...+|+++|++.
T Consensus 19 ~~~~~~--~~g~~~~d~~g~----~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~ 90 (392)
T 3ruy_A 19 PIVISK--AEGVWVEDPEGN----RYMDLLSAYSAVNQGH-RHPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKVAKL 90 (392)
T ss_dssp SCEECE--EEBTEEECTTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHHHHH
T ss_pred CceEEe--eeeCEEEeCCCC----EEEEcCCChhhhccCC-CCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHHh
Confidence 445665 788999999999 9999999999999999 899999999999998876542 35678899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||++|++.|++++++.++..+|.++| +.+||+...+|||.+.+++++++...++..
T Consensus 91 ~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~-----------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T 3ruy_A 91 TN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEAN-----------RAEIIVCEDNFHGRTMGAVSMSSNEEYKRG 156 (392)
T ss_dssp HT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTT-----------CCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred cC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCC-----------CcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence 87 4799999999999999999885332344444333 268999999999999999888776544421
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+.. + ++..+++ +| .+.+++.++
T Consensus 157 ~--------~~~~--~------~~~~~~~--------------------------~d--------~~~l~~~l~------ 180 (392)
T 3ruy_A 157 F--------GPML--P------GIIVIPY--------------------------GD--------LEALKAAIT------ 180 (392)
T ss_dssp C--------CSCC--S------SEEEECT--------------------------TC--------HHHHHHHCC------
T ss_pred c--------CCCC--C------CCeeeCc--------------------------cc--------HHHHHHHhc------
Confidence 1 1110 0 1111111 12 244555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++++|++||+ ++++|.+.++++|+++|.++|++||++||+||+|+|||++|.+++.+.+++.||++||||+|+||+
T Consensus 181 --~~~~~v~~~~~-~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG~ 257 (392)
T 3ruy_A 181 --PNTAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGGV 257 (392)
T ss_dssp --TTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTT
T ss_pred --cCeEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCCh
Confidence 47899999997 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+.. ..++++|+.|+++++++.++|+.++++++.+++.++.+++.+.| .+. ..+
T Consensus 258 ~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~~--~~~ 325 (392)
T 3ruy_A 258 FPISCAAANRDILGVFEP------GSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQL----KEI--DNP 325 (392)
T ss_dssp SCCEEEEECHHHHTTCCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----TTC--CCT
T ss_pred hhhEEEEECHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHh--cCC
Confidence 899999999999887754 24678999999999999999998865555555555555554422 211 236
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|.++.+.+..+ ...+.+.|+++||++++.+ +.+|+.|++.+|++++++++++|++++
T Consensus 326 ~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 326 MITEVRGKGLFIGIELNEP----------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TEEEEEEETTEEEEEESSC----------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEeeeeEEEEEEcch----------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6788899999999997542 3568889999999999875 899999999999999999999998876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=385.71 Aligned_cols=379 Identities=25% Similarity=0.295 Sum_probs=306.3
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++++ |+|+++||.+|+ +|+|+.+++|++++|| +||+|.+|+.++++++.+.. ..+.++...+|+++|+++
T Consensus 22 ~~~~~~--~~g~~~~~~~g~----~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 93 (406)
T 4adb_A 22 PFIPVR--GEGSRLWDQQGK----EYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDA 93 (406)
T ss_dssp SSCEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHHH
T ss_pred CceEEe--eccCEEEeCCCC----EEEECCCchhhcccCC-CCHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHhh
Confidence 345555 788999999999 9999999999999999 89999999999999876543 346778899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+ .++++|++||++|++.|+++++ .++..+|.+ | +.+||+.+.+|||.+..++.+++...+...
T Consensus 94 ~~---~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~~-g-----------~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~ 157 (406)
T 4adb_A 94 TF---ADRVFFCNSGAEANEAALKLAR-KFAHDRYGS-H-----------KSGIVAFKNAFHGRTLFTVSAGGQPAYSQD 157 (406)
T ss_dssp SS---CSEEEEESSHHHHHHHHHHHHH-HHHHHHTCT-T-----------CCEEEEETTCCCCSSHHHHHHSSCGGGTGG
T ss_pred CC---CCeEEEeCcHHHHHHHHHHHHH-HHHHhcCCC-C-----------CcEEEEECCCcCCCcHHHhhccCCcccccc
Confidence 87 4699999999999999999884 454444432 3 268999999999999988888765443211
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+ .+.. .++..++++ | .+.+++.+
T Consensus 158 ~------------~~~~----~~~~~~~~~--------------------------d--------~~~l~~~l------- 180 (406)
T 4adb_A 158 F------------APLP----ADIRHAAYN--------------------------D--------INSASALI------- 180 (406)
T ss_dssp G------------CSCC----SSEEEECTT--------------------------C--------HHHHHTTC-------
T ss_pred C------------CCCC----CCceEeCCC--------------------------c--------HHHHHHHh-------
Confidence 0 0000 111122211 1 13344333
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.+++++|++||+ ++.||+++++.+++++|.++|++||++||+||+|+|||++|..++.+.+++.||++||||++++|
T Consensus 181 -~~~~~~v~~~p~-np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G- 257 (406)
T 4adb_A 181 -DDSTCAVIVEPI-QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG- 257 (406)
T ss_dssp -STTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT-
T ss_pred -cCCeEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCC-
Confidence 157899999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|+|++++++++++.+... .+++||++++++++++.++|+.++++++.++++++.+++.+.+ .+....++
T Consensus 258 ~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~ 327 (406)
T 4adb_A 258 FPVGALLATEECARVMTVG------THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL----NTINHRYG 327 (406)
T ss_dssp SCCEEEEECHHHHHTCCTT------SSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH----HHHHHHHC
T ss_pred CCeEEEEEcHHHHhhhccC------CcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 8999999999999887642 4678999999999999999999877766777777666666654 33434456
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.++++.|.++.+++.... ......+.+.|+++||++.+.+ +.+|+.|++.++++++++++++|+++++++.
T Consensus 328 ~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 328 LFSEVRGLGLLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp CEEEEEEETTEEEEEECTTT------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999997531 0025678999999999999875 8999999999999999999999999998764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=383.30 Aligned_cols=414 Identities=24% Similarity=0.334 Sum_probs=313.1
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+++.+++|++++. ..|.++.+ |+|+++||.+|+ +|+|+.++.|+.++|| .+|+|.+|+.++++++
T Consensus 7 ~~~~~~~~~~~~~~~------~~~~~~~~--~~g~~~~d~~g~----~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~ 73 (426)
T 1sff_A 7 LMQRRSQAIPRGVGQ------IHPIFADR--AENCRVWDVEGR----EYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKL 73 (426)
T ss_dssp HHHHHHHHSCTTBCC------SEEEEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCccccc------cCCceEEe--cccCEEEeCCCC----EEEEcccChhhcccCC-CCHHHHHHHHHHHHhC
Confidence 344555667766553 13566665 788999999999 9999999999999999 8999999999999886
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.....+.++...+|.++|+++++.+..++++|++||++|++.|+++| +.+. ++ .+||++
T Consensus 74 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a-~~~~-------~~-----------~~vi~~ 134 (426)
T 1sff_A 74 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAAT-------KR-----------SGTIAF 134 (426)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHH-------TC-----------CEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHH-HHhh-------CC-----------CeEEEE
Confidence 5543233567888999999999984321278999999999999999987 4441 21 479999
Q ss_pred cCCCccCccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 513 KGSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
+.+|||.+..++.+++.. .|+. .+++. ..++..++++.+++ +
T Consensus 135 ~p~y~~~~~~~~~~~g~~~~~~~--------~~~~~--------~~~v~~v~~~~~~~---------------------~ 177 (426)
T 1sff_A 135 SGAYHGRTHYTLALTGKVNPYSA--------GMGLM--------PGHVYRALYPCPLH---------------------G 177 (426)
T ss_dssp TTCCCCSSHHHHHHSSCCTTTTT--------TSCCC--------CSSEEEECCCBGGG---------------------T
T ss_pred CCCcCCCchHhhhhcCCcccccc--------ccCCC--------CCCcEEeCCCcccc---------------------c
Confidence 999999998877776532 2221 11110 01233444442210 0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+ . .....+.+++.+++. .++.++++|++||+ ++++|.++++++++++|.++|++||++||+||+|+|||++|.
T Consensus 178 ~--~-~~~d~~~l~~~l~~~---~~~~~~~~v~~~p~-~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~ 250 (426)
T 1sff_A 178 I--S-EDDAIASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT 250 (426)
T ss_dssp B--C-HHHHHHHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred c--c-hHHHHHHHHHHHHhc---cCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc
Confidence 0 0 001135566666531 12357899999998 777998999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+++++.+++.||+++|||++++| +|+|++++++++++.+... .+.+|+++||++++++.++|+.++++++.++
T Consensus 251 ~~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~ 323 (426)
T 1sff_A 251 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG------GLGGTYAGNPIACVAALEVLKVFEQENLLQK 323 (426)
T ss_dssp SSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCTT------SBCCSSSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhccC------CcCcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888899999999999999999 8999999999998877531 3668999999999999999999876666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEE
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYL 828 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~ 828 (863)
+.++.+++.+.+ .++...++.+..+++.|.++.+++........+.......+.+.|+++||++.+.+ +.+|+
T Consensus 324 ~~~~~~~l~~~l----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi 399 (426)
T 1sff_A 324 ANDLGQKLKDGL----LAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399 (426)
T ss_dssp HHHHHHHHHHHH----HHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEE
T ss_pred HHHHHHHHHHHH----HHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEE
Confidence 766666666544 34444567777788889999999964210000112245678899999999999864 88999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+++.++++++++++++|+++++++
T Consensus 400 ~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 400 LVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=359.77 Aligned_cols=374 Identities=20% Similarity=0.269 Sum_probs=291.3
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++.+ |+|+++||.+|+ +|+|+.+++|++++|| ++|+|.+|+.++++++.+.. ..+.++...+|+++|++
T Consensus 22 ~~~~~~~--~~g~~~~d~~g~----~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 93 (397)
T 2ord_A 22 FPATFVY--GKGSWIYDEKGN----AYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELLSK 93 (397)
T ss_dssp CSCEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHHHH
T ss_pred CCceEEe--eecCEEEECCCC----EEEECCccccccccCC-CCHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHHHH
Confidence 4556666 788999999999 9999999999999999 89999999999999876543 23456889999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+++ .++++|++||++|++.|++.+ +.++.. +. +| +.+||+++.+|||.+..++...+...++.
T Consensus 94 ~~g---~~~v~~~~gg~~a~~~al~~~-~~~~~~-~~-~~-----------~~~vi~~~~~yh~~~~~~~~~~g~~~~~~ 156 (397)
T 2ord_A 94 NTF---GGKVFFANTGTEANEAAIKIA-RKYGKK-KS-EK-----------KYRILSAHNSFHGRTLGSLTATGQPKYQK 156 (397)
T ss_dssp TTT---SCEEEEESSHHHHHHHHHHHH-HHHHHH-HC-TT-----------CCEEEEEBTCCCCSSHHHHHHSBCHHHHG
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhc-CC-CC-----------CceEEEEcCCcCCCchhhhhccCChhhcc
Confidence 987 479999999999999999988 333221 11 12 25799999999999887666554221110
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
++.+.. .++..++. +| .+.+++.+.
T Consensus 157 --------~~~p~~--------~~~~~~~~--------------------------~d--------~~~l~~~l~----- 181 (397)
T 2ord_A 157 --------PFEPLV--------PGFEYFEF--------------------------NN--------VEDLRRKMS----- 181 (397)
T ss_dssp --------GGCSCC--------TTEEEECT--------------------------TC--------HHHHHHHCC-----
T ss_pred --------ccCCCC--------CCeeEecC--------------------------CC--------HHHHHHHhh-----
Confidence 000000 11111211 11 244555552
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++++|++||+ ++.+|.++++.+++++|.++|++||++||+||+|+||+++|..+..+.+++.||+++|||++++|
T Consensus 182 ---~~~~~v~~~~~-~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G 257 (397)
T 2ord_A 182 ---EDVCAVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGG 257 (397)
T ss_dssp ---TTEEEEEECSE-ECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT
T ss_pred ---cCeEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCCC
Confidence 36899999997 99999988899999999999999999999999999999999888888889899999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|+++++++++ .+.. ..+..||++++++++++.++|+.++++++.+++.++.+++.+.| .+....+
T Consensus 258 -~r~G~~~~~~~~~-~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~ 325 (397)
T 2ord_A 258 -VPIGAVIVNERAN-VLEP------GDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL----QEMKEEY 325 (397)
T ss_dssp -SCCEEEEECSTTC-CCCT------TSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred -cCeEEEEEchHhc-ccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7999999998876 5532 13667899999999999999999876666666666666666544 3332346
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+.+..+++.|.++.+++.... ...++.+.|+++||++.+.+ +.+|+.|++.++++++++++++|++++++
T Consensus 326 ~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 326 DVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp TTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 766677889999999886431 25678889999999999974 79999999999999999999999988753
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=335.94 Aligned_cols=365 Identities=22% Similarity=0.291 Sum_probs=282.0
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
+.++.+ |+|+++||.+|+ .|+|+.++.|++++|| .+|+|.+|+.++++++.+.. ..+..+...+++++|+++
T Consensus 28 ~~~~~~--~~g~~~~d~~g~----~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 99 (395)
T 1vef_A 28 DLLIVR--GQGARVWDAEGN----EYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAI 99 (395)
T ss_dssp SSCEEE--EEBTEEEETTSC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHT
T ss_pred CccEEe--cccCEEEeCCCC----EEEEccCccccccCCC-CCHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHHh
Confidence 345555 788999999998 9999999999999999 89999999999998876542 235678899999999999
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
++.+ .+.++|++||++|++.|++.+ +.+. + +.+||+++.+|||.+..++...+...++
T Consensus 100 ~~~~-~~~v~~~~gg~~a~~~al~~~-~~~~-------~-----------~~~vi~~~~~y~~~~~~~~~~~g~~~~~-- 157 (395)
T 1vef_A 100 LPPE-LNRVFPVNSGTEANEAALKFA-RAHT-------G-----------RKKFVAAMRGFSGRTMGSLSVTWEPKYR-- 157 (395)
T ss_dssp SCTT-EEEEEEESSHHHHHHHHHHHH-HHHH-------S-----------CCEEEEETTCCCCSSHHHHHTCCCHHHH--
T ss_pred cCCC-cCEEEEcCcHHHHHHHHHHHH-HHHh-------C-----------CCeEEEEcCCcCCCchhhhhhcCCcccc--
Confidence 8643 478999999999999999987 3331 1 1579999999999987666554321100
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
.+ +. |.. .++..++. .| .+.+++.+.
T Consensus 158 ------~~---~~--p~~---~~~~~~~~--------------------------~d--------~~~l~~~i~------ 183 (395)
T 1vef_A 158 ------EP---FL--PLV---EPVEFIPY--------------------------ND--------VEALKRAVD------ 183 (395)
T ss_dssp ------GG---GC--SCS---SCEEEECT--------------------------TC--------HHHHHHHCC------
T ss_pred ------cc---cC--CCC---CCeeEeCC--------------------------Cc--------HHHHHHHhc------
Confidence 00 00 000 00111111 11 244555552
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
+++++|+++|+ ++..|.+.++++++++|.++|++||++||+||+|+|||++|..+.++.+++.||+++|+|++++|
T Consensus 184 --~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g- 259 (395)
T 1vef_A 184 --EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG- 259 (395)
T ss_dssp --TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT-
T ss_pred --cCEEEEEEeCc-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCC-
Confidence 35789999997 88899999999999999999999999999999999999999888888889999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+++|++++++++++.+... .+.+|++.++++++++.++|+.++++++.+++.++.+++.+.+ .+. ..+
T Consensus 260 ~~~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l----~~~--~~~ 327 (395)
T 1vef_A 260 VPLGVAVMREEVARSMPKG------GHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKL----RAI--PSP 327 (395)
T ss_dssp SSCEEEEEEHHHHHTSCTT------SSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----HTS--CCT
T ss_pred CceEEEEehHHHHhhhccC------CcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHh--hcC
Confidence 8999999999988877542 2567889999999999999998865555566665555555432 221 124
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+..+++.|.++.+++..+ ...+.+.|. ++||++.+.+ +.+|+.+++.++++++++++++|++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 328 KIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4556778899999988632 346788888 9999999874 899999888999999999999998875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=319.97 Aligned_cols=364 Identities=20% Similarity=0.279 Sum_probs=276.6
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.++.+ |+|.++||.+|+ .|+|+.++.+++.+|| .+|++.+|+.++++++.+.. ..+.++...+|.++|++
T Consensus 10 ~~~~~~~--~~g~~~~~~~g~----~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~ 81 (375)
T 2eh6_A 10 LPVKFVR--GKGVYLYDEEGK----EYLDFVSGIGVNSLGH-AYPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLVK 81 (375)
T ss_dssp EEEEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-SCHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHHH
T ss_pred CCccEEe--eecCEEEeCCCC----EEEEcCCcccccccCC-CCHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHHh
Confidence 4556665 788999999998 9999999998889998 79999999999998865432 24556778899999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
+++. .+.++|++||++|++.+++++ +.+.. ++. +|| .+||+.+.+|||....++..++...++.
T Consensus 82 ~~g~--~~~v~~~~g~t~a~~~~~~~~-~~~~~-~~~-~g~-----------~~vl~~~~~y~~~~~~~~~~~~~~~~~~ 145 (375)
T 2eh6_A 82 HFWT--EGKVFFANSGTESVEAAIKLA-RKYWR-DKG-KNK-----------WKFISFENSFHGRTYGSLSATGQPKFHK 145 (375)
T ss_dssp TSSS--CEEEEEESSHHHHHHHHHHHH-HHHHH-HTT-CCC-----------CEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred hcCC--CCeEEEeCchHHHHHHHHHHH-HHHhc-cCC-CCC-----------CEEEEECCCcCCCchhhhhhcCCccccC
Confidence 9873 178999999999999999986 43421 111 132 6799999999999887776654332110
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
+..+. . .++..++.+ | .+.+++.+.
T Consensus 146 --------~~~~~-~-------~~~~~~~~~--------------------------d--------~~~l~~~l~----- 170 (375)
T 2eh6_A 146 --------GFEPL-V-------PGFSYAKLN--------------------------D--------IDSVYKLLD----- 170 (375)
T ss_dssp --------TTCSC-C-------SSEEEECTT--------------------------C--------HHHHHTTCC-----
T ss_pred --------CCCCC-C-------CCceeCCCc--------------------------h--------HHHHHHHhc-----
Confidence 00000 0 011111111 1 133433331
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
+++.+|+++|+ ++.+|.+.++++++++|.++|++||++||+||+|+|||++|..+..+.+|..||+++|||.+++|
T Consensus 171 ---~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~g 246 (375)
T 2eh6_A 171 ---EETAGIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGG 246 (375)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEeCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccCC
Confidence 36889999997 99999999999999999999999999999999999999998777778888889999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+++|++++++++++.+... .++.+++.++++++++.++|+.++ ++.+++.++.+++.+.| . +.
T Consensus 247 -~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L----~----~~ 309 (375)
T 2eh6_A 247 -VPIGAILAREEVAQSFTPG------SHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKL----K----EL 309 (375)
T ss_dssp -SCCEEEEEEHHHHTTCCTT------SCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----H----HT
T ss_pred -CCeEEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----H----HH
Confidence 8999999999988876541 256788899999999999999775 44555555555544432 2 22
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+. ..+++.|.++.+++..+ ..++++.|+++||++.+. .+.+|+.++..++++++++++++|+++
T Consensus 310 ~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 310 GK-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp TS-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hc-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 32 34567899999988532 346788889999999986 489999998899999999999999875
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=295.34 Aligned_cols=192 Identities=22% Similarity=0.245 Sum_probs=162.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC-CCchhHHHhhccccccccCCCccccccc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRFLFTKLPSLSLRRNFPSSLILSN 114 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
.|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+.. +.|..++.+. .++.
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~-----~~G~~V~~fKPv~~g~~~~~~D~~~~~~~-~g~~------------- 85 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAAR-----QAGIDVAVCKPVQTGTARGDDDLAEVGRL-AGVT------------- 85 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEEECCGGGTCCHHHHHHHH-HCCC-------------
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeeeecCCCCCCHHHHHHHHH-cCCC-------------
Confidence 4788999999999999999999999999 999999999999999743 4565555443 2220
Q ss_pred hhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCC-CCC
Q 002941 115 SILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG-VVG 193 (863)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~-~~~ 193 (863)
...++|.|+.|.+|+.+++++ +. .++
T Consensus 86 ----------------------------------------------------~~~~~~~~~~p~sP~~aa~~~-~~~~~~ 112 (251)
T 3fgn_A 86 ----------------------------------------------------QLAGLARYPQPMAPAAAAEHA-GMALPA 112 (251)
T ss_dssp ----------------------------------------------------EEEEEEECSSSSCHHHHHHHT-TCCCCC
T ss_pred ----------------------------------------------------CCCCCeeECCCCChHHHHHHc-CCCCCC
Confidence 114689999999999999998 77 688
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCC-CcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG-SLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~-~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
.+.+.+.+.++.+++ |++||||+||+++|++.. .+++|+|+.+++|||||++.++|++++++++++
T Consensus 113 ~~~i~~~~~~l~~~~-------------D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~ 179 (251)
T 3fgn_A 113 RDQIVRLIADLDRPG-------------RLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLE 179 (251)
T ss_dssp HHHHHHHHHTTCCTT-------------CEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------CEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHH
Confidence 999999988876665 999999999999998665 799999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEcCCCC-C------CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHGL-V------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~~-~------~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
+++.+|++|+|||+|++.. . +.+.|+++ +|||| ||+....
T Consensus 180 ~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~----vpvLG~iP~~~~~ 227 (251)
T 3fgn_A 180 ALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI----AMVRAALPAGAAS 227 (251)
T ss_dssp HHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH----SCEEEEEETTGGG
T ss_pred HHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh----CCEEEEeeCCCCc
Confidence 9999999999999999842 2 22333333 99999 9997653
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=289.88 Aligned_cols=194 Identities=22% Similarity=0.266 Sum_probs=158.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCC----CCchhHHHhhccccccccCCCcccc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH----DSDSRFLFTKLPSLSLRRNFPSSLI 111 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (863)
++++|||+||+|+||||+||++|+++|+ ++|++|+|||||++|+.. +.|..++.+....+
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~-----~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~----------- 83 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCN-----ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLL----------- 83 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTT-----------
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHH-----------
Confidence 4678999999999999999999999999 999999999999999863 44554442211111
Q ss_pred ccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCC-
Q 002941 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG- 190 (863)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~- 190 (863)
. .+++ ....+||.|+.|.+|+.+++.+ +.
T Consensus 84 -----------------~-~g~~-------------------------------~~~~~p~~~~~p~sp~~aa~~~-g~~ 113 (242)
T 3qxc_A 84 -----------------D-RSLT-------------------------------LKDISFYRYHKVSAPLIAQQEE-DPN 113 (242)
T ss_dssp -----------------C-TTCC-------------------------------HHHHCCEECSSSSCHHHHHHHH-CTT
T ss_pred -----------------h-CCCC-------------------------------hHHeeeEEECCCCChHHHHHHc-CCC
Confidence 0 0000 0226799999999999999999 87
Q ss_pred -CCChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHH
Q 002941 191 -VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (863)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (863)
.++.++|.+.+.++.+++ |++||||+||+++|+..+.+++|+|+.+++|||||++.++|++|++++
T Consensus 114 ~~i~~~~I~~~~~~l~~~~-------------D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~l 180 (242)
T 3qxc_A 114 APIDTDNLTQRLHNFTKTY-------------DLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLL 180 (242)
T ss_dssp CCCCHHHHHHHHHHGGGTC-------------SEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhcC-------------CEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHH
Confidence 789999999999987776 999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEcCCCCCC------HHHHHHhhc-CCCCeee
Q 002941 270 AYESLKLRGYDVVAVVFEDHGLVN------EVPLMSYLR-NRVPVLV 309 (863)
Q Consensus 270 ~~~~~~~~~~~v~gvi~n~~~~~~------~~~~~~~~~-~~~pvl~ 309 (863)
++++++++|++ .|||+|++..+. ..+|+++.. ...|++.
T Consensus 181 t~~~l~~~g~~-~GvIlN~v~~~~~~~~~~~p~le~~~~~~~~~~~~ 226 (242)
T 3qxc_A 181 NDFLLKSHQLD-YKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVI 226 (242)
T ss_dssp HHHHHHTSSSC-EEEEECCCTTCCHHHHHTHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHhCCCC-EEEEEeCCCCccchhhhhHHHHHHhcCcccCCcee
Confidence 99999999999 999999995543 334444432 1456665
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=286.21 Aligned_cols=209 Identities=19% Similarity=0.238 Sum_probs=166.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccch
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (863)
+|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+...++. +
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~-----~~G~~V~~~KPv~~g~~~~~~~---------~--------------- 53 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCE-----HQNIKSLCLKPVASGQSQFSEL---------C--------------- 53 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESBCSSSSS---------B---------------
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEecceeecCccCCCC---------C---------------
Confidence 4789999999999999999999999999 9999999999999997653321 0
Q ss_pred hhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChh
Q 002941 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (863)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~ 195 (863)
..+|+.. .+++.+.+ ....++|.|+.|.|||.+++.+ +..++.+
T Consensus 54 --~~~D~~~--~~~~~~~~-------------------------------~~~~~~~~~~~p~sp~~aa~~~-~~~i~~~ 97 (228)
T 3of5_A 54 --EDVESIL--NAYKHKFT-------------------------------AAEINLISFNQAVAPHIIAAKT-KVDISIE 97 (228)
T ss_dssp --HHHHHHH--HHTTTSSC-------------------------------HHHHCSEEESSSSCHHHHHHHT-TCCCCHH
T ss_pred --ChHHHHH--HhcCCCCC-------------------------------hhhEEEEEECCCCCHHHHHHHc-CCCCCHH
Confidence 0011111 11111111 1226799999999999999999 8888999
Q ss_pred HHHHHHHH-HHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 196 KVIETLGK-CLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 196 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
++.+.+.+ +.++| |++||||+||+++|+..+.+++|+|+.+++|||||++.++|++++++.+++.+
T Consensus 98 ~i~~~~~~~l~~~~-------------D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l 164 (228)
T 3of5_A 98 NLKQFIEDKYNQDL-------------DILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINEL 164 (228)
T ss_dssp HHHHHHHGGGGSSC-------------SEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-------------CEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHH
Confidence 99999988 66665 99999999999999988889999999999999999999999999999999999
Q ss_pred HhCCCcEEEEEEcCCCCC--CHHHHHHhhc--CCCCeee-cCCCCCCCchhhhhhhhh
Q 002941 275 KLRGYDVVAVVFEDHGLV--NEVPLMSYLR--NRVPVLV-LPPLPQDSSNDLMEWFDE 327 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~~--~~~~~~~~~~--~~~pvl~-~p~~~~~~~~~~~~~l~~ 327 (863)
+.+|+++.|||+|++..+ ......+.++ .++|||| || ...++..|++.
T Consensus 165 ~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvLG~iP-----~~~~~~~~~~~ 217 (228)
T 3of5_A 165 NRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKIS-----RNADYLDFIDL 217 (228)
T ss_dssp HHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCSEEEE-----SSCCHHHHHHH
T ss_pred HhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEEEECC-----CchHhhhhcCH
Confidence 999999999999998443 2233333332 4899999 99 22355666654
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=292.31 Aligned_cols=355 Identities=12% Similarity=0.052 Sum_probs=253.4
Q ss_pred ecccceEEEEcC--CCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC
Q 002941 382 RCGENFSVYQDQ--KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 382 ~~G~G~~v~D~d--G~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|+|+++||.+ |+ +|||+..+ ...++ .+|+|++|+.+++++..+.. .....+...++++.|.+..+.+
T Consensus 46 ~~g~g~~~~d~~~~g~----~~i~~~~~--~~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~l~~~l~~~~g~~ 116 (421)
T 3l8a_A 46 RLNQFTYKWKTSENNP----ELLQMWVA--DMDFL--PVPEIKEAIINYGREHIFGY-NYFNDDLYQAVIDWERKEHDYA 116 (421)
T ss_dssp CTTTTBTTTGGGTTCT----TCEECCSS--CCCSC--CCHHHHHHHHHHHHHCCSSC-BCCCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCCccccccCCCC----CeeecccC--CCCCC--CCHHHHHHHHHHHhcCCcCC-CCCCHHHHHHHHHHHHHHhCCC
Confidence 358999999999 77 89999654 33343 68999999999998743322 1223566777888888766511
Q ss_pred -CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcC
Q 002941 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (863)
Q Consensus 460 -~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~ 538 (863)
..++++|+++|+||++.|++.+.+ .| .+||+...+||+....+...+..
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~~---------~g------------d~Vi~~~~~y~~~~~~~~~~g~~--------- 166 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFSE---------KG------------DAVLINSPVYYPFARTIRLNDHR--------- 166 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSC---------TE------------EEEEEEESCCHHHHHHHHHTTEE---------
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcC---------CC------------CEEEECCCCcHHHHHHHHHCCCE---------
Confidence 146899999999999999998721 12 57999999999976544332110
Q ss_pred CcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 002941 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (863)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~ 618 (863)
+..+++... ...| ..| .+.+++.+.+ .
T Consensus 167 --------------------~~~~~~~~~----------------~~~~--~~d--------~~~le~~i~~-------~ 193 (421)
T 3l8a_A 167 --------------------LVENSLQII----------------NGRF--EID--------FEQLEKDIID-------N 193 (421)
T ss_dssp --------------------EEEEECEEE----------------TTEE--ECC--------HHHHHHHHHH-------T
T ss_pred --------------------EEecccccc----------------CCCe--eeC--------HHHHHHHhhc-------c
Confidence 001111000 0000 012 2456677742 3
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hh-----hhcCCCCcEEEeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-----DLLGCVPDIACYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~-----e~~gv~PDivt~sKgLg 692 (863)
++++|+++++ ++++| .+++++++++|+++|++||++||+||||++|+++|..+ .+ +..+..+++.+++|+++
T Consensus 194 ~~~~vil~~p-~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 271 (421)
T 3l8a_A 194 NVKIYLLCSP-HNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFN 271 (421)
T ss_dssp TEEEEEEESS-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHT
T ss_pred CCeEEEECCC-CCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhcc
Confidence 6788999987 99999 66788889999999999999999999999999998522 11 23456677889999998
Q ss_pred -CCCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 -gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+| +|+|+++++ +++++.+.... .+..++++|+++++++.++|+. .+++.+++.+..+.+++.+.+.+
T Consensus 272 ~~G-~~~G~~~~~~~~l~~~~~~~~-----~~~~~~~~n~~~~~a~~aal~~--~~~~~~~~~~~~~~~~~~l~~~L--- 340 (421)
T 3l8a_A 272 IAG-TKNSFAIIQNESLRRKFQYRQ-----LANNQHEVPTVGMIATQAAFQY--GKPWLEELKTVIEGNIKLVIKEL--- 340 (421)
T ss_dssp CGG-GCCEEEECCSHHHHHHHHHHH-----HHTTCSCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred Cch-hheEeEEcCCHHHHHHHHHHH-----HhcccCCCCHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHH---
Confidence 78 899999998 89998876421 1334568999999999999985 34566777777777777665443
Q ss_pred HhcCCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHH
Q 002941 771 ISSHRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 771 ~~~~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~ 841 (863)
+++|.+..+++.|.++. +++..... ....+.+.|++ +||++.++ .+.+|+.++ +++++|++
T Consensus 341 -~~~~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~ 410 (421)
T 3l8a_A 341 -EAKTKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE 410 (421)
T ss_dssp -HHHCSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH
T ss_pred -HhCCCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 33366777888888777 88864210 13457788875 59999873 388999866 68999999
Q ss_pred HHHHHHHHHH
Q 002941 842 LLLKLYQRLE 851 (863)
Q Consensus 842 ~v~~L~~~l~ 851 (863)
++++|.++++
T Consensus 411 ~l~~l~~~l~ 420 (421)
T 3l8a_A 411 ALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=284.76 Aligned_cols=343 Identities=12% Similarity=0.050 Sum_probs=252.2
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|++++| ||+ +|+|+.++ .++|++.+|+|.+|+.+++++++... ...+.++...+|+++|+++++
T Consensus 54 ~~g~~~~~-~g~----~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g-- 123 (427)
T 2w8t_A 54 KSPTEAVI-RGK----DTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG-- 123 (427)
T ss_dssp EETTEEEE-TTE----EEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT--
T ss_pred CCCceEee-CCc----eEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC--
Confidence 68899999 998 99999986 36884479999999999998865321 112246888999999999997
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.+.+++++||++|++.+++... ++ .+.|.+...+|++...++...+..
T Consensus 124 -~~~~i~~~sGs~a~~~al~~l~-----------~~-----------gd~vl~~~~~h~~~~~~~~~~g~~--------- 171 (427)
T 2w8t_A 124 -TTGAIVFSTGYMANLGIISTLA-----------GK-----------GEYVILDADSHASIYDGCQQGNAE--------- 171 (427)
T ss_dssp -CSEEEEESCHHHHHHHHHHHHS-----------CT-----------TCEEEEETTCCHHHHHHHHHSCSE---------
T ss_pred -CCceEEecCcHHHHHHHHHHhc-----------CC-----------CCEEEECCcccHHHHHHHHHcCCe---------
Confidence 4688999999999999988651 22 345666777888776655443210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+.+|. +| .+.+++.+++ ...++
T Consensus 172 ---------------------~~~~~~------------------------~d--------~~~le~~l~~----~~~~~ 194 (427)
T 2w8t_A 172 ---------------------IVRFRH------------------------NS--------VEDLDKRLGR----LPKEP 194 (427)
T ss_dssp ---------------------EEEECT------------------------TC--------HHHHHHHHHT----SCSSS
T ss_pred ---------------------eEEeCC------------------------CC--------HHHHHHHHHh----ccCCC
Confidence 011110 12 2456677753 11237
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccc--cccCCcchhhhcCCCCc----EEEeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPD----IACYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGf--GRtG~~~a~e~~gv~PD----ivt~sKgLgg 693 (863)
+++|++||+ +++.|.+.+ +++|+++|++||++||+||+|+++ +++|.+ ..+++++.|| +.+++|+++
T Consensus 195 ~~~v~~~~~-~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g- 267 (427)
T 2w8t_A 195 AKLVVLEGV-YSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG- 267 (427)
T ss_dssp CEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC-
T ss_pred CeEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEecchhhhc-
Confidence 899999998 999998876 999999999999999999999864 333443 5667888777 678999996
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+|.|++++++++++.+....+ .+.+|++.+|++++++.++|+.+++ +++.+++.++.+++.+.| .+.
T Consensus 268 --~~gG~v~~~~~l~~~l~~~~~----~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L----~~~-- 335 (427)
T 2w8t_A 268 --TVGGFVVSNHPKFEAVRLACR----PYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGL----KAM-- 335 (427)
T ss_dssp --SCCEEEEECCTTGGGGGGTCH----HHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH----HHH--
T ss_pred --cCCCEEEeCHHHHHHHHHhcc----cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHc--
Confidence 567899999999988875321 1345778999999999999999865 555666666666665544 332
Q ss_pred cCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------CEEEEecCCCCcHHHHHHHH
Q 002941 773 SHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 773 ~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------~~lr~~ppl~~t~eeid~~v 843 (863)
..+.+ ..+ .|.++.+.+.+. .....+.+.|+++||++.+.. +.+|+.++..++++++++++
T Consensus 336 g~~~~--~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~ 405 (427)
T 2w8t_A 336 GFRLG--TETCDSAIVAVMLEDQ--------EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVL 405 (427)
T ss_dssp TCEES--CSSCCSSEEEEEESSH--------HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHH
T ss_pred CCccc--CCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 22211 133 678888888532 236778999999999998752 58999999889999999999
Q ss_pred HHHHHHHHHHH
Q 002941 844 LKLYQRLEEFD 854 (863)
Q Consensus 844 ~~L~~~l~~l~ 854 (863)
++|+++++++.
T Consensus 406 ~~l~~~l~~~~ 416 (427)
T 2w8t_A 406 GMFQAAGRAVG 416 (427)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=264.04 Aligned_cols=346 Identities=12% Similarity=0.105 Sum_probs=246.5
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccC----CCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~p~~ 459 (863)
|+|.+++| +|+ +|+|+.++ +++|++.+|++.+++.++++++.+... ....++...+|.++|+++++.
T Consensus 33 ~~g~~v~~-~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~- 103 (399)
T 3tqx_A 33 PQNAEIKV-GEK----EVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT- 103 (399)
T ss_dssp CSSSEEEE-TTE----EEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-
T ss_pred CCCceEee-CCe----eEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-
Confidence 78899999 888 99999986 678843899999999999998764321 122456789999999999873
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..++++||++|++.+++... ++ .+.|.+...+|+....++...+..
T Consensus 104 --~~~i~~~sGt~a~~~~l~~~~-----------~~-----------gd~v~~~~~~~~~~~~~~~~~g~~--------- 150 (399)
T 3tqx_A 104 --DDTILYSSCFDANGGLFETLL-----------GP-----------EDAIISDELNHASIIDGIRLCKAQ--------- 150 (399)
T ss_dssp --SEEEEESCHHHHHHTTHHHHC-----------CT-----------TCEEEEETTCCHHHHHHHHSCCSE---------
T ss_pred --CcEEEECchHHHHHHHHHHhc-----------CC-----------CCEEEECCcccHHHHHHHHHcCCc---------
Confidence 568888899999999887652 21 345566677777766555443210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+.+|. .|. +.+++.+++. ...+.+
T Consensus 151 ---------------------~~~~~~------------------------~d~--------~~l~~~l~~~--~~~~~~ 175 (399)
T 3tqx_A 151 ---------------------RYRYKN------------------------NAM--------GDLEAKLKEA--DEKGAR 175 (399)
T ss_dssp ---------------------EEEECT------------------------TCT--------THHHHHHHHH--HTTTCS
T ss_pred ---------------------eeEeCC------------------------CCH--------HHHHHHHHhh--hccCCC
Confidence 011110 011 1233444320 011236
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccc-cccCCcchhhhcCC--CCcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv--~PDiv--t~sKgLgg 693 (863)
+++|+++++ ++..|.+.+ +++|.++|++||+++|+||+| .|+ ++.|. +..+.+++ .+|++ +++|+++
T Consensus 176 ~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~di~~~s~sK~~~- 248 (399)
T 3tqx_A 176 FKLIATDGV-FSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR-GTPEYCGVADRVDILTGTLGKALG- 248 (399)
T ss_dssp SEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-CHHHHHTCTTCCSEEEEESSSSSC-
T ss_pred ceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-chHHhhCCCCCCcEEEecchHhcc-
Confidence 889999997 999998876 999999999999999999999 454 44444 35677777 78998 8899999
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +|.|++++++++++.+..... .+.++.+.++++++++.++++.+. +..+++.+..+..++.+.+.+.+. .
T Consensus 249 g-~~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~L~~~--g 319 (399)
T 3tqx_A 249 G-ASGGYTSGHKEIIEWLRNRSR----PYLFSNTVAPVIVATSLKVLELLK--TEGPQLRKQLQENSRYFRAGMEKL--G 319 (399)
T ss_dssp S-SCCEEEEECHHHHHHHHHHCH----HHHSSCCCCHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred c-CceEEEEcCHHHHHHHHHhCc----ceeccCCCcHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHc--C
Confidence 5 688999999999998864211 123455789999999999999873 122334444444444444443333 2
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.+ .+.+.|.++.+.+... .....+.+.|.++||++.+. + +.+|+.++..++++++++++++
T Consensus 320 ~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 388 (399)
T 3tqx_A 320 FQ---LVPGNHPIIPVMLGDA--------QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEA 388 (399)
T ss_dssp CC---BCCCSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CC---cCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHH
Confidence 22 2367888988888643 14678899999999999853 2 5899999889999999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
|+++++++
T Consensus 389 l~~~~~~~ 396 (399)
T 3tqx_A 389 FGQVGKKL 396 (399)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998765
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=273.62 Aligned_cols=337 Identities=11% Similarity=0.006 Sum_probs=244.1
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
+.+.+++|.+|+ +|+|+++ +.++|+..||+|++|+.+++++++... .....++...+|+++|+++++
T Consensus 48 ~~~~~~~~~~g~----~~ld~~s---~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 118 (409)
T 3kki_A 48 GKHLVLGKQASP----DDIILQS---NDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG-- 118 (409)
T ss_dssp SSCTTCCCCCCT----TSEECCC---SCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--
T ss_pred CCeeeeCCCCCC----ceEEeec---cCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--
Confidence 556778888998 9999987 456676678999999999999864321 111234667789999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.+.+++++||++|++.|++... ++ .+.|.++..+|+.+..++...+..
T Consensus 119 -~~~~i~~~sGt~a~~~~l~~~~-----------~~-----------gd~Vl~~~~~~~~~~~~~~~~g~~--------- 166 (409)
T 3kki_A 119 -FDECLLSQSGWNANVGLLQTIC-----------QP-----------NTNVYIDFFAHMSLWEGARYANAQ--------- 166 (409)
T ss_dssp -CSEEEEESCHHHHHHHHHHHHC-----------CT-----------TCEEEEETTSCHHHHHHHHHTTCE---------
T ss_pred -CCeEEEecchHHHHHHHHHHhc-----------CC-----------CCEEEECCCcCHHHHHHHHHcCCe---------
Confidence 3578888999999999998652 21 345667777888777665543211
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+++|. .| .+.+++.+.+ .+
T Consensus 167 ---------------------~~~~~~------------------------~d--------~~~le~~l~~-------~~ 186 (409)
T 3kki_A 167 ---------------------AHPFMH------------------------NN--------CDHLRMLIQR-------HG 186 (409)
T ss_dssp ---------------------EEEECT------------------------TC--------HHHHHHHHHH-------HC
T ss_pred ---------------------EEEecC------------------------CC--------HHHHHHHHHh-------cC
Confidence 001110 11 2456666653 12
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc--ccccCCcchhhhcCC--CCcE--EEeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGC--VPDI--ACYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv--~PDi--vt~sKgLgg 693 (863)
.++|+++++ ++++|.+.+ +++|+++|++||++||+||+|++ +|++|..+. +.+++ .+|+ .+++|++++
T Consensus 187 ~~~vi~~~~-~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~ 260 (409)
T 3kki_A 187 PGIIVVDSI-YSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAY 260 (409)
T ss_dssp SCEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCS
T ss_pred CeEEEECCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCC
Confidence 479999998 999998776 99999999999999999999998 888887666 56677 5777 578999986
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
| .|++++++++++.+..... ...++...+|+++++++++++.+++ +++.+++.++.+++.+.| .
T Consensus 261 ~---gg~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L--------~ 325 (409)
T 3kki_A 261 R---AGAIWCNNEVNRCVPFISY----PAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGL--------S 325 (409)
T ss_dssp S---CEEEEESSSGGGTHHHHCH----HHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--------H
T ss_pred C---ceEEEECHHHHHHHHHhCc----CccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--------H
Confidence 6 5889999998887764211 1223444789999999999998854 344445555444444422 2
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
+.+. .+.+.|.++.+.+.... .+..+.+.|+++||++.+. .+.+|+.++..+++++|+++++
T Consensus 326 ~~g~--~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~ 395 (409)
T 3kki_A 326 QLGL--TIRSESQIIGLETGDER--------NTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIE 395 (409)
T ss_dssp TTTC--CCCCSSSEEEEEEESHH--------HHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred HcCC--ccCCCCCEEEEEeCCHH--------HHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHH
Confidence 2221 23468889999886431 3567899999999999752 2689999999999999999999
Q ss_pred HHHHHHHH
Q 002941 845 KLYQRLEE 852 (863)
Q Consensus 845 ~L~~~l~~ 852 (863)
+|+++++.
T Consensus 396 ~l~~~l~~ 403 (409)
T 3kki_A 396 VCSDAVNY 403 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998865
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=260.19 Aligned_cols=345 Identities=14% Similarity=0.111 Sum_probs=243.6
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC-CC---CChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP-EN---VYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~-~~---~~~~~~eLae~L~~~~p~~ 459 (863)
|+|++++|.+|+ +|+|+.++ +++|++.+|++.+|+.+++++++..... .+ .++...+|.++|+++++.
T Consensus 34 ~~g~~~~~~~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~- 105 (401)
T 1fc4_A 34 AQQADITVADGS----HVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM- 105 (401)
T ss_dssp CSSSEEEBTTSC----EEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC-
T ss_pred CCCceEEeeCCc----cEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC-
Confidence 788999999999 99999987 4688646899999999999886543210 11 256788999999999973
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
+..++++||++|++.+++.+. ++ .+.|.+...+|+.+..++...+.
T Consensus 106 --~~~i~~~sGs~a~~~~~~~~~-----------~~-----------gd~v~~~~~~~~~~~~~~~~~g~---------- 151 (401)
T 1fc4_A 106 --EDAILYSSCFDANGGLFETLL-----------GA-----------EDAIISDALNHASIIDGVRLCKA---------- 151 (401)
T ss_dssp --SEEEEESCHHHHHHTTHHHHC-----------CT-----------TCEEEEETTCCHHHHHHHHTSCS----------
T ss_pred --CcEEEeCChHHHHHHHHHHHc-----------CC-----------CCEEEEcchhHHHHHHHHHHcCC----------
Confidence 467788999999999888651 21 33556666778766554432210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
..+.+|. .| .+.+++.+++. .....+
T Consensus 152 --------------------~~~~~~~------------------------~d--------~~~l~~~l~~~--~~~~~~ 177 (401)
T 1fc4_A 152 --------------------KRYRYAN------------------------ND--------MQELEARLKEA--REAGAR 177 (401)
T ss_dssp --------------------EEEEECT------------------------TC--------HHHHHHHHHHH--HHTTCS
T ss_pred --------------------ceEEECC------------------------CC--------HHHHHHHHHHh--hccCCC
Confidence 0011110 11 13344555320 000115
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccc-cccCCcchhhhcCCCC--cEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGCVP--DIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv~P--Div--t~sKgLgg 693 (863)
+++|++++. ++..|.+.+ +++|.++|++||+++|+||++ +|+ +++|..+ .+.+++.| |++ +++|+++|
T Consensus 178 ~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~ 251 (401)
T 1fc4_A 178 HVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITGTLGKALGG 251 (401)
T ss_dssp SEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTCS
T ss_pred ceEEEEeCC-cCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEecchhhccC
Confidence 788999997 999998876 999999999999999999999 488 3566653 45566654 887 88999977
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+. .|++++++++++.+.... ..+.++++.++++++++.++|+.+++ +++.+++.++.+++.+ .+.+.
T Consensus 252 ~~--gG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~----~L~~~-- 319 (401)
T 1fc4_A 252 AS--GGYTAARKEVVEWLRQRS----RPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFRE----QMSAA-- 319 (401)
T ss_dssp SS--CEEEEECHHHHHHHHHHC----HHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HHHHT--
T ss_pred CC--CEEEEcCHHHHHHHHHhC----cCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHc--
Confidence 63 688999999998876421 01334778899999999999998753 3444555554444444 33322
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------CEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------~~lr~~ppl~~t~eeid~~v~ 844 (863)
..+. +.+.|.++.+++.+. .....+.+.|.++||++.+.. +.+|+.++..+++++++++++
T Consensus 320 g~~~---~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 388 (401)
T 1fc4_A 320 GFTL---AGADHAIIPVMLGDA--------VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVE 388 (401)
T ss_dssp TCCB---CCSSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcc---cCCCCCEEEEEcCCh--------HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 2222 246788998888531 135678899999999998742 479999888899999999999
Q ss_pred HHHHHHHHH
Q 002941 845 KLYQRLEEF 853 (863)
Q Consensus 845 ~L~~~l~~l 853 (863)
+|+++++++
T Consensus 389 ~l~~~~~~~ 397 (401)
T 1fc4_A 389 AFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988765
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=243.38 Aligned_cols=342 Identities=13% Similarity=0.118 Sum_probs=238.4
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.+++ .+|+ .|+|+.++.. +|+..+|.+.+|+.+++++..+.. ...+..+...+++++|++..+
T Consensus 33 ~~g~~~~-~~g~----~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 102 (398)
T 3a2b_A 33 KQDTEVK-IDGR----RVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG-- 102 (398)
T ss_dssp CSSSEEE-ETTE----EEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--
T ss_pred CCCceEE-ECCc----eEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--
Confidence 7889999 8888 9999998633 676468999999999998754321 122346778899999999987
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.++++|++||++|++.+++.+. ++ .+.|.....+|+.+..++...|..
T Consensus 103 -~~~v~~~~ggt~a~~~~~~~~~-----------~~-----------gd~V~~~~p~~~~~~~~~~~~g~~--------- 150 (398)
T 3a2b_A 103 -KEAAILFSTGFQSNLGPLSCLM-----------GR-----------NDYILLDERDHASIIDGSRLSFSK--------- 150 (398)
T ss_dssp -CSEEEEESSHHHHHHHHHHHSS-----------CT-----------TCEEEEETTCCHHHHHHHHHSSSE---------
T ss_pred -CCcEEEECCHHHHHHHHHHHHh-----------CC-----------CCEEEECCccCHHHHHHHHHcCCc---------
Confidence 3689999999999999998762 11 234555566777766555442210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
.+.+|. .| .+.+++.+.+ ...++
T Consensus 151 ---------------------~~~v~~------------------------~d--------~~~l~~~l~~----~~~~~ 173 (398)
T 3a2b_A 151 ---------------------VIKYGH------------------------NN--------MEDLRAKLSR----LPEDS 173 (398)
T ss_dssp ---------------------EEEECT------------------------TC--------HHHHHHHHHT----SCSSS
T ss_pred ---------------------eEEeCC------------------------CC--------HHHHHHHHHh----hccCC
Confidence 011110 11 2446666653 11126
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-c-ccccCCcchhhhcCCC--CcEE--EeccccCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCV--PDIA--CYGKLLTG 693 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv~--PDiv--t~sKgLgg 693 (863)
+.+|+++++ ++..|.+.+ +++|.++|++||+++|+||++. | ++++|..+ .+.+++. +|++ +++|.++.
T Consensus 174 ~~~v~~~~~-~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~ 247 (398)
T 3a2b_A 174 AKLICTDGI-FSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLAS 247 (398)
T ss_dssp CEEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCS
T ss_pred ceEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcCCeEEEecccccccC
Confidence 789999997 999998775 8999999999999999999995 3 34555433 4556664 6888 88999972
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+.|++++++++++.+.... ..+..++..+|+.++++.++|+.++. .+++.+..+..++.+.+.+.+. .
T Consensus 248 ---~GG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~--g 315 (398)
T 3a2b_A 248 ---LGGFVAGDADVIDFLKHNA----RSVMFSASMTPASVASTLKALEIIQN---EPEHIEKLWKNTDYAKAQLLDH--G 315 (398)
T ss_dssp ---SCEEEEECHHHHHHHHHHC----HHHHSSBCCCHHHHHHHHHHHHHHHH---CTHHHHHHHHHHHHHHHHHHHT--T
T ss_pred ---CCcEEEeCHHHHHHHHHhc----ccceecCCCCHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHhc--C
Confidence 1267899999998876411 12455667788888888889987632 2233333344444443343332 2
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.+ -+++.|.++.+.+... .....+.+.|+++||++.+. .+.+|+.++..++++++++++++
T Consensus 316 ~~---~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~ 384 (398)
T 3a2b_A 316 FD---LGATESPILPIFIRSN--------EKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEK 384 (398)
T ss_dssp CC---BCSCCSSEEEEECCCH--------HHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHH
T ss_pred CC---cCCCCCCEEEEEcCCH--------HHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHH
Confidence 22 2345688888887531 13567899999999999875 26899998887899999999999
Q ss_pred HHHHHHHH
Q 002941 846 LYQRLEEF 853 (863)
Q Consensus 846 L~~~l~~l 853 (863)
|.++++++
T Consensus 385 l~~~l~~~ 392 (398)
T 3a2b_A 385 MVKVFKQA 392 (398)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998765
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=242.20 Aligned_cols=339 Identities=15% Similarity=0.081 Sum_probs=237.4
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.+++ .+|+ +|+|+.++. ++|+..+|++.+|+.+++++++... .....++...+|.++|+++++
T Consensus 29 ~~g~~~~-~~g~----~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 98 (384)
T 1bs0_A 29 GAGRWLV-ADDR----QYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG-- 98 (384)
T ss_dssp CSSSEEE-ETTE----EEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--
T ss_pred CCCceEE-ECCc----eEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--
Confidence 7889999 6888 999999863 3773378999999999998854311 111345788999999999997
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.+.+++++||++|+..+++... ++ .++|.+...+|+.+..++...|..
T Consensus 99 -~~~~i~~~sGt~a~~~~~~~~~-----------~~-----------gd~v~~~~~~~~~~~~~~~~~g~~--------- 146 (384)
T 1bs0_A 99 -YSRALLFISGFAANQAVIAAMM-----------AK-----------EDRIAADRLSHASLLEAASLSPSQ--------- 146 (384)
T ss_dssp -CSEEEEESCHHHHHHHHHHHHC-----------CT-----------TCEEEEETTCCHHHHHHHHTSSSE---------
T ss_pred -CCcEEEeCCcHHHHHHHHHHhC-----------CC-----------CcEEEEcccccHHHHHHHHHcCCC---------
Confidence 3578899999999999987651 21 346677788888776655442210
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+ +.+|. .| .+.+++.+++ ..+.
T Consensus 147 -------------------~--~~~~~------------------------~d--------~~~l~~~l~~-----~~~~ 168 (384)
T 1bs0_A 147 -------------------L--RRFAH------------------------ND--------VTHLARLLAS-----PCPG 168 (384)
T ss_dssp -------------------E--EEECT------------------------TC--------HHHHHHHHHS-----CCSS
T ss_pred -------------------E--EEeCC------------------------CC--------HHHHHHHHHh-----cCCC
Confidence 0 11110 11 2346666653 1223
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cc-cccCCcchhhhcCCCCcEE--EeccccCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCVPDIA--CYGKLLTGGV 695 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv~PDiv--t~sKgLggG~ 695 (863)
.++|+++++ ++..|.+.+ +++|.++|++||+++|+||++. |+ +++|..+. +.++..||++ +++|.++
T Consensus 169 ~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s~sK~~~--- 239 (384)
T 1bs0_A 169 QQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFG--- 239 (384)
T ss_dssp CEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEESSSTTS---
T ss_pred CeEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEeeccchhh---
Confidence 688999987 999998886 8999999999999999999994 43 45555433 5677789988 8899987
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.|.|++++++++++.+.... ..+.++++.++++++++.++|+.+++. +.+++.+..+..++.+.+ .+.+.+
T Consensus 240 ~~GG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~l~~----~L~~~g 310 (384)
T 1bs0_A 240 VSGAAVLCSSTVADYLLQFA----RHLIYSTSMPPAQAQALRASLAVIRSD-EGDARREKLAALITRFRA----GVQDLP 310 (384)
T ss_dssp SCCEEEEECHHHHHHHHHHC----HHHHSSBCCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHH----HHTTSS
T ss_pred ccCcEEEeCHHHHHHHHHhc----hhhhcCCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHH----HHHhcC
Confidence 35588999999998876421 123345578999999999999987642 223334444444443332 333343
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
. .-..+.|.++.+.+... .....+.+.|.++||++.+.. +.+|+.++..++++++++++++|+
T Consensus 311 ~-~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~ 381 (384)
T 1bs0_A 311 F-TLADSCSAIQPLIVGDN--------SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLH 381 (384)
T ss_dssp C-EECSCCSSBCCEEEESH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHH
T ss_pred C-cccCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 2 21236677777777521 135678999999999998742 679998888889999999999987
Q ss_pred HH
Q 002941 848 QR 849 (863)
Q Consensus 848 ~~ 849 (863)
++
T Consensus 382 ~~ 383 (384)
T 1bs0_A 382 GN 383 (384)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=246.80 Aligned_cols=355 Identities=11% Similarity=0.015 Sum_probs=242.0
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC--CCC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGW 460 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p--~~~ 460 (863)
+|+|+++||.+|+ +|+|+..| ...++ .+|+|.+|+.+++++..+... ....+...++++.+.+..+ ..
T Consensus 15 ~~~g~~~~d~~g~----~~i~~~~~--~~~~~--~~~~v~~a~~~~~~~~~~~y~-~~~~~l~~~la~~l~~~~g~~~~- 84 (391)
T 3dzz_A 15 RQGNSIKWGVLKE----KELPMWIA--EMDFK--IAPEIMASMEEKLKVAAFGYE-SVPAEYYKAVADWEEIEHRARPK- 84 (391)
T ss_dssp CCTTBTTTTTCCT----TCEECCSS--CCSSC--CCHHHHHHHHHHHTTCCCCCB-CCCHHHHHHHHHHHHHHHSCCCC-
T ss_pred CCCCccceeccCC----Cceecccc--CCCCC--CCHHHHHHHHHHHhcCcCCCC-CCCHHHHHHHHHHHHHHhCCCCC-
Confidence 4899999999999 89999875 33444 689999999999987433211 1234556777888877654 22
Q ss_pred CCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCc
Q 002941 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (863)
Q Consensus 461 ~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~ 540 (863)
.+.++|+++|++|++.+++...+ .| .+|++...+||+....+...+..
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~----------- 132 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTS---------PG------------DQILVQEPVYNMFYSVIEGNGRR----------- 132 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSC---------TT------------CEEEECSSCCHHHHHHHHHTTCE-----------
T ss_pred HHHEEECCCHHHHHHHHHHHhCC---------CC------------CeEEECCCCcHHHHHHHHHcCCE-----------
Confidence 46899999999999999987621 12 57999999999865544322110
Q ss_pred ccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 002941 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (863)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~i 620 (863)
.+.+|..+ . ...| ..| .+.+++.+.+ .++
T Consensus 133 --------------------~~~~~~~~------------~--~~~~--~~d--------~~~l~~~l~~-------~~~ 161 (391)
T 3dzz_A 133 --------------------VISSDLIY------------E--NSKY--SVN--------WADLEEKLAT-------PSV 161 (391)
T ss_dssp --------------------EEECCCEE------------E--TTEE--ECC--------HHHHHHHHTS-------TTE
T ss_pred --------------------EEEeeeee------------c--CCce--eec--------HHHHHHHHhc-------cCc
Confidence 01111000 0 0000 011 2456666642 345
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCC-CCc----EEEeccccC-C
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPD----IACYGKLLT-G 693 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv-~PD----ivt~sKgLg-g 693 (863)
.+|+++.. ++.+|.+. +++.+++|.++|++||++||+||+|++|++.|. ......++. .|| +.+++|+++ +
T Consensus 162 ~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~ 239 (391)
T 3dzz_A 162 RMMVFCNP-HNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLA 239 (391)
T ss_dssp EEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCT
T ss_pred eEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcccc
Confidence 66666665 89999655 677799999999999999999999999988885 444544443 378 446799997 7
Q ss_pred CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 694 GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 694 G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
| +++|+++++ +++++.+.... .+..+++.++++++++.++|+.. +++.+++.+..+..++.+.+. +.
T Consensus 240 G-~r~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~----l~ 307 (391)
T 3dzz_A 240 A-LHAACAIIPNPDLRARAEESF-----FLAGIGEPNLLAIPAAIAAYEEG--HDWLRELKQVLRDNFAYAREF----LA 307 (391)
T ss_dssp T-TCCEEEECCSHHHHHHHHHHH-----HHHTCSSCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred c-hhheEEEECCHHHHHHHHHHH-----HhhccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHH----HH
Confidence 7 899999997 99988876411 12456788999999999999863 344555566555666555443 33
Q ss_pred c-CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecC-------CEEEEecCCCCcHHHHHHH
Q 002941 773 S-HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-------NVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 773 ~-~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g-------~~lr~~ppl~~t~eeid~~ 842 (863)
+ .|.+..+...| .++.+.+.... .....+.+.|+ ++||+++++. +.+|+.+. +++++++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~ 378 (391)
T 3dzz_A 308 KEVPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDG 378 (391)
T ss_dssp HHCTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHH
T ss_pred hhCCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHH
Confidence 3 45444444444 44457775421 02567888886 8999998732 78999755 799999999
Q ss_pred HHHHHHHHHHH
Q 002941 843 LLKLYQRLEEF 853 (863)
Q Consensus 843 v~~L~~~l~~l 853 (863)
+++|.++++++
T Consensus 379 l~~l~~~l~~~ 389 (391)
T 3dzz_A 379 MQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988654
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=248.35 Aligned_cols=348 Identities=12% Similarity=0.041 Sum_probs=236.9
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WA 461 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~ 461 (863)
+|+|+++||.+|+ +|+|+.+|. ..++ .+|+|.+|+.+++++..+...... .+...++++.+.+..+.. ..
T Consensus 11 ~~~g~~~~d~~g~----~~idl~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~ 81 (377)
T 3fdb_A 11 RARNTMKWTRYGQ----GVLPLWVAE--SDFS--TCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARP 81 (377)
T ss_dssp HHTCCHHHHSSCT----TSEECCSSC--CCSC--CCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCG
T ss_pred cCCCCceeeccCC----CeeeecccC--CCCC--CCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCH
Confidence 5889999999999 999998763 4454 689999999999987322211122 556666777766543311 14
Q ss_pred CeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcc
Q 002941 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (863)
Q Consensus 462 ~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~ 541 (863)
++++|+++|++|++.+++...+ .| .+|++...+||+....+...+..
T Consensus 82 ~~i~~t~g~~~a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~------------ 128 (377)
T 3fdb_A 82 EWIFPIPDVVRGLYIAIDHFTP---------AQ------------SKVIVPTPAYPPFFHLLSATQRE------------ 128 (377)
T ss_dssp GGEEEESCHHHHHHHHHHHHSC---------TT------------CCEEEEESCCTHHHHHHHHHTCC------------
T ss_pred HHEEEeCChHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHhHHHHHHHcCCE------------
Confidence 6899999999999999987621 12 56999999999975443332110
Q ss_pred cCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 002941 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (863)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA 621 (863)
+..++... ..| .+.+++.+.+ +..+
T Consensus 129 -----------------~~~~~~~~-----------------------~~d--------~~~l~~~l~~-------~~~~ 153 (377)
T 3fdb_A 129 -----------------GIFIDATG-----------------------GIN--------LHDVEKGFQA-------GARS 153 (377)
T ss_dssp -----------------EEEEECTT-----------------------SCC--------HHHHHHHHHT-------TCCE
T ss_pred -----------------EEEccCCC-----------------------CCC--------HHHHHHHhcc-------CCCE
Confidence 00111110 011 2456667753 2346
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-C----cchhhhcCCCCcEEEeccccC-CCC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-V----ETTADLLGCVPDIACYGKLLT-GGV 695 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~----~~a~e~~gv~PDivt~sKgLg-gG~ 695 (863)
.+++.| ++..|.+. |.+.+++|.++|++||+++|+||+|++|++.| . .......+..+++.+++|++| +|
T Consensus 154 v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G- 229 (377)
T 3fdb_A 154 ILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAG- 229 (377)
T ss_dssp EEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGG-
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcc-
Confidence 666677 78888655 67779999999999999999999999998887 2 333333444456678899996 67
Q ss_pred CCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 696 ~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+++|++++ ++++++.+... .+..+++.++++++++.++|+.. +++.++..+..+..++.+.+.+.+. .
T Consensus 230 ~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~---~ 298 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHWQQL------SPVIKDGASTLGLIAAEAAYRYG--TDFLNQEVAYLKNNHDFLLHEIPKR---I 298 (377)
T ss_dssp GCCEEEECCSHHHHHHHHHS------CHHHHCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHH---S
T ss_pred hhheEEEeCCHHHHHHHHHH------HHhhcCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhh---C
Confidence 89997665 88998888642 34567889999999999999853 3445566666666666554443322 4
Q ss_pred CCeeEecccceEE-EEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLC-AIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 775 p~v~~vrg~Gl~~-~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|.+..+...|.++ .+++..... ..+++..|+++ ||++.|. .+.+|+.+. .+++++++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~ 368 (377)
T 3fdb_A 299 PGAKITPMQATYLMWIDFRDTTI--------EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDR 368 (377)
T ss_dssp TTCEECCCSBCSEEEEECTTSCC--------CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHH
T ss_pred CCceEecCCeeEEEEEECcccCC--------CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHH
Confidence 5444455555444 577764320 12356667765 9999874 378999755 489999999999
Q ss_pred HHHHHHH
Q 002941 846 LYQRLEE 852 (863)
Q Consensus 846 L~~~l~~ 852 (863)
|.+++++
T Consensus 369 l~~~l~~ 375 (377)
T 3fdb_A 369 MAKAVSH 375 (377)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9988754
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=236.67 Aligned_cols=356 Identities=11% Similarity=-0.013 Sum_probs=231.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc----ccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH----VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~----~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeA 473 (863)
.++|+.+|.. .+| .+|.|.+|+.+++++... +....+..+...++++.+.+..+.+ ..+ +++|+++|++|
T Consensus 38 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH--APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp CCEECCSSSC--SSC--CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CEEEecCCCC--CCC--CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 6889887754 456 479999999999976311 1111112334455555555444421 136 89999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+++.+.+ .| .+|++...+|||....+... |..
T Consensus 114 ~~~~~~~~~~---------~g------------d~Vl~~~p~y~~~~~~~~~~-g~~----------------------- 148 (429)
T 1yiz_A 114 LYATIQGHVD---------EG------------DEVIIIEPFFDCYEPMVKAA-GGI----------------------- 148 (429)
T ss_dssp HHHHHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHT-TCE-----------------------
T ss_pred HHHHHHHhcC---------CC------------CEEEEcCCCchhHHHHHHHc-CCE-----------------------
Confidence 9999997621 12 57999999999975443221 100
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+..++...... .... ...+...| .+.+++.+. .++++|++++. ++..
T Consensus 149 -----~~~~~~~~~~~-------~~~~----~~~~~~~d--------~~~l~~~l~--------~~~~~v~~~~p-~npt 195 (429)
T 1yiz_A 149 -----PRFIPLKPNKT-------GGTI----SSADWVLD--------NNELEALFN--------EKTKMIIINTP-HNPL 195 (429)
T ss_dssp -----EEEEECBCCCS-------SSSE----EGGGCBCC--------HHHHHHHCC--------TTEEEEEEESS-CTTT
T ss_pred -----EEEEeCCcccc-------cccc----cccCcccC--------HHHHHHHhc--------cCceEEEECCC-CCCC
Confidence 00011100000 0000 00000011 244555552 35778888886 8999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhh----hcCCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTAD----LLGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e----~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
|.+. |++++++|.++|++||++||+||++++|++.|.. ..+. .++..+++.+++|+++ +| +|+|++++++++
T Consensus 196 G~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~ 273 (429)
T 1yiz_A 196 GKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEAL 273 (429)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHHH
T ss_pred CccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHHH
Confidence 9664 7889999999999999999999999999877752 1221 3445566778999998 78 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHH-----hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-----FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-----l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
++.+.. ..+..+++.++++++++.++|+. ...+++.+++++..++.++.+.+.+.+. +.......
T Consensus 274 ~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 343 (429)
T 1yiz_A 274 LKNLQM------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV----GMNPTVPQ 343 (429)
T ss_dssp HHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH----TCEEEECS
T ss_pred HHHHHH------HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCC
Confidence 988764 13456889999999999999987 4335566777777777777665554432 32212233
Q ss_pred cceEEEEEEccCCcCC----CCchHHHHHHHHHHH-HCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNA----GYGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~----~~~~~~~~~l~~~l~-e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
.|+++.+++.....+. .........+++.|+ ++||++.|. ++.+|+.++ .++++|++++++
T Consensus 344 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~ 421 (429)
T 1yiz_A 344 GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEI 421 (429)
T ss_dssp BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHH
T ss_pred cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHH
Confidence 4788888886431000 000013456788776 799999863 468999876 489999999999
Q ss_pred HHHHHH
Q 002941 846 LYQRLE 851 (863)
Q Consensus 846 L~~~l~ 851 (863)
|.++++
T Consensus 422 l~~~l~ 427 (429)
T 1yiz_A 422 LRKWKG 427 (429)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 987653
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=237.55 Aligned_cols=360 Identities=11% Similarity=-0.012 Sum_probs=234.1
Q ss_pred ecccceEEEEcCCCcc-c--ceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC-
Q 002941 382 RCGENFSVYQDQKNKF-I--GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG- 457 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~-~--~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p- 457 (863)
++|+|+++||.+|++| . ++++|+.++. ..++ .+|.|.+|+.+++++..... .....+...++++.+.+..+
T Consensus 11 ~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~ 85 (399)
T 1c7n_A 11 RKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK--NPPELIEGLKKYLDETVLGY-TGPTEEYKKTVKKWMKDRHQW 85 (399)
T ss_dssp CTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC--CCHHHHHHHHHHHHHCCCSS-BCCCHHHHHHHHHHHHHHHCC
T ss_pred ccCCCccccccchhhccccCCCceeeeecC--CCCC--CCHHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHHHhCC
Confidence 3589999999988522 1 2788987654 3455 47999999999987532211 11122334444444444334
Q ss_pred -CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCC
Q 002941 458 -KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFL 536 (863)
Q Consensus 458 -~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~ 536 (863)
.+ .+.++|+++|++|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 86 ~~~-~~~v~~t~g~~~a~~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~-~------ 136 (399)
T 1c7n_A 86 DIQ-TDWIINTAGVVPAVFNAVREFTK---------PG------------DGVIIITPVYYPFFMAIKNQER-K------ 136 (399)
T ss_dssp CCC-GGGEEEESSHHHHHHHHHHHHCC---------TT------------CEEEECSSCCTHHHHHHHTTTC-E------
T ss_pred CCC-hhhEEEcCCHHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHhHHHHHHHcCC-E------
Confidence 22 46899999999999999986620 11 5799999999997654432210 0
Q ss_pred cCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCC
Q 002941 537 QQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616 (863)
Q Consensus 537 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~ 616 (863)
+..++.... ...| ..| .+.+++.+.+
T Consensus 137 ----------------------~~~~~~~~~----------------~g~~--~~d--------~~~l~~~l~~------ 162 (399)
T 1c7n_A 137 ----------------------IIECELLEK----------------DGYY--TID--------FQKLEKLSKD------ 162 (399)
T ss_dssp ----------------------EEECCCEEE----------------TTEE--ECC--------HHHHHHHHTC------
T ss_pred ----------------------EEecccccC----------------CCCE--EEc--------HHHHHHHhcc------
Confidence 000111000 0000 011 2456666642
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-----CCCCcEEEeccc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-----GCVPDIACYGKL 690 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-----gv~PDivt~sKg 690 (863)
.++.+|++... ++..|.+ +|++++++|.++|++||++||+||+|++|++.|. ......+ +...++.+++|.
T Consensus 163 -~~~~~v~~~~~-~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~ 239 (399)
T 1c7n_A 163 -KNNKALLFCSP-HNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKT 239 (399)
T ss_dssp -TTEEEEEEESS-BTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHH
T ss_pred -CCCcEEEEcCC-CCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhh
Confidence 24556665544 7888865 5788999999999999999999999999987774 2223222 223344578999
Q ss_pred cC-CCCCCceeeecc-HHHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH
Q 002941 691 LT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 691 Lg-gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
++ +| +++|+++++ +++++.+... ...+++ +.++++++++.++|+.. +++.+++.+..+..++.+.+.
T Consensus 240 ~~~~G-~r~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~- 309 (399)
T 1c7n_A 240 FNIAG-MGMSNIIIKNPDIRERFTKS------RDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVIDKNQRIVKDF- 309 (399)
T ss_dssp HTCGG-GCCEEEECCCHHHHHHHHHH------HHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccc-hheEEEEECCHHHHHHHHHH------HhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHH-
Confidence 98 78 899999996 6788887641 233444 57999999999999853 445666666666666655443
Q ss_pred HHHHhc-CCCeeEecccceEE-EEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHH
Q 002941 768 IQQISS-HRTVQRVVALGTLC-AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPE 837 (863)
Q Consensus 768 ~~~~~~-~p~v~~vrg~Gl~~-~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~e 837 (863)
+++ .|.+..+++.|.++ .+++.... .....+...|+ ++||++.|. .+.+|+.++. +++
T Consensus 310 ---L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~ 377 (399)
T 1c7n_A 310 ---FEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--PSS 377 (399)
T ss_dssp ---HHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--CHH
T ss_pred ---HHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--CHH
Confidence 333 45554456666544 57876421 01456888887 689999874 3689998654 478
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
++++++++|.++++++.
T Consensus 378 ~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 378 VIQESLERLNKALKDLK 394 (399)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=239.02 Aligned_cols=354 Identities=10% Similarity=0.023 Sum_probs=238.0
Q ss_pred cccceEEEEcCCCccc-ceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC--CC
Q 002941 383 CGENFSVYQDQKNKFI-GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KG 459 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~-~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p--~~ 459 (863)
+|+|+++||.+|++|. +.++|+.++. ..++ .+|+|.+|+.+++++..+.. ..+..+...++++.|++..+ ..
T Consensus 15 ~~~g~~~~d~~~~~~~~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~~~~~l~~~l~~~~g~~~~ 89 (391)
T 4dq6_A 15 SNNFSSKWSEMEKKYGTNDLLPMWVAD--MDFK--AAPCIIDSLKNRLEQEIYGY-TTRPDSYNESIVNWLYRRHNWKIK 89 (391)
T ss_dssp TTTTBHHHHCHHHHHSCSCSEECCSSS--CSSC--CCHHHHHHHHHHHTTCCCCC-BCCCHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCceeeeecccccCCCCceeccccC--CCCC--CCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHHhCCCCc
Confidence 5899999999876221 2458887652 2232 68999999999998643322 12345677888999988776 22
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.++++|+++|++|++.+++.+.+ .| .+||+...+||+....+...+..
T Consensus 90 -~~~v~~~~g~~~a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~---------- 137 (391)
T 4dq6_A 90 -SEWLIYSPGVIPAISLLINELTK---------AN------------DKIMIQEPVYSPFNSVVKNNNRE---------- 137 (391)
T ss_dssp -GGGEEEESCHHHHHHHHHHHHSC---------TT------------CEEEECSSCCTHHHHHHHHTTCE----------
T ss_pred -HHHeEEcCChHHHHHHHHHHhCC---------CC------------CEEEEcCCCCHHHHHHHHHcCCe----------
Confidence 46899999999999999987721 12 57999999999976544322110
Q ss_pred cccCCCcccCCCcccccCceeeecCcch-hhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~ 618 (863)
.+.+|.. +. ...| .-| .+.+++.+. .
T Consensus 138 ---------------------~~~~~~~~~~--------------~~~~--~~d--------~~~l~~~l~-------~- 164 (391)
T 4dq6_A 138 ---------------------LIISPLQKLE--------------NGNY--IMD--------YEDIENKIK-------D- 164 (391)
T ss_dssp ---------------------EEECCCEECT--------------TSCE--ECC--------HHHHHHHCT-------T-
T ss_pred ---------------------EEeeeeeecC--------------CCce--Eee--------HHHHHHHhh-------c-
Confidence 0111100 00 0000 001 244555553 2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhc-----CCCCcEEEeccccC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-----GCVPDIACYGKLLT 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~-----gv~PDivt~sKgLg 692 (863)
+.+|+++.. ++..|.+. +++.+++|.++|++||++||+||+|++|++.|... ....+ +....+.+++|+++
T Consensus 165 -~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 241 (391)
T 4dq6_A 165 -VKLFILCNP-HNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFN 241 (391)
T ss_dssp -EEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHT
T ss_pred -CCEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhcc
Confidence 555666554 88888754 67779999999999999999999999998877522 22222 22233457899997
Q ss_pred -CCCCCceeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 -gG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+| +++|++++++ ++++.+... ..+..+++.++++++++.++|+. .+++.++..+..+..++.+.+.
T Consensus 242 ~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~---- 309 (391)
T 4dq6_A 242 IAG-LQSSYVVLPDEKDYKLLDDA-----FTRIDIKRNNCFSLVATEASYNN--GESWLESFLEYLESNIDFAIKY---- 309 (391)
T ss_dssp CGG-GCCEEEECCSHHHHHHHHHH-----HHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHH----
T ss_pred Ccc-cceEEEEeCCHHHHHHHHHH-----HHhhcCCCCCHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHH----
Confidence 77 8999999875 888877642 12345678899999999999985 3345566666666666655433
Q ss_pred Hhc-CCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCEEEEecCCCCcHHHHH
Q 002941 771 ISS-HRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 771 ~~~-~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~lr~~ppl~~t~eeid 840 (863)
+++ .|.+..+++.|.++. +++.... .....+.+.|+++ ||+++++ .+.+|+.++ +++++++
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~ 380 (391)
T 4dq6_A 310 INENMPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLE 380 (391)
T ss_dssp HHHHCTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHH
T ss_pred HHhhCCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHH
Confidence 333 455555666666555 7776421 0256788999998 9999873 278999865 7899999
Q ss_pred HHHHHHHHHH
Q 002941 841 QLLLKLYQRL 850 (863)
Q Consensus 841 ~~v~~L~~~l 850 (863)
+++++|.+++
T Consensus 381 ~~l~~l~~~l 390 (391)
T 4dq6_A 381 EALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=234.26 Aligned_cols=347 Identities=13% Similarity=0.025 Sum_probs=227.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhc----CCC-CCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~----p~~-~~~~v~f~~SGSeA 473 (863)
.++|+.+|... ..|| .+|.|.+|+.+++++..... . +.. ....+|.++|++++ +.+ ..+.++|+++|++|
T Consensus 35 ~~idl~~g~~~-~~~~-~~~~v~~a~~~~~~~~~~~~-~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 35 KLISLAAGDPD-PELI-PRAVLGEIAKEVLEKEPKSV-M-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp CCEECCSCCCC-TTTS-CHHHHHHHHHHHHHHCGGGG-S-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred ceEeCCCCCCC-chhC-CHHHHHHHHHHHHhhccccc-c-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 78999887754 3477 78999999999998743111 1 111 12344455555544 511 13689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+++.+++ +| .+|++...+||+....+. ..|..
T Consensus 111 ~~~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~-~~g~~----------------------- 145 (407)
T 2zc0_A 111 LDLLGRVLID---------PG------------DVVITENPSYINTLLAFE-QLGAK----------------------- 145 (407)
T ss_dssp HHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHH-TTTCE-----------------------
T ss_pred HHHHHHHhcC---------CC------------CEEEEeCCChHHHHHHHH-HcCCE-----------------------
Confidence 9999998721 12 579999999999644322 11100
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAA 632 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPViqg~ 632 (863)
+..++... ...| .+.+++.+... .....++.+|+ ++.. ++.
T Consensus 146 -----~~~v~~~~----------------------~~~d--------~~~l~~~l~~~--~~~~~~~~~v~~~~~~-~np 187 (407)
T 2zc0_A 146 -----IEGVPVDN----------------------DGMR--------VDLLEEKIKEL--KAKGQKVKLIYTIPTG-QNP 187 (407)
T ss_dssp -----EEEEEEET----------------------TEEC--------HHHHHHHHHHH--HHTTCCEEEEEECCSS-CTT
T ss_pred -----EEEcccCC----------------------CCCC--------HHHHHHHHHhh--hcccCCceEEEECCCC-CCC
Confidence 00111100 0011 23455555410 00113567765 4444 888
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCC---CCcEEEeccccCCCCCCceeeeccHHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC---VPDIACYGKLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv---~PDivt~sKgLggG~~Pigav~~~~~i~ 708 (863)
.|.+ .|.+++++|.++|++||+++|+||+++++.+.|.. .....++. ..++.+++|.++.| +++|+++++++++
T Consensus 188 tG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 265 (407)
T 2zc0_A 188 MGVT-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEIL 265 (407)
T ss_dssp TCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHH
T ss_pred CCcC-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCC-cceEEEecCHHHH
Confidence 8975 57899999999999999999999999998776653 33333432 23556889999988 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTL 786 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~ 786 (863)
+.+.. ..+..+++.++++++++.++|+....+ ++.+++++..+..++.+.+.+.+. .|.+..+ ...|.+
T Consensus 266 ~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~ 336 (407)
T 2zc0_A 266 KKVLM------QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---LPNAEFTKPIAGMF 336 (407)
T ss_dssp HHHHH------HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---CTTSCBCCCSBSSE
T ss_pred HHHHH------HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCEEecCCCcEE
Confidence 88764 124466778999999999988754212 344555555556666554444332 2322222 345778
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.+.+.... ....+.+.|.++ ||++.+. .+.+|+.++.. +++++++++++|.++++++
T Consensus 337 ~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 337 VMFFLPEGA--------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp EEEECSTTC--------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCC--------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 888875321 145788889988 9999863 36899987665 8999999999999988664
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=231.28 Aligned_cols=358 Identities=10% Similarity=0.006 Sum_probs=221.3
Q ss_pred ecccceEEEEcCCCcc-cceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCCh-HHHHHHHHHHhhcC--
Q 002941 382 RCGENFSVYQDQKNKF-IGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVG-- 457 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~-~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~-~~~eLae~L~~~~p-- 457 (863)
++|+|+++||.+|+++ .++|+|+.++. ..+| .+|+|.+|+.+++++..... .....+ ...++++.+.+..+
T Consensus 10 ~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y-~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 10 RHGTWCTQWDYVADRFGTADLLPFTISD--MDFA--TAPCIIEALNQRLMHGVFGY-SRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp --------------------CEECCSSS--CSSC--CCHHHHHHHHHHHTTCCCCC-CCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCCCccchhhhccccCCCCeeEeeecC--CCCC--CCHHHHHHHHHHHhCCCCCC-CCCChHHHHHHHHHHHHHhcCCC
Confidence 3589999999998621 12689987653 3466 58999999999987532111 111334 55566666655434
Q ss_pred CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCc
Q 002941 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (863)
Q Consensus 458 ~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~ 537 (863)
.. .+.++|+++|++|++.+++...+ .| .+|++...+|||....+...+. .
T Consensus 85 ~~-~~~v~~t~g~~~al~~~~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~g~-~------- 134 (390)
T 1d2f_A 85 ID-SQTVVYGPSVIYMVSELIRQWSE---------TG------------EGVVIHTPAYDAFYKAIEGNQR-T------- 134 (390)
T ss_dssp CC-GGGEEEESCHHHHHHHHHHHSSC---------TT------------CEEEEEESCCHHHHHHHHHTTC-E-------
T ss_pred CC-HHHEEEcCCHHHHHHHHHHHhcC---------CC------------CEEEEcCCCcHHHHHHHHHCCC-E-------
Confidence 22 36899999999999999987620 12 5799999999997654432210 0
Q ss_pred CCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 002941 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (863)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~ 617 (863)
+..++.... ...| ..| .+.+++.+.+
T Consensus 135 ---------------------~~~v~~~~~----------------~~~~--~~d--------~~~l~~~l~~------- 160 (390)
T 1d2f_A 135 ---------------------VMPVALEKQ----------------ADGW--FCD--------MGKLEAVLAK------- 160 (390)
T ss_dssp ---------------------EEEEECEEC----------------SSSE--ECC--------HHHHHHHHTS-------
T ss_pred ---------------------EEEeecccC----------------CCcc--ccC--------HHHHHHHhcc-------
Confidence 011111100 0000 011 2456666642
Q ss_pred CcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCC-Cc-EEEeccccC-
Q 002941 618 GCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCV-PD-IACYGKLLT- 692 (863)
Q Consensus 618 ~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~-PD-ivt~sKgLg- 692 (863)
.++.+|++ .| ++..|.+. |.+++++|.++|++||++||+||+|++|++.|..+ ....++.. +| +.+++|+++
T Consensus 161 ~~~~~v~l~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~~s~sK~~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSP--QNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNI 237 (390)
T ss_dssp TTEEEEEEESS--CTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTC
T ss_pred CCCeEEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhhccCccHhhcc
Confidence 24555554 55 78888664 67899999999999999999999999998777532 22222111 13 778999998
Q ss_pred CCCCCceeeecc-HHHHHhhhcCCccceeec-ccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLAT-NAVFDSFVGDSKLKALLH-GHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 693 gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~-~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
+| +++|+++++ +++++.+... .+ ..+| +.++++++++.++|+.. +++.+++++..+..++.+.+.+
T Consensus 238 ~G-~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L-- 306 (390)
T 1d2f_A 238 PA-LTGAYGIIENSSSRDAYLSA------LKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIADKM-- 306 (390)
T ss_dssp GG-GCCEEEEECSHHHHHHHHHH------HHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cC-hhheEEEECCHHHHHHHHHH------HhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHH--
Confidence 78 799999985 7888877541 23 4566 78999999999999853 4456666666666666554443
Q ss_pred HHhc-CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHH
Q 002941 770 QISS-HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 770 ~~~~-~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eei 839 (863)
.+ .|.+..+++.| .++.+++.... . ....+.+.|. ++||++.+. .+.+|+.++. +++++
T Consensus 307 --~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l 375 (390)
T 1d2f_A 307 --NAAFPELNWQIPQSTYLAWLDLRPLN----I---DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKL 375 (390)
T ss_dssp --HHHCSSCCCCCCSBCSEEEEECGGGC----C---CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHH
T ss_pred --HhhCCCCEEecCCccEEEEEEccccC----C---CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHH
Confidence 33 45444455665 44567775420 0 1457888898 689999874 3689998664 58899
Q ss_pred HHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEF 853 (863)
Q Consensus 840 d~~v~~L~~~l~~l 853 (863)
++++++|.++++++
T Consensus 376 ~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 376 EKGVAGLINAIRAV 389 (390)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887653
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=224.36 Aligned_cols=332 Identities=12% Similarity=0.098 Sum_probs=226.3
Q ss_pred ccceEEEE-cCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC
Q 002941 384 GENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462 (863)
Q Consensus 384 G~G~~v~D-~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~ 462 (863)
|.+.+.++ .+|+ +++|+.++. +.++ .+|+|.+|+.++++++.. ++++...+|.++|+++++.. .+
T Consensus 14 g~~~~~~~~~~~~----~~idl~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~ 79 (361)
T 3ftb_A 14 GGDIYTEGVFKGR----ELLDYSSNI--NPLG--IPKSFLNNIDEGIKNLGV-----YPDVNYRRLNKSIENYLKLK-DI 79 (361)
T ss_dssp ------------------CEETTCCC--CTTC--SCHHHHTTHHHHHHGGGS-----CCCTTCHHHHHHHHHHHTCC-SC
T ss_pred CCCHHHHhhcCCC----CEEEecCCC--CCCC--CCHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHhCCC-cc
Confidence 44444444 4777 899999865 3455 479999999999987533 23444578888998888743 46
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 463 ~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
.++|++||++|++.+++.+ .+||+...+||+....+...+..
T Consensus 80 ~i~~~~g~t~al~~~~~~~-------------------------d~vi~~~~~~~~~~~~~~~~g~~------------- 121 (361)
T 3ftb_A 80 GIVLGNGASEIIELSISLF-------------------------EKILIIVPSYAEYEINAKKHGVS------------- 121 (361)
T ss_dssp EEEEESSHHHHHHHHHTTC-------------------------SEEEEEESCCTHHHHHHHHTTCE-------------
T ss_pred eEEEcCCHHHHHHHHHHHc-------------------------CcEEEecCChHHHHHHHHHcCCe-------------
Confidence 8999999999999988754 25999999999875543322110
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
+..++.... ..-+ .+.+++.+. . ..+.
T Consensus 122 ----------------~~~~~~~~~---------------------~~~~--------~~~l~~~l~-------~-~~~v 148 (361)
T 3ftb_A 122 ----------------VVFSYLDEN---------------------MCID--------YEDIISKID-------D-VDSV 148 (361)
T ss_dssp ----------------EEEEECCTT---------------------SCCC--------HHHHHHHTT-------T-CSEE
T ss_pred ----------------EEEeecCcc---------------------cCCC--------HHHHHHhcc-------C-CCEE
Confidence 001111100 0001 134555553 2 3355
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCc
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPL 698 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pi 698 (863)
++..| ++..|.+. |.+.+++|.++|++||+++|+||++++|++.+........+..++++ +++|.++ +| +++
T Consensus 149 ~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~ 224 (361)
T 3ftb_A 149 IIGNP--NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRF 224 (361)
T ss_dssp EEETT--BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCC
T ss_pred EEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCC-cce
Confidence 56667 68888654 77789999999999999999999999887752233344444445544 6799998 77 899
Q ss_pred eeee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 699 AATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 699 gav~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
|+++ +++++++.+.. ...+++.|+++++++.++|+ ++++.++..+..+.+++.+. +.++++|.+
T Consensus 225 g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~ 289 (361)
T 3ftb_A 225 GYGITNNKEIAAKIKA--------KQNPWNINCFAEMAAINCLK---DTNYIEESLLWIKKERKRFI----EELNKIGFI 289 (361)
T ss_dssp EEEEESCHHHHHHHHT--------TSCTTCSCHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHH----HHHHHSSSE
T ss_pred eEEEeCCHHHHHHHHh--------hCCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH----HHHHhCCCC
Confidence 9998 89999998875 23467889999999998887 34556666666666666553 344567777
Q ss_pred e-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 778 Q-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 778 ~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
. .+++.|.++.+.+.... ...+.+.|.++||++++. .+.+|+.++ +++++++++++|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~---------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~ 357 (361)
T 3ftb_A 290 KRVFSPHANFVLCRLENIS---------GEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGV 357 (361)
T ss_dssp EEEECCSSSEEEEEESSSC---------HHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ceecCCCCeEEEEEcCCCC---------HHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 7 77888999998886522 567889999999999874 378999853 888888888888776
Q ss_pred HH
Q 002941 850 LE 851 (863)
Q Consensus 850 l~ 851 (863)
.+
T Consensus 358 ~~ 359 (361)
T 3ftb_A 358 EN 359 (361)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=233.49 Aligned_cols=346 Identities=13% Similarity=0.045 Sum_probs=229.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCCC--CCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~~--~~~v~f~~SGSeAvE 475 (863)
+++|+.+|..+ +++ .+|+|.+|+.+++++... +....+..+...+++++|++..+... .+.++|+++|++|++
T Consensus 40 ~~id~~~g~~~-~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~ 116 (407)
T 3nra_A 40 RPVDFSHGDVD-AHE--PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 116 (407)
T ss_dssp CCEETTSCCTT-TSC--CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred ceeeecCcCCC-CCC--CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence 48999886444 344 589999999999886422 11123456778889999998876420 158999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| .+|++...+||+....+...+. .
T Consensus 117 ~~~~~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~-~------------------------- 149 (407)
T 3nra_A 117 LAVAATVA---------RG------------DKVAIVQPDYFANRKLVEFFEG-E------------------------- 149 (407)
T ss_dssp HHHHTTCC---------TT------------CEEEEEESCCTHHHHHHHHTTC-E-------------------------
T ss_pred HHHHHhCC---------CC------------CEEEEcCCcccchHHHHHHcCC-E-------------------------
Confidence 99986521 12 5799999999876543332211 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++.. +. ... ...+ .-| .+.+++.+.+ +..+.+++.| +++.|.
T Consensus 150 ---~~~~~~~--~~---------~~~--~~~~--~~d--------~~~l~~~l~~-------~~~~v~~~~p--~nptG~ 194 (407)
T 3nra_A 150 ---MVPVQLD--YV---------SAD--ETRA--GLD--------LTGLEEAFKA-------GARVFLFSNP--NNPAGV 194 (407)
T ss_dssp ---EEEEEBC--CC---------SSC--CSSC--CBC--------HHHHHHHHHT-------TCCEEEEESS--CTTTCC
T ss_pred ---EEEeecc--cc---------ccc--CcCC--CcC--------HHHHHHHHhh-------CCcEEEEcCC--CCCCCc
Confidence 0001110 00 000 0000 011 2456666652 2334455666 788886
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcC-----CCCcEEEeccccC-CCCCCceeeeccHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG-----CVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g-----v~PDivt~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
+ +|.+.+++|.++|++||+++|+||+|++|++.|..+ ....++ ...++.++||+++ .| +++|+++++++++
T Consensus 195 ~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 272 (407)
T 3nra_A 195 V-YSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAII 272 (407)
T ss_dssp C-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHH
T ss_pred c-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHH
Confidence 4 478899999999999999999999999988877643 333332 2334557899998 77 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLC 787 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~ 787 (863)
+.+.. ..+.++++.++++++++.++|+. ..++.++..+..+.+++.+ .+.++++|.+..+... |.++
T Consensus 273 ~~l~~------~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~~~~~~~~~~~~~~~~~ 340 (407)
T 3nra_A 273 ARMEK------LQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDEL----LHVLRGCEGVFARTPQAGSYL 340 (407)
T ss_dssp HHHHH------HHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHHHH----HHHHHTSTTCBCCCCSBSSEE
T ss_pred HHHHH------HHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHH----HHHHhcCCCceeccCCeeEEE
Confidence 98864 23556778889888887777652 2344555555555555544 3444556655444554 4777
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+.... .....+...|++ +||++.+. .+.+|+.++ .++++|++++++|.++++++
T Consensus 341 ~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 341 FPRLPKLA-------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp CCBCCCBS-------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 77765421 025568888875 59999873 378999865 39999999999999988764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=230.14 Aligned_cols=341 Identities=15% Similarity=0.087 Sum_probs=227.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
+++|+.+|..+. .|| .+|.+.+|+.+++++..... ..+.. ....+|.++|+++++.+ .+.++|+++|++|++.++
T Consensus 33 ~~i~l~~g~~~~-~~~-~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 33 GILSFAGGLPAP-ELF-PKEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIGVR-PEEVLITTGSQQALDLVG 108 (397)
T ss_dssp TCEEESSCCCCG-GGC-CHHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CceecCCCCCCc-hhC-CHHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhCCC-hhhEEEeccHHHHHHHHH
Confidence 789998877653 467 78999999999988643111 11222 23567788888877532 368999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+...+ .| .+|++...+||+....+...+. .
T Consensus 109 ~~~~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~-~---------------------------- 138 (397)
T 2zyj_A 109 KVFLD---------EG------------SPVLLEAPSYMGAIQAFRLQGP-R---------------------------- 138 (397)
T ss_dssp HHHCC---------TT------------CEEEEEESCCHHHHHHHHTTCC-E----------------------------
T ss_pred HHhCC---------CC------------CEEEEeCCCcHHHHHHHHHcCC-E----------------------------
Confidence 87620 12 5799999999997654332110 0
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCcee
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHM 637 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPViqg~gG~~~ 637 (863)
+..++... ...| .+.+++.+++ .++.+|+ +... ++..|.+
T Consensus 139 ~~~~~~~~----------------------~~~d--------~~~l~~~l~~-------~~~~~v~~~~~~-~nptG~~- 179 (397)
T 2zyj_A 139 FLTVPAGE----------------------EGPD--------LDALEEVLKR-------ERPRFLYLIPSF-QNPTGGL- 179 (397)
T ss_dssp EEEEEEET----------------------TEEC--------HHHHHHHHHH-------CCCSCEEECCBS-CTTTCCB-
T ss_pred EEecCcCC----------------------CCCC--------HHHHHHHHhh-------cCCeEEEECCCC-cCCCCCc-
Confidence 00111100 0011 2456666642 1344553 3333 7888865
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCC---Cc---EEEeccccCCCCCCceeeeccHHHHHh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV---PD---IACYGKLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~---PD---ivt~sKgLggG~~Pigav~~~~~i~~~ 710 (863)
.+.+++++|.++|++||+++|+||++++|++.|.. .....++.. ++ +.+++|++++| +++|++++++++++.
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~ 258 (397)
T 2zyj_A 180 TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG-LRVAFAVAHPEALQK 258 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG-GCCEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc-ceeEEEecCHHHHHH
Confidence 57889999999999999999999999999877753 333333322 23 45789999988 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc-CC-CeeEe-cccceEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS-HR-TVQRV-VALGTLC 787 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~-~p-~v~~v-rg~Gl~~ 787 (863)
+... .+..+++.++++++++.++|+.... +..+++.+..+..++.+.+. +.+ .| .+..+ ...|.++
T Consensus 259 l~~~------~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~----L~~~~~~g~~~~~~~~g~~~ 327 (397)
T 2zyj_A 259 LVQA------KQGADLHTPMLNQMLVHELLKEGFS-ERLERVRRVYREKAQAMLHA----LDREVPKEVRYTRPKGGMFV 327 (397)
T ss_dssp HHHH------HHHHHSSCCHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHH----HHHHSCTTSEECCCSBSSEE
T ss_pred HHHH------HHhhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHH----HHHHCCCCeEEccCCccEEE
Confidence 7641 2445677799999998888864211 23344444444444444333 333 34 23333 3457888
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+++.... ....+.+.|.++||++.+. .+.+|+.++.. +++++++++++|.++++++.
T Consensus 328 ~~~~~~~~--------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 328 WMELPKGL--------SAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp EEECSTTC--------CHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCC--------CHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 88885321 1467889999999999872 37899987654 89999999999999987764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=221.34 Aligned_cols=326 Identities=14% Similarity=0.083 Sum_probs=231.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++. +.++ .+|+|.+|+.+++++.... .+..+...+|.++|+++++....+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 31 GLVKLDAME--NPYR--LPPALRSELAARLGEVALN---RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TCEECCSSC--CCCC--CCHHHHHHHHHHHHHHHTT---CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CeeEccCCC--CCCC--CCHHHHHHHHHHhhhhhhh---cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 688888765 4455 5799999999998853221 23344567899999998874113689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
..++ .| .+|++...+||+....+...+. .+
T Consensus 104 ~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~g~-----------------------------~~ 133 (367)
T 3euc_A 104 AAAR---------PG------------AKVMAPVPGFVMYAMSAQFAGL-----------------------------EF 133 (367)
T ss_dssp HTCC---------TT------------CEEEEEESCSCCSCHHHHTTTC-----------------------------EE
T ss_pred HHcC---------CC------------CEEEEcCCCHHHHHHHHHHcCC-----------------------------eE
Confidence 6621 12 5799999999987544322110 00
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ ..| .+.+++.+.+ .++.+|+++.. ++..|.+. +
T Consensus 134 ~~v~~~~~~---------------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~-~ 175 (367)
T 3euc_A 134 VGVPLRADF---------------------TLD--------RGAMLAAMAE-------HQPAIVYLAYP-NNPTGNLF-D 175 (367)
T ss_dssp EEEECCTTS---------------------CCC--------HHHHHHHHHH-------HCCSEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC---------------------CCC--------HHHHHHHhhc-------cCCCEEEEcCC-CCCCCCCC-C
Confidence 111111000 011 2456666642 13456666665 88888755 6
Q ss_pred HHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 640 ~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
.+.+++|.++|++| |+++|+||+|++|+..+.......++...++.+++|...+| +++|++++++++++.+..
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~---- 250 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAG-IRLGYVAGDPQWLEQLDK---- 250 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCS-CCEEEEEECHHHHHHHGG----
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccc-cCceeeeeCHHHHHHHHH----
Confidence 77899999999999 99999999999987655555555556556677899995567 899999999999998864
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcC
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN 797 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~ 797 (863)
...+|+.++++++++.++|+. .++.++..+..+.+++.+ .+.+.++|.+....+.|.++.+.+. .
T Consensus 251 ----~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l----~~~l~~~~g~~~~~~~~~~~~~~~~--~-- 315 (367)
T 3euc_A 251 ----VRPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRV----AEGMAAHGGVTVFPSAANFLLARVP--D-- 315 (367)
T ss_dssp ----GCCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH----HHHHHTSTTCEECCCSSSEEEEECS--C--
T ss_pred ----hCCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHH----HHHHHhCCCcEECCCCCeEEEEECC--C--
Confidence 234677999999999999885 444555566555666544 3445566666656778888888775 2
Q ss_pred CCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 798 AGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
...+.+.|.++||++++. .+.+|++. .+++++++++++|++++
T Consensus 316 -------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~---~~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 316 -------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTV---STPEENAQFLEAFAASL 365 (367)
T ss_dssp -------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEEC---CCHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEec---CCHHHHHHHHHHHHHHh
Confidence 456888899999999874 27899984 39999999999998875
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=229.04 Aligned_cols=355 Identities=13% Similarity=0.076 Sum_probs=227.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc----cccCCCCCChHHHHHHHHHHhhcC---CCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~p---~~~~~~v~f~~SGSe 472 (863)
.++|+.+|.... .|| .+|+|.+|+.+++++.. .+.......+...++++.+.+..+ .. .+.++|+++|++
T Consensus 44 ~~idl~~g~~~~-~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~v~~t~G~~~ 120 (425)
T 1vp4_A 44 DAISFGGGVPDP-ETF-PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-EDNLIFTVGSQQ 120 (425)
T ss_dssp TCEECCCCSCCG-GGS-CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-GGGEEEEEHHHH
T ss_pred CceeCCCCCCCc-ccC-CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-cccEEEeccHHH
Confidence 789998887653 477 78999999999987632 111111223444555555544325 22 368999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 121 al~~~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~-~---------------------- 156 (425)
T 1vp4_A 121 ALDLIGKLFLD---------DE------------SYCVLDDPAYLGAINAFRQYLA-N---------------------- 156 (425)
T ss_dssp HHHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHTTTC-E----------------------
T ss_pred HHHHHHHHhCC---------CC------------CEEEEeCCCcHHHHHHHHHcCC-E----------------------
Confidence 99999986520 12 5799999999997544322110 0
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++... ...| .+.+++.+++.....++.++.+|++.|..++.
T Consensus 157 ------~~~v~~~~----------------------~~~d--------~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 157 ------FVVVPLED----------------------DGMD--------LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp ------EEEEEEET----------------------TEEC--------HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred ------EEEeccCC----------------------CCCC--------HHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 00111100 0011 23444555320000012357776433322788
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhcCCCCc---EEEeccccCCCCCCceeeeccHHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD---IACYGKLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD---ivt~sKgLggG~~Pigav~~~~~i~ 708 (863)
.|.+ .+.+++++|.++|++||+++|+||++++|.+.|.. .....++..++ +.+++|++++| +++|+++++++++
T Consensus 201 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 278 (425)
T 1vp4_A 201 AGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFI 278 (425)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc-cceEEEeeCHHHH
Confidence 8865 57899999999999999999999999998776753 33333332232 44789999988 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccceEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLC 787 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~Gl~~ 787 (863)
+.+... ....+++.++++++++.++|+....+++.+++++..+..++.+.+.+.+.+..++.+..+ ...|.++
T Consensus 279 ~~l~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~ 352 (425)
T 1vp4_A 279 RKIVQA------KQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFI 352 (425)
T ss_dssp HHHHHH------HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEE
T ss_pred HHHHHH------hhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEE
Confidence 887641 234567789999999999998642233444555555555555544443332221134333 3457888
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+++.... ...++++.|.++||++.|. .+.+|+.++. .+++++++++++|.++++++.
T Consensus 353 ~~~~~~~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 353 WLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp EEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 88886421 1235778888899999873 3689998765 489999999999999987764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-23 Score=226.38 Aligned_cols=331 Identities=12% Similarity=0.077 Sum_probs=223.2
Q ss_pred EcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCCh
Q 002941 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470 (863)
Q Consensus 391 D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SG 470 (863)
+.+|+ +++|+.++. +.+| .+|++.+|+.+++++... +......+|.++|+++++.+ .+.++|+++|
T Consensus 20 ~~~~~----~~idl~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~~v~~~~g~ 85 (364)
T 1lc5_A 20 GISPD----QLLDFSANI--NPLG--MPVSVKRALIDNLDCIER-----YPDADYFHLHQALARHHQVP-ASWILAGNGE 85 (364)
T ss_dssp TSCGG----GSEECSSCC--CTTC--CCHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHHTSC-GGGEEEESSH
T ss_pred CCCcc----ceEEecccc--CCCC--CCHHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHCcC-HHHEEECCCH
Confidence 45677 899998866 3466 479999999998876322 22334568888898888743 4689999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.+++.+ . | .+|++...+||+....+...+. .
T Consensus 86 ~~al~~~~~~~-~----------g------------d~vl~~~p~y~~~~~~~~~~g~-~-------------------- 121 (364)
T 1lc5_A 86 TESIFTVASGL-K----------P------------RRAMIVTPGFAEYGRALAQSGC-E-------------------- 121 (364)
T ss_dssp HHHHHHHHHHH-C----------C------------SEEEEEESCCTHHHHHHHHTTC-E--------------------
T ss_pred HHHHHHHHHHc-C----------C------------CeEEEeCCCcHHHHHHHHHcCC-e--------------------
Confidence 99999999865 1 2 4699999999997654432211 0
Q ss_pred CcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
+..++.... ..++. +++.++.. .++..+.++++| +
T Consensus 122 --------~~~v~~~~~-----------------~~~~~--------------l~~~~~~~----~~~~~~v~i~~p--~ 156 (364)
T 1lc5_A 122 --------IRRWSLREA-----------------DGWQL--------------TDAILEAL----TPDLDCLFLCTP--N 156 (364)
T ss_dssp --------EEEEECCGG-----------------GTTCC--------------CTTHHHHC----CTTCCEEEEESS--C
T ss_pred --------EEEEeCCcc-----------------cccch--------------hHHHHHhc----cCCCCEEEEeCC--C
Confidence 011111100 00000 01112110 122234556788 6
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chh-hhcCCCCcEEEeccccC-CCCCCceeee-ccHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTA-DLLGCVPDIACYGKLLT-GGVIPLAATL-ATNA 706 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~-e~~gv~PDivt~sKgLg-gG~~Pigav~-~~~~ 706 (863)
+..|.+ .|.+++++|.++|++||+++|+||+|++|++.|.. ... +.++....+.+++|+++ +| +++|+++ ++++
T Consensus 157 nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~ 234 (364)
T 1lc5_A 157 NPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDDA 234 (364)
T ss_dssp TTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCCHH
T ss_pred CCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCc-cceEEEEECCHH
Confidence 788865 57899999999999999999999999988655432 111 22333334458899998 78 8999999 9999
Q ss_pred HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 707 i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
+++.+.. ...+++.|+++++++.++|+. .++.+++++..+..++.+. +.+.++|.+..+++.|.+
T Consensus 235 ~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~g~~ 299 (364)
T 1lc5_A 235 AMARMRR--------QQMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFY----QALCQLPLLTVYPGRANY 299 (364)
T ss_dssp HHHHHHH--------HSCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHH----HHHHTSTTEEECCCSSSE
T ss_pred HHHHHHH--------hCCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHH----HHHhcCCCCEECCCCCeE
Confidence 9988764 224678899999988888763 4455666666666666543 344556666656778888
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+++..+ ...+.+.|.++||++.+. .+.+|+. ..+++++++++++|++.++++.
T Consensus 300 ~~~~~~~~----------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis---~~~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 300 LLLRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVA---IRSAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp EEEEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEE---CCCHHHHHHHHHHHHHHC----
T ss_pred EEEECCCc----------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEE---eCCHHHHHHHHHHHHHHhhccc
Confidence 88877532 234778889999999874 3689987 3468899999999988876653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-25 Score=250.09 Aligned_cols=355 Identities=12% Similarity=0.047 Sum_probs=229.6
Q ss_pred ecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC--CC
Q 002941 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KG 459 (863)
Q Consensus 382 ~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p--~~ 459 (863)
++|+|+++||.+|+ .+.++|+..|. ..++ .+|++.+|+.+++++..+.... ...+...++++.|.+..+ ..
T Consensus 16 ~~~~g~~~~d~~g~--~~~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y~~-~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 16 RLSHHTYKWKETET--DPQLLPAWIAD--MDFE--VMPEVKQAIHDYAEQLVYGYTY-ASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 35899999999987 23789987654 2455 4799999999998753221111 123334444444444333 11
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.++++|+++|++|++.+++.+.+ .| .+|++...+||+....+...+...
T Consensus 89 -~~~v~~~~g~~~a~~~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~~--------- 137 (392)
T 3b1d_A 89 -KEDIVFVEGVVPAISIAIQAFTK---------EG------------EAVLINSPVYPPFARSVRLNNRKL--------- 137 (392)
Confidence 36899999999999999997731 12 579999999999765443321100
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
+.+|... . ...|. .| .+.+++.+.+ .+
T Consensus 138 ----------------------~~~~~~~------------~--~g~~~--~d--------~~~l~~~l~~-------~~ 164 (392)
T 3b1d_A 138 ----------------------VSNSLKE------------E--NGLFQ--ID--------FEQLENDIVE-------ND 164 (392)
Confidence 0011000 0 00000 00 1334444421 23
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC----cchhhh--cCCCCcEEEeccccC-
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL--LGCVPDIACYGKLLT- 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~----~~a~e~--~gv~PDivt~sKgLg- 692 (863)
+.+|+++.. ++..|.+ ++++++++|.++|++||++||+||++++|++.|. .+.+.. .+..+++.++||+++
T Consensus 165 ~~~v~~~~~-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 242 (392)
T 3b1d_A 165 VKLYLLCNP-HNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNI 242 (392)
Confidence 456666654 7888865 5677999999999999999999999999987763 333322 455567789999998
Q ss_pred CCCCCceeeeccH-HHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 693 gG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+| +++|++++++ ++++.+... ...+++ +.++++++++.++|+.. +++.+++++..+..++.+.+ .
T Consensus 243 ~G-~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~ 309 (392)
T 3b1d_A 243 AG-TKNSYAIIENPTLCAQFKHQ------QLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQFAVE----Y 309 (392)
Confidence 78 8999999875 488877642 233333 46899999999998742 34455666655555554433 3
Q ss_pred Hhc-CCCeeEecccceEEE-EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHH
Q 002941 771 ISS-HRTVQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 771 ~~~-~p~v~~vrg~Gl~~~-iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid 840 (863)
+++ +|.+..+++.|.++. +++.... .....+++.|+ ++||++.|. .+.+|+. +..++++|+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~ 380 (392)
T 3b1d_A 310 FAQEAPRLKVMKPQGTYLIWLDFSDYG-------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLVE 380 (392)
Confidence 333 455555677777765 7775321 02446788886 789999873 2567775 455788999
Q ss_pred HHHHHHHHHHH
Q 002941 841 QLLLKLYQRLE 851 (863)
Q Consensus 841 ~~v~~L~~~l~ 851 (863)
+++++|.++++
T Consensus 381 ~~l~~l~~~l~ 391 (392)
T 3b1d_A 381 EICKRIVCCLP 391 (392)
Confidence 99999988764
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=222.43 Aligned_cols=330 Identities=11% Similarity=-0.021 Sum_probs=221.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhc----CCC-CCC-eEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WAS-RAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~----p~~-~~~-~v~f~~SGSe 472 (863)
+++|+.+|.. .+|. +|.|.+|+.+++++... ..+.. ....+|.++|++++ +.+ ..+ .++|+++|++
T Consensus 26 ~~idl~~~~~--~~~~--~~~v~~a~~~~~~~~~~---~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 26 GLIDLSIGST--DLPP--PEAPLKALAEALNDPTT---YGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp CCEECSSCCC--CCCC--CHHHHHHHHHHTTCGGG---SSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred CEEeccCCCC--CCCC--CHHHHHHHHHHHhCCCc---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 7899988754 5664 79999999999865311 12333 24566777777765 532 113 8999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 99 a~~~~~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~g~-~---------------------- 134 (376)
T 2dou_A 99 GLAHLLLALTE---------PE------------DLLLLPEVAYPSYFGAARVASL-R---------------------- 134 (376)
T ss_dssp HHHHHHHHHCC---------TT------------CEEEEESSCCHHHHHHHHHTTC-E----------------------
T ss_pred HHHHHHHHhcC---------CC------------CEEEECCCCcHhHHHHHHHcCC-E----------------------
Confidence 99999987620 12 5799999999997654432211 0
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++.++.+ . .|. +.+++.+. .++.+|+++.. ++.
T Consensus 135 ------~~~~~~~~~~-------------------~--~d~--------~~l~~~l~--------~~~~~v~l~~p-~np 170 (376)
T 2dou_A 135 ------TFLIPLREDG-------------------L--ADL--------KAVPEGVW--------REAKVLLLNYP-NNP 170 (376)
T ss_dssp ------EEEECBCTTS-------------------S--BCG--------GGSCHHHH--------HHEEEEEECSS-CTT
T ss_pred ------EEEeeCCCCC-------------------C--CCH--------HHHHHhhc--------cCceEEEECCC-CCC
Confidence 0111111110 0 010 12333342 24566776643 788
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhh---cCCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL---LGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~---~gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
.|.+ .|.+++++|.++|++||+++|+||+|++|++.|... ..+. .+...++.+++|+++ +| +++|++++++++
T Consensus 171 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~ 248 (376)
T 2dou_A 171 TGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEA 248 (376)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHH
T ss_pred cCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHH
Confidence 8865 578999999999999999999999999987766422 2222 233344558899997 77 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~ 786 (863)
++.+... .+..+++.++++++++.++|+.. +++.++.++..+..++.+.+ .+.++ +..+++ .|++
T Consensus 249 ~~~l~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~L~~~--~~~~~~~~~~~ 314 (376)
T 2dou_A 249 LARLERV------KGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAE----ALKGV--LSLLPPRATMY 314 (376)
T ss_dssp HHHHHHH------HHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH----HHTTT--SEECCCCBSSE
T ss_pred HHHHHHH------HHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHH----HHHHh--cCccCCCeeEE
Confidence 9988641 24456778999999999988753 34555666656666655433 34444 333333 4667
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.+++.... ....+.+.|+++||++.+. .+.+|+.+. .+++++++++++|.+++
T Consensus 315 ~~~~~~~~~--------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 315 LWGRLPEGV--------DDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp EEEECCTTC--------CHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred EEEECCCCC--------CHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 778875321 1456888999999999874 378999865 38899999999998764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-22 Score=217.46 Aligned_cols=336 Identities=10% Similarity=0.031 Sum_probs=231.1
Q ss_pred cceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeE
Q 002941 385 ENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA 464 (863)
Q Consensus 385 ~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v 464 (863)
++.++++.+|+ +++|+.++. +.++ .+|+|.+|+.+++++.. .++.+...+|.++|+++++.. .+.+
T Consensus 6 ~~~~~~~~~~~----~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~-----~y~~~~~~~l~~~la~~~~~~-~~~i 71 (354)
T 3ly1_A 6 ESAAFTAPSTD----NPIRINFNE--NPLG--MSPKAQAAARDAVVKAN-----RYAKNEILMLGNKLAAHHQVE-APSI 71 (354)
T ss_dssp ---CCCCCCSS----SCEECSSCC--CSSC--CCHHHHHHHHHTGGGTT-----SCCHHHHHHHHHHHHHHTTSC-GGGE
T ss_pred ccccccCCCCC----ceEEccCCC--CCCC--CCHHHHHHHHHHHhhCc-----CCCCCchHHHHHHHHHHhCCC-hHHE
Confidence 45677888888 899999865 4555 58999999999887532 344566789999999998743 4689
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCC
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~ 544 (863)
+|+++|++|++.+++...+ .| .+|++...+||+....+...+..
T Consensus 72 ~~~~g~~~a~~~~~~~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~--------------- 115 (354)
T 3ly1_A 72 LLTAGSSEGIRAAIEAYAS---------LE------------AQLVIPELTYGDGEHFAKIAGMK--------------- 115 (354)
T ss_dssp EEESHHHHHHHHHHHHHCC---------TT------------CEEEEESSSCTHHHHHHHHTTCE---------------
T ss_pred EEeCChHHHHHHHHHHHhC---------CC------------CeEEECCCCchHHHHHHHHcCCE---------------
Confidence 9999999999999987621 12 57999999999865433322110
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..++....+ .-| .+.+++.+.+ + .++.+|+
T Consensus 116 --------------~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~-~~~~~v~ 146 (354)
T 3ly1_A 116 --------------VTKVKMLDNW---------------------AFD--------IEGLKAAVAA-----Y-SGPSIVY 146 (354)
T ss_dssp --------------EEEECCCTTS---------------------CCC--------HHHHHHHHHT-----C-SSCEEEE
T ss_pred --------------EEEecCCCCC---------------------CCC--------HHHHHHHhcc-----C-CCCCEEE
Confidence 0111111000 011 2456666652 1 3455666
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-h---hhc-CCCCcEEEeccccC-CCCCCc
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A---DLL-GCVPDIACYGKLLT-GGVIPL 698 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~---e~~-gv~PDivt~sKgLg-gG~~Pi 698 (863)
++.. ++..|.+. +.+.+++|.++| +||+++|+||+|++|++.|.... . ..+ +....+.+++|+++ .| +++
T Consensus 147 l~~p-~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~ 222 (354)
T 3ly1_A 147 LVNP-NNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRV 222 (354)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCC
T ss_pred EeCC-CCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhh
Confidence 6554 78888665 566678888888 79999999999999887764211 1 222 33344557899998 77 899
Q ss_pred eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 699 AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
|++++++++++.+... ...++.++++++++.++|+ +.++.++.++..+..++.+.+.+.+. + +.
T Consensus 223 G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~----~-~~ 286 (354)
T 3ly1_A 223 GYAVAHPTVIALMGRY--------VAGEKINFSGVDAALASMN---DSAFITYSKKSNDVSRQILLKALEDL----K-LP 286 (354)
T ss_dssp EEEECCHHHHHHHGGG--------TTCSCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHH----T-CC
T ss_pred eeeecCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHC----C-Ce
Confidence 9999999999988752 2237889999999998877 33555666666666666655444332 2 33
Q ss_pred EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 779 ~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+++.|.++.+++..+ ...+.+.|.++||+++ ...+.+|++. .+++++++++++|++++++
T Consensus 287 ~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~v~g~~~~~~~~iRis~---~~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 287 YLPSEGNFVFHQLVVP----------LKDYQTHMADAGVLIGRAFPPADNWCRISL---GTPQEMQWVADTMREFRKK 351 (354)
T ss_dssp BCCCCSSEEEEECSSC----------HHHHHHHHHHTTEECCCCCTTCTTEEEEEC---CCHHHHHHHHHHHHHHHHT
T ss_pred ECCCCceEEEEECCCC----------HHHHHHHHHHCCEEEeecCCCCCCEEEEEc---CCHHHHHHHHHHHHHHHHh
Confidence 3466788888887642 4678889999999987 1237899983 3899999999999988753
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=220.61 Aligned_cols=338 Identities=12% Similarity=0.042 Sum_probs=217.9
Q ss_pred CCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc---CCC-CCChHHHHHHHHHHhhcCCCCCCeEEEeC
Q 002941 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPE-NVYEPALECAELLLQGVGKGWASRAYFSD 468 (863)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~---~~~-~~~~~~~eLae~L~~~~p~~~~~~v~f~~ 468 (863)
||+ +|+|+.+ +.++|+..+|+|.+|+.++++++.... ... ..++...+|.++|+++++. +..++++
T Consensus 44 ~g~----~~i~~~~---~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~i~~~ 113 (401)
T 2bwn_A 44 GKQ----DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK---EAALVFS 113 (401)
T ss_dssp CEE----EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC---SEEEEES
T ss_pred CCC----cEEEeeC---CCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CcEEEEC
Confidence 567 8999887 334454347999999999998865321 111 2346788999999999974 3455558
Q ss_pred ChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCccc
Q 002941 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (863)
Q Consensus 469 SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~ 548 (863)
||++|++.+++++.+ . . +| ..|++... +|+....++...+..
T Consensus 114 sG~~a~~~~~~~l~~-~--~----~g------------d~Vl~~~~-~~~~~~~~~~~~g~~------------------ 155 (401)
T 2bwn_A 114 SAYNANDATLSTLRV-L--F----PG------------LIIYSDSL-NHASMIEGIKRNAGP------------------ 155 (401)
T ss_dssp CHHHHHHHHHHHHHH-H--S----TT------------CEEEEETT-CCHHHHHHHHHSCCC------------------
T ss_pred CcHHHHHHHHHHHhc-C--C----CC------------CEEEECch-hhHHHHHHHHHcCCe------------------
Confidence 999999999887522 1 0 12 34665554 455444333221100
Q ss_pred CCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
.+.+|. +| .+.+++.++. ..++++++|+++++
T Consensus 156 ------------~~~v~~------------------------~d--------~~~le~~l~~----~~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 156 ------------KRIFRH------------------------ND--------VAHLRELIAA----DDPAAPKLIAFESV 187 (401)
T ss_dssp ------------EEEECT------------------------TC--------HHHHHHHHHH----SCTTSCEEEEEESB
T ss_pred ------------EEEEcC------------------------CC--------HHHHHHHHHh----hccCCceEEEEecC
Confidence 011110 11 2345566653 12246788999997
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCC--CCcEE--EeccccCCCCCCceeee
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATL 702 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv--~PDiv--t~sKgLggG~~Pigav~ 702 (863)
+++.|.+.+ +++|.++|++||+++|+||+|+ .||++|..+. ..+++ .+|++ ++||+++. |.|+++
T Consensus 188 -~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~---~GG~~~ 258 (401)
T 2bwn_A 188 -YSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV---FGGYIA 258 (401)
T ss_dssp -CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS---CCEEEE
T ss_pred -cCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC---CCCEEe
Confidence 999998876 8999999999999999999998 3566776555 56665 35655 89999982 225688
Q ss_pred ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 703 ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 703 ~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
+++++++.+..... ...++.+.++++++++.++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+ ..
T Consensus 259 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~---~~ 328 (401)
T 2bwn_A 259 ASARMVDAVRSYAP----GFIFSTSLPPAIAAGAQASIAFLKTAE-GQKLRDAQQMHAKVLKMRLKAL--GMPII---DH 328 (401)
T ss_dssp ECHHHHHHHHHHCH----HHHTSBCCCHHHHHHHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHHHH--TCCBC---CC
T ss_pred cCHHHHHHHHHhCc----CceecCCCCHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHC--CCccc---CC
Confidence 89999888753110 112233457799999999999886642 1233333334444443344332 33322 22
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.|.++.+.+... .....+.+.|+ ++||++.|. + +.+|+.++..++++++++++++|+++++++
T Consensus 329 ~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 329 GSHIVPVVIGDP--------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp SSSCEEEECCCH--------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CCCeEEEEeCCh--------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 345777776431 13567888886 789999764 2 589999888899999999999999887653
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=227.40 Aligned_cols=349 Identities=11% Similarity=0.043 Sum_probs=227.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc----cccCCCCCChHHHHHHHHHHhhcCC-CCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGK-GWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~p~-~~~~~v~f~~SGSeAv 474 (863)
.++|+.+|..... ++ .++++.+|+.+++++.. .+....+..+....+++.+.+..+. . .+.++++++|++|+
T Consensus 77 ~~i~l~~g~p~~~-~~-p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~-~~~v~~t~G~~~al 153 (448)
T 3aow_A 77 DIISLAGGLPNPK-TF-PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQ-DNDIMITSGSQQAL 153 (448)
T ss_dssp SSEECCCCCCCGG-GS-CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCT-TSEEEEESSHHHHH
T ss_pred CcEeCCCCCCCch-hC-CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCC-hhhEEEeCcHHHHH
Confidence 6889988876543 35 68999999999987632 1111111223333444444333253 2 47899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.++++... .| .+|++...+|||....+... |.
T Consensus 154 ~~~~~~l~~---------~G------------d~Vlv~~p~y~~~~~~~~~~-g~------------------------- 186 (448)
T 3aow_A 154 DLIGRVFLN---------PG------------DIVVVEAPTYLAALQAFNFY-EP------------------------- 186 (448)
T ss_dssp HHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHTT-CC-------------------------
T ss_pred HHHHHHHcC---------CC------------CEEEEeCCChHHHHHHHHHc-CC-------------------------
Confidence 999987621 12 57999999999975443221 10
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
..+.+|... ...| .+.+++.++.. .....++.+|++.|..++..|
T Consensus 187 -----~~~~v~~~~--------------------~g~d--------~~~L~~~l~~~--~~~~~~~k~v~~~~~~~NPtG 231 (448)
T 3aow_A 187 -----QYIQIPLDD--------------------EGMK--------VEILEEKLKEL--KSQGKKVKVVYTVPTFQNPAG 231 (448)
T ss_dssp -----EEEEEEEET--------------------TEEC--------HHHHHHHHHHH--HHTTCCEEEEEECCSSCTTTC
T ss_pred -----EEEEeccCC--------------------CCCC--------HHHHHHHHhhh--hccCCCCeEEEECCCCCCCcC
Confidence 001111000 0011 23455555410 001135777766664478888
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC----cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~----~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~ 710 (863)
.+ .+.+++++|.++|++||+++|+||+++++.+.|. ...++..+...++.+|||.++.| +++|++++++++++.
T Consensus 232 ~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~ 309 (448)
T 3aow_A 232 VT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRK 309 (448)
T ss_dssp CC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGG-GCCEEEEECHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcccc-ccEEEEEeCHHHHHH
Confidence 65 5789999999999999999999999998876665 22333334556777999999988 899999999999998
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-CeeEecc-cceEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVA-LGTLCA 788 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p-~v~~vrg-~Gl~~~ 788 (863)
+... ....+++.++++++++.++|+...-+++.+++++..+..++.+.+.+.+. .| .+..++. .|+++.
T Consensus 310 l~~~------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~p~~g~~~~ 380 (448)
T 3aow_A 310 MEIA------KQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEGVKWTKPEGGMFIW 380 (448)
T ss_dssp HHHH------HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTTCEECCCSBSSEEE
T ss_pred HHHH------HHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEeCCCccEEEE
Confidence 7641 23456778999999998888742112334444444444455443333221 34 3444443 477888
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+++.... ...+++..|.++||++.|+ .+.+|+.++. .++++|++++++|.++++++
T Consensus 381 v~~~~~~--------~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 381 VTLPDGI--------DSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp EECSTTC--------CHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCC--------CHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 8885321 1457889999999999873 3689998664 48999999999999988664
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=228.48 Aligned_cols=361 Identities=9% Similarity=-0.045 Sum_probs=223.8
Q ss_pred EEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc--------CCCCCC-hHHHHHHHHHHhhcC--
Q 002941 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--------FPENVY-EPALECAELLLQGVG-- 457 (863)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~--------~~~~~~-~~~~eLae~L~~~~p-- 457 (863)
.||.+++ .+.++..|...+.++ ++.+.+++.++.....+.. ...|.. .-..+|.++|+++++
T Consensus 30 ~y~~~~~----p~~~i~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 102 (435)
T 3piu_A 30 PYHEVHN----TNGIIQMGLAENQLC---FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEI 102 (435)
T ss_dssp BCBTTTB----TTSBEECSSCCCCSS---HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcccC----CCCeEEecccccccc---HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 3677777 566667777667765 5888888888766443220 001111 112456666666554
Q ss_pred ------CCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCC
Q 002941 458 ------KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (863)
Q Consensus 458 ------~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~ 531 (863)
.. .+.++|++||++|++.+++.+.+ .| ..|++...+|++.........|..
T Consensus 103 ~~~~~~~~-~~~v~~~~gg~~a~~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~~g~~- 159 (435)
T 3piu_A 103 RGNKVTFD-PNHLVLTAGATSANETFIFCLAD---------PG------------EAVLIPTPYYPGFDRDLKWRTGVE- 159 (435)
T ss_dssp TTTSSCCC-GGGEEEEEHHHHHHHHHHHHHCC---------TT------------CEEEEEESCCTTHHHHTTTTTCCE-
T ss_pred hCCCCCCC-HHHEEEcCChHHHHHHHHHHhcC---------CC------------CeEEECCCccccHHHHHHHhcCCE-
Confidence 11 36899999999999999987721 12 578888888887644322111100
Q ss_pred CCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcC
Q 002941 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (863)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (863)
+..++.... ..|. -| .+.+++.+++.
T Consensus 160 ---------------------------~~~~~~~~~-----------------~~~~--~d--------~~~l~~~l~~~ 185 (435)
T 3piu_A 160 ---------------------------IVPIHCTSS-----------------NGFQ--IT--------ETALEEAYQEA 185 (435)
T ss_dssp ---------------------------EEEEECCGG-----------------GTSC--CC--------HHHHHHHHHHH
T ss_pred ---------------------------EEEeeCCCc-----------------cCCc--CC--------HHHHHHHHHHH
Confidence 011111100 0000 11 13444554320
Q ss_pred CCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCC---------
Q 002941 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCV--------- 681 (863)
Q Consensus 612 i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~--------- 681 (863)
.....++.+|++++. +++.|.+ .+.+.+++|.++|++||++||+||+|+++++.|..+. ...++..
T Consensus 186 --~~~~~~~~~v~i~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 261 (435)
T 3piu_A 186 --EKRNLRVKGVLVTNP-SNPLGTT-MTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 261 (435)
T ss_dssp --HHTTCCEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CG
T ss_pred --HhcCCCeEEEEEcCC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCC
Confidence 012236777777765 8888864 5677899999999999999999999999877776433 2222211
Q ss_pred Cc----EEEeccccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHH
Q 002941 682 PD----IACYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIP 754 (863)
Q Consensus 682 PD----ivt~sKgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~ 754 (863)
+| +.+++|++| +| +++|++++ ++++.+.+.. +..++..++++++++.++|+..+- ++..++.++
T Consensus 262 ~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 332 (435)
T 3piu_A 262 WQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--------MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHK 332 (435)
T ss_dssp GGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH--------HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHH--------HhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44 558899998 88 89999999 6778777653 334556788888888888763210 112223333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCE
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNV 825 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~ 825 (863)
..+..++.+ .+.+.+.. +..+++.| +++.+++.... . ........++++.|+++ ||++.|. .+.
T Consensus 333 ~~~~~~~~l----~~~L~~~g-~~~~~~~~g~~~~~~l~~~~-~-~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~ 405 (435)
T 3piu_A 333 RLKQRQKKL----VSGLQKSG-ISCLNGNAGLFCWVDMRHLL-R-SNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGW 405 (435)
T ss_dssp HHHHHHHHH----HHHHHTTT-CEECCCCSSSEEEEECGGGS-S-SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTE
T ss_pred HHHHHHHHH----HHHHHhcC-CcccCCCeeEEEEEEccccc-c-cCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCE
Confidence 333333333 33344443 33445555 88889887532 0 01111356788888877 9999873 378
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+|+.++.. ++++|++++++|.++++++.
T Consensus 406 iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 406 FRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp EEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 99987544 99999999999999987764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=221.67 Aligned_cols=330 Identities=9% Similarity=-0.025 Sum_probs=221.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
+++|+.++. ..++ .+|.|.+|+.+++.....+....+..+...++++.+.+..+.. ..++++|+++|++|++.++
T Consensus 24 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~ 99 (376)
T 3ezs_A 24 RGLDLGIGE--PQFE--TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFP 99 (376)
T ss_dssp CCCBCSSCC--CCSC--CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHH
T ss_pred CEEEeCCCC--CCCC--CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHH
Confidence 478888765 3455 4799999999888544333222223456667777776655531 1478999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+...+ . ++ ..+|++...+||+....+...+..
T Consensus 100 ~~~~~-----~---~~-----------gd~vl~~~p~~~~~~~~~~~~g~~----------------------------- 131 (376)
T 3ezs_A 100 SFVLF-----D---YQ-----------NPTIAYPNPFYQIYEGAAKFIKAK----------------------------- 131 (376)
T ss_dssp HHHTT-----T---CS-----------SCEEEEEESCCTHHHHHHHHTTCE-----------------------------
T ss_pred HHHcC-----C---CC-----------CCEEEEecCCcHhHHHHHHHcCCE-----------------------------
Confidence 87721 1 00 157999999999875543322110
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..++..... .++. .+++.+.. +..+.+++.| ++.+|.+.
T Consensus 132 ~~~~~~~~~~-----------------~~~~-------------~l~~~~~~-------~~~~v~~~~p--~nptG~~~- 171 (376)
T 3ezs_A 132 SLLMPLTKEN-----------------DFTP-------------SLNEKELQ-------EVDLVILNSP--NNPTGRTL- 171 (376)
T ss_dssp EEEEECCGGG-----------------TSCC-------------CCCHHHHH-------HCSEEEECSS--CTTTCCCC-
T ss_pred EEEcccCCCC-----------------Ccch-------------hHHhhhcc-------CCCEEEEcCC--CCCcCCCC-
Confidence 0011111000 0000 11222321 1223444456 78888655
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhh---------hcCCCCcEEEeccccC-CCCCCceeeeccHHHH
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD---------LLGCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e---------~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
+.+.+++|.++|++||++||+||+|++|++.|...... .++....+.+++|.+| .| +++|+++++++++
T Consensus 172 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 250 (376)
T 3ezs_A 172 SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLL 250 (376)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcc-ceeEEEeeCHHHH
Confidence 77789999999999999999999999998877544332 3455556778999996 77 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
+.+.. ..+..+++.++++++++.++|+. .+..+++++..+..++.+.+. +. . +. ....|.++.
T Consensus 251 ~~~~~------~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~----l~--~-~~-~~~~~~~~~ 313 (376)
T 3ezs_A 251 EKYKA------FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKI----FK--N-TL-IYPYSFYVY 313 (376)
T ss_dssp HHHHH------HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHH----ST--T-CC-CCSBSSEEE
T ss_pred HHHHH------HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHH----hc--C-CC-CCCcceEEE
Confidence 98864 23456788999999999999884 334455555555555544333 32 2 22 556788888
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+++. . ...+++.|++ +||++.|. .+.+|+.++ .+++++++++++|.+++++
T Consensus 314 ~~~~--~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 314 LPVQ--N---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp EECS--C---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC
T ss_pred EECC--C---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 8875 2 4568888887 89999873 378999755 4999999999999988754
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=215.14 Aligned_cols=320 Identities=11% Similarity=0.054 Sum_probs=221.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +.++ .+|+|.+|+.++++.+.. ++++...+|.++|+++++.. .+.++|++||++|++.+++
T Consensus 33 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 33 KITKLSSNE--NPLG--TSKKVAAIQANSSVETEI-----YPDGWASSLRKEVADFYQLE-EEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CCEECSSCS--CTTC--CCHHHHHHHHTCBSCCCB-----C----CHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEccCCC--CCCC--CCHHHHHHHHHHHHHhhc-----CCCcchHHHHHHHHHHhCCC-hhhEEEeCCHHHHHHHHHH
Confidence 788988753 3555 479999999987654322 33445578889999888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
..++ .| .+|++...+||+....+...+.. +
T Consensus 103 ~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~~-----------------------------~ 132 (363)
T 3ffh_A 103 VLLD---------TT------------TNTVMATPTFVQYRQNALIEGAE-----------------------------V 132 (363)
T ss_dssp HHCS---------TT------------CEEEEEESSCHHHHHHHHHHTCE-----------------------------E
T ss_pred HHcc---------CC------------CEEEEcCCChHHHHHHHHHcCCE-----------------------------E
Confidence 7621 12 57999999999865443322110 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ .-| .+.+++.+. +++.+|+++.. ++..|.+. |
T Consensus 133 ~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~-~ 173 (363)
T 3ffh_A 133 REIPLLQDG---------------------EHD--------LEGMLNAID--------EKTTIVWICNP-NNPTGNYI-E 173 (363)
T ss_dssp EEEECCTTS---------------------CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC---------------------CcC--------HHHHHHhcc--------cCCCEEEEeCC-CCCcCCCc-C
Confidence 111111000 011 244555552 24666777665 88899765 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCc----EEEeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+.+.++.+.|++ |+++|+||+|++|++ |...........+| +.+++|.++ .| +++|++++++++++.+...
T Consensus 174 ~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~ 250 (363)
T 3ffh_A 174 LADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIV 250 (363)
T ss_dssp HHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHHh
Confidence 5556666666666 999999999999887 76544433333344 457899998 78 8999999999999988752
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+|+.++++++++.++|+ +.++.++.++..+.+++.+.+ .+++++.+..+++.|.++.+++..+
T Consensus 251 --------~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~----~l~~~~g~~~~~~~~~~~~~~~~~~ 315 (363)
T 3ffh_A 251 --------RPPFNTTSIGQKLAIEAIK---DQAFIGECRTSNANGIKQYEA----FAKRFEKVKLYPANGNFVLIDLGIE 315 (363)
T ss_dssp --------CCSCCCBHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHH----HHHHCTTCEECCCCSSEEEEECSSC
T ss_pred --------CCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHH----HHhhCCCceECCCCCeEEEEECCCC
Confidence 2478899999999999997 335556666666666665543 3445445555677888888887532
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
...+.+.|.++||++++. ++.+|+.++ +++++++++++|+++
T Consensus 316 ----------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 316 ----------AGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp ----------HHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 567889999999999984 378999854 999999999999875
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-21 Score=215.29 Aligned_cols=344 Identities=10% Similarity=-0.011 Sum_probs=224.8
Q ss_pred CCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCCh
Q 002941 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (863)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SG 470 (863)
+|+ +++|+.+|.. .+| .+|.+.+|+.+++++.. .+....+..+...++++.+.+..+.. ..+.++|+++|
T Consensus 28 ~g~----~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 28 EGI----DVCSFSAGEP--DFN--TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TTC----CCEECCCSSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred cCC----CEEECCCCCC--CCC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 566 7899988754 455 47999999999987532 11111122344555666665443311 13689999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.+++.+++ +| .+|++...+||+....+. ..|..
T Consensus 100 ~~a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~-~~g~~-------------------- 137 (388)
T 1j32_A 100 KQSIFNLMLAMIE---------PG------------DEVIIPAPFWVSYPEMVK-LAEGT-------------------- 137 (388)
T ss_dssp HHHHHHHHHHHCC---------TT------------CEEEEESSCCTHHHHHHH-HTTCE--------------------
T ss_pred HHHHHHHHHHhcC---------CC------------CEEEEcCCCChhHHHHHH-HcCCE--------------------
Confidence 9999999987621 12 579999999998654322 11100
Q ss_pred CcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
+..++.... ..+ ..| .+.+++.+. .++.+|++++. +
T Consensus 138 --------~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~ 173 (388)
T 1j32_A 138 --------PVILPTTVE-----------------TQF--KVS--------PEQIRQAIT--------PKTKLLVFNTP-S 173 (388)
T ss_dssp --------EEEECCCGG-----------------GTT--CCC--------HHHHHHHCC--------TTEEEEEEESS-C
T ss_pred --------EEEecCCcc-----------------cCC--CCC--------HHHHHHhcC--------cCceEEEEeCC-C
Confidence 011111100 000 011 244555553 24677777775 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc----chhh--hcCCCCcEEEeccccC-CCCCCceeeec
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD--LLGCVPDIACYGKLLT-GGVIPLAATLA 703 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~----~a~e--~~gv~PDivt~sKgLg-gG~~Pigav~~ 703 (863)
+..|.+. |++.+++|.++|++||+++|+||++++|.+.|.. ..+. .++..+++.+++|.++ .| +++|++++
T Consensus 174 nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~ 251 (388)
T 1j32_A 174 NPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAG 251 (388)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEEC
T ss_pred CCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc-cceEEEEe
Confidence 8888764 6889999999999999999999999998776642 2222 1445566778999997 77 89999999
Q ss_pred cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
++++++.+.. ....++++.++++++++.++|+.. .++.+++.+..+..++.+.+ .+++.|.+.-+...
T Consensus 252 ~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~L~~~~g~~~~~~~ 319 (388)
T 1j32_A 252 PVPLVKAATK------IQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLD----ALNAMPGLECPKPD 319 (388)
T ss_dssp CHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHH----HHHTCTTCBCCCCC
T ss_pred CHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHH----HHhhCCCCcccCCC
Confidence 9999888764 234567888999999999998743 33445555555555554433 34445443333333
Q ss_pred -ceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 784 -GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 784 -Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
|.++.+.+.... ....++.+.|++ +||++.+. .+.+|+.++ ++++++++++++|.++++++
T Consensus 320 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 320 GAFYMFPSIAKTG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGGT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCC-------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 445555554210 014578888886 79999874 378999864 68999999999999887653
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=218.56 Aligned_cols=345 Identities=11% Similarity=0.003 Sum_probs=220.0
Q ss_pred cCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhc----CCC-CC-CeE
Q 002941 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV----GKG-WA-SRA 464 (863)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~----p~~-~~-~~v 464 (863)
.+|+ +++|+.+|.. .+| .+|.|.+|+.+++++.... .+. .....+|.+.|++++ +.. .. +.+
T Consensus 34 ~~g~----~~idl~~g~~--~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v 102 (412)
T 2x5d_A 34 RRGE----DIIDLSMGNP--DGP--TPPHIVEKLCTVAQREDTH---GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEA 102 (412)
T ss_dssp HTTC----CCEECSSCCC--CSC--CCHHHHHHHHHTC------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSE
T ss_pred hcCC----CEEecCCCCC--CCC--CCHHHHHHHHHHHhCCCCC---CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCE
Confidence 3566 8999988763 455 4799999999988654211 111 122334555555544 521 13 489
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCC
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~ 544 (863)
+|+++|++|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 103 ~~t~g~~~a~~~~~~~~~~---------~g------------d~Vl~~~p~~~~~~~~~~~~g~-~-------------- 146 (412)
T 2x5d_A 103 IVTIGSKEGLAHLMLATLD---------HG------------DTILVPNPSYPIHIYGAVIAGA-Q-------------- 146 (412)
T ss_dssp EEESCHHHHHHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHHHTC-E--------------
T ss_pred EEcCChHHHHHHHHHHhCC---------CC------------CEEEEcCCCchhHHHHHHHcCC-E--------------
Confidence 9999999999999987620 11 5799999999997654432210 0
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..++... .+ .... ..+.+++.+. ++..+.++
T Consensus 147 --------------~~~~~~~~------------------------~~--~~~~-d~~~l~~~i~-------~~~~~v~l 178 (412)
T 2x5d_A 147 --------------VRSVPLVP------------------------GI--DFFN-ELERAIRESI-------PKPRMMIL 178 (412)
T ss_dssp --------------EEEEECST------------------------TS--CHHH-HHHHHHHTEE-------SCCSEEEE
T ss_pred --------------EEEeecCC------------------------cc--CCCC-CHHHHHHhcc-------cCceEEEE
Confidence 00111110 00 0000 0234444442 22223444
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhh----cCCCCcEEEeccccC-CCCCCc
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADL----LGCVPDIACYGKLLT-GGVIPL 698 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~----~gv~PDivt~sKgLg-gG~~Pi 698 (863)
..| ++..|.+ .+.+++++|.++|++||+++|+||+|++|.+.|. ...... .+....+.+++|.++ +| +++
T Consensus 179 ~~p--~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~ 254 (412)
T 2x5d_A 179 GFP--SNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG-WRI 254 (412)
T ss_dssp ESS--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT-SCC
T ss_pred CCC--CCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc-cce
Confidence 466 6778865 5789999999999999999999999999877664 222222 233334558899998 78 799
Q ss_pred eeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 699 AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 699 gav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
|++++++++++.+.. ..+..+++.++++++++.++|+.. +++.+++.+..+..++.+.+.+.+. ...
T Consensus 255 G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--g~~--- 321 (412)
T 2x5d_A 255 GFMVGNPELVSALAR------IKSYHDYGTFTPLQVAAIAALEGD--QQCVRDIARQYQQRRDVLVKGLREA--GWM--- 321 (412)
T ss_dssp EEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHHH--TCC---
T ss_pred EEEEcCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC--CCE---
Confidence 999999999988764 124457889999999999998854 2445566666666666665554432 222
Q ss_pred Eeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 779 RVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 779 ~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+++. |+++.+++...- .......++..|++ +||++.+. .+.+|+.++. +++++++++++|.++
T Consensus 322 ~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 322 VENPKASMYVWAKIPEPY-----AHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAM 394 (412)
T ss_dssp CCCCSBSSEEEEECCTTT-----GGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ecCCCeeeEEEEEcCCcc-----CCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 23344 667778875320 00014568888875 69999874 3789998765 899999999999999
Q ss_pred HHHHHH
Q 002941 850 LEEFDK 855 (863)
Q Consensus 850 l~~l~~ 855 (863)
++++..
T Consensus 395 l~~~~~ 400 (412)
T 2x5d_A 395 FRADGL 400 (412)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 987653
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=218.96 Aligned_cols=332 Identities=14% Similarity=0.080 Sum_probs=220.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
.++|+.+|.. .++ .+|.+.+|+.+++++.. .+.. ....+|.++|+++++.+ .+.++|++||++|++.++
T Consensus 26 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~-----~y~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFP--SNP--PPPFLLEAVRRALGRQD-----QYAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSC--SSC--CCHHHHHHHHHHTTTSC-----SCCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCC--CCC--CCHHHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHH
Confidence 5788887654 345 47999999999987621 1222 23568889999988743 367999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+.++. .| .+|++...+||+....+ ...|. .
T Consensus 96 ~~~~~---------~g------------d~Vl~~~~~~~~~~~~~-~~~g~----------------------------~ 125 (381)
T 1v2d_A 96 QSLVG---------PG------------DEVVVLEPFFDVYLPDA-FLAGA----------------------------K 125 (381)
T ss_dssp HHHCC---------TT------------CEEEEEESCCTTHHHHH-HHTTC----------------------------E
T ss_pred HHhCC---------CC------------CEEEEcCCCchhHHHHH-HHcCC----------------------------E
Confidence 87721 11 57999999999975432 11110 0
Q ss_pred eeeecCc---chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 559 KWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 559 ~~~~~~P---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++.+ ..+ ..| .+.+++.+. .++.+|+++.. ++..|.
T Consensus 126 ~~~v~~~~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG~ 167 (381)
T 1v2d_A 126 ARLVRLDLTPEGF---------------------RLD--------LSALEKALT--------PRTRALLLNTP-MNPTGL 167 (381)
T ss_dssp EEEEECEEETTEE---------------------ECC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred EEEEeCCCCCccC---------------------CcC--------HHHHHHhcC--------cCCEEEEECCC-CCCCCC
Confidence 1111111 000 011 133333331 35677787776 888887
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhh--hcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhh
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTAD--LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e--~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
+ .|.+++++|.++|++||+++|+||++++|.. |. ..... .++..+++.+++|.++ .| +++|++++++++++.+
T Consensus 168 ~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 244 (381)
T 1v2d_A 168 V-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRL 244 (381)
T ss_dssp C-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHH
T ss_pred c-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 6 4679999999999999999999999998844 43 11111 3466677788999997 67 8999999999998887
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIE 790 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~ie 790 (863)
... .+..+++.++++++++.++|+.....++.+++.+..+..++.+.+.+.+ .+ +.-+.. .|.++.++
T Consensus 245 ~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~ 313 (381)
T 1v2d_A 245 AGM------RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA----MG-LRVYVPEGTYFLMAE 313 (381)
T ss_dssp HHH------HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH----TT-CCEECCSBSSEEEEE
T ss_pred HHH------HhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH----CC-CEecCCCcceEEEEe
Confidence 641 2345778899999999999986521233455555555556555444433 22 222222 36677777
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
+... . +...|.++||++.+. .+.+|+.++. +++++++++++|.++++++++..
T Consensus 314 ~~~~-----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~~ 375 (381)
T 1v2d_A 314 LPGW-----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREAE 375 (381)
T ss_dssp CTTC-----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-------
T ss_pred cChH-----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccccc
Confidence 6421 1 556678999999874 3689998664 99999999999999988776543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-21 Score=213.52 Aligned_cols=323 Identities=14% Similarity=0.048 Sum_probs=217.1
Q ss_pred EeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh------cCCCCCCeEEEeCChhhHHH
Q 002941 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG------VGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 402 lD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~------~p~~~~~~v~f~~SGSeAvE 475 (863)
+|+.++.. .+| .+|++.+|+.+++++..... ..+......+|.++|+++ .+.. .+.++|+++|++|++
T Consensus 33 idl~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN--PYP--PSEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC--CSC--CCHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred eeccCCCC--CCC--CCHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 67776553 466 47999999999998742211 122232234666777666 3422 368999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| .+|++...+||+....+...+. .
T Consensus 107 ~~~~~l~~---------~g------------d~Vl~~~~~y~~~~~~~~~~g~-~------------------------- 139 (369)
T 3cq5_A 107 QLLQAFGG---------PG------------RTALGFQPSYSMHPILAKGTHT-E------------------------- 139 (369)
T ss_dssp HHHHHHCS---------TT------------CEEEEEESSCTHHHHHHHHTTC-E-------------------------
T ss_pred HHHHHhcC---------CC------------CEEEEcCCChHHHHHHHHHcCC-E-------------------------
Confidence 99987621 12 5799999999987654322210 0
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
+..++....+ ..| .+.+++.+.+ .++.+|++++. ++..|.
T Consensus 140 ---~~~v~~~~~~---------------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~ 179 (369)
T 3cq5_A 140 ---FIAVSRGADF---------------------RID--------MDVALEEIRA-------KQPDIVFVTTP-NNPTGD 179 (369)
T ss_dssp ---EEEEECCTTS---------------------SCC--------HHHHHHHHHH-------HCCSEEEEESS-CTTTCC
T ss_pred ---EEEecCCcCC---------------------CCC--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCC
Confidence 0111111000 011 2445555642 13567778886 899998
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcC-CCCcEEEeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG-CVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~g-v~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
+.+ .+++.++|+.+++++|+||+|++|++....+.. +.++ ...++.+++|+++ +| +++|++++++++++.+.
T Consensus 180 ~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~ 254 (369)
T 3cq5_A 180 VTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVM 254 (369)
T ss_dssp CCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHH
T ss_pred CCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHH
Confidence 775 567778888888999999999988654333332 3344 4456678999998 78 89999999999998887
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEc
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~ 792 (863)
.. ..+|+.++++++++.++|+. .++.++..+..+..++.+.+.+.+ .+ +..+++.|.++.+++.
T Consensus 255 ~~--------~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~ 318 (369)
T 3cq5_A 255 LV--------RLPYHLSALSQAAAIVALRH---SADTLGTVEKLSVERVRVAARLEE----LG-YAVVPSESNFVFFGDF 318 (369)
T ss_dssp TT--------SCTTCSCHHHHHHHHHHHHT---HHHHHTHHHHHHHHHHHHHHHHHH----HT-CEEECCSSSEEEEECC
T ss_pred Hc--------CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeEEEEECC
Confidence 52 23567899999999999874 334555565555666655444433 12 3334667888888775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEec--CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. ...+.+.|.++||++.+. .+.+|+.++ +++++++++++|+++++
T Consensus 319 -~~---------~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 319 -SD---------QHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -SS---------HHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred -CC---------HHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 11 456888899999999986 478999865 78999999999988753
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=216.61 Aligned_cols=343 Identities=15% Similarity=0.032 Sum_probs=222.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCC-CCCe-EEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASR-AYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~-~~~~-v~f~~SGSeAvE~ 476 (863)
.++|+.++.. .+| .+|++.+|+.+++++.... .......+...++++.+.+..+.. ..++ ++++++|++|++.
T Consensus 27 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 27 DVISLGIGEP--DFD--TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SCEECCCCSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEecCCCCC--CCC--CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 5788877653 455 4799999999999763211 111122344455555555433521 1367 9999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+.+ .| .+|++...+||+....+... |..
T Consensus 103 ~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~~~~-g~~-------------------------- 134 (389)
T 1gd9_A 103 GLSAFLK---------DG------------EEVLIPTPAFVSYAPAVILA-GGK-------------------------- 134 (389)
T ss_dssp HHTTTCC---------TT------------CEEEEEESCCTTHHHHHHHH-TCE--------------------------
T ss_pred HHHHhCC---------CC------------CEEEEcCCCchhHHHHHHHC-CCE--------------------------
Confidence 9987620 11 57999999999975433221 100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.... ..+ .-| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 135 --~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG~~ 176 (389)
T 1gd9_A 135 --PVEVPTYEE-----------------DEF--RLN--------VDELKKYVT--------DKTRALIINSP-CNPTGAV 176 (389)
T ss_dssp --EEEEECCGG-----------------GTT--CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeccCCc-----------------cCC--CCC--------HHHHHHhcC--------cCceEEEEECC-CCCCCcC
Confidence 011111100 000 001 244555553 24667777765 8888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc-CC-CCcE--EEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GC-VPDI--ACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv-~PDi--vt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
.+.+.+++|.++|++||+++|+||+++++.+.|. ......+ +. ..|+ .+++|+++ .| +++|++++++++++.
T Consensus 177 -~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (389)
T 1gd9_A 177 -LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIER 254 (389)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHH
Confidence 5788999999999999999999999999877765 3333333 22 3454 47899997 77 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIE 790 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ie 790 (863)
+.. ..+..+++.++++++++.++|+..++.++.+++.+..+..++.+.+.+.+. ....+. ...|.++.++
T Consensus 255 l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~~~~ 324 (389)
T 1gd9_A 255 MVK------FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM--GLPTVK--PKGAFYIFPR 324 (389)
T ss_dssp HHH------HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCCC--CCBTTEECCB
T ss_pred HHH------HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc--CCeecC--CCeeeEEEEe
Confidence 764 134567888999999999988754332245566666666666555444332 222211 2235666666
Q ss_pred EccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.... ....++.+.|+ ++||++.+. .+.+|+.++ .+++++++++++|.+++++.
T Consensus 325 ~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 325 IRDTG-------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp CGGGT-------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 65311 01457888888 899999874 368999865 38999999999999888654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-21 Score=213.40 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=217.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++.. .++ .+|+|.+|+.+++++.+... ..+.++...+|.++|+++++.. .+.++|+++|++|++.+++
T Consensus 27 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~lr~~la~~~g~~-~~~i~~t~g~~~al~~~~~ 100 (360)
T 3hdo_A 27 SWIKLNTNEN--PYP--PSPEVVKAILEELGPDGAAL-RIYPSASSQKLREVAGELYGFD-PSWIIMANGSDEVLNNLIR 100 (360)
T ss_dssp TSEECSSCCC--SSC--CCHHHHHHHHHHHTTTCGGG-GSCCCSSCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceeeccCCCC--CCC--CCHHHHHHHHHHHhcccchh-hcCCCCchHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHHH
Confidence 7899887543 454 58999999999998742111 1223333468888888888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ .| .+|++...+||+....+...+.. +
T Consensus 101 ~l~~---------~g------------d~Vl~~~p~~~~~~~~~~~~g~~-----------------------------~ 130 (360)
T 3hdo_A 101 AFAA---------EG------------EEIGYVHPSYSYYGTLAEVQGAR-----------------------------V 130 (360)
T ss_dssp HHCC---------TT------------CEEEEESSSCTHHHHHHHHHTCE-----------------------------E
T ss_pred HHhC---------CC------------CEEEEcCCChHHHHHHHHHCCCE-----------------------------E
Confidence 6621 12 57999999999875443322110 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ + + +++...... + +.++..| ++..|.+.+
T Consensus 131 ~~v~~~~~~-----------------------~-----------~----~~l~~~~~~-~-~v~i~~p--~nptG~~~~- 167 (360)
T 3hdo_A 131 RTFGLTGDF-----------------------R-----------I----AGFPERYEG-K-VFFLTTP--NAPLGPSFP- 167 (360)
T ss_dssp EEECBCTTS-----------------------S-----------B----TTCCSSBCS-S-EEEEESS--CTTTCCCCC-
T ss_pred EEeeCCCCC-----------------------C-----------H----HHHHhhcCC-C-EEEEeCC--CCCCCCCcC-
Confidence 011111000 0 0 111111122 2 4455555 788998887
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCccc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLK 718 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~ 718 (863)
.++++++|+++|+++|+||+|++|+..+.....+.++....+.+++|.++ +| +++|++++++++++.+..
T Consensus 168 ---~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~----- 238 (360)
T 3hdo_A 168 ---LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-MRIGLAIARPEVIAALDK----- 238 (360)
T ss_dssp ---HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-SCCEEEECCHHHHHHHHH-----
T ss_pred ---HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-cceeeEeeCHHHHHHHHH-----
Confidence 67899999999999999999998854433333344444455668899997 67 899999999999998874
Q ss_pred eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC
Q 002941 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 719 ~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~ 798 (863)
...+++.++++++++.++|+. .++.++..+..+..++.+.+.+ .++ .+..+++.|.++.+.+....
T Consensus 239 ---~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L----~~~-~~~~~~~~~~~~~~~~~~~~--- 304 (360)
T 3hdo_A 239 ---IRDHYNLDRLAQAACVAALRD---QAYLSECCRRIRETREWFTTEL----RSI-GYDVIPSQGNYLFATPPDRD--- 304 (360)
T ss_dssp ---HSCSCCSCHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHH----HHT-TCEECCCSSSEEEEECTTCC---
T ss_pred ---hCCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHH----HHC-CCEEcCCCccEEEEECCCCC---
Confidence 224578999999999999983 4455566666666666554443 333 33445678888888765322
Q ss_pred CCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 799 ~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...+.+.|.++||++++++ +.+|+.. .+++++|+++++|++.-+
T Consensus 305 ------~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 305 ------GKRVYDGLYARKVLVRHFSDPLLAHGMRISI---GTREEMEQTLAALKEIGE 353 (360)
T ss_dssp ------HHHHHHHHHHTTEECBCCCSTTTTTSEEEEC---CCHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHCCEEEEECCCCCCCCEEEEEc---CCHHHHHHHHHHHHHHhc
Confidence 5678889999999998753 7899974 389999999998887653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=224.67 Aligned_cols=355 Identities=10% Similarity=-0.011 Sum_probs=228.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc--cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
.++|+..|.. .++ .+|.|.+|+.+++++.. ++....+..+...++++.+.+..+.+ ..+.++++++|++|++.
T Consensus 58 ~~i~l~~g~~--~~~--~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 58 ELINLGQGFF--SYS--PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCEECCCCSC--SSC--CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred CeEEccCCCC--CCC--CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 7899988764 344 47999999999987622 11111123345566666666555422 12579999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.++. .| .+||+...+||+....+...+. .
T Consensus 134 ~~~~l~~---------~g------------d~Vlv~~p~y~~~~~~~~~~g~-~-------------------------- 165 (447)
T 3b46_A 134 CLMGLLN---------AG------------DEVIVFEPFFDQYIPNIELCGG-K-------------------------- 165 (447)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTC-E--------------------------
T ss_pred HHHHHcC---------CC------------CEEEEeCCCchhHHHHHHHcCC-E--------------------------
Confidence 9987621 12 5799999999986543322211 0
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++......... + ... ...+ ..| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 166 --~~~v~~~~~~~~~~---~-~~~---~~~~--~~d--------~~~l~~~l~--------~~~~~v~l~~p-~nptG~~ 217 (447)
T 3b46_A 166 --VVYVPINPPKELDQ---R-NTR---GEEW--TID--------FEQFEKAIT--------SKTKAVIINTP-HNPIGKV 217 (447)
T ss_dssp --EEEEEEECCGGGGT---S-CBC---STTS--EEC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEEeCCCcccccc---c-ccc---ccCc--ccC--------HHHHHHhhc--------cCCeEEEEeCC-CCCCCcc
Confidence 00011000000000 0 000 0000 011 133433331 35677777775 8888976
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---chh--hhcCCCCcEEEeccccC-CCCCCceeeec-cHHHHH
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA--DLLGCVPDIACYGKLLT-GGVIPLAATLA-TNAVFD 709 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---~a~--e~~gv~PDivt~sKgLg-gG~~Pigav~~-~~~i~~ 709 (863)
.+++++++|.++|++||+++|+||++++|++.|.. ... ..++..+++.++||.++ .| +++|++++ ++++++
T Consensus 218 -~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~ 295 (447)
T 3b46_A 218 -FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAELLS 295 (447)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHHHHH
T ss_pred -cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHHHHH
Confidence 46899999999999999999999999998777632 222 23566677779999998 78 89999999 999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
.+.. ..+..+|+.++++++++.++|+....+++.+++++..+..++.+.+.+.+. ..+. .....|.++.+
T Consensus 296 ~l~~------~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~g~~~~~ 365 (447)
T 3b46_A 296 YAAK------AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL--GLPY--TAPEGTYFVLV 365 (447)
T ss_dssp HHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TCCE--ECCSBSSEEEE
T ss_pred HHHH------HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCee--cCCCeeEEEEE
Confidence 8764 124567888999999999999876445556666776777777665554432 2221 12445788888
Q ss_pred EEccCCcCCCCc-------hHHHHHHHHHHH-HCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYG-------SLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~-------~~~~~~l~~~l~-e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++.....+.... .....+++..|. ++||++.|. .+.+|+.++ .++++|++++++|.+
T Consensus 366 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 366 DFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp ECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred ecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 886421000000 013457888776 589999864 478999865 489999999998865
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=218.96 Aligned_cols=343 Identities=14% Similarity=0.053 Sum_probs=218.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+++|+.++.. .++ .+|.+.+|+ +++++... ........+...++++.+....+.+ ..+.+++++||++|++.+
T Consensus 44 ~~i~l~~~~~--~~~--~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~ 118 (409)
T 2gb3_A 44 RIHHLNIGQP--DLK--TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFS 118 (409)
T ss_dssp EEEECSSCCC--CSC--CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEeccCCCC--CCC--CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHH
Confidence 8899887654 455 368999999 88865321 1111112344455555555433211 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ .| .+|++...+||+....+... |..
T Consensus 119 ~~~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~-g~~--------------------------- 149 (409)
T 2gb3_A 119 FAVIAN---------PG------------DEILVLEPFYANYNAFAKIA-GVK--------------------------- 149 (409)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTHHHHHHHHH-TCE---------------------------
T ss_pred HHHhCC---------CC------------CEEEEcCCCchhHHHHHHHc-CCE---------------------------
Confidence 987620 12 57999999999875533221 100
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+..++.... ..+.. .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 150 -~~~v~~~~~-----------------~~~~~-----------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~- 190 (409)
T 2gb3_A 150 -LIPVTRRME-----------------EGFAI-----------PQNLESFIN--------ERTKGIVLSNP-CNPTGVV- 190 (409)
T ss_dssp -EEEEECCGG-----------------GTSCC-----------CTTGGGGCC--------TTEEEEEEESS-CTTTCCC-
T ss_pred -EEEeccCCC-----------------CCCcc-----------HHHHHHhhC--------cCCeEEEECCC-CCCCCCC-
Confidence 001111100 00000 011222221 25677777775 8888875
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEE--EeccccC-CCCCCceeeeccH-HHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATN-AVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--t~sKgLg-gG~~Pigav~~~~-~i~~~l~ 712 (863)
+|++++++|.++|++||++||+||+++++++.|..... ..++ ..|++ +++|.++ +| +++|++++++ ++++.+.
T Consensus 191 ~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~ 268 (409)
T 2gb3_A 191 YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACG-ARVGCLITRNEELISHAM 268 (409)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCcc-ceEEEEEECcHHHHHHHH
Confidence 46799999999999999999999999998777754433 2233 34765 6799998 77 7999999998 9988876
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEc
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~ 792 (863)
.. ...++ +.++++++++.++|+.. .++.+++.+..+..++.+.+.+.+. ....+. ....|.++.+.+.
T Consensus 269 ~~------~~~~~-~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~~~~~~~~~ 336 (409)
T 2gb3_A 269 KL------AQGRL-APPLLEQIGSVGLLNLD--DSFFDFVRETYRERVETVLKKLEEH--GLKRFT-KPSGAFYITAELP 336 (409)
T ss_dssp HH------HHHSC-CCCHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHHHHHT--TCCCBC-CCSBSSEEEEECS
T ss_pred HH------HhccC-CCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHc--Cceeee-CCCeeEEEEEEeC
Confidence 41 23344 78999999999988642 3445555665666666554444332 222201 1234667777775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHC------CcEEEec----------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLRED------GVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~------GV~~~p~----------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~ 856 (863)
.. ...++.+.|+++ ||++.+. .+.+|+.++ ++++++++++++|.++++++.
T Consensus 337 ~~---------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~-- 403 (409)
T 2gb3_A 337 VE---------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC-- 403 (409)
T ss_dssp SS---------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH--
T ss_pred CC---------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh--
Confidence 21 146788889887 9999874 368999866 899999999999999987653
Q ss_pred HHhhhcC
Q 002941 857 EEKLKSC 863 (863)
Q Consensus 857 ~~~~~~~ 863 (863)
....+|
T Consensus 404 -~~~~~~ 409 (409)
T 2gb3_A 404 -SSRISC 409 (409)
T ss_dssp -C-----
T ss_pred -hcccCC
Confidence 567777
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=218.76 Aligned_cols=347 Identities=8% Similarity=-0.032 Sum_probs=227.7
Q ss_pred eEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC--CCC-e
Q 002941 387 FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WAS-R 463 (863)
Q Consensus 387 ~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~--~~~-~ 463 (863)
..++|.+|+ ++||+.+|. ..++ .+|.|.+|+.++++....+....+..+...++++.|.+..+.. ..+ .
T Consensus 22 ~~~~~~~g~----~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~ 93 (396)
T 3jtx_A 22 QGISAPEGM----EAVPLHIGE--PKHP--TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNE 93 (396)
T ss_dssp TTCCCCTTC----CCEECSCCS--CCSC--CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTS
T ss_pred HhhhhccCC----CeEEeCCcC--CCCC--CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCe
Confidence 445677888 899999876 3344 4799999999998755443322234566777888887655421 135 8
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccC
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~ 543 (863)
++|+++|++|++.+++.+.+ .| +. ..+.+|++...+||+....+...+..
T Consensus 94 i~~t~g~~~al~~~~~~~~~-----~g---~~--------~~~d~vl~~~p~~~~~~~~~~~~g~~-------------- 143 (396)
T 3jtx_A 94 ILPVLGSREALFSFVQTVLN-----PV---SD--------GIKPAIVSPNPFYQIYEGATLLGGGE-------------- 143 (396)
T ss_dssp EEEESSHHHHHHHHHHHHCC-----C--------------CCCCEEEEEESCCHHHHHHHHHTTCE--------------
T ss_pred EEEcCCcHHHHHHHHHHHhC-----CC---Cc--------cCCCEEEEcCCCcHhHHHHHHHcCCE--------------
Confidence 99999999999999987721 11 00 00157999999999876543332110
Q ss_pred CCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 002941 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (863)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv 623 (863)
+..++.+.. .+ .-| .+.+++.+.. ++.+|
T Consensus 144 ---------------~~~v~~~~~------------------g~--~~d--------~~~l~~~~~~--------~~~~v 172 (396)
T 3jtx_A 144 ---------------IHFANCPAP------------------SF--NPD--------WRSISEEVWK--------RTKLV 172 (396)
T ss_dssp ---------------EEEEECCTT------------------TC--CCC--------GGGSCHHHHH--------TEEEE
T ss_pred ---------------EEEeecCCC------------------CC--ccC--------HHHHHHhhcc--------CcEEE
Confidence 011111100 00 001 1223344431 34555
Q ss_pred EEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC-Ccchhhh--------cCCCCcEEEeccccC-C
Q 002941 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADL--------LGCVPDIACYGKLLT-G 693 (863)
Q Consensus 624 IvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG-~~~a~e~--------~gv~PDivt~sKgLg-g 693 (863)
+++.. ++..|.+. +.+.+++|.++|++||+++|+||+|++|.+.| ....... ++..+++.++||+++ .
T Consensus 173 ~l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (396)
T 3jtx_A 173 FVCSP-NNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP 250 (396)
T ss_dssp EEESS-CTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG
T ss_pred EEECC-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc
Confidence 55443 78888755 66679999999999999999999999998887 4433321 455566778999865 5
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +++|++++++++++.+.. ..+..+++.++++++++.++|+. +++.++.++..+..++.+. +.+.+
T Consensus 251 G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~----~~l~~ 316 (396)
T 3jtx_A 251 G-LRSGFVAGDAELLKNFLL------YRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQEKFERVI----PILQQ 316 (396)
T ss_dssp G-GCCEEEEECHHHHHHHHH------HHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHH----HHHTT
T ss_pred c-cceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHH----HHHHh
Confidence 6 899999999999998864 23456788999999999999873 3444555555555555443 33444
Q ss_pred CCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------------CCEEEEecCCCCcHHHH
Q 002941 774 HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 774 ~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------------g~~lr~~ppl~~t~eei 839 (863)
...+.. ...|+++.+++.... ...++..|+ ++||++.|. .+.+|+.+. .+++++
T Consensus 317 ~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~--~~~~~i 384 (396)
T 3jtx_A 317 VFDVKL-PDASFYIWLKVPDGD---------DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALV--ADVATC 384 (396)
T ss_dssp TSCCCC-CSSSSEEEEECTTSC---------HHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECC--SCHHHH
T ss_pred cCCccC-CCeeEEEEEECCCCC---------HHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEc--CCHHHH
Confidence 322222 234778888886422 456777785 569999873 268999754 399999
Q ss_pred HHHHHHHHHHH
Q 002941 840 SQLLLKLYQRL 850 (863)
Q Consensus 840 d~~v~~L~~~l 850 (863)
++++++|.+++
T Consensus 385 ~~~l~~l~~~l 395 (396)
T 3jtx_A 385 VKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=216.81 Aligned_cols=324 Identities=14% Similarity=0.023 Sum_probs=212.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+++|+.++.. .+|+ +|.+.+|+.+++++... ........+...++++.+....+.+ ..+.++++++|++|++.+
T Consensus 30 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~ 105 (370)
T 2z61_A 30 KVIHLEIGEP--DFNT--PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFA 105 (370)
T ss_dssp CCEECCCCSC--SSCC--CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHH
Confidence 7888887654 5665 69999999999876321 1111122334445555554432211 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ .| .+|++...+||+....+...+.
T Consensus 106 ~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~----------------------------- 135 (370)
T 2z61_A 106 LSSIID---------DG------------DEVLIQNPCYPCYKNFIRFLGA----------------------------- 135 (370)
T ss_dssp HHHHCC---------TT------------CEEEEESSCCTHHHHHHHHTTC-----------------------------
T ss_pred HHHhcC---------CC------------CEEEEeCCCchhHHHHHHHcCC-----------------------------
Confidence 997621 12 5799999999997554322110
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
..+.+| .| .+.+++.+. +++.+|+++.. ++..|.+.
T Consensus 136 --~~~~v~-------------------------~d--------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~ 171 (370)
T 2z61_A 136 --KPVFCD-------------------------FT--------VESLEEALS--------DKTKAIIINSP-SNPLGEVI 171 (370)
T ss_dssp --EEEEEC-------------------------SS--------HHHHHHHCC--------SSEEEEEEESS-CTTTCCCC
T ss_pred --EEEEeC-------------------------CC--------HHHHHHhcc--------cCceEEEEcCC-CCCcCccc
Confidence 001111 01 134555553 24666777665 88889877
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCC-CcE--EEeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCV-PDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~-PDi--vt~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
+.+ |.++|++||+++|+||+|+++.+.|.......+ +.. .|+ .+++|.++ .| +++|++++++++++.+.
T Consensus 172 ~~~-----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (370)
T 2z61_A 172 DRE-----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAIL 245 (370)
T ss_dssp CHH-----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CHH-----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHH
Confidence 633 999999999999999999988776654333333 122 243 47899997 77 79999999999998876
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEE
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIEL 791 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel 791 (863)
. ..+..+++.++++++++.++|+.+. +++.+++.+..+..++.+.+.+.+. .... +.. .|.++.+++
T Consensus 246 ~------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~ 313 (370)
T 2z61_A 246 K------LQQNLFISAPTISQYAALKAFEKET-EREINSMIKEFDRRRRLVLKYVKDF--GWEV---NNPIGAYYVFPNI 313 (370)
T ss_dssp H------HHHHHTSSSCHHHHHHHGGGGSHHH-HHHHHHHHHHHHHHHHHHHHHHHHT--TCBC---CCCCBTTEECCBC
T ss_pred H------HHhhcccCCCHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHc--CCee---cCCCcceEEEEec
Confidence 4 2345677899999999988887521 3334455555555555554443332 2221 222 356666666
Q ss_pred ccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. . ...+.+.|+ ++||++.+. .+.+|+.++ ++++++++++++|.++++
T Consensus 314 ~~-~---------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 314 GE-D---------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp SS-C---------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred CC-C---------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 43 1 456888887 789999874 368999876 699999999999988764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=216.87 Aligned_cols=342 Identities=12% Similarity=0.016 Sum_probs=220.4
Q ss_pred cCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCC
Q 002941 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (863)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~S 469 (863)
.+|+ +|+|+.+|.. .++. +|+|.+|+.+++++.... .......+...++++.+.+..+.+ ..+.++|+++
T Consensus 28 ~~g~----~~i~l~~g~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g 99 (391)
T 3h14_A 28 EAGR----RIIHMEVGQP--GTGA--PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG 99 (391)
T ss_dssp HTTC----CCEECCCSSC--SSCS--CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred hcCC----CeEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence 3567 8999998764 3443 699999999998753211 111112344455555555433311 1468999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 470 GSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
|++|++.+++...+ .| .+|++...+||+....+...+. .
T Consensus 100 ~~~al~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~-~------------------- 138 (391)
T 3h14_A 100 SSGGFLLAFTALFD---------SG------------DRVGIGAPGYPSYRQILRALGL-V------------------- 138 (391)
T ss_dssp HHHHHHHHHHHHCC---------TT------------CEEEEEESCCHHHHHHHHHTTC-E-------------------
T ss_pred hHHHHHHHHHHhcC---------CC------------CEEEEcCCCCccHHHHHHHcCC-E-------------------
Confidence 99999999987621 12 5799999999987543322110 0
Q ss_pred CCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 002941 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPVi 629 (863)
+..++..... .| .-| .+ .|++ . ++.+|+++..
T Consensus 139 ---------~~~v~~~~~~-----------------~~--~~d--------~~----~l~~----~---~~~~v~i~~p- 170 (391)
T 3h14_A 139 ---------PVDLPTAPEN-----------------RL--QPV--------PA----DFAG----L---DLAGLMVASP- 170 (391)
T ss_dssp ---------EEEEECCGGG-----------------TT--SCC--------HH----HHTT----S---CCSEEEEESS-
T ss_pred ---------EEEeecCccc-----------------CC--CCC--------HH----HHHh----c---CCeEEEECCC-
Confidence 0011111000 00 001 11 2332 1 3445566554
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc-CCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
++..|.+. |.+.+++|.++|++||+++|+||+|++|++.|.......+ +....+.+++|.++ .| +++|++++++++
T Consensus 171 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 248 (391)
T 3h14_A 171 ANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG-WRVGWMVVPEDQ 248 (391)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SCCEEEECCGGG
T ss_pred CCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc-ceeEEEEeCHHH
Confidence 88888755 6777999999999999999999999999887753332222 22222337899998 78 899999999999
Q ss_pred HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eE
Q 002941 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TL 786 (863)
Q Consensus 708 ~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~ 786 (863)
++.+.. .....+++.++++++++.++|+ ..++.++..+..+.+++.+.+.+ .+++.+..+++.| ++
T Consensus 249 ~~~~~~------~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~ 315 (391)
T 3h14_A 249 VRVVER------IAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERL----PKAGFTRIAPPDGAFY 315 (391)
T ss_dssp HHHHHH------HHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHH----HHHTCCCBCCCCBTTE
T ss_pred HHHHHH------HHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHH----HHcCCCcccCCCeeEE
Confidence 988764 2355678899999999999887 44556666666666666554443 3334433334444 66
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+++.... .....+...|+++ ||++.++ .+.+|+.++. +++++++++++|.+++++..
T Consensus 316 ~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 316 VYADVSDLT-------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp EEEECTTTC-------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCccC-------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 777775321 0256788888875 9999873 2589997654 88999999999999887654
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=218.86 Aligned_cols=347 Identities=12% Similarity=0.032 Sum_probs=228.1
Q ss_pred EcCCCcccceEEeeecccccc--cCCCCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcC-----CCCCC
Q 002941 391 QDQKNKFIGQQFDACASWWTQ--GPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVG-----KGWAS 462 (863)
Q Consensus 391 D~dG~~~~~~ylD~~sg~~~~--~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p-----~~~~~ 462 (863)
+.+|+ .++|+..|.... .+. .+|.|.+|+.+++++.... .| ......+|.++|+++++ .. .+
T Consensus 50 ~~~~~----~~i~l~~g~~~~~g~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~~~~~-~~ 119 (427)
T 3dyd_A 50 PNPNK----TMISLSIGDPTVFGNLP--TDPEVTQAMKDALDSGKYN---GYAPSIGFLSSREEIASYYHCPEAPLE-AK 119 (427)
T ss_dssp CCTTS----CCEECCCSCTTTTSSSC--CCHHHHHHHHHHHHHCCSS---SCCCTTCCHHHHHHHHHHHCBTTBCCC-GG
T ss_pred ccCCC----CEEeCCCcCCCccCCCC--CCHHHHHHHHHHHhcCcCC---CCCCCCCcHHHHHHHHHHHhhcCCCCC-hH
Confidence 34556 899999887443 232 5799999999999874221 12 22334567777777665 12 46
Q ss_pred eEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 463 ~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
+++|+++|++|++.+++.+.+ .| .+|++...+|++....+...+..
T Consensus 120 ~v~~t~g~t~al~~~~~~l~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~------------- 165 (427)
T 3dyd_A 120 DVILTSGCSQAIDLCLAVLAN---------PG------------QNILVPRPGFSLYKTLAESMGIE------------- 165 (427)
T ss_dssp GEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEEESCCTHHHHHHHHTTCE-------------
T ss_pred HEEEecCcHHHHHHHHHHhcC---------CC------------CEEEEcCCCchhHHHHHHHcCCE-------------
Confidence 899999999999999998721 12 57999999999875443322110
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
+..+++.... .+ .-| .+.+++.+. ....+.
T Consensus 166 ----------------~~~~~~~~~~-----------------~~--~~d--------~~~l~~~l~-------~~~~~v 195 (427)
T 3dyd_A 166 ----------------VKLYNLLPEK-----------------SW--EID--------LKQLEYLID-------EKTACL 195 (427)
T ss_dssp ----------------EEEEEEEGGG-----------------TT--EEC--------HHHHHSSCC-------TTEEEE
T ss_pred ----------------EEEEeccccc-----------------CC--CCC--------HHHHHHHhc-------cCCCEE
Confidence 0011110000 00 001 133333331 233344
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCcEE---EeccccC-CCCCC
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIP 697 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---t~sKgLg-gG~~P 697 (863)
+|+.| ++..|. +++++.+++|.++|++||+++|+||+|++|++.|..+ ....++..++++ +++|.++ .| ++
T Consensus 196 ~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~r 271 (427)
T 3dyd_A 196 IVNNP--SNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WR 271 (427)
T ss_dssp EEESS--CTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GC
T ss_pred EEECC--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cc
Confidence 55555 788996 4578889999999999999999999999999888643 556667677777 8899864 56 89
Q ss_pred ceeeecc-------HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 698 LAATLAT-------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 698 igav~~~-------~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
+|+++++ +++++.+.. ....+++.++++++++.++|+... .++.++..+..+..++.+. +.
T Consensus 272 iG~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~~a~~~~L~~~~-~~~~~~~~~~~~~~~~~l~----~~ 339 (427)
T 3dyd_A 272 LGWILIHDRRDIFGNEIRDGLVK-------LSQRILGPCTIVQGALKSILCRTP-GEFYHNTLSFLKSNADLCY----GA 339 (427)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-------HHHHHCCSCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHH----HH
T ss_pred eEEEEecCcchhhHHHHHHHHHH-------HHhccCCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH----HH
Confidence 9999987 577777653 123468899999999999998643 3444555555555555443 34
Q ss_pred HhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHH
Q 002941 771 ISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 771 ~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v 843 (863)
+++.|.+..+.. .|+++.+.+........ ....+++..|+ ++||++.|. .+.+|+.. .+++++|++++
T Consensus 340 L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~---~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l 414 (427)
T 3dyd_A 340 LAAIPGLRPVRPSGAMYLMVGIEMEHFPEF---ENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEAC 414 (427)
T ss_dssp HHHSTTEEEECCSBTTEEEEEECGGGCTTC---SSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHH
T ss_pred HhcCCCceecCCCeeEEEEEecCHhhcCCC---CCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHH
Confidence 445666665544 45677777753210000 12456777775 899999985 37899874 58999999999
Q ss_pred HHHHHHHHH
Q 002941 844 LKLYQRLEE 852 (863)
Q Consensus 844 ~~L~~~l~~ 852 (863)
++|.+++++
T Consensus 415 ~~l~~~l~~ 423 (427)
T 3dyd_A 415 SRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=213.14 Aligned_cols=342 Identities=10% Similarity=-0.033 Sum_probs=222.7
Q ss_pred eEEeeecccccc-cCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~-~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ 476 (863)
+++|+.++..+. .++ .+|++.+|+.+++++... +....+..+...++++.+.+..+.+ ..+.++|+++|++|++.
T Consensus 39 ~~i~l~~~~~~~~~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~ 116 (406)
T 1xi9_A 39 KVIRLNIGDPVKFDFQ--PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQL 116 (406)
T ss_dssp CCEECCCCCGGGTTCC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred CEEEecCCCCCcCCCC--CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHH
Confidence 789998876643 566 369999999999876421 1111112344555555555433211 13689999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+.+ .| .+|++...+||+....+... |..
T Consensus 117 ~~~~l~~---------~g------------d~Vl~~~~~~~~~~~~~~~~-g~~-------------------------- 148 (406)
T 1xi9_A 117 IFGALLD---------PG------------DEILVPGPSYPPYTGLVKFY-GGK-------------------------- 148 (406)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCHHHHHHHHHT-TCE--------------------------
T ss_pred HHHHhCC---------CC------------CEEEEcCCCCccHHHHHHHc-CCE--------------------------
Confidence 9987621 12 57999999999865443221 100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.... ..+ .-| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 149 --~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~i~~p-~nptG~~ 190 (406)
T 1xi9_A 149 --PVEYRTIEE-----------------EDW--QPD--------IDDIRKKIT--------DRTKAIAVINP-NNPTGAL 190 (406)
T ss_dssp --EEEEEEEGG-----------------GTS--EEC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeecCCC-----------------cCC--cCC--------HHHHHHhhC--------cCceEEEEECC-CCCCCCC
Confidence 001111000 000 001 244555553 24677777775 8888965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCC--cEE--EeccccC-CCCCCceeee--ccH----
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--DIA--CYGKLLT-GGVIPLAATL--ATN---- 705 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P--Div--t~sKgLg-gG~~Pigav~--~~~---- 705 (863)
.+++++++|.++|++||+++|+||++++|++.+.......++ .+ |++ +++|.++ .| +++|+++ +++
T Consensus 191 -~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 267 (406)
T 1xi9_A 191 -YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVMNGLSKVYFATG-WRLGYMYFVDPENKLS 267 (406)
T ss_dssp -CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSCEEEEEESTTTTCCGG-GCCEEEEEECTTCTTH
T ss_pred -cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCceEEEEeccccccCCCc-cEEEEEEEecCchhHH
Confidence 578899999999999999999999999987644444555554 22 444 5799997 67 8999999 898
Q ss_pred HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-c
Q 002941 706 AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-G 784 (863)
Q Consensus 706 ~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-G 784 (863)
++++.+... .... ++.++++++++.++|+.. .++.+++.+..+..++.+.+ .+.+.|.+..+.+. |
T Consensus 268 ~l~~~l~~~------~~~~-~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~----~L~~~~~~~~~~~~~~ 334 (406)
T 1xi9_A 268 EVREAIDRL------ARIR-LCPNTPAQFAAIAGLTGP--MDYLKEYMKKLKERRDYIYK----RLNEIPGISTTKPQGA 334 (406)
T ss_dssp HHHHHHHHH------HHHT-CCSCSHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHH----HHHTSTTEECCCCCBS
T ss_pred HHHHHHHHH------HHhh-cCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHH----HHHhCCCCeeecCCee
Confidence 998887641 1112 678899999999999743 22345555555555554433 34455555444444 4
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.++.+.+.... . ....++.+.|+ ++||++.+. .+.+|+.++ ++++++++++++|.++++++
T Consensus 335 ~~~~~~~~~~~---~---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 335 FYIFPKIEVGP---W---KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp SEECCEECSCS---C---SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCccC---C---CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 55556665310 0 01456888887 899999874 478999875 89999999999999988764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-21 Score=215.25 Aligned_cols=343 Identities=12% Similarity=0.011 Sum_probs=219.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~ 476 (863)
.++|+.+|.. .+| .+|.+.+|+.+++++. .......+..+...++++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 26 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~ 101 (411)
T 2o0r_A 26 GAVNLGQGFP--DED--GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411)
T ss_dssp TCEESSCSSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred CeeeccCcCC--CCC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence 4788877643 455 4799999999999862 111111112344455555555443421 135 89999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+.+ .| .+|++...+||+....+. ..|..
T Consensus 102 ~~~~~~~---------~g------------d~Vl~~~~~y~~~~~~~~-~~g~~-------------------------- 133 (411)
T 2o0r_A 102 AVLGLVE---------PG------------SEVLLIEPFYDSYSPVVA-MAGAH-------------------------- 133 (411)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCTTHHHHHH-HTTCE--------------------------
T ss_pred HHHHhcC---------CC------------CEEEEeCCCcHhHHHHHH-HcCCE--------------------------
Confidence 9987621 12 579999999999654322 11100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++..... ..+ ..| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 134 --~~~v~~~~~~----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~l~~~-~nptG~~ 176 (411)
T 2o0r_A 134 --RVTVPLVPDG----------------RGF--ALD--------ADALRRAVT--------PRTRALIINSP-HNPTGAV 176 (411)
T ss_dssp --EEEEECEEET----------------TEE--ECC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeeccccc----------------cCC--CCC--------HHHHHHhhc--------cCceEEEEeCC-CCCCCCC
Confidence 0111111000 000 011 244555552 25677777775 8888965
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhh----cCCCCcEEEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
+|.+++++|.++|++||++||+||+|++|++.|.. ..... .+....+.+++|.++ .| +++|++++++++++.
T Consensus 177 -~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (411)
T 2o0r_A 177 -LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAG 254 (411)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHH
Confidence 57889999999999999999999999998777642 22222 233344557899998 78 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIE 790 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ie 790 (863)
+... ....+++.++++++++.++|+.. +++.+++++..+..++.+.+.+.+. .... .....|+++.++
T Consensus 255 l~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~--~~~~~g~~~~~~ 322 (411)
T 2o0r_A 255 VRAA------KQYLSYVGGAPFQPAVALALDTE--DAWVAALRNSLRARRDRLAAGLTEI--GFAV--HDSYGTYFLCAD 322 (411)
T ss_dssp HHHH------HHHHTSCCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHH--TCEE--CCCCBSSEEEEE
T ss_pred HHHH------HhhccCCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHc--CCEe--cCCCeeEEEEEe
Confidence 7641 23456778889999999999864 4445566666666666665554432 2211 112346788888
Q ss_pred EccCCcCCCCchHHHHHHHHHHH-HCCcEEEec------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.... . . ...++...|+ ++||++.+. .+.+|+.+. .+++++++++++|.++++
T Consensus 323 ~~~~~-~--~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~ 394 (411)
T 2o0r_A 323 PRPLG-Y--D---DSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAE 394 (411)
T ss_dssp CGGGT-C--C---CHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC
T ss_pred cCCCC-C--C---CHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 86420 0 0 1456777776 679999863 246898854 489999999999988776
Q ss_pred HH
Q 002941 852 EF 853 (863)
Q Consensus 852 ~l 853 (863)
+.
T Consensus 395 ~~ 396 (411)
T 2o0r_A 395 RP 396 (411)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-20 Score=209.35 Aligned_cols=335 Identities=15% Similarity=0.064 Sum_probs=219.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-cccCCCCCChHHHHHHHHHHhhcCCC-CCC-eEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~p~~-~~~-~v~f~~SGSeAvE~ 476 (863)
.++|+.++.. .+| .+|.+.+|+.+++++.. .+.......+...++++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 31 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP--DFD--GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC--CCC--CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 5788887654 455 47999999999987621 11111112344455555554444421 135 89999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++...+ .| .+|++...+||+....+. ..|..
T Consensus 107 ~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~-~~g~~-------------------------- 138 (386)
T 1u08_A 107 AITALVR---------NG------------DEVICFDPSYDSYAPAIA-LSGGI-------------------------- 138 (386)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCTTHHHHHH-HTTCE--------------------------
T ss_pred HHHHhCC---------CC------------CEEEEeCCCchhHHHHHH-HcCCE--------------------------
Confidence 9987621 12 579999999998654322 11100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
+..++.... .+ ..| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 139 --~~~v~~~~~------------------~~--~~d--------~~~l~~~l~--------~~~~~v~l~~p-~nptG~~ 179 (386)
T 1u08_A 139 --VKRMALQPP------------------HF--RVD--------WQEFAALLS--------ERTRLVILNTP-HNPSATV 179 (386)
T ss_dssp --EEEEECCTT------------------TC--CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeecCcc------------------cC--cCC--------HHHHHHhhc--------ccCEEEEEeCC-CCCCCcc
Confidence 011111100 00 011 234555542 35677777765 8888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCC----cchhh-hcCCCCcEEEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~----~~a~e-~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
.|.+++++|.++|++||+++|+||++++|.+.|. ..... .++....+.+++|.++ .| +++|++++++++++.
T Consensus 180 -~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 257 (386)
T 1u08_A 180 -WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAE 257 (386)
T ss_dssp -CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHH
Confidence 5788999999999999999999999999877664 22222 3455566778999998 78 899999999999988
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~i 789 (863)
+.. ..+..+++.++++++++.++|+.. +++.+++++..+..++.+. +.+.+++ +.-+.. .|.++.+
T Consensus 258 l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~----~~L~~~g-~~~~~~~~g~~~~~ 324 (386)
T 1u08_A 258 IRK------VHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILV----NALNESR-LEILPCEGTYFLLV 324 (386)
T ss_dssp HHH------HHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHH----HHTTSSS-CEECCCCBSSEEEE
T ss_pred HHH------HHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHH----HHHHHCC-CeecCCCceEEEEE
Confidence 764 124457888999999999999864 3455666666666666553 3344443 222223 3678888
Q ss_pred EEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++.... . . ....+.+.|+ ++||++.|. .+.+|+.++ .++++|++++++|.+
T Consensus 325 ~~~~~~-~--~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 325 DYSAVS-T--L---DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp ECTTTC-C--S---CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred ecCCCC-C--C---CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 875420 0 0 1456777776 689999863 268999865 589999999998853
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-20 Score=204.99 Aligned_cols=334 Identities=10% Similarity=-0.038 Sum_probs=214.4
Q ss_pred CCCCcHHHHHHHHHHHHhcccccCC-C-----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 002941 414 DATLQIELARDMGYTAARFGHVMFP-E-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 414 Gh~~~p~V~~Ai~~q~~~~~~~~~~-~-----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~ 487 (863)
|+ .+|++.+|+.+++++....... . ...+...+|.++|+++++....+.++|+++|++|++.+++.+. .++.
T Consensus 33 ~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~-~~~~ 110 (406)
T 1kmj_A 33 AQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWG-NSNV 110 (406)
T ss_dssp CC-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH-HHHC
T ss_pred CC-CCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhh-hhcC
Confidence 44 6899999999999875311100 0 1245578899999999875113689999999999999999873 2211
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcch
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (863)
. . ..+|++...+|||.......+.... + . .+..++.+..
T Consensus 111 ~----~------------gd~vl~~~~~~~~~~~~~~~~~~~~---g---------~-------------~~~~~~~~~~ 149 (406)
T 1kmj_A 111 R----A------------GDNIIISQMEHHANIVPWQMLCARV---G---------A-------------ELRVIPLNPD 149 (406)
T ss_dssp C----T------------TCEEEEETTCCGGGTHHHHHHHHHH---T---------C-------------EEEEECBCTT
T ss_pred C----C------------CCEEEEecccchHHHHHHHHHHHhC---C---------C-------------EEEEEecCCC
Confidence 1 1 1579999999999754321111000 0 0 0011111100
Q ss_pred hhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHH
Q 002941 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (863)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lr 647 (863)
+ ..| .+.+++.+. .++++|+++++ ++..|.+.+ +++|.
T Consensus 150 ~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG~~~~----l~~i~ 187 (406)
T 1kmj_A 150 G---------------------TLQ--------LETLPTLFD--------EKTRLLAITHV-SNVLGTENP----LAEMI 187 (406)
T ss_dssp S---------------------CBC--------GGGHHHHCC--------TTEEEEEEESB-CTTTCCBCC----HHHHH
T ss_pred C---------------------CcC--------HHHHHHHhc--------cCCeEEEEeCC-CccccCcCC----HHHHH
Confidence 0 011 123445542 35788999997 999998876 99999
Q ss_pred HHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccce------
Q 002941 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA------ 719 (863)
Q Consensus 648 elc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~------ 719 (863)
++|++||+++|+||+|+ +|... +....+ .+|++ +++|.+|. ..+|++++++++++.+........
T Consensus 188 ~l~~~~~~~li~D~~~~-~g~~~--~~~~~~--~~d~~~~s~~K~~g~--~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (406)
T 1kmj_A 188 TLAHQHGAKVLVDGAQA-VMHHP--VDVQAL--DCDFYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIATVS 260 (406)
T ss_dssp HHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEEEGGGTTSC--TTCEEEEECHHHHHHCCCSSCSTTSEEEEE
T ss_pred HHHHHcCCEEEEEchhh-cCCCC--Cccccc--CCCEEEEEchhccCC--CCcEEEEEeHHHHhhcCCcccCCCceeecc
Confidence 99999999999999995 44432 223333 47887 47998842 237999999999988753210000
Q ss_pred ---------eecccCCCccHHHHHHHH-HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc--cceEE
Q 002941 720 ---------LLHGHSYSAHALGCAAAA-KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA--LGTLC 787 (863)
Q Consensus 720 ---------~~~~~T~~~~pla~AAal-AaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl~~ 787 (863)
....++++.+++++++++ ++++.+++.. .+++.+..+.+++.+ .+.+++.|.+.-+.. .|.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l----~~~L~~~~~~~~~~~~~~~~~~ 335 (406)
T 1kmj_A 261 LSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQNLMHYA----LSQLESVPDLTLYGPQNRLGVI 335 (406)
T ss_dssp TTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHH----HHHHTTSTTEEEESCTTCCSEE
T ss_pred cccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH----HHHHhcCCCeEEecCCCcCCEE
Confidence 001123445566666555 7888775432 334444444444443 334455555544444 68888
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+.... ...+.+.|.++||++++. .+.+|+.++..+|++++++++++|+++++.+
T Consensus 336 ~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 336 AFNLGKHH---------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp EEEETTCC---------HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCC---------HHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 88774211 456788899999999864 2789999988889999999999999987654
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=211.97 Aligned_cols=359 Identities=11% Similarity=0.047 Sum_probs=224.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc---cccCCCCCChHHHHHHHHHHhhcCCCC-C-CeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~---~~~~~~~~~~~~~eLae~L~~~~p~~~-~-~~v~f~~SGSeAv 474 (863)
.++|+..|. ..++ .+|.|.+|+.+++++.. .+.......+...++++.+.+..+... . +.++|+++|++|+
T Consensus 29 ~~i~l~~g~--~~~~--~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGF--PDFP--PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp CCEECCCSS--CSSC--CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CceEeCCCC--CCCC--CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 567777665 2343 57999999999998632 111111233556667777766544220 1 4799999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.+.+ .| .+|++...+||+....+...+...
T Consensus 105 ~~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~~------------------------ 139 (422)
T 3fvs_A 105 FTAFQALVD---------EG------------DEVIIIEPFFDCYEPMTMMAGGRP------------------------ 139 (422)
T ss_dssp HHHHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTCEE------------------------
T ss_pred HHHHHHHcC---------CC------------CEEEEcCCCchhhHHHHHHcCCEE------------------------
Confidence 999987621 12 579999999999654333221100
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
..++..... ...+.... ...| .-| .+.+++.+. .++.+|+++.. ++..|
T Consensus 140 -----~~~~~~~~~----~~~G~~~~---~~~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p-~nptG 188 (422)
T 3fvs_A 140 -----VFVSLKPGP----IQNGELGS---SSNW--QLD--------PMELAGKFT--------SRTKALVLNTP-NNPLG 188 (422)
T ss_dssp -----EEEECBCCC----CCSSSCCB---GGGS--BCC--------HHHHHTTCC--------TTEEEEEEESS-CTTTC
T ss_pred -----EEEeccccc----cccccccc---ccCC--CCC--------HHHHHhhcC--------CCceEEEECCC-CCCCC
Confidence 001110000 00000000 0000 011 133333331 35677777775 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chhhhc----CCCCcEEEeccccC-CCCCCceeeeccHHHH
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~e~~----gv~PDivt~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
.+. +++.+++|.++|++||+++|+||+|++|++.|.. .....+ +...++.++||.++ .| +++|+++++++++
T Consensus 189 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~ 266 (422)
T 3fvs_A 189 KVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIM 266 (422)
T ss_dssp CCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHH
T ss_pred cCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHH
Confidence 765 7889999999999999999999999999888752 222222 22344557899998 78 8999999999999
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHH-----hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-----FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-----l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
+.+.. ..+..+++.++++++++.++|+. ...+++.+++.+..+..++.+.+ .+.+++........
T Consensus 267 ~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~~g~~~~~~~~ 336 (422)
T 3fvs_A 267 KHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR----SLQSVGLKPIIPQG 336 (422)
T ss_dssp HHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHH----HHHTTTCEEEBCSB
T ss_pred HHHHH------HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH----HHHHcCCeecCCCe
Confidence 88764 23556888999999999999985 12234456666666666665543 34444432234456
Q ss_pred ceEEEEEEccCCcCCC-----CchHHHHHHHHHHH-HCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAG-----YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLK 845 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~-----~~~~~~~~l~~~l~-e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~ 845 (863)
|.++.+++........ .......+++..++ ++||++.|+ .+.+|+. +..++++|++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~i~~~l~~ 414 (422)
T 3fvs_A 337 SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEATLQAMDEK 414 (422)
T ss_dssp SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHHHHHHHHH
T ss_pred eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEE--ecCCHHHHHHHHHH
Confidence 7788888754210000 00001345667655 579999872 2688886 44599999999999
Q ss_pred HHHHHHH
Q 002941 846 LYQRLEE 852 (863)
Q Consensus 846 L~~~l~~ 852 (863)
|.+++++
T Consensus 415 l~~~l~~ 421 (422)
T 3fvs_A 415 LRKWKVE 421 (422)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988754
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=217.00 Aligned_cols=336 Identities=8% Similarity=-0.008 Sum_probs=218.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc--cccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE 475 (863)
+++|+.+|.. .+| .+|.|.+|+.+++++.. .+.......+....+++.+.+..+.+ .. +.++|+++|++|++
T Consensus 48 ~~idl~~g~~--~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~ 123 (404)
T 2o1b_A 48 PLINMAVGIP--DGP--TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLV 123 (404)
T ss_dssp CCEECCCCSC--SSC--CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHH
T ss_pred CEEecCCcCC--CCC--CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHH
Confidence 7999988765 466 37999999999885421 11101122233444444444333632 11 58999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++...+ .| .+|++...+||+....+...+. .
T Consensus 124 ~~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~-~------------------------- 156 (404)
T 2o1b_A 124 AVPTCVIN---------PG------------DYVLLPDPGYTDYLAGVLLADG-K------------------------- 156 (404)
T ss_dssp HHHHHHCC---------TT------------CEEEEEESCCSSHHHHHHHTTC-E-------------------------
T ss_pred HHHHHhcC---------CC------------CEEEEcCCCchhHHHHHHHCCC-E-------------------------
Confidence 99987620 11 5799999999997654432211 0
Q ss_pred cCceeeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 556 YNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 556 ~~~~~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
+..++... .+ ..|. +.+++.+. .++.+|+++.. ++..|
T Consensus 157 ---~~~v~~~~~~~---------------------~~d~--------~~l~~~l~--------~~~~~v~l~~p-~nptG 195 (404)
T 2o1b_A 157 ---PVPLNLEPPHY---------------------LPDW--------SKVDSQII--------DKTKLIYLTYP-NNPTG 195 (404)
T ss_dssp ---EEEEECCTTTC---------------------CCCG--------GGSCHHHH--------HHEEEEEECSS-CTTTC
T ss_pred ---EEEeccCcccC---------------------cCCH--------HHHHHhhc--------cCceEEEEcCC-CCCCC
Confidence 00111110 00 0010 12333342 24667777644 78888
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---chhh-hcCCCCcEEEeccccC-CCCCCceeeeccHHHHH
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---~a~e-~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
.+ .|.+++++|.++|++||+++|+||++++|.+.|.. +... ..+....+.+++|+++ .| +++|++++++++++
T Consensus 196 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 ST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQ 273 (404)
T ss_dssp CC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHH
T ss_pred cc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch-hheEeEecCHHHHH
Confidence 65 57899999999999999999999999998766642 2221 1233344568899997 78 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+.. .....+++.++++++++.++|+.. +++.+++++..+..++.+.+.+. +++ +..+++. |+++.
T Consensus 274 ~l~~------~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~----~~g-~~~~~~~~g~~~~ 340 (404)
T 2o1b_A 274 ALKK------YQTHTNAGMFGALQDAAIYALNHY--DDFLEEQSNVFKTRRDRFEAMLA----KAD-LPFVHAKGGIYVW 340 (404)
T ss_dssp HHHH------HHHHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHH----HTT-CCEECCCBSSEEE
T ss_pred HHHH------HHhhccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHH----hcC-CeecCCCcceEEE
Confidence 8764 124457788999999999999864 44556666666666665544433 332 2233443 56777
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+++.... ...++.+.|+ ++||++.+. .+.+|+.++. +++++++++++|.+++++
T Consensus 341 ~~~~~~~--------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 341 LETPPGY--------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp EECCTTC--------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred EeCCCCC--------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 8875321 1456788877 579999873 3789998764 788999999999887654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=209.37 Aligned_cols=299 Identities=15% Similarity=0.059 Sum_probs=207.5
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccc
Q 002941 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524 (863)
Q Consensus 445 ~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gal 524 (863)
..+|.++|++++..-..+.+++++||++|++.+++...+ .| .+||+...+||+......
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~---------~g------------d~Vl~~~~~~~~~~~~~~ 123 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIE---------PG------------DHVISLYPTYQQLYDIPK 123 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC---------TT------------CEEEEEESSCTHHHHHHH
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcC---------CC------------CEEEEeCCCchhHHHHHH
Confidence 467889999876321146899999999999999987621 12 579999999998643322
Q ss_pred eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHH
Q 002941 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604 (863)
Q Consensus 525 s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 604 (863)
..+. . +..++.+... .|. -| .+.+
T Consensus 124 ~~g~-~----------------------------~~~v~~~~~~-----------------~~~--~d--------~~~l 147 (375)
T 3op7_A 124 SLGA-E----------------------------VDLWQIEEEN-----------------GWL--PD--------LEKL 147 (375)
T ss_dssp HTTC-E----------------------------EEEEEEEGGG-----------------TTE--EC--------HHHH
T ss_pred HcCC-E----------------------------EEEEeccccC-----------------CCC--CC--------HHHH
Confidence 2110 0 0011111000 000 01 2445
Q ss_pred HHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcE
Q 002941 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI 684 (863)
Q Consensus 605 e~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi 684 (863)
++.+. .++.+|++++. ++.+|.. .|++++++|.++|++||++||+||+|++|++.+.....+.++..+++
T Consensus 148 ~~~l~--------~~~~~v~~~~~-~nptG~~-~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~ 217 (375)
T 3op7_A 148 RQLIR--------PTTKMICINNA-NNPTGAV-MDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAV 217 (375)
T ss_dssp HHHCC--------TTCCEEEEESS-CTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEE
T ss_pred HHhhc--------cCCeEEEEcCC-CCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEE
Confidence 55553 35667888886 8999965 47888999999999999999999999998777555556667777888
Q ss_pred EEeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHH
Q 002941 685 ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (863)
Q Consensus 685 vt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l 763 (863)
.++||+++ +| +++|++++++++++.+... .+..+++.++++++++.++|+.. +++.++.++..+..++.+
T Consensus 218 ~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l 288 (375)
T 3op7_A 218 NSLSKTYSLPG-IRIGWVAANHQVTDILRDY------RDYTMICAGVFDDLVAQLALAHY--QEILERNRHILEENLAIL 288 (375)
T ss_dssp EESSSSSSCGG-GCCEEEECCHHHHHHHTTT------GGGTTSCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHH
T ss_pred eEChhhcCCcc-cceEEEEeCHHHHHHHHHH------HhhhccCCCcHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHH
Confidence 89999998 78 8999999999999988752 35567888999999999988853 234455555545555544
Q ss_pred HHHHHHHHhcCCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecC-----CEEEEecCCCCcH
Q 002941 764 DLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLG-----NVIYLMCGPCSSP 836 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g-----~~lr~~ppl~~t~ 836 (863)
.+.+++++.+..++..| .+..+.+.... ....++..| .++||++.|.. +.+|+. +..++
T Consensus 289 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~ 354 (375)
T 3op7_A 289 ----DQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQ 354 (375)
T ss_dssp ----HHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCH
T ss_pred ----HHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCH
Confidence 33445567666565554 45555554321 145677777 58899999853 788885 55667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l 853 (863)
+++++++++|.++++++
T Consensus 355 ~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 355 ETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-21 Score=212.27 Aligned_cols=345 Identities=9% Similarity=-0.018 Sum_probs=212.5
Q ss_pred EEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEe
Q 002941 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (863)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~ 467 (863)
.++|.+++ .+.++...+++.+++| ..++..+ ...+++++|+++++.. +.++|+
T Consensus 5 ~~~~~~~~----~~~~~~~~~~~~~~~h-~~~~~~~--------------------~~~~~~~~l~~~~~~~--~~v~~~ 57 (379)
T 3ke3_A 5 LRQDIDPN----GLLEYSVVYTDRALNH-MSKAFQE--------------------VMNDLLSNLKTVYNAE--AAVIIP 57 (379)
T ss_dssp ---CCSTT----SCCCCCSSCCTTSCCT-TSHHHHH--------------------HHHHHHHHHHHHHTCS--EEEEEE
T ss_pred hhccCCHH----HHHHHHHhccCCCCCC-CCHHHHH--------------------HHHHHHHHHHHHhCCC--CEEEEc
Confidence 46788877 6777777777777777 5565442 2345667777777743 578999
Q ss_pred CChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcc
Q 002941 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (863)
Q Consensus 468 ~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~ 547 (863)
+||++|++++++.+ + .| .+||++..+|||.+...+.......+
T Consensus 58 ~sgt~a~~~~~~~~-~---------~g------------d~vi~~~~~~~~~~~~~~~~~~g~~~--------------- 100 (379)
T 3ke3_A 58 GSGTYGMEAVARQL-T---------ID------------EDCLIIRNGWFSYRWTQILEKGKFAK--------------- 100 (379)
T ss_dssp SCHHHHHHHHHHHH-C---------TT------------CEEEEEECSHHHHHHHHHHHHHCCSS---------------
T ss_pred CChhHHHHHHHHhC-C---------CC------------CeEEEEeCCchhHHHHHHHHHhCCCC---------------
Confidence 99999999988643 1 12 57999999999976544332100000
Q ss_pred cCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 002941 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (863)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP 627 (863)
.+..++.|.... ..+. ..+. ..| .+.+++.+.. .++.+|++..
T Consensus 101 ----------~~~~~~~~~~g~--------~~~~---~~~~-~~d--------~~~l~~~i~~-------~~~~~v~~~~ 143 (379)
T 3ke3_A 101 ----------SSTVLTAERTED--------TEAP---KPFA-PVD--------IETAVAKIKE-------DKSAIVYAPH 143 (379)
T ss_dssp ----------EEEEEECEESSC--------CSSC---CCEE-CCC--------HHHHHHHHHH-------HTCSEEEEES
T ss_pred ----------ceEEEecccccc--------cccc---CCCC-CCC--------HHHHHHHHhh-------cCCcEEEEEe
Confidence 011122211000 0000 0000 011 2456666642 1233455555
Q ss_pred ccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHH
Q 002941 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 628 Viqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i 707 (863)
+ .+..|.+ .|.+++++|.++|++||++||+||+++ | +..+..+.+|+...+.+++|+|+|+ ..+|++++++++
T Consensus 144 ~-~~~~G~~-~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~-~g~g~~~~~~~~ 216 (379)
T 3ke3_A 144 V-ETSSGII-LSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSST-PCAGLVMLSAAA 216 (379)
T ss_dssp E-ETTTTEE-CCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSC-CCEEEEEECHHH
T ss_pred e-cCCCcee-CCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCC-CceEEEEECHHH
Confidence 4 5666754 578899999999999999999999996 4 4567777777644444556999886 578999999999
Q ss_pred HHhhhcCCccceee-----------------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 708 FDSFVGDSKLKALL-----------------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 708 ~~~l~~~~~~~~~~-----------------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
++.+..... ..+. +.++++.++.+++++.++|+++++++ .+++.++.+.+.+++.+.+.+.
T Consensus 217 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g-~~~~~~~~~~l~~~l~~~l~~~ 294 (379)
T 3ke3_A 217 IKKVESTES-NCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIG-FDILRDAQWELGNRVRKVLTDK 294 (379)
T ss_dssp HHHHHTCCC-SCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhcCCC-CceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHc
Confidence 988764210 1111 11234778899999999999886543 3344455555555554444332
Q ss_pred HhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEEecCCCCcHHHH
Q 002941 771 ISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 771 ~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~~ppl~~t~eei 839 (863)
....+..- ...+.+..+..... ...+.+.|.++||++.+. ++.+|++++..+|++||
T Consensus 295 --g~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di 362 (379)
T 3ke3_A 295 --GIESVAAEGFEAPGVVVSYTERD----------DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDI 362 (379)
T ss_dssp --TCCBSBCTTCBCSSEEEEECSCH----------HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCH
T ss_pred --CCEecCCccccCceEEEEccCCc----------chHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHH
Confidence 22221111 11223333333211 122367788999998864 57999999888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFD 854 (863)
Q Consensus 840 d~~v~~L~~~l~~l~ 854 (863)
++++++|+++++++.
T Consensus 363 ~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 363 DGTVERFEKALDEVL 377 (379)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-21 Score=210.80 Aligned_cols=328 Identities=12% Similarity=0.050 Sum_probs=219.6
Q ss_pred CCCCCcHHHHHHHHHHHHhcccccCC---CCC--ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh
Q 002941 413 PDATLQIELARDMGYTAARFGHVMFP---ENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~~~---~~~--~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~ 487 (863)
.|+ .+|+|.+|+.+++.+..+.... .+. .+...+|.++|+++++.+ .+.++|++||++|++.+++.+ + .
T Consensus 25 ~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~-~-~-- 98 (390)
T 1elu_A 25 QGI-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGL-D-W-- 98 (390)
T ss_dssp CCC-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHHHHHHHHS-C-C--
T ss_pred cCC-CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEEEeCChHHHHHHHHhCC-C-C--
Confidence 566 6789999999998875421100 122 256788999999998743 358999999999999999876 1 1
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCcccccee---cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~---t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (863)
. .| .+|++...+||+.......+ .|.. +..++.
T Consensus 99 ~----~g------------d~vl~~~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~ 134 (390)
T 1elu_A 99 H----QG------------DEILLTDCEHPGIIAIVQAIAARFGIT----------------------------YRFFPV 134 (390)
T ss_dssp C----TT------------CEEEEETTCCHHHHHHHHHHHHHHCCE----------------------------EEEECC
T ss_pred C----CC------------CEEEEecCcccHHHHHHHHHHHHhCcE----------------------------EEEEcC
Confidence 0 11 57999999999975432111 1100 011111
Q ss_pred cchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHH
Q 002941 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (863)
Q Consensus 565 P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~ 644 (863)
+... .+ .. + .+.+++.+. +++.+|++++. ++..|.+.+ ++
T Consensus 135 ~~~~-----------------~~--~~---d-----~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----~~ 174 (390)
T 1elu_A 135 AATL-----------------NQ--GD---A-----AAVLANHLG--------PKTRLVILSHL-LWNTGQVLP----LA 174 (390)
T ss_dssp GGGS-----------------SS--SC---H-----HHHHHTTCC--------TTEEEEEEESB-CTTTCCBCC----HH
T ss_pred CCCC-----------------Cc--cc---h-----HHHHHHhcC--------CCceEEEEecc-ccCCceecC----HH
Confidence 1000 00 00 0 133333331 35788899987 899998877 89
Q ss_pred HHHHHHH----HcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhhhcCCc-c
Q 002941 645 ILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGDSK-L 717 (863)
Q Consensus 645 ~Lrelc~----~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l~~~~~-~ 717 (863)
+|.++|+ +||+++|+||+++ +|.... .. ....+|+++ ++|++.|| .++|++++++++++.+..... .
T Consensus 175 ~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~--~~--~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~ 248 (390)
T 1elu_A 175 EIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL--DF--SRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGW 248 (390)
T ss_dssp HHHHHHHHCCSSSCCEEEEECTTT-BTTBCC--CT--TTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCT
T ss_pred HHHHHHhhhhhhcCcEEEEEcccc-cCCcCC--Ch--hhcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccC
Confidence 9999999 9999999999995 665432 11 124579886 89988888 689999999998887653110 0
Q ss_pred c---------ee------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--
Q 002941 718 K---------AL------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-- 780 (863)
Q Consensus 718 ~---------~~------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-- 780 (863)
. .+ ....+.+.++++++++.++++.+++.++.+++.+..+.+++.+.+.+ .+.+.+.-+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~~~g~~~~~~ 324 (390)
T 1elu_A 249 RSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGL----NQLPHVHCLAT 324 (390)
T ss_dssp TTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHSTTEEESCS
T ss_pred CcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HhcCCcEEecC
Confidence 0 00 01112346888899899999988665545556666666666554443 334444333
Q ss_pred -cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 781 -VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 781 -rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++.|.++.+++.... ....+.+.|.++||++++.. +.+|+.++..++++++++++++|++
T Consensus 325 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 325 SAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp SCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred ccccccEEEEEcCCCC--------CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 567889988885321 14568888999999999874 8999998889999999999998865
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-20 Score=206.26 Aligned_cols=333 Identities=13% Similarity=0.060 Sum_probs=211.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+++|+.++.. .+|+ +|.+.+|+.+++++.... .......+...++++.+.+..+.. ..+.++|++||++|++.+
T Consensus 42 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~ 117 (389)
T 1o4s_A 42 DVINLTAGEP--DFPT--PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 117 (389)
T ss_dssp CCEECCCSSC--SSCC--CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHH
Confidence 7889887654 4664 699999999998764211 101112233444455444332421 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ .| .+|++...+||+....+... |..
T Consensus 118 ~~~l~~---------~g------------d~Vl~~~~~~~~~~~~~~~~-g~~--------------------------- 148 (389)
T 1o4s_A 118 FMALLD---------PG------------DEVIVFSPVWVSYIPQIILA-GGT--------------------------- 148 (389)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTTHHHHHHHT-TCE---------------------------
T ss_pred HHHhCC---------CC------------CEEEEcCCCchhHHHHHHHc-CCE---------------------------
Confidence 987621 12 57999999999975433211 100
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+..++.... ..+ .-| .+.+++.+. .++.+|+++.. ++..|.+
T Consensus 149 -~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~- 190 (389)
T 1o4s_A 149 -VNVVETFMS-----------------KNF--QPS--------LEEVEGLLV--------GKTKAVLINSP-NNPTGVV- 190 (389)
T ss_dssp -EEEEECCGG-----------------GTT--CCC--------HHHHHHTCC--------TTEEEEEEESS-CTTTCCC-
T ss_pred -EEEEecCCc-----------------cCC--CCC--------HHHHHHhcc--------cCceEEEEcCC-CCCCCCC-
Confidence 011111100 000 001 234444442 24667777765 8888865
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC--CCcE--EEeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDi--vt~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
+|++++++|.++|++||+++|+||++++|...|.......+.- ..|+ .+++|.++ .| +++|++++++++++.+.
T Consensus 191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~ 269 (389)
T 1o4s_A 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVS 269 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHH
Confidence 5789999999999999999999999998876664333333321 2354 47899997 77 79999999999998876
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEc
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~ 792 (863)
. .....+++.++++++++.++|+.. .+++.+..+..++.+.+.+.+. ....+. ...|.++.+.+.
T Consensus 270 ~------~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~~~~~~ 334 (389)
T 1o4s_A 270 K------IQSHTTSCINTVAQYAALKALEVD-----NSYMVQTFKERKNFVVERLKKM--GVKFVE--PEGAFYLFFKVR 334 (389)
T ss_dssp H------HHHHHTCSCCHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHHHHHHT--TCCCCC--CSBSSEEEEECS
T ss_pred H------HhhhcccCCCHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHhc--CCeeec--CCcceEEEEeCC
Confidence 4 224457888999999888877632 2333444444444443343332 222221 123566667764
Q ss_pred cCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.. ..++.+.|+ ++||++.+. ++.+|+.++ .+++++++++++|.++++
T Consensus 335 -~~---------~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 335 -GD---------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp -SC---------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred -CC---------HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 21 456888887 899999875 268999866 489999999999988764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=210.50 Aligned_cols=215 Identities=11% Similarity=0.029 Sum_probs=147.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhc-------CCCCc----EEE
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-------GCVPD----IAC 686 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~-------gv~PD----ivt 686 (863)
++.+|++... ++..|.+ .+++++++|.++|++||++||+||+|++|++.|..+ ....+ ++.+| +.+
T Consensus 188 ~~~~v~l~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s 265 (428)
T 1iay_A 188 KVKGLILTNP-SNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS 265 (428)
T ss_dssp CEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred ceEEEEEcCC-CCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEec
Confidence 4665555443 7888865 588999999999999999999999999986666432 22222 23478 458
Q ss_pred eccccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHH
Q 002941 687 YGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELW 763 (863)
Q Consensus 687 ~sKgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l 763 (863)
++|++| .| +++|++++ ++++++.+.. ...+++.++++++++.++|+..+ -+++.+++.+..+..++.+
T Consensus 266 ~sK~~g~~G-lr~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 336 (428)
T 1iay_A 266 LSKDMGLPG-FRVGIIYSFNDDVVNCARK--------MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHF 336 (428)
T ss_dssp STTTSSCGG-GCEEEEEESCHHHHHHHHH--------HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCC-ceEEEEEeCCHHHHHHHHH--------HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 899998 78 89999998 7888887763 12346788999998888776321 0113344555555555554
Q ss_pred HHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEecC-------CEEEEecCCCC
Q 002941 764 DLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPLG-------NVIYLMCGPCS 834 (863)
Q Consensus 764 ~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~g-------~~lr~~ppl~~ 834 (863)
.+.+. +.+ +.-+++ .|.++.+++.... . .........+.+.|+++ ||++++.. +.+|+.++ .+
T Consensus 337 ~~~L~----~~g-~~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~ 408 (428)
T 1iay_A 337 TNGLE----VVG-IKCLKNNAGLFCWMDLRPLL-R-ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NM 408 (428)
T ss_dssp HHHHH----HTT-CCBCCCSSSSEEEEECGGGC-S-SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SS
T ss_pred HHHHH----hcC-CcccCCCeeEEEEEechhhc-C-CCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cC
Confidence 44433 232 222344 5788888886431 0 01112345788899886 99999742 58999876 68
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~ 852 (863)
+++++++++++|++++++
T Consensus 409 ~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 409 DDGTVDIALARIRRFVGV 426 (428)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999988753
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-20 Score=209.50 Aligned_cols=348 Identities=10% Similarity=-0.034 Sum_probs=223.4
Q ss_pred EEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-c-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeE
Q 002941 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-H-VMFPENVYEPALECAELLLQGVGKG-WASRA 464 (863)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v 464 (863)
.+++.+|+ .++|+.++.. .++ .+|+|.+|+.+++++.. . +.......+...++++.+....+.. ..+.+
T Consensus 37 ~~~~~~g~----~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 37 NLEKATGT----KFCRMEMGVP--GLP--APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHTC----CCEECCCCSC--CSC--CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHhcCC----CEEeccCcCC--CCC--CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 45566777 8999998764 454 57999999999987522 1 1111111233444444444332211 13689
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc--EEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL--KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~--~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
+|+++|++|++.+++... .+ . .| . +|++...+||+....+...+...
T Consensus 109 ~~t~g~t~al~~~~~~l~-~~--~----~g------------d~~~Vl~~~p~~~~~~~~~~~~g~~~------------ 157 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVAN-RT--H----KN------------REYGTLFIDPGFNLNKLQCRILGQKF------------ 157 (437)
T ss_dssp EEESHHHHHHHHHHHHHT-TS--C----TT------------CSCCEEEEESCCHHHHHHHHHHTCCC------------
T ss_pred EEeCCHHHHHHHHHHHHh-cC--C----CC------------CccEEEEeCCCcHhHHHHHHHcCCEE------------
Confidence 999999999999998762 00 0 12 3 79999999998755443321100
Q ss_pred CCCcccCCCcccccCceeeecC-cchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA 621 (863)
..++. ++.+ .. ..+.+++.++. ++..+
T Consensus 158 -----------------~~v~~~~~~~--------------------------~~---d~~~l~~~l~~------~~~~~ 185 (437)
T 3g0t_A 158 -----------------ESFDLFEYRG--------------------------EK---LREKLESYLQT------GQFCS 185 (437)
T ss_dssp -----------------EEEEGGGGCT--------------------------TH---HHHHHHHHHTT------TCCCE
T ss_pred -----------------EEEeecCCCC--------------------------cc---CHHHHHHHHhc------CCceE
Confidence 01111 0000 00 03556666632 22334
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---------chhhh-cCCCCcEEEecccc
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---------TTADL-LGCVPDIACYGKLL 691 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---------~a~e~-~gv~PDivt~sKgL 691 (863)
.+++.| ++..|.+. +.+.+++|.++|++||++||+||+|++|...+.. ..... .+....+.+++|.+
T Consensus 186 v~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 186 IIYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp EEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred EEEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 456677 78888655 6777999999999999999999999877544321 22221 22223345789999
Q ss_pred C-CCCCCceeeeccHHHHH-h-----------------hhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHh
Q 002941 692 T-GGVIPLAATLATNAVFD-S-----------------FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHN 751 (863)
Q Consensus 692 g-gG~~Pigav~~~~~i~~-~-----------------l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~ 751 (863)
+ .| +++|++++++++++ . +.. .....+++.++++++++.++|+..++ +...++
T Consensus 263 ~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 335 (437)
T 3g0t_A 263 SYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS------ALYALSSGATHSAQWGMAAMLKACNDGEYNFRD 335 (437)
T ss_dssp SCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT------HHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred CCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHH------HHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHH
Confidence 8 78 89999999999988 6 543 22445788999999999999987542 111344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEe-------c-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRV-------V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG 823 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-------r-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g 823 (863)
..+..+..++.+.+ .+.++ .+..+ . ..|.++.+.+.... ...+.+.|.++||++.+..
T Consensus 336 ~~~~~~~~~~~l~~----~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~~~gi~v~~~~ 401 (437)
T 3g0t_A 336 SVIEYGRKARIMKK----MFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMD---------SSKLIEKFVRYGMCAITLK 401 (437)
T ss_dssp HHHHHHHHHHHHHH----HHHTT-TEEESSCEETTEECCSSSEEEEEETTCC---------HHHHHHHHHHTTEECEEST
T ss_pred HHHHHHHHHHHHHH----HHHHc-CCEEeccccCCCCCceeEEEEEecCCCC---------HHHHHHHHHHcCeEEeecc
Confidence 45545555554433 33444 23222 3 56788888886222 5678899999999999864
Q ss_pred -------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 -------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 -------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+|++++ ..+++++++++++|.++++
T Consensus 402 ~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 402 TTGSKRNEAMRICTS-LLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp TTTCCCTTCEEEECS-SSCGGGHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 67999876 4499999999999988764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-20 Score=209.51 Aligned_cols=341 Identities=11% Similarity=0.032 Sum_probs=214.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCC-ChHHHHHHHHHHhhc----CCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~----p~~~~~~v~f~~SGSeA 473 (863)
+++|+.+|. ..++ .+|+|.+|+.++++++.... ...+. .+...+|.++|++++ +.. .+.++|+++|++|
T Consensus 70 ~~i~l~~g~--~~~~--~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~~t~G~~~a 144 (449)
T 3qgu_A 70 KIISLGIGD--TTEP--LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIFISDGSKCD 144 (449)
T ss_dssp CCEECSSCC--CCCC--CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CEEEeeCCC--CCCC--CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEEEccCHHHH
Confidence 789988763 3333 57999999999998764211 11232 233567888888876 322 4689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+ ....+ .| .+|++...+||+....+...+....++. +.+.
T Consensus 145 l~~~-~~l~~---------~g------------d~Vl~~~p~~~~~~~~~~~~g~~g~~~~----------~~~~----- 187 (449)
T 3qgu_A 145 IARI-QMMFG---------SK------------PTVAVQDPSYPVYVDTSVMMGMTGDHNG----------TGFD----- 187 (449)
T ss_dssp HHHH-HHHHC---------SS------------SCEEEEESCCTHHHHHHHHHTCSCCBCS----------SSBT-----
T ss_pred HHHH-HHHhC---------CC------------CEEEEcCCCChhHHHHHHHcCCcccccc----------cccc-----
Confidence 9987 32211 12 5799999999998765554432211110 0000
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++..... .+ .. .+++ . .++.+|+++.. ++..
T Consensus 188 ----~~~~~~~~~~~-----------------~~--~~---------------~~~~-----~-~~~~~v~l~~p-~NPt 222 (449)
T 3qgu_A 188 ----GIEYMVCNPDN-----------------HF--FP---------------DLSK-----A-KRTDIIFFCSP-NNPT 222 (449)
T ss_dssp ----TEEEEECCGGG-----------------TT--CC---------------CGGG-----C-CCCSEEEEESS-CTTT
T ss_pred ----eeEEEeccccc-----------------CC--cC---------------ChhH-----c-CCCCEEEEeCC-CCCC
Confidence 01112211100 00 00 0111 0 23445555554 8888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhc----CCCCcEEEeccccC-CCCCCceeeeccHHH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~----gv~PDivt~sKgLg-gG~~Pigav~~~~~i 707 (863)
|.+ ++.+.+++|.++|++||++||+||+|++|++.|. ......+ ++..++.++||+++ .| +++|++++++++
T Consensus 223 G~~-~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 300 (449)
T 3qgu_A 223 GAA-ATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG-VRLGWTVVPKAL 300 (449)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTC
T ss_pred CCc-CCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc-ceeEEEecCHHH
Confidence 865 4788899999999999999999999999987764 2233332 33345668999998 88 899999999887
Q ss_pred HHh--------hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE
Q 002941 708 FDS--------FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (863)
Q Consensus 708 ~~~--------l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~ 779 (863)
++. +.. .....+++.++++++++.++|+... .++.+++.+..+..++.+.+.+ .+.+ +.-
T Consensus 301 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~ 368 (449)
T 3qgu_A 301 KYANGEPVHADWNR------VMTTCFNGASNIVQAGGLACLQPEG-LKEMNAMIKFYKENAQILKTTF----TEMG-FSV 368 (449)
T ss_dssp BCTTSCBHHHHHHH------HHHHSCCCCCHHHHHHHHHHTSHHH-HHHHHHHHHHHHHHHHHHHHHH----HHTT-CCE
T ss_pred HhhhhhhHHHHHHH------HhhcccCCCCHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHH----HHCC-Cee
Confidence 652 221 1233455789999999999887421 1233444444444555443333 3333 222
Q ss_pred ecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 780 VVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 780 vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.. .|.++.+.+... ...+++..|+++ ||++.|. .+.+|++ +..++++|++++++|.+++
T Consensus 369 ~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 369 YGGDDAPYIWVGFPGK---------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAY 437 (449)
T ss_dssp EESSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred eCCCCeeEEEEECCCC---------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 233 477888877621 145678888876 9999874 3789987 5669999999999999887
Q ss_pred HH
Q 002941 851 EE 852 (863)
Q Consensus 851 ~~ 852 (863)
++
T Consensus 438 ~~ 439 (449)
T 3qgu_A 438 GK 439 (449)
T ss_dssp C-
T ss_pred Hh
Confidence 54
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=203.29 Aligned_cols=347 Identities=12% Similarity=0.004 Sum_probs=216.4
Q ss_pred eEEeeecccccc--cCCCCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhcC------------CCCCCeE
Q 002941 400 QQFDACASWWTQ--GPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGVG------------KGWASRA 464 (863)
Q Consensus 400 ~ylD~~sg~~~~--~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~p------------~~~~~~v 464 (863)
.++|+.+|.... .+. .+|.|.+|+.+++++.... .+. .....+|.+.|+++++ .. .+++
T Consensus 34 ~~i~l~~g~p~~~~~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v 107 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLL--TSAAQIKKLKEAIDSQECN---GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNV 107 (416)
T ss_dssp CCEECCCCCTTTTSCSC--CCHHHHHHHHHHHHTTCSS---SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGE
T ss_pred CeEEecCcCCCcccCCC--CCHHHHHHHHHHhhCCccC---CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceE
Confidence 677887766543 232 6899999999998764211 121 1122344444444433 11 3689
Q ss_pred EEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCC
Q 002941 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 465 ~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~ 544 (863)
+|+++|++|++.+++...+ .| .+|++...+||+....+... |..
T Consensus 108 ~~~~g~~~al~~~~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~-g~~-------------- 151 (416)
T 1bw0_A 108 VLCSGGSHGILMAITAICD---------AG------------DYALVPQPGFPHYETVCKAY-GIG-------------- 151 (416)
T ss_dssp EEESHHHHHHHHHHHHHCC---------TT------------CEEEEEESCCTHHHHHHHHT-TCE--------------
T ss_pred EEeCChHHHHHHHHHHhCC---------CC------------CEEEEcCCCcHhHHHHHHHc-CcE--------------
Confidence 9999999999999987621 12 57999999999975432211 100
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..++.... ..+ ..| .+.+++.+. +...+.++
T Consensus 152 --------------~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~-------~~~~~v~i 183 (416)
T 1bw0_A 152 --------------MHFYNCRPE-----------------NDW--EAD--------LDEIRRLKD-------DKTKLLIV 183 (416)
T ss_dssp --------------EEEEEEEGG-----------------GTT--EEC--------HHHHHHHCC-------TTEEEEEE
T ss_pred --------------EEEeecCcc-----------------cCC--CCC--------HHHHHHHhc-------cCCeEEEE
Confidence 001111000 000 011 244555553 23455677
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-----cchhhhcCCCCcE---EEeccccC-CCC
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-----ETTADLLGCVPDI---ACYGKLLT-GGV 695 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-----~~a~e~~gv~PDi---vt~sKgLg-gG~ 695 (863)
++| ++..|.+ .|++++++|.++|++||++||+||++++|.+.|. ......++..+++ .+++|+++ .|
T Consensus 184 ~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G- 259 (416)
T 1bw0_A 184 TNP--SNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG- 259 (416)
T ss_dssp ESS--CTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-
T ss_pred eCC--CCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC-
Confidence 787 6788865 5789999999999999999999999999876665 2223323323333 37899975 67
Q ss_pred CCceeeeccHH--HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 696 IPLAATLATNA--VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 696 ~Pigav~~~~~--i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+++|+++++++ +++.+.... . ..+..+++.|+++++++.++|+.+. .++.++..+..+..++.+ .+.+.+
T Consensus 260 lr~G~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l----~~~L~~ 331 (416)
T 1bw0_A 260 WRLGWLLYVDPHGNGPSFLEGL--K-RVGMLVCGPCTVVQAALGEALLNTP-QEHLDQIVAKIEESAMYL----YNHIGE 331 (416)
T ss_dssp GCCEEEEEECTTCSCHHHHHHH--H-HHHHHHTCSCHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHH----HHHHTT
T ss_pred ceEEEEEeeCchhhHHHHHHHH--H-HHhccccCCCcHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 89999998763 444332100 0 0123567889999999999998543 344555555555555544 344555
Q ss_pred CCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHH
Q 002941 774 HRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 774 ~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L 846 (863)
.|.+..++. .|.++.+.+........ .....+...|+ ++||+++++ .+.+|+.+ .++++++++++++|
T Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l 406 (416)
T 1bw0_A 332 CIGLAPTMPRGAMYLMSRIDLEKYRDI---KTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERI 406 (416)
T ss_dssp STTEEECCCCBTTEEEEEECGGGBSSC---CSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHH
T ss_pred CCCCcccCCCeeEEEEEeCCHHHcCCC---CCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHH
Confidence 666554444 47777787753210000 01456777775 899999984 36899986 47899999999999
Q ss_pred HHHHHHH
Q 002941 847 YQRLEEF 853 (863)
Q Consensus 847 ~~~l~~l 853 (863)
.+++++.
T Consensus 407 ~~~l~~~ 413 (416)
T 1bw0_A 407 KAFCQRH 413 (416)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=214.10 Aligned_cols=358 Identities=12% Similarity=0.011 Sum_probs=206.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|||+.+++++ +.|.+++.+++..... . -...+...+|.++|+++++ .++++|++||++|++.|++
T Consensus 44 ~ylD~~~~~~~--------~~v~~a~~~~~~~~~~-~--y~~~~~~~~l~~~la~~~~---~~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 44 VYIDLLTDSGT--------NAMSDHQWAAMITGDE-A--YAGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 109 (467)
T ss_dssp CSEECSCSSSC--------CCEEHHHHHHHHTCCC-C--SSSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccCcCC--------HHHHHHHHHHHhhccc-c--cccCccHHHHHHHHHHHcC---CCcEEEcCCcHHHHHHHHH
Confidence 89999876644 5677887777654321 1 1134667899999999997 3689999999999999999
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCc-cCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYH-G~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+++ .++... |+ .+..||.. .+| +.+..++...|...... ..+.
T Consensus 110 ~~~-~~~~~~----Gd---------~~~~viv~--~~~~~~~~~~~~~~g~~~~~~--------------~~~~------ 153 (467)
T 1ax4_A 110 VLL-KYKQKE----GK---------AKNPVFIS--NFHFDTTAAHVELNGCKAINI--------------VTEK------ 153 (467)
T ss_dssp HHH-HHHHHT----TC---------CSSCEEEE--SSCCHHHHHHHHHTTCEEEEC--------------BCGG------
T ss_pred HHH-HhhccC----CC---------ccceEEEe--ccccchhhHHHhccCCceecc--------------cccc------
Confidence 984 332212 21 00115554 555 55555555443211000 0000
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
.++... . ..++...| .+.|++.+.+ .+.+++++|++||+ ++.+|..++
T Consensus 154 ----~~~~~~----------~-----~~~~~~~d--------~~~le~~i~~----~~~~~~~~vi~~~~-~np~gG~~~ 201 (467)
T 1ax4_A 154 ----AFDSET----------Y-----DDWKGDFD--------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPV 201 (467)
T ss_dssp ----GGCTTS----------C-----CTTTTCBC--------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCC
T ss_pred ----cccccc----------c-----CCcccccC--------HHHHHHHHHh----cCCCCeeEEEEecc-ccCCCccCC
Confidence 000000 0 00000012 2456666653 11247899999997 888855788
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeccccc---c-------cccCCcchhhhcC----CCCcEEEe--ccccCCCCCCceeee
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTG---F-------WRLGVETTADLLG----CVPDIACY--GKLLTGGVIPLAATL 702 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TG---f-------GRtG~~~a~e~~g----v~PDivt~--sKgLggG~~Pigav~ 702 (863)
+.+++++|+++|++||++||+||++.. + +..|.... .++ ..+|++++ +|++ | +|+|+++
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~~--g-~~~Gg~~ 276 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK--EVIFDMYKYADALTMSAKKDP--L-LNIGGLV 276 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH--HHHHHHGGGCSEEEEETTSTT--C-CSSCEEE
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchh--hhhhhhccccceEEEeccccC--C-CCcceEE
Confidence 899999999999999999999999742 0 22222110 011 13677654 6655 4 5776655
Q ss_pred -cc-H-HHHHhhhcCCccceeecccCCCccHHHHHHHHH-HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 703 -AT-N-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK-SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 703 -~~-~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalA-aL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
++ + ++++.+..... .+....++++++..+.++.+ +|+.+.+++..++..++.+++.+.| .+ ...+.+.
T Consensus 277 ~~~d~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~--~~~~~~~ 348 (467)
T 1ax4_A 277 AIRDNEEIFTLARQRCV--PMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL----RE--AGIPIQY 348 (467)
T ss_dssp EESSCHHHHHHHHHHHH--HHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----HH--TTCCBCS
T ss_pred EeCCHHHHHHHHHhhcc--ccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----Hh--CCCCccc
Confidence 45 5 78876642100 01122356666655544333 6766555444444445555554433 22 2334333
Q ss_pred EecccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEec-----------C-------CEEEEecC-CCCcHHH
Q 002941 779 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----------G-------NVIYLMCG-PCSSPEV 838 (863)
Q Consensus 779 ~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~-----------g-------~~lr~~pp-l~~t~ee 838 (863)
..+ |.++.+.+..-.............++..| .++||.+.+. | +.+||++| ..+|+++
T Consensus 349 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~ 426 (467)
T 1ax4_A 349 PTG--GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDH 426 (467)
T ss_dssp SCC--SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHH
T ss_pred CCC--ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHH
Confidence 333 44444442110000000011256788888 8999999872 2 68999988 4589999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEFD 854 (863)
Q Consensus 839 id~~v~~L~~~l~~l~ 854 (863)
+++++++|+++++++.
T Consensus 427 i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 427 MDYIADALIGLKEKFA 442 (467)
T ss_dssp HHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887754
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=203.61 Aligned_cols=334 Identities=13% Similarity=0.095 Sum_probs=212.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-----cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-----~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeA 473 (863)
.++|+.+| ...++ .+|.|.+|+.+++++.. .+.......+...++++.+.+..+.+ ..+.++|+++|++|
T Consensus 36 ~~i~l~~~--~~~~~--~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 36 NVYDFSIG--NPSIP--APQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GCEECCSC--CCCSC--CCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CeEEeecC--CCCCC--CCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 78898876 22233 57999999999998732 11111222355666677766554421 14689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
++.+++..++ .|+ .+|++...+||+....+...+..
T Consensus 112 l~~~~~~l~~---------~g~-----------d~vl~~~p~~~~~~~~~~~~g~~------------------------ 147 (398)
T 3ele_A 112 LSICFRALTS---------DAY-----------DEFITIAPYFPEYKVFVNAAGAR------------------------ 147 (398)
T ss_dssp HHHHHHHHCC---------STT-----------CEEEEESSCCTHHHHHHHHTTCE------------------------
T ss_pred HHHHHHHHcC---------CCC-----------CEEEEeCCCchhhHHHHHHcCCE------------------------
Confidence 9999987721 121 57999999999875443322100
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+..++.... .+ .-| .+.+++.+. .++.+|++... ++..
T Consensus 148 -----~~~v~~~~~------------------~~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~npt 185 (398)
T 3ele_A 148 -----LVEVPADTE------------------HF--QID--------FDALEERIN--------AHTRGVIINSP-NNPS 185 (398)
T ss_dssp -----EEEECCCTT------------------TS--SCC--------HHHHHHTCC--------TTEEEEEECSS-CTTT
T ss_pred -----EEEEecCCc------------------CC--cCC--------HHHHHHHhC--------cCCCEEEEcCC-CCCC
Confidence 001111100 00 011 234444442 24566666544 8888
Q ss_pred CceeCCHHHHHHHHHHHHH------cCCeEEEecccccccccCCc--chhhhcCCCCcEEEeccccC-CCCCCceeeecc
Q 002941 634 GMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIACYGKLLT-GGVIPLAATLAT 704 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~------~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~ 704 (863)
|.+. +.+.+++|.++|++ ||+++|+||+|++|++.|.. ...+.++....+.+++|.++ .| +++|+++++
T Consensus 186 G~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~ 263 (398)
T 3ele_A 186 GTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLVP 263 (398)
T ss_dssp CCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT-TCCEEEECC
T ss_pred CCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcc-ceeEEEEEc
Confidence 8755 67779999999999 99999999999999877743 22334444445558899998 88 899999999
Q ss_pred HHHHH------hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 705 NAVFD------SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 705 ~~i~~------~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
+++++ .+... .....+++.++++++++.+.++ +.+..+++.++.+++.+.| .+. + +.
T Consensus 264 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L----~~~----g-~~ 326 (398)
T 3ele_A 264 DEVYDKAELYAAVCGA-----GRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGL----TRI----G-YH 326 (398)
T ss_dssp TTSTTHHHHHHHHHHH-----HHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHH----HHH----T-CC
T ss_pred chhhhHHHHHHHHHHH-----hhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH----HHc----C-Ce
Confidence 87543 22210 0122456777888777766554 3334455555555555433 222 2 12
Q ss_pred Eeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 779 RVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 779 ~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+... |.++.+.+.... ...+.+.|.++||++.+. .+.+|+.. .+++++|++++++|.+++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 327 CFKPDGAFYMFVKALEDD---------SNAFCEKAKEEDVLIVAADGFGCPGWVRISY--CVDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp EECCSBSSEEEEECSSSC---------HHHHHHHHHTTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCeeEEEEEEcCCCC---------HHHHHHHHHHCCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHH
Confidence 22333 555777765322 557888899999999884 37899975 47999999999999998876
Q ss_pred H
Q 002941 853 F 853 (863)
Q Consensus 853 l 853 (863)
+
T Consensus 396 ~ 396 (398)
T 3ele_A 396 Y 396 (398)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=202.17 Aligned_cols=354 Identities=11% Similarity=0.019 Sum_probs=218.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc--ccCCCCCChHHHHHHHHHHhhcCCC-CC-CeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~p~~-~~-~~v~f~~SGSeAvE 475 (863)
..+|+..|. ..++ .+|.|.+|+.+++.+... +.......+...++++.+.+..+.. .. ++++|+++|++|++
T Consensus 24 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 24 SVVNLGQGF--PDIS--PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TSEECSSCC--CCSC--CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CeEEecCCC--CCCC--CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 456666554 2333 479999999999975421 1111112344555666665543321 02 58999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.+++.+.+ .| .+|++...+||+........+...
T Consensus 100 ~~~~~~~~---------~g------------d~vl~~~p~~~~~~~~~~~~g~~~------------------------- 133 (410)
T 3e2y_A 100 NSIQGLVD---------PG------------DEVIIMVPFYDCYEPMVRMAGAVP------------------------- 133 (410)
T ss_dssp HHHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTCEE-------------------------
T ss_pred HHHHHhcC---------CC------------CEEEEeCCCchhhHHHHHHcCCEE-------------------------
Confidence 99987621 12 579999999988654332221100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
..++...... .+ .... ...+ .-| .+.+++.+ ..++.+|+++.. ++.+|.
T Consensus 134 ----~~~~~~~~~~-----~g-~~~~--~~~~--~~d--------~~~l~~~~--------~~~~~~v~~~~p-~nptG~ 182 (410)
T 3e2y_A 134 ----VFIPLRSKPT-----DG-MKWT--SSDW--TFD--------PRELESKF--------SSKTKAIILNTP-HNPLGK 182 (410)
T ss_dssp ----EEEECEECCC-----CS-SCCB--GGGE--ECC--------HHHHHTTC--------CTTEEEEEEESS-CTTTCC
T ss_pred ----EEEecccccc-----cc-cccc--ccCC--cCC--------HHHHHhhc--------CCCceEEEEeCC-CCCCCc
Confidence 0011100000 00 0000 0000 011 13333333 135778888876 899997
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcC----CCCcEEEeccccC-CCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG----CVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~g----v~PDivt~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
+. +++.+++|.++|++||+++|+||+|++|++.|..+ ....+. ...++.++||.++ .| +++|++++++++++
T Consensus 183 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~ 260 (410)
T 3e2y_A 183 VY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIK 260 (410)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHH
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHH
Confidence 65 77889999999999999999999999998887532 333332 2234457899998 78 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHH-----hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-----FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~-----l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
.+.. ..+..+++.++++++++.++|+. ....++.+++.+..+..++.+.+ .+.+++........|
T Consensus 261 ~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~~g~~~~~~~~~ 330 (410)
T 3e2y_A 261 HLQT------VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR----LLNSVGLKPIVPDGG 330 (410)
T ss_dssp HHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH----HHHTTTCEEEBCSBS
T ss_pred HHHH------HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH----HHHHCCCeecCCCcc
Confidence 8764 23556888999999999999984 12234456666666666665543 344454333345667
Q ss_pred eEEEEEEccCCcCCCC---chHHHHHHHHHH-HHCCcEEEec------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGY---GSLYAASLLKKL-REDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 785 l~~~iel~~~~~~~~~---~~~~~~~l~~~l-~e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.++.+++......... ......+++..+ .++||++.|+ .+.+|++ +..++++|++++++|++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 331 YFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp SEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCCHHHHHHHHHHHHT
T ss_pred EEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCCHHHHHHHHHHHHh
Confidence 8888888642210000 001233566655 4779999873 2678886 55699999999998864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=199.23 Aligned_cols=343 Identities=9% Similarity=-0.019 Sum_probs=217.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc---CCCCC---ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPENV---YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~---~~~~~---~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
.++++.++.. ++ .+|+|.+|+.++++++.... ...+. ++...+|.++|+++++....+.++|++||++|
T Consensus 28 ~~i~l~~~~~----~~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 102 (420)
T 1t3i_A 28 PLVYLDNAAT----SQ-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 102 (420)
T ss_dssp ECEECBTTTC----CC-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred ceEEecCCcc----CC-CCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHH
Confidence 4555554322 34 68999999999998753210 01111 24567899999999875113689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce---ecCCCCCCCCCcCCcccCCCcccCC
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals---~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++.+++.+.+ .. .. . ..+|++...+||+....... ..|.
T Consensus 103 ~~~~~~~~~~-~~--~~--~------------gd~Vl~~~~~~~~~~~~~~~~~~~~g~--------------------- 144 (420)
T 1t3i_A 103 INLVAYSWGM-NN--LK--A------------GDEIITTVMEHHSNLVPWQMVAAKTGA--------------------- 144 (420)
T ss_dssp HHHHHHHTHH-HH--CC--T------------TCEEEEETTCCGGGTHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHhhh-cc--cC--C------------CCEEEECcchhHHHHHHHHHHHHhcCc---------------------
Confidence 9999998732 10 00 1 15799999999996421111 1110
Q ss_pred CcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
.+..++.+..+ ..| .+.+++.+. +++.+|+++++ +
T Consensus 145 -------~~~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~ 179 (420)
T 1t3i_A 145 -------VLKFVQLDEQE---------------------SFD--------LEHFKTLLS--------EKTKLVTVVHI-S 179 (420)
T ss_dssp -------EEEEECBCTTS---------------------SBC--------HHHHHHHCC--------TTEEEEEEESB-C
T ss_pred -------EEEEeccCCCC---------------------CcC--------HHHHHHhhC--------CCceEEEEeCC-c
Confidence 00111111000 011 244555553 35788999997 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~ 708 (863)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....++ +|++++| |.++ + ..+|+++++++++
T Consensus 180 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~di~~~s~sK~~~-~-~g~G~~~~~~~~~ 248 (420)
T 1t3i_A 180 NTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLID--CDWLVASGHKMCA-P-TGIGFLYGKEEIL 248 (420)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CSEEEEEGGGTTS-C-TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--CchhhcC--CCEEEEehhhhcC-C-CceEEEEEchHHH
Confidence 99998876 8999999999999999999995 54432 2333444 7998776 9554 3 3489999999999
Q ss_pred HhhhcCCccce--------------eecccCCCccHHHHHHHHH-HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 709 DSFVGDSKLKA--------------LLHGHSYSAHALGCAAAAK-SIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 709 ~~l~~~~~~~~--------------~~~~~T~~~~pla~AAalA-aL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+.+........ ....++++.++++++++++ +++.+++.. .+++.+..+.+.+.+.+ .+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~----~L~~ 323 (420)
T 1t3i_A 249 EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLG-MENIHNYEVELTHYLWQ----GLGQ 323 (420)
T ss_dssp HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH----HHHT
T ss_pred hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH----HHHh
Confidence 88764210000 0011234556666666655 788775422 23344444444444433 3344
Q ss_pred CCCeeEec------ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCC
Q 002941 774 HRTVQRVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCS 834 (863)
Q Consensus 774 ~p~v~~vr------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~ 834 (863)
.+.+.-+. +.|.++.+.+.... ...+.+.|.++||++++. .+.+|+.++..+
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~ 394 (420)
T 1t3i_A 324 IPQLRLYGPNPKHGDRAALASFNVAGLH---------ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYN 394 (420)
T ss_dssp CTTEEEESCCGGGSCBCSEEEEEETTBC---------HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTC
T ss_pred CCCeEEeCCCccccccCCEEEEEECCCC---------HHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCC
Confidence 54433222 24888888875321 456788899999999875 478999988888
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~~ 855 (863)
+++++++++++|+++++.+.+
T Consensus 395 ~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 395 TKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999877643
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-21 Score=215.14 Aligned_cols=341 Identities=12% Similarity=0.048 Sum_probs=219.9
Q ss_pred eEEeeecccccccCCCCCcHHH--HHHHHHHHHhcccccCCCCCCh-HHHHHHHHHHhhc-----CCCCCCe---EEEeC
Q 002941 400 QQFDACASWWTQGPDATLQIEL--ARDMGYTAARFGHVMFPENVYE-PALECAELLLQGV-----GKGWASR---AYFSD 468 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V--~~Ai~~q~~~~~~~~~~~~~~~-~~~eLae~L~~~~-----p~~~~~~---v~f~~ 468 (863)
.++|+.+|... .+|+ +|.+ .+++.+++++... ..|... -..+|.+.|++++ +.. .+. ++|++
T Consensus 48 ~~i~l~~g~~~-~~~~--~~~~~~~~a~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~ 120 (430)
T 2x5f_A 48 TTYNATIGMAT-NKDG--KMFASSLDAMFNDLTPDEI---FPYAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTN 120 (430)
T ss_dssp CSEECCCSSCE-ETTE--ECCCHHHHTTBSSCCGGGT---SSCCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEES
T ss_pred CcEEeeeeecc-CCCC--chhhHHHHHHHHhcCcccc---cccCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcC
Confidence 68899887654 6774 5767 8887777654111 112221 1345666666655 422 357 99999
Q ss_pred ChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcc
Q 002941 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLF 547 (863)
Q Consensus 469 SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~ 547 (863)
+|++|++.+++...+ .| .+|++...+||+....+.. .+. .
T Consensus 121 g~~~al~~~~~~l~~---------~g------------d~Vl~~~p~y~~~~~~~~~~~g~-~----------------- 161 (430)
T 2x5f_A 121 ALTHGLSLVGDLFVN---------QD------------DTILLPEHNWGNYKLVFNTRNGA-N----------------- 161 (430)
T ss_dssp HHHHHHHHHHHHHCC---------TT------------CEEEEESSCCTHHHHHHTTTTCC-E-----------------
T ss_pred CchHHHHHHHHHHhC---------CC------------CEEEEcCCcCccHHHHHHHhcCC-e-----------------
Confidence 999999999987621 12 5799999999997544322 110 0
Q ss_pred cCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 002941 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (863)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP 627 (863)
+..++.... . + ..| .+.+++.+.. .+.+..+.++++|
T Consensus 162 -----------~~~~~~~~~-----------------~-~--~~d--------~~~l~~~l~~----~~~~~~~v~i~~p 198 (430)
T 2x5f_A 162 -----------LQTYPIFDK-----------------D-G--HYT--------TDSLVEALQS----YNKDKVIMILNYP 198 (430)
T ss_dssp -----------EEEECCBCT-----------------T-S--CBC--------SHHHHHHHHH----CCSSEEEEEECSS
T ss_pred -----------EEEEeccCc-----------------c-C--CcC--------HHHHHHHHHh----cCCCCEEEEEcCC
Confidence 001111100 0 0 011 1345566643 1123345566777
Q ss_pred ccccCCCceeCCHHHHHHHHHHHHH-----cCCeEEEecccccccccCCcc-hh--hhcCCCCc------EEEeccccC-
Q 002941 628 VVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET-TA--DLLGCVPD------IACYGKLLT- 692 (863)
Q Consensus 628 Viqg~gG~~~pp~~fL~~Lrelc~~-----~gilLI~DEV~TGfGRtG~~~-a~--e~~gv~PD------ivt~sKgLg- 692 (863)
++..|. +++.+++++|.++|++ ||+++|+||++++|++.|..+ .. ...+..++ +.+++|.++
T Consensus 199 --~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 275 (430)
T 2x5f_A 199 --NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFA 275 (430)
T ss_dssp --CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTC
T ss_pred --CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCC
Confidence 788886 4688999999999999 999999999999997776522 22 22244455 347799997
Q ss_pred CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHH-HhcChhhHHh---HHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK-WFKDPQTNHN---IIPERRILRELWDL 765 (863)
Q Consensus 693 gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~-~l~~~~l~~~---l~~~~~~l~~~l~~ 765 (863)
.| +++|++++ ++++++.+.... ....+..+++.++++++++.++|+ .. ++.++ +.+..+..++.+
T Consensus 276 ~G-~riG~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l-- 347 (430)
T 2x5f_A 276 WG-FRVGFMTFGTSDQTTKEVLEAKV--KGLIRSNISSGPLPTQSAVKHVLKNNK---QFDKEIEQNIQTLKERYEVT-- 347 (430)
T ss_dssp GG-GCCEEEEEBCCCHHHHHHHHHHH--HHHHHTTTSSCCHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred CC-CCeEEEEEecCCHHHHHHHHHHH--hhhhhcccCCCChHHHHHHHHHHccCh---HHHHHHHHHHHHHHHHHHHH--
Confidence 78 89999999 999998876411 001122678899999999999987 32 23333 444444444433
Q ss_pred HHHHHHh----cCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-CCEEEEecCCCCcHHH
Q 002941 766 ELIQQIS----SHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 766 ~l~~~~~----~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-g~~lr~~ppl~~t~ee 838 (863)
.+.+. +. .+..+... |+++.+.+... ....++..|.+ +||++.|. .+.+|+.++. .++++
T Consensus 348 --~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~ 414 (430)
T 2x5f_A 348 --KEVVYADQYHS-HWQAYDFNSGYFMAIKVHDV---------DPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDD 414 (430)
T ss_dssp --HHHHTCGGGTT-TEEECCCCBSSEEEEEESSS---------CHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGG
T ss_pred --HHHHHhhCCCC-CceeeCCCceEEEEeCCCCC---------CHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHH
Confidence 33344 23 24444444 56688888621 14578888987 99999996 4789998764 58999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEF 853 (863)
Q Consensus 839 id~~v~~L~~~l~~l 853 (863)
+++++++|.++++++
T Consensus 415 i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 415 IPHVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-19 Score=197.41 Aligned_cols=322 Identities=14% Similarity=0.137 Sum_probs=216.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.++. +.++ .+|+|.+|+.++++.... +......+|.++|+++++.. .+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 31 EVIKLASNE--NPFG--TPPKAIECLRQNANKAHL-----YPDDSMIELKSTLAQKYKVQ-NENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CCEECSSCC--CTTC--SCHHHHHHHHHHGGGTTS-----CCCTTCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEecCCC--CCCC--CCHHHHHHHHHHHHhhcc-----CCCCChHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 788988754 3466 479999999999875432 22222358888898888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
..++ .| .+|++...+|++....+...+.
T Consensus 101 ~l~~---------~g------------d~vl~~~~~~~~~~~~~~~~g~------------------------------- 128 (365)
T 3get_A 101 SKLN---------SK------------NAFLQAGVTFAMYEIYAKQCGA------------------------------- 128 (365)
T ss_dssp HHCC---------TT------------CEEEECSSCCTHHHHHHHHHTC-------------------------------
T ss_pred HHhC---------CC------------CEEEEeCCChHHHHHHHHHcCC-------------------------------
Confidence 7621 12 5799999988876443322210
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..+.+|. . .+ .. ...+.+++.+. .++.+|+++.. ++..|.+. |
T Consensus 129 ~~~~v~~-~----------------------~~--~~--~d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~-~ 171 (365)
T 3get_A 129 KCYKTQS-I----------------------TH--NL--DEFKKLYETHK--------DEIKLIFLCLP-NNPLGECL-D 171 (365)
T ss_dssp EEEECSS-S----------------------SC--CH--HHHHHHHHHTT--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEEEEec-C----------------------CC--CC--CCHHHHHHHhC--------CCCCEEEEcCC-CCCCCCCc-C
Confidence 0011110 0 00 01 01245555552 34566666543 78888765 5
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccc--cC-C-cchhhh---cCCCCcEEEeccccC-CCCCCceeeeccHHHHHhh
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWR--LG-V-ETTADL---LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGR--tG-~-~~a~e~---~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l 711 (863)
.+.+++|.++| ++|+++|+||+|++|.. .| . ...... ++....+.+++|.++ .| +++|++++++++++.+
T Consensus 172 ~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 249 (365)
T 3get_A 172 ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAF 249 (365)
T ss_dssp HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHH
Confidence 66677777777 67999999999987752 22 2 122222 233333447899997 77 8999999999999988
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel 791 (863)
.. ...+++.++++++++.++|+ +.++.++.++..+..++.+.+. +.++ .+..+.+.|.++.+.+
T Consensus 250 ~~--------~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~----l~~~-g~~~~~~~~~~~~~~~ 313 (365)
T 3get_A 250 YK--------LRAPFNVSNLALKAAVAAMD---DDEFTEKTLENNFSQMELYKEF----AKKH-NIKIIDSYTNFITYFF 313 (365)
T ss_dssp HH--------HSCTTCSCHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHH----HHHT-TCEECCCSSSEEEEEC
T ss_pred HH--------hcCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH----HHhC-CCEECCCCCeEEEEEC
Confidence 64 22456789999999999887 3345556666666666655443 3334 3444567788888877
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.... ...+.+.|.++||++.+. .+.+|+... +++++++++++|++++
T Consensus 314 ~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 314 DEKN---------STDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SSSC---------HHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCC---------HHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 5421 567889999999999986 388999843 8999999999998865
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-19 Score=199.41 Aligned_cols=341 Identities=13% Similarity=0.046 Sum_probs=218.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCC----CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~----~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+ .|+ .+|.|.+|+.+++++. +..... ....+...++.++|+++++.+ .+.++|++||++|+
T Consensus 30 ~yld~~~------~~~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 101 (416)
T 1qz9_A 30 IYLDGNS------LGA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 101 (416)
T ss_dssp EECCTTT------SCC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EeecCCC------cCC-CcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccEEEeCChhHHH
Confidence 7888643 345 6899999999999763 211100 012356688999999998753 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+.|++.+++ +.. .+. +| .++|.....+|+++..++.. .....+ + .
T Consensus 102 ~~al~~~~~-~~~-~~~-~g------------d~vii~~~~~~~~~~~~~~~~~~~~~~-g---------------~--- 147 (416)
T 1qz9_A 102 FKVLSAALR-VQA-TRS-PE------------RRVIVTETSNFPTDLYIAEGLADMLQQ-G---------------Y--- 147 (416)
T ss_dssp HHHHHHHHH-HHH-HHS-TT------------CCEEEEETTSCHHHHHHHHHHHHHHCS-S---------------C---
T ss_pred HHHHHhhcc-ccc-ccC-CC------------CcEEEEcCCCCCchHHHHHHHHHHhcC-C---------------c---
Confidence 999998732 210 001 12 34777788888876554321 100000 0 0
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+..++.+ +.+++.+. +++.+|+++++ ++..
T Consensus 148 ----~~~~v~~~------------------------------------~~l~~~i~--------~~~~~v~~~~~-~npt 178 (416)
T 1qz9_A 148 ----TLRLVDSP------------------------------------EELPQAID--------QDTAVVMLTHV-NYKT 178 (416)
T ss_dssp ----EEEEESSG------------------------------------GGHHHHCS--------TTEEEEEEESB-CTTT
T ss_pred ----eEEEeCcH------------------------------------HHHHHHhC--------CCceEEEEecc-ccCc
Confidence 00111110 22444442 35788999997 8999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCc-eeeeccHHHHHh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPL-AATLATNAVFDS 710 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pi-gav~~~~~i~~~ 710 (863)
|.+.+ +++|.++|++||+++|+||+|+ +|... +..+.+ .+|++++| |++++| .++ |++++++++++.
T Consensus 179 G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~ 248 (416)
T 1qz9_A 179 GYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGG-PGSQAFVWVSPQLCDL 248 (416)
T ss_dssp CBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCC-TTCCCEEEECTTTTTT
T ss_pred ccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCC-CCCeEEEEECHHHHhc
Confidence 98876 8999999999999999999995 65443 223333 37998874 999887 677 999999998776
Q ss_pred hhcCCc-cce----------e-----eccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh-
Q 002941 711 FVGDSK-LKA----------L-----LHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS- 772 (863)
Q Consensus 711 l~~~~~-~~~----------~-----~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~- 772 (863)
+..... +.. + .... .++.++.+++++.++|+.+.++. .+++.+..+.+++.+.+.+.+.+.
T Consensus 249 l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~ 327 (416)
T 1qz9_A 249 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD-MASLRRKSLALTDLFIELVEQRCAA 327 (416)
T ss_dssp SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 643100 000 0 0112 23468889999999999885432 334444445555555445444322
Q ss_pred -cCCCeeEe--cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecC-CCCcHHHHHHHHHHHH
Q 002941 773 -SHRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCG-PCSSPEVCSQLLLKLY 847 (863)
Q Consensus 773 -~~p~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~pp-l~~t~eeid~~v~~L~ 847 (863)
....+... +..+.++.+.+.+ ...+.+.|.++||++... .+.+|+.++ +.++++++++++++|+
T Consensus 328 ~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~ 396 (416)
T 1qz9_A 328 HELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILG 396 (416)
T ss_dssp SCCEECSCSSGGGBCSEEEEECTT-----------HHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCeEEeCCCCHHHcCCEEEEecCC-----------HHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHH
Confidence 22111111 1246677777642 456888899999998764 589999987 5889999999999999
Q ss_pred HHHHHH
Q 002941 848 QRLEEF 853 (863)
Q Consensus 848 ~~l~~l 853 (863)
+++++.
T Consensus 397 ~~~~~~ 402 (416)
T 1qz9_A 397 EILDRK 402 (416)
T ss_dssp HHHHHT
T ss_pred HHHhcc
Confidence 988753
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=208.64 Aligned_cols=352 Identities=10% Similarity=-0.018 Sum_probs=211.4
Q ss_pred eEEeeecccccccCCC-CCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCCC-----CCCeEEE--eCCh
Q 002941 400 QQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDNG 470 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh-~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~-----~~~~v~f--~~SG 470 (863)
.++|+.+|......|+ ...|.|.+|+.+++.+.... ..| ......+|.++|+++++.. ..++++| ++||
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN--HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CceeeccceecCCCCCccccHHHHHHHHHhhhChhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 7889888775444443 13489999999887331111 112 2233456777777766210 1368999 9999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.+++++ ..+. .|.. +. +.+|++...+||+....+...+...
T Consensus 109 ~~a~~~~~~~~-~~~~--~g~~-~~----------~d~Vl~~~p~y~~~~~~~~~~g~~~-------------------- 154 (412)
T 1ajs_A 109 TGALRIGAEFL-ARWY--NGTN-NK----------DTPVYVSSPTWENHNGVFTTAGFKD-------------------- 154 (412)
T ss_dssp HHHHHHHHHHH-HHHS--SSSS-CC----------CSCEEEEESCCTHHHHHHHHTTCSC--------------------
T ss_pred HHHHHHHHHHH-HHhC--cCcC-CC----------CCeEEEcCCCcHHHHHHHHHcCCce--------------------
Confidence 99999999876 2221 1100 00 1469999999999765443321100
Q ss_pred CcccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 551 PTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 551 p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
+..++.. +.+ ..| .+.+++.+.+ ..++.+..++..|
T Consensus 155 --------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~----~~~~~~~v~~~~p- 192 (412)
T 1ajs_A 155 --------IRSYRYWDTEKR---------------------GLD--------LQGFLSDLEN----APEFSIFVLHACA- 192 (412)
T ss_dssp --------EEEEECEETTTT---------------------EEC--------HHHHHHHHHH----SCTTCEEEEESSS-
T ss_pred --------eEEEeeecCCCC---------------------ccC--------HHHHHHHHHh----CCCCcEEEEECCC-
Confidence 0011110 000 011 2445666653 1223334445566
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC---CcchhhhcCCCCc----EEEeccccCC-CCCCcee
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLLGCVPD----IACYGKLLTG-GVIPLAA 700 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG---~~~a~e~~gv~PD----ivt~sKgLgg-G~~Piga 700 (863)
++..|. +++.+++++|.++|++||++||+||++++|++.| .++....+...+| +.++||+++. | +++|+
T Consensus 193 -~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~ 269 (412)
T 1ajs_A 193 -HNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGN 269 (412)
T ss_dssp -CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEE
T ss_pred -CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceEE
Confidence 677775 5688999999999999999999999999998876 4445554432345 4478999997 8 89999
Q ss_pred eec---cHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc----ChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 701 TLA---TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK----DPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 701 v~~---~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~----~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+++ ++++++.+...- . ..+..++. .++++++++.++|+..+ -++..+++.+..+..++.+.+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 344 (412)
T 1ajs_A 270 LTVVAKEPDSILRVLSQM--Q-KIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL-- 344 (412)
T ss_dssp EEEECSSHHHHHHHHHHH--H-HHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred EEEecCCHHHHHHHHHHH--H-HHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999 887554432100 0 01445666 49999999999987532 01234455555555555554443321
Q ss_pred cCC-CeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 773 SHR-TVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 773 ~~p-~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..| .+..+.. .|++..+.+. ...+...+.++||++.+. +|+... .++++++++++++|++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 345 KTPGTWNHITDQIGMFSFTGLN------------PKQVEYLINQKHIYLLPS---GRINMC-GLTTKNLDYVATSIHEAV 408 (412)
T ss_dssp TCSSCCHHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTT---SEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CCCCCeeEEcCCCceEEEeCCC------------HHHHHHHHHhCCEEecCC---cEEEee-eCCHHHHHHHHHHHHHHH
Confidence 101 1222223 3444443321 233455566899999874 477654 358999999999999988
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 409 ~~~ 411 (412)
T 1ajs_A 409 TKI 411 (412)
T ss_dssp HHC
T ss_pred Hhc
Confidence 653
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=196.94 Aligned_cols=326 Identities=11% Similarity=0.018 Sum_probs=208.1
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCe
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~ 463 (863)
++|.++++.+|+ +++|+.++. +.++ .+|++.+|+.+++..... +.++...+|.++|+++++.. .+.
T Consensus 4 ~~g~~~~~~~g~----~~id~~~~~--~~~~--~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~ 69 (350)
T 3fkd_A 4 GHGDEGITPLSS----EIVNFSTTV--WTDG--DKDHLEKHLVENLNCIRH-----YPEPDAGTLRQMLAKRNSVD-NNA 69 (350)
T ss_dssp ----------------CCEECSCCS--CCCS--CCHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHTTCC-GGG
T ss_pred cccchHhhhccc----cEEEccCCC--CCCC--CCHHHHHHHHHhHhHHhc-----CCCCcHHHHHHHHHHHhCcC-HHH
Confidence 567789999998 999999754 4455 579999999988854322 22333357889999988743 468
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccC
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~ 543 (863)
++|+++|++|++.+++... | .+||+...+|++....+...+.
T Consensus 70 i~~t~g~~~al~~~~~~l~-------g----------------d~Vi~~~p~~~~~~~~~~~~g~--------------- 111 (350)
T 3fkd_A 70 ILVTNGPTAAFYQIAQAFR-------G----------------SRSLIAIPSFAEYEDACRMYEH--------------- 111 (350)
T ss_dssp EEEESHHHHHHHHHHHHTT-------T----------------CEEEEEESCCHHHHHHHHHTTC---------------
T ss_pred EEEcCCHHHHHHHHHHHHC-------C----------------CEEEEeCCCcHHHHHHHHHcCC---------------
Confidence 9999999999999998761 2 5699999999886533322110
Q ss_pred CCcccCCCcccccCceeeecC-cchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 544 RGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
.+..++. +. .+ .+. ..++.+
T Consensus 112 --------------~~~~v~~~~~------------------------~~--------------~~~-------~~~~~~ 132 (350)
T 3fkd_A 112 --------------EVCFYPSNED------------------------IG--------------EAD-------FSNMDF 132 (350)
T ss_dssp --------------EEEEEETTSC------------------------GG--------------GSC-------CTTCSE
T ss_pred --------------eEEEEecCCc------------------------cc--------------cCc-------cCCCCE
Confidence 0011111 10 00 010 012334
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch--hhhcCCCCcEEEeccccC-CCCCCce
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVIPLA 699 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv~PDivt~sKgLg-gG~~Pig 699 (863)
|+++.. ++..|.+.+ .+.+++|.++|++ .++|+||++++|+..|.... ...++....+.+++|.++ .| +++|
T Consensus 133 v~i~~p-~nptG~~~~-~~~l~~l~~~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G 207 (350)
T 3fkd_A 133 CWLCNP-NNPDGRLLQ-RTEILRLLNDHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPG-LRIG 207 (350)
T ss_dssp EEEESS-CTTTCCCCC-HHHHHHHHHHCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGG-GCCE
T ss_pred EEEeCC-CCCcCCCCC-HHHHHHHHHhCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcc-hheE
Confidence 444443 788897665 4445555555544 49999999999887765322 222222233447899998 77 8999
Q ss_pred eeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE
Q 002941 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (863)
Q Consensus 700 av~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~ 779 (863)
++++++++++.+... ..+++.++++++++.++|+..+ ++.+++++.. ..++.+ .+.+.++|.+..
T Consensus 208 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~-~~~~~l----~~~L~~~~~~~~ 272 (350)
T 3fkd_A 208 YIVANKDFMKRVAAF--------STPWAVNALAIEAAKFILIHPA--QFTLPIRKWQ-RNTVDF----ITALNRLDGVEV 272 (350)
T ss_dssp EEECCHHHHHHHHTT--------CCTTCSCHHHHHHHHHHHHCTT--TTCCCHHHHH-HHHHHH----HHHHHHSTTEEE
T ss_pred eEEeCHHHHHHHHHh--------CCCCCCCHHHHHHHHHHHhCHH--HHHHHHHHHH-HHHHHH----HHHHhcCCCcEE
Confidence 999999999988752 2467789999999999988432 2444444443 344433 334455666666
Q ss_pred ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 780 VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 780 vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..+.|.++.+.+.... ..++.+.|.+ +||++++. .+.+|++. .+++++++++++|++.++
T Consensus 273 ~~~~~~~~~~~~~~~~---------~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 273 HPSGTTFFLLRLKKGT---------AAELKKYMLEEYNMLIRDASNFRGLDESYVRITT---QRPAQNQLFIKALETFLE 340 (350)
T ss_dssp CCCSSSEEEEEESSSC---------HHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCC---------HHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc---CCHHHHHHHHHHHHHHHH
Confidence 6778888888876432 5678889998 99999874 36899973 488889999998887765
Q ss_pred H
Q 002941 852 E 852 (863)
Q Consensus 852 ~ 852 (863)
+
T Consensus 341 ~ 341 (350)
T 3fkd_A 341 K 341 (350)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=200.31 Aligned_cols=333 Identities=14% Similarity=0.030 Sum_probs=202.3
Q ss_pred CcHHHHHHHHHHHHhcccccCC-CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHh--hccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF--DHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~-~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~--~~G~~t 493 (863)
.+|++.+|+.+++.+....... ....+...+++++|+++++.+ .+.++|++||++|++.|++.++..+.. ..|...
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 4799999999988763221100 012445668889999988754 468899999999999999998432111 111101
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
+ ...+|++...+|++....+ ...|.. +..++....+
T Consensus 121 ~----------~gd~vl~~~~~~~~~~~~~-~~~g~~----------------------------~~~v~~~~~~----- 156 (397)
T 3f9t_A 121 N----------EHPKIIVPITAHFSFEKGR-EMMDLE----------------------------YIYAPIKEDY----- 156 (397)
T ss_dssp C----------SSCEEEEETTCCTHHHHHH-HHHTCE----------------------------EEEECBCTTS-----
T ss_pred C----------CCeEEEECCcchhHHHHHH-HHcCce----------------------------eEEEeeCCCC-----
Confidence 1 1267888888877743322 221100 1111111100
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
.-| .+.+++.+++ .++.+|++++. ++..|.+.+ +++|.++|++|
T Consensus 157 ----------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~ 200 (397)
T 3f9t_A 157 ----------------TID--------EKFVKDAVED-------YDVDGIIGIAG-TTELGTIDN----IEELSKIAKEN 200 (397)
T ss_dssp ----------------SBC--------HHHHHHHHHH-------SCCCEEEEEBS-CTTTCCBCC----HHHHHHHHHHH
T ss_pred ----------------cCC--------HHHHHHHHhh-------cCCeEEEEECC-CCCCCCCCC----HHHHHHHHHHh
Confidence 011 2456666653 14556666665 788898765 99999999999
Q ss_pred CCeEEEeccccccc--ccCC---------cchhhhcCCCCcEEEeccccCCCCCCceeeeccHH-HHHhhhcCCcc----
Q 002941 654 KIPVIFDEVFTGFW--RLGV---------ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA-VFDSFVGDSKL---- 717 (863)
Q Consensus 654 gilLI~DEV~TGfG--RtG~---------~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~-i~~~l~~~~~~---- 717 (863)
|+++|+||+|+++. .+|. .+.++. ++...+.+++|.+++| .++|+++++++ +.+.+......
T Consensus 201 ~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 278 (397)
T 3f9t_A 201 NIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPSGGILFKDIGYKRYLDVDAPYLTET 278 (397)
T ss_dssp TCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSCEEEEESSGGGGGGTCEECTTSSSS
T ss_pred CCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCceEEEEeCHHHHHhhccCCccccCC
Confidence 99999999998743 3443 334444 5544455678998888 69999988655 44443211100
Q ss_pred -ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCc
Q 002941 718 -KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 718 -~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~ 796 (863)
....++.+.+.++++++++++.+... . .++..++...+++.+.+.+.+. ..+.+.. ..+.++.+.+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~--~~~~~~~~~~~~--- 347 (397)
T 3f9t_A 279 RQATILGTRVGFGGACTYAVLRYLGRE---G-QRKIVNECMENTLYLYKKLKEN--NFKPVIE--PILNIVAIEDED--- 347 (397)
T ss_dssp EECSSCSSCCSHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSC--CSSSEEEEECTT---
T ss_pred CccccccccccchHHHHHHHHHHHhHH---H-HHHHHHHHHHHHHHHHHHHHHC--CCEEEcC--CCccEEEEEeCC---
Confidence 00111333445677777777665432 1 2233333334444443343332 2332222 345566555431
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...+.+.|.++||++.+.. +.+|+.++..++++++++++++|+++++
T Consensus 348 --------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 348 --------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp --------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 4578899999999999875 8999999888999999999999998764
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=205.89 Aligned_cols=333 Identities=13% Similarity=0.058 Sum_probs=203.3
Q ss_pred eEEeeecccccccCC--CCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCC-C----CCCeEEE--eCC
Q 002941 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGK-G----WASRAYF--SDN 469 (863)
Q Consensus 400 ~ylD~~sg~~~~~lG--h~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~-~----~~~~v~f--~~S 469 (863)
.++|+.+|.+.++.| + .+|.|.+|+.+++++... ..+ ......+|.++|++++.. + ..++++| +++
T Consensus 27 ~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g 102 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTP-VLTSVKKAEQYLLENETT---KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG 102 (396)
T ss_dssp -CEESSCCSCCCTTSCCC-CCHHHHHHHHHHHHHCCC---CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred CceecccccccCCCCCcc-CcHHHHHHHHhhcCcccc---cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc
Confidence 789999998766655 3 579999999998875311 112 223345666666665511 0 0257888 999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 470 GSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
|++|++.+++++ ..+. .| .+|++...+||+....+...+..
T Consensus 103 ~~~a~~~~~~~~-~~~~------~g------------d~Vl~~~p~y~~~~~~~~~~g~~-------------------- 143 (396)
T 2q7w_A 103 GTGALRVAADFL-AKNT------SV------------KRVWVSNPSWPNHKSVFNSAGLE-------------------- 143 (396)
T ss_dssp HHHHHHHHHHHH-HHHS------CC------------CEEEEEESCCTHHHHHHHHTTCE--------------------
T ss_pred chhhHHHHHHHH-HHhC------CC------------CEEEEcCCCchhHHHHHHHcCCc--------------------
Confidence 999999999987 3221 12 57999999999976544332110
Q ss_pred CCcccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-Ec
Q 002941 550 PPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IE 626 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vE 626 (863)
+..++.. +.+ .-| .+.+++.+.+ .+.+..+++ ..
T Consensus 144 ---------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~ 180 (396)
T 2q7w_A 144 ---------VREYAYYDAENH---------------------TLD--------FDALINSLNE-----AQAGDVVLFHGC 180 (396)
T ss_dssp ---------EEEEECEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEEECS
T ss_pred ---------eEEEecccCCCC---------------------CcC--------HHHHHHHHHh-----CCCCCEEEEeCC
Confidence 0011110 000 011 2456666642 122234444 45
Q ss_pred cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--CcchhhhcCCCCc----EEEeccccC-CCCCCce
Q 002941 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLGCVPD----IACYGKLLT-GGVIPLA 699 (863)
Q Consensus 627 PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~a~e~~gv~PD----ivt~sKgLg-gG~~Pig 699 (863)
| ++..|. +++.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|+++ .| +++|
T Consensus 181 p--~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG 256 (396)
T 2q7w_A 181 C--HNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYN-ERVG 256 (396)
T ss_dssp S--CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCE
T ss_pred C--CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccc-cccc
Confidence 5 788886 5678999999999999999999999999997654 3344443433333 347899998 78 8999
Q ss_pred eeec---cHH----HHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc-C---hhhHHhHHHHHHHHHHHHHHHH
Q 002941 700 ATLA---TNA----VFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK-D---PQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 700 av~~---~~~----i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~-~---~~l~~~l~~~~~~l~~~l~~~l 767 (863)
++++ +++ +++.+.. .+..++. .++++++++.++|+... . .+..+++.+..+..++.+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~- 328 (396)
T 2q7w_A 257 ACTLVAADSETVDRAFSQMKA-------AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNT- 328 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHH-------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHH-
T ss_pred eEEEEcCCHHHHHHHHHHHHH-------HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9986 564 4444432 1223444 49999999988886420 0 122333344444444444333
Q ss_pred HHHHhcCC---CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHH
Q 002941 768 IQQISSHR---TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 768 ~~~~~~~p---~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v 843 (863)
+.+.+ .+..+. ..|+++.+.+. ...+...+.++||++.+. +|+.++. .+++++++++
T Consensus 329 ---L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~~-~~~e~i~~~~ 389 (396)
T 2q7w_A 329 ---LQEKGANRDFSFIIKQNGMFSFSGLT------------KEQVLRLREEFGVYAVAS---GRVNVAG-MTPDNMAPLC 389 (396)
T ss_dssp ---HHHTTCCSCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGGG-CCTTTHHHHH
T ss_pred ---HHhcCCCCCcceecCCCceEEEecCC------------HHHHHHHHHhcCeeecCC---ceEEEee-cCHHHHHHHH
Confidence 33332 122122 33555444331 134566677899999874 5787653 4899999999
Q ss_pred HHHHHH
Q 002941 844 LKLYQR 849 (863)
Q Consensus 844 ~~L~~~ 849 (863)
++|+++
T Consensus 390 ~~l~~~ 395 (396)
T 2q7w_A 390 EAIVAV 395 (396)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=199.06 Aligned_cols=328 Identities=11% Similarity=0.022 Sum_probs=212.3
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+|++.+|+.+++.. +.. ....+...+++++|+++++.+..+.++|++||++|++.+++.+++ .|
T Consensus 31 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~---------~g-- 95 (386)
T 2dr1_A 31 CFPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVS---------KG-- 95 (386)
T ss_dssp CCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSC---------TT--
T ss_pred CcHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhc---------CC--
Confidence 578888888776542 110 012456788999999988742124699999999999999987621 12
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+|++...+|||.+.... ...|. .+..++.+..+
T Consensus 96 ----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 130 (386)
T 2dr1_A 96 ----------GKVLVTIIGAFGKRYKEVVESNGR----------------------------KAVVLEYEPGK------- 130 (386)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CeEEEEcCCchhHHHHHHHHHhCC----------------------------ceEEEecCCCC-------
Confidence 579999999998422111 11110 00111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+++ ..++.+|++++. ++..|.+.+ +++|.++|++||+
T Consensus 131 --------------~~d--------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 177 (386)
T 2dr1_A 131 --------------AVK--------PEDLDDALRK------NPDVEAVTITYN-ETSTGVLNP----LPELAKVAKEHDK 177 (386)
T ss_dssp --------------CCC--------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEECC----HHHHHHHHHHTTC
T ss_pred --------------CCC--------HHHHHHHHhc------CCCCcEEEEEee-cCCcchhCC----HHHHHHHHHHcCC
Confidence 011 2456666642 135678888886 899998875 8999999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc----------ccee--e
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK----------LKAL--L 721 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~----------~~~~--~ 721 (863)
++|+||+++ +|... +....+ .+|++++| |+++++ .++|++++++++++.+..... .... .
T Consensus 178 ~li~D~a~~-~~~~~--~~~~~~--~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (386)
T 2dr1_A 178 LVFVDAVSA-MGGAD--IKFDKW--GLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251 (386)
T ss_dssp EEEEECTTT-BTTBC--CCTTTT--TCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHH
T ss_pred eEEEEcccc-ccCcc--cccccc--CCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccC
Confidence 999999995 44332 222222 46998776 999876 468999999999887642100 0001 0
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc--cceEEEEEEccCCcCCC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAG 799 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl~~~iel~~~~~~~~ 799 (863)
...+++.++++++++.++|+.+++.+..+++.+..+.+++.+.+.+.+. ..+.+.. .+ .|.++.+.+....
T Consensus 252 ~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~~~~~~~~~~~~~~~~~---- 324 (386)
T 2dr1_A 252 ESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDILAE-PGHESPTITAVLTPPGI---- 324 (386)
T ss_dssp SSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSC-TTCBCSSEEEEECCTTC----
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCeeCcC-ccccCCceEEEEcCCCC----
Confidence 2345678999999999999987543112333444444444443343332 2222111 11 5778888875321
Q ss_pred CchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
....+.+.|.++||++.+. ++.+|+.++..++++++++++++|+++++++.
T Consensus 325 ----~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 325 ----KGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp ----CHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1567889999999999874 37999998888999999999999999988764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=199.05 Aligned_cols=315 Identities=13% Similarity=0.080 Sum_probs=206.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +.+|+ +|.+ |+ ... ..|+.+...+|.++|+++++.+ .++++|+++|++|++.+++
T Consensus 30 ~~i~l~~~~--~~~~~--~~~v--a~----~~~-----~~Y~~~~~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 30 GDVWLNANE--YPTAV--EFQL--TQ----QTL-----NRYPECQPKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp CSEECSSCC--CSSCC--CCCC--CC----CCT-----TSCCCSSCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred ceEEeeCCC--CCCCC--CHhH--hh----hhh-----ccCCCccHHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHH
Confidence 678888764 57886 4665 21 111 1233333578889999888743 4689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
...+ +|+ .+|++...+||+....+...+. . +
T Consensus 94 ~~~~---------~g~-----------d~Vl~~~p~~~~~~~~~~~~g~-~----------------------------~ 124 (356)
T 1fg7_A 94 AFCE---------PGK-----------DAILYCPPTYGMYSVSAETIGV-E----------------------------C 124 (356)
T ss_dssp HHCC---------TTT-----------CEEEECSSSCTHHHHHHHHHTC-E----------------------------E
T ss_pred HHhC---------CCC-----------CEEEEeCCChHHHHHHHHHcCC-E----------------------------E
Confidence 7621 121 5799999999997654433211 0 0
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ ..| .+.+ ++.+ . ++.+|++... ++..|.+ .+
T Consensus 125 ~~v~~~~~~---------------------~~d--------~~~l----~~~i---~--~~~~v~l~~p-~nptG~~-~~ 164 (356)
T 1fg7_A 125 RTVPTLDNW---------------------QLD--------LQGI----SDKL---D--GVKVVYVCSP-NNPTGQL-IN 164 (356)
T ss_dssp EECCCCTTS---------------------CCC--------HHHH----HTSC---T--TEEEEEEESS-CTTTCCC-CC
T ss_pred EEeeCCCCC---------------------CCC--------HHHH----HHHh---c--CCCEEEEeCC-CCCCCCC-CC
Confidence 001110000 011 1223 2221 1 3455555554 8888865 57
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCcc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
.+.+++|.++|+ ||+++|+||+|++|++....... +.++....+.+++|.++ .| +++|++++++++++.+..
T Consensus 165 ~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~---- 238 (356)
T 1fg7_A 165 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMK---- 238 (356)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHH----
T ss_pred HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCch-hhhEEEEeCHHHHHHHHH----
Confidence 899999999999 99999999999988643333332 33333334558899998 78 899999999999988864
Q ss_pred ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eEecccceEEEEEEccCCc
Q 002941 718 KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 718 ~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~vrg~Gl~~~iel~~~~~ 796 (863)
...+|+.|+++++++.++|+.... ++.++..+..+..++.+.+. +.+++.+ ....+.|.++.+++. +
T Consensus 239 ----~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~----L~~~~~~~~~~~~~~~~~~~~~~--~- 306 (356)
T 1fg7_A 239 ----VIAPYPLSTPVADIAAQALSPQGI-VAMRERVAQIIAEREYLIAA----LKEIPCVEQVFDSETNYILARFK--A- 306 (356)
T ss_dssp ----HSCSSCSCHHHHHHHHHHTSHHHH-HHHHHHHHHHHHHHHHHHHH----HHHSTTEEEECCCSSSEEEEEET--T-
T ss_pred ----hcCCCCCCHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHH----HHhCCCceEECCCCCeEEEEECC--C-
Confidence 234567899999999888863210 12455555555555555433 3445543 334567888888875 2
Q ss_pred CCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 797 NAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.|.++||++++.| +.+|+++. +++++++++++|++
T Consensus 307 --------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 307 --------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp --------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 4568888999999999832 58999854 68999999988865
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-19 Score=199.86 Aligned_cols=339 Identities=12% Similarity=0.035 Sum_probs=215.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHH--hc-ccccC-C----CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAA--RF-GHVMF-P----ENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~--~~-~~~~~-~----~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGS 471 (863)
-|||+.++ |+ .+|+|.+|+.+++. +. +.... . ....+...++.++|+++++.+ .+.++|++||+
T Consensus 24 iyld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSAT------TP-VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 95 (423)
T ss_dssp EECBTTTC------CC-CCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EeecCCCc------CC-CCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChH
Confidence 68886542 44 68999999999887 32 21110 0 011245678999999998753 45899999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+|++.|++.+.+.+ . ++ ..+|++...+||+.......+.. ...
T Consensus 96 ~a~~~a~~~l~~~~-~------~~----------gd~Vl~~~~~~~~~~~~~~~~~~-~g~------------------- 138 (423)
T 3lvm_A 96 ESDNLAIKGAANFY-Q------KK----------GKHIITSKTEHKAVLDTCRQLER-EGF------------------- 138 (423)
T ss_dssp HHHHHHHHHHHHHH-T------TT----------CCEEEEETTSCHHHHHHHHHHHH-TTC-------------------
T ss_pred HHHHHHHHHHHHhh-c------cC----------CCEEEECCccchHHHHHHHHHHH-cCC-------------------
Confidence 99999999874322 1 10 25799999999886543322210 000
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg 631 (863)
.+..++....+ .-| .+.+++.+. +++++|+++++ ++
T Consensus 139 ------~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~n 174 (423)
T 3lvm_A 139 ------EVTYLAPQRNG---------------------IID--------LKELEAAMR--------DDTILVSIMHV-NN 174 (423)
T ss_dssp ------EEEEECCCTTS---------------------CCC--------HHHHHHHCC--------TTEEEEECCSB-CT
T ss_pred ------EEEEeccCCCC---------------------ccC--------HHHHHHhcC--------CCcEEEEEeCC-CC
Confidence 00111111000 011 244555553 35789999997 89
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|.+.+ +++|.++|++||++||+||+++ +|.. ........+|++++| |.+ |+ .++|++++++++.+
T Consensus 175 ptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~----~~~~~~~~~di~~~s~sK~~-g~-~g~G~~~~~~~~~~ 243 (423)
T 3lvm_A 175 EIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL----PIDLSQLKVDLMSFSGHKIY-GP-KGIGALYVRRKPRV 243 (423)
T ss_dssp TTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTS----CCCTTTSCCSEEEEESTTTT-SC-SSCEEEEECBTTBC
T ss_pred CCccccC----HHHHHHHHHHcCCEEEEEhhhh-cCCC----CcChhhcCCCEEEechHHhc-CC-CCeEEEEEeccccC
Confidence 9998877 8999999999999999999985 3322 122223458998776 954 44 56999999987766
Q ss_pred hhhcCCcccee-ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc----cc
Q 002941 710 SFVGDSKLKAL-LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA----LG 784 (863)
Q Consensus 710 ~l~~~~~~~~~-~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg----~G 784 (863)
.+......... ....+.+.++.+++++.++++.+++. .+++.++.+.+++.+. +.+.+.|.+.-+.. .+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~ 317 (423)
T 3lvm_A 244 RIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMERLRGLRNRLW----NGIKDIEEVYLNGDLEHGAP 317 (423)
T ss_dssp CCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHTTSTTEEEESCSTTBCT
T ss_pred CCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHhcCCCEEEeCCccccCC
Confidence 55431000000 01223456788888888999877542 3455555555555443 33455655433322 24
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid 840 (863)
.++.+.+.... ...+.+.|.+ |.+.+. ++.+|+.++..+++++++
T Consensus 318 ~~~~~~~~~~~---------~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~ 386 (423)
T 3lvm_A 318 NILNVSFNYVE---------GESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 386 (423)
T ss_dssp TEEEEEETTSC---------HHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred CeEEEEeCCCC---------HHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHH
Confidence 57777774322 4456666666 655542 378999999889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEFDK 855 (863)
Q Consensus 841 ~~v~~L~~~l~~l~~ 855 (863)
+++++|+++++++.+
T Consensus 387 ~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 387 YTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988765
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=202.01 Aligned_cols=327 Identities=12% Similarity=0.037 Sum_probs=209.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-+|+|.+|+.+++.. +.. ....+...++.++|+++++....+.++|++||++|++.+++.+++ .|
T Consensus 34 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~---------~g-- 98 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQ--KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE---------PG-- 98 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC---------TT--
T ss_pred CCHHHHHHhcccccC--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC---------CC--
Confidence 478888888765321 111 012345678899999988754223599999999999999987621 12
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+||+...+|||.....+ ...|. .+..++.+...
T Consensus 99 ----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~~~~~~~~------- 133 (393)
T 3kgw_A 99 ----------DSFLTGTNGIWGMRAAEIADRIGA----------------------------RVHQMIKKPGE------- 133 (393)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CEEEEEeCCchhHHHHHHHHHcCC----------------------------ceEEEeCCCCC-------
Confidence 578888888886532211 11110 00111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
..| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|+++|++||+
T Consensus 134 --------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 179 (393)
T 3kgw_A 134 --------------HYT--------LQEVEEGLAQ-------HKPVLLFLVHG-ESSTGVVQP----LDGFGELCHRYQC 179 (393)
T ss_dssp --------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred --------------CCC--------HHHHHHHHhh-------CCCcEEEEecc-CCcchhhcc----HHHHHHHHHHcCC
Confidence 011 2456666642 24678888887 999998776 8899999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc-ccee------------
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK-LKAL------------ 720 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~------------ 720 (863)
+||+||+++ +| +..+..+.++ +|+++++ |+++|+ .++|++++++++++.+..... ...+
T Consensus 180 ~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
T 3kgw_A 180 LLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAP-PGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWG 253 (393)
T ss_dssp EEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTT
T ss_pred EEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCC-CceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhh
Confidence 999999995 43 2233344433 5887665 999887 689999999999998864210 0000
Q ss_pred ----ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eE-ecccceEEEEEEccC
Q 002941 721 ----LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QR-VVALGTLCAIELQAA 794 (863)
Q Consensus 721 ----~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~-vrg~Gl~~~iel~~~ 794 (863)
....+++.++.+++++.++++.+++.. .+++.+..+.+++.+.+.+.+. ....+ .+ ....+.++.+.+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 3kgw_A 254 CEGETRVIHHTTPVTSLYCLRESLALIAEQG-LENCWRRHREATAHLHKHLQEM--GLKFFVKDPEIRLPTITTVTVPAG 330 (393)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGGGBCSSEEEEECCTT
T ss_pred hccccCCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcCCeEEEEeCCCC
Confidence 012245568889999999999875432 2344444455555444443332 22211 11 123356777777532
Q ss_pred CcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
. ...++.+.|+++ ||++++. ++.+|+.+ +..++++++++++++|+++++++.
T Consensus 331 ~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 331 Y--------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp B--------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred C--------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 1 256788899888 9999863 47999997 666799999999999999987653
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=201.88 Aligned_cols=341 Identities=14% Similarity=0.057 Sum_probs=210.2
Q ss_pred eEEeeecccccccCC--CCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhc-CCC-CCCeEEE--eCChhh
Q 002941 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV-GKG-WASRAYF--SDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lG--h~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~-p~~-~~~~v~f--~~SGSe 472 (863)
.++|+.+|...+..| + .+|.|.+|+.+++++... ..+. .....+|.++|++++ +.+ ..++++| +++|++
T Consensus 27 ~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~ 102 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTP-IMRAVHAAEQRMLETETT---KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTG 102 (394)
T ss_dssp TCEECCCCSCCCTTSCCC-CCHHHHHHHHHHHHHCCC---CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHH
T ss_pred cccccccceeeCCCCCcc-CcHHHHHHHHHhcCCccc---CCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchh
Confidence 689999887755554 3 579999999998865211 1121 122345666666554 210 1368999 999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++++ +.+. . | .+|++...+||+....+...+..
T Consensus 103 a~~~~~~~~-~~~~--~----g------------d~vl~~~p~~~~~~~~~~~~g~~----------------------- 140 (394)
T 2ay1_A 103 ALRQALELA-RMAN--P----D------------LRVFVSDPTWPNHVSIMNFMGLP----------------------- 140 (394)
T ss_dssp HHHHHHHHH-HHHC--T----T------------CCEEEEESCCHHHHHHHHHHTCC-----------------------
T ss_pred HHHHHHHHH-HhcC--C----C------------CEEEEcCCCChhHHHHHHHcCCc-----------------------
Confidence 999999987 3231 1 2 46999999999976544332210
Q ss_pred ccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 553 VFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 553 ~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
+..++.. +.+ ..| .+.+++.+++ .+...+++++... +
T Consensus 141 ------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~~~~~~~-~ 179 (394)
T 2ay1_A 141 ------VQTYRYFDAETR---------------------GVD--------FEGMKADLAA-----AKKGDMVLLHGCC-H 179 (394)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHHT-----CCTTCEEEEESSS-C
T ss_pred ------eEEEecccccCC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 0011110 000 011 2456666653 1233556666665 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--CcchhhhcC-CCCcEE---EeccccC-CCCCCceeeec
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLG-CVPDIA---CYGKLLT-GGVIPLAATLA 703 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~a~e~~g-v~PDiv---t~sKgLg-gG~~Pigav~~ 703 (863)
+..|. +++.+++++|.++|++||+++|+||+|++|++.| .......+. ..+|++ ++||+++ +| +++|++++
T Consensus 180 nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~ 257 (394)
T 2ay1_A 180 NPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLA 257 (394)
T ss_dssp TTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEE
T ss_pred CCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC-CccceEEE
Confidence 88886 5688999999999999999999999999997754 222333221 234543 7899998 78 89999998
Q ss_pred ---cHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc-C---hhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 704 ---TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK-D---PQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 704 ---~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~-~---~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
++++++.+...- . ..+..++. .++++++++.++|+... . ++..+++.+..+..++.+.+.+.+.....
T Consensus 258 ~~~~~~~~~~l~~~~--~-~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~- 333 (394)
T 2ay1_A 258 LCADAATRELAQGAM--A-FLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD- 333 (394)
T ss_dssp ECSSHHHHHHHHHHH--H-HHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred EeCCHHHHHHHHHHH--H-HHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 776655433200 0 01224444 48999999999887431 0 12344555555555555554444332110
Q ss_pred CeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 776 TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 776 ~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+..+. ..|+++.+++. ...+...|.++||++.+. +|+.++ .++++++++++++|+++
T Consensus 334 ~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gi~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 334 RFGFVAEHRGMFSRLGAT------------PEQVKRIKEEFGIYMVGD---SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp TTTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred CeeEEcCCceEEEeeCCC------------HHHHHHHHHhCCEEecCC---CeEEee-cCCHhhHHHHHHHHHHc
Confidence 121122 23666555442 134666777999999874 477765 57999999999998765
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-20 Score=209.10 Aligned_cols=357 Identities=12% Similarity=0.026 Sum_probs=200.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
.|||+.+++++ |+|.+|+.+++..... .+ ..+...+|+++|+++++ .++++|++||++|++.|+
T Consensus 42 ~ylD~~~~~~~--------~~v~~a~~~~l~~~~~----~y~~~~~~~~l~~~la~~~~---~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 42 VFIDLLTDSGT--------GAVTQSMQAAMMRGDE----AYSGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCSSC--------SCCCHHHHHHTTSCCC----CSSSCHHHHHHHHHHHHHHC---CSEEEEEC--CCSHHHHH
T ss_pred eeEecccCCCc--------HHHHHHHHHHhccCcc----eeccCchhHHHHHHHHHHhC---cCcEEEcCCcHHHHHHHH
Confidence 79999875544 7788888888753211 22 34567899999999997 478999999999999999
Q ss_pred HHHHHHH-HhhccccccccCCCccccccccEEEEecCCCccCccccceecC-CCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 479 KMAFRKF-SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 479 klA~r~~-~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++++ . +..+|.+ | +..||.. .||+.+..+..... .....+. . ...++. .
T Consensus 107 ~~~~~-~~~~~~G~~--~----------~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~------~--~~~~~~-~---- 158 (467)
T 2oqx_A 107 PVLIK-KREQEKGLD--R----------SKMVAFS--NYFFDTTQGHSQINGCTVRNVY------I--KEAFDT-G---- 158 (467)
T ss_dssp HHHHH-HHHHHHCCC--T----------TTCEEEE--SSCCHHHHHHHHHTTCEEEECB------C--TTTTCT-T----
T ss_pred HHHhc-cccccCCCC--c----------cceEEec--ccccccchhhhhccCcceeecc------c--cccccC-C----
Confidence 99843 2 1111210 0 0336654 68977643332211 0000000 0 000000 0
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...| ++...| .+.|++.+.+ .+.+++++|++||+ ++.+|..
T Consensus 159 -----~~~~---------------------~~~~~d--------~~~Le~~i~~----~~~~~~~~vi~~~~-~n~~gG~ 199 (467)
T 2oqx_A 159 -----VRYD---------------------FKGNFD--------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQ 199 (467)
T ss_dssp -----SCCT---------------------TTTCBC--------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCB
T ss_pred -----CCCC---------------------ccCCcC--------HHHHHHHHHh----cCCCceeEEEEecc-ccCCCCc
Confidence 0000 000012 2456666752 11246899999997 8886557
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeccccc----------ccccCCc---chhhhcCCCCcE--EEeccccCCCCCCceee
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVE---TTADLLGCVPDI--ACYGKLLTGGVIPLAAT 701 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TG----------fGRtG~~---~a~e~~gv~PDi--vt~sKgLggG~~Pigav 701 (863)
+++.+++++|+++|++||++||+|++|.. .+..|.. ++.+.+ ..+|+ ++++|+++ +|+|++
T Consensus 200 ~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g---~~~Gg~ 275 (467)
T 2oqx_A 200 PVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAM---VPMGGL 275 (467)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTC---CSSCEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccC---CCCceE
Confidence 78899999999999999999999977643 1344432 221100 12455 46689885 466554
Q ss_pred -eccHH-HHHhhhcCCccc-eeecccCCCccHHHHHHHHH-HHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 702 -LATNA-VFDSFVGDSKLK-ALLHGHSYSAHALGCAAAAK-SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 702 -~~~~~-i~~~l~~~~~~~-~~~~~~T~~~~pla~AAalA-aL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
+++++ +++.+..-.... ......++++.+..+.++++ .++...+++..++..++.+++.+.| .+. ..+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L----~~~--~~~~~ 349 (467)
T 2oqx_A 276 LCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGL----EEI--GVVCQ 349 (467)
T ss_dssp EEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----HHT--TCCEE
T ss_pred EEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHH----HHC--CCeee
Confidence 55656 444332100000 00011234443333333332 2333223333444455555555433 322 34444
Q ss_pred eEecccceEEEEEEcc--CCcCCCCchHH-HHHHHHHH-HHCCcEEEecC------------------CEEEEecCCC-C
Q 002941 778 QRVVALGTLCAIELQA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPLG------------------NVIYLMCGPC-S 834 (863)
Q Consensus 778 ~~vrg~Gl~~~iel~~--~~~~~~~~~~~-~~~l~~~l-~e~GV~~~p~g------------------~~lr~~ppl~-~ 834 (863)
..+ |.++.+.+.. .... .... +..++..| .++||++.|.+ +.+|+.++.. +
T Consensus 350 -~~~--~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~ 423 (467)
T 2oqx_A 350 -QAG--GHAAFVDAGKLLPHIP---ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATY 423 (467)
T ss_dssp -EEC--SSCEEEEHHHHSTTSC---GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTS
T ss_pred -cCC--ceEEEEechhhcccCC---cccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCC
Confidence 443 4455555532 1100 0111 45678888 89999998732 6899999988 9
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l~ 854 (863)
|+++|++++++|+++++++.
T Consensus 424 t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 424 TQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp CHHHHHHHHHHHHHHHHSGG
T ss_pred CHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999987654
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=197.10 Aligned_cols=324 Identities=12% Similarity=0.078 Sum_probs=210.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCC--CeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~--~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
-+|+|.+|+.+++.... .....+...++.++|+++++.+ . +.++|++||++|++ +++.+++ .
T Consensus 13 ~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~~~---------~- 76 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT----SKEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSLLK---------P- 76 (384)
T ss_dssp CCHHHHHHTTCCSCCTT----SHHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGGCC---------T-
T ss_pred CCHHHHHHhhccccccc----cHHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhhcC---------C-
Confidence 36888888877653211 1112456778899999988754 3 56999999999999 8875520 1
Q ss_pred ccCCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
..+||+.+.+|||.....+.. .|. .+..++.+..+
T Consensus 77 -----------gd~vi~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~----- 112 (384)
T 3zrp_A 77 -----------NDKILVVSNGVFGDRWEQIFKRYPV----------------------------NVKVLRPSPGD----- 112 (384)
T ss_dssp -----------TCEEEEECSSHHHHHHHHHHTTSSC----------------------------EEEEECCSTTC-----
T ss_pred -----------CCEEEEecCCcchHHHHHHHHHcCC----------------------------cEEEecCCCCC-----
Confidence 257999999999964332211 010 01112211100
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
..| .+.+++.+.+ .++.+|+++++ ++..|.+.+ +++|.++|++|
T Consensus 113 ----------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~ 156 (384)
T 3zrp_A 113 ----------------YVK--------PGEVEEEVRK-------SEYKLVALTHV-ETSTGVREP----VKDVINKIRKY 156 (384)
T ss_dssp ----------------CCC--------HHHHHHHHHH-------SCEEEEEEESE-ETTTTEECC----HHHHHHHHGGG
T ss_pred ----------------CCC--------HHHHHHHHHh-------CCCcEEEEeCC-CCCCceECc----HHHHHHHHHhc
Confidence 011 2456666652 24788999987 999998876 89999999999
Q ss_pred CCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhh-hcCCc---------cce--
Q 002941 654 KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF-VGDSK---------LKA-- 719 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l-~~~~~---------~~~-- 719 (863)
|+++|+||+++ +|.. ...... ..+|+++++ |+++|+ .++|++++++++++.+ ..... ...
T Consensus 157 ~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (384)
T 3zrp_A 157 VELIVVDGVSS-VGAE--EVKAEE--WNVDVYLTASQKALGSA-AGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVM 230 (384)
T ss_dssp EEEEEEECTTT-TTTS--CCCTTT--TTCSEEEEETTSTTCCC-SSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHH
T ss_pred CCEEEEECccc-ccCc--cccccc--cCCCEEEecCcccccCC-CceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 99999999995 4322 112222 247888665 999887 6899999999998877 21100 000
Q ss_pred --ee--cccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEEc
Q 002941 720 --LL--HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIELQ 792 (863)
Q Consensus 720 --~~--~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel~ 792 (863)
+. ....+ +.++.++++..++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+.. ....+.++.+.+.
T Consensus 231 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~ 307 (384)
T 3zrp_A 231 RGAEEGKAAYFATPPVHVILQLAEAFRLIEKEG-IENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVTGVILK 307 (384)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEEEEECS
T ss_pred HhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEEEEECC
Confidence 00 12223 457778888888888775432 2344444444555444443332 2222111 1234667777775
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEecC----CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g----~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
... ...+.+.|.++||++++.. +.+|+.++..++++++++++++|+++++++.
T Consensus 308 ~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 308 VAD---------PQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp SSC---------HHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCC---------HHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 422 5678999999999999876 7899998888999999999999999998763
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=184.84 Aligned_cols=213 Identities=22% Similarity=0.246 Sum_probs=157.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchhh
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (863)
+.|+|+++.+|+|||++|+.|+.+|. ++|+||.++||.++|....+. ++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la-----~~G~rVll~dp~~~~~~~~~~---------~~----------------- 50 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPE---------GL----------------- 50 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTT---------SC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCCEEEEcceecCCccCCC---------Cc-----------------
Confidence 46999999999999999999999999 899999999998876532110 00
Q ss_pred hhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhHH
Q 002941 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (863)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~~ 197 (863)
...+...+....... ......+++.+..|.+|++++..+ +.....+.+
T Consensus 51 ~~~d~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 98 (224)
T 1byi_A 51 RNSDALALQRNSSLQ-------------------------------LDYATVNPYTFAEPTSPHIISAQE-GRPIESLVM 98 (224)
T ss_dssp BCHHHHHHHHTCSSC-------------------------------CCHHHHCSEEESSCSCHHHHHHHH-TCCCCHHHH
T ss_pred ChHHHHHHHHHhCCC-------------------------------CChhhcccEEeCCCCCHHHHHHHc-CCCCCHHHH
Confidence 000000000000000 000113467788899999887766 666778888
Q ss_pred HHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhC
Q 002941 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (863)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~ 277 (863)
.+.++++.++| |++||||+||+.+|+.....++++++.++.|||+|+....+++++++.+++.++..
T Consensus 99 ~~~l~~l~~~y-------------D~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~ 165 (224)
T 1byi_A 99 SAGLRALEQQA-------------DWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHA 165 (224)
T ss_dssp HHHHHHHHTTC-------------SEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------------CEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHC
Confidence 88888887776 99999999999999766678999999999999999999999999999999999999
Q ss_pred CCcEEEEEEcCCCCC--CHHHHHHhhc--CCCCeee-cCCCCC-CCchhhhhhhh
Q 002941 278 GYDVVAVVFEDHGLV--NEVPLMSYLR--NRVPVLV-LPPLPQ-DSSNDLMEWFD 326 (863)
Q Consensus 278 ~~~v~gvi~n~~~~~--~~~~~~~~~~--~~~pvl~-~p~~~~-~~~~~~~~~l~ 326 (863)
++++.|+|+|++... ......+.++ .++|+++ ||+.++ ....++.++++
T Consensus 166 ~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl~~Ip~~~~~~~~~~~~~~~~ 220 (224)
T 1byi_A 166 GLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYIN 220 (224)
T ss_dssp TCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEEEEECCCTTCTTCCCCGGGCC
T ss_pred CCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEEEECCCCcCCccHHHHHHHhc
Confidence 999999999998433 1222222222 4899999 999883 33335666664
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=196.20 Aligned_cols=322 Identities=10% Similarity=0.057 Sum_probs=203.5
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCC-CCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~-~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
-+|+|.+|+.+++.. +.. ....+...++.++|+++++.+. .+.+++++||++|++.+++.+++ +|
T Consensus 30 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~---------~g- 95 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT---------KK- 95 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC---------TT-
T ss_pred CcHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC---------CC-
Confidence 368888888776532 210 0112456778888888876431 13455689999999999987621 12
Q ss_pred cCCCccccccccEEEEecCCCccCcccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
.+||+...+||+........ .+.. +..++.+..+
T Consensus 96 -----------d~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 130 (376)
T 3f0h_A 96 -----------DKVLVIDGGSFGHRFVQLCEIHEIP----------------------------YVALKLEHGK------ 130 (376)
T ss_dssp -----------CCEEEEESSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTC------
T ss_pred -----------CeEEEEeCChhhHHHHHHHHHcCCc----------------------------eEEEeCCCCC------
Confidence 56899988888854321111 0100 0111111100
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+ ..++.+|+++++ ++..|.+.+ +++|.++|++||
T Consensus 131 ---------------~~d--------~~~l~~~~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 174 (376)
T 3f0h_A 131 ---------------KLT--------KEKLYEYD--------NQNFTGLLVNVD-ETSTAVLYD----TMMIGEFCKKNN 174 (376)
T ss_dssp ---------------CCC--------HHHHHTTT--------TSCCCEEEEESE-ETTTTEECC----HHHHHHHHHHTT
T ss_pred ---------------CCC--------HHHHHHhh--------ccCceEEEEecc-cCCcceecC----HHHHHHHHHHcC
Confidence 011 12333322 235677888886 899998876 999999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCcccee-e-----------c
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKAL-L-----------H 722 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~-~-----------~ 722 (863)
+++|+||+++++++. +..+.+|+...+.+++|+++|+ .++|++++++++++.+..... ..+ . .
T Consensus 175 ~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (376)
T 3f0h_A 175 MFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPRGVERVEKSKV-RTMYFDLKDALKNQERG 249 (376)
T ss_dssp CEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHHHHHHHHTCCC-CCSTTCHHHHHHHHTTT
T ss_pred CEEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHHHHHHhhcCCC-CceeecHHHHHhhcccC
Confidence 999999999765443 4456666544444567999876 688999999999988764210 000 0 1
Q ss_pred ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCc
Q 002941 723 GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYG 801 (863)
Q Consensus 723 ~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~ 801 (863)
+..++.+..+++++.++++.+++.+..+++.++.+.+++.+. +.+.+.+. +......+.++.+.....
T Consensus 250 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~~~~~------- 318 (376)
T 3f0h_A 250 QTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFR----AKIKDLPFELVSESPANGVTSVHPTTA------- 318 (376)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH----HHTTTSSEEECCSSBBTTEEEEEESSS-------
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHHcCCccCccccCceEEEEeCCCC-------
Confidence 223455566668888889887654334556666666666543 33444442 111112333444433211
Q ss_pred hHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 802 SLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 802 ~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
...++.+.|+++ ||++++. ++.+|+.++..+|++++++++++|+++++
T Consensus 319 --~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 319 --NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp --CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 256788899998 9999874 37899999889999999999999998875
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-19 Score=198.35 Aligned_cols=334 Identities=12% Similarity=0.001 Sum_probs=205.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHh-cccccC-CCC--CChHHHHHH----HHHHhhcCCCCCCeEEEeCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAAR-FGHVMF-PEN--VYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~-~~~~~~-~~~--~~~~~~eLa----e~L~~~~p~~~~~~v~f~~SGS 471 (863)
+|+|+.++... + +|+|.+|+.+++++ +.+... ..+ ..+....+. ++|+++++.+ ...++++||+
T Consensus 24 ~~i~~~~~~~~--~----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~--~~~i~~~sGt 95 (407)
T 2dkj_A 24 EGLELIASENF--V----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA--WANVQPHSGS 95 (407)
T ss_dssp TSEECCTTCCC--C----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred cceeeccCCCC--C----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC--cceEEecchH
Confidence 68888776533 2 59999999999865 322110 111 123222233 4788888742 2336778999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc--cccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT--LGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t--~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
+|++.|++.+++ .| .+|++...+||+.. ..++...|..
T Consensus 96 ~a~~~~~~~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~~~~g~~------------------- 135 (407)
T 2dkj_A 96 QANMAVYMALME---------PG------------DTLMGMDLAAGGHLTHGSRVNFSGKL------------------- 135 (407)
T ss_dssp HHHHHHHHHHCC---------TT------------CEEEEECGGGTCCGGGTCTTSHHHHH-------------------
T ss_pred HHHHHHHHHhcC---------CC------------CEEEEecccccCccchHHHHHhcCce-------------------
Confidence 999999987721 12 57999999887763 2222221100
Q ss_pred CCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccc
Q 002941 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPV 628 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPV 628 (863)
+..++++. + ..+...| .+.+++.+.+ .++.+|++ +|.
T Consensus 136 ---------~~~~~~~~--------------~----~~~~~~d--------~~~l~~~l~~-------~~~~~v~~~~p~ 173 (407)
T 2dkj_A 136 ---------YKVVSYGV--------------R----PDTELID--------LEEVRRLALE-------HRPKVIVAGASA 173 (407)
T ss_dssp ---------SEEEEECC--------------C----TTTSSCC--------HHHHHHHHHH-------HCCSEEEECCSS
T ss_pred ---------EEEEecCC--------------C----cccCccC--------HHHHHHHHhh-------cCCeEEEEeccc
Confidence 00011100 0 0000011 2455666642 13456666 886
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccc-ccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeecc-
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT- 704 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TG-fGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~- 704 (863)
++ ... + +++|.++|++||++||+||+|++ +...|..... ++ .+|++ +++|+|+|+ ++|+++++
T Consensus 174 -~~---~~~-~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~g~--~~G~~~~~~ 240 (407)
T 2dkj_A 174 -YP---RFW-D---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP-YAHVVTSTTHKTLRGP--RGGLILSND 240 (407)
T ss_dssp -CC---SCC-C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT-TCSEEEEESSGGGCCC--SCEEEEESC
T ss_pred -cC---CCC-C---HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc-cccEEEEeccccCCCC--CceEEEECC
Confidence 43 333 2 89999999999999999999975 5445543211 12 27888 789999864 57999999
Q ss_pred HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 002941 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG 784 (863)
Q Consensus 705 ~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G 784 (863)
+++++.+... ..++.+.+.++..++++.++|+.+.+. ..+++.++.+.+++.+.+.+.+. ..+.+.. ++.|
T Consensus 241 ~~~~~~l~~~-----~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~~~~ 311 (407)
T 2dkj_A 241 PELGKRIDKL-----IFPGIQGGPLEHVIAGKAVAFFEALQP-EFKEYSRLVVENAKRLAEELARR--GYRIVTG-GTDN 311 (407)
T ss_dssp HHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHT--TCEEGGG-SCSS
T ss_pred HHHHHHHHhh-----hcccccCCCcHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhC--CceeecC-CCCc
Confidence 8998877541 123445567888888888999876442 23344444445555444343322 2211111 4578
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCC----CCcHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl----~~t~eeid~~v~~L~~~ 849 (863)
.++.+++.... .....+.+.|.++||++.+. .+.+|+.++. .++++++++++++|+++
T Consensus 312 ~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 312 HLFLVDLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp SEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred eEEEEECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 89889886421 01456788899999999873 3579998665 38999999999999999
Q ss_pred HHH
Q 002941 850 LEE 852 (863)
Q Consensus 850 l~~ 852 (863)
+++
T Consensus 385 ~~~ 387 (407)
T 2dkj_A 385 LLE 387 (407)
T ss_dssp HHH
T ss_pred Hhc
Confidence 987
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=189.44 Aligned_cols=327 Identities=13% Similarity=0.044 Sum_probs=201.1
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
..|+ .+|+|.+|+.+++..+... .+..+...+++++|+++++.+ .++++|++||++|++.+++.+++
T Consensus 22 ~~~~-~~~~v~~a~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~~~~~-------- 88 (359)
T 1svv_A 22 YSVG-MHPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLALR-------- 88 (359)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHCC--------
T ss_pred CcCC-CCHHHHHHHHHHHhhcccc---ccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHHHHhC--------
Confidence 3455 7899999999998764432 345788899999999988744 46899999999999999998721
Q ss_pred cccccCCCccccccccEEEEecCCCccCccc-cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g-als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
+| .+|++...+||+.... .+...|. .+..++.++ +
T Consensus 89 -~g------------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~-~-- 124 (359)
T 1svv_A 89 -PW------------EAVIATQLGHISTHETGAIEATGH----------------------------KVVTAPCPD-G-- 124 (359)
T ss_dssp -TT------------EEEEEETTSHHHHSSTTHHHHTTC----------------------------CEEEECCTT-S--
T ss_pred -CC------------CEEEEcccchHHHHHHHHHhcCCC----------------------------eeEEEeCCC-C--
Confidence 12 5799999999986543 1111110 011111110 0
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+++.. ..++.++.+|++++. +..|.+. |.+++++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~l~~~~-~~~~~~~~~v~~~~~--~ptG~~~-~~~~l~~i~~~~ 173 (359)
T 1svv_A 125 -------------------KLR--------VADIESALHENR-SEHMVIPKLVYISNT--TEVGTQY-TKQELEDISASC 173 (359)
T ss_dssp -------------------CCC--------HHHHHHHHHHSC-STTSCEEEEEEEESS--CTTSCCC-CHHHHHHHHHHH
T ss_pred -------------------eec--------HHHHHHHHHHHH-hccCCCceEEEEEcC--CCCceec-CHHHHHHHHHHH
Confidence 011 245666665310 012335888989885 4677655 579999999999
Q ss_pred HHcCCeEEEecccccc--cccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCC
Q 002941 651 QNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY 726 (863)
Q Consensus 651 ~~~gilLI~DEV~TGf--GRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~ 726 (863)
++||+++|+||++++| |+++.....-..+..+|++++ .|. ||...+|++++++++++.+... ...+++++
T Consensus 174 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~--g~~~~~g~l~~~~~~~~~~~~~----~~~~~~~~ 247 (359)
T 1svv_A 174 KEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA--GGMFGEALIILNDALKPNARHL----IKQRGALM 247 (359)
T ss_dssp HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT--TCSSCEEEEECSGGGCTTHHHH----HHHTTCCC
T ss_pred HHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC--CCCCceEEEEEcccHHHHHHHH----HhcCCccc
Confidence 9999999999999776 555432111111135788865 674 4435668888898887766431 00133444
Q ss_pred CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHH
Q 002941 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 806 (863)
Q Consensus 727 ~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~ 806 (863)
..++...++..+ .+++.. .+++.+..+.+++.+.+.+ +. .....+. ...+.++.+.+. .
T Consensus 248 ~~~~~~~~~~~~---~l~~~~-~~~~~~~~~~~~~~l~~~L-~~-~~~~~~~--~~~~~~~~~~~~-------------~ 306 (359)
T 1svv_A 248 AKGWLLGIQFEV---LMKDNL-FFELGAHSNKMAAILKAGL-EA-CGIRLAW--PSASNQLFPILE-------------N 306 (359)
T ss_dssp TTTHHHHHHHHH---HTSTTH-HHHHHHHHHHHHHHHHHHH-HH-TTCCBSS--CCSSSEECBEEE-------------H
T ss_pred ccchhhHHHHHH---HHhhhh-HHHHHHHHHHHHHHHHHHh-cc-CCeEEcc--CCccceEEEEcC-------------H
Confidence 433333333222 344432 3445555555566555444 22 2222211 122334434332 2
Q ss_pred HHHHHHHHC-CcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 807 SLLKKLRED-GVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 807 ~l~~~l~e~-GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
++.+.|+++ ||++.+. .+.+|+.+++.++++++++++++|+++++++
T Consensus 307 ~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 307 TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 578889998 9998642 3689999888999999999999999887654
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-18 Score=192.43 Aligned_cols=214 Identities=12% Similarity=0.101 Sum_probs=149.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc----chhhhcCCCCcEEEeccccCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~----~a~e~~gv~PDivt~sKgLggG 694 (863)
++.+|++.|..++..|.+ .+.+.+++|.++|++||+++|+||++++|.+.|.. ......+....+.+|||.++.|
T Consensus 190 ~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G 268 (425)
T 2r2n_A 190 TPKFLYTVPNGNNPTGNS-LTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG 268 (425)
T ss_dssp CCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST
T ss_pred CceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc
Confidence 466777766447888865 57899999999999999999999999988666642 2222223334455889999988
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhh---HHhHHHHHHHHHHHHHHHHHHHH
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT---NHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l---~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+++|++++++++++.+.. .....+++.++++++++.++|+.+.++++ .+++++..+..++.+. +.+
T Consensus 269 -lRiG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~L 337 (425)
T 2r2n_A 269 -LRIGFLTGPKPLIERVIL------HIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAIL----AAA 337 (425)
T ss_dssp -TCCEEEEEEHHHHHHHHH------HHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred -cceEEEecCHHHHHHHHH------HHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 899999999999988764 12456788899999999999986533322 3333333333344333 333
Q ss_pred hc-CCCeeE--ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------CCEEEEecCCCCcHHH
Q 002941 772 SS-HRTVQR--VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 772 ~~-~p~v~~--vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------g~~lr~~ppl~~t~ee 838 (863)
.+ .|.+.. ....|+++.+++.... . ....+.+.|.++||++.|+ .+.+|+... ..++++
T Consensus 338 ~~~~~~~~~~~~p~~g~~~~~~~~~~~-----~--~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~-~~~~~~ 409 (425)
T 2r2n_A 338 DKWLTGLAEWHVPAAGMFLWIKVKGIN-----D--VKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFS-SASPEQ 409 (425)
T ss_dssp HHHCSSSEEECCCSBSSEEEEEETTCS-----C--CHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECS-SCCHHH
T ss_pred HHHCCCCeEEeCCCceEEEEEEeCCCC-----C--HHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeC-CCCHHH
Confidence 33 343322 2456788888886421 0 0122577888999999873 268999855 369999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEE 852 (863)
Q Consensus 839 id~~v~~L~~~l~~ 852 (863)
+++++++|.+++++
T Consensus 410 i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 410 MDVAFQVLAQLIKE 423 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=197.17 Aligned_cols=331 Identities=15% Similarity=0.035 Sum_probs=213.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC-eEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~-~v~f~~SGSeAvE~AL 478 (863)
.|+|..+ .++ .+|++.+|+.+++.. +.. ....+...+++++|+++++.+ .+ .++|++||++|++.++
T Consensus 35 ~~l~~~~------~~~-~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 35 RLLLGPG------PSN-AHPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CEECSSS------CCC-CCHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHH
T ss_pred ceeccCC------CCC-CCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCchHHHHHHHH
Confidence 6777432 334 679999998877643 111 012356778999999988753 35 7999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
+.+++ .| .+|++...+||+.+...+ ...|.
T Consensus 103 ~~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~~~g~---------------------------- 133 (393)
T 1vjo_A 103 ANAVE---------PG------------DVVLIGVAGYFGNRLVDMAGRYGA---------------------------- 133 (393)
T ss_dssp HHHCC---------TT------------CEEEEEESSHHHHHHHHHHHHTTC----------------------------
T ss_pred HhccC---------CC------------CEEEEEcCChhHHHHHHHHHHcCC----------------------------
Confidence 87721 12 579999999998422111 11110
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
.+..++.+..+ ..| .+.+++.+.+ .++.+|++++. ++..|.+.
T Consensus 134 ~~~~v~~~~~~---------------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~ 176 (393)
T 1vjo_A 134 DVRTISKPWGE---------------------VFS--------LEELRTALET-------HRPAILALVHA-ETSTGARQ 176 (393)
T ss_dssp EEEEEECCTTC---------------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEEC
T ss_pred ceEEEecCCCC---------------------CCC--------HHHHHHHHhh-------CCceEEEEecc-CCCcceec
Confidence 01111211100 011 2456666642 13557888886 89999887
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~ 715 (863)
+ +++|.++|++||+++|+||+++ +|... ... ....+|+++.| |+++++. ++|++++++++++.+....
T Consensus 177 ~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~~~--~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~ 246 (393)
T 1vjo_A 177 P----LEGVGELCREFGTLLLVDTVTS-LGGVP--IFL--DAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRR 246 (393)
T ss_dssp C----CTTHHHHHHHHTCEEEEECTTT-TTTSC--CCT--TTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCS
T ss_pred c----HHHHHHHHHHcCCEEEEECCcc-ccCcC--Ccc--cccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccC
Confidence 6 8899999999999999999996 76542 222 23468999876 9999884 8999999999998875310
Q ss_pred -ccceeec------------ccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec
Q 002941 716 -KLKALLH------------GHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV 781 (863)
Q Consensus 716 -~~~~~~~------------~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr 781 (863)
....+.+ ..++ +.++++++++.++|+.+.+. ..+++.+..+.+++.+.+.+.+. ..+.+. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~ 322 (393)
T 1vjo_A 247 TKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE-GLANCWQRHQKNVEYLWERLEDI--GLSLHV-EK 322 (393)
T ss_dssp SCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT--TCCBSS-CG
T ss_pred CCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHc--CCcccC-Cc
Confidence 0001111 2244 67899999999999986432 13344444444555444444332 232221 12
Q ss_pred c--cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHH
Q 002941 782 A--LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 782 g--~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l 850 (863)
+ .+.++.+.+.... ....+.+.|.++ ||++.+. .+.+|+.+ ++..+++++++++++|.+++
T Consensus 323 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 323 EYRLPTLTTVCIPDGV--------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp GGBCSSEEEEECCTTC--------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEcCCCC--------CHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 2 3456677664221 146788899988 9999874 37899984 45678889999999998875
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-19 Score=192.45 Aligned_cols=340 Identities=12% Similarity=0.017 Sum_probs=211.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
+++|+..| +.+ .+|+|.+|+.+++ .+.. ..+.++...++.++|+++++.. ..+.++|++||++|++.++
T Consensus 4 ~~~~~~~g----p~~--~~~~v~~a~~~~~---~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG----PLT--TSRTVKEAMLFDS---CTWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS----SCC--CCHHHHHTTCCCC---CTTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccccCC----CcC--CCHHHHHHHhhhh---cCCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHH
Confidence 45676655 333 5799999998753 2211 0112256788999999988731 1237999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
+.+++ +| .+||+....||+.+...+. ..|..
T Consensus 74 ~~~~~---------~g------------d~vi~~~~~~~~~~~~~~~~~~g~~--------------------------- 105 (366)
T 1m32_A 74 GSALG---------PQ------------DKVLIVSNGAYGARMVEMAGLMGIA--------------------------- 105 (366)
T ss_dssp HHSCC---------TT------------CCEEEEESSHHHHHHHHHHHHHTCC---------------------------
T ss_pred HHhcC---------CC------------CeEEEEeCCCccHHHHHHHHHhCCc---------------------------
Confidence 87721 12 4588888888986432211 11100
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+..++.+..+ ..| .+.+++.+.+ + .++.+|++... ++..|.+.
T Consensus 106 -~~~v~~~~~~---------------------~~d--------~~~l~~~l~~-----~-~~~~~v~~~~~-~nptG~~~ 148 (366)
T 1m32_A 106 -HHAYDCGEVA---------------------RPD--------VQAIDAILNA-----D-PTISHIAMVHS-ETTTGMLN 148 (366)
T ss_dssp -EEEEECCTTS---------------------CCC--------HHHHHHHHHH-----C-TTCCEEEEESE-ETTTTEEC
T ss_pred -eEEEeCCCCC---------------------CCC--------HHHHHHHHhc-----C-CCeEEEEEecc-cCCcceec
Confidence 0111111000 011 2456666653 1 12344444443 67788877
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHhhhcCC
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGDS 715 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~l~~~~ 715 (863)
+ +++|.++|++||+++|+||+|+ +|... +..+. ..+|+++ ++|+++|+ .++|++++++++++.+....
T Consensus 149 ~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~ 218 (366)
T 1m32_A 149 P----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHS 218 (366)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCC
T ss_pred C----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCC-CceEEEEECHHHHHhhcCCC
Confidence 6 8999999999999999999995 55543 12222 2478875 57999877 57899999999988765421
Q ss_pred cccee-----e-------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cc
Q 002941 716 KLKAL-----L-------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VA 782 (863)
Q Consensus 716 ~~~~~-----~-------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg 782 (863)
....+ + ....++.++.+++++.++|+.+++.+..+++.+..+.+++.+.+.+.+. ....+... ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~ 296 (366)
T 1m32_A 219 RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFNTLLDDELH 296 (366)
T ss_dssp SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCCBSSCGGGB
T ss_pred CCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCeeccCchhc
Confidence 10000 0 0113678999999999999987543212334444444455444443332 22221111 12
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.|.++.+.+.+.. . .....+.+.|.++||++++. .+.+|+.++..++++++++++++|++++++
T Consensus 297 ~~~~~~~~~~~~~---~---~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 297 SPIITAFYSPEDP---Q---YRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp CSSEEEEECCCCT---T---CCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCccC---C---CCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 4668888875310 0 02567889999999999874 378999988888999999999999887653
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=201.53 Aligned_cols=315 Identities=10% Similarity=0.002 Sum_probs=201.3
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEeCChhhHHH--HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccc
Q 002941 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIE--IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (863)
Q Consensus 445 ~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE--~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~g 522 (863)
..+|.+.|+++++.. .+.++|+++|++|+. .+++...+ . ..|. .+ + -.....+|++...+||+....
T Consensus 72 ~~~lr~~ia~~~~~~-~~~i~~t~G~~~al~~~~~~~~l~~-~--~~g~--~~-~----~~~~gd~Vlv~~p~y~~~~~~ 140 (423)
T 3ez1_A 72 LPSARALFAGYLDVK-AENVLVWNNSSLELQGLVLTFALLH-G--VRGS--TG-P----WLSQTPKMIVTVPGYDRHFLL 140 (423)
T ss_dssp CHHHHHHHHHHTTSC-GGGEEECSSCHHHHHHHHHHHHHHT-C--CTTC--SS-C----GGGGCCEEEEEESCCHHHHHH
T ss_pred hHHHHHHHHHHhCCC-hhhEEEeCCcHHHHHHHHHHHHHhc-c--CCCc--cc-c----ccCCCCEEEEcCCCcHHHHHH
Confidence 567888898888643 468999999999997 77776521 0 0110 00 0 000015799999999987544
Q ss_pred cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHH
Q 002941 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (863)
Q Consensus 523 als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 602 (863)
....+. ..+++|... ..-| .+
T Consensus 141 ~~~~g~-------------------------------~~~~v~~~~--------------------~g~d--------~~ 161 (423)
T 3ez1_A 141 LQTLGF-------------------------------ELLTVDMQS--------------------DGPD--------VD 161 (423)
T ss_dssp HHHHTC-------------------------------EEEEEEEET--------------------TEEC--------HH
T ss_pred HHHcCC-------------------------------EEEeccCCC--------------------CCCC--------HH
Confidence 332211 001111000 0011 24
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH-HHcCCeEEEecccccccccC-------Ccch
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLG-------VETT 674 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc-~~~gilLI~DEV~TGfGRtG-------~~~a 674 (863)
.+++.+++ ..++.+|+++|..++..|.+. +.+.+++|.++| ++||+++|+||+|+.+...+ ..+.
T Consensus 162 ~l~~~l~~------~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 234 (423)
T 3ez1_A 162 AVERLAGT------DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVV 234 (423)
T ss_dssp HHHHHHHS------CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHH
T ss_pred HHHHHHhh------CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhh
Confidence 56666641 246788888875578888655 667799999999 99999999999998432222 1222
Q ss_pred h----hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 675 A----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 675 ~----e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
. +..+....+.+|||.+.+| +++|++++++++++.+.. ..+..+++.++++++++.++|+.+. +.+.+
T Consensus 235 ~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~ 306 (423)
T 3ez1_A 235 LARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNIRWLSK------YLGAQSIGPNKVEQARHVKFLTEYP-GGLEG 306 (423)
T ss_dssp HHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHHHHHHH------HHHHSCSCCCHHHHHHHHHHHHHST-THHHH
T ss_pred hhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHHhcc-chHHH
Confidence 2 1223333466899987778 899999999999998864 2345678889999999998888521 22222
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHhcCC-CeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---
Q 002941 751 NIIPER---RILRELWDLELIQQISSHR-TVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--- 822 (863)
Q Consensus 751 ~l~~~~---~~l~~~l~~~l~~~~~~~p-~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--- 822 (863)
.+.+.. +..++.+.+.+.+.+...+ .+.. ....|+++.+++.... ...+...|.++||++.|.
T Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~---------~~~~~~~l~~~gv~v~~~g~~ 377 (423)
T 3ez1_A 307 LMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPV---------ADRVVKLAEAAGVSLTPAGAT 377 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSC---------HHHHHHHHHHTTEECCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCc---------HHHHHHHHHHCCcEEecCccc
Confidence 232222 2233333334444444444 2322 2346788888886432 456788899999999882
Q ss_pred --------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 823 --------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 823 --------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+.+|+.++.. +++++++++++|.++++++.
T Consensus 378 ~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 378 YPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp SSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 27899987544 99999999999999998765
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-19 Score=197.17 Aligned_cols=326 Identities=12% Similarity=0.021 Sum_probs=208.3
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-+|+|.+|+.+++. .+.. ....+...++.++|+++++.+..+.++|++||++|++.+++.+++ .
T Consensus 24 ~~~~v~~a~~~~~~--~~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~---------~--- 87 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI--GQYD--PAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR---------P--- 87 (411)
T ss_dssp CCHHHHHHHTSCCC--CTTC--HHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC---------T---
T ss_pred CCHHHHHHhhcccc--cccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC---------C---
Confidence 46888888876541 1110 011245678899999988754222388999999999999987721 1
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
..+||+...+|||...... ...|. .+..++.+..+
T Consensus 88 ---------gd~Vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 123 (411)
T 3nnk_A 88 ---------GDKVLVPVFGRFGHLLCEIARRCRA----------------------------EVHTIEVPWGE------- 123 (411)
T ss_dssp ---------TCEEEEEECSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ---------CCEEEEecCCchHHHHHHHHHHcCC----------------------------eEEEEecCCCC-------
Confidence 2679999999998532211 11110 01112221100
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
.-| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|.++|++||+
T Consensus 124 --------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 169 (411)
T 3nnk_A 124 --------------VFT--------PDQVEDAVKR-------IRPRLLLTVQG-DTSTTMLQP----LAELGEICRRYDA 169 (411)
T ss_dssp --------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHHTC
T ss_pred --------------CCC--------HHHHHHHHhh-------CCCeEEEEeCC-CCCcceecc----HHHHHHHHHHcCC
Confidence 011 2456666642 25678888987 999998876 8899999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCccceeec-----------
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLH----------- 722 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~----------- 722 (863)
++|+||+++ +|.. .+..+.++ +|++++ +|+++|+ .++|++++++++++.+.......+.++
T Consensus 170 ~li~Dea~~-~~~~--~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~ 243 (411)
T 3nnk_A 170 LFYTDATAS-LGGN--PLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243 (411)
T ss_dssp EEEEECTTT-BTTB--CCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCC
T ss_pred EEEEECCcc-cCCc--ccchhccC--CcEEEecCccccCCC-CceEEEEECHHHHHHHhhcccccccccccccccccCCC
Confidence 999999985 4322 23333333 677765 5998887 689999999999988764220011111
Q ss_pred -------------------ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecc
Q 002941 723 -------------------GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-VVA 782 (863)
Q Consensus 723 -------------------~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg 782 (863)
..+++.++.+++++.++++.+.+.+ .+++.+..+.+++.+.+.+.+. ....+.. ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~ 320 (411)
T 3nnk_A 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEG-LDYGIARHKLHGDALVKGIQAM--GLETFGDLKHK 320 (411)
T ss_dssp CSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBCSCGGGB
T ss_pred CcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCEeCCCcccc
Confidence 1223457888888889998875432 2334444444555444444332 2221111 123
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.++.+.+.+.. ...++.+.|+++ ||.+++. ++.+|+.+ +..++++++++++++|+++++++
T Consensus 321 ~~~~~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 321 MNNVLGVVIPQGI--------NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp CSSEEEEECCTTC--------CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCC--------CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 5677778775321 156788888887 9999873 47999997 77789999999999999998765
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=197.61 Aligned_cols=332 Identities=11% Similarity=0.066 Sum_probs=214.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc---cc---cCCCCCChHHHHHHHH-HHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HV---MFPENVYEPALECAEL-LLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~---~~---~~~~~~~~~~~eLae~-L~~~~p~~~~~~v~f~~SGSe 472 (863)
.|||+.. +.++ .+|++.+|+.+++.... +. .......+...+|.++ |+++++. +.++|+++|++
T Consensus 10 i~ld~~~-----~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~---~~v~~~~g~t~ 80 (371)
T 2e7j_A 10 INIDPLQ-----TGGK-LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVTNGARE 80 (371)
T ss_dssp EECCHHH-----HTCC-CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS---SEEEEESSHHH
T ss_pred EEecccc-----cCCC-CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC---CEEEEeCChHH
Confidence 5666532 3344 57999999999887642 10 1112345678899999 9999884 38999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.+++.+++ .| .+|++...+||+....+ ...|..
T Consensus 81 a~~~~~~~~~~---------~g------------d~vl~~~~~~~~~~~~~-~~~g~~---------------------- 116 (371)
T 2e7j_A 81 AKFAVMHSLAK---------KD------------AWVVMDENCHYSSYVAA-ERAGLN---------------------- 116 (371)
T ss_dssp HHHHHHHHHCC---------TT------------CEEEEETTCCHHHHHHH-HHTTCE----------------------
T ss_pred HHHHHHHHHhC---------CC------------CEEEEccCcchHHHHHH-HHcCCe----------------------
Confidence 99999997721 11 57999999999876552 221100
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++.|... +..-| .+.+++.+.+. ...+++.+|++++. ++.
T Consensus 117 ------~~~v~~~~~~-------------------~~~~d--------~~~l~~~l~~~---~~~~~~~~v~~~~~-~np 159 (371)
T 2e7j_A 117 ------IALVPKTDYP-------------------DYAIT--------PENFAQTIEET---KKRGEVVLALITYP-DGN 159 (371)
T ss_dssp ------EEEECCCCTT-------------------TCCCC--------HHHHHHHHHHH---TTTSCEEEEEEESS-CTT
T ss_pred ------EEEeecccCC-------------------CCCcC--------HHHHHHHHHhh---cccCCeEEEEEECC-CCC
Confidence 0111110000 00011 24455666421 00146788999997 999
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~~i~~~ 710 (863)
.|.+.+ +++|.++|++||+++|+||+++. |..+ +....++ +|+++ ++|+++++ .++|++++++++++.
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~ 229 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAI-GRMP--VSLKEIG--ADFIVGSGHKSMAAS-GPIGVMGMKEEWAEI 229 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTB-TTBC--CCHHHHT--CSEEEEEHHHHSSCC-SSCEEEEECTTTTTT
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECcccc-CCCC--CChhhcC--CCEEEecCCcCCCCC-CCcEEEEEechhhhh
Confidence 998876 69999999999999999999964 4443 2233444 68775 59999988 599999999988776
Q ss_pred -hhcCCccceeeccc-----CCCccHHHHHHHHHHHHHhcChhhHHhH--HHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 002941 711 -FVGDSKLKALLHGH-----SYSAHALGCAAAAKSIKWFKDPQTNHNI--IPERRILRELWDLELIQQISSHRTVQRVVA 782 (863)
Q Consensus 711 -l~~~~~~~~~~~~~-----T~~~~pla~AAalAaL~~l~~~~l~~~l--~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg 782 (863)
+..... .... +++.++.+++++.++++.+++ ++.+++ .++.+++.+.| .+. ....+....+
T Consensus 230 ~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L----~~~--~~~~~~~~~~ 298 (371)
T 2e7j_A 230 VLRRSEK----YKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEM----EKL--GIKQLGDNPH 298 (371)
T ss_dssp TTCBCSS----CTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHH----HHT--TCEEESSSSC
T ss_pred hcccccc----CcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHc--CcEEecCCCc
Confidence 653210 0122 566788899999999988755 555566 55555555433 221 2221211112
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe--------c--CCEEE-EecCCC-CcHHHHHHHHHHHHHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP--------L--GNVIY-LMCGPC-SSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p--------~--g~~lr-~~ppl~-~t~eeid~~v~~L~~~l 850 (863)
.|.++.+.+. . ...+.+.|.++||++.| . .+.+| +.++.. ++++++++++++|++++
T Consensus 299 ~~~~~~~~~~--~---------~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 299 NHDLMFFHAE--V---------LYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp CSSEEEEECH--H---------HHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEECC--C---------HHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHH
Confidence 4778888775 1 45678888899998876 1 35678 877776 89999999999999887
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
+++
T Consensus 368 ~~~ 370 (371)
T 2e7j_A 368 EKY 370 (371)
T ss_dssp HHC
T ss_pred Hhc
Confidence 653
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=191.38 Aligned_cols=331 Identities=13% Similarity=0.051 Sum_probs=203.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCC-ChHHHHHHHHHHhhc--C-CCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV--G-KGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~--p-~~~~~~v~f~~SGSeAv 474 (863)
+++|+.++.. .++ .+|.|.+|+.+++++..... ...+. .....+|.++|++++ + .. .+.++|++++++|+
T Consensus 34 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al 108 (400)
T 3asa_A 34 TVINLSIGDT--TQP--LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDL 108 (400)
T ss_dssp CCEECSSCCC--CCC--CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHH
T ss_pred ceEeccCCCC--CCC--CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHH
Confidence 6777766542 333 47999999999998754321 11232 234567888888873 4 22 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.++++. + .| .+|++...+||+....+. ..|..
T Consensus 109 ~~~~~~~-~---------~g------------d~Vl~~~p~y~~~~~~~~-~~g~~------------------------ 141 (400)
T 3asa_A 109 FRLLSFF-G---------PN------------QTVAIQDPSYPAYLDIAR-LTGAK------------------------ 141 (400)
T ss_dssp HHHHHHH-C---------SS------------CEEEEEESCCHHHHHHHH-HTTCS------------------------
T ss_pred HHHHHHc-C---------CC------------CEEEECCCCcHHHHHHHH-HcCCc------------------------
Confidence 9865432 1 12 579999999999754322 11100
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++..... .+. .+ +++ . .++.+|+++.. ++..|
T Consensus 142 ---~~~~~~~~~~~-----------------~~~--~~---------------l~~----~--~~~~~v~l~~p-~nptG 177 (400)
T 3asa_A 142 ---EIIALPCLQEN-----------------AFF--PE---------------FPE----D--THIDILCLCSP-NNPTG 177 (400)
T ss_dssp ---EEEEEECCGGG-----------------TTC--CC---------------CCT----T--CCCSEEEEESS-CTTTC
T ss_pred ---ceEecccchhc-----------------Ccc--cC---------------hhh----c--cCccEEEEeCC-CCCCC
Confidence 00011111000 000 00 111 0 23456666554 88888
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCc----EEEeccccC-CCCCCceeeeccHHH-
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAV- 707 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PD----ivt~sKgLg-gG~~Pigav~~~~~i- 707 (863)
.+ +|.+.+++|.++|++||+++|+||++++|+..|. ......++..+| +.++||.++ .| +++|++++++++
T Consensus 178 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~ 255 (400)
T 3asa_A 178 TV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG-IRLGWTVIPQELT 255 (400)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT-CCCEEEECCTTCB
T ss_pred Cc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc-hheeEEeeChhhc
Confidence 65 5789999999999999999999999998977664 222323322244 558899998 88 899999999887
Q ss_pred ------HHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 708 ------FDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 708 ------~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
++.+... .+..++ +.++++++++.++|+.. +.+++.+..+..++.+.+.+. +.+ +.-+
T Consensus 256 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~l~~~L~----~~g-~~~~ 320 (400)
T 3asa_A 256 YADGHFVIQDWER------FLSTTFNGASIPAQEAGVAGLSIL----PQLEAIHYYRENSDLLRKALL----ATG-FEVF 320 (400)
T ss_dssp CTTSCBHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHH----HTT-CEEE
T ss_pred cchhhhHHHHHHH------HhccCccCCChHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHH----HCC-Ceee
Confidence 4544320 123445 57899999999888754 223334444444444433332 222 2223
Q ss_pred cc-cceEEEEE-EccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 781 VA-LGTLCAIE-LQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 781 rg-~Gl~~~ie-l~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+ .|.++.++ +.... ....+...|++ +||++.|+ .+.+|++ +..+++++++++++|.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 321 GGEHAPYLWVKPTQANI--------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAP 390 (400)
T ss_dssp ECSSSSEEEEECCCTTC--------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC--
T ss_pred CCCCceEEEEeccCCCC--------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHH
Confidence 33 46788887 54221 02246666765 59999874 3679987 5789999999999999888
Q ss_pred HHH
Q 002941 851 EEF 853 (863)
Q Consensus 851 ~~l 853 (863)
++.
T Consensus 391 ~~~ 393 (400)
T 3asa_A 391 ALQ 393 (400)
T ss_dssp ---
T ss_pred Hhh
Confidence 654
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-18 Score=188.32 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=188.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|.++|+++++. +..++++||++|++.+++.+.+ .| .+|++...+||+
T Consensus 48 ~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~~---------~g------------~~vl~~~~~~~~ 103 (386)
T 1cs1_A 48 RRGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFLK---------PG------------DLLVAPHDCYGG 103 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEETTCCHH
T ss_pred CCCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEecCCcHh
Confidence 35677888999999999984 3556668899999999987621 11 579999999988
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
........... . + . .+..++. .|
T Consensus 104 ~~~~~~~~~~~---~-----------g----~-------~~~~~~~--------------------------~d------ 126 (386)
T 1cs1_A 104 SYRLFDSLAKR---G-----------C----Y-------RVLFVDQ--------------------------GD------ 126 (386)
T ss_dssp HHHHHHHHHTT---T-----------S----C-------EEEEECT--------------------------TC------
T ss_pred HHHHHHHHHHh---c-----------C----C-------EEEEeCC--------------------------CC------
Confidence 43211000000 0 0 0 0001110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.++ +++++|+++++ ++.+|.+.+ +++|.++|++||+++|+||+|+++... ... .+
T Consensus 127 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~~~---~~ 187 (386)
T 1cs1_A 127 --EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-NPL---AL 187 (386)
T ss_dssp --HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-CGG---GG
T ss_pred --HHHHHHhhc--------cCCcEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc---cc
Confidence 245666664 24678999997 999998875 899999999999999999999877433 221 23
Q ss_pred CCCCcEE--EeccccCCCCCCc-eeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pi-gav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
.+|++ +++|+++++..++ |++++++ ++++.+.. +.++++++.+|+++++++++++.+. +..+++.+
T Consensus 188 --~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 257 (386)
T 1cs1_A 188 --GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQR 257 (386)
T ss_dssp --TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH------HHHHHTCBCCHHHHHHHHHHHTTHH--HHHHHHHH
T ss_pred --CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH------HHHhcCCCCCHHHHHHHHhcccHHH--HHHHHHHH
Confidence 35666 6899998764566 8888876 78887753 2344567789999998888887542 22344444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeE------------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
+.+.+.+. +.+++.+.. .++.|.++.+++... ...+.+.|.++|
T Consensus 258 ~~~~l~~~--------l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~g 319 (386)
T 1cs1_A 258 NAQAIVKY--------LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRFLGGLS 319 (386)
T ss_dssp HHHHHHHH--------HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHHHHTCS
T ss_pred HHHHHHHH--------HhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHHHHhCC
Confidence 44444433 333333322 256699999988532 345677788899
Q ss_pred cEEEe--c-----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 817 VYMRP--L-----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 817 V~~~p--~-----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
|+++. . .+.+|+++++..++++++.+.++|+++
T Consensus 320 i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 320 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 99873 1 278999999877777777777766543
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=192.79 Aligned_cols=340 Identities=11% Similarity=0.055 Sum_probs=204.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc-CCCCC-ChHHHHHHHHHHhhc----CCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~----p~~~~~~v~f~~SGSeA 473 (863)
.++|+.+|... + ..+|.|.+|+.++++++.... ..++. .....+|.++|++++ +.. .+.++|++++++|
T Consensus 57 ~~i~l~~~~~~--~--~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~~t~G~~~a 131 (432)
T 3ei9_A 57 QVISLGIGDTT--E--PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVFVSDGAKCD 131 (432)
T ss_dssp CCEECSSCCCC--S--CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CeEEccCCCCC--C--CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEEECCChHHH
Confidence 67887775222 2 268999999999998765321 11222 233466777777764 322 3689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+..++ + .| ..||+...+||+....+...+....+.. .+..
T Consensus 132 l~~l~~l~-~---------~g------------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~---------------~~~~ 174 (432)
T 3ei9_A 132 ISRLQVMF-G---------SN------------VTIAVQDPSYPAYVDSSVIMGQTGQFNT---------------DVQK 174 (432)
T ss_dssp HHHHHHHH-C---------TT------------CCEEEEESCCTHHHHHHHHHTCSCCEET---------------TTTE
T ss_pred HHHHHHHc-C---------CC------------CEEEEeCCCCHHHHHHHHHcCCcccccc---------------cccc
Confidence 98632222 1 12 5799999999997655443332111100 0000
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+ ..+..++.... .+ . ...+++ .++..+.+++.| ++..
T Consensus 175 ~--~~~~~~~~~~~-----------------------~~---~--------~~~l~~-----~~~~~~v~l~~p--~NPt 211 (432)
T 3ei9_A 175 Y--GNIEYMRCTPE-----------------------NG---F--------FPDLST-----VGRTDIIFFCSP--NNPT 211 (432)
T ss_dssp E--TTCEEEECCGG-----------------------GT---T--------SCCGGG-----CCCCSEEEEESS--CTTT
T ss_pred c--CceEEeccCcc-----------------------cC---C--------cCChhh-----CCCCCEEEEeCC--CCCC
Confidence 0 00111111100 00 0 000111 122234444555 7888
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC----CCCcEEEeccccC-CCCCCceeeeccHHH-
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG----CVPDIACYGKLLT-GGVIPLAATLATNAV- 707 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g----v~PDivt~sKgLg-gG~~Pigav~~~~~i- 707 (863)
|.+ ++.+.+++|.++|++||++||+||+|++|...+.......+. ....+.++||.++ .| +++|++++++++
T Consensus 212 G~~-~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~ 289 (432)
T 3ei9_A 212 GAA-ATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLL 289 (432)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCB
T ss_pred CCC-CCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc-cceEEEEEChHHh
Confidence 864 477889999999999999999999999886555433333222 2223458899998 78 899999999887
Q ss_pred -------HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 708 -------FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 708 -------~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
.+.+.. .....+++.++++++++.++++.. ..++.+++.+..+..++.+.+.+ .+.+ +..+
T Consensus 290 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L----~~~g-~~~~ 357 (432)
T 3ei9_A 290 YSDGFPVAKDFNR------IICTCFNGASNISQAGALACLTPE-GLEAMHKVIGFYKENTNIIIDTF----TSLG-YDVY 357 (432)
T ss_dssp CTTSCBHHHHHHH------HHHHSCCCSCHHHHHHHHHHSSHH-HHHHHHHHHHHHHHHHHHHHHHH----HHTT-CCEE
T ss_pred hcchHHHHHHHHH------HhccccCCCCHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH----HHCC-ceec
Confidence 555542 112345568899999998887531 11233444444444444443333 3332 2223
Q ss_pred c-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 781 V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 781 r-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
. ..|.++.+.+.... ..+++..|++ +||++.|. .+.+|++ +..++++|++++++|++.
T Consensus 358 ~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 358 GGKNAPYVWVHFPNQS---------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQL 424 (432)
T ss_dssp ECSSSSEEEEECTTSC---------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEECCCCC---------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 3 35677778776322 4567777775 59999873 3789987 467999999999888764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-18 Score=187.12 Aligned_cols=335 Identities=13% Similarity=0.032 Sum_probs=210.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhc-ccccCCC----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~-~~~~~~~----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+ .|+ .+|+|.+|+.+++++. +...... ...+...+|.++|+++++.+ .+.++|++||++|+
T Consensus 3 ~yld~~~------~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 74 (384)
T 1eg5_A 3 VYFDNNA------TTR-VDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESI 74 (384)
T ss_dssp EECBTTT------CCC-CCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHH
T ss_pred EEEecCc------cCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHH
Confidence 5777554 245 6899999999999862 1111000 01244578999999998743 35899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce--ecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME--AQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals--~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
+.+++.+. .++.. .| .+||+...+||+....... ..|..
T Consensus 75 ~~~~~~~~-~~~~~----~g------------d~vl~~~~~~~~~~~~~~~~~~~g~~---------------------- 115 (384)
T 1eg5_A 75 NWILKTVA-ETFEK----RK------------RTIITTPIEHKAVLETMKYLSMKGFK---------------------- 115 (384)
T ss_dssp HHHHHHHH-HHTTT----TC------------CEEEECTTSCHHHHHHHHHHHHTTCE----------------------
T ss_pred HHHHHhhh-hhccC----CC------------CEEEECCCCchHHHHHHHHHHhcCCE----------------------
Confidence 99999883 21100 12 5799999999886443321 11100
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..++....+ ..| .+.+++.+. .++.+|++++. ++.
T Consensus 116 ------~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~np 151 (384)
T 1eg5_A 116 ------VKYVPVDSRG---------------------VVK--------LEELEKLVD--------EDTFLVSIMAA-NNE 151 (384)
T ss_dssp ------EEECCBCTTS---------------------CBC--------HHHHHHHCC--------TTEEEEEEESB-CTT
T ss_pred ------EEEEccCCCC---------------------ccC--------HHHHHHHhC--------CCCeEEEEECC-CCC
Confidence 0001110000 011 234555552 25778888886 899
Q ss_pred CCceeCCHHHHHHHHHHHHHcC--CeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHH-
Q 002941 633 GGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV- 707 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i- 707 (863)
.|.+.+ +++|.++|++|| +++|+||+++ ||... +.... ..+|++++| |.++- ..+|++++++++
T Consensus 152 tG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~sK~~g~--~G~G~~~~~~~~~ 220 (384)
T 1eg5_A 152 VGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLEK--LEVDYASFSAHKFHGP--KGVGITYIRKGVP 220 (384)
T ss_dssp TCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCTT--TCCSEEEEEGGGGTSC--TTCEEEEECTTSC
T ss_pred cccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCchh--cCCCEEEecHHHhcCC--CceEEEEEcCCCc
Confidence 998877 799999999999 9999999995 76432 22222 257999877 97542 126899998875
Q ss_pred -HHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---cc-
Q 002941 708 -FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---VA- 782 (863)
Q Consensus 708 -~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---rg- 782 (863)
...+..... .....+++.++++++++.++|+.+++ ..+++.+..+..++.+.+.+ .+ +.+.-+ .+
T Consensus 221 ~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L----~~-~g~~~~~~~~~~ 290 (384)
T 1eg5_A 221 IRPLIHGGGQ---ERGLRSGTQNVPGIVGAARAMEIAVE--ELSEAAKHMEKLRSKLVSGL----MN-LGAHIITPLEIS 290 (384)
T ss_dssp CCCSBCSSCT---TTTTBCSCCCHHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHH----HT-TTCEECSCTTSB
T ss_pred cccccccCcc---cccccCCCCChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHh----CC-CCeEEeCCcccC
Confidence 222211000 00124567899999999999987532 23444444445555443333 22 222111 11
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHH
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEV 838 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~ee 838 (863)
.+.++.+.+...+ ...+.+.|.++||++.+. .+.+|+.+...+++++
T Consensus 291 ~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 361 (384)
T 1eg5_A 291 LPNTLSVSFPNIR---------GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEE 361 (384)
T ss_dssp CTTEEEEECTTCC---------HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHH
T ss_pred CCCEEEEEeCCCC---------HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHH
Confidence 3566777665321 456888899999999872 2579998877789999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 839 id~~v~~L~~~l~~l~~ 855 (863)
+++++++|+++++++.+
T Consensus 362 i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 362 VDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=193.43 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=142.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh---hhcCCCCcEEEeccccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~---e~~gv~PDivt~sKgLggG~ 695 (863)
++.+|++... ++..|.+. +.+.+++|.++|++||+++|+||+|..+ ..+..+.. ...+....+.++||.+..|
T Consensus 180 ~~~~v~~~~p-~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G- 255 (417)
T 3g7q_A 180 ETGMICVSRP-TNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPG- 255 (417)
T ss_dssp TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTT-
T ss_pred CceEEEECCC-CCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCC-
Confidence 4555665543 78888655 6677999999999999999999999532 22211110 0112222256899976677
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh----HHHHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN----IIPERRILRELWDLELIQQI 771 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~----l~~~~~~l~~~l~~~l~~~~ 771 (863)
+++|++++++++++.+.. ..+..+++.++++++++.+.|+.. ++.++ +.+..+..++.+.+.+.+.+
T Consensus 256 ~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (417)
T 3g7q_A 256 SRCGIIIANDKTITAIAN------MNGIISLAPGGMGPAMMCEMIKRN---DLLRLSETVIKPFYYQRVQQTIAIIRRYL 326 (417)
T ss_dssp SCCEEEECCHHHHHHHHH------HHHHHCCCCCSHHHHHHHHHHHTT---CHHHHHHHTHHHHHHHHHHHHHHHHHHHC
T ss_pred cceEEEEeCHHHHHHHHH------hhcceeeCCCcHHHHHHHHHHcCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998864 235567888999999998888742 22222 22222333333333333333
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------CCEEEEecCCCCcHH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------GNVIYLMCGPCSSPE 837 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------g~~lr~~ppl~~t~e 837 (863)
...+........|+++.+++.... .....+...|.++||++.|+ .+.+|+.++. +++
T Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~ 397 (417)
T 3g7q_A 327 SEERCLIHKPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPD 397 (417)
T ss_dssp CTTTCEEECCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHH
T ss_pred ccCCceeeCCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHH
Confidence 222222223456788888886421 01567888899999999873 2489998764 999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
+|++++++|.++++++.
T Consensus 398 ~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 398 KIEAGVKILAEEIERAW 414 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=192.45 Aligned_cols=333 Identities=10% Similarity=0.006 Sum_probs=199.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC-CC----hHHHHHHHHHHhhcCCCCC--CeE--EEeCChhhHHHHHHHHHHHHHH-
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN-VY----EPALECAELLLQGVGKGWA--SRA--YFSDNGSTAIEIALKMAFRKFS- 486 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~-~~----~~~~eLae~L~~~~p~~~~--~~v--~f~~SGSeAvE~ALklA~r~~~- 486 (863)
+++.+.+++.+++.+........+ .. ....+++++|+++++.+ . +.+ +|+++|++|++.|++.++ .+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~-~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~ 185 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVTSGGTESLLLAMKTYR-DWAR 185 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGG-GGTSCCEEEEESSHHHHHHHHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCC-CccCCcceEEcCcHHHHHHHHHHHHH-HHhh
Confidence 568888888888876543321111 22 23345667778877632 1 366 999999999999999994 332
Q ss_pred hhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 487 ~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
..+|. + +.+||+...+|++....+ ...|. .+..++...
T Consensus 186 ~~~g~--~-----------~d~Vi~~~~~~~~~~~~~-~~~G~----------------------------~v~~v~~~~ 223 (514)
T 3mad_A 186 ATKGI--T-----------APEAVVPVSAHAAFDKAA-QYFGI----------------------------KLVRTPLDA 223 (514)
T ss_dssp HHHCC--S-----------SCEEEEETTSCTHHHHHH-HHHTC----------------------------EEEEECBCT
T ss_pred hhcCC--C-----------CCeEEEeCccchHHHHHH-HHcCC----------------------------eeEEeeeCC
Confidence 11221 1 257888888887743222 22110 011122111
Q ss_pred hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHH
Q 002941 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (863)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~L 646 (863)
.+ .-| .+.+++.+. +++++|++++. ++..|.+.+ +++|
T Consensus 224 ~~---------------------~~d--------~~~Le~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i 261 (514)
T 3mad_A 224 DY---------------------RAD--------VAAMREAIT--------PNTVVVAGSAP-GYPHGVVDP----IPEI 261 (514)
T ss_dssp TS---------------------CBC--------HHHHHHHCC--------TTEEEEEEETT-CTTTCCCCC----HHHH
T ss_pred CC---------------------CCC--------HHHHHHHhc--------cCCEEEEEeCC-CCCCccccC----HHHH
Confidence 00 011 245666553 25778888887 898998876 8999
Q ss_pred HHHHHHcCCeEEEecccccc-----cccCC---cchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCC-
Q 002941 647 VKECQNRKIPVIFDEVFTGF-----WRLGV---ETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDS- 715 (863)
Q Consensus 647 relc~~~gilLI~DEV~TGf-----GRtG~---~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~- 715 (863)
.++|++||++||+||+|+|| +++|. .+.....|+ |++++ +|.+.+| .++|+++++++.........
T Consensus 262 ~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~ 338 (514)
T 3mad_A 262 AALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV--TSVSADTHKYGYGA-KGTSVILYRRPDLLHYQYFIA 338 (514)
T ss_dssp HHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTC--CEEEECTTTTTCCC-SSCEEEEESSHHHHTTTCEEE
T ss_pred HHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCC--cEEEECchhccCCC-CCeEEEEEeCHHHhccccccc
Confidence 99999999999999999876 45565 455555565 66655 5998887 79999998877655422100
Q ss_pred -cc------ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEE
Q 002941 716 -KL------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (863)
Q Consensus 716 -~~------~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~ 788 (863)
.+ ....++.++..+.+++.+++ +.+.+.+ .+++.++...+.+++.+. +.+.+.+.-+.....++.
T Consensus 339 ~~~~~~~~~~~~~~gs~~~~~~~a~~aal---~~l~~~~-~~~~~~~~~~~~~~l~~~----L~~~~g~~~~~~~~~~~~ 410 (514)
T 3mad_A 339 ADWPGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEG-YLDATRRILQAADRLKAG----VRAIPSLKILGDPLWVIA 410 (514)
T ss_dssp SSCTTCSEEESSSCSSCCHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHH----HHTSTTCEESSCCSSEEE
T ss_pred cccCCCcccCCccCCCCchHHHHHHHHHH---HHHhHHH-HHHHHHHHHHHHHHHHHH----HhhCCCeEEeCCCeEEEE
Confidence 00 00112222333344444444 4443322 233333333444433323 334444332222233666
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--CCEEEEecC-CCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--GNVIYLMCG-PCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--g~~lr~~pp-l~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+...... ..++.+.|.++||++... ++.+|+.+. +.++++++++++++|+++++++.+
T Consensus 411 ~~~~~~~---------~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 411 VASDELN---------IYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp EECSSSC---------HHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCC---------HHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6543221 567899999999988543 478999876 345679999999999999987653
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-18 Score=188.75 Aligned_cols=315 Identities=10% Similarity=-0.005 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.+.+.+++..+...........+.++...+|+++|+++.+. +.+++++||++|++.+++.+++ .|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~~---------~g--- 103 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLCQ---------QG--- 103 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT---
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC---
Confidence 35566665532222222222334678899999999999873 5788889999999999987621 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+||+...+||+.......+... . |...+.+|.
T Consensus 104 ---------d~vi~~~~~~~~~~~~~~~~~~~---~------------------------g~~~~~v~~----------- 136 (398)
T 2rfv_A 104 ---------DHIVSASAIYGCTHAFLSHSMPK---F------------------------GINVRFVDA----------- 136 (398)
T ss_dssp ---------CEEEEESSSCHHHHHHHHTHHHH---T------------------------TCEEEEECT-----------
T ss_pred ---------CEEEEcCCCcccHHHHHHHHHHH---c------------------------CCEEEEeCC-----------
Confidence 57999999988864332111000 0 000011110
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.| .+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||+++
T Consensus 137 -------------~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~l 182 (398)
T 2rfv_A 137 -------------AK--------PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALL 182 (398)
T ss_dssp -------------TS--------HHHHHHHCC--------TTEEEEEEESS-BTTTTBCCC----HHHHHHHHHHTTCEE
T ss_pred -------------CC--------HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEE
Confidence 01 234555552 35789999997 899998875 999999999999999
Q ss_pred EEecccccccccCCcchhhhcCCCCcE--EEeccccCCCCCCc-eeeeccHHHHH-hhhcCCccceeeccc-CCCccHHH
Q 002941 658 IFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPL-AATLATNAVFD-SFVGDSKLKALLHGH-SYSAHALG 732 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDi--vt~sKgLggG~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~~-T~~~~pla 732 (863)
|+||+++ .|..+... .++ +|+ .+++|.+++...|+ |++++++++++ .+.. +.+.. +++.+|++
T Consensus 183 i~De~~~-~~~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 250 (398)
T 2rfv_A 183 VVDNTFM-SPYCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV------GLKDITGGCMSPFN 250 (398)
T ss_dssp EEECTTT-CTTTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------HHHHTTCCCCCHHH
T ss_pred EEECCCc-ccccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH------HHHhCCCCCCCHHH
Confidence 9999996 33333322 234 566 47799997644788 99999998887 4542 22334 56789999
Q ss_pred HHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHH------HHHHhcCCCeeE----ecccceEEEEEEccCCcCCCCch
Q 002941 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL------IQQISSHRTVQR----VVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 733 ~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l------~~~~~~~p~v~~----vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
++++.++|+.+. .+.++..++.+.+.+.+.+.. ...+.++|.+.- .++.|.++.+++....
T Consensus 251 ~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~------- 321 (398)
T 2rfv_A 251 AWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL------- 321 (398)
T ss_dssp HHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-------
T ss_pred HHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH-------
Confidence 999999997542 234455555555554332110 000111222111 1357889999886321
Q ss_pred HHHHHHHHHHHHCCcEEEec----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.....+...+...|+.+.++ .+.+|++++...++++|+.++++|+++
T Consensus 322 ~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 322 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 12344444554455554321 379999999989999999988888653
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=182.94 Aligned_cols=328 Identities=11% Similarity=0.022 Sum_probs=197.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~AL 478 (863)
.++||.++ +.++ .+|+|.+|+.+++.. +. ..+ ..+...+++++|+++++. -..++|++||++|++.|+
T Consensus 8 ~~id~~~~----~~~~-~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~l~~~la~~~g~--~~~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 8 PALGFSSD----NIAG-ASPEVAQALVKHSSG--QA--GPYGTDELTAQVKRKFCEIFER--DVEVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCBCSCG----GGCC-CCHHHHHHHHHTTSS--CC--CSTTCSHHHHHHHHHHHHHHTS--CCEEEEESCHHHHHHHHH
T ss_pred ceEeeccC----CccC-CCHHHHHHHHhhccC--cc--cccccchHHHHHHHHHHHHhCC--CCcEEEeCCccHHHHHHH
Confidence 68898874 2345 689999999988632 21 122 356778999999999883 235899999999999999
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccc--ceec--CCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ga--ls~t--~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++ +| ..||+ ...+|+.+..+ +... |..
T Consensus 77 ~~~~~---------~g------------d~vi~-~~~~~~~~~~~~~~~~~~~g~~------------------------ 110 (356)
T 1v72_A 77 SAMTP---------PW------------GNIYC-HPASHINNDECGAPEFFSNGAK------------------------ 110 (356)
T ss_dssp HTSCC---------TT------------EEEEE-CTTSHHHHSSTTHHHHHTTSCE------------------------
T ss_pred HHhcC---------CC------------CEEEE-cCccchhhhhchHHHHHhCCcE------------------------
Confidence 87621 11 34554 55667665543 3322 100
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHH-HHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~-~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
+..++.++ + .-| .+.+++ .+.+. ...++.++++|+++|. ++ +
T Consensus 111 ----~~~v~~~~-~---------------------~~d--------~~~l~~~~i~~~-~~~~~~~~~~v~~~~~-~~-t 153 (356)
T 1v72_A 111 ----LMTVDGPA-A---------------------KLD--------IVRLRERTREKV-GDVHTTQPACVSITQA-TE-V 153 (356)
T ss_dssp ----EEECCCGG-G---------------------CCC--------HHHHHHHTTSST-TCTTSCEEEEEEEESS-CT-T
T ss_pred ----EEEecCCC-C---------------------eEc--------HHHHHHHhhhcc-hhhccCCceEEEEEcC-CC-C
Confidence 00111110 0 011 234555 44310 0012236899999996 64 7
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccc--cCCcchhhhcC--CCCcEEE--eccccCCCCCCce--eeeccH
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLG--CVPDIAC--YGKLLTGGVIPLA--ATLATN 705 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR--tG~~~a~e~~g--v~PDivt--~sKgLggG~~Pig--av~~~~ 705 (863)
|. +++.+++++|.++|++||++||+||++..++. .|.. ...++ ...|+++ ++|+ | .|+| ++++++
T Consensus 154 G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g-~~~G~g~~~~~~ 226 (356)
T 1v72_A 154 GS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G-VLAAEAIVLFNT 226 (356)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T-CSSCEEEEESSG
T ss_pred Cc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C-CcCccEEEEECH
Confidence 75 56889999999999999999999999964321 1211 11122 2457765 5787 3 4888 666789
Q ss_pred HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccc
Q 002941 706 AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALG 784 (863)
Q Consensus 706 ~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~G 784 (863)
++++.+.... .+..+... .+..++.++++.++++.+ .++.++.+.+++.+ .+.+.+.+.+.-+ ...+
T Consensus 227 ~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l----~~~L~~~~g~~~~~~~~~ 294 (356)
T 1v72_A 227 SLATEMSYRR-----KRAGHLSS--KMRFLSAQIDAYLTDDLW-LRNARKANAAAQRL----AQGLEGLGGVEVLGGTEA 294 (356)
T ss_dssp GGHHHHHHHH-----HHTTCCCS--STHHHHHHHHHHTSTTHH-HHHHHHHHHHHHHH----HHHHTTCTTEEEESCCCS
T ss_pred HHHhhHHHHh-----hccCchhh--hHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHH----HHHHhhCCCcEEccCCCc
Confidence 9888764210 01112111 122334455666655322 22333334444433 3334444444332 2344
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.++.+.+. ..+.+.|.++||++.+. ++.+|+.+++.++++++++++++|++++++.
T Consensus 295 ~~~~~~~~-------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 295 NILFCRLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp SEEEEEEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred cEEEEEcC-------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 55555552 15788889999999853 4789999889999999999999999887654
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=188.24 Aligned_cols=348 Identities=13% Similarity=-0.006 Sum_probs=206.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|+|+.++.++..+ .+++.+|+. . +... -...+...+|.++|+++++ .++++|++||++|++.|++
T Consensus 43 ~ylD~~~~~~~~~~----~~~~~~a~~----~-~~~~--y~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 43 IYIDLLTDSGTNAM----SDKQWAGMM----M-GDEA--YAGSENFYHLERTVQELFG---FKHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp CSEECSCSSSCCCC----CHHHHHHHT----T-CCCC--SSSCHHHHHHHHHHHHHHC---CSEEEEESSHHHHHHHHHH
T ss_pred ceeeeccccCCccC----CHHHHHHhh----c-chhh--cccChhHHHHHHHHHHHhC---CCcEEEeCCcHHHHHHHHH
Confidence 79999876655443 366666654 1 1111 1135668899999999997 3689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.++ ++ .+ |+...+||+.+..++...|....
T Consensus 109 ~l~-----------~~-----------gd-i~~~~~~~~~~~~~~~~~G~~~~--------------------------- 138 (456)
T 2ez2_A 109 LAI-----------KP-----------GQ-YVAGNMYFTTTRYHQEKNGAVFV--------------------------- 138 (456)
T ss_dssp HHC-----------CT-----------TC-EEEESSCCHHHHHHHHHTTCEEE---------------------------
T ss_pred HhC-----------CC-----------CC-EeccccccchhHHHHHHcCCEEE---------------------------
Confidence 762 11 23 77888998986665554331100
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMV 638 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~p 638 (863)
.++...... +....+| +..-| .+.+++.+.+ .....+++|+++ |. ++.+|. +.
T Consensus 139 -~v~~~~~~~----~~~~~~~-------~~~~d--------~~~l~~~i~~----~t~~~~~~v~l~~p~-n~ptG~-~~ 192 (456)
T 2ez2_A 139 -DIVRDEAHD----AGLNIAF-------KGDID--------LKKLQKLIDE----KGAENIAYICLAVTV-NLAGGQ-PV 192 (456)
T ss_dssp -ECBCGGGGC----TTCCCSC-------TTCBC--------HHHHHHHHHH----HCGGGEEEEEEESSB-TTTTSB-CC
T ss_pred -Eeccccccc----ccccccc-------cCCCC--------HHHHHHHHHh----ccccceeEEEEeccC-CCCCCc-cC
Confidence 000000000 0000000 00012 2456666643 112457888888 54 557884 67
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeccccc----------ccccCCcch--hhhcCCCCcEEEec-cccCCCCCC-ceeeec-
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVETT--ADLLGCVPDIACYG-KLLTGGVIP-LAATLA- 703 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TG----------fGRtG~~~a--~e~~gv~PDivt~s-KgLggG~~P-igav~~- 703 (863)
+.+++++|.++|++||++||+||+|+. +++.|..+. .+..+..+|++++| |.+++ .| .|++++
T Consensus 193 ~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~--~~~gG~~~~~ 270 (456)
T 2ez2_A 193 SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL--VNIGGFLCMN 270 (456)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC--CSSCEEEEES
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC--CCceeEEEEC
Confidence 899999999999999999999999974 345565331 11334558999884 66644 34 567777
Q ss_pred cHHHHHhhhcCCccceeec-ccCCCc-cHHHHHH-HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 704 TNAVFDSFVGDSKLKALLH-GHSYSA-HALGCAA-AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 704 ~~~i~~~l~~~~~~~~~~~-~~T~~~-~pla~AA-alAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
++++++.+..-. ...+ ..++.+ ++..+++ +.+.++.++ +++.++..++.+++.+.| .+ . ..+.+.
T Consensus 271 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L----~~-~-g~~~~~-- 338 (456)
T 2ez2_A 271 DDEMFSSAKELV---VVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKL----KA-A-GVPIVE-- 338 (456)
T ss_dssp CHHHHHHHHHHH---HHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHH----HH-T-TCCBCS--
T ss_pred CHHHHHHHHHHH---hhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH----hc-C-CCcccc--
Confidence 688887664210 0011 122332 4444444 666666553 344555555554444433 22 1 233222
Q ss_pred cccceEEEEEEcc--CCcCCCCchHH-HHHHHHHH-HHCCcEEEec------------------CCEEEEecCCC-CcHH
Q 002941 781 VALGTLCAIELQA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPL------------------GNVIYLMCGPC-SSPE 837 (863)
Q Consensus 781 rg~Gl~~~iel~~--~~~~~~~~~~~-~~~l~~~l-~e~GV~~~p~------------------g~~lr~~ppl~-~t~e 837 (863)
...|.++.+.+.. +... .... ...++..| .++||.+.+. .+.+|++++.. ++++
T Consensus 339 p~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e 415 (456)
T 2ez2_A 339 PVGGHAVFLDARRFCEHLT---QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYA 415 (456)
T ss_dssp SCCSSEEEEEHHHHTTTSC---GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHH
T ss_pred CCCceEEEEEhHHhcCCCC---hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHH
Confidence 2236677777642 1100 1112 44557777 5889986431 26899998887 8999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 838 eid~~v~~L~~~l~~l~ 854 (863)
++++++++|++++++..
T Consensus 416 ~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 416 HMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999987654
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-18 Score=190.67 Aligned_cols=333 Identities=11% Similarity=0.043 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHHHh--cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAAR--FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~--~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
-.+.|.+|+.+.... ..+.. ..+..+...++++.+....+....+.++++++|++|++.+++.... .|
T Consensus 57 ~~~~v~~a~~~~~~~~~~~y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~---------~g 126 (418)
T 3rq1_A 57 FLKTVKEEYLSLSDSEHVGYAP-IAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTE---------PG 126 (418)
T ss_dssp CCHHHHHHHHTCCHHHHHSCCC-TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSC---------TT
T ss_pred ccHHHHHHHHHhcccccCCCCC-CCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcC---------CC
Confidence 457777777654332 12211 1123344555666665544321112899999999999999986521 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~ 573 (863)
.+|++...+|++....+...+.. +..++.. ..+
T Consensus 127 ------------d~Vl~~~p~~~~~~~~~~~~g~~-----------------------------~~~v~~~~~~~----- 160 (418)
T 3rq1_A 127 ------------DEVLTADWYWGAYRVICSDTGRT-----------------------------LVTYSLFDEHN----- 160 (418)
T ss_dssp ------------CEEEEESSCCTHHHHHHHHTTCE-----------------------------EEEECSBCTTS-----
T ss_pred ------------CEEEECCCCchhHHHHHHHcCCE-----------------------------EEEEeeeCCCC-----
Confidence 57999999998875443322110 0011110 000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHH-
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQ- 651 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~- 651 (863)
.-| .+.+++.+.+. ..++..+++++ .|. ++..|.+. +.+.+++|.++|+
T Consensus 161 ----------------~~d--------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG~~~-~~~~l~~l~~~~~~ 211 (418)
T 3rq1_A 161 ----------------NFN--------HEAFQNRVNEL---AAKQTNVVVIFNTPG-NNPTGYSI-EDKDWDSILNFLKD 211 (418)
T ss_dssp ----------------SBC--------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHH
T ss_pred ----------------CcC--------HHHHHHHHHHh---hccCCCEEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHH
Confidence 011 23445555320 00123445555 474 78888655 6677999999999
Q ss_pred -----HcCCeEEEecccccccccCC---cchhhhcCCCCcE---E--EeccccC-CCCCCceeeec---cHHHHHhhhcC
Q 002941 652 -----NRKIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI---A--CYGKLLT-GGVIPLAATLA---TNAVFDSFVGD 714 (863)
Q Consensus 652 -----~~gilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi---v--t~sKgLg-gG~~Pigav~~---~~~i~~~l~~~ 714 (863)
+||+++|+||++++|++.|. .+.....++.+|+ + +|||.++ .| +++|++++ ++++++.+...
T Consensus 212 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~ 290 (418)
T 3rq1_A 212 LVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVGAMIGISDDEEIADEFFEV 290 (418)
T ss_dssp HHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCEEEEEEESSHHHHHHHHHH
T ss_pred hhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-CcceEEEEEeCCHHHHHHHHHH
Confidence 89999999999999987764 2334444566773 2 6899997 67 89999999 99999887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHH---hHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEE
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNH---NIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~---~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~i 789 (863)
.. ....+.++..++++++++.++|+..+. +.+.+ ++++..+..++.+.+.+.+. ..+. +... |.++.+
T Consensus 291 ~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~ 363 (418)
T 3rq1_A 291 NK--STSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV--GLPM---LPYRGGFFITI 363 (418)
T ss_dssp HH--HHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCC---CCCCSSSEEEE
T ss_pred HH--HHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC---CCCCceEEEEc
Confidence 10 001112235778888887777652110 11222 22233333334333333322 2222 2333 444445
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+. . ..++++.|.++||++.|.++.+|++.. .++++++++++++|.++++++.
T Consensus 364 ~~~--~---------~~~~~~~l~~~gi~v~~g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 364 PTD--S---------ANAICEELKKEHIYVIALANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp ECT--T---------HHHHHHHHHHTTEECEECSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred CCC--C---------HHHHHHHHHhCCEEEecCCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence 442 1 456788899999999998899999733 4699999999999999887653
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=185.41 Aligned_cols=337 Identities=12% Similarity=0.052 Sum_probs=212.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|+|..+ .++ .+|.+.+|+.+++.. +.. ....+...++.++|+++++.+ .+.++|++||++|++.+++
T Consensus 10 ~yl~~~~------~~~-~~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 10 VITLTAG------PVN-AYPEVLRGLGRTVLY--DYD--PAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp SEECSSS------CCC-CCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHHHHHHH
T ss_pred ceeecCC------CcC-CCHHHHHHHhccccc--ccc--HHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHHHHHHH
Confidence 5777442 234 679999998876643 110 012244678899999988753 3689999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
.+++ .| .+|++...+||+.....+. ..|..
T Consensus 78 ~~~~---------~g------------d~Vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 108 (392)
T 2z9v_A 78 SLIS---------PD------------DVVLNLASGVYGKGFGYWAKRYSPH---------------------------- 108 (392)
T ss_dssp HHCC---------TT------------CCEEEEESSHHHHHHHHHHHHHCSC----------------------------
T ss_pred HhcC---------CC------------CEEEEecCCcccHHHHHHHHHcCCc----------------------------
Confidence 7621 12 5699999999986311111 01100
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
+..++.+... ..| .+.+++.+++ ..++.+|++++. ++..|.+.+
T Consensus 109 ~~~v~~~~~~---------------------~~d--------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 152 (392)
T 2z9v_A 109 LLEIEVPYNE---------------------AID--------PQAVADMLKA------HPEITVVSVCHH-DTPSGTINP 152 (392)
T ss_dssp EEEEECCTTS---------------------CCC--------HHHHHHHHHH------CTTCCEEEEESE-EGGGTEECC
T ss_pred eEEeeCCCCC---------------------CCC--------HHHHHHHHhc------CCCCcEEEEecc-CCCCceecc
Confidence 0111111000 011 2456666642 124567888887 899998876
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCC-
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDS- 715 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~- 715 (863)
+++|.++|++||+++|+||+++ +|... +..+.+ .+|++++ +|+++|+ .++|++++++++++.+....
T Consensus 153 ----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~ 222 (392)
T 2z9v_A 153 ----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAP-PGLTMMGVSERAWAKMKANPL 222 (392)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCC-SCCEEEEECHHHHHHHHTCTT
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCC-CceeEEEECHHHHHHhhhccC
Confidence 8999999999999999999995 54332 223333 4788876 6998876 56799999999988775310
Q ss_pred ----cc-------cee--ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee-E-e
Q 002941 716 ----KL-------KAL--LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-R-V 780 (863)
Q Consensus 716 ----~~-------~~~--~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~-~-v 780 (863)
.. ..+ ....+.+.++.+++++.++|+.+++.+ .+++.+..+.+++.+.+.+.+. ....+. . .
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~ 299 (392)
T 2z9v_A 223 APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEG-PEAVWARHALTAKAMRAGVTAM--GLSVWAASDS 299 (392)
T ss_dssp SCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGG
T ss_pred CCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCCcc
Confidence 00 000 011233457888888888898775432 2334444444455444444332 222211 1 0
Q ss_pred cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCC-CCcHHHHHHHHHHHHHHHHHH
Q 002941 781 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 781 rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l 853 (863)
...+.++.+.+.... ....+.+.|.++ ||++.+. .+.+|+.+.. .++++++++++++|+++++++
T Consensus 300 ~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 300 IASPTTTAVRTPDGV--------DEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp GBCTTEEEEECCTTC--------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ccCCceEEEECCCCC--------CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 124677777774221 145788889987 9999874 4789998533 789999999999999998765
Q ss_pred H
Q 002941 854 D 854 (863)
Q Consensus 854 ~ 854 (863)
.
T Consensus 372 ~ 372 (392)
T 2z9v_A 372 G 372 (392)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=183.20 Aligned_cols=310 Identities=13% Similarity=0.046 Sum_probs=197.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcC---CCCCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p---~~~~~~v~f~~SGSeAvE~ 476 (863)
+++|+.++.. .++ .+|++.+|+.+++.+.... .+......+|.++|+++++ .. .+.++|+++|++|++.
T Consensus 20 ~~i~l~~~~~--~~~--~~~~v~~a~~~~~~~~~~~---~y~~~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 20 DKTYLALNEN--PFP--FPEDLVDEVFRRLNSDALR---IYYDSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CSEEESSCCC--SSC--CCHHHHHHHHHTCCGGGGG---SCCCSSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred cceECCCCCC--CCC--CCHHHHHHHHHHhhhhhhh---cCCCCchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 6788877653 355 4799999999987432211 1222235678888888776 22 4689999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.+ | .+|++. .+||+....+... |..
T Consensus 92 ~~~~~--------g----------------d~Vl~~-p~y~~~~~~~~~~-g~~-------------------------- 119 (335)
T 1uu1_A 92 MMLMF--------D----------------RSVFFP-PTYSCYRIFAKAV-GAK-------------------------- 119 (335)
T ss_dssp HHHHS--------S----------------EEEECS-SSCHHHHHHHHHH-TCE--------------------------
T ss_pred HHHHh--------C----------------CcEEEC-CCcHHHHHHHHHc-CCe--------------------------
Confidence 88754 2 468888 9999975433221 100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
.+.+|... .+. -| ++++ ++.-+.+++.| ++..|.+
T Consensus 120 ----~~~v~~~~-----------------~~~--~d---------------~~~l-----~~~~~v~l~~p--~nptG~~ 154 (335)
T 1uu1_A 120 ----FLEVPLTK-----------------DLR--IP---------------EVNV-----GEGDVVFIPNP--NNPTGHV 154 (335)
T ss_dssp ----EEECCCCT-----------------TSC--CC---------------CCCC-----CTTEEEEEESS--CTTTCCC
T ss_pred ----EEEeccCC-----------------CCC--CC---------------HHHc-----CCCCEEEEeCC--CCCCCCC
Confidence 00111000 000 01 0110 12233444788 6888866
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
. +.+.+++|.++| | ++|+||+|++|+. +.... .+.++....+.++||.+| .| +++|++++++++++.+...
T Consensus 155 ~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~ 227 (335)
T 1uu1_A 155 F-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYNRV 227 (335)
T ss_dssp C-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHH
T ss_pred C-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcc-cCeEEEEeCHHHHHHHHHh
Confidence 5 555555555554 8 9999999988753 22221 222333334558899998 78 8999999999999887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
..+|+.|+++++++.++|+. .++.++..+..+..++.+.+.+.+. ... -..+.|.++.+.+..
T Consensus 228 --------~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~~~~~~~~~- 290 (335)
T 1uu1_A 228 --------RLPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERMKSALREM--GYR---ITDSRGNFVFVFMEK- 290 (335)
T ss_dssp --------SCTTCSCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHH--TCC---BCCCCSSEEEEECCT-
T ss_pred --------cCCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHC--CcE---EcCCCCeEEEEECCC-
Confidence 23568899999999999874 3344555555555666555444332 221 234457777777643
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.....+.+.|.++||++++..+.+|+++ .+++++++++++|+++
T Consensus 291 --------~~~~~~~~~l~~~gi~v~~~~~~iRis~---~~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 291 --------EEKERLLEHLRTKNVAVRSFREGVRITI---GKREENDMILRELEVF 334 (335)
T ss_dssp --------HHHHHHHHHHHHHTEEEEEETTEEEEEC---CCHHHHHHHHHHHHCC
T ss_pred --------CCHHHHHHHHHHCCEEEEECCCeEEEEe---CCHHHHHHHHHHHHhh
Confidence 1256788889999999999778999985 3467899999888653
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=178.40 Aligned_cols=332 Identities=11% Similarity=0.003 Sum_probs=210.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+. +. .+|+|.+|+.+++++........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 28 ~~ld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAG------ML-IPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGC------CC-CCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEEeCCCc------CC-CCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCChHHHH
Confidence 67775542 13 579999999999987532110111 1355778999999988743 35899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee---cCCCCCCCCCcCCcccCCCcccCCC
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~---t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+.+++...+.. . . ..+||+...+|++.......+ .|.
T Consensus 100 ~~~~~~l~~~~----~--~------------gd~vi~~~~~~~~~~~~~~~~~~~~g~---------------------- 139 (406)
T 3cai_A 100 SLLAEASSSRA----G--L------------GYEVIVSRLDDEANIAPWLRAAHRYGA---------------------- 139 (406)
T ss_dssp HHHHHHTGGGG----B--T------------TCEEEEETTSCGGGTHHHHHHHHHHBC----------------------
T ss_pred HHHHHHHhhcc----C--C------------CCEEEEcCCccHHHHHHHHHHHHhcCC----------------------
Confidence 99887541100 0 1 157999988888754332221 110
Q ss_pred cccccCceeeecCc-chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 002941 552 TVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (863)
Q Consensus 552 ~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViq 630 (863)
.+..++.. ..+ .-| .+.+++.+. .++.+|+++++ +
T Consensus 140 ------~v~~v~~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~ 175 (406)
T 3cai_A 140 ------KVKWAEVDIETG---------------------ELP--------TWQWESLIS--------KSTRLVAVNSA-S 175 (406)
T ss_dssp ------EEEEECCCTTTC---------------------CCC--------GGGHHHHCC--------TTEEEEEEESB-C
T ss_pred ------eEEEEecCcccC---------------------CcC--------HHHHHHHhC--------CCceEEEEeCC-c
Confidence 00111111 000 001 123444442 35788899987 8
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCce-eeeccHHH
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLA-ATLATNAV 707 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pig-av~~~~~i 707 (863)
+..|.+.+ +++|.++|++||+++|+||+|+ +|... +....++ +|++++ +|.+| + .+| ++++++++
T Consensus 176 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g-~--~~G~~~~~~~~~ 243 (406)
T 3cai_A 176 GTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGG-P--PIGAMVFRDPSV 243 (406)
T ss_dssp TTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTS-C--SCEEEEESCHHH
T ss_pred CCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcC-C--CcCeEEEEehHH
Confidence 99998876 7899999999999999999995 43321 3334444 688754 79765 3 288 89999998
Q ss_pred HHhhhcCCccce--eec-ccCCCccHHHHHHHHHHHHHhcChh-------------hHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 708 FDSFVGDSKLKA--LLH-GHSYSAHALGCAAAAKSIKWFKDPQ-------------TNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 708 ~~~l~~~~~~~~--~~~-~~T~~~~pla~AAalAaL~~l~~~~-------------l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
++.+........ ... ....+.++.+++++.++++.+++.+ ..+++.+..+.+++.+.+ .+
T Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L 319 (406)
T 3cai_A 244 MNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMV----SL 319 (406)
T ss_dssp HHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHH----HH
Confidence 887653210000 000 0133468888888889999876522 244555555555554433 34
Q ss_pred hcCCCeeEec---ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--------------CEEEEecCCCC
Q 002941 772 SSHRTVQRVV---ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------------NVIYLMCGPCS 834 (863)
Q Consensus 772 ~~~p~v~~vr---g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--------------~~lr~~ppl~~ 834 (863)
++.+.+.-+. ..+.++.+.+.... ...+.+.|.++||++++.. +.+|+.++..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~ 390 (406)
T 3cai_A 320 RSLPLVMLIGRPEAQIPVVSFAVHKVP---------ADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYS 390 (406)
T ss_dssp HTCTTEEECCCCSSBCSEEEEEETTBC---------HHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTC
T ss_pred hcCCCeEEcCCccccCCEEEEEECCcC---------HHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCC
Confidence 4455432221 23557777775321 4568888999999998642 68999988888
Q ss_pred cHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQ 848 (863)
Q Consensus 835 t~eeid~~v~~L~~ 848 (863)
+++++++++++|++
T Consensus 391 t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 391 TMAEVDQLVRALAS 404 (406)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998864
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=195.45 Aligned_cols=353 Identities=13% Similarity=0.073 Sum_probs=223.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCC--CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPE--NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~--~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeA 473 (863)
.|+| .+.+|. .++.+.+++.++++++.... ..+ ...+...++.++|+++++.+ .+.|+|+++++++
T Consensus 69 iyld------~~~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a 140 (465)
T 3e9k_A 69 IYFL------GNSLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVN 140 (465)
T ss_dssp EECB------TTTSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHH
T ss_pred EEec------CCccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHH
Confidence 6777 345676 57788888888887654221 101 12244567888899888754 4689999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcc
Q 002941 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (863)
Q Consensus 474 vE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (863)
+..+++...+ .|. .+.+||+...+||+......+......+ .+. .+
T Consensus 141 l~~~~~~~~~-----~~~-------------~~~~Vl~~~~~~~s~~~~~~~~~~~~G~------------~~~----~~ 186 (465)
T 3e9k_A 141 LHLLMLSFFK-----PTP-------------KRYKILLEAKAFPSDHYAIESQLQLHGL------------NIE----ES 186 (465)
T ss_dssp HHHHHHHHCC-----CCS-------------SSCEEEEETTCCHHHHHHHHHHHHHTTC------------CHH----HH
T ss_pred HHHHHHHhcc-----ccC-------------CCCEEEEcCCcCCchHHHHHHHHHHcCC------------cce----ee
Confidence 9999987621 111 1368999999999865533322100000 000 00
Q ss_pred cccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 002941 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (863)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g 633 (863)
.+...+.+..+ .-| .+.+++.+++ +.+++++|+++.+ ++..
T Consensus 187 ----~v~~~~~~~~~---------------------~~d--------~~~l~~~i~~-----~~~~~~lv~~~~~-~n~t 227 (465)
T 3e9k_A 187 ----MRMIKPREGEE---------------------TLR--------IEDILEVIEK-----EGDSIAVILFSGV-HFYT 227 (465)
T ss_dssp ----EEEECCCTTCS---------------------SCC--------HHHHHHHHHH-----HGGGEEEEEEESB-CTTT
T ss_pred ----eEEEecCCCCC---------------------ccC--------HHHHHHHHHh-----cCCCeEEEEEeCc-ccCc
Confidence 00000111000 001 2456666652 2247899999997 9999
Q ss_pred CceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhh
Q 002941 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l 711 (863)
|.+.+ +++|.++|++||+++|+|++|+ +|.. ......++ .|++++ .|.+.+|..++|++.+++++.+.+
T Consensus 228 G~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~--~~~~~~~~--~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~ 298 (465)
T 3e9k_A 228 GQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV--ELYLHDWG--VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTI 298 (465)
T ss_dssp CBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHHHT--CCEEEECSSSTTCCCTTCCCEEEECGGGTTTS
T ss_pred ceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCchhhcC--CCEEEECcccccccCCCceEEEEEcHHHHhhc
Confidence 98876 8999999999999999999995 4332 22233333 587765 599965545789999999987765
Q ss_pred hcCCc-cc------ee--ecccC----------CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 712 VGDSK-LK------AL--LHGHS----------YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 712 ~~~~~-~~------~~--~~~~T----------~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
..... +. .+ ...++ .+.+++++++..++++.+++.+ .++++++...+.+++.+.+.+.+.
T Consensus 299 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~ 377 (465)
T 3e9k_A 299 KPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQAT-MKALRKKSVLLTGYLEYLIKHNYG 377 (465)
T ss_dssp CCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 42100 00 00 00011 1567889999999999886432 345555566666655555443321
Q ss_pred c------CCCee-----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEec-CCCCcHHHH
Q 002941 773 S------HRTVQ-----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMC-GPCSSPEVC 839 (863)
Q Consensus 773 ~------~p~v~-----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~p-pl~~t~eei 839 (863)
. .+.+. +.+..|.++.+.+..+ ...+.+.|.++||++...+ +.+|++| |+.+|++||
T Consensus 378 ~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi 447 (465)
T 3e9k_A 378 KDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDV 447 (465)
T ss_dssp ---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHH
T ss_pred ccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHH
Confidence 1 12222 2234588888887622 2357888999999998664 8999998 899999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEF 853 (863)
Q Consensus 840 d~~v~~L~~~l~~l 853 (863)
++++++|++++++.
T Consensus 448 ~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 448 YKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988653
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-18 Score=190.62 Aligned_cols=227 Identities=9% Similarity=-0.002 Sum_probs=155.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH-HcCCeEEEecccc--cccccCCcc-hh--
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFT--GFWRLGVET-TA-- 675 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~-~~gilLI~DEV~T--GfGRtG~~~-a~-- 675 (863)
+.+++.+. ..++.+|++.|..++..|. +.+.+++++|.++|+ +||+++|+||+|. +|+..|..+ ..
T Consensus 168 ~~l~~~l~-------~~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 239 (422)
T 3d6k_A 168 GVVRELVK-------DPQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIE 239 (422)
T ss_dssp HHHHHHHT-------STTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhh
Confidence 45666663 1356777766654788886 558899999999999 9999999999996 475555321 22
Q ss_pred -----hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhH
Q 002941 676 -----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTN 749 (863)
Q Consensus 676 -----e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~ 749 (863)
+..+...++.+|||.++.| +++|++++++++++.+.. .....+++.++++++++.++|+.... .++.
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 312 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYAS------HANVRGIGPNKLNQLAHAQFFGDVAGLKAHM 312 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHH
T ss_pred HhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhCcchHHHHH
Confidence 1234445566899987778 899999999999988764 12445677899999988887762100 1233
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------
Q 002941 750 HNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------ 822 (863)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------ 822 (863)
+++++..+..++.+.+.+.+.+...+.+..+. ..|+++.+++.... ...+...|.++||++.|.
T Consensus 313 ~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~---------~~~~~~~l~~~gV~v~~~g~~f~~ 383 (422)
T 3d6k_A 313 LKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT---------ASRVVELAKEAGIALTGAGSSFPL 383 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTC---------HHHHHHHHHHTTEECCCTTTTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCC---------HHHHHHHHHHCCeEEEcCccccCC
Confidence 33444444444444444444444444343333 35778888886421 345778889999999872
Q ss_pred -----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 823 -----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 823 -----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+|+.+.. ++++++++++++|.++++++
T Consensus 384 ~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 384 HNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp GCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 2678987665 89999999999999998765
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=192.65 Aligned_cols=219 Identities=10% Similarity=-0.015 Sum_probs=149.0
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHH-HHcCCeEEEecccccc--cccCC----cchh----hhcCCCCcEEE
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGF--WRLGV----ETTA----DLLGCVPDIAC 686 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc-~~~gilLI~DEV~TGf--GRtG~----~~a~----e~~gv~PDivt 686 (863)
.++.+|++.|..++..|.+. +.+.+++|.++| ++||+++|+||+++++ +..+. .+.. ...+...++.+
T Consensus 179 ~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 257 (427)
T 3ppl_A 179 PQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTS 257 (427)
T ss_dssp TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEE
T ss_pred CCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEec
Confidence 46788888876578888665 566699999999 9999999999999884 33331 1111 13344555679
Q ss_pred eccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-hhhHHhHHHHHHHHHHHHHH
Q 002941 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 687 ~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~-~~l~~~l~~~~~~l~~~l~~ 765 (863)
|||.++.| +++|++++++++++.+.. .....+++.++++++++.+.|+.... .+...+..+..+..++.+.+
T Consensus 258 ~SK~~~~G-~r~G~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (427)
T 3ppl_A 258 TSKITLAG-AGVSFFLTSAENRKWYTG------HAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE 330 (427)
T ss_dssp STTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcC-ccEEEEEcCHHHHHHHHH------HhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99997778 899999999999988764 12445778889998888887763100 11222333333333333333
Q ss_pred HHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCCC
Q 002941 766 ELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGPC 833 (863)
Q Consensus 766 ~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl~ 833 (863)
.+.+.+...+.+.. ....|+++.+++.... ...+.+.|.++||++.|. .+.+|+.+...
T Consensus 331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~---------~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~ 401 (427)
T 3ppl_A 331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPGT---------ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP 401 (427)
T ss_dssp HHHHHHGGGTCCEECCCSBSSCEEEECSTTC---------HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS
T ss_pred HHHHhcCCCCceEEeCCCccEEEEEECCcch---------HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC
Confidence 44333333332222 2234788888886432 456788899999999882 37899986443
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~l~ 854 (863)
++++|++++++|.++++++.
T Consensus 402 -~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 402 -PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-17 Score=182.06 Aligned_cols=285 Identities=13% Similarity=0.036 Sum_probs=188.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..|++.+++ .| .+||+...+||+
T Consensus 61 r~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~~---------~g------------d~vl~~~~~~~~ 116 (398)
T 1gc0_A 61 RISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTLLR---------PG------------DEVLLGNTLYGC 116 (398)
T ss_dssp --CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESSCCSH
T ss_pred CCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhc---------CC------------CEEEEeCCCchh
Confidence 34678889999999999884 5788899999999999987621 12 579999999988
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......+... . |+....+|. .|
T Consensus 117 ~~~~~~~~~~~---~------------------------g~~~~~~~~------------------------~d------ 139 (398)
T 1gc0_A 117 TFAFLHHGIGE---F------------------------GVKLRHVDM------------------------AD------ 139 (398)
T ss_dssp HHHHHHHTGGG---G------------------------TCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHHH---c------------------------CCEEEEECC------------------------CC------
Confidence 64332111000 0 000000110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.++ +++.+|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+.+ ..+... .+
T Consensus 140 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~~~---~~ 200 (398)
T 1gc0_A 140 --LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQRPL---EL 200 (398)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCCGG---GG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCCch---hh
Confidence 234555553 36789999997 899998875 999999999999999999999643 443322 23
Q ss_pred CCCCcEEEeccccCCCCCCc-eeeeccHHHHH-hhhcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCVPDIACYGKLLTGGVIPL-AATLATNAVFD-SFVGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~PDivt~sKgLggG~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
+....+.+++|.++++..|+ |++++++++++ .+.. ..+. .+.+.+|+++++++++++.+. ...++..++
T Consensus 201 ~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 272 (398)
T 1gc0_A 201 GADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ------GLKDMTGAVLSPHDAALLMRGIKTLN--LRMDRHCAN 272 (398)
T ss_dssp TCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT------HHHHHTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred CceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH------HhhccCCCCCCHHHHHHHHhccchHH--HHHHHHHHH
Confidence 44333447899999755787 88888888665 4442 1233 456679999999988887652 234555566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeE------------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc
Q 002941 756 RRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV 817 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV 817 (863)
.+.+.+.|. +++.+.. .++.|.++.+++... .......+.+.|+
T Consensus 273 ~~~l~~~L~--------~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~l~~~~i 334 (398)
T 1gc0_A 273 AQVLAEFLA--------RQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IGAGRRFMNALQL 334 (398)
T ss_dssp HHHHHHHHH--------TCTTEEEEEEC----------------CCTTEEEEEETTH----------HHHHHHHHHHCSS
T ss_pred HHHHHHHHh--------cCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HHHHHHHHHhCCC
Confidence 666655442 2332222 136788999988532 2234556667777
Q ss_pred EEEe---c----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 818 YMRP---L----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 818 ~~~p---~----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.+. + .+.+|++++...++++|+.+.++|+++
T Consensus 335 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 335 FSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 7643 1 278999999989999999998888754
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=185.86 Aligned_cols=348 Identities=12% Similarity=0.039 Sum_probs=202.6
Q ss_pred eEEeeecccccccCCCCCc--HHHHHHHHHHHHhcccc--cCCCCCChHHHHHHHHHHhhcCCC-CCC--eEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQ--IELARDMGYTAARFGHV--MFPENVYEPALECAELLLQGVGKG-WAS--RAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~--p~V~~Ai~~q~~~~~~~--~~~~~~~~~~~eLae~L~~~~p~~-~~~--~v~f~~SGSe 472 (863)
.++|+..|++..+-|+ .. |.|.+|+.+++++.... ....+..+....+++.+....+.. ..+ .++|+++|++
T Consensus 50 ~~i~l~~G~y~d~~~~-~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGK-IPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SCEECCCCSCCCTTSC-CCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCC-ccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 6789999887777666 44 89999999998862211 111122344445555554322100 024 7999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
|++.++++. ... . .| .+|++...+|++........+..
T Consensus 129 al~~~~~~~-~~~--~----~g------------d~Vlv~~p~~~~~~~~~~~~g~~----------------------- 166 (420)
T 4f4e_A 129 ALKIGADFL-RTL--N----PK------------AKVAISDPSWENHRALFDMAGFE----------------------- 166 (420)
T ss_dssp HHHHHHHHH-HHH--C----TT------------CCEEEEESCCHHHHHHHHHTTCC-----------------------
T ss_pred HHHHHHHHH-HHh--C----CC------------CEEEEeCCCcHhHHHHHHHcCCe-----------------------
Confidence 999998865 222 0 12 56999999998865443322110
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
+..+++.+.. +..-| .+.+++.+.+ .+.+..++++... ++.
T Consensus 167 ------~~~v~~~~~~-------------------~~~~d--------~~~l~~~l~~-----~~~~~~~v~i~~p-~NP 207 (420)
T 4f4e_A 167 ------VVAYPYYDAK-------------------TNGVN--------FDGMLAALNG-----YEPGTIVVLHACC-HNP 207 (420)
T ss_dssp ------EEEEECEETT-------------------TTEEC--------HHHHHHHHTT-----CCTTCEEEEECSS-CTT
T ss_pred ------EEEeeeeccc-------------------cCccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-CCC
Confidence 0111110000 00011 2456666753 2345667777665 899
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhc-CCCCcEE---EeccccC-CCCCCceeeec--
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLA-- 703 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~-gv~PDiv---t~sKgLg-gG~~Pigav~~-- 703 (863)
.|.+ ++.+.+++|.++|++||+++|+||++.+|+..|. ......+ +..++++ +|||.++ .| +++|++++
T Consensus 208 tG~~-~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~~~ 285 (420)
T 4f4e_A 208 TGVD-LNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSIIT 285 (420)
T ss_dssp TCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEEEC
T ss_pred CCCC-CCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEEEc
Confidence 9965 4788899999999999999999999999976542 2222222 2333433 6899998 68 89999753
Q ss_pred -cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh--cC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 002941 704 -TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF--KD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (863)
Q Consensus 704 -~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l--~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~ 778 (863)
++++++.+...- .......+.+.++++++++.+.|+.. ++ .+..+++++..+..++.+.+.+.+.... +.+.
T Consensus 286 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~ 362 (420)
T 4f4e_A 286 DSKDEAARVLSQL--KRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFS 362 (420)
T ss_dssp SSHHHHHHHHHHH--HHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCT
T ss_pred CCHHHHHHHHHHH--HHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCce
Confidence 566655432110 00111233345667777766666531 10 1223444444445555444333322110 1222
Q ss_pred Ee-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 779 RV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 779 ~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.. ...|+++.+.+. ...+...+.++||++.|.+ |+.. ..++++++++++++|.+++
T Consensus 363 ~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~---Ris~-~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 363 FINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG---RICV-AALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp HHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS---EEEG-GGCCTTTHHHHHHHHHHHH
T ss_pred eECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC---eEEE-ecCCHHHHHHHHHHHHHHh
Confidence 22 334555544332 2345667778999999865 6654 3457888999999998875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=184.52 Aligned_cols=322 Identities=16% Similarity=0.082 Sum_probs=203.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.+|+|.+|+.+++.. +.. ....+...++.++|+++++.+ ..+.++|++||++|++.+++.++
T Consensus 11 ~~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~------------- 73 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLD--PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD------------- 73 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTC--HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-------------
T ss_pred CCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-------------
Confidence 478999988877653 110 012344788999999988742 12579999999999999988661
Q ss_pred cCCCccccccccEEEEecCCCccCcccc-ceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~ga-ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
+.+|++...+||+..... ....|. .+..++.+..+
T Consensus 74 ----------~d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------ 109 (353)
T 2yrr_A 74 ----------RGPVLVLVNGAFSQRVAEMAALHGL----------------------------DPEVLDFPPGE------ 109 (353)
T ss_dssp ----------CCCEEEEECSHHHHHHHHHHHHTTC----------------------------CEEEEECCTTS------
T ss_pred ----------CCcEEEEcCCCchHHHHHHHHHcCC----------------------------ceEEEeCCCCC------
Confidence 035888888999852111 111110 01111111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+.+ .++.+|+++.. ++..|.+.+ +++|.++|++||
T Consensus 110 ---------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~ 154 (353)
T 2yrr_A 110 ---------------PVD--------PEAVARALKR-------RRYRMVALVHG-ETSTGVLNP----AEAIGALAKEAG 154 (353)
T ss_dssp ---------------CCC--------HHHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHT
T ss_pred ---------------CCC--------HHHHHHHHHh-------CCCCEEEEEcc-CCCcceecC----HHHHHHHHHHcC
Confidence 011 2456666642 14557788886 899998876 889999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCcc-------cee--ecc
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKL-------KAL--LHG 723 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~-------~~~--~~~ 723 (863)
+++|+||+| ++|+.. +....++ +|++++ +|+++|+ .++|++++++++++.+...... ... ...
T Consensus 155 ~~li~D~a~-~~~~~~--~~~~~~~--~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 228 (353)
T 2yrr_A 155 ALFFLDAVT-TLGMLP--FSMRAMG--VDYAFTGSQKCLSAP-PGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGG 228 (353)
T ss_dssp CEEEEECTT-TTTTSC--CCHHHHT--CSEEECCTTSTTCCC-SSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCC
T ss_pred CeEEEEcCc-cccccc--ccccccC--ceEEEecCcccccCC-CceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCC
Confidence 999999999 677653 2333343 688876 6998876 4689999999998876410000 000 011
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchH
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~ 803 (863)
.+++.++.+++++.++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+......+.++.+.+....
T Consensus 229 ~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~-------- 297 (353)
T 2yrr_A 229 YHHTTPVLLHYALLEALDLVLEEG-VAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLVVRPPEGV-------- 297 (353)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEEEECCTTC--------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEEEECCCCC--------
Confidence 234567888888889998875432 2344444445555444444331 22111111124566677764221
Q ss_pred HHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHH-HHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCS-QLLLKLYQRLE 851 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid-~~v~~L~~~l~ 851 (863)
...++.+.|.++||++++. ++.+|+.++...++++++ +++++|+++++
T Consensus 298 ~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 298 DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 1467889999999999864 378999977778999998 99999988765
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-17 Score=184.39 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=142.2
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh---hhcCCCCcEEEeccccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~---e~~gv~PDivt~sKgLggG~ 695 (863)
++.+|++... ++..|.+ .+.+.+++|.++|++||++||+||+|..+ ..+..+.. ...+...++.++||.+..|
T Consensus 206 ~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G- 281 (444)
T 3if2_A 206 RIGAICCSRP-TNPTGNV-LTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG- 281 (444)
T ss_dssp CEEEEEEESS-CTTTCCC-CCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG-
T ss_pred CceEEEeCCC-CCCCCCc-CCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC-
Confidence 4555555433 7888875 46778999999999999999999999532 22211110 1123334466899987778
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh----HHHHHHHHHHHHHHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN----IIPERRILRELWDLELIQQI 771 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~----l~~~~~~l~~~l~~~l~~~~ 771 (863)
+++|++++++++++.+.. ..+..+++.++++++++.+.++.. ++... +.+..+..++.+.+.+.+.+
T Consensus 282 ~r~G~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 352 (444)
T 3if2_A 282 MRTGIIVADAKVIEAVSA------MNAVVNLAPTRFGAAIATPLVAND---RIKQLSDNEIKPFYQKQATLAVKLLKQAL 352 (444)
T ss_dssp GCCEEEECCHHHHHHHHH------HHHHHHSSCCCHHHHHHHHHHHTS---HHHHHHHHTHHHHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEECHHHHHHHHH------HHHhccCCCChHHHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998864 234567788999999998888742 22222 22222333333333333333
Q ss_pred hcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---------------CEEEEecCCCCcH
Q 002941 772 SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---------------NVIYLMCGPCSSP 836 (863)
Q Consensus 772 ~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---------------~~lr~~ppl~~t~ 836 (863)
............|+++.+.+.... .....+...|.++||++.|.. +.+|+.++. ++
T Consensus 353 ~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~ 423 (444)
T 3if2_A 353 GDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DE 423 (444)
T ss_dssp SSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CH
T ss_pred ccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CH
Confidence 222211222456888888886421 015568888999999998731 479998775 99
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 837 eeid~~v~~L~~~l~~l~ 854 (863)
++|++++++|.++++++.
T Consensus 424 e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 424 QTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=179.40 Aligned_cols=304 Identities=13% Similarity=0.054 Sum_probs=194.0
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 412 ~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.++| .+|+.++++.. ....+.. ....++...+++++|+++.+. +.++|++||++|+..|++.+++
T Consensus 29 ~~~~-~~~~~~~~~~~--~~~~~~y-~~~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~al~~l~~-------- 93 (412)
T 2cb1_A 29 AYGF-KTLEEGQERFA--TGEGYVY-ARQKDPTAKALEERLKALEGA---LEAVVLASGQAATFAALLALLR-------- 93 (412)
T ss_dssp BCCC-SSHHHHHHHHH--HCCSCSB-TTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTCC--------
T ss_pred eeec-CChHHHHHHhc--cccCcCc-CCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC--------
Confidence 5666 56766555543 2223321 223567889999999999873 5899999999999999987621
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| .+||+....||+.......... . . |.....+|
T Consensus 94 -~g------------d~vi~~~~~~~~~~~~~~~~~~--~-~------------------------g~~~~~~~------ 127 (412)
T 2cb1_A 94 -PG------------DEVVAAKGLFGQTIGLFGQVLS--L-M------------------------GVTVRYVD------ 127 (412)
T ss_dssp -TT------------CEEEEETTCCHHHHHHHHHTTT--T-T------------------------TCEEEEEC------
T ss_pred -CC------------CEEEEeCCCchhHHHHHHHHHH--H-c------------------------CCEEEEEC------
Confidence 12 5799999988764322111000 0 0 00000111
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
.| .+.+++.+. .++.+|++|++ ++..|.+.+ +++|.++|+
T Consensus 128 -------------------~~--------~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~l~~ 167 (412)
T 2cb1_A 128 -------------------PE--------PEAVREALS--------AKTRAVFVETV-ANPALLVPD----LEALATLAE 167 (412)
T ss_dssp -------------------SS--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHH
T ss_pred -------------------CC--------HHHHHHHhc--------cCCeEEEEeCC-CCCCccccc----HHHHHHHHH
Confidence 00 234555553 35788999997 899998875 999999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeeccH------------------------
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN------------------------ 705 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~~------------------------ 705 (863)
+||+++|+||+|++++.... ..+..+|+++ ++|.++++..++|++++.+
T Consensus 168 ~~~~~li~D~~~~~~~~~~~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 242 (412)
T 2cb1_A 168 EAGVALVVDNTFGAAGALCR-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEA 242 (412)
T ss_dssp HHTCEEEEECGGGTTTTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHH
T ss_pred HcCCEEEEECCCccccccCC-----ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhc
Confidence 99999999999976532222 2234589886 7899986447888887654
Q ss_pred ----HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-
Q 002941 706 ----AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV- 780 (863)
Q Consensus 706 ----~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v- 780 (863)
++.+.++.. ......+..+|.+++.+++.++.++ ...++..++.+++.+ .+.+++.|..+
T Consensus 243 ~~~~~~~~~~r~~-----~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~~~~~l~~--------~L~~~~~v~~v~ 307 (412)
T 2cb1_A 243 LRARCFPERVRTL-----GLSLCGMALSPFNAYLLFQGLETVA--LRVARMSETARFLAE--------RLQGHPKVKALR 307 (412)
T ss_dssp HGGGHHHHHHHHH-----HTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHH--------HHHTCTTCSEEE
T ss_pred cchHHHHHHHHHH-----HHHhcCCCCChHHhHHHHcCCchHH--HHHHHHHHHHHHHHH--------HHHcCCCeeEEE
Confidence 233333210 0012233568888888888877652 223333344444433 34455655544
Q ss_pred -----------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------------------
Q 002941 781 -----------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------------- 822 (863)
Q Consensus 781 -----------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------------- 822 (863)
++.|.++.+++ .+ ...+...|.+.||++ ..
T Consensus 308 ~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~ 375 (412)
T 2cb1_A 308 YPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLK 375 (412)
T ss_dssp CTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSC
T ss_pred CCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCC
Confidence 46788999999 43 334566666788886 22
Q ss_pred ----------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 823 ----------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 823 ----------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+.+|++.....++++|+.++++|++
T Consensus 376 ~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 376 EEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 36899998888899999998888764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=183.66 Aligned_cols=256 Identities=13% Similarity=0.055 Sum_probs=172.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.++|++||++|++.|++.+++ .| .+||+....|||
T Consensus 62 r~~~~~~~~l~~~la~~~g~---~~~~~~~sGt~A~~~al~~~~~---------~g------------d~Vi~~~~~y~~ 117 (392)
T 3qhx_A 62 RTGNPTRTALEAALAAVEDA---AFGRAFSSGMAAADCALRAMLR---------PG------------DHVVIPDDAYGG 117 (392)
T ss_dssp TTCCHHHHHHHHHHHHHTTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEETTCCHH
T ss_pred CCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCcch
Confidence 34678888999999999873 5899999999999999997621 12 579999999987
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... .. |.....+|. +|
T Consensus 118 ~~~~~~~~~~--------------~~-------------g~~~~~v~~------------------------~d------ 140 (392)
T 3qhx_A 118 TFRLIDKVFT--------------GW-------------NVEYTPVAL------------------------AD------ 140 (392)
T ss_dssp HHHHHHHTGG--------------GG-------------TCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------hc-------------CcEEEEeCC------------------------CC------
Confidence 5322111100 00 000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||++||+||+|+.+ +.....
T Consensus 141 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~------~~~~~~ 199 (392)
T 3qhx_A 141 --LDAVRAAIR--------PTTRLIWVETP-TNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP------ALQQPL 199 (392)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT------TTCCGG
T ss_pred --HHHHHHhhC--------CCCeEEEEECC-CCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc------ccCChH
Confidence 244555553 36889999997 899998876 999999999999999999999522 222334
Q ss_pred CCCCcEEE--eccccCCCC-CCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIAC--YGKLLTGGV-IPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDivt--~sKgLggG~-~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+..+|+++ ++|.++++. +++|+++++ +++++.+.. ..+..++..+|+.+++++..++.+.. ..++..+
T Consensus 200 ~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~------~~~~~g~~~~~~~~~~~~~~l~~l~~--~~~~~~~ 271 (392)
T 3qhx_A 200 SLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF------LQNGAGAVPGPFDAYLTMRGLKTLVL--RMQRHSE 271 (392)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHH
T ss_pred HhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH------HHHhcCCCCCHHHHHHHHhhhhHHHH--HHHHHHH
Confidence 45689987 899998642 578888887 688877753 22446678899999998888876532 1334444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
+.+++.+ .+.++|.+..| +|.|.++++++..+. ..+..+...|...|
T Consensus 272 ~~~~l~~--------~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-------~~~~~~~~~l~~~~ 336 (392)
T 3qhx_A 272 NAAAVAE--------FLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-------TAAEQLCAKTNIFI 336 (392)
T ss_dssp HHHHHHH--------HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-------HHHHHHHHHCSSSE
T ss_pred HHHHHHH--------HHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-------HHHHHHHHhCCCce
Confidence 4444433 34566666555 677999999997531 23556666666555
Q ss_pred cEE
Q 002941 817 VYM 819 (863)
Q Consensus 817 V~~ 819 (863)
+.+
T Consensus 337 ~~~ 339 (392)
T 3qhx_A 337 LAE 339 (392)
T ss_dssp ECS
T ss_pred ECC
Confidence 543
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-17 Score=181.49 Aligned_cols=344 Identities=12% Similarity=0.057 Sum_probs=197.4
Q ss_pred eEEeeecccccccCCCCCc--HHHHHHHHH-HHHhccccc--CCCCCChHHHHHHHHHHhhcCC--CCCC--eEEEeCCh
Q 002941 400 QQFDACASWWTQGPDATLQ--IELARDMGY-TAARFGHVM--FPENVYEPALECAELLLQGVGK--GWAS--RAYFSDNG 470 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~--p~V~~Ai~~-q~~~~~~~~--~~~~~~~~~~eLae~L~~~~p~--~~~~--~v~f~~SG 470 (863)
.++|+..|++..+.|+ .. |.|.+|+.+ +++...... ...+..+...++++.+....+. . .+ .++|+++|
T Consensus 27 ~~i~l~~g~y~d~~~~-~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-~~~~~i~~t~g~ 104 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGI-IPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK-QQRVATIQTLGG 104 (397)
T ss_dssp CCEECSSCCCCCTTSC-CCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-TTCEEEEEESHH
T ss_pred CeEEEeeeEEECCCCC-ccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc-ccceEEEEcCCc
Confidence 6788888876666665 34 899999999 887532211 1112223344444444432110 1 25 79999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCC
Q 002941 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (863)
Q Consensus 471 SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~ 550 (863)
++|++.++++. .... .| .+|++...+|++....+...+..
T Consensus 105 ~~a~~~~~~~~-~~~~------~g------------d~vl~~~p~~~~~~~~~~~~g~~--------------------- 144 (397)
T 3fsl_A 105 SGALKVGADFL-KRYF------PE------------SGVWVSDPTWENHVAIFAGAGFE--------------------- 144 (397)
T ss_dssp HHHHHHHHHHH-HHHC------TT------------CCEEEESSCCHHHHHHHHHTTCC---------------------
T ss_pred HHHHHHHHHHH-HhcC------CC------------CeEEEeCCCchhHHHHHHHcCCc---------------------
Confidence 99999998865 2220 12 56999999999865433322110
Q ss_pred CcccccCceeeecCc--chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 002941 551 PTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (863)
Q Consensus 551 p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPV 628 (863)
+..++.. +.+ .-| .+.+++.+.+ ...+..++++...
T Consensus 145 --------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~p 182 (397)
T 3fsl_A 145 --------VSTYPWYDEATN---------------------GVR--------FNDLLATLKT-----LQAGSIVLLHPCC 182 (397)
T ss_dssp --------EEEECCEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEECSSS
T ss_pred --------eEEEeeeeccCC---------------------cCc--------HHHHHHHHHh-----CCCCCEEEEeCCC
Confidence 0111110 000 001 2456667753 2234566666554
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC--Ccchhhhc-CCCCc---EEEeccccC-CCCCCceee
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLL-GCVPD---IACYGKLLT-GGVIPLAAT 701 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG--~~~a~e~~-gv~PD---ivt~sKgLg-gG~~Pigav 701 (863)
++..|.+ .+.+.+++|.++|++||+++|+||++++|...+ .......+ +..++ +.++||.++ .| +++|++
T Consensus 183 -~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~~ 259 (397)
T 3fsl_A 183 -HNPTGAD-LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGL 259 (397)
T ss_dssp -CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEEE
T ss_pred -CCCCCcC-CCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcC-CCeeEE
Confidence 8888864 577789999999999999999999999886542 22222222 22333 337899998 68 899998
Q ss_pred ec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHh--cC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 702 LA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWF--KD--PQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 702 ~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l--~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++ ++++++.+.... .......+...++++++++.+.|+.- .+ .+..+++++..+..++.+.+.+.+.....
T Consensus 260 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 337 (397)
T 3fsl_A 260 SVMCEDAEAAGRVLGQL--KATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPER 337 (397)
T ss_dssp EEECSSHHHHHHHHHHH--HHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred EEecCCHHHHHHHHHHH--HHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 556665432210 00011223344666766666665521 00 22234444545555555544443321110
Q ss_pred CCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+... ...|.++.+.+. ...+...|.++||++.|.+ |+.. ..+++++|++++++|+++
T Consensus 338 -~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~---Ris~-~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 338 -NFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG---RMCV-AGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp -CCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC---EEEG-GGCCTTTHHHHHHHHHHH
T ss_pred -CceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC---eEEE-EecCHhhHHHHHHHHHhh
Confidence 12112 223555544432 2346667788999999866 6654 345778899999999875
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-17 Score=182.36 Aligned_cols=326 Identities=11% Similarity=0.012 Sum_probs=202.8
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC-eEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~-~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.+|++.+|+.+++.. +. .....+...++.++|+++++.+ .+ .++|++||++|++.+++.+++ +|
T Consensus 30 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~---------~g- 94 (393)
T 2huf_A 30 APQRVLDAMSRPILG--HL--HPETLKIMDDIKEGVRYLFQTN-NIATFCLSASGHGGMEATLCNLLE---------DG- 94 (393)
T ss_dssp CCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHHCC---------TT-
T ss_pred CCHHHHHHHHhhhcc--CC--CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHHhC---------CC-
Confidence 479999988876543 11 1112356788999999988753 23 799999999999999987621 12
Q ss_pred cCCCccccccccEEEEecCCCccCccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
.+|++...+||+.....+. ..|. .+..++.+..+
T Consensus 95 -----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------ 129 (393)
T 2huf_A 95 -----------DVILIGHTGHWGDRSADMATRYGA----------------------------DVRVVKSKVGQ------ 129 (393)
T ss_dssp -----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC------
T ss_pred -----------CEEEEECCCcchHHHHHHHHHcCC----------------------------eeEEEeCCCCC------
Confidence 5799999999984211110 0000 01111111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+.+ .++.+|+++.. ++..|.+.+ +++|.++|++||
T Consensus 130 ---------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~ 174 (393)
T 2huf_A 130 ---------------SLS--------LDEIRDALLI-------HKPSVLFLTQG-DSSTGVLQG----LEGVGALCHQHN 174 (393)
T ss_dssp ---------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTT
T ss_pred ---------------CCC--------HHHHHHHHhc-------cCCcEEEEEcc-CCCccccCC----HHHHHHHHHHcC
Confidence 011 2445566642 13456777776 899998876 899999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCc-cceee----------
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALL---------- 721 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~-~~~~~---------- 721 (863)
+++|+||++ ++|.. .+....+ .+|++++ +|+++|+ .++|++++++++++.+..... ...+.
T Consensus 175 ~~li~D~a~-~~~~~--~~~~~~~--~~d~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
T 2huf_A 175 CLLIVDTVA-SLGGA--PMFMDRW--EIDAMYTGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYW 248 (393)
T ss_dssp CEEEEECTT-TBTTB--CCCTTTT--TCSEEECCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHT
T ss_pred CEEEEEccc-ccCCC--Ccchhhc--CccEEEECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhh
Confidence 999999998 46543 2222222 4798876 5998865 567999999999988764210 01111
Q ss_pred -----cccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccC
Q 002941 722 -----HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAA 794 (863)
Q Consensus 722 -----~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~ 794 (863)
..+++ +.+..+++++.++|+.+.+.. .+++.+..+.+++.+.+.+.+. ....+.... ..+.++.+.+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 2huf_A 249 GCFGRPRIYHHTISSTLLYGLREAIAMACEEG-LPALIARHEDCAKRLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG 325 (393)
T ss_dssp TCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHc--CCeeccCccccCCcEEEEEcCCC
Confidence 11222 346677777778888764322 2333444444455444443332 222221111 1245777777421
Q ss_pred CcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
. ...++.+.|+++ ||++++. ++.+|+.+ ++.++++++++++++|+++++++.
T Consensus 326 ~--------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 326 V--------DWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp C--------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred C--------CHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 1 145688888865 9999863 37899987 556789999999999999987764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-16 Score=171.14 Aligned_cols=339 Identities=13% Similarity=0.039 Sum_probs=209.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC-----CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||..+. +. .+|.+.+|+.+++.+........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 2 iyld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~ 73 (382)
T 4hvk_A 2 AYFDYTSA------KP-VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CC-CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHH
T ss_pred EeecCCCc------CC-CCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHH
Confidence 37775542 23 579999999999987422111111 1234568889999988753 35799999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.... ++... | ..||+....|++.......+.. . + .
T Consensus 74 ~~~~~~~~~-~~~~~----g------------d~vi~~~~~~~~~~~~~~~~~~-~---g-----------~-------- 113 (382)
T 4hvk_A 74 NLAIIGYAM-RNARK----G------------KHILVSAVEHMSVINPAKFLQK-Q---G-----------F-------- 113 (382)
T ss_dssp HHHHHHHHH-HHGGG----C------------CEEEEETTCCHHHHHHHHHHHH-T---T-----------C--------
T ss_pred HHHHHHhhh-hhcCC----C------------CEEEECCCCcHHHHHHHHHHHh-c---C-----------C--------
Confidence 999997732 21111 1 5788888887765433222110 0 0 0
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++....+ .-| .+.+++.+. .++.+|++++. ++..|
T Consensus 114 ---~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG 152 (382)
T 4hvk_A 114 ---EVEYIPVGKYG---------------------EVD--------VSFIDQKLR--------DDTILVSVQHA-NNEIG 152 (382)
T ss_dssp ---EEEEECBCTTS---------------------CBC--------HHHHHHHCC--------TTEEEEECCSB-CTTTC
T ss_pred ---EEEEeccCCCC---------------------CcC--------HHHHHHHhc--------cCceEEEEECC-CCCce
Confidence 00111111000 011 244555553 35678999997 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~ 712 (863)
.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..+.++ +|++++ +|.+ |+ ..+|+++++++. .+.
T Consensus 153 ~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~-g~-~g~g~~~~~~~~--~~~ 218 (382)
T 4hvk_A 153 TIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIY-GP-KGVGALWIRKEA--KLQ 218 (382)
T ss_dssp BBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGT-SC-TTCEEEEEETTC--CCC
T ss_pred eeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhc-CC-CceEEEEEcCcc--CcC
Confidence 8876 8899999999999 99999994 4322 22233333 577755 5954 33 358888888764 121
Q ss_pred cCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc----cceEE
Q 002941 713 GDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA----LGTLC 787 (863)
Q Consensus 713 ~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg----~Gl~~ 787 (863)
.... ........+.+.++.+++++.++++.+++ ..++..+..+.+++.+. +.+.+.|.+.-... .+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4hvk_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRII----DNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HHHTTSTTEEECSCSSSBCTTEE
T ss_pred cccccCCCcCccccCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH----HHHhcCCCeEEeCCccccCCCEE
Confidence 1000 00000111344578888888888886642 33445555555555443 33445554432221 23466
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.+.... ...+.+.|.++||++++. .+.+|+.+...+|++++++++
T Consensus 293 ~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~ 363 (382)
T 4hvk_A 293 NVRFSYIE---------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLL 363 (382)
T ss_dssp EEEETTCC---------HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHH
T ss_pred EEEECCCC---------HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHH
Confidence 67664322 456888999999999864 478999988889999999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDKV 856 (863)
Q Consensus 844 ~~L~~~l~~l~~~ 856 (863)
++|+++++++.+.
T Consensus 364 ~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 364 EVLPGVIERLRSM 376 (382)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=185.20 Aligned_cols=321 Identities=12% Similarity=0.041 Sum_probs=201.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|+|+.++... + .|++.+|+.+++++..+ ...+...+|.++|+++++. +.++|++||++|++.+++
T Consensus 31 ~~id~~~~~~~--~----~~~v~~a~~~~~~~~~y-----~~~~~~~~l~~~la~~~~~---~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEE--L----RAETDAAIARVLDSGRY-----LLGPELEGFEAEFAAYCET---DHAVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHH--T----HHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHTTS---SEEEEESCHHHHHHHHHH
T ss_pred cccccCcCCCC--C----CHHHHHHHHHHHhcCCC-----CCchhHHHHHHHHHHHHCC---CeEEEecCHHHHHHHHHH
Confidence 78998876554 2 28999999999876322 1346788999999999873 578999999999999998
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.+ + . . .| .+|++...+||+... ++...|.. +
T Consensus 97 ~~-~-~--~----~g------------d~vl~~~~~~~~~~~-~~~~~g~~----------------------------~ 127 (399)
T 2oga_A 97 GL-G-I--G----PG------------DEVIVPSHTYIASWL-AVSATGAT----------------------------P 127 (399)
T ss_dssp HT-T-C--C----TT------------CEEEEESSSCTHHHH-HHHHTTCE----------------------------E
T ss_pred Hh-C-C--C----Cc------------CEEEECCCccHHHHH-HHHHCCCE----------------------------E
Confidence 76 1 0 0 12 579999999998433 33222100 0
Q ss_pred eeecCcc-hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..++... .+ ..| .+.+++.+. .++.+|++++ ..|.+.+
T Consensus 128 ~~~~~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~n----~tG~~~~ 166 (399)
T 2oga_A 128 VPVEPHEDHP---------------------TLD--------PLLVEKAIT--------PRTRALLPVH----LYGHPAD 166 (399)
T ss_dssp EEECBCSSSS---------------------SBC--------HHHHHHHCC--------TTEEEECCBC----GGGCCCC
T ss_pred EEEecCCCCC---------------------CcC--------HHHHHHhcC--------CCCeEEEEeC----CcCCccC
Confidence 0111100 00 011 234555553 2467777544 3465554
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeecc-HHHHHhhh
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFV 712 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~~-~~i~~~l~ 712 (863)
+++|.++|++||+++|+||+++ +|.... ...++..+|++++| |.+++ | ++|+++++ +++++.+.
T Consensus 167 ----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~ 236 (399)
T 2oga_A 167 ----MDALRELADRHGLHIVEDAAQA-HGARYR---GRRIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLR 236 (399)
T ss_dssp ----HHHHHHHHHHHTCEECEECTTC-TTCEET---TEETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECccc-ccCccC---CeecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHH
Confidence 8999999999999999999995 432211 11234447999884 99987 6 78888886 88877654
Q ss_pred c---CCcccee---ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--e--cc
Q 002941 713 G---DSKLKAL---LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--V--VA 782 (863)
Q Consensus 713 ~---~~~~~~~---~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--v--rg 782 (863)
. ......+ ..+.++..++++++++.++|+.+++ +.++.. .+.+.+ .+.+.+.+.+.- . .+
T Consensus 237 ~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~--~~~~~~----~~~~~l----~~~L~~~~g~~~~~~~~~~ 306 (399)
T 2oga_A 237 MLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDS--WNGRRS----ALAAEY----LSGLAGLPGIGLPVTAPDT 306 (399)
T ss_dssp HHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHH----HHHHHH----HHHTTTCTTCBCCCCCTTE
T ss_pred HHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHH--HHHHHH----HHHHHH----HHHhccCCCccccCCCCCC
Confidence 2 1100000 1134456789999999999986632 223333 333332 233444432211 1 12
Q ss_pred cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC----------------------------CEEEEecCCCC
Q 002941 783 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCS 834 (863)
Q Consensus 783 ~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g----------------------------~~lr~~ppl~~ 834 (863)
.+.++.+.+.... ...+.+.|.++||++++.. +.+|+.++..+
T Consensus 307 ~~~~~~~~~~~~~---------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~ 377 (399)
T 2oga_A 307 DPVWHLFTVRTER---------RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHL 377 (399)
T ss_dssp ECCCSSEEEECSS---------HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTC
T ss_pred cceeEEEEEECCC---------HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCC
Confidence 2232223332221 4578889999999997531 46999888889
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l 853 (863)
|++|+++++++|+++++++
T Consensus 378 t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 378 ERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=178.21 Aligned_cols=319 Identities=14% Similarity=0.029 Sum_probs=202.2
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+|++.+|+.+++.. +. .....+...++.++|+++++.+ .+.+++++||++|++.+++.+++ .|
T Consensus 12 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~~---------~g-- 75 (352)
T 1iug_A 12 LHPKALEALARPQLH--HR--TEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLFA---------PG-- 75 (352)
T ss_dssp CCHHHHHHHHSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHCC---------TT--
T ss_pred CCHHHHHHhccCCCC--cc--CHHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhccC---------CC--
Confidence 479999999877642 10 0011234678999999988753 35899999999999999987621 12
Q ss_pred CCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+|++...+||+.....+ ...|. .+..++.+..+
T Consensus 76 ----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 110 (352)
T 1iug_A 76 ----------ERVLVPVYGKFSERFYEIALEAGL----------------------------VVERLDYPYGD------- 110 (352)
T ss_dssp ----------CEEEEEECSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CeEEEEeCCchhHHHHHHHHHcCC----------------------------ceEEEeCCCCC-------
Confidence 579999999998641111 00010 00111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-- 653 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~-- 653 (863)
.-|. + .++ . .++.+|+++.. ++..|.+.+ +++|.++|++|
T Consensus 111 --------------~~d~--------~----~l~----~---~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 152 (352)
T 1iug_A 111 --------------TPRP--------E----DVA----K---EGYAGLLLVHS-ETSTGALAD----LPALARAFKEKNP 152 (352)
T ss_dssp --------------CCCT--------T----TSC----C---SSCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCT
T ss_pred --------------CCCH--------H----HHh----c---cCCcEEEEEEe-cCCcceecC----HHHHHHHHHhhCC
Confidence 0010 0 111 1 23457788876 899998876 89999999999
Q ss_pred CCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCC-------cccee-ecc
Q 002941 654 KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDS-------KLKAL-LHG 723 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~-------~~~~~-~~~ 723 (863)
|+++|+||+|+ +|... +....+ .+|++++ +|++.|+ ..+|++++++++++.+.... ..... ...
T Consensus 153 ~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
T 1iug_A 153 EGLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCP-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGE 226 (352)
T ss_dssp TCEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCC-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTC
T ss_pred CCEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCC-CceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCC
Confidence 99999999994 65432 222333 3788755 6988876 56899999999876521100 00000 012
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchH
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~ 803 (863)
.+++.++.+++++.++++.+++. .+++.+..+.+++.+.+.+.+. ....+... ..+.++.+.+.+..
T Consensus 227 ~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~~~~~~-------- 293 (352)
T 1iug_A 227 SAWTPAINLVLAVAAVLEEVLPR--LEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFYLPEGV-------- 293 (352)
T ss_dssp CSSCCCHHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEECCTTC--------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEEcCCCC--------
Confidence 24456888899999999987543 3445555555555554444331 22111110 25678888775321
Q ss_pred HHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
...++.+.|.++||++++. .+.+|+.++..++++++++++++|+++++++
T Consensus 294 ~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 294 PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 1467888999999999874 3789999888789999999999999887654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-17 Score=181.44 Aligned_cols=216 Identities=9% Similarity=-0.076 Sum_probs=140.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.+++.+.+ .++++|++.|... |... .+++|.++|++||++||+||+|+ +|+++... ...++
T Consensus 153 ~~l~~~i~~-------~~~~~v~~~~~~~---~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~~ 215 (405)
T 2vi8_A 153 DDVREKARL-------HRPKLIVAAAAAY---PRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPVP 215 (405)
T ss_dssp HHHHHHHHH-------HCCSEEEECCSSC---CSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCSTT
T ss_pred HHHHHHHHh-------cCCeEEEEeCCCC---CccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCccc
Confidence 445666642 1245677765312 3222 28999999999999999999997 66654311 11222
Q ss_pred CCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 681 VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 681 ~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
.+|++ +++|+++|+ .. |++++++++++.+... ...+++++ ++..++++.++++.+++. ..+++.+..+
T Consensus 216 ~~di~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~aa~~~al~~~~~~-~~~~~~~~~~ 286 (405)
T 2vi8_A 216 YAHFVTTTTHKTLRGP-RG-GMILCQEQFAKQIDKA------IFPGIQGGPLMHVIAAKAVAFGEALQD-DFKAYAKRVV 286 (405)
T ss_dssp TCSEEEEESSSTTCCC-SC-EEEEECHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHH
T ss_pred cCCEEEEeccccCCCC-CC-eEEEEcHHHHHHHHhh------hcccccCCCCHHHHHHHHHHHHHHHhh-hHHHHHHHHH
Confidence 58887 789999865 23 8899999998877531 12234444 788888888899877552 2334444444
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----------CCEE
Q 002941 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVI 826 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----------g~~l 826 (863)
.+++.+.+.+.+. ..+.+ ...+.|.++.+.+.... .....+.+.|.++||++++. .+.+
T Consensus 287 ~~~~~l~~~L~~~--g~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~i 356 (405)
T 2vi8_A 287 DNAKRLASALQNE--GFTLV-SGGTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGI 356 (405)
T ss_dssp HHHHHHHHHHHHT--TCEEG-GGSCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEE
T ss_pred HHHHHHHHHHHhC--CCeEe-cCCCCceEEEEEccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCce
Confidence 5555444443332 22111 11245788888886421 01456788889999999873 2679
Q ss_pred EEecCC----CCcHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGP----CSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 827 r~~ppl----~~t~eeid~~v~~L~~~l~~l 853 (863)
|++++. .++++++++++++|+++++++
T Consensus 357 Ris~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 357 RIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred EEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 998776 578999999999999998765
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9e-16 Score=170.10 Aligned_cols=339 Identities=12% Similarity=0.013 Sum_probs=209.8
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||+.++ |+ .+|+|.+|+.+++.+........+. .+...++.++|+++++.+ .+.++|++||++|+
T Consensus 2 ~yld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 73 (382)
T 4eb5_A 2 AYFDYTSA------KP-VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CC-CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHH
T ss_pred eeeccCCC------CC-CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHH
Confidence 47786553 44 6899999999998863211111111 245678999999988743 35899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.+.+ ++... | ..|++...+|++.......+.. .+ .
T Consensus 74 ~~~~~~l~~-~~~~~----g------------d~Vl~~~~~~~~~~~~~~~~~~----~g-----------~-------- 113 (382)
T 4eb5_A 74 NLAIIGYAM-RNARK----G------------KHILVSAVEHMSVINPAKFLQK----QG-----------F-------- 113 (382)
T ss_dssp HHHHHHHHH-HHGGG----C------------CEEEEETTCCHHHHHHHHHHTT----TT-----------C--------
T ss_pred HHHHHHHHh-hccCC----C------------CEEEECCCcchHHHHHHHHHHh----CC-----------c--------
Confidence 999998742 21111 2 5799999988876433322110 00 0
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++....+ ..| .+.+++.+. .++.+|+++.. ++..|
T Consensus 114 ---~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG 152 (382)
T 4eb5_A 114 ---EVEYIPVGKYG---------------------EVD--------VSFIDQKLR--------DDTILVSVQHA-NNEIG 152 (382)
T ss_dssp ---EEEEECBCTTS---------------------CBC--------HHHHHHHCC--------TTEEEEECCSB-CTTTC
T ss_pred ---EEEEeccCCCC---------------------ccC--------HHHHHHHhc--------CCCeEEEEecc-CCCcc
Confidence 00111111000 011 234555553 24678888887 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~ 712 (863)
.+.+ +++|.++|++||++ |+||+|+ +|... +....+ .+|++++ +|.++ ...+|+++++++. .+.
T Consensus 153 ~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g--~~g~G~~~~~~~~--~l~ 218 (382)
T 4eb5_A 153 TIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYG--PKGVGALWIRKEA--KLQ 218 (382)
T ss_dssp BBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTC--CSSCEEEEEETTC--CCC
T ss_pred ccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcC--CCceEEEEEcccc--ccC
Confidence 8876 89999999999999 9999995 65432 222223 4688755 69643 1237888888763 111
Q ss_pred cCCccc-eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc----cceEE
Q 002941 713 GDSKLK-ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA----LGTLC 787 (863)
Q Consensus 713 ~~~~~~-~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg----~Gl~~ 787 (863)
..-... .......++.++.+++++.++++.+++ + .+++.+..+.+++.+. +.+.+.|.+.-+.. .+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-~-~~~~~~~~~~~~~~l~----~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4eb5_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAM-E-WREEAERLRRLRDRII----DNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH----HHHTTSTTEEECSCSSSBCTTEE
T ss_pred ceecCCCccccccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHH----HHHhhCCCeEEeCCcccCCCCEE
Confidence 100000 000112234577788888888887653 2 3444444455555443 33444554432222 25677
Q ss_pred EEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHHHHHH
Q 002941 788 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 788 ~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+.+.... ...+.+.|.++||.+++. .+.+|+.+...++++++++++
T Consensus 293 ~~~~~~~~---------~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~ 363 (382)
T 4eb5_A 293 NVRFSYIE---------GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLL 363 (382)
T ss_dssp EEEETTSC---------HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHH
T ss_pred EEEeCCcC---------HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHH
Confidence 77775221 456888889999999863 368999987788999999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDKV 856 (863)
Q Consensus 844 ~~L~~~l~~l~~~ 856 (863)
++|+++++++.+.
T Consensus 364 ~~l~~~~~~~~~~ 376 (382)
T 4eb5_A 364 EVLPGVIERLRSM 376 (382)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=181.80 Aligned_cols=328 Identities=14% Similarity=0.030 Sum_probs=201.1
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.+.+.+++.+++.+...........+...++.++|+++++.+ .+.+ ++++||++|++.+++..+. .|
T Consensus 19 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l~~---------~g-- 86 (416)
T 3isl_A 19 PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASVIE---------PE-- 86 (416)
T ss_dssp SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHHCC---------TT--
T ss_pred CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHhcC---------CC--
Confidence 334445555555442221111112345778999999988754 2444 4899999999999986521 12
Q ss_pred CCCccccccccEEEEecCCCccCccc-cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~g-als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
.+||+...+||+.... .....|. .+..++.+...
T Consensus 87 ----------d~Vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------- 121 (416)
T 3isl_A 87 ----------DDVLIPIYGRFGYLLTEIAERYGA----------------------------NVHMLECEWGT------- 121 (416)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-------
T ss_pred ----------CEEEEecCCcccHHHHHHHHhcCC----------------------------eeEEEecCCCC-------
Confidence 6799999999984322 1111110 01111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
.-| .+.+++.+.+ +++.+|+++.+ ++..|.+.+ +++|.++|++||+
T Consensus 122 --------------~~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 167 (416)
T 3isl_A 122 --------------VFD--------PEDIIREIKK-------VKPKIVAMVHG-ETSTGRIHP----LKAIGEACRTEDA 167 (416)
T ss_dssp --------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CHHHHHHHHHTTC
T ss_pred --------------CCC--------HHHHHHHHhh-------CCCcEEEEEcc-CCCCceecC----HHHHHHHHHHcCC
Confidence 011 2456666642 23567888886 899998776 8999999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC------------------
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS------------------ 715 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~------------------ 715 (863)
++|+||+|+ +|.. .+..+.+ .+|+++++ |++.|+ .++|++++++++++.+....
T Consensus 168 ~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~g~-~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg 241 (416)
T 3isl_A 168 LFIVDAVAT-IGGC--EVKVDEW--KIDAAIGGTQKCLSVP-SGMAPITYNERVADVIAARKKVERGIATQADRAALSGN 241 (416)
T ss_dssp EEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCCC-SSEEEEEECHHHHHHHHTC------------------C
T ss_pred EEEEECCcc-ccCC--Ccchhhc--CCCEEEecCccccCCC-CCeEEEEECHHHHHHhhccccccccccccccchhccCC
Confidence 999999995 4322 1222222 37888764 998887 68999999999988776310
Q ss_pred -ccce------------eecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-
Q 002941 716 -KLKA------------LLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV- 780 (863)
Q Consensus 716 -~~~~------------~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v- 780 (863)
.... .... ...+.+..+++++.++++.+++.+ .+++.+..+.+++.+.+.+.+. ....+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 318 (416)
T 3isl_A 242 RPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEG-LETRFERHRHHEAALAAGIKAM--GLRLFGDDS 318 (416)
T ss_dssp CCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--TCCBCSCGG
T ss_pred CCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHc--CCEeccCcc
Confidence 0000 0011 123457888888888998775432 2344444445555544444331 22221111
Q ss_pred cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEecCCCCcHHH-HHHHHHHHHHHHHHH
Q 002941 781 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEV-CSQLLLKLYQRLEEF 853 (863)
Q Consensus 781 rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~ppl~~t~ee-id~~v~~L~~~l~~l 853 (863)
...+.++.+.+.+.. ...++.+.|+++ ||.+++. ++.+|+.++...++++ +++++++|+++++++
T Consensus 319 ~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 319 CKMPVVTCVEIPGGI--------DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp GBCTTEEEEECCTTC--------CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCC--------CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 123677878775321 156788889887 9999853 4799999766566655 999999999998865
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-16 Score=181.06 Aligned_cols=330 Identities=13% Similarity=0.016 Sum_probs=200.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCC------CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARFGHVMFPE------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~------~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
.+|++++++.++ +...+... ...+...+++++|+++++.+ ..++|+++|++|+..|++++ +.|...+|
T Consensus 78 ~~p~v~~~~~~~---~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~~~~~~ggt~a~~~al~~~-~~~~~~~G 151 (474)
T 1wyu_B 78 YNPKLHEEAARL---FADLHPYQDPRTAQGALRLMWELGEYLKALTGMD--AITLEPAAGAHGELTGILII-RAYHEDRG 151 (474)
T ss_dssp CCCHHHHHHHHT---TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH-HHHHHHTT
T ss_pred CCHHHHHHHHHH---HHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--ceeecChHHHHHHHHHHHHH-HHHHHhcC
Confidence 579999888876 22221100 01245678899999988743 23568899999999999998 45543344
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
..++ +.+||+.. .+|+....++...|.. +..++....+
T Consensus 152 d~~~-----------r~~Vlv~~-~~h~~~~~~~~~~G~~----------------------------vv~v~~~~~~-- 189 (474)
T 1wyu_B 152 EGRT-----------RRVVLVPD-SAHGSNPATASMAGYQ----------------------------VREIPSGPEG-- 189 (474)
T ss_dssp CTTT-----------CCEEEEET-TSCTHHHHHHHHTTCE----------------------------EEEECBCTTS--
T ss_pred CccC-----------CCEEEEeC-CcChhhHHHHHHCCCE----------------------------EEEecCCCCC--
Confidence 2012 25677765 7888877665442210 1111111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
.-| .+.+++.+. +++++|+++.. +..|.+. +.+++|.++|
T Consensus 190 -------------------~~d--------~~~L~~~i~--------~~t~~v~~~~p--n~~G~~~---~~l~~i~~l~ 229 (474)
T 1wyu_B 190 -------------------EVD--------LEALKRELG--------PHVAALMLTNP--NTLGLFE---RRILEISRLC 229 (474)
T ss_dssp -------------------SBC--------HHHHHHHCS--------TTEEEEEECSS--CTTSCCC---TTHHHHHHHH
T ss_pred -------------------CcC--------HHHHHHhhC--------CCceEEEEECC--CCCcccC---CCHHHHHHHH
Confidence 011 244555553 35788888873 4577662 2389999999
Q ss_pred HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCC----CCCceeeeccHHHHHhhhcC-----Cccce
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG----VIPLAATLATNAVFDSFVGD-----SKLKA 719 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG----~~Pigav~~~~~i~~~l~~~-----~~~~~ 719 (863)
++||+++|+||++. .+.+|.. ....+| +|++++ +|.+++. -.++|++++++++++.+... +....
T Consensus 230 ~~~g~~li~Dea~~-~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~ 305 (474)
T 1wyu_B 230 KEAGVQLYYDGANL-NAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFY 305 (474)
T ss_dssp HHHTCEEEEEGGGG-GGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEE
T ss_pred HHcCCEEEEeCchh-hhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeE
Confidence 99999999999995 3344432 122233 899988 8988532 15899999999988776420 00000
Q ss_pred e--------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE--EEE
Q 002941 720 L--------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL--CAI 789 (863)
Q Consensus 720 ~--------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~--~~i 789 (863)
+ ....++.+|+++++++.+.++.+..+. ++++.+.....++++.+.+.+. ....+ .+.+.+ +.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~-l~~~~~~~~~~~~~l~~~L~~~--g~~~~---~~~~~~~~~~~ 379 (474)
T 1wyu_B 306 LDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG-LKKAAALAVLNARYLKELLKEK--GYRVP---YDGPSMHEFVA 379 (474)
T ss_dssp EECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT--TCBCS---SCSSCCSCEEE
T ss_pred ecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc--CcEec---CCCCcceEEEE
Confidence 0 011345688999999999888653333 3333444444445444444332 22211 111122 233
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEe------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+... .....+.+.|.++||++.. .++.+|+.++..+|++++++++++|++++++
T Consensus 380 ~~~~~--------~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 380 QPPEG--------FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp BCSTT--------CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EcCCC--------CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 33111 1256788999999998632 1478999988888999999999999988765
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=178.09 Aligned_cols=320 Identities=13% Similarity=0.026 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHHH-hcccccC-C-----CCCChHHHHHH-HHHHhhcCCCCCCeE-EEeCChhhHHHHHHHHHHHHHHhh
Q 002941 418 QIELARDMGYTAA-RFGHVMF-P-----ENVYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFD 488 (863)
Q Consensus 418 ~p~V~~Ai~~q~~-~~~~~~~-~-----~~~~~~~~eLa-e~L~~~~p~~~~~~v-~f~~SGSeAvE~ALklA~r~~~~~ 488 (863)
+|+|++|+.+++. .+.+... . ....+...+++ +++++.++. +.+ ++++||++|++.|++.+++
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~v~~~~Gs~a~~~al~~~~~----- 116 (425)
T 3ecd_A 45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA---GHANVQPHSGAQANGAVMLALAK----- 116 (425)
T ss_dssp CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC---CCceeecCchHHHHHHHHHHccC-----
Confidence 6999999999984 4322210 0 01123556666 677777773 455 4599999999999987621
Q ss_pred ccccccccCCCccccccccEEEEecCCCccC-ccccce-ecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGD-TLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 489 ~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~-t~gals-~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
.| .+||+...+||+. +.+... ..+. .+ ..+++|.
T Consensus 117 ----~g------------d~Vi~~~~~~~~~~~~~~~~~~~g~-~~---------------------------~~~~~~~ 152 (425)
T 3ecd_A 117 ----PG------------DTVLGMSLDAGGHLTHGAKPALSGK-WF---------------------------NALQYGV 152 (425)
T ss_dssp ----TT------------CEEEEECC-------------------C---------------------------EEEEECC
T ss_pred ----CC------------CEEEEcccccccceecchhhhhccc-ce---------------------------eeeecCC
Confidence 12 5799999999883 222211 1110 00 0011110
Q ss_pred hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeCCHHHHHH
Q 002941 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fL~~ 645 (863)
.. +.+ .-| .+.+++.+.+ .++.+|+++ |. + |. ...+++
T Consensus 153 ~~----------------~~~--~~d--------~~~l~~~i~~-------~~~~~v~~~~~~-~---~~----~~~l~~ 191 (425)
T 3ecd_A 153 SR----------------DTM--LID--------YDQVEALAQQ-------HKPSLIIAGFSA-Y---PR----KLDFAR 191 (425)
T ss_dssp CT----------------TTS--SCC--------HHHHHHHHHH-------HCCSEEEEECSC-C---CS----CCCHHH
T ss_pred Cc----------------ccC--ccC--------HHHHHHHHhh-------cCCcEEEEcccc-C---CC----cCCHHH
Confidence 00 000 011 2456666642 134577777 64 4 22 234799
Q ss_pred HHHHHHHcCCeEEEeccc-ccccccCCcchhhhcCCCCcEEE--eccccCCCCCCceeeecc-HHHHHhhhcCCccceee
Q 002941 646 LVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLAT-NAVFDSFVGDSKLKALL 721 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~~Pigav~~~-~~i~~~l~~~~~~~~~~ 721 (863)
|+++|++||++||+||+| +|+.+.|..+.... .+|+++ ++|+++| ..+|+++++ +++.+.+... ..
T Consensus 192 i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~---~~di~~~s~sK~l~g--~~~g~~~~~~~~~~~~~~~~-----~~ 261 (425)
T 3ecd_A 192 FRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE---HAHVVTSTTHKTLRG--PRGGFVLTNDEEIAKKINSA-----VF 261 (425)
T ss_dssp HHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHH-----HC
T ss_pred HHHHHHHcCCEEEEECcChHhhhhcccccCchh---cCcEEEecCCcccCC--CCcEEEEeCCHHHHHHHHhh-----hC
Confidence 999999999999999995 56655555433211 268875 5699955 467888887 5777766531 11
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--cccceEEEEEEccCCcCCC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNAG 799 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v--rg~Gl~~~iel~~~~~~~~ 799 (863)
++.+.+.++..++++.+++..+.+++ .+.+.++.+.+.+.+.+.+.+ .+. .-+ .+.+.++.+.+....
T Consensus 262 ~~~~~~~~~~~~~a~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~----~g~-~~~~~~~~~~~~~~~~~~~~---- 331 (425)
T 3ecd_A 262 PGLQGGPLMHVIAGKAVAFGEALTDD-FKTYIDRVLANAQALGDVLKA----GGV-DLVTGGTDNHLLLVDLRPKG---- 331 (425)
T ss_dssp -----CCCHHHHHHHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHHH----TTC-EEGGGSCSSSEEEEECGGGT----
T ss_pred ccccCCccHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHh----CCC-eeccCCCCceEEEEEeCCCC----
Confidence 22222334434443443443332222 223333333344433333322 221 112 145678888776421
Q ss_pred CchHHHHHHHHHHHHCCcEEE----ec-------CCEEEEecCCCCc----HHHHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMR----PL-------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~----p~-------g~~lr~~ppl~~t----~eeid~~v~~L~~~l~~l 853 (863)
.....+.+.|.++||+++ |. .+.+|+.++..++ ++++++++++|++++++.
T Consensus 332 ---~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 332 ---LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp ---CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 014567788889999998 32 1579998665544 999999999999999876
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=180.06 Aligned_cols=212 Identities=10% Similarity=-0.006 Sum_probs=125.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccc-ccccccCCcchhhhcC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLG 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~g 679 (863)
+.+++.+.+ .++++|++ +|. ++ ...+ +++|+++|++||++||+||+| .|+.+.|...... .
T Consensus 159 ~~l~~~i~~-------~~~~~v~~~~~~-~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~--~ 221 (420)
T 3gbx_A 159 DEMAKLAKE-------HKPKMIIGGFSA-YS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV--P 221 (420)
T ss_dssp HHHHHHHHH-------HCCSEEEECCTT-CC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST--T
T ss_pred HHHHHHHHh-------cCCeEEEEecCc-cC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCccc--c
Confidence 456666653 23556677 564 32 2333 899999999999999999997 4665555433221 1
Q ss_pred CCCcEEE--eccccCCCCCCceeeeccH---HHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 680 CVPDIAC--YGKLLTGGVIPLAATLATN---AVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 680 v~PDivt--~sKgLggG~~Pigav~~~~---~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
.+|+++ ++|+++| ...|++++++ ++++.+... .+.+++++ +...++++.+++..+.+++ .+++.
T Consensus 222 -~~di~~~s~sK~~~g--~~gg~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~a~~~~~~~~-~~~~~ 291 (420)
T 3gbx_A 222 -HAHVVTTTTHKTLAG--PRGGLILAKGGDEELYKKLNSA------VFPSAQGGPLMHVIAGKAVALKEAMEPE-FKVYQ 291 (420)
T ss_dssp -TSSEEEEESSGGGCS--CSCEEEEESSCCHHHHHHHHHH------HC----CCCCHHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred -cCCEEEeecccCCCC--CCceEEEEcCCcHHHHHHhhhh------cCCCCCCCcchhHHHHHHHHHHHHHhHh-HHHHH
Confidence 389987 6699974 3457788887 777776531 12222333 2333333333444332322 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-------c--
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------L-- 822 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p-------~-- 822 (863)
+.....++.+.+.+.+ .+ +.-+. ..+.++.+.+.... .....+.+.|.++||++.+ .
T Consensus 292 ~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~ 359 (420)
T 3gbx_A 292 QQVAKNAKAMVEVFLN----RG-YKVVSGGTENHLFLLDLVDKN-------LTGKEADAALGRANITVNKNSVPNDPKSP 359 (420)
T ss_dssp HHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHh----cC-CeeccCCCCCeEEEEEcCCCC-------CCHHHHHHHHHHCCcEeccccCCCCcccc
Confidence 3333334433333322 22 22222 35677777775421 0145677788899999987 1
Q ss_pred --CCEEEEecCCC----CcHHHHHHHHHHHHHHHHH
Q 002941 823 --GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 823 --g~~lr~~ppl~----~t~eeid~~v~~L~~~l~~ 852 (863)
.+.+|+.++.. ++++++++++++|++++++
T Consensus 360 ~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 360 FVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 25699988765 4589999999999999865
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=184.76 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=158.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|++++++++ + .| .+||+....|||
T Consensus 63 r~~~p~~~~l~~~la~l~g~---~~~~~~~sG~~Ai~~~~~l~-~---------~g------------d~Vi~~~~~y~~ 117 (400)
T 3nmy_A 63 RTHNPTRFAYERCVAALEGG---TRAFAFASGMAATSTVMELL-D---------AG------------SHVVAMDDLYGG 117 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS-C---------TT------------CEEEEESSCCHH
T ss_pred cCCCHHHHHHHHHHHHHhCC---CCEEEecCHHHHHHHHHHHc-C---------CC------------CEEEEeCCCchH
Confidence 45688899999999999873 58999999999999854433 1 12 579999999987
Q ss_pred Ccccccee-cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHH
Q 002941 519 DTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (863)
Q Consensus 519 ~t~gals~-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 597 (863)
........ .. .. |+....+|. +|
T Consensus 118 ~~~~~~~~~~~--------------~~-------------g~~~~~v~~------------------------~d----- 141 (400)
T 3nmy_A 118 TFRLFERVRRR--------------TA-------------GLDFSFVDL------------------------TD----- 141 (400)
T ss_dssp HHHHHHHTHHH--------------HH-------------CCEEEEECT------------------------TS-----
T ss_pred HHHHHHHhhHh--------------hc-------------CeEEEEECC------------------------CC-----
Confidence 54332211 00 00 000011110 11
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhh
Q 002941 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (863)
Q Consensus 598 ~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (863)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|+++|++||++||+||+++. +... ....
T Consensus 142 ---~~~l~~~i~--------~~~~~v~~e~~-~np~G~~~~----l~~i~~la~~~g~~livDe~~~~-~~~~---~~~~ 201 (400)
T 3nmy_A 142 ---PAAFKAAIR--------ADTKMVWIETP-TNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS-PMLQ---RPLS 201 (400)
T ss_dssp ---HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH-HHHC---CGGG
T ss_pred ---HHHHHHHhc--------cCCCEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc-cccC---Chhh
Confidence 244555553 36789999997 999998876 99999999999999999999952 1222 2222
Q ss_pred cCCCCcEEEeccccCCCCCCcee--ee-ccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 678 LGCVPDIACYGKLLTGGVIPLAA--TL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 678 ~gv~PDivt~sKgLggG~~Piga--v~-~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+|..+.+.+++|.++|+..++|+ ++ .++++++.+.. +.+..++..+|+.++.++..++.+.. ..++..+
T Consensus 202 ~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~------~~~~~g~~~~~~~a~~~l~~l~~l~~--r~~~~~~ 273 (400)
T 3nmy_A 202 LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF------LQNSIGGVQGPFDSFLALRGLKTLPL--RMRAHCE 273 (400)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH------HHHHHCCBCCHHHHHHHHHHHTTHHH--HHHHHHH
T ss_pred cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH------HHHhcCCCCCHHHHHHHHHhHhHHHH--HHHHHHH
Confidence 34333344589999976567655 33 47788877653 12445667899999988888876531 2344444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEcc
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
+++++. +.++++|.|..| +|.|.|+++++..
T Consensus 274 ~a~~l~--------~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~ 322 (400)
T 3nmy_A 274 NALALA--------QWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG 322 (400)
T ss_dssp HHHHHH--------HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred HHHHHH--------HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC
Confidence 444443 345678888877 8899999999964
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=176.61 Aligned_cols=326 Identities=12% Similarity=0.048 Sum_probs=204.1
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCC-eEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~-~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
-+|++.+|+.+++.. + ...+..+...+|.++|+++++.+ .+ .+++++||++|++.+++.+++ .|
T Consensus 29 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~al~~~~~~~~~---------~g- 93 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--N--FHAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLLE---------EG- 93 (396)
T ss_dssp CCHHHHHHTTSCCCC--T--TCHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCC---------TT-
T ss_pred CCHHHHHHhcccccc--C--CChhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHhcC---------CC-
Confidence 368888877665421 1 00011234778999999998754 34 799999999999999987621 12
Q ss_pred cCCCccccccccEEEEecCCCccCcc-ccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~-gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
.+|++...+||+... ......|. .+..++.+..+
T Consensus 94 -----------d~vl~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~------ 128 (396)
T 2ch1_A 94 -----------DRVLIAVNGIWAERAVEMSERYGA----------------------------DVRTIEGPPDR------ 128 (396)
T ss_dssp -----------CEEEEEESSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTS------
T ss_pred -----------CeEEEEcCCcccHHHHHHHHHcCC----------------------------ceEEecCCCCC------
Confidence 579999999998531 11111110 01111111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
..| .+.+++.+.+ .++.+|+++.. ++..|.+.+ +++|.++|++||
T Consensus 129 ---------------~~d--------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~ 173 (396)
T 2ch1_A 129 ---------------PFS--------LETLARAIEL-------HQPKCLFLTHG-DSSSGLLQP----LEGVGQICHQHD 173 (396)
T ss_dssp ---------------CCC--------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTT
T ss_pred ---------------CCC--------HHHHHHHHHh-------CCCCEEEEECC-CCCCceecC----HHHHHHHHHHcC
Confidence 011 2445566642 13456777776 888998876 889999999999
Q ss_pred CeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCC-ccceee----------
Q 002941 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS-KLKALL---------- 721 (863)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~-~~~~~~---------- 721 (863)
+++|+||+++ +|... ...+.+ .+|++++| |.++++ ..+|++++++++++.+.... +...+.
T Consensus 174 ~~li~Dea~~-~g~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (396)
T 2ch1_A 174 CLLIVDAVAS-LCGVP--FYMDKW--EIDAVYTGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYW 247 (396)
T ss_dssp CEEEEECTTT-BTTBC--CCTTTT--TCCEEECCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHT
T ss_pred CEEEEEcccc-ccCCc--cchhhc--CcCEEEEcCCccccCC-CCeEEEEECHHHHHhhhhccCcccceEechHHHHHhh
Confidence 9999999995 65432 222222 47998876 999887 67899999999888775311 000000
Q ss_pred ------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEcc
Q 002941 722 ------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQA 793 (863)
Q Consensus 722 ------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~ 793 (863)
....++.+..+++++.++|+.+.++ ..+++.+..+..++.+.+.+.+. ....+.... ..+.++.+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~ 324 (396)
T 2ch1_A 248 GCYDEPKRYHHTVASNLIFALREALAQIAEE-GLENQIKRRIECAQILYEGLGKM--GLDIFVKDPRHRLPTVTGIMIPK 324 (396)
T ss_dssp TCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSGGGBCTTEEEEECCT
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCccccCCceEEEEcCC
Confidence 1122345777888889999876432 23344444555555554454433 232221111 234577777642
Q ss_pred CCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEec-CCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.. ...++.+.|+++ ||++++. ++.+|+.+ ++.++++++++++++|+++++++.
T Consensus 325 ~~--------~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 325 GV--------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp TC--------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CC--------CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 11 155788888875 9999873 47899987 567799999999999999987764
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=169.62 Aligned_cols=340 Identities=13% Similarity=0.037 Sum_probs=202.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
..+|+..+. ..++ .+|.+.+|+.++++.... +....+..+...++++.+....+.. ..+.++++++|++|++.+
T Consensus 32 ~~i~l~~~~--~~~~--~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~ 107 (385)
T 1b5p_A 32 DLVALTAGE--PDFD--TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (385)
T ss_dssp CCEECCCSS--CSSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEecCCC--CCCC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHH
Confidence 455655442 2344 368999999988865211 1111122344555666665443321 136899999999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++..++ .| .+|++...+|++....+... |.
T Consensus 108 ~~~l~~---------~g------------d~Vlv~~p~y~~~~~~~~~~-g~---------------------------- 137 (385)
T 1b5p_A 108 FQAILD---------PG------------DEVIVLSPYWVSYPEMVRFA-GG---------------------------- 137 (385)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTHHHHHHHHT-TC----------------------------
T ss_pred HHHhcC---------CC------------CEEEEcCCCchhHHHHHHHc-CC----------------------------
Confidence 986621 12 57999999998754322111 10
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
.+..++.... ..+ .-| .+.+++.+. +...+.+++.| ++..|.+
T Consensus 138 ~~~~v~~~~~-----------------~~~--~~d--------~~~l~~~l~-------~~~~~v~~~~p--~NPtG~~- 180 (385)
T 1b5p_A 138 VVVEVETLPE-----------------EGF--VPD--------PERVRRAIT-------PRTKALVVNSP--NNPTGAV- 180 (385)
T ss_dssp EEEEEECCGG-----------------GTT--CCC--------HHHHHTTCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred EEEEeecCcc-----------------cCC--CCC--------HHHHHHhcC-------CCCEEEEEeCC--CCCCCCC-
Confidence 0011111100 000 011 133433332 22234455677 6778854
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-CCCCCceeeeccHHHHHhhhcC
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-gG~~Pigav~~~~~i~~~l~~~ 714 (863)
.+++.+++|.++|++||+++|+||++..|...|.......+.-..+++ +|||.++ .| +++|++++++++++.+...
T Consensus 181 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~ 259 (385)
T 1b5p_A 181 YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASV 259 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHH
Confidence 478899999999999999999999998775444222222221112332 7899997 67 8999999999998887641
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEc
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQ 792 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~ 792 (863)
....+++.++++.+++.++|+..+ ..++.+++.+..+..++.+.+.+.+. .... .... |.++.+.+.
T Consensus 260 ------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~~ 328 (385)
T 1b5p_A 260 ------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLKA---VRPSGAFYVLMDTS 328 (385)
T ss_dssp ------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCB---CCCSBTTEEEEECT
T ss_pred ------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCee---cCCCeeEEEEEecC
Confidence 233567788899998888886300 12334555555555566555554432 2221 1223 445555554
Q ss_pred cCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
... ....++.+.|.++||++.++ .+.+|+.. .++++++++++++|.++++
T Consensus 329 ~~~-------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~--~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 329 PIA-------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVLG 383 (385)
T ss_dssp TTC-------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC-
T ss_pred CCC-------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 211 01456888888999999874 26899874 4788999999988877654
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=181.20 Aligned_cols=305 Identities=11% Similarity=0.108 Sum_probs=184.9
Q ss_pred HHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCc
Q 002941 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (863)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~ 500 (863)
+.+++.+.+....+ +..+...+|.++|+++++. +.++|++||++|++.+++.+ + . . +|
T Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~~~~~-~-~----~--~g------ 78 (374)
T 3uwc_A 21 YLNDLREFIKTADF-----TLGAELEKFEKRFAALHNA---PHAIGVGTGTDALAMSFKML-N-I----G--AG------ 78 (374)
T ss_dssp HHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT------
T ss_pred HHHHHHHHHHcCCc-----ccChhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C----C--CC------
Confidence 56666665554322 3467789999999999984 58999999999999999876 1 0 0 12
Q ss_pred cccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccccc
Q 002941 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (863)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (863)
.+|++...+||+........ |.. +..++....+
T Consensus 79 ------d~v~~~~~~~~~~~~~~~~~-g~~----------------------------~~~~~~~~~~------------ 111 (374)
T 3uwc_A 79 ------DEVITCANTFIASVGAIVQA-GAT----------------------------PVLVDSENGY------------ 111 (374)
T ss_dssp ------CEEEEESSSCHHHHHHHHHT-TCE----------------------------EEEECBCTTS------------
T ss_pred ------CEEEECCCccHHHHHHHHHc-CCE----------------------------EEEEecCCCC------------
Confidence 57999999998865433221 100 0011111000
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe
Q 002941 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (863)
Q Consensus 581 ~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D 660 (863)
.-| .+.+++.+. .++.+|+ | .+..|...+ +++|.++|++||+++|+|
T Consensus 112 ---------~~d--------~~~l~~~~~--------~~~~~v~--~--~n~~G~~~~----~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 112 ---------VID--------PEKIEAAIT--------DKTKAIM--P--VHYTGNIAD----MPALAKIAKKHNLHIVED 158 (374)
T ss_dssp ---------SBC--------GGGTGGGCC--------TTEEEEC--C--BCGGGCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred ---------CcC--------HHHHHHhCC--------CCceEEE--E--eCCcCCcCC----HHHHHHHHHHcCCEEEEe
Confidence 001 012222221 2456666 5 356676654 999999999999999999
Q ss_pred cccccccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeecc-HHHHHhhhc---CCccc---eeecccCCCc
Q 002941 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFVG---DSKLK---ALLHGHSYSA 728 (863)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~~-~~i~~~l~~---~~~~~---~~~~~~T~~~ 728 (863)
|+|+.+ ..+..+..+..+|++++| |++++ |. .|+++++ +++++.+.. ..... ....+.++..
T Consensus 159 ~~~~~g----~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (374)
T 3uwc_A 159 ACQTIL----GRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRM 232 (374)
T ss_dssp CTTCTT----CEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBC
T ss_pred CCCccC----ceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCC
Confidence 999632 224445566668999888 99988 73 7777764 466555432 11000 0112445566
Q ss_pred cHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-eeEe---c-ccceEEEEEEccCCcCCCCchH
Q 002941 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRV---V-ALGTLCAIELQAAGCNAGYGSL 803 (863)
Q Consensus 729 ~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~~v---r-g~Gl~~~iel~~~~~~~~~~~~ 803 (863)
+++.++++++.++.++ ++.++..++.+++.+ .+.+.+. +.-. . +...++.+.+....
T Consensus 233 ~~~~aa~~~~~~~~~~--~~~~~~~~~~~~l~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 294 (374)
T 3uwc_A 233 DTIQAVIANRLMNQLE--TITEKRRGIAHLYDQ--------SFVDLSEFIDVPVRREGVYHVFHIYVLRVKY-------- 294 (374)
T ss_dssp CHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHH--------HTGGGTTTEECCCCCTTEECCCSSEEEEETT--------
T ss_pred CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------HhccCCCeEEeccCCCCCceeeEEEEEEcCC--------
Confidence 8888888777665442 233344443333333 2333332 2111 1 11111112222111
Q ss_pred HHHHHHHHHHHCCcEEEecC----------------------------CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 804 YAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 804 ~~~~l~~~l~e~GV~~~p~g----------------------------~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
...+.+.|.++||.+++.. +.+|+.+...+|++||++++++|++++++
T Consensus 295 -~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 295 -RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp -HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999987653 68899888889999999999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-15 Score=165.11 Aligned_cols=312 Identities=13% Similarity=0.100 Sum_probs=199.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++. +++| -+|.+.+|+.++++.+. .++++...+|.++|+++++.. .+.++|++++++++..+++
T Consensus 17 ~~i~l~~n~--~~~~--~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 17 QAVCLAFNE--NPEA--VEPRVQAAIAAAAARIN-----RYPFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCEECSSCC--CCSC--CCHHHHHHHHHHGGGTT-----SCCTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred CceEeeCCC--CCCC--CCHHHHHHHHHhhhhhc-----cCCCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHH
Confidence 788888743 5677 47999999999877543 234567788999999988743 3689999999999998887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. . | .+|++...+|++....+... |. .+
T Consensus 87 ~~-~----------g------------d~vl~~~p~~~~~~~~~~~~-g~----------------------------~~ 114 (337)
T 3p1t_A 87 EF-S----------S------------MRFVTAWPGFDGYRARIAVS-GL----------------------------RH 114 (337)
T ss_dssp HS-T----------T------------SEEEEESSSCSHHHHHHTTS-CC----------------------------EE
T ss_pred hc-C----------C------------CeEEEeCCCcHHHHHHHHHc-CC----------------------------EE
Confidence 54 1 2 56999999998864332211 10 00
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++....+ .-| .+ .+++. .+..+.++..| ++..|.+.+
T Consensus 115 ~~v~~~~~~---------------------~~d--------~~----~l~~~-----~~~~~v~i~~p--~nptG~~~~- 153 (337)
T 3p1t_A 115 FEIGLTDDL---------------------LLD--------PN----DLAQV-----SRDDCVVLANP--SNPTGQALS- 153 (337)
T ss_dssp EEECBCTTS---------------------SBC--------HH----HHTTC-----CTTEEEEEESS--CTTTCCCCC-
T ss_pred EEecCCCCC---------------------CCC--------HH----HHHhh-----cCCCEEEEeCC--CCCCCCCCC-
Confidence 111111000 011 12 23321 22334445555 788998887
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHHHHHhhhcCCccc
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLK 718 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~ 718 (863)
.+++.++|+++++ +|+||++.+|+..+.... ...+..-.+.+++|.++ .| +++|++++++++++.+..
T Consensus 154 ---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~l~~----- 222 (337)
T 3p1t_A 154 ---AGELDQLRQRAGK-LLIDETYVDYSSFRARGL-AYGENELVFRSFSKSYGLAG-LRLGALFGPSELIAAMKR----- 222 (337)
T ss_dssp ---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCC-CCBTTEEEEEESSSTTCCTT-TCCEEEECCHHHHHHHHT-----
T ss_pred ---HHHHHHHHHhCCc-EEEECCChhhcccccccc-ccCCCEEEEeeCchhccCcc-hheEEEEeCHHHHHHHHh-----
Confidence 6678899999997 566999998865543211 11111112337899997 78 899999999999998865
Q ss_pred eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC
Q 002941 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798 (863)
Q Consensus 719 ~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~ 798 (863)
...+++.++++++++.++|+. .+..++..+.....++.+.+ .+.+++ +......|.++.+.+.+
T Consensus 223 ---~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~----~L~~~g-~~~~~~~~~~~~~~~~~----- 286 (337)
T 3p1t_A 223 ---KQWFCNVGTLDLHALEAALDN---DRAREAHIAKTLAQRRRVAD----ALRGLG-YRVASSEANFVLVENAA----- 286 (337)
T ss_dssp ---TSCTTCSCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHH----HHHHTT-CCBCCCSSSEEEEECTT-----
T ss_pred ---hcCCCCCCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHH----HHHHCc-CEECCCCCeEEEEEcCC-----
Confidence 234567788888888887763 22222222223333443333 333332 23345667777776542
Q ss_pred CCchHHHHHHHHHHHHCCcEEEecC-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 799 GYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 799 ~~~~~~~~~l~~~l~e~GV~~~p~g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
...+.+.|.++||++++.. +.+|++. .+++++++++++|++.+
T Consensus 287 ------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~---~~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 287 ------GERTLRFLRERGIQVKDAGQFGLHHHIRISI---GREEDNDRLLAALAEYS 334 (337)
T ss_dssp ------THHHHHHHHHTTEECEEGGGGTCCSEEEEEC---CCHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHCCeEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHh
Confidence 2356778889999999853 7899973 37999999999988764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=182.65 Aligned_cols=322 Identities=11% Similarity=0.019 Sum_probs=184.8
Q ss_pred CcHHHHHHHHHHHH-hcccccCC-CC--CC---hHHHHHH-HHHHhhcCCCCCCeEEE-eCChhhHHHHHHHHHHHHHHh
Q 002941 417 LQIELARDMGYTAA-RFGHVMFP-EN--VY---EPALECA-ELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSF 487 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~-~~~~~~~~-~~--~~---~~~~eLa-e~L~~~~p~~~~~~v~f-~~SGSeAvE~ALklA~r~~~~ 487 (863)
.+|+|++|+.+++. ++.+.... .+ .. +...+++ ++++++++. +.+.+ ++||++|++.|++.+++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~---~~~~v~~~sGs~a~~~a~~~~~~---- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA---EFANVQPHSGAQANAAVLHALMS---- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC---CceEEEeCCHHHHHHHHHHHhcC----
Confidence 36999999999885 44332100 00 11 2335677 899998874 45666 99999999999987721
Q ss_pred hccccccccCCCccccccccEEEEecCCCccCc-ccc-ceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc
Q 002941 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (863)
Q Consensus 488 ~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t-~ga-ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (863)
.| .+|++...+|++.. .+. +...+. .+ ..+++|
T Consensus 130 -----~G------------d~Vl~~~~~~~~~~~~~~~~~~~g~-~~---------------------------~~~~~~ 164 (447)
T 3h7f_A 130 -----PG------------ERLLGLDLANGGHLTHGMRLNFSGK-LY---------------------------ENGFYG 164 (447)
T ss_dssp -----TT------------CEEEEECGGGTCCGGGTCTTSHHHH-SS---------------------------EEEEEC
T ss_pred -----CC------------CEEEecCcccccccchhhhhhhcCC-ee---------------------------EEEEcC
Confidence 12 57999988887732 221 111110 00 001111
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQR 644 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fL~ 644 (863)
... + +...| .+.+++.+.. .+..+|++ .|. .+.++ +++
T Consensus 165 ~~~----------------~--~~~~d--------~~~l~~~i~~-------~~~~~i~~~~~~-~~~~~-------~l~ 203 (447)
T 3h7f_A 165 VDP----------------A--THLID--------MDAVRATALE-------FRPKVIIAGWSA-YPRVL-------DFA 203 (447)
T ss_dssp CCT----------------T--TCSCC--------HHHHHHHHHH-------HCCSEEEEECSS-CCSCC-------CHH
T ss_pred cCc----------------c--cCCcC--------HHHHHHHHHh-------cCCeEEEEcCCC-CCCcc-------CHH
Confidence 000 0 00011 2445566642 11224555 675 44332 589
Q ss_pred HHHHHHHHcCCeEEEeccc-ccccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceee
Q 002941 645 ILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL 721 (863)
Q Consensus 645 ~Lrelc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~ 721 (863)
+|+++|++||++||+||+| +|+...|...... . ..|++ +++|+++ | .+.|++++++++++.+... .
T Consensus 204 ~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~-~~di~~~s~sK~l~-G-~~gG~i~~~~~~~~~l~~~------~ 272 (447)
T 3h7f_A 204 AFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P-HADVVSTTVHKTLG-G-GRSGLIVGKQQYAKAINSA------V 272 (447)
T ss_dssp HHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T-TCSEEEEESSGGGC-C-CSCEEEEECGGGHHHHHHH------H
T ss_pred HHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C-CCcEEEecCCcCCC-C-CCeEEEEECHHHHHHHhhh------c
Confidence 9999999999999999997 5665555432211 1 24776 5699996 4 6788889999888877641 1
Q ss_pred cccCCCc-cHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCC
Q 002941 722 HGHSYSA-HALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAG 795 (863)
Q Consensus 722 ~~~T~~~-~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~ 795 (863)
+.+++++ ++..++++.+++..+.+++ +.+++.++.+++.+.|.+ .+...+.+..+. ..+.++.+++....
T Consensus 273 ~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T 3h7f_A 273 FPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA----PDVAKAGVSVVSGGTDVHLVLVDLRDSP 348 (447)
T ss_dssp TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS----HHHHHTTCEEGGGSCSSSEEEEECTTSS
T ss_pred CCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh----ccccCCCeEEecCCCCCCEEEEEcCCCC
Confidence 2233433 3334555555666554433 445555555555554322 211112222222 23456667665321
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEE----ec-------CCEEEEecCCC----CcHHHHHHHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMR----PL-------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~----p~-------g~~lr~~ppl~----~t~eeid~~v~~L~~~l~~l 853 (863)
. ....+...|.++||++. |. .+.+|+.+|.. ++++|+++++++|++++++.
T Consensus 349 ----~---~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 349 ----L---DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp ----C---CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred ----C---CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 0 13445566677899987 32 26788877665 67999999999999998754
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-16 Score=176.34 Aligned_cols=343 Identities=10% Similarity=0.000 Sum_probs=199.9
Q ss_pred eEEeeecccccccCCC-CCcHHHHHHHHH-HHHhcccccCCCC-CChHHHHHHHHHHhhcCCC-----CCCeEEE--eCC
Q 002941 400 QQFDACASWWTQGPDA-TLQIELARDMGY-TAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDN 469 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh-~~~p~V~~Ai~~-q~~~~~~~~~~~~-~~~~~~eLae~L~~~~p~~-----~~~~v~f--~~S 469 (863)
.++|+.+|.....-|+ .-.|.|.+|+.+ +++.... ..+ ......+|.+.+++++... ..++++| +++
T Consensus 30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYN---HEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCC---CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccc---cCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 6788888765333332 135889999988 7752111 111 1222345555555544210 0258999 999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccC
Q 002941 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (863)
Q Consensus 470 GSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~ 549 (863)
|++|++.+++++ +.+. . | .+|++...+||+....+...+. .
T Consensus 107 ~~~a~~~~~~~~-~~~~--~----g------------d~Vl~~~p~~~~~~~~~~~~g~-~------------------- 147 (412)
T 1yaa_A 107 GTGALHISAKFF-SKFF--P----D------------KLVYLSKPTWANHMAIFENQGL-K------------------- 147 (412)
T ss_dssp HHHHHHHHHHHH-HHHC--T----T------------CCEEEEESCCTTHHHHHHTTTC-C-------------------
T ss_pred hHhHHHHHHHHH-HHhC--C----C------------CEEEEeCCCCccHHHHHHHcCc-e-------------------
Confidence 999999998876 3331 1 2 4699999999996543322110 0
Q ss_pred CCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-Eccc
Q 002941 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPV 628 (863)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPV 628 (863)
+..++..+.. +...| .+.+++.+.+ ++....+++ ..|
T Consensus 148 ---------~~~v~~~~~~-------------------~~~~d--------~~~l~~~l~~-----~~~~~~~~~~~~p- 185 (412)
T 1yaa_A 148 ---------TATYPYWANE-------------------TKSLD--------LNGFLNAIQK-----APEGSIFVLHSCA- 185 (412)
T ss_dssp ---------EEEEECEETT-------------------TTEEC--------HHHHHHHHHH-----SCTTCEEEEECSS-
T ss_pred ---------EEEEeeecCC-------------------CCccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-
Confidence 0111110000 00011 2455666643 122234444 445
Q ss_pred cccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC---Ccchhhhc-CCCC---c---EEEeccccCC-CCCC
Q 002941 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLL-GCVP---D---IACYGKLLTG-GVIP 697 (863)
Q Consensus 629 iqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG---~~~a~e~~-gv~P---D---ivt~sKgLgg-G~~P 697 (863)
++..|. +.+.+.+++|.++|++||+++|+||++++|+..| .......+ +..+ + +.+++|.++. | ++
T Consensus 186 -~nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr 262 (412)
T 1yaa_A 186 -HNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ER 262 (412)
T ss_dssp -CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GC
T ss_pred -CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-Cc
Confidence 788885 5578899999999999999999999999986654 22233221 1233 2 3378999987 8 89
Q ss_pred ceeee--c-----cHH----HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--C--hhhHHhHHHHHHHHHHH
Q 002941 698 LAATL--A-----TNA----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--D--PQTNHNIIPERRILREL 762 (863)
Q Consensus 698 igav~--~-----~~~----i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~--~~l~~~l~~~~~~l~~~ 762 (863)
+|+++ + +++ +++.+.. .....+.+.++++++++.++|+... + ++..+++++..+..++.
T Consensus 263 iG~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (412)
T 1yaa_A 263 VGCFHLALTKQAQNKTIKPAVTSQLAK------IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHA 336 (412)
T ss_dssp EEEEEEECCSCTTHHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCCCCHHHHHHHHHHHHH------HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 7 666 7766653 1122233458899999888887431 0 12345555555556665
Q ss_pred HHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHH
Q 002941 763 WDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~ 841 (863)
+.+.+.+..... .+.-+... |.++.+.+ + ...+...+.++||++.+ .+|+.+. .++++++++
T Consensus 337 l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~---~---------~~~~~~~l~~~gi~v~~---~~Ris~~-~~~~~~i~~ 399 (412)
T 1yaa_A 337 LRDHLVKLGTPG-NWDHIVNQCGMFSFTGL---T---------PQMVKRLEETHAVYLVA---SGRASIA-GLNQGNVEY 399 (412)
T ss_dssp HHHHHHHHTCSS-CCTHHHHCCSSEEECCC---C---------HHHHHHHHHHHCEECCT---TSEEEGG-GCCTTTHHH
T ss_pred HHHHHHhhCCCC-CeeeeccCceEEEeeCC---C---------HHHHHHHHHhCCEEecc---CcEEEEc-cCCHhHHHH
Confidence 554443321000 12112233 34333222 1 23454455578999987 3678765 358999999
Q ss_pred HHHHHHHHHHH
Q 002941 842 LLLKLYQRLEE 852 (863)
Q Consensus 842 ~v~~L~~~l~~ 852 (863)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-16 Score=178.30 Aligned_cols=333 Identities=11% Similarity=-0.006 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC-CC----hHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHh-hc
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN-VY----EPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSF-DH 489 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~-~~----~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~-~~ 489 (863)
+++.+.+++.+++.++.......+ .. +...+++++++++++.+ ..+.++|+++|++|+..|++.++ .++. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~-~~~~~~~ 154 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAK-MYALHHR 154 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHH-HHHHHHS
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHH-HHHHhcC
Confidence 468999999999988655432122 12 33456777788877642 13579999999999999999994 3422 12
Q ss_pred cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hh
Q 002941 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WL 568 (863)
Q Consensus 490 G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~ 568 (863)
|.. +.+|++... .|.....++...|.. +..++... .+
T Consensus 155 g~~-------------~~~Vi~~~~-~h~~~~~~~~~~G~~----------------------------~~~v~~~~~~~ 192 (497)
T 3mc6_A 155 GIT-------------EPEIIAPVT-AHAGFDKAAYYFGMK----------------------------LRHVELDPTTY 192 (497)
T ss_dssp CCS-------------SCEEEEETT-SCHHHHHHHHHSCCE----------------------------EEEECBCTTTC
T ss_pred CCC-------------CceEEEeCC-ccHHHHHHHHHcCCe----------------------------EEEEecCcccC
Confidence 211 145655554 455444443332210 11122111 00
Q ss_pred hhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHH
Q 002941 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (863)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lre 648 (863)
.-| .+.+++.+. +++++|+++.. ++..|.+.+ +++|.+
T Consensus 193 ---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~~----l~~i~~ 230 (497)
T 3mc6_A 193 ---------------------QVD--------LGKVKKFIN--------KNTVLLVGSAP-NFPHGIADD----IEGLGK 230 (497)
T ss_dssp ---------------------SBC--------TTTTGGGCC--------SSEEEEEEETT-CTTTCCCCS----CTTTTT
T ss_pred ---------------------cCC--------HHHHHHHHh--------hCCEEEEEECC-CCCCCcCCC----HHHHHH
Confidence 001 012333331 24678888876 888898866 889999
Q ss_pred HHHHcCCeEEEeccccccccc-------CC--cchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCcc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRL-------GV--ETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRt-------G~--~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~~ 717 (863)
+|++||++||+||+|+|+.+. |. .+.....|+ |++++ .|.+.+| .++|+++++++.+.......
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~-- 305 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAP-KGSSVIMYRNSDLRMHQYYV-- 305 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCC-SSCEEEECSSHHHHTTTSCC--
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCC-CCceeEEecCHHHHhhhhcc--
Confidence 999999999999999877553 21 234444454 77765 4988777 78999999877665432110
Q ss_pred ceeecc-----cCC--CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc-CCCeeEe-cccceEEE
Q 002941 718 KALLHG-----HSY--SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS-HRTVQRV-VALGTLCA 788 (863)
Q Consensus 718 ~~~~~~-----~T~--~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~-~p~v~~v-rg~Gl~~~ 788 (863)
...+.+ .++ +.+....++..++++.+.++++ +++.+....+.+++.+. +.+ .|.+.-+ ...+.++.
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~-~~~~~~~~~~~~~l~~~----L~~~~~g~~~~~~~~~~~v~ 380 (497)
T 3mc6_A 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGY-IESCQEIVGAAMKFKKY----IQENIPDLDIMGNPRYSVIS 380 (497)
T ss_dssp BTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHSCTTCEECSCCCSSEEE
T ss_pred cccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHH----HHhcCCCEEEecCCCeeEEE
Confidence 000111 111 1223334555666666644433 22333333344433323 333 3433222 24556666
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+..... ...++.+.|.++||+++... +.+|+.++ .+|++++++++++|+++++++.
T Consensus 381 ~~~~~~---------~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 381 FSSKTL---------NIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp EECTTT---------THHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHT
T ss_pred EeCCCC---------CHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHH
Confidence 654321 25678999999999988653 56788877 7899999999999999998764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=173.14 Aligned_cols=282 Identities=12% Similarity=0.050 Sum_probs=182.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccccee
Q 002941 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (863)
Q Consensus 447 eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~ 526 (863)
+|.++|+++++. +.+++++||++|++.+++..++ .| .+|++...+||+.......+
T Consensus 2 ~l~~~la~~~g~---~~~i~~~sG~~a~~~~~~~~~~---------~g------------~~v~~~~~~~~~~~~~~~~~ 57 (331)
T 1pff_A 2 ALEGKIAKLEHA---EACAATASGMGAIAASVWTFLK---------AG------------DHLISDDCLYGCTHALFEHQ 57 (331)
T ss_dssp HHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcC---------CC------------CEEEEcCCCcchHHHHHHHH
Confidence 578889998874 4788888999999999986521 12 57999999998864332211
Q ss_pred cCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHH
Q 002941 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (863)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~ 606 (863)
... .+ . .+..++. .| .+.+++
T Consensus 58 ~~~---~g-----------~-----------~~~~~~~--------------------------~d--------~~~l~~ 78 (331)
T 1pff_A 58 LRK---FG-----------V-----------EVDFIDM--------------------------AV--------PGNIEK 78 (331)
T ss_dssp HHH---TT-----------C-----------EEEEECT--------------------------TS--------TTHHHH
T ss_pred HHh---cC-----------C-----------EEEEeCC--------------------------CC--------HHHHHH
Confidence 000 00 0 0000110 01 122333
Q ss_pred HHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH-cCCeEEEecccccccccCCcchhhhcCCCCcEE
Q 002941 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (863)
Q Consensus 607 ~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv 685 (863)
.+. +++.+|+++++ +++.|.+.+ +++|.++|++ ||+++|+||+|+ .|...... .++ +|++
T Consensus 79 ~i~--------~~~~~v~~~~~-~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~-~~~~~~~~---~~~--~d~~ 139 (331)
T 1pff_A 79 HLK--------PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFA-SPILTNPL---DLG--VDIV 139 (331)
T ss_dssp TCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTT-HHHHCCGG---GGT--CSEE
T ss_pred hhc--------CCCeEEEEECC-CCCcCcccC----HHHHHHHHhhhcCCEEEEECCCc-ccccCChh---hcC--CcEE
Confidence 332 35788999987 899998876 9999999999 999999999996 33332211 234 5665
Q ss_pred --EeccccCCCCCC-ceeeeccH-HHHHhhhcCCccceeecc-cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHH
Q 002941 686 --CYGKLLTGGVIP-LAATLATN-AVFDSFVGDSKLKALLHG-HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (863)
Q Consensus 686 --t~sKgLggG~~P-igav~~~~-~i~~~l~~~~~~~~~~~~-~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~ 760 (863)
+++|.++++..+ +|++++++ ++++.+... .+. .+++.++++++++.++++.+. ...++..++.+.+.
T Consensus 140 ~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~ 211 (331)
T 1pff_A 140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQG------IKDITGAIISPHDAWLITRGTLTLD--MRVKRAAENAQKVA 211 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHHHHHHHHHTC------CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred EEECccccCCCCCceEEEEEeCcHHHHHHHHHH------HHhhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHHHHHHH
Confidence 579999864367 78999998 898887652 233 456788999888888887542 12334455555555
Q ss_pred HHHHHHH------HHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------
Q 002941 761 ELWDLEL------IQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------- 822 (863)
Q Consensus 761 ~~l~~~l------~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------- 822 (863)
+.+.+.. .+.+.+.|.+. ..++.|.++.+.+. + ...+.+.|.++||++++.
T Consensus 212 ~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~~~s~g~~~sl 280 (331)
T 1pff_A 212 EFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSLAVSLGGPESL 280 (331)
T ss_dssp HHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEECSSCCSSSCE
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCceeccCCCCccee
Confidence 5443210 00011122111 12457889999885 2 345677788999977532
Q ss_pred -----------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 823 -----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 823 -----------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.+|++++...++++++.++++|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 281 IQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999988754
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-16 Score=170.64 Aligned_cols=336 Identities=13% Similarity=-0.004 Sum_probs=194.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCC-CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~-~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~A 477 (863)
+|+|.. ..|.++|+.+||.+.+++.+++++++.. ....+ .++...+|.++|+++++. +..+|++||++|++.|
T Consensus 4 ~~~~~~--~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~---~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 4 RLRTSF--QQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM---DDAVFFPSGTMAQQVA 78 (357)
T ss_dssp HHHHHH--HTCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC---SEEEEESCHHHHHHHH
T ss_pred hhhhHH--HhhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 566622 2356677778999999999988875311 11112 236678999999999884 5667779999999999
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.+.+ . | ..++|.....||........... . .
T Consensus 79 l~~~~~-~--------g-----------d~~~vi~~~~~~~~~~~~~~~~~---~------------------------~ 111 (357)
T 3lws_A 79 LRIWSD-E--------T-----------DNRTVAYHPLCHLEIHEQDGLKE---L------------------------H 111 (357)
T ss_dssp HHHHHH-H--------H-----------TCCEEEECTTCHHHHSSTTHHHH---H------------------------S
T ss_pred HHHHhh-c--------C-----------CCcEEEecccceeeeeccchhhh---c------------------------c
Confidence 987732 1 1 12256666667654332110000 0 0
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
+...+++|... ..-| .+. |++. .+ +.+|++++. ++..|..+
T Consensus 112 g~~~~~v~~~~--------------------~~~d--------~~~----l~~~-----~~-~~~v~~~~p-~np~~G~~ 152 (357)
T 3lws_A 112 PIETILVGAAD--------------------RLMT--------LDE----IKAL-----PD-IACLLLELP-QREIGGVA 152 (357)
T ss_dssp SCEEEECSCTT--------------------SCCC--------HHH----HHTC-----CS-CSEEEEESS-BGGGTSBC
T ss_pred CcEEEEecCCC--------------------CCcC--------HHH----HhcC-----cC-cceEEEEcc-cccCCcee
Confidence 01111222100 0011 122 3321 22 567888876 77753367
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccc--cccccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhc
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~T--GfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~ 713 (863)
++.+.+++|.++|++||++||+||++. .++..|.... .+....|++ +++|+++|. ..|++++++++++.+..
T Consensus 153 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~sK~~~~~--~gg~~~~~~~~~~~~~~ 228 (357)
T 3lws_A 153 PAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA--EIAGLFDSIYISFYKGLGGI--AGAILAGPAAFCQTARI 228 (357)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH--HHHTTSSEEEEESSSTTCCS--SCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH--HHHhcCCEEEEeccccCCCC--ceEEEEcCHHHHHHHHH
Confidence 789999999999999999999999974 0111222111 111124554 889999653 23778889999887753
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE--ecccceEEEEEE
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR--VVALGTLCAIEL 791 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~--vrg~Gl~~~iel 791 (863)
- +....+.++..++.+ +++.++|+...+ ...+..++.+++ .+.+.+.|.+.- ....+.++.+.+
T Consensus 229 ~---~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~l--------~~~L~~~~g~~~~~~~~~~~~~~~~~ 294 (357)
T 3lws_A 229 W---KRRYGGDLISLYPYI-VSADYYYELRKD--RMGQYYEQAKQL--------AEQFNALPGVHTTPEVPVSNMFHLHF 294 (357)
T ss_dssp H---HHHTTCCCSCCHHHH-HHHHHHHHHHTT--CHHHHHHHHHHH--------HHHHHTSTTEEEESSSCSSSEEEEEE
T ss_pred H---HHHhcCCcccchHHH-HHHHHHHHHHHH--HHHHHHHHHHHH--------HHHHHhCCCCeeccCCCcceEEEEEe
Confidence 1 011122333345544 445566764321 122223333332 233455665543 235667777877
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecC---CCCcHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCG---PCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~pp---l~~t~eeid~~v~~L~~~l 850 (863)
.... ......+.+.|.++||++++.. ..+|+... ...+++++++++++|.+++
T Consensus 295 ~~~~------~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 295 DGQA------ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp ESCH------HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cCCh------HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 6431 0124678889999999998642 25666543 2368899999999988764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=171.44 Aligned_cols=262 Identities=11% Similarity=0.001 Sum_probs=165.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|.++|+++.+. +.+++++||++|++.+++.+++ .| .+||+...+|||
T Consensus 55 ~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~~~~~---------~g------------d~vl~~~~~y~~ 110 (389)
T 3acz_A 55 RLGNPTVEQFEEMVCSIEGA---AGSAAFGSGMGAISSSTLAFLQ---------KG------------DHLIAGDTLYGC 110 (389)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTTCC---------TT------------CEEEEESSCCHH
T ss_pred CCCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCchH
Confidence 45678899999999999874 5788899999999999986521 12 579999999998
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... .. |.....+|. .|
T Consensus 111 ~~~~~~~~~~--------------~~-------------g~~~~~v~~------------------------~d------ 133 (389)
T 3acz_A 111 TVSLFTHWLP--------------RF-------------GIEVDLIDT------------------------SD------ 133 (389)
T ss_dssp HHHHHHHHHH--------------HT-------------TCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------Hc-------------CCEEEEECC------------------------CC------
Confidence 5332211000 00 000001110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.++ +++.+|++|++ ++..|.+.+ +++|.++|++||+++|+||+++++ ..+.. +
T Consensus 134 --~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~-~~~~~-----~ 192 (389)
T 3acz_A 134 --VEKVKAAWK--------PNTKMVYLESP-ANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP-CFLKP-----L 192 (389)
T ss_dssp --HHHHHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-TTCCG-----G
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc-cccCc-----c
Confidence 133444442 35789999997 899998876 899999999999999999999754 22222 2
Q ss_pred CCCCcEE--EeccccCCCCCCc-eeeeccH-HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pi-gav~~~~-~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+..+|++ +++|.++|+..++ |++++++ ++++.+... ...++...+|..++++++.|+.+. ...++..+
T Consensus 193 ~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~ 264 (389)
T 3acz_A 193 ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFY------RKDAGSLMAPMDAFLCARGMKTLP--IRMQIHME 264 (389)
T ss_dssp GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHH
T ss_pred ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHH------HHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHH
Confidence 3468988 6789998765787 9999998 888877531 111334468888888888887542 22344445
Q ss_pred HHHHHHHHHHHHH------HHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe
Q 002941 755 ERRILRELWDLEL------IQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 821 (863)
Q Consensus 755 ~~~~l~~~l~~~l------~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p 821 (863)
+...+.+.+.+.- ...+.++|.+. ..+|.|.++.+++.. ...+.+.+.+.|+++++
T Consensus 265 ~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-----------~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-----------FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp HHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----------HHHHHHHHTTCSSSEEB
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-----------HHHHHHHHHhCCCcEEC
Confidence 5555554332210 00011112110 114678899999853 12344556677887765
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=179.46 Aligned_cols=289 Identities=11% Similarity=0.005 Sum_probs=181.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|+++|+++.+. +..++++||++|++.|++.+++ .| .+||+...+||+.
T Consensus 55 ~~~~~~~~l~~~la~~~g~---~~~v~~~sGt~A~~~~l~~~~~---------~g------------d~vi~~~~~~~~~ 110 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTLAQ---------AG------------DNIVSTPNLYGGT 110 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEECSCCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CceEEecCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCchHH
Confidence 4678889999999999984 4678888999999999987621 12 5799999999997
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecC-cchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
......+... . |+....+ |. +|
T Consensus 111 ~~~~~~~~~~---~------------------------g~~~~~~~~~------------------------~d------ 133 (421)
T 2ctz_A 111 FNQFKVTLKR---L------------------------GIEVRFTSRE------------------------ER------ 133 (421)
T ss_dssp HHHHHTHHHH---T------------------------TCEEEECCTT------------------------CC------
T ss_pred HHHHHHHHHH---c------------------------CCEEEEECCC------------------------CC------
Confidence 5543211100 0 0000111 10 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|++ ++..|.+.+ +++|.++|++||++||+||+|+++|..+..+
T Consensus 134 --~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~~~----- 193 (421)
T 2ctz_A 134 --PEEFLALTD--------EKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLRPL----- 193 (421)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCCGG-----
T ss_pred --HHHHHHhhc--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCCcc-----
Confidence 234555553 36789999997 999998776 9999999999999999999998788766543
Q ss_pred CCCCcEE--EeccccCCCCCCceeeecc---HHH----HHhhhcCCc-cce-------------------eecccCCCcc
Q 002941 679 GCVPDIA--CYGKLLTGGVIPLAATLAT---NAV----FDSFVGDSK-LKA-------------------LLHGHSYSAH 729 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pigav~~~---~~i----~~~l~~~~~-~~~-------------------~~~~~T~~~~ 729 (863)
+..+|++ +++|++++...++|++++. .++ ++.+..... ... .........+
T Consensus 194 ~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~ 273 (421)
T 2ctz_A 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALG 273 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCC
Confidence 2358998 6789999743788888774 122 222221000 000 0111234678
Q ss_pred HHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-------------------cccceEEEEE
Q 002941 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-------------------VALGTLCAIE 790 (863)
Q Consensus 730 pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-------------------rg~Gl~~~ie 790 (863)
|+.++++++.|+.+.. ..++..++.+++ .+.+.++|.|..+ +|.|.+++++
T Consensus 274 ~~~a~~~~~~l~~l~~--r~~~~~~~a~~l--------~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~ 343 (421)
T 2ctz_A 274 PFEAWVVLLGMETLSL--RAERHVENTLHL--------AHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFG 343 (421)
T ss_dssp HHHHHHHHHHHTTHHH--HHHHHHHHHHHH--------HHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHcCcchHHH--HHHHHHHhHHHH--------HHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEE
Confidence 9999988888876531 122333333333 3345567776655 5889999999
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec----------------------------CCEEEEecCCCCcHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----------------------------g~~lr~~ppl~~t~eeid~~ 842 (863)
+.... .....+...+...|+.++.+ .+.+|++. +.|++|.+
T Consensus 344 l~~~~-------~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~----g~e~~~~l 412 (421)
T 2ctz_A 344 LKGGY-------EAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSV----GLEHVEDL 412 (421)
T ss_dssp ETTHH-------HHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEEC----CSSCHHHH
T ss_pred eCCCH-------HHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEe----CCCCHHHH
Confidence 97421 12444555443333222111 25777763 34678888
Q ss_pred HHHHHHHH
Q 002941 843 LLKLYQRL 850 (863)
Q Consensus 843 v~~L~~~l 850 (863)
++.|++++
T Consensus 413 i~~l~~al 420 (421)
T 2ctz_A 413 KAELKEAL 420 (421)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887765
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=170.56 Aligned_cols=363 Identities=11% Similarity=0.068 Sum_probs=196.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-----ChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-----~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
.|||..+. ++ .+|+|.+|+.+++..........+. .+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 20 ~~Ld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 20 VYMDYNAT------TP-LEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGTESN 91 (432)
T ss_dssp EECBTTTC------CC-CCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEeeCCcc------CC-CCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChHHHH
Confidence 78886542 13 6899999999998763211111111 123568999999988743 36899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
+.+++.+.+.|...... .| .+||+...+||+... +-++... +... ..+|.. +.....
T Consensus 92 ~~~~~~~~~~~~~~~~~-~g------------d~vl~~~p~y~~~~~--i~~~~~~-h~s~-~~~~~~----~~~~~g-- 148 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTL-QG------------RTVDQISPEEGTRPH--FITCTVE-HDSI-RLPLEH----LVEDQV-- 148 (432)
T ss_dssp HHHHHHHHHHHHHHHHH-C------------------------CCCE--EEEETTC-CHHH-HHHHHH----HHHTTS--
T ss_pred HHHHHHHHhhhhhcccc-CC------------ccccccccccccCCe--EEEecCc-chhH-HHHHHH----HHHhcC--
Confidence 99999884333211000 12 569999999998621 1111100 0000 000000 000000
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
..+..++.... +...| .+.+++.+. .++.+|+++++ ++..|
T Consensus 149 --~~v~~v~~~~~--------------------~~~~d--------~~~l~~~i~--------~~~~~v~~~~~-~nptG 189 (432)
T 3a9z_A 149 --AEVTFVPVSKV--------------------NGQVE--------VEDILAAVR--------PTTCLVTIMLA-NNETG 189 (432)
T ss_dssp --CEEEEECCCTT--------------------TSSCC--------HHHHHHTCC--------TTEEEEECCSB-CTTTC
T ss_pred --cEEEEEecCcc--------------------cCCcC--------HHHHHHhcc--------CCceEEEEECc-ccCcc
Confidence 00111221100 00011 234444432 35778899997 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcC----------CeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeee
Q 002941 635 MHMVDPLFQRILVKECQNRK----------IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATL 702 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~g----------ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~ 702 (863)
.+.+ +++|.++|++|| +++|+||+| ++|+.. ..... ..+|++++ +|.+ | .++|+++
T Consensus 190 ~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~--~~~~~--~~~d~~~~s~~K~~--g-~~~G~~~ 257 (432)
T 3a9z_A 190 VIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRR--VDVED--LGVDFLTIVGHKFY--G-PRIGALY 257 (432)
T ss_dssp BBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSC--CCHHH--HCCSEEEEEGGGTT--C-CSCEEEE
T ss_pred cccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCcc--cChhh--cCCCEEEEehhHhc--C-CcceEEE
Confidence 8887 788999999999 999999999 666542 22222 24788765 8976 3 4599999
Q ss_pred ccHHH-HHhhhcCC-ccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe--e
Q 002941 703 ATNAV-FDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV--Q 778 (863)
Q Consensus 703 ~~~~i-~~~l~~~~-~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v--~ 778 (863)
+++++ ...+.... .........+++.++.+++++.++|+.+++ ..+++.+..+.+++.+.+.+.+... .... .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~ 334 (432)
T 3a9z_A 258 VRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSE--NCETYEAHMRDIRDYLEERLEAEFG-KRIHLNS 334 (432)
T ss_dssp ETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHG-GGEEESS
T ss_pred EccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhccC-CcEEEeC
Confidence 98765 22222100 000001123356788999999999997753 2445555555566655555444211 1100 1
Q ss_pred ---EecccceEEEEEEccCCcCCCCchHHHHHHHHHHH----HCCcEEEe-------------------cCCEEEEecCC
Q 002941 779 ---RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR----EDGVYMRP-------------------LGNVIYLMCGP 832 (863)
Q Consensus 779 ---~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~----e~GV~~~p-------------------~g~~lr~~ppl 832 (863)
..+..|.++.+.+.+.. .. ...+...+. +.|+.+.+ .++.+|+.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~ 407 (432)
T 3a9z_A 335 RFPGVERLPNTCNFSIQGSQ----LR---GYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGR 407 (432)
T ss_dssp CCTTCCBCTTEEEEEECSTT----CC---HHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCT
T ss_pred CCCcccCCCCEEEEEeCCCC----Cc---HHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCC
Confidence 11345667777776421 00 122333221 12222211 23789999888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.+|++|+++++++|+++++++.
T Consensus 408 ~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 408 STTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999887654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=175.43 Aligned_cols=342 Identities=11% Similarity=-0.030 Sum_probs=185.1
Q ss_pred EEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCC-----CCCChHHHHHHHHHHhhcCCCCCCe
Q 002941 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP-----ENVYEPALECAELLLQGVGKGWASR 463 (863)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~-----~~~~~~~~eLae~L~~~~p~~~~~~ 463 (863)
.++.++. -|||+.+. +. .+|++.+|+.+++.+....... ....+...++.++|+++++.+ .+.
T Consensus 15 ~~~~~~~----iyld~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~ 82 (400)
T 3vax_A 15 VPRGSHM----TYLDAAAT------TR-VDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDE 82 (400)
T ss_dssp -----------CCCCCCCC------SS-SCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGG
T ss_pred CcccCCc----EEecCCCC------CC-CCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence 3444545 78887652 23 5799999999998764211000 012344678999999988753 358
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcccccccc-EEEEecCCCccCccccceecCCCCCCCCCcCCccc
Q 002941 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (863)
Q Consensus 464 v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~-~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~ 542 (863)
++|+++|++|++.+++.+. .+.... | . .||+....|++.......+.. . +.
T Consensus 83 v~~~~g~t~al~~~~~~l~-~~~~~~----g------------d~~Vl~~~~~~~~~~~~~~~~~~-~---g~------- 134 (400)
T 3vax_A 83 LIFTSGATESNNIALLGLA-PYGERT----G------------RRHIITSAIEHKAVLEPLEHLAG-R---GF------- 134 (400)
T ss_dssp EEEESCHHHHHHHHHHTTH-HHHHHH----T------------CCEEEEETTSCHHHHHHHHHHHT-T---TC-------
T ss_pred EEEeCCHHHHHHHHHHHHH-HhhccC----C------------CCEEEECccccHhHHHHHHHHHh-c---CC-------
Confidence 9999999999999999874 232111 1 4 688877777664332222210 0 00
Q ss_pred CCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 002941 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (863)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA 622 (863)
.+..++....+ .-| .+.+++.+. +++.+
T Consensus 135 ---------------~~~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~ 162 (400)
T 3vax_A 135 ---------------EVDFLTPGPSG---------------------RIS--------VEGVMERLR--------PDTLL 162 (400)
T ss_dssp ---------------EEEEECCCTTC---------------------CCC--------HHHHHTTCC--------TTEEE
T ss_pred ---------------eEEEEccCCCC---------------------CcC--------HHHHHHhcC--------CCceE
Confidence 00111111000 011 133443332 35788
Q ss_pred EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCcee
Q 002941 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAA 700 (863)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Piga 700 (863)
|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ +|... ....+. +|++++| | +.|+ .++|+
T Consensus 163 v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K-~~g~-~g~g~ 229 (400)
T 3vax_A 163 VSLMHV-NNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK-IGAP-KGVGA 229 (400)
T ss_dssp EECCSB-CTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG-GTSC-SSCEE
T ss_pred EEEECC-CCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH-hCCC-CceEE
Confidence 999997 999998876 7999999999999999999995 43321 122234 8998765 9 5444 46888
Q ss_pred ee-ccHH-HH---HhhhcCCccceee-cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 701 TL-ATNA-VF---DSFVGDSKLKALL-HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 701 v~-~~~~-i~---~~l~~~~~~~~~~-~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++ ++++ +. ..+...-...... ...+.+.++.+++++.++++.+++ ..+++.+..+.+++.+.+. +. .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~----L~-~ 302 (400)
T 3vax_A 230 LVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEA--EHAQWQVAAQDLRSRLLAG----LA-S 302 (400)
T ss_dssp EEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHH----HT-T
T ss_pred EEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHh----hC-C
Confidence 88 7762 11 1111100000000 112344578888888888887643 2345555555555554433 33 3
Q ss_pred CCeeEec----ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEE
Q 002941 775 RTVQRVV----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVI 826 (863)
Q Consensus 775 p~v~~vr----g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~l 826 (863)
+.+.-+. ..+.++.+.+.... ...+.+.|. +||.+++. .+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 372 (400)
T 3vax_A 303 TSFQVNGDQDHVVPHILNLSFEDVD---------AEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSL 372 (400)
T ss_dssp TTCEECSCTTSBCTTEEEEECTTCC---------HHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEE
T ss_pred CCEEEeCCcccCCCCEEEEEeCCCC---------HHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceE
Confidence 3332221 12457777665322 456788888 88877652 3889
Q ss_pred EEec-CCCCcHHHHHHHHHHHHHHHHH
Q 002941 827 YLMC-GPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 827 r~~p-pl~~t~eeid~~v~~L~~~l~~ 852 (863)
|+.+ +..++++++++++++|++++++
T Consensus 373 Rls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 373 RFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEEEEEC--------------------
T ss_pred EEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 9998 8889999999999999887753
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=169.52 Aligned_cols=322 Identities=11% Similarity=-0.026 Sum_probs=177.7
Q ss_pred CcHHHHHHHHHHHH-hcccccC--CC-CCChHHH----HHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhh
Q 002941 417 LQIELARDMGYTAA-RFGHVMF--PE-NVYEPAL----ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~-~~~~~~~--~~-~~~~~~~----eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~ 488 (863)
.+|+|++|+.+++. .+..... .. ..++... .+.+++++.++.+ .+. ++++||++|++.+++.+++
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~-i~~~sGt~a~~~~~~~~~~----- 109 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK-FAN-VQPNSGSQANQGVYAALIN----- 109 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEE-CCCSSHHHHHHHHHHHHSC-----
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCC-Ccc-eEeccHHHHHHHHHHHhcC-----
Confidence 36999999999884 4322110 00 1122222 3445778887742 122 5668899999999987721
Q ss_pred ccccccccCCCccccccccEEEEecCCCccCcccc--ceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 489 ~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ga--ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
.| .+|++...+||+..... +...+. +...+++|.
T Consensus 110 ----~g------------d~vl~~~~~~~~~~~~~~~~~~~g~----------------------------~~~~~~~~~ 145 (417)
T 3n0l_A 110 ----PG------------DKILGMDLSHGGHLTHGAKVSSSGK----------------------------MYESCFYGV 145 (417)
T ss_dssp ----TT------------CEEEEECC----------------C----------------------------CSEEEEECC
T ss_pred ----CC------------CEEEecccccccccchhhhhhhhcc----------------------------eeeeEeccC
Confidence 12 57999999987743211 111110 000011110
Q ss_pred hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHH
Q 002941 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (863)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~L 646 (863)
.. +...| .+.+++.+.+ .++.+|++.+. ..|...+ +++|
T Consensus 146 ~~-------------------~~~~d--------~~~l~~~i~~-------~~~~~v~~~~~---~~G~~~~----l~~i 184 (417)
T 3n0l_A 146 EL-------------------DGRID--------YEKVREIAKK-------EKPKLIVCGAS---AYARVID----FAKF 184 (417)
T ss_dssp CT-------------------TSSCC--------HHHHHHHHHH-------HCCSEEEECCS---SCCSCCC----HHHH
T ss_pred CC-------------------CCCcC--------HHHHHHHHHh-------cCCeEEEECCc---ccCccCC----HHHH
Confidence 00 00011 2456666642 13345565432 2466555 9999
Q ss_pred HHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeecc-HHHHHhhhcCCccceeec
Q 002941 647 VKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVGDSKLKALLH 722 (863)
Q Consensus 647 relc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~-~~i~~~l~~~~~~~~~~~ 722 (863)
+++|++||++||+||+|+ |+...|..... +. ..|++++| |+++| .++|+++++ +++++.+... ..+
T Consensus 185 ~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~g--~~~G~~~~~~~~~~~~~~~~-----~~~ 254 (417)
T 3n0l_A 185 REIADEIGAYLFADIAHIAGLVVAGEHPSP--FP-YAHVVSSTTHKTLRG--PRGGIIMTNDEELAKKINSA-----IFP 254 (417)
T ss_dssp HHHHHHHTCEEEEECTTTHHHHHTTSSCCC--TT-TCSEEEEESSTTTCS--CSCEEEEESCHHHHHHHHHH-----HTT
T ss_pred HHHHHHcCCEEEEECccchhhhhcccCCCc--cc-cceEEEeeCccccCC--CCeeEEEECCHHHHHHHhhh-----hCC
Confidence 999999999999999973 33222221100 00 35888776 99965 357888888 7888877531 123
Q ss_pred ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec--ccceEEEEEEccCCcCCCC
Q 002941 723 GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 723 ~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr--g~Gl~~~iel~~~~~~~~~ 800 (863)
+.+.+.++..++++.+++..+.++++ +...+....+.+.+.+.+.+ .+ +.-+. ..+.++.+.+....
T Consensus 255 ~~~~~~~~~~~aa~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~----- 323 (417)
T 3n0l_A 255 GIQGGPLMHVIAAKAVGFKFNLSDEW-KVYAKQVRTNAQVLANVLMD----RK-FKLVSDGTDNHLVLMSFLDRE----- 323 (417)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHTSHHH-HHHHHHHHHHHHHHHHHHHH----TT-CEEGGGSCSSSEEEEECTTSS-----
T ss_pred cccCCcHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHh----CC-ceeccCCCCceEEEEEcccCC-----
Confidence 34445577777777777776433332 23333333333433333322 22 11111 23456667665321
Q ss_pred chHHHHHHHHHHHHCCcEEEec-----------CCEEEEecCCC----CcHHHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~-----------g~~lr~~ppl~----~t~eeid~~v~~L~~~l~~l 853 (863)
.....+.+.|.++||++++. .+.+|+.++.. ++++++++++++|.+++++.
T Consensus 324 --~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 324 --FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp --SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 01456777888999999842 25688875533 57899999999999999653
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=178.00 Aligned_cols=311 Identities=13% Similarity=0.055 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
+++.+++.+++....+. ...+...+|.++|+++++. ++++|++||++|++.|++.+ + . + .|
T Consensus 36 ~~~~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~~~---~~~i~~~~gt~al~~~l~~~-~-~----~--~g---- 96 (391)
T 3dr4_A 36 GNERDYVLECMDTTWIS----SVGRFIVEFEKAFADYCGV---KHAIACNNGTTALHLALVAM-G-I----G--PG---- 96 (391)
T ss_dssp SSHHHHHHHHHHHTCCS----SCSHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-T-C----C--TT----
T ss_pred HHHHHHHHHHHHcCCcc----CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C----C--Cc----
Confidence 56777777776653221 2467889999999999984 58999999999999999877 1 0 0 12
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (863)
.+|++...+||+....+...+.. +..++.. ..+
T Consensus 97 --------d~vl~~~~~~~~~~~~~~~~g~~-----------------------------~~~~~~~~~~~--------- 130 (391)
T 3dr4_A 97 --------DEVIVPSLTYIASANSVTYCGAT-----------------------------PVLVDNDPRTF--------- 130 (391)
T ss_dssp --------CEEEEESSSCTHHHHHHHHTTCE-----------------------------EEEECBCTTTC---------
T ss_pred --------CEEEECCCchHHHHHHHHHCCCE-----------------------------EEEEecCcccc---------
Confidence 57999999999875443322110 0001110 000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.-| .+.+++.+ .+++.+|++.. ..|...+ +++|.++|++||++|
T Consensus 131 ------------~~d--------~~~l~~~~--------~~~~~~v~~~n----~tG~~~~----~~~i~~l~~~~~~~l 174 (391)
T 3dr4_A 131 ------------NLD--------AAKLEALI--------TPRTKAIMPVH----LYGQICD----MDPILEVARRHNLLV 174 (391)
T ss_dssp ------------SBC--------GGGSGGGC--------CTTEEEECCBC----GGGCCCC----HHHHHHHHHHTTCEE
T ss_pred ------------CcC--------HHHHHHhc--------CCCceEEEEEC----CCCChhh----HHHHHHHHHHcCCEE
Confidence 001 01122222 13566666433 3455544 899999999999999
Q ss_pred EEecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhc---CCc-----cceeeccc
Q 002941 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSK-----LKALLHGH 724 (863)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~---~~~-----~~~~~~~~ 724 (863)
|+||+|+ +| ..+.-...+..+|++++| |++++| ..|+++++ +++++.+.. .+. ......+.
T Consensus 175 i~D~a~~-~g---~~~~~~~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 248 (391)
T 3dr4_A 175 IEDAAEA-VG---ATYRGKKSGSLGDCATFSFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGF 248 (391)
T ss_dssp EEECTTC-TT---CEETTEETTSSSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCC
T ss_pred EEECccc-cc---ceECCeeecccCCEEEEECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 9999995 32 222222345557998888 999876 36777665 556655432 110 00011234
Q ss_pred CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-----ecccceEEEEEEccCCcCCC
Q 002941 725 SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-----VVALGTLCAIELQAAGCNAG 799 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-----vrg~Gl~~~iel~~~~~~~~ 799 (863)
.+..+++.+|++++.++.++ ++.++..++.+++.+ .+.+. ....... ....+.++.+.+.... .
T Consensus 249 ~~~~~~l~aa~~~~~~~~~~--~~~~~~~~~~~~l~~----~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 317 (391)
T 3dr4_A 249 NYRMTNIQAAIGLAQLERVD--EHLAARERVVGWYEQ----KLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGL---S 317 (391)
T ss_dssp BCBCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHH----HHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSC---S
T ss_pred ccCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HhhcC--CccccCcCCCCCCcceeEEEEEEECCcc---c
Confidence 46778888888887776553 233444444444443 32222 1211111 1233445666665410 0
Q ss_pred CchHHHHHHHHHHHHCCcEEEec-------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 800 YGSLYAASLLKKLREDGVYMRPL-------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 800 ~~~~~~~~l~~~l~e~GV~~~p~-------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.....+.+.|.++||.+++. ...+++.+...+|+||||+++++|++++
T Consensus 318 ---~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 318 ---TTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp ---SCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred ---hhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 02567899999999999864 2578888788899999999999997653
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-15 Score=160.76 Aligned_cols=331 Identities=14% Similarity=0.081 Sum_probs=196.5
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
+++|+.++... . -.|++.+++.+.... ... .+..+...+|.++|+++++ .+.+++++||++|+..+++
T Consensus 4 ~~i~~~~~~~~---~--p~~~~~~a~~~~~~~--~~~--y~~~~~~~~l~~~la~~~g---~~~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 4 MMIDLRSDTVT---K--PTEEMRKAMAQAEVG--DDV--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIM 71 (347)
T ss_dssp -CEECSCGGGC---C--CCHHHHHHHHTCCCC--CGG--GTCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHH
T ss_pred eEEEeccccCC---C--CCHHHHHHHhcCCCC--Ccc--cCCChHHHHHHHHHHHHhC---CceEEEecCcHHHHHHHHH
Confidence 56787764332 2 358888887654211 111 1235567799999999987 3678999999999999887
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccc---ceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ga---ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
...+ .| .+|++...+ |+.+... ....|..
T Consensus 72 ~~~~---------~g------------d~Vl~~~~~-~~~~~~~~~~~~~~g~~-------------------------- 103 (347)
T 1jg8_A 72 AHTQ---------RG------------DEVILEADS-HIFWYEVGAMAVLSGVM-------------------------- 103 (347)
T ss_dssp HHCC---------TT------------CEEEEETTC-HHHHSSTTHHHHHTCCE--------------------------
T ss_pred HhcC---------CC------------CEEEEcCcc-hhhhccccchhhccCeE--------------------------
Confidence 6520 12 457776655 4433221 1111100
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-Cc
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GM 635 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~g-G~ 635 (863)
+..+ .+..+ .-| .+.+++.+.+. ..+..++.+|++++. +++. |
T Consensus 104 --~~~v-~~~~~---------------------~~d--------~~~l~~~i~~~--~~~~~~~~~v~~~~~-~npt~G- 147 (347)
T 1jg8_A 104 --PHPV-PGKNG---------------------AMD--------PDDVRKAIRPR--NIHFPRTSLIAIENT-HNRSGG- 147 (347)
T ss_dssp --EEEE-CEETT---------------------EEC--------HHHHHHHSCCS--CTTSCCEEEEEEESS-BTTTTS-
T ss_pred --EEEe-cCCCC---------------------ccC--------HHHHHHHhccc--cccccCceEEEEecc-ccccCC-
Confidence 0001 00000 001 24455555310 001125788889987 8887 6
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccc---cCCcchhhhcCCCCcE--EEeccccCCCCCCcee-eeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPDI--ACYGKLLTGGVIPLAA-TLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR---tG~~~a~e~~gv~PDi--vt~sKgLggG~~Piga-v~~~~~i~~ 709 (863)
.+.|.+.+++|.++|++||+++|+||+|. +|- .|.. ...+....|. ++++|++++ |+|+ +++++++++
T Consensus 148 ~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 148 RVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGSVVVGDRDFIE 221 (347)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCEEEEECHHHHH
T ss_pred ccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcccccEEEEecccccCC---CceEEEEcCHHHHH
Confidence 55678889999999999999999999873 321 1211 1111112354 468999974 4774 567888877
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~i 789 (863)
.+..- +. .++.++..+++.++++.++|+...+. ..+..++.+++.+ .+.+. .... ......|.++.+
T Consensus 222 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~l~~----~L~~~--~~~~-~~~~~~~~~~~~ 288 (347)
T 1jg8_A 222 RARKA---RK-MLGGGMRQAGVLAAAGIIALTKMVDR--LKEDHENARFLAL----KLKEI--GYSV-NPEDVKTNMVIL 288 (347)
T ss_dssp HHHHH---HH-HHTCCCSSTHHHHHHHHHHHHHSSTT--HHHHHHHHHHHHH----HHHHH--TCBC-CGGGCCSSEEEE
T ss_pred HHHHH---HH-HcCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHhc--Ccee-ccCCCcceEEEE
Confidence 65421 00 13345556677778888888764321 2233333344443 33222 2211 111335667777
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.... ....++.+.|.++||.+++.+ +.+|+.++..++++++++++++|.+++++
T Consensus 289 ~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 289 RTDNLK-------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ECTTSS-------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-------CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 775211 015678888999999999874 78999888889999999999999988764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-15 Score=167.21 Aligned_cols=311 Identities=14% Similarity=0.057 Sum_probs=194.6
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.|++.+|+.+++++..+ ...+...+|.++|+++++. +.+++++||++|++.+++.+ + . . .|
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~al~~~~~~~-~-~----~--~g--- 79 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G-I----G--EG--- 79 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT---
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhCC---CcEEEecChHHHHHHHHHHc-C-C----C--CC---
Confidence 48899999999887532 2357788999999999983 58999999999999999876 1 0 0 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhcccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHK 576 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~ 576 (863)
.+|++...+|++... ++...|.. +..++... .+
T Consensus 80 ---------d~Vl~~~~~~~~~~~-~~~~~g~~----------------------------~~~v~~~~~~~-------- 113 (393)
T 1mdo_A 80 ---------DEVITPSMTWVSTLN-MIVLLGAN----------------------------PVMVDVDRDTL-------- 113 (393)
T ss_dssp ---------CEEEEESSSCHHHHH-HHHHTTCE----------------------------EEEECBCTTTC--------
T ss_pred ---------CEEEeCCCccHhHHH-HHHHCCCE----------------------------EEEEeccCCcC--------
Confidence 579999999988643 22221100 00111100 00
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
..| .+.+++.+. .++.+|++.+. . |...+ +++|.++|++||++
T Consensus 114 -------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~~~ 156 (393)
T 1mdo_A 114 -------------MVT--------PEHIEAAIT--------PQTKAIIPVHY-A---GAPAD----LDAIYALGERYGIP 156 (393)
T ss_dssp -------------CBC--------HHHHHHHCC--------TTEEEECCBCG-G---GCCCC----HHHHHHHHHHHTCC
T ss_pred -------------CCC--------HHHHHHhcC--------CCceEEEEeCC-C---CCcCC----HHHHHHHHHHcCCe
Confidence 011 234555553 25677887774 3 44433 89999999999999
Q ss_pred EEEecccc-cccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhcCCccc------------
Q 002941 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVGDSKLK------------ 718 (863)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~~~~~~------------ 718 (863)
+|+||+|+ |+...|.. ++. +|++++| |+++|| .+|+++++ +++++.+.......
T Consensus 157 li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (393)
T 1mdo_A 157 VIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGG 228 (393)
T ss_dssp BCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC--------
T ss_pred EEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhhccc
Confidence 99999997 44334432 233 8999877 999876 47888886 78887664210000
Q ss_pred -eee-----cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-ee-----EecccceE
Q 002941 719 -ALL-----HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQ-----RVVALGTL 786 (863)
Q Consensus 719 -~~~-----~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v~-----~vrg~Gl~ 786 (863)
.+. .+..+..+++.++++++.++.++ ++.++..++.+++. +.+.+.+. +. ..++.+.+
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~--------~~L~~~~~~~~~~~~~~~~~~~~~ 298 (393)
T 1mdo_A 229 RAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYH--------QAMADLPFQPLSLPSWEHIHAWHL 298 (393)
T ss_dssp ---CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHH--------HHHHTSSCEECCCCSSCEECCCSC
T ss_pred ccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHhcCCcccccCCCCCCCceeEE
Confidence 000 11124458888888888777543 22333333333333 23334441 10 12345567
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------------------CCEEEEecCCCCcHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------------------g~~lr~~ppl~~t~eeid 840 (863)
+.+.+...... ....++.+.|.++||.+++. ...+|+.+...+|++|++
T Consensus 299 ~~v~~~~~~~~-----~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~ 373 (393)
T 1mdo_A 299 FIIRVDEARCG-----ITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFD 373 (393)
T ss_dssp EEEECCHHHHS-----SCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHH
T ss_pred EEEEecccccc-----cCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHH
Confidence 78877531000 01567889999999988752 126898777778999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEF 853 (863)
Q Consensus 841 ~~v~~L~~~l~~l 853 (863)
+++++|+++++..
T Consensus 374 ~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 374 RVITALHQIAGQG 386 (393)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-16 Score=169.84 Aligned_cols=312 Identities=14% Similarity=0.010 Sum_probs=181.2
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
+|+|.+|+.+++.... .+..+...+|.++|+++++. +..+|++||++|++.|++.+.. . |
T Consensus 28 ~p~v~~ai~~~~~~~~-----~~~~~~~~~l~~~la~~~~~---~~~i~~~~g~~a~~~a~~~~~~-~--------g--- 87 (359)
T 3pj0_A 28 LTEALQNIDDNLESDI-----YGNGAVIEDFETKIAKILGK---QSAVFFPSGTMAQQIALRIWAD-R--------K--- 87 (359)
T ss_dssp HHHHTTTSCTTCBCCB-----TTBSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHHH-H--------H---
T ss_pred CHHHHHHHHhhcccCc-----ccCCHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHHh-c--------C---
Confidence 6788888777432211 12456788999999999874 4567779999999999998742 1 2
Q ss_pred CCccccccccEEEEecCCCccCcccc--c-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGA--M-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~ga--l-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (863)
...+|.....+|...... + ...+ ...+.+|...
T Consensus 88 --------~~~vvi~~~~~~~~~~~~~~~~~~~g------------------------------~~~~~v~~~~------ 123 (359)
T 3pj0_A 88 --------ENRRVAYHPLSHLEIHEQDGLKELQQ------------------------------ITPLLLGTAN------ 123 (359)
T ss_dssp --------TCCEEEECTTCHHHHSSTTHHHHHHC------------------------------CEEEECSCTT------
T ss_pred --------CCcEEEEeccceeeehhcchHHHhcC------------------------------ceEEecCCcC------
Confidence 133666666666543221 1 1111 0011111000
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
+ .-| .+. |++. .+++++|++++. ++..|..+++.+++++|.++|++||
T Consensus 124 ------------~--~~d--------~~~----l~~~-----~~~~~~v~~~~p-~n~~~G~~~~~~~l~~l~~~~~~~~ 171 (359)
T 3pj0_A 124 ------------Q--LLT--------IDD----IKSL-----REPVSSVLIELP-QREIGGQLPAFEELEKISEYCHEQG 171 (359)
T ss_dssp ------------S--CCC--------HHH----HHTC-----SSCCSEEEEESS-BGGGTSBCCCHHHHHHHHHHHHHHT
T ss_pred ------------C--CcC--------HHH----HHhc-----cCCceEEEEEec-ccCCCcccCCHHHHHHHHHHHHHcC
Confidence 0 011 122 3221 245778888876 6665446778999999999999999
Q ss_pred CeEEEeccccccc--ccCCcchhhhcCCCCcEE--EeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH
Q 002941 655 IPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730 (863)
Q Consensus 655 ilLI~DEV~TGfG--RtG~~~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p 730 (863)
++||+||++..+. ..|.. ...+....|++ +++|+++++ .. |++++++++++.+... +....+.++..++
T Consensus 172 ~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~~~---~~~~~~~~~~~~~ 244 (359)
T 3pj0_A 172 ISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAKIW---KRRYGGDLISLYP 244 (359)
T ss_dssp CEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHHHH---HHHTTCCCSCCHH
T ss_pred CEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCc-ce-EEEECCHHHHHHHHHH---HHHhCCCcchhHH
Confidence 9999999984221 11211 11111234776 789998765 22 6678899999887531 0112233444455
Q ss_pred HHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe--cccceEEEEEEccCCcCCCCchHHHHHH
Q 002941 731 LGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAASL 808 (863)
Q Consensus 731 la~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~~~~l 808 (863)
.+++ +.++++... +...+..++.+++ .+.+.++|.+.-. ...+.++.+.+.... ......+
T Consensus 245 ~~~a-~~~~l~~~~--~~~~~~~~~~~~l--------~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~l 307 (359)
T 3pj0_A 245 YILS-ADYYFEKRI--GKMAEYFEAAKGL--------AERFNSCSGVKTVPEVPVSNMFHVYFENSA------DEIGAIL 307 (359)
T ss_dssp HHHH-HHHHHHHHG--GGHHHHHHHHHHH--------HHHHHTSTTEEEESSSCSSSEEEEEESSCH------HHHHHHH
T ss_pred HHHH-HHHHHHHHH--HHhHHHHHHHHHH--------HHHHhhCCCceeeccCCcceEEEEEecCcc------chhHHHH
Confidence 5544 445665432 2222333333333 2334456554332 345566667665321 1135678
Q ss_pred HHHHHHCCcEEEecC-------CEEEEecC---CCCcHHHHHHHHHHHHHH
Q 002941 809 LKKLREDGVYMRPLG-------NVIYLMCG---PCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 809 ~~~l~e~GV~~~p~g-------~~lr~~pp---l~~t~eeid~~v~~L~~~ 849 (863)
.+.|.++||+++|.. ..+|+... ...+.+++++++++|.++
T Consensus 308 ~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 308 TKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 889999999998742 35666432 235788899998888765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=167.49 Aligned_cols=314 Identities=12% Similarity=0.084 Sum_probs=189.1
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
-+|++.+|+.++++...+ ...+...+|.++|+++++. +.++|++||++|++.+++.+ +.+ .. .|
T Consensus 11 ~~~~v~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~~-~~~---~~--~g-- 74 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF-SEF---SA--DR-- 74 (375)
T ss_dssp CCHHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS-SCC---CT--TS--
T ss_pred CCHHHHHHHHHHHHcCcc-----cCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHh-ccc---CC--CC--
Confidence 479999999999876321 2356788999999999973 58999999999999999876 100 00 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (863)
.+|++...+||+........ |.. .+.+|...
T Consensus 75 ----------d~Vl~~~~~~~~~~~~~~~~-g~~------------------------------~~~~~~~~-------- 105 (375)
T 2fnu_A 75 ----------NEIITTPISFVATANMLLES-GYT------------------------------PVFAGIKN-------- 105 (375)
T ss_dssp ----------CEEEECSSSCTHHHHHHHHT-TCE------------------------------EEECCBCT--------
T ss_pred ----------CEEEECCCccHhHHHHHHHC-CCE------------------------------EEEeccCC--------
Confidence 57999999998865443221 100 00011000
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
+...| .+.+++.+. +++.+|++... .|.+.+ +++|.++|++||++
T Consensus 106 -----------~~~~d--------~~~l~~~i~--------~~~~~v~~~~~----tG~~~~----l~~i~~l~~~~~~~ 150 (375)
T 2fnu_A 106 -----------DGNID--------ELALEKLIN--------ERTKAIVSVDY----AGKSVE----VESVQKLCKKHSLS 150 (375)
T ss_dssp -----------TSSBC--------GGGSGGGCC--------TTEEEEEEECG----GGCCCC----HHHHHHHHHHHTCE
T ss_pred -----------CCCCC--------HHHHHhhcC--------cCceEEEEeCC----cCCccC----HHHHHHHHHHcCCE
Confidence 00001 012222221 24555554442 455554 89999999999999
Q ss_pred EEEecccccccccCCcchhhhcCCCCcEE--Eec--cccCCCCCCceeeecc--HHHHHhhhcCCccce----------e
Q 002941 657 VIFDEVFTGFWRLGVETTADLLGCVPDIA--CYG--KLLTGGVIPLAATLAT--NAVFDSFVGDSKLKA----------L 720 (863)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~s--KgLggG~~Pigav~~~--~~i~~~l~~~~~~~~----------~ 720 (863)
+|+||+|+ +|... ....++..+|++ +++ |.++.| +|+++++ +++++.+........ .
T Consensus 151 li~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
T 2fnu_A 151 FLSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVK 223 (375)
T ss_dssp EEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEES
T ss_pred EEEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccccccccccc
Confidence 99999995 44332 112234334655 677 999654 6777763 778766542100000 0
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec------ccceEEEEEEccC
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV------ALGTLCAIELQAA 794 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr------g~Gl~~~iel~~~ 794 (863)
..+.++..+++.++++++.++.++ +..+..+.+.+.+ .+.+++.|.+.-.. +.+.++.+.+...
T Consensus 224 ~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T 2fnu_A 224 SIGHNFRLNEIQSALGLSQLKKAP------FLMQKREEAALTY----DRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK 293 (375)
T ss_dssp SCCCBCCCCHHHHHHHHHHHTTHH------HHHHHHHHHHHHH----HHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred cccccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHhhcCCCccccCCCCCCCcceEEEEEEeCcc
Confidence 123345678888888777655432 2233333333333 23344555432221 2344556666432
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEe----c----------------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRP----L----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p----~----------------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
. . .....+.+.|.++||.++. . .+.+|+.++..+|++|+++++++|++
T Consensus 294 ~----~--~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 294 F----F--TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp G----G--GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred c----c--chHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 0 0256788899999999872 1 15799988888899999999999999
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
+++++
T Consensus 368 ~~~~~ 372 (375)
T 2fnu_A 368 TFESF 372 (375)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-16 Score=176.93 Aligned_cols=262 Identities=16% Similarity=0.072 Sum_probs=165.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+ .+.+++++||++|++.|++.+++ .| .+||+...+|||
T Consensus 77 r~~~p~~~~l~~~la~~~g---~~~~~~~~sG~~Ai~~al~~l~~---------~G------------d~Vi~~~~~y~~ 132 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIEG---APAAFATASGMAAVFTSLGALLG---------AG------------DRLVAARSLFGS 132 (414)
T ss_dssp TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTTCC---------TT------------CEEEEESCCCHH
T ss_pred CCCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEcCCccch
Confidence 4567889999999999987 36899999999999999986621 12 579999999998
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... . .|...+.+|. +|
T Consensus 133 ~~~~~~~~~~--------------~-------------~g~~~~~v~~------------------------~d------ 155 (414)
T 3ndn_A 133 CFVVCSEILP--------------R-------------WGVQTVFVDG------------------------DD------ 155 (414)
T ss_dssp HHHHHHTHHH--------------H-------------TTCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------H-------------cCcEEEEeCC------------------------CC------
Confidence 5322111000 0 0000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|+. ++..|.+.+ +++|.++|++||++||+||+++ . |..+....+
T Consensus 156 --~~~l~~ai~--------~~t~~v~le~p-~NptG~~~~----l~~i~~la~~~g~~livDe~~~-~---~~~~~~~~~ 216 (414)
T 3ndn_A 156 --LSQWERALS--------VPTQAVFFETP-SNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA-T---PLLQQGFPL 216 (414)
T ss_dssp --HHHHHHHTS--------SCCSEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-H---HHHCCCGGG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCcccc----HHHHHHHHHHcCCEEEEECCCc-c---cccCCchhc
Confidence 244555553 24678888997 999998865 8999999999999999999995 2 222222345
Q ss_pred CCCCcEEEeccccCC-CCCCceeeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 679 GCVPDIACYGKLLTG-GVIPLAATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 679 gv~PDivt~sKgLgg-G~~Pigav~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
|....+.+++|.+++ |.+++|+++++++.+. .+.... ..++. ..+|..+++++..++.+.. ..++..++.
T Consensus 217 g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~----~~~g~--~~~~~~a~~~~~~l~~l~~--r~~~~~~~a 288 (414)
T 3ndn_A 217 GVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM----RHTGP--AMSAFNAWVLLKGLETLAI--RVQHSNASA 288 (414)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHH----HHHCC--CCCHHHHHHHHHHGGGHHH--HHHHHHHHH
T ss_pred CCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHH----HHcCC--CCCHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 553334457899987 6578999999988776 443210 01222 3478888777777765531 233444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcE
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY 818 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~ 818 (863)
+++.+ .+.++|.+..| +|.|.|+++++..... .....+.++...|...++.
T Consensus 289 ~~l~~--------~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~~~~~l~~~~~~ 357 (414)
T 3ndn_A 289 QRIAE--------FLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFEVLDKMRLIDIS 357 (414)
T ss_dssp HHHHH--------HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHHHHHHCSSSEEC
T ss_pred HHHHH--------HHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHHHHHhCccceEc
Confidence 44443 34456655544 6789999999964200 0012356677777655544
Q ss_pred E
Q 002941 819 M 819 (863)
Q Consensus 819 ~ 819 (863)
+
T Consensus 358 ~ 358 (414)
T 3ndn_A 358 N 358 (414)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=172.38 Aligned_cols=315 Identities=12% Similarity=0.042 Sum_probs=184.9
Q ss_pred CCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccc
Q 002941 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (863)
Q Consensus 413 lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~ 492 (863)
+|+ ++|.+.+++.+++.+..... ..+..+...+|.++|+++++ .++++|++||++|++.|++.+ . . +
T Consensus 8 l~~-~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~---~~~~i~~~sgt~al~~~l~~l-~-~----~-- 74 (373)
T 3frk_A 8 FKP-MHDEIEYEIKFKFEEIYKRN-WFILGDEDKKFEQEFADYCN---VNYCIGCGNGLDALHLILKGY-D-I----G-- 74 (373)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHT-T-C----C--
T ss_pred CCc-ccCCCCHHHHHHHHHHHHCC-CccCCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C-C----C--
Confidence 344 45555555444443321111 11346788999999999998 368999999999999999876 1 0 0
Q ss_pred ccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhh
Q 002941 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSK 571 (863)
Q Consensus 493 tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~ 571 (863)
+| .+||+...+||+.... +...|.. +..++.. ..+
T Consensus 75 ~g------------d~Vi~~~~~~~~~~~~-~~~~g~~----------------------------~~~~~~~~~~~--- 110 (373)
T 3frk_A 75 FG------------DEVIVPSNTFIATALA-VSYTGAK----------------------------PIFVEPDIRTY--- 110 (373)
T ss_dssp TT------------CEEEEETTSCTHHHHH-HHHHSCE----------------------------EEEECEETTTT---
T ss_pred Cc------------CEEEECCCCcHHHHHH-HHHcCCE----------------------------EEEEecccccc---
Confidence 12 5799999999885433 2222100 0001100 000
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~ 651 (863)
. -| .+.+++.+. +++.+|+ | .+..|...+ +++|.++|+
T Consensus 111 ----------------~--~d--------~~~l~~~l~--------~~~~~v~--~--~n~~G~~~~----l~~i~~l~~ 148 (373)
T 3frk_A 111 ----------------N--ID--------PSLIESAIT--------EKTKAII--A--VHLYGQPAD----MDEIKRIAK 148 (373)
T ss_dssp ----------------E--EC--------GGGTGGGCC--------TTEEEEE--E--ECCTTCCCC----HHHHHHHHH
T ss_pred ----------------C--cC--------HHHHHHhcC--------CCCeEEE--E--ECCCcCccc----HHHHHHHHH
Confidence 0 01 012222221 2566666 3 345666554 899999999
Q ss_pred HcCCeEEEecccccccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeecc-HHHHHhhhc---CCc---cce
Q 002941 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFVG---DSK---LKA 719 (863)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~~-~~i~~~l~~---~~~---~~~ 719 (863)
+||++||+||+|+ +| ..+..+.++..+|++++| |++++ |. .|+++++ +++++.+.. ... ...
T Consensus 149 ~~~~~li~D~a~~-~g---~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~ 222 (373)
T 3frk_A 149 KYNLKLIEDAAQA-HG---SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHH 222 (373)
T ss_dssp HHTCEEEEECTTC-TT---CEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBC
T ss_pred HcCCEEEEECCcc-cC---CEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCcc
Confidence 9999999999995 32 223344556668999888 99988 63 6777765 556554431 110 111
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe---c-ccceEEEEEEccCC
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV---V-ALGTLCAIELQAAG 795 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v---r-g~Gl~~~iel~~~~ 795 (863)
...++++..+++++|++++.++.++ ++.++..++.+++. +.+.+.+ +.-. . ....++.+.+....
T Consensus 223 ~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~--------~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 291 (373)
T 3frk_A 223 IYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYI--------AGINNPN-VIIPVEADYAKHVWYTFVIRSEK 291 (373)
T ss_dssp CSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHH--------HHCCCTT-EECCCCCTTEECCCSSEEEEESS
T ss_pred ccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHhccCc-eEeccCCCCCceeeEEEEEEeCC
Confidence 2234567778999988888776543 22333333333333 2333443 2110 0 11111112221111
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEecC----------------------------CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~g----------------------------~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
...+.+.|.++||.+++.. ..+|+.....+|++|||+++++|+
T Consensus 292 ---------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~ 362 (373)
T 3frk_A 292 ---------RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN 362 (373)
T ss_dssp ---------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 5678899999999987421 578888778899999999999998
Q ss_pred HHHHH
Q 002941 848 QRLEE 852 (863)
Q Consensus 848 ~~l~~ 852 (863)
+...+
T Consensus 363 ~~~~~ 367 (373)
T 3frk_A 363 AWKLE 367 (373)
T ss_dssp TCC--
T ss_pred HHhhh
Confidence 76544
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-14 Score=165.17 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=132.4
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
+.+|++... .+..|.+-+ +++|.++|++||++|++||+++|+...+. +.....|+ .+|++++ +|+++++ +
T Consensus 259 ~~~vv~~~~-~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~ 331 (497)
T 2qma_A 259 PFAIVGTAG-TTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQT-I 331 (497)
T ss_dssp EEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCC-S
T ss_pred ceEEEEcCC-CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCC-c
Confidence 445666543 677787655 99999999999999999999988866555 44444566 7899987 8999988 6
Q ss_pred CceeeeccHH-HHHhhhcCCccceeecccCCCccHHHH----------HHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNA-VFDSFVGDSKLKALLHGHSYSAHALGC----------AAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 697 Pigav~~~~~-i~~~l~~~~~~~~~~~~~T~~~~pla~----------AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
++|+++++++ .++.+..... .+....+...+++++ .+..++++.+..+ .++.+.++...+.+++.
T Consensus 332 ~~G~l~~~~~~~~~~~~~~~~--yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~-g~~~~~~~~~~~a~~l~- 407 (497)
T 2qma_A 332 SCGALLVNDKSNFKFLLHHAD--YLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPK-ALGDMYDHLLAQTLEVA- 407 (497)
T ss_dssp SCEEEEESCGGGGGGGCC----------------------CCSCCCTHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEEeCHHHHHHhcCCch--hcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHH-
Confidence 9999998654 3444432110 011111112233332 1234566666433 23334444444444443
Q ss_pred HHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----cC-CEEEEec-CCCCcHHH
Q 002941 766 ELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LG-NVIYLMC-GPCSSPEV 838 (863)
Q Consensus 766 ~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~g-~~lr~~p-pl~~t~ee 838 (863)
+.+.+.+.+.-+ ...+.++.+.+.... .........+.+.|.++|+++.+ .+ ..+|++. +..+|+++
T Consensus 408 ---~~L~~~~~~~~~~~~~~~~v~f~~~~~~---~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~ed 481 (497)
T 2qma_A 408 ---DMIRTNDQFELLAEPSLSTVLFRATHET---ADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSD 481 (497)
T ss_dssp ---HHHHTCTTEEECSCCSSSEEEEEECCSS---SCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred ---HHHhhCCCeEEEcCCCceEEEEEEcCCc---cCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHH
Confidence 334445543221 234567778775431 01112345678889999998864 22 5799986 78899999
Q ss_pred HHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEF 853 (863)
Q Consensus 839 id~~v~~L~~~l~~l 853 (863)
+++++++|+++++++
T Consensus 482 i~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 482 FESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=177.37 Aligned_cols=362 Identities=12% Similarity=0.014 Sum_probs=202.1
Q ss_pred cccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCC--C--CCCeEEEeCChhhHHHHHHHHHHH
Q 002941 408 WWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK--G--WASRAYFSDNGSTAIEIALKMAFR 483 (863)
Q Consensus 408 ~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~--~--~~~~v~f~~SGSeAvE~ALklA~r 483 (863)
++....++ .+|++++++.+++....+.....+..+...++++.+.+..+. . ..+.++++++|++|+..+++....
T Consensus 108 l~~g~~~~-~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~ 186 (533)
T 3f6t_A 108 YCHTELGL-NRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAE 186 (533)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ccCCCCCc-CCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhh
Confidence 44555666 589999999999876544322233455667777777554121 0 015899999999999999986311
Q ss_pred HHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeec
Q 002941 484 KFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (863)
Q Consensus 484 ~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 563 (863)
.. . .++ ..+|++...+|++........+. .+..++
T Consensus 187 ~~--l----~~~----------gd~Viv~~p~~~~~~~~~~~~g~-----------------------------~~~~v~ 221 (533)
T 3f6t_A 187 NH--L----LKK----------GDKIAINEPIFTPYLRIPELKDY-----------------------------ELVEVD 221 (533)
T ss_dssp TT--S----SCT----------TCEEEEESSCCHHHHTSGGGGGS-----------------------------EEEEEC
T ss_pred hh--c----cCC----------cCEEEEcCCCcHHHHHHHHHcCC-----------------------------eEEEEE
Confidence 00 0 010 15799999998876443322111 001111
Q ss_pred CcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCceeCCHHH
Q 002941 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLF 642 (863)
Q Consensus 564 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIv-EPViqg~gG~~~pp~~f 642 (863)
++... ...+ .-| .+.+++.+. + ++.+|++ .| ++..|.+. +.+.
T Consensus 222 ~~~~~---------------~~~~--~~d--------~~~l~~~l~-------~-~~k~v~l~~p--~NPtG~~~-~~~~ 265 (533)
T 3f6t_A 222 LHSYE---------------KNDW--EIE--------PNEIEKLKD-------P-SIKALIVVNP--TNPTSKEF-DTNA 265 (533)
T ss_dssp CCEET---------------TTTS--EEC--------HHHHHHHSC-------T-TEEEEEEESS--CTTTCBCC-CHHH
T ss_pred ecCCc---------------ccCC--CCC--------HHHHHHHhC-------C-CCeEEEEeCC--CCCCcccc-CHHH
Confidence 11000 0000 001 234555442 2 4455554 55 78888654 7788
Q ss_pred HHHHHHHHH-HcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHH-----HHHhhhc--
Q 002941 643 QRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-----VFDSFVG-- 713 (863)
Q Consensus 643 L~~Lrelc~-~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~-----i~~~l~~-- 713 (863)
+++|.++|+ +||+++|+||+|.+|...+........+....+.+|||.+| .| +++|+++++++ +++.+..
T Consensus 266 l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~~li~~l~~~~ 344 (533)
T 3f6t_A 266 LNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEKNVFDDNIAHLDKVE 344 (533)
T ss_dssp HHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESSCHHHHHHHTSCHHH
T ss_pred HHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcHHHHHHHHHhcchhh
Confidence 999999999 69999999999998865443332222233345668999997 67 89999999876 4443210
Q ss_pred ---------C---C------------ccceeecccCCCccHHHHHH-HHHHHHHhc-------ChhhHHhHHHHHHHHHH
Q 002941 714 ---------D---S------------KLKALLHGHSYSAHALGCAA-AAKSIKWFK-------DPQTNHNIIPERRILRE 761 (863)
Q Consensus 714 ---------~---~------------~~~~~~~~~T~~~~pla~AA-alAaL~~l~-------~~~l~~~l~~~~~~l~~ 761 (863)
. . .........+.+.++++.++ ++.++..+. .....+++++..+..++
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~ 424 (533)
T 3f6t_A 345 LRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYD 424 (533)
T ss_dssp HHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 0 0 00011233445556555554 322344442 12233344444444444
Q ss_pred HHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCch-----HHHHHHHHHH-HHCCcEEEec------CCEE
Q 002941 762 LWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGS-----LYAASLLKKL-REDGVYMRPL------GNVI 826 (863)
Q Consensus 762 ~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~-----~~~~~l~~~l-~e~GV~~~p~------g~~l 826 (863)
.+. +.+. .+........|+++.+.+..-. ....+.. ....+++..+ .++||++.|. .+.+
T Consensus 425 ~l~----~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~i 499 (533)
T 3f6t_A 425 QLH----DAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGEL 499 (533)
T ss_dssp HHH----HHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEE
T ss_pred HHH----HhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEE
Confidence 333 3333 3321122345566666664200 0000000 0123444444 4789999863 3688
Q ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002941 827 YLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858 (863)
Q Consensus 827 r~~ppl~~t~eeid~~v~~L~~~l~~l~~~~~ 858 (863)
|++. ..++++++++++++|.++++++.+..+
T Consensus 500 Rls~-a~~~~e~i~~~i~~L~~~l~~~~~~~~ 530 (533)
T 3f6t_A 500 RVSQ-ANLPTEDYALIGKQVLELLKEYYEEFK 530 (533)
T ss_dssp EEES-SSSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEE-eeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9864 336899999999999999988775543
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-14 Score=162.95 Aligned_cols=320 Identities=13% Similarity=0.076 Sum_probs=196.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
..|++.+|+.++++...+. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ . .|
T Consensus 30 ~p~~~~~a~~~~~~~~~y~----~~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~l~~l-~---------~g-- 90 (424)
T 2po3_A 30 DRARLYERLDRALDSQWLS----NGGPLVREFEERVAGLAG---VRHAVATCNATAGLQLLAHAA-G---------LT-- 90 (424)
T ss_dssp CHHHHHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHH-T---------CC--
T ss_pred ChHHHHHHHHHHHhcCCcc----cCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C---------CC--
Confidence 3578999999888753211 114678899999999997 368999999999999999876 2 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEH 575 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~ 575 (863)
.+|++...+||+..... ...|.. +..++... .+
T Consensus 91 ----------d~Vlv~~~~~~~~~~~~-~~~G~~----------------------------~~~v~~~~~~~------- 124 (424)
T 2po3_A 91 ----------GEVIMPSMTFAATPHAL-RWIGLT----------------------------PVFADIDPDTG------- 124 (424)
T ss_dssp ----------SEEEEESSSCTHHHHHH-HHTTCE----------------------------EEEECBCTTTS-------
T ss_pred ----------CEEEECCCccHHHHHHH-HHcCCE----------------------------EEEEecCCCcC-------
Confidence 57999999999875432 221100 00011100 00
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
.-| .+.+++.+. +++.+|++.+. .|... .+++|.++|++||+
T Consensus 125 --------------~~d--------~~~l~~~i~--------~~~~~v~~~~~----tG~~~----~l~~i~~la~~~~~ 166 (424)
T 2po3_A 125 --------------NLD--------PDQVAAAVT--------PRTSAVVGVHL----WGRPC----AADQLRKVADEHGL 166 (424)
T ss_dssp --------------SBC--------HHHHGGGCC--------TTEEEEEEECG----GGCCC----CHHHHHHHHHHTTC
T ss_pred --------------CcC--------HHHHHHhhC--------cCCcEEEEECC----CCCcC----CHHHHHHHHHHcCC
Confidence 001 123333331 24556665332 24333 49999999999999
Q ss_pred eEEEecccc-cccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhcC---Cc---cceeecc
Q 002941 656 PVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVGD---SK---LKALLHG 723 (863)
Q Consensus 656 lLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~~---~~---~~~~~~~ 723 (863)
++|+||+|+ |+...|.. ++..+|++++| |+|++ ..+|+++++ +++++.+... .. ......+
T Consensus 167 ~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~--~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g 239 (424)
T 2po3_A 167 RLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA--FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGG 239 (424)
T ss_dssp EEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC--SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCC
T ss_pred EEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC--CCCeEEEeCCHHHHHHHHHHHhcCccccccccccC
Confidence 999999998 77655542 23336888766 99987 478999998 8887766421 00 0000122
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec---c-c--ceEEEEEEccCCcC
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---A-L--GTLCAIELQAAGCN 797 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr---g-~--Gl~~~iel~~~~~~ 797 (863)
.++..+++++++++..++.++ ...++.+.+.+.+ .+.+.+.+.+.-+. | . ..++.+.+.+....
T Consensus 240 ~~~~~~~~~aa~~l~~~~~~~------~~~~~~~~~~~~l----~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~ 309 (424)
T 2po3_A 240 TNAKMSEAAAAMGLTSLDAFP------EVIDRNRRNHAAY----REHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTG 309 (424)
T ss_dssp CBCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHS
T ss_pred cCCCcCHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHhccCCCccccCCCCCCccccEEEEEEECCccch
Confidence 333456888888877665432 2233333333332 33444555443322 2 1 14566666531000
Q ss_pred CCCchHHHHHHHHHHHHCCcEEEec-C-C------------------------EEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 798 AGYGSLYAASLLKKLREDGVYMRPL-G-N------------------------VIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~~~p~-g-~------------------------~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
.....+.+.|.++||.+++. + . .+++.....++++|+++++++|.++++
T Consensus 310 -----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 310 -----IHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp -----SCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 01456788899999999762 1 1 166654578899999999999999999
Q ss_pred HHHHHHHhhh
Q 002941 852 EFDKVEEKLK 861 (863)
Q Consensus 852 ~l~~~~~~~~ 861 (863)
...+..+.+.
T Consensus 385 ~~~~~~~~~~ 394 (424)
T 2po3_A 385 RGRELTARHR 394 (424)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHhhhhc
Confidence 8877766654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-16 Score=170.59 Aligned_cols=311 Identities=14% Similarity=0.056 Sum_probs=183.7
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
++|.+.+++.+++.+..... ..+..+...+|.++|+++++. ++++|++||++|++.|++.+ + . + +|
T Consensus 10 ~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~---~~~~~~~sGt~al~~al~~~-~-~----~--~g-- 75 (367)
T 3nyt_A 10 QQARIKDKIDAGIQRVLRHG-QYILGPEVTELEDRLADFVGA---KYCISCANGTDALQIVQMAL-G-V----G--PG-- 75 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT--
T ss_pred cccccCHHHHHHHHHHHhcC-CccCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh-C-C----C--Cc--
Confidence 45555555555444322111 113567888999999999983 58999999999999999877 1 0 0 12
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (863)
.+||+...+|++....+...+... ..++....
T Consensus 76 ----------d~Vi~~~~~~~~~~~~~~~~G~~~-----------------------------~~~~~~~~--------- 107 (367)
T 3nyt_A 76 ----------DEVITPGFTYVATAETVALLGAKP-----------------------------VYVDIDPR--------- 107 (367)
T ss_dssp ----------CEEEEESSSCTHHHHHHHHTTCEE-----------------------------EEECBCTT---------
T ss_pred ----------CEEEECCCccHHHHHHHHHcCCEE-----------------------------EEEecCCc---------
Confidence 579999988888654433221100 00111000
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
.+ .-| .+.+++.+ .+++.+|++++. .|...+ +++|.++|++||++
T Consensus 108 ---------~~--~~d--------~~~l~~~i--------~~~~~~v~~~~~----~G~~~~----~~~i~~la~~~~~~ 152 (367)
T 3nyt_A 108 ---------TY--NLD--------PQLLEAAI--------TPRTKAIIPVSL----YGQCAD----FDAINAIASKYGIP 152 (367)
T ss_dssp ---------TC--SBC--------GGGTGGGC--------CTTEEEECCBCG----GGCCCC----HHHHHHHHHHTTCC
T ss_pred ---------cC--CcC--------HHHHHHhc--------CcCCcEEEeeCC----ccChhh----HHHHHHHHHHcCCE
Confidence 00 001 01222222 236778885543 344433 99999999999999
Q ss_pred EEEecccc-cccccCCcchhhhcCCCCcEEEec----cccCC-CCCCceeeec-cHHHHHhhhc---CCc---cceeecc
Q 002941 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLA-TNAVFDSFVG---DSK---LKALLHG 723 (863)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s----KgLgg-G~~Pigav~~-~~~i~~~l~~---~~~---~~~~~~~ 723 (863)
||+||+|+ |+...|. ..+..+|++++| |.+++ |. .|++++ ++++++.+.. .+. ......+
T Consensus 153 li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g 225 (367)
T 3nyt_A 153 VIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVG 225 (367)
T ss_dssp BEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCC
T ss_pred EEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccC
Confidence 99999995 3322232 233334999887 99998 73 777777 5778776543 110 0011225
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE-ecccceEEEEEEccCCcCCCCch
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR-VVALGTLCAIELQAAGCNAGYGS 802 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~-vrg~Gl~~~iel~~~~~~~~~~~ 802 (863)
+++..+++.++++++.++.++ ++.++..++.+++.+.| .+.--..+.... ......++.+.+. +
T Consensus 226 ~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~L----~~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 290 (367)
T 3nyt_A 226 VNSRLDTLQAAILLPKLEIFE--EEIALRQKVAAEYDLSL----KQVGIGTPFIEVNNISVYAQYTVRMD--N------- 290 (367)
T ss_dssp CBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHH----HHTTCCCCCCCTTEECCCSSEEEECS--S-------
T ss_pred cCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh----ccCCeeccCCCCCCceeeEEEEEEeC--C-------
Confidence 678899999999999988663 23444444444444433 222111111100 0111123333332 1
Q ss_pred HHHHHHHHHHHHCCcEEEecC-------------------------CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 803 LYAASLLKKLREDGVYMRPLG-------------------------NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 803 ~~~~~l~~~l~e~GV~~~p~g-------------------------~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
...+.+.|.++||.+++.. ..+++.....+|++|++.+++++.+
T Consensus 291 --~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 291 --RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp --HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 4578889999999886321 3567765667899999999998864
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-16 Score=172.51 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=72.4
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCC-EEEEECCCCCcH-----------HHHHHHHHHHHh-----CCCcEEE
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGI-----------SGTISAYESLKL-----RGYDVVA 283 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i-----------~~~~~~~~~~~~-----~~~~v~g 283 (863)
+|+++|||+||++.|+ +..+ ++|++..+.| +|||.+.++|+| ++++.++++++. .+++|+|
T Consensus 226 ~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~G 303 (349)
T 2obn_A 226 YDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVG 303 (349)
T ss_dssp CSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEE
T ss_pred CCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 5999999999999999 6554 8999999988 999999999999 999999999976 8899999
Q ss_pred EEEcCCCCC------CHHHHHHhhcCCCCeee
Q 002941 284 VVFEDHGLV------NEVPLMSYLRNRVPVLV 309 (863)
Q Consensus 284 vi~n~~~~~------~~~~~~~~~~~~~pvl~ 309 (863)
|++|....+ +.+.+++. .++||++
T Consensus 304 i~lN~~~~~~~~~~~~~~~ie~~--~glPv~d 333 (349)
T 2obn_A 304 IALNTAHLDEYAAKEAIAHTIAE--TGLPCTD 333 (349)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH--HCSCEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHHH--HCCCEEE
Confidence 999987432 34445555 5899997
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=162.27 Aligned_cols=313 Identities=12% Similarity=0.097 Sum_probs=189.4
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.|++.+|+.+++++..+. .+..+...+|.++|+++++. +..++++||++|++.|++.+ + . + .|
T Consensus 16 ~~~~~~a~~~~l~~~~~~---~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~al~~~l~~l-~-~----~--~g--- 78 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G-V----G--PG--- 78 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT---
T ss_pred CHHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C-C----C--Cc---
Confidence 389999999999873211 12456788999999999974 46677778999999999876 1 0 0 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+||+...+||+....+... |.. +..++....
T Consensus 79 ---------d~Vi~~~~~~~~~~~~~~~~-g~~----------------------------~~~v~~~~~---------- 110 (388)
T 1b9h_A 79 ---------TEVIVPAFTFISSSQAAQRL-GAV----------------------------TVPVDVDAA---------- 110 (388)
T ss_dssp ---------CEEEEESSSCTHHHHHHHHT-TCE----------------------------EEEECBCTT----------
T ss_pred ---------CEEEECCCccHHHHHHHHHc-CCE----------------------------EEEEecCCC----------
Confidence 57999999999875433211 100 001111000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
.+ .-| .+.+++.+. .++.+|+ |. +..|.+.+ +++|.++|++||++|
T Consensus 111 --------~~--~~d--------~~~l~~~i~--------~~~~~v~--~~--n~tG~~~~----l~~i~~la~~~~~~l 156 (388)
T 1b9h_A 111 --------TY--NLD--------PEAVAAAVT--------PRTKVIM--PV--HMAGLMAD----MDALAKISADTGVPL 156 (388)
T ss_dssp --------TC--CBC--------HHHHHHHCC--------TTEEEEC--CB--CGGGCCCC----HHHHHHHHHHHTCCB
T ss_pred --------cC--CCC--------HHHHHHhcC--------cCceEEE--Ee--CCccCcCC----HHHHHHHHHHcCCEE
Confidence 00 011 244555552 2456666 74 45676654 899999999999999
Q ss_pred EEecccc-cccccCCcchhhhcCCCCcEEEe--c--cccCCCCCCceeeeccHH-H--HHhhhc---CCc---ccee---
Q 002941 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--G--KLLTGGVIPLAATLATNA-V--FDSFVG---DSK---LKAL--- 720 (863)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivt~--s--KgLggG~~Pigav~~~~~-i--~~~l~~---~~~---~~~~--- 720 (863)
|+||+|+ |+...|.. ...++ |++++ + |+++|| .+|+++++++ + ++.+.. ... ...+
T Consensus 157 i~D~a~~~g~~~~~~~--~~~~~---~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (388)
T 1b9h_A 157 LQDAAHAHGARWQGKR--VGELD---SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHK 229 (388)
T ss_dssp CEECTTCTTCEETTEE--GGGSS---SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCC
T ss_pred EEecchhcCCccCCee--ccccc---ceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceee
Confidence 9999996 33333332 22222 55554 4 889876 5888888875 6 555421 100 0001
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-------cccceEEEEEEcc
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-------VALGTLCAIELQA 793 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-------rg~Gl~~~iel~~ 793 (863)
..+.++..+++.++++.+.++.+++ ..++..++ ++.+ .+.+.+.|.+.-+ +..+.++.+.+..
T Consensus 230 ~~g~~~~~~~~~~a~~~~~~~~l~~--~~~~~~~~----~~~l----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T 1b9h_A 230 IAGSNMRLNEFSASVLRAQLARLDE--QIAVRDER----WTLL----SRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG 299 (388)
T ss_dssp SCCCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHH----HHHH----HHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT
T ss_pred cccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHH----HHHH----HHHhccCCCccccCCCcCCCccceEEEEEEeCC
Confidence 1134455788888887777665532 23333333 3333 2233444433222 2336788887753
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEecC----------------------------------CEEEEecCCCC-cHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------------NVIYLMCGPCS-SPEV 838 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g----------------------------------~~lr~~ppl~~-t~ee 838 (863)
.. ......+.+.|.++||.+++.- ..+++.....+ |++|
T Consensus 300 ~~------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~ed 373 (388)
T 1b9h_A 300 LT------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPE 373 (388)
T ss_dssp CC------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred cC------cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHH
Confidence 20 1135678899999999997521 24777666677 9999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEE 852 (863)
Q Consensus 839 id~~v~~L~~~l~~ 852 (863)
||+++++|.+++++
T Consensus 374 i~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 374 LHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887753
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=165.55 Aligned_cols=322 Identities=13% Similarity=0.067 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccC
Q 002941 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~ 497 (863)
.|++.+|+.++++.. +.. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ + . . .|
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~l-~-~----~--~g--- 72 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSK---SENALALNSATAALHLALRVA-G-V----K--QD--- 72 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHT-T-C----C--TT---
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHc-C-C----C--CC---
Confidence 367888888887652 211 113567899999999997 368999999999999999876 1 0 0 12
Q ss_pred CCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccc
Q 002941 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (863)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (863)
.+|++...+||+........+. . +..++....+
T Consensus 73 ---------d~Vl~~~~~~~~~~~~~~~~g~-~----------------------------~~~v~~~~~~--------- 105 (394)
T 1o69_A 73 ---------DIVLASSFTFIASVAPICYLKA-K----------------------------PVFIDCDETY--------- 105 (394)
T ss_dssp ---------CEEEEESSSCGGGTHHHHHTTC-E----------------------------EEEECBCTTS---------
T ss_pred ---------CEEEECCCccHHHHHHHHHcCC-E----------------------------EEEEEeCCCC---------
Confidence 5799999999987544332110 0 0011111000
Q ss_pred cccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeE
Q 002941 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (863)
Q Consensus 578 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilL 657 (863)
..| .+.+++.+.+ .++++.+|++++. .| .. ..+++|.++|++||+++
T Consensus 106 ------------~~d--------~~~l~~~i~~-----~~~~~~~v~~~~~-~G---~~----~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 106 ------------NID--------VDLLKLAIKE-----CEKKPKALILTHL-YG---NA----AKMDEIVEICKENDIVL 152 (394)
T ss_dssp ------------SBC--------HHHHHHHHHH-----CSSCCCEEEEECG-GG---CC----CCHHHHHHHHHHTTCEE
T ss_pred ------------CcC--------HHHHHHHHhc-----ccCCceEEEEECC-CC---Ch----hhHHHHHHHHHHcCCEE
Confidence 011 2455666643 1224677887775 44 33 34999999999999999
Q ss_pred EEecccc-cccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeecc-HHHHHhhhcCCcc--------ceeecccC
Q 002941 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFVGDSKL--------KALLHGHS 725 (863)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~-~~i~~~l~~~~~~--------~~~~~~~T 725 (863)
|+||+|+ |+...|.... .++ ..|+.++ +|+++++ .+|+++++ +++++.+...... .....++.
T Consensus 153 i~Dea~~~g~~~~~~~~~--~~~-~~~~~s~s~~K~l~~~--~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~ 227 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALG--TFG-EFGVYSYNGNKIITTS--GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYN 227 (394)
T ss_dssp EEECTTCTTCEETTEETT--SSS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCB
T ss_pred EEECcCcccceeCCcccc--ccc-CcEEEEEeCCccCCCC--CceEEEECCHHHHHHHHHHHHhccccCccccccccCcc
Confidence 9999998 6655553211 111 3688888 6888754 58999995 8888776531100 00112334
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc--cce-EEEEEEccCC-------
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA--LGT-LCAIELQAAG------- 795 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl-~~~iel~~~~------- 795 (863)
+..+++.++++++.++.+++ ..+++.++.+++.+.| .+.+ +. ...... .+. ++.+.+....
T Consensus 228 ~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L----~~~~-~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 298 (394)
T 1o69_A 228 YRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFL----GEYF-SF--LDELENSRSNRWLSTALINFDKNELNACQ 298 (394)
T ss_dssp CBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHH----TTTE-EC--CCCCTTEECCCSSEEEEESCCGGGSCCCC
T ss_pred cCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh----cccc-cc--cCCCCCCcceeEEEEEEecchhhcccccc
Confidence 44678888888877776532 3344444444444322 2211 11 111110 121 3455554210
Q ss_pred ------cCCCCchHHHHHHHHHHHHCCcEEEecC-------------------------CEEEEecCCCCcHHHHHHHHH
Q 002941 796 ------CNAGYGSLYAASLLKKLREDGVYMRPLG-------------------------NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 796 ------~~~~~~~~~~~~l~~~l~e~GV~~~p~g-------------------------~~lr~~ppl~~t~eeid~~v~ 844 (863)
............+.+.|.++||.+++.. ..+++.....+|++|++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~ 378 (394)
T 1o69_A 299 KDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISK 378 (394)
T ss_dssp EEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHH
Confidence 0000001135678899999999997641 234444445589999999999
Q ss_pred HHHHHHH
Q 002941 845 KLYQRLE 851 (863)
Q Consensus 845 ~L~~~l~ 851 (863)
+|++++.
T Consensus 379 ~l~~~~~ 385 (394)
T 1o69_A 379 LILKSIK 385 (394)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-15 Score=163.14 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=139.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
+.+++.+.+ .++.+|+++++ ++..|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+....+
T Consensus 127 ~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~- 190 (385)
T 2bkw_A 127 ELITEKLSQ-------NSYGAVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW- 190 (385)
T ss_dssp HHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT-
T ss_pred HHHHHHHhc-------CCCCEEEEEcc-CCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc-
Confidence 456666642 24567888887 899998876 88999999999 99999999995 4432 2222323
Q ss_pred CCCcEEEe--ccccCCCCCCceeeeccHHHHH-hhhc-----CCc-------cc----eeec--cc-CCCccHHHHHHHH
Q 002941 680 CVPDIACY--GKLLTGGVIPLAATLATNAVFD-SFVG-----DSK-------LK----ALLH--GH-SYSAHALGCAAAA 737 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~Pigav~~~~~i~~-~l~~-----~~~-------~~----~~~~--~~-T~~~~pla~AAal 737 (863)
.+|++++ +|+++|+ ..+|++++++++++ .+.. ... .. .+.. +. .++.++.+++++.
T Consensus 191 -~~d~~~~s~~K~~~~~-~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 268 (385)
T 2bkw_A 191 -GVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 268 (385)
T ss_dssp -TCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred -CceEEEecCccccccC-CcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHH
Confidence 4688765 6999875 46799999998877 5420 000 00 0001 11 2357888888888
Q ss_pred HHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec------ccceEEEEEEccCCcCCCCchHHHHHHHHH
Q 002941 738 KSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKK 811 (863)
Q Consensus 738 AaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~ 811 (863)
++|+.+++.+ .+++.+..+.+++.+.+.+. ++.+ +.-+. ..+.++.+.+.+ ...+.+.
T Consensus 269 ~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~---~~~g-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 332 (385)
T 2bkw_A 269 VALKEILEEG-LHKRWDLHREMSDWFKDSLV---NGLQ-LTSVSRYPSNMSAHGLTAVYVAD-----------PPDVIAF 332 (385)
T ss_dssp HHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH---TTTC-CEESSCSSSTTBCSSCEEEECSC-----------HHHHHHH
T ss_pred HHHHHHHHcc-HHHHHHHHHHHHHHHHHHHH---HhcC-ceecccCcccccCCceEEEecCC-----------HHHHHHH
Confidence 9998875432 22333444444444433320 3332 21111 246777777631 4568888
Q ss_pred HHHCCcEEEec------CCEEEEe-cC---CCCcHHHHHHHHHHHHHHHHH
Q 002941 812 LREDGVYMRPL------GNVIYLM-CG---PCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 812 l~e~GV~~~p~------g~~lr~~-pp---l~~t~eeid~~v~~L~~~l~~ 852 (863)
|.++||.+++. .+.+|+. .+ ..++++++++++++|++++++
T Consensus 333 l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 333 LKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp HHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 89999999873 3688987 33 247999999999999887654
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-15 Score=163.33 Aligned_cols=213 Identities=8% Similarity=0.011 Sum_probs=131.1
Q ss_pred cEEE-EEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEE--eccccCCCC
Q 002941 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV 695 (863)
Q Consensus 619 ~iAA-vIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--~sKgLggG~ 695 (863)
++.+ |+++.. ++.+|. +...+++|.++|++||++||+||++..+ ..|...........+|+++ ++|.|+|
T Consensus 140 ~~~~~v~~~~p-~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-- 212 (374)
T 2aeu_A 140 KDTLVIITGST-MDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-- 212 (374)
T ss_dssp TTEEEEEECBC-TTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS--
T ss_pred CccEEEEEccC-CCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC--
Confidence 4677 888886 888885 5677999999999999999999988433 2111110001112468874 7999875
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH----HHHHHHHHHHHH
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL----RELWDLELIQQI 771 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l----~~~l~~~l~~~~ 771 (863)
+.+|++++++++++.+... ...++.+.++++++++.++|+.+. .+..++..++.+.+ .+.+. +.+
T Consensus 213 ~~~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~----~~L 281 (374)
T 2aeu_A 213 PRGGLLAGKKELVDKIYIE------GTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLN----KEL 281 (374)
T ss_dssp CSCEEEEEEHHHHHHHHHH------HHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHH----HHH
T ss_pred cceEEEEECHHHHHHHHHh------hccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHH----Hhh
Confidence 5899999999999887641 112233578999999999999763 22334445555555 34332 333
Q ss_pred hcC---CCee-EecccceEEEEEEccCCcCCCCchHHHHHHHHH-HHHCCcEEEec------CCEEEEecCC-CCcHHHH
Q 002941 772 SSH---RTVQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKK-LREDGVYMRPL------GNVIYLMCGP-CSSPEVC 839 (863)
Q Consensus 772 ~~~---p~v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~------g~~lr~~ppl-~~t~eei 839 (863)
... +.+. ...+.|.++...-.... .......+++.. +.++||++.|. ++.+|+.++. ..+++++
T Consensus 282 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l 357 (374)
T 2aeu_A 282 KAIDDNINIVYERTPTGFVIKRVYKDDT----INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDD 357 (374)
T ss_dssp TTTCTTEEEEEEECSSEEEEEEEESSHH----HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCH
T ss_pred hhhhhccCcceeeCCceEEEEeeccccc----ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHH
Confidence 332 1222 34566766554311100 000011235544 45789999864 2479998653 2234458
Q ss_pred HHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEF 853 (863)
Q Consensus 840 d~~v~~L~~~l~~l 853 (863)
++++++|+++++++
T Consensus 358 ~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 358 NYIIKAIVESIKMA 371 (374)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887765
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=155.51 Aligned_cols=286 Identities=10% Similarity=0.036 Sum_probs=181.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+|.++|+++.+. +.+++++||++|+..+++..++ .| ..||+....|++..
T Consensus 60 ~~~~~~~l~~~ia~~~g~---~~~i~~~~g~~ai~~~~~~l~~---------~g------------d~Vl~~~~~y~~~~ 115 (404)
T 1e5e_A 60 GNPTVSNLEGKIAFLEKT---EACVATSSGMGAIAATVLTILK---------AG------------DHLISDECLYGCTH 115 (404)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESCCCHHHH
T ss_pred cChHHHHHHHHHHHHhCC---CcEEEeCChHHHHHHHHHHHhC---------CC------------CEEEEeCCCchhHH
Confidence 457778999999999873 5889999999999999986521 12 56888888888743
Q ss_pred cc---cceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHH
Q 002941 521 LG---AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (863)
Q Consensus 521 ~g---als~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 597 (863)
.. .+...| ...+.+|. .|
T Consensus 116 ~~~~~~~~~~g------------------------------~~~~~v~~------------------------~d----- 136 (404)
T 1e5e_A 116 ALFEHALTKFG------------------------------IQVDFINT------------------------AI----- 136 (404)
T ss_dssp HHHHTHHHHTT------------------------------CEEEEECT------------------------TS-----
T ss_pred HHHHHHHHHcC------------------------------CEEEEECC------------------------CC-----
Confidence 21 111100 00011110 01
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH-cCCeEEEecccccccccCCcchhh
Q 002941 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 598 ~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+. +++.+|+++.. ++..|.+.+ +++|.++|++ ||+++|+||+|+.+.. ...+
T Consensus 137 ---~~~l~~~i~--------~~t~~v~l~~p-~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~-~~~~--- 196 (404)
T 1e5e_A 137 ---PGEVKKHMK--------PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI-TNPV--- 196 (404)
T ss_dssp ---TTHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT-CCGG---
T ss_pred ---HHHHHHhcC--------CCCcEEEEECC-CCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh-CCcc---
Confidence 123445542 25778888886 899998775 9999999999 9999999999986632 2222
Q ss_pred hcCCCCcEE--EeccccCCCCCCc-eeeeccHHHHH-hhhcCCccceeeccc-CCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 677 LLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFD-SFVGDSKLKALLHGH-SYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 677 ~~gv~PDiv--t~sKgLggG~~Pi-gav~~~~~i~~-~l~~~~~~~~~~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
.+| .|++ +++|.+++.-.++ |++++++++++ .+... .... +...+|++++++.++|+.+. ...++
T Consensus 197 ~~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~------~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~~ 266 (404)
T 1e5e_A 197 DFG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG------IKDITGSVISPHDAWLITRGLSTLN--IRMKA 266 (404)
T ss_dssp GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC------CCCCCCCCCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred ccC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH------HHhCCCCCCCHHHHHHHHHhHhHHH--HHHHH
Confidence 233 5766 6799998643787 99999999888 77642 1222 45678999999888887532 22344
Q ss_pred HHHHHHHHHHHHHHHH------HHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe
Q 002941 752 IIPERRILRELWDLEL------IQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 821 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l------~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p 821 (863)
..++.+.+.+++.+.- ...+.++|.+. ..+|.|.|+.+++... ...+.+.+.+.||+...
T Consensus 267 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~~i~~~~ 336 (404)
T 1e5e_A 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG----------FEGAKKLLDNLKLITLA 336 (404)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH----------HHHHHHHHHTCSSSEES
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC----------HHHHHHHHHhCCCceec
Confidence 4555555544332110 00001111111 1245699999987531 22344556677886543
Q ss_pred c-------------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 822 L-------------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 822 ~-------------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
. .+.+|+++.. |+++++++.|+++++.+
T Consensus 337 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 337 VSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp SCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred cCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 1 2689998665 88999999998888653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-14 Score=154.99 Aligned_cols=316 Identities=10% Similarity=-0.033 Sum_probs=192.0
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC--CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~--~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tg 494 (863)
-+|++.+++.+++..........+ ..+...++.++|+++++....+.++|++||++|++.+++... +
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~-----------~ 83 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV-----------E 83 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-----------S
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-----------C
Confidence 368999999888765321110111 114456788888888764213579999999999999998651 1
Q ss_pred ccCCCccccccccEEEEecCCCccCccccc-eecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gal-s~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
.+++.....+++...... ...|. .+..++.+..+
T Consensus 84 ------------~~~i~~~~~~~~~~~~~~~~~~g~----------------------------~~~~v~~~~~~----- 118 (362)
T 3ffr_A 84 ------------KKSFHCVNGSFSKRFYEFAGELGR----------------------------EAYKEEAAFGK----- 118 (362)
T ss_dssp ------------SEEEEEECSHHHHHHHHHHHHTTC----------------------------EEEEEECCTTC-----
T ss_pred ------------CcEEEEcCcHHHHHHHHHHHHhCC----------------------------CeEEEecCCCC-----
Confidence 256666666666321111 11000 00111111000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
.-|. +.++ + ..++.+|+++.. ++..|.+.+ +++|.++|++|
T Consensus 119 ----------------~~d~--------~~l~--~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~ 159 (362)
T 3ffr_A 119 ----------------GFYP--------ADIT--V--------PADAEIICLTHN-ETSSGVSMP----VEDINTFRDKN 159 (362)
T ss_dssp ----------------CCCG--------GGCC--C--------CTTCCEEEEESE-ETTTTEECC----HHHHTTSGGGS
T ss_pred ----------------CCCH--------HHHh--c--------cCCccEEEEEcC-CCCcceeCC----HHHHHHHHHhC
Confidence 0010 1111 1 234567777776 899998876 89999999999
Q ss_pred -CCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHHhhhcCCc---cceee------
Q 002941 654 -KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSK---LKALL------ 721 (863)
Q Consensus 654 -gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~~l~~~~~---~~~~~------ 721 (863)
|+++|+||+++ +|-.. .... ..|++++ +|.++++ ..+|++++++++++.+..... ...+.
T Consensus 160 p~~~li~D~a~~-~~~~~--~~~~----~~d~~~~s~~K~~~~~-~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 231 (362)
T 3ffr_A 160 KDALIFVDAVSS-LPYPK--FDWT----KIDSVFFSVQKCFGLP-AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSM 231 (362)
T ss_dssp TTSEEEEECTTT-TTSSC--CCTT----SCSEEEEETTSTTCCC-SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHH
T ss_pred CCCEEEEecccc-cCCcc--cChh----HCcEEEEecccccCCC-CceEEEEECHHHHHHhhhccccCCCCcccccHHHH
Confidence 99999999985 33211 1111 1788765 5999854 346888899998876653100 00000
Q ss_pred -----ccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-----ccceEEEEE
Q 002941 722 -----HGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-----ALGTLCAIE 790 (863)
Q Consensus 722 -----~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-----g~Gl~~~ie 790 (863)
.+. .++.++.+++++.++++.+.+.+ .++..+..+.+++.+. +.+++.|.+.-+. ..+.++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~l~----~~L~~~~g~~~~~~~~~~~~~~~~~~~ 306 (362)
T 3ffr_A 232 LEKARVNQTPETPNAMNIFLLGKVTGDMLQIS-ADGIRKQTEEKAALIN----TYIESSKVFSFGVEDAKLRSMTTIVAN 306 (362)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHH----HHHHHCSSEEESSSCGGGBCSSEEEEE
T ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHH----HHHHHccCceeccCChhhcCCceEEEe
Confidence 011 34567778888888888775443 3444444444555443 3344555443222 235566677
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+.. . ..++.+.|.++||.+++. ++.+|+.+...++++++++++++|++.+
T Consensus 307 ~~~-~---------~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 307 TTM-L---------PGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ESS-C---------HHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCC-C---------HHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 654 2 567899999999999863 3789999888889999999999998753
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-13 Score=151.84 Aligned_cols=325 Identities=9% Similarity=0.042 Sum_probs=190.4
Q ss_pred ccccccCCCC-CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHH
Q 002941 407 SWWTQGPDAT-LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (863)
Q Consensus 407 g~~~~~lGh~-~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~ 485 (863)
|+|+.+++.. -+|++.+|+.+++++..+ +..+...++.++|+++++. +.++|++||++|++.|++.+ + +
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~al~~~-~-~ 71 (390)
T 3b8x_A 2 HMINYPLASSTWDDLEYKAIQSVLDSKMF-----TMGEYVKQYETQFAKTFGS---KYAVMVSSGSTANLLMIAAL-F-F 71 (390)
T ss_dssp ---CBCSCCCCCCHHHHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T-S
T ss_pred CceeccCCCCCCCHHHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-H-h
Confidence 3454444431 368999999999887432 2467888999999999984 57899999999999999876 2 1
Q ss_pred HhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc
Q 002941 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (863)
Q Consensus 486 ~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (863)
+...+... ..+||+...+||+........ |.. +..++..
T Consensus 72 ~~~~~~~~------------g~~Vi~~~~~~~~~~~~~~~~-g~~----------------------------~~~~~~~ 110 (390)
T 3b8x_A 72 TKKPRLKK------------GDEIIVPAVSWSTTYYPLQQY-GLR----------------------------VKFVDID 110 (390)
T ss_dssp SSSCSCCT------------TCEEEEESSSCHHHHHHHHHT-TCE----------------------------EEEECBC
T ss_pred hhhcCCCC------------cCEEEECCCCcHHHHHHHHHc-CCE----------------------------EEEEecC
Confidence 11111101 257999999999876543321 100 0001110
Q ss_pred chhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
.. .+ .-| .+.+++.+. +++.+|++... .| .. ..+++
T Consensus 111 ~~------------------~~--~~d--------~~~l~~~i~--------~~~~~v~~~~~-~g---~~----~~~~~ 146 (390)
T 3b8x_A 111 IN------------------TL--NID--------IESLKEAVT--------DSTKAILTVNL-LG---NP----NNFDE 146 (390)
T ss_dssp TT------------------TC--SBC--------HHHHHHHCC--------TTEEEEEEECG-GG---CC----CCHHH
T ss_pred cc------------------cc--CcC--------HHHHHHHhC--------cCCeEEEEECC-cc---Ch----hhHHH
Confidence 00 00 001 244555553 24556665332 22 22 23999
Q ss_pred HHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCC--CceeeeccH-HHHHhhh---cCC--cc
Q 002941 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI--PLAATLATN-AVFDSFV---GDS--KL 717 (863)
Q Consensus 646 Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~--Pigav~~~~-~i~~~l~---~~~--~~ 717 (863)
|.++|++||++||+||+|+ +|.. +....+|+.+|+.+++|..+.++. ..|++++++ ++.+.+. ..+ +.
T Consensus 147 i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~ 222 (390)
T 3b8x_A 147 INKIIGGRDIILLEDNCES-MGAT---FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRN 222 (390)
T ss_dssp HHHHHTTSCCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTT
T ss_pred HHHHHHHcCCEEEEECcCc-ccCE---ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999996 3222 223467788999998875443211 246677665 6655432 111 00
Q ss_pred -----------------ce---eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 002941 718 -----------------KA---LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (863)
Q Consensus 718 -----------------~~---~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v 777 (863)
.. ...++++..+++.++++++.|+.++ ++.++..++.+++. +.+.+.|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~--------~~L~~~~~~ 292 (390)
T 3b8x_A 223 LPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFL--------DKFKDHPYL 292 (390)
T ss_dssp SCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHTTCSSE
T ss_pred ccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHhcCCCCc
Confidence 00 0023455688999999999887664 23334333333333 234445543
Q ss_pred eEe----cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-----------------------
Q 002941 778 QRV----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G----------------------- 823 (863)
Q Consensus 778 ~~v----rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g----------------------- 823 (863)
.-. +....++.+.+.... . .....+.+.|.++||.+++. .
T Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~---~---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (390)
T 3b8x_A 293 DVQQETGESSWFGFSFIIKKDS---G---VIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDK 366 (390)
T ss_dssp EECCCCSBCCCCEEEEEECTTS---C---CCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHH
T ss_pred ccCCCCCCcccEEEEEEecCcC---c---ccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhc
Confidence 211 112233555554210 0 01457888899999988741 0
Q ss_pred CEEEEecCCCCcHHHHHHHHHHH
Q 002941 824 NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 824 ~~lr~~ppl~~t~eeid~~v~~L 846 (863)
..+|+.....+|++|+++++++|
T Consensus 367 ~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 367 NGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HEEEEECCSSCCHHHHHHHHHHT
T ss_pred CEEEeeCCCCCCHHHHHHHHHhh
Confidence 15788877889999999999876
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-14 Score=161.06 Aligned_cols=285 Identities=14% Similarity=0.094 Sum_probs=178.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +..++++||++|+..+++..++ .| ..||+....|++.
T Consensus 111 ~~~~~~~~l~~~lA~l~g~---~~~v~~~sG~~Ai~~al~~l~~---------~G------------d~Vi~~~~~y~~~ 166 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALVP---------AG------------GHIVTTTDCYRKT 166 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHSC---------SS------------CEEEEETTSCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchhH
Confidence 4578888999999999874 4778888999999999985521 12 5789998888773
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
...+...- . ..+ +....+|. +|
T Consensus 167 -~~~~~~~~----~---------~~G-------------~~v~~v~~------------------------~d------- 188 (445)
T 1qgn_A 167 -RIFIETIL----P---------KMG-------------ITATVIDP------------------------AD------- 188 (445)
T ss_dssp -HHHHHHTG----G---------GGT-------------CEEEEECS------------------------SC-------
T ss_pred -HHHHHHHH----H---------HcC-------------CEEEEeCC------------------------CC-------
Confidence 32211000 0 000 00001110 11
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+.. +.+.+|++|++ ++..|.+.+ +++|.++|++||++||+||+|+.. ... ..+.
T Consensus 189 -~~~l~~ai~~-------~tv~lV~le~p-~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~-~~~-----~~~~ 249 (445)
T 1qgn_A 189 -VGALELALNQ-------KKVNLFFTESP-TNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP-LNQ-----KALA 249 (445)
T ss_dssp -HHHHHHHHHH-------SCEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTC-----CTTT
T ss_pred -HHHHHHHhcc-------CCCCEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----Cccc
Confidence 2456666642 34588999997 899998776 899999999999999999999522 211 2234
Q ss_pred CCCcEEE--eccccCCC-CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt--~sKgLggG-~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
..+|+++ ++|.++|+ ..++|++++++++++.+... ........+|..++.++..|+.+.. ..++..++.
T Consensus 250 ~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~------~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a 321 (445)
T 1qgn_A 250 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL------HHILGGALNPNAAYLIIRGMKTLHL--RVQQQNSTA 321 (445)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHGGGHHH--HHHHHHHHH
T ss_pred cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH------HHHhCCCCCHHHHHHHHHhHHHHHH--HHHHHHHHH
Confidence 5689987 68999864 24799999999998877531 1111223478877777777765521 123333334
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcE
Q 002941 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY 818 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~ 818 (863)
+++.+ .+.++|.|..+ +|.|.++.+++.... ..+..+...|...|+.
T Consensus 322 ~~l~~--------~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-------~~~~~~l~~l~~~~i~ 386 (445)
T 1qgn_A 322 LRMAE--------ILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-------LTTAKFVDALKIPYIA 386 (445)
T ss_dssp HHHHH--------HHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-------HHHHHHHHHCSSSEEC
T ss_pred HHHHH--------HHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-------HHHHHHHHhCCCceEe
Confidence 44443 34455554332 357899999996431 1244555555422221
Q ss_pred E----------Ee---------------c---CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 819 M----------RP---------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 819 ~----------~p---------------~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+ .| . .+.+|++.- .||+|.+++.|+++++.
T Consensus 387 ~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 387 PSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp SCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred ccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 11 1 268888643 57899999999998864
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=163.45 Aligned_cols=344 Identities=10% Similarity=0.040 Sum_probs=188.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc----cccCCCCCC-hHHHHHHHHHHhhc-CCCC----CCeEEE--e
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVY-EPALECAELLLQGV-GKGW----ASRAYF--S 467 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~----~~~~~~~~~-~~~~eLae~L~~~~-p~~~----~~~v~f--~ 467 (863)
..+|+..|... .++++|.+.+++.+++.++. ... ..|.. .-..+|.+.+++++ +... .++++| +
T Consensus 50 ~~i~l~~g~~~---d~~~~~~v~~av~~a~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t 125 (448)
T 3meb_A 50 KKVNLGVGAYR---DESGKPWILPAVKEAEAIISSDLSKYN-KEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQS 125 (448)
T ss_dssp TCEEESSCCCC---CTTSCCCCCHHHHHHHHHHHHCTTTTC-CSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CeEEeeccccc---CCCCCEechHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEEC
Confidence 35776664432 22245667777777744432 111 12222 22345666666655 4210 158999 9
Q ss_pred CChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce---ecCCCCCCCCCcCCcccCC
Q 002941 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGR 544 (863)
Q Consensus 468 ~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals---~t~~~~~~~~~~~~~~~~~ 544 (863)
++|++|++.++.+. .... .| .+|++...+|++....... ..|..
T Consensus 126 ~ggt~al~l~~~~~-~~~~------~g------------d~Vlv~~p~~~~~~~~~~~~~~~~G~~-------------- 172 (448)
T 3meb_A 126 LSGTGSLHIGFEFL-HLWM------PK------------AEFYMPSTTWPNHYGIYDKVFNKLKVP-------------- 172 (448)
T ss_dssp SHHHHHHHHHHHHH-HHHC------TT------------CCEEEESSCCTHHHHHHHHHHCTTTSC--------------
T ss_pred CcHHHHHHHHHHHH-HHhC------CC------------CEEEECCCCCHhHHHHHHhhHHhCCCe--------------
Confidence 99999999977655 2221 12 4689988888765332220 11100
Q ss_pred CcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 002941 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (863)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI 624 (863)
+..+++.+.. ..+ .-| .+.+++.+.+ .....+..++
T Consensus 173 --------------v~~~~~~~~~----------------~~~--~~d--------~e~l~~~l~~----~~~~~~~v~~ 208 (448)
T 3meb_A 173 --------------YKEYTYLRKD----------------GEL--EID--------FSNTKKDIQS----APEKSIFLFH 208 (448)
T ss_dssp --------------CEEECCBCTT----------------SCS--SBC--------HHHHHHHHHH----SCTTCEEEEE
T ss_pred --------------EEEEeccccc----------------cCC--CcC--------HHHHHHHHHh----CCCCcEEEEe
Confidence 0011110000 000 001 2455666653 1122344444
Q ss_pred EccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCc---EEEeccccC-CCCC
Q 002941 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPD---IACYGKLLT-GGVI 696 (863)
Q Consensus 625 vEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PD---ivt~sKgLg-gG~~ 696 (863)
..| ++..|.. ++.+.+++|.++|++||+++|+||++.+|+..+. .+....+ +..++ +.++||.++ .| +
T Consensus 209 ~~p--~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~ 284 (448)
T 3meb_A 209 ACA--HNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYG-E 284 (448)
T ss_dssp SSS--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-G
T ss_pred CCC--CCCCCcC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcc-c
Confidence 556 7888865 5788899999999999999999999999976552 2333332 33456 347899987 57 8
Q ss_pred Cceee--ec---------cH----HHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-Chhh---HHhHHHHHH
Q 002941 697 PLAAT--LA---------TN----AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQT---NHNIIPERR 757 (863)
Q Consensus 697 Pigav--~~---------~~----~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l---~~~l~~~~~ 757 (863)
++|++ ++ ++ ++++.+.. .....+...+.++++++.++|+..+ ..+| .++++++.+
T Consensus 285 RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 358 (448)
T 3meb_A 285 RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL------QIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIH 358 (448)
T ss_dssp CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeeeccccccccCCHHHHHHHHHHHHH------HHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 99997 55 45 55555442 1122334556677777777665211 0122 334444444
Q ss_pred HHHHHHHHHHHHHHhcCCC------eeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecCCEEEEe
Q 002941 758 ILRELWDLELIQQISSHRT------VQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLGNVIYLM 829 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~------v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g~~lr~~ 829 (863)
.+++.+.+.+.+. ..+. +..+... |++..+.+. .+++..+ .++||++.|+.. |+.
T Consensus 359 ~~r~~l~~~L~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~ll~~~gV~v~~G~g--Ris 421 (448)
T 3meb_A 359 RMRSLLHASLAKR--KTPGPGSKGTWDHILTAIGMFTFTGLT-------------PEHVDYLKEKWSIYLVKAGG--RMS 421 (448)
T ss_dssp HHHHHHHHHHHHT--TCCCSTTTCCCTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEEECSGGG--EEE
T ss_pred HHHHHHHHHHHhh--CCCCcCcccccceeCCCceEEEecCCC-------------HHHHHHHHHhCCEEEeCCCc--EEE
Confidence 5555444433221 1122 2222233 333333221 1344444 567999998433 555
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
. ..+++++|++++++|.+++++
T Consensus 422 ~-a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 422 M-CGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp G-GGCCTTTHHHHHHHHHHHHHH
T ss_pred E-ecCCHHHHHHHHHHHHHHHHh
Confidence 3 245778899999999998874
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=160.02 Aligned_cols=335 Identities=12% Similarity=0.011 Sum_probs=188.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCC-ChHHHHHHHHHHhhc-CCCC----CCeEEE--eCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV-GKGW----ASRAYF--SDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~-p~~~----~~~v~f--~~SGS 471 (863)
..+|+.+|. +++...+|.+.+++.++.....+ .+. ..-..+|.+.+++++ +... .+++.+ +++|+
T Consensus 42 ~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~----~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ 114 (409)
T 4eu1_A 42 RKVNLSIGV---YRDDADQPFVLECVKQATLGTNM----DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGT 114 (409)
T ss_dssp SCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCC----CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHH
T ss_pred CceeeeeeE---EECCCCCEeecHHHHhcCccccc----cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccch
Confidence 567776543 22333568888888877222111 121 122346666666654 2110 145644 99999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+|++.+..++ +.+. ++ ..+|++...+|++........ |..
T Consensus 115 ga~~~~~~~~-~~~~-------~~----------gd~Vlv~~p~y~~~~~~~~~~-g~~--------------------- 154 (409)
T 4eu1_A 115 GALRIGGDLL-NRFV-------AN----------CNRIYGPDVGYPNHESIFAKA-GME--------------------- 154 (409)
T ss_dssp HHHHHHHHHG-GGTS-------SS----------CCEEEEESSCCTHHHHHHHHT-TCE---------------------
T ss_pred HHHHHHHHHH-HHhc-------CC----------CCEEEEeCCCcHhHHHHHHHc-CCe---------------------
Confidence 9999988766 3221 10 157999999887764332221 100
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-Eccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVH 630 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvI-vEPViq 630 (863)
+..++..+.. .+ ..| .+.+++.+++ .+....+++ ..| +
T Consensus 155 -------~~~~~~~~~~-----------------~~--~~d--------~~~l~~~l~~-----~~~~~~~i~~~~p--~ 193 (409)
T 4eu1_A 155 -------LTPYSYYDPA-----------------TK--GLN--------LAGMLECLDK-----APEGSVILVHACA--H 193 (409)
T ss_dssp -------EEEECCEETT-----------------TT--EEC--------HHHHHHHHHH-----SCTTCEEEEESSS--C
T ss_pred -------EEEEEeecCc-----------------CC--cCc--------HHHHHHHHHh-----CCCCcEEEEECCC--C
Confidence 0111110000 00 011 2456666653 123344454 566 7
Q ss_pred cCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhh-cCCCCcEE---EeccccC-CCCCCceee-
Q 002941 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL-LGCVPDIA---CYGKLLT-GGVIPLAAT- 701 (863)
Q Consensus 631 g~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~-~gv~PDiv---t~sKgLg-gG~~Pigav- 701 (863)
+..|.+ .+.+.+++|.++|++||+++|+||++.+|+..+. ...... .+..++++ +|||.++ .| +++|++
T Consensus 194 NPtG~~-~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~ 271 (409)
T 4eu1_A 194 NPTGVD-PTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALH 271 (409)
T ss_dssp TTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEE
T ss_pred CCCCCC-CCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEE
Confidence 888854 5778899999999999999999999999876652 233332 35566755 7899997 67 899995
Q ss_pred --eccHH----HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-Chhh---HHhHHHHHHHHHHHHHHHHHHHH
Q 002941 702 --LATNA----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQT---NHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 702 --~~~~~----i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l---~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+.+++ +++.+.. .....+++.++++++++.++|+... .++| .+++++..+..++.+.+. +
T Consensus 272 ~v~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----L 341 (409)
T 4eu1_A 272 ISTASAEEAKRLVSQLAL------LIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE----L 341 (409)
T ss_dssp EECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred EEeCCHHHHHHHHHHHHH------HHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 67777 5554432 1123456667888888888877321 0112 233333344444444333 3
Q ss_pred hcCCC---eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHH
Q 002941 772 SSHRT---VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 772 ~~~p~---v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
.+.+. +..+...|.++.+ .+.. ..++..++ ++||++.|.+ |+.. ..++++++++++++|.
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~ll~~~gv~v~p~~---Ri~~-~~~~~~~i~~~~~~l~ 405 (409)
T 4eu1_A 342 KACGSVHDWSHIERQVGMMAY--TGLT----------REQVELLRSEYHIYMTLNG---RAAV-SGLNSTNVEYVSQAIH 405 (409)
T ss_dssp HHTTCCSCCHHHHHSCSSEEE--CCCC----------HHHHHHHHHHHCEECCTTC---EEEG-GGCCTTTHHHHHHHHH
T ss_pred HhcCCCCCcceecCCceEEEE--eCCC----------HHHHHHHHHcCCEEEcCCC---EEEE-EecCHhhHHHHHHHHH
Confidence 33321 2222333433333 1111 12345555 6799999864 4543 3567788999999998
Q ss_pred HHH
Q 002941 848 QRL 850 (863)
Q Consensus 848 ~~l 850 (863)
+++
T Consensus 406 ~~l 408 (409)
T 4eu1_A 406 NVT 408 (409)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=167.09 Aligned_cols=288 Identities=11% Similarity=0.072 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
.++...+++++|+++.+ .+.+++++||++|+..+++++ + .| .+||+....||+..
T Consensus 131 g~~~~~~l~~~la~~~g---~~~~i~~~sGt~al~~~l~~~-~---------~G------------d~Vi~~~~~y~~~~ 185 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDK---ADRAFCFTSGMAALSAVTHLI-K---------NG------------EEIVAGDDVYGGSD 185 (464)
T ss_dssp CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHTTS-C---------TT------------CEEEEESSCCHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHh-C---------CC------------CEEEEECCCchhHH
Confidence 45567788888988887 358888999999998777532 1 12 57999999998752
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
. .+... .+ .. |...+.+|. .|
T Consensus 186 ~-~~~~~----~~---------~~-------------G~~v~~v~~------------------------~d-------- 206 (464)
T 1ibj_A 186 R-LLSQV----VP---------RS-------------GVVVKRVNT------------------------TK-------- 206 (464)
T ss_dssp H-HHHHT----SG---------GG-------------TCEEEEECT------------------------TS--------
T ss_pred H-HHHHH----HH---------Hc-------------CCEEEEeCC------------------------CC--------
Confidence 1 11000 00 00 000011110 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.+++.+. +++.+|+++.. ++..|.+.+ +++|.++|++||+++|+||+|+. |.... ..+ +
T Consensus 207 ~~~l~~~i~--------~~tk~v~l~~p-~NptG~v~~----l~~i~~la~~~gi~livDea~~~-g~~~~--~~~-~-- 267 (464)
T 1ibj_A 207 LDEVAAAIG--------PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS-PVLSR--PLE-L-- 267 (464)
T ss_dssp HHHHHHHCC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-TTTCC--GGG-T--
T ss_pred HHHHHHHhc--------cCceEEEEeCC-CCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc-cccCC--hhh-c--
Confidence 234555552 35789999997 899998875 99999999999999999999952 22111 112 3
Q ss_pred CCcEE--EeccccCC--CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 681 VPDIA--CYGKLLTG--GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 681 ~PDiv--t~sKgLgg--G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
.+|++ +++|.++| | +++|+++++ +++++.+... ........+|+++++++++|+.+. ...++..++
T Consensus 268 ~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~~------~~~~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~ 338 (464)
T 1ibj_A 268 GADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYFL------QNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQEN 338 (464)
T ss_dssp TCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHHH------HHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred CCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHHH------HHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHH
Confidence 47887 57999986 7 789999998 4787776531 111234457888888888876432 112233333
Q ss_pred HHHHHHHHHHH------HHHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---
Q 002941 756 RRILRELWDLE------LIQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--- 822 (863)
Q Consensus 756 ~~~l~~~l~~~------l~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--- 822 (863)
...+.+++.+. +.+.+.++|.+. ..+|.|.++.+++... .....+.+.|...||.++++
T Consensus 339 ~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~--------~~~~~~~~~L~~~gi~v~~G~~~ 410 (464)
T 1ibj_A 339 ARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV--------ALSKHLVETTKYFSIAVSFGSVK 410 (464)
T ss_dssp HHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH--------HHHHHHHHHCSSSEECSCCCSSS
T ss_pred HHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH--------HHHHHHHHhcCcceEeecCCCCc
Confidence 33343333211 001122233221 1245688999988421 12345777776666655432
Q ss_pred -------------------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 823 -------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 823 -------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+.+|+.+.. |+++++++.|++++++
T Consensus 411 sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 411 SLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred eeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 2578998765 8899999999988754
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-13 Score=152.82 Aligned_cols=317 Identities=15% Similarity=0.080 Sum_probs=186.7
Q ss_pred cHHHHHHHHHHHHhcccc-c-CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 418 QIELARDMGYTAARFGHV-M-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~-~-~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
+|++.+|+.+++++..+. . ...+..+...+++++|+++++. +.++|++||++|++.+++.+ + . + .|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~i~~~~gt~al~~~~~~~-~-~----~--~g- 82 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV---PYCVPTTSGSTALMLALEAL-G-I----G--EG- 82 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T-C----C--TT-
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C----C--Cc-
Confidence 589999999999874322 1 1112345588999999999873 47888999999999999876 1 0 0 12
Q ss_pred cCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc-hhhhhhcc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVE 574 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~ 574 (863)
.+||+...+||+........ |.. +..++... .+
T Consensus 83 -----------d~Vl~~~~~~~~~~~~~~~~-g~~----------------------------~~~~~~~~~~~------ 116 (418)
T 2c81_A 83 -----------DEVIVPSLTWIATATAVLNV-NAL----------------------------PVFVDVEADTY------ 116 (418)
T ss_dssp -----------CEEEEESSSCTHHHHHHHHT-TCE----------------------------EEEECBCTTTC------
T ss_pred -----------CEEEECCCccHhHHHHHHHc-CCE----------------------------EEEEecCCCCC------
Confidence 57999999999875443221 100 00111100 00
Q ss_pred ccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC
Q 002941 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (863)
Q Consensus 575 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g 654 (863)
.-| .+.+++.+. .++.+|++... .|...+ +++|.++|++||
T Consensus 117 ---------------~~d--------~~~l~~~i~--------~~~~~v~~~~~----~G~~~~----~~~i~~~~~~~~ 157 (418)
T 2c81_A 117 ---------------CID--------PQLIKSAIT--------DKTKAIIPVHL----FGSMAN----MDEINEIAQEHN 157 (418)
T ss_dssp ---------------SBC--------HHHHGGGCC--------TTEEEECCBCC----TTCCCC----HHHHHHHHHHTT
T ss_pred ---------------CcC--------HHHHHHhhC--------CCCeEEEEeCC----cCCccc----HHHHHHHHHHCC
Confidence 011 123333331 24667776543 354433 899999999999
Q ss_pred CeEEEecccccccc-cCCcchhhhcCCCCcEE--Ee--ccccCCCCCCceeeecc-HHHHHhhhc---CCccc-------
Q 002941 655 IPVIFDEVFTGFWR-LGVETTADLLGCVPDIA--CY--GKLLTGGVIPLAATLAT-NAVFDSFVG---DSKLK------- 718 (863)
Q Consensus 655 ilLI~DEV~TGfGR-tG~~~a~e~~gv~PDiv--t~--sKgLggG~~Pigav~~~-~~i~~~l~~---~~~~~------- 718 (863)
+++|+||+|+.+.. .|. .++..+|++ +| +|.+++| .+|+++++ +++++.+.. .....
T Consensus 158 ~~li~D~a~~~~~~~~~~-----~~~~~~~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T 2c81_A 158 LFVIEDCAQSHGSVWNNQ-----RAGTIGDIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL 230 (418)
T ss_dssp CEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred CEEEEECcccccCccCCE-----ecccccceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 99999999976542 222 123334665 45 8999876 78888884 787766542 11000
Q ss_pred --eee--------cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-cccc---
Q 002941 719 --ALL--------HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALG--- 784 (863)
Q Consensus 719 --~~~--------~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-rg~G--- 784 (863)
.+. .+..+..+++.++.+.+.++.++ ++.++.. .+.+.+ .+.+.+.|.+.-. ...|
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~----~~~~~l----~~~L~~~~g~~~~~~~~~~~~ 300 (418)
T 2c81_A 231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELD--DKNAIRE----KNAMFL----NDALSKIDGIKVMKRPPQVSR 300 (418)
T ss_dssp CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHH----HHHHHH----HHHHTTSTTEEECCCCTTEEE
T ss_pred ccchhhccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHH----HHHHHH----HHHhccCCCcccCCCCCCCcc
Confidence 011 11222346666655555554332 1222333 333332 3334455544322 1222
Q ss_pred ---eEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcE---EEec-------------------------------C---
Q 002941 785 ---TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVY---MRPL-------------------------------G--- 823 (863)
Q Consensus 785 ---l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~---~~p~-------------------------------g--- 823 (863)
.++.+.+.+... .. .....+.+.|.++ ||. +++. +
T Consensus 301 ~~~~~~~~~~~~~~~-~~---~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (418)
T 2c81_A 301 QTYYGYVFRFDPVKF-GG---LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYP 376 (418)
T ss_dssp CCCSEEEEEECGGGT-TT---CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCH
T ss_pred cccEEEEEEEccccc-cc---cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCCh
Confidence 245566653100 00 0146788999999 999 7642 1
Q ss_pred -------CEEEEecCCCC-cHHHHHHHHHHHHHHHHH
Q 002941 824 -------NVIYLMCGPCS-SPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 824 -------~~lr~~ppl~~-t~eeid~~v~~L~~~l~~ 852 (863)
+.+|+.++..+ |+||++.++++|++++++
T Consensus 377 ~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 377 VSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 47999888888 999999999999988764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=153.56 Aligned_cols=283 Identities=10% Similarity=0.072 Sum_probs=177.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +.+++++||++|++.|++ .++ .| .+||+....|||.
T Consensus 52 ~~~~~~~~lr~~la~~~g~---~~~i~~~sGt~a~~~al~-~~~---------~g------------d~Vi~~~~~y~~~ 106 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA---QYGLAFSSGSATTATILQ-SLP---------QG------------SHAVSIGDVYGGT 106 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHH-TSC---------SS------------CEEEEESSCCHHH
T ss_pred CCChhHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHH-HcC---------CC------------CEEEEeCCCchHH
Confidence 4567788999999999874 478888899999999998 421 12 5799999988874
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
. ..+... .. ..+. . + ..+| .. .
T Consensus 107 ~-~~~~~~----~~---------~~G~--~---------v--~~v~------------------------------~~-d 128 (393)
T 1n8p_A 107 H-RYFTKV----AN---------AHGV--E---------T--SFTN------------------------------DL-L 128 (393)
T ss_dssp H-HHHHHT----ST---------TTCS--C---------C--EEES------------------------------SH-H
T ss_pred H-HHHHHH----HH---------HcCc--E---------E--EEeC------------------------------CC-h
Confidence 2 211100 00 0000 0 0 0011 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc----CCeEEEecccccccccCCcchh
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTA 675 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~----gilLI~DEV~TGfGRtG~~~a~ 675 (863)
+.+++.+. +++.+|++|.+ +++.|.+.+ +++|.++|++| |++||+||+|+++.+ +....
T Consensus 129 --~~l~~~i~--------~~t~lv~~~~~-~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~~~~- 191 (393)
T 1n8p_A 129 --NDLPQLIK--------ENTKLVWIETP-TNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPLN- 191 (393)
T ss_dssp --HHHHHHSC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGGG-
T ss_pred --HHHHHhcc--------cCceEEEEECC-CCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CCHHH-
Confidence 23455442 35788999997 899998876 99999999999 999999999986644 33322
Q ss_pred hhcCCCCcEE--EeccccCCCCCCc-eeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 676 e~~gv~PDiv--t~sKgLggG~~Pi-gav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+ .+|++ +++|.+++.-+++ |+++++ +++++.+.... .......+|..++++.++++.+. ...++
T Consensus 192 --~--~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~------~~~g~~~~~~~~~~~~~~l~~~~--~~~~~ 259 (393)
T 1n8p_A 192 --F--GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ------NAIGAIPSPFDAWLTHRGLKTLH--LRVRQ 259 (393)
T ss_dssp --G--TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred --c--CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH------HhcCCCCCHHHHHHHHhccchHH--HHHHH
Confidence 2 37887 6789998633788 788875 78888775311 11123346888887777776542 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-eeEe------------------cc-c-ceEEEEEEccCCcCCCCchHHHHHHHH
Q 002941 752 IIPERRILRELWDLELIQQISSHRT-VQRV------------------VA-L-GTLCAIELQAAGCNAGYGSLYAASLLK 810 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~-v~~v------------------rg-~-Gl~~~iel~~~~~~~~~~~~~~~~l~~ 810 (863)
..++.+.+.+ .+.+++. +..+ +| . |.++.+++.... .....+..
T Consensus 260 ~~~~~~~l~~--------~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-------~~~~~~l~ 324 (393)
T 1n8p_A 260 AALSANKIAE--------FLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-------EAASKFAS 324 (393)
T ss_dssp HHHHHHHHHH--------HHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-------HHHHHHHH
T ss_pred HHHHHHHHHH--------HHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-------HHHHHHHh
Confidence 4444444443 3334443 3322 34 6 889999996421 12445555
Q ss_pred HHHHCCcEE----------Ee---------------c---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 811 KLREDGVYM----------RP---------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 811 ~l~e~GV~~----------~p---------------~---g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.|...|+.+ .| . .+.+|++.....++++|+.+.++|+++
T Consensus 325 ~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 325 STRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred hCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 543323211 11 0 268999988888888888888877653
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-14 Score=157.69 Aligned_cols=289 Identities=9% Similarity=0.055 Sum_probs=177.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
+.++...+|.++|+++.+. +..++++||++|+..+++ .++ .| .+||+....|||.
T Consensus 64 ~~~p~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~-l~~---------~g------------d~Vl~~~~~y~~~ 118 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGA---KYCLAFASGLAATVTITH-LLK---------AG------------DQIICMDDVYGGT 118 (403)
T ss_dssp --CHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHT-TSC---------TT------------CEEEEESSCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHH-HhC---------CC------------CEEEEeCCCcchH
Confidence 4567788999999999874 467777899999999887 421 12 5799999999885
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
......+.. .. |.....+|. +|
T Consensus 119 ~~~~~~~~~--------------~~-------------G~~v~~v~~------------------------~d------- 140 (403)
T 3cog_A 119 NRYFRQVAS--------------EF-------------GLKISFVDC------------------------SK------- 140 (403)
T ss_dssp HHHHHHTGG--------------GG-------------TCEEEEECT------------------------TS-------
T ss_pred HHHHHHHHH--------------Hc-------------CCEEEEECC------------------------CC-------
Confidence 321110000 00 000011110 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC-CeEEEecccccccccCCcchhhhc
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g-ilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. +++.+|++|.. ++..|.+.+ +++|.++|++|| +++|+||+++++ ..+.. +
T Consensus 141 -~~~l~~~i~--------~~t~~v~~~~p-~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~-~~~~~-----~ 200 (403)
T 3cog_A 141 -IKLLEAAIT--------PETKLVWIETP-TNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSP-YFQRP-----L 200 (403)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCT-TTCCT-----T
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccc-ccCCc-----c
Confidence 234555552 35778889987 899998876 999999999999 999999999765 22222 2
Q ss_pred CCCCcEE--EeccccCC-CCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHH
Q 002941 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (863)
Q Consensus 679 gv~PDiv--t~sKgLgg-G~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~ 754 (863)
+..+|++ +++|.++| |-.++|+++++ +++++.+.. .....+...+|+.++++++.|+.+. ...++..+
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~------~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~ 272 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF------LQNSLGAVPSPIDCYLCNRGLKTLH--VRMEKHFK 272 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH------HHHhcCCCCCHHHHHHHHhhhhHHH--HHHHHHHH
Confidence 2457888 67899985 32578999984 788887753 1233455678999988888887542 12344445
Q ss_pred HHHHHHHHHHHH------HHHHHhcCCCee----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--
Q 002941 755 ERRILRELWDLE------LIQQISSHRTVQ----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-- 822 (863)
Q Consensus 755 ~~~~l~~~l~~~------l~~~~~~~p~v~----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-- 822 (863)
+...+.+++.+. +...+.++|.+. ..++.|.|+.+++... .....+.+.+.||+.+..
T Consensus 273 n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~l~~~~i~~~~~s~ 342 (403)
T 3cog_A 273 NGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIFLKNLKLFTLAESL 342 (403)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHHHHhCCcceEccCC
Confidence 555554433211 000112223211 1235688999987532 123445566778765420
Q ss_pred -----------------------------CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 823 -----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 823 -----------------------------g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
.+.+|++.....++++|+.+.++|+++
T Consensus 343 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 343 GGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp SSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 368999987766766666666665543
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=157.65 Aligned_cols=345 Identities=12% Similarity=0.044 Sum_probs=194.3
Q ss_pred cHHHHHHHHHHHHhccc--c-c--CCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccc
Q 002941 418 QIELARDMGYTAARFGH--V-M--FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~--~-~--~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~ 491 (863)
.+++++++.+++.+... . . ...+..+...++++.+.+..+.+ ..+.++++++|++|+..+++.... +
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~- 180 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR------N- 180 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC------S-
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC------C-
Confidence 56788888888877521 1 1 11122244555666665443311 136899999999999999987620 0
Q ss_pred cccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhh
Q 002941 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (863)
Q Consensus 492 ~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (863)
.| ..|++...+|++........+. . +..+++...
T Consensus 181 -~g------------d~Vlv~~p~y~~~~~~~~~~g~-~----------------------------~~~~~~~~~---- 214 (500)
T 3tcm_A 181 -EK------------DGILVPIPQYPLYSASIALHGG-A----------------------------LVPYYLNES---- 214 (500)
T ss_dssp -TT------------EEEEEEESCCTHHHHHHHHTTC-E----------------------------EEEEECBTT----
T ss_pred -CC------------CEEEEeCCCcHhHHHHHHHcCC-E----------------------------EEEEecccc----
Confidence 11 5789888888876543322211 0 001111100
Q ss_pred hccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
..| ..| .+.+++.+.+. .....++. .+++.| ++..|.+ .+.+.+++|.++|
T Consensus 215 -------------~~~--~~d--------~~~l~~~l~~~--~~~~~~~k~ivl~~p--~NPtG~~-~s~~~l~~i~~la 266 (500)
T 3tcm_A 215 -------------TGW--GLE--------TSDVKKQLEDA--RSRGINVRALVVINP--GNPTGQV-LAEENQYDIVKFC 266 (500)
T ss_dssp -------------TTS--BCC--------HHHHHHHHHHH--HHTTCEEEEEEEESS--CTTTCCC-CCHHHHHHHHHHH
T ss_pred -------------cCC--CCC--------HHHHHHHHHHH--HhcCCCceEEEEECC--CCCCccc-CCHHHHHHHHHHH
Confidence 000 012 23455555420 00112444 445555 7888854 4677899999999
Q ss_pred HHcCCeEEEecccccccccC--Ccchh----hhcCC-CC--c-EE--Eecccc-C-CCCCCceeeec---cHHHHHhhhc
Q 002941 651 QNRKIPVIFDEVFTGFWRLG--VETTA----DLLGC-VP--D-IA--CYGKLL-T-GGVIPLAATLA---TNAVFDSFVG 713 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG--~~~a~----e~~gv-~P--D-iv--t~sKgL-g-gG~~Pigav~~---~~~i~~~l~~ 713 (863)
++||+++|+||++.++...+ ....+ ..++. .. + ++ +|||++ | .| +++|++++ ++++++.+..
T Consensus 267 ~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~ 345 (500)
T 3tcm_A 267 KNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYK 345 (500)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHH
T ss_pred HHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHH
Confidence 99999999999998764432 12221 22332 22 2 33 789999 4 47 89999988 8999888764
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhc-Ch----hhHH---hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccce
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DP----QTNH---NIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~----~l~~---~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl 785 (863)
....+++.++++++++.++|+-.+ .+ .+.+ .+.+..+..++ .+.+.+.+.|.+..+...|.
T Consensus 346 -------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~l~~~L~~~~g~~~~~~~g~ 414 (500)
T 3tcm_A 346 -------IASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAK----ALEHAFNKLEGITCNEAEGA 414 (500)
T ss_dssp -------HHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTSTTEECCCCCBT
T ss_pred -------HHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCcEEecCCeE
Confidence 123455678888888887776211 00 0111 22222222222 23344555666655555554
Q ss_pred EEE-EEEccCCcC----CCCchHHHHHH-HHHHHHCCcEEEec--------CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 786 LCA-IELQAAGCN----AGYGSLYAASL-LKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 786 ~~~-iel~~~~~~----~~~~~~~~~~l-~~~l~e~GV~~~p~--------g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
|+. +.+..+... ..........+ ...|.++||++.|+ .+.+|++.. ++++++++++++|.++++
T Consensus 415 ~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 415 MYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp TEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHH
T ss_pred EEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 443 333311100 00000001222 35566789999873 146888754 899999999999999998
Q ss_pred HHHHHH
Q 002941 852 EFDKVE 857 (863)
Q Consensus 852 ~l~~~~ 857 (863)
++.+.+
T Consensus 493 ~~~~~~ 498 (500)
T 3tcm_A 493 AFMSEY 498 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876543
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=156.57 Aligned_cols=299 Identities=9% Similarity=-0.005 Sum_probs=178.8
Q ss_pred CcHHHHHHHHHHHHh---cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEE---eCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~---~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f---~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
|+++|.+|+.++... +.......+......+|+++|+++++. +...+ ++||++|++.+++..++
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~---~~~~~~i~~~sGt~Ai~~al~al~~------- 105 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA---EAGLVRPQIISGTHAISTALFGILR------- 105 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC---SEECCBTTSCSHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC---CcccccceeeCHHHHHHHHHHHhCC-------
Confidence 578899988876322 222222334567788899999999874 34433 56999999999875521
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
+| .+||+..+..|+.+...+.+++. +++.+. . .|.....+|...
T Consensus 106 --~G------------d~Vl~~~~~~y~~~~~~~~l~g~--~~~~~~-----~-------------~G~~~~~v~~~~-- 149 (431)
T 3ht4_A 106 --PG------------DELLYITGKPYDTLEEIVGVRGK--GVGSFK-----E-------------YNIGYNAVPLTE-- 149 (431)
T ss_dssp --TT------------CEEEECSSSCCTTHHHHTTSSSC--SSSCSG-----G-------------GTCEEEECCBCT--
T ss_pred --CC------------CEEEEeCCCCchhHHHHHhhccc--ccchHH-----H-------------cCCEEEEeCCCC--
Confidence 12 57888887778877777766553 222110 0 011111222100
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
+...| .+.+++.+. .++.+|++|+..++..|. ..+...+++|.++|
T Consensus 150 -----------------~~~~d--------~e~l~~~l~--------~~tk~V~i~~sp~np~~~-~~~~~~l~~i~~la 195 (431)
T 3ht4_A 150 -----------------GGLVD--------FEAVAAAIH--------SNTKMIGIQRSKGYATRP-SFTISQIKEMIAFV 195 (431)
T ss_dssp -----------------TSSBC--------HHHHHHHCC--------TTEEEEEEECSCTTSSSC-CCCHHHHHHHHHHH
T ss_pred -----------------CCCcC--------HHHHHhhcC--------CCCeEEEEECCCCCCCCC-cCCHHHHHHHHHHH
Confidence 00012 244555553 367889999421445554 44777899999999
Q ss_pred HH--cCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCC-CCceeeeccHHHHHhhhcCCccceeecccC
Q 002941 651 QN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV-IPLAATLATNAVFDSFVGDSKLKALLHGHS 725 (863)
Q Consensus 651 ~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~-~Pigav~~~~~i~~~l~~~~~~~~~~~~~T 725 (863)
++ ||++||+||++..+...+.... +| .|++ +++|.++||+ .+.|++++++++++.+.... .....+.+
T Consensus 196 ~~~~~~~~livDea~~~~~~~~~~~~---~g--~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~--~~~~~g~~ 268 (431)
T 3ht4_A 196 KEIKPDVVVFVDNCYGEFIEEQEPCH---VG--ADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRL--TSPGIGAE 268 (431)
T ss_dssp HHHCTTCEEEEECTTCTTSSSCCGGG---TT--CSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHH--SCTTTTTS
T ss_pred HhhCCCCEEEEeCCChhhccCCCccc---cC--CeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHh--ccCCcccc
Confidence 99 9999999999987754443322 23 4665 6899998854 45678889999988875310 00112233
Q ss_pred CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHH
Q 002941 726 YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYA 805 (863)
Q Consensus 726 ~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~ 805 (863)
.+.++..+++++..++.+ +...++..++++++.+.|++... .-+|. ...++.+++++|++.+. ..+
T Consensus 269 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~---~v~p~-~~~~~~~li~~i~l~~~--------~~~ 334 (431)
T 3ht4_A 269 AGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGM---NTSPA-WNAPRTDLIQSVQFDDK--------DRM 334 (431)
T ss_dssp CSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTC---CEESC-TTSCCSSSCCEEECCCH--------HHH
T ss_pred cCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcC---EecCC-CCCCCccEEEEEEeCCH--------HHH
Confidence 333223234455555544 33456677777777765533211 11222 23466778999998643 246
Q ss_pred HHHHHHHHHCC
Q 002941 806 ASLLKKLREDG 816 (863)
Q Consensus 806 ~~l~~~l~e~G 816 (863)
.++++.|.+..
T Consensus 335 ~~~~~~l~~~~ 345 (431)
T 3ht4_A 335 IAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 78888888763
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-11 Score=143.21 Aligned_cols=325 Identities=14% Similarity=0.064 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHH----hhccccccccCCCccccccccEEEEecCCCccCc
Q 002941 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS----FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (863)
Q Consensus 445 ~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~----~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t 520 (863)
..++.++|+++++.+ .+.++|+++||+||..|++.+ |.++ +..|.. +. .+..|++... .|.+.
T Consensus 150 e~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~~a-r~~~~~~~~~~G~~-~~---------~~~~vl~s~~-~h~s~ 216 (515)
T 2jis_A 150 EEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVNLA-RYQRYPDCKQRGLR-TL---------PPLALFTSKE-CHYSI 216 (515)
T ss_dssp HHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHHHH-HHHHCTTHHHHCGG-GS---------CCEEEEEETT-SCTHH
T ss_pred HHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHHHH-HHHHhhHHhhcCcc-cc---------CCeEEEECCC-ccHHH
Confidence 455667788888743 358999999999999999998 4332 112210 00 0124555554 46665
Q ss_pred cccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHH
Q 002941 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (863)
Q Consensus 521 ~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 600 (863)
..++...+.. . ..+..++....+ .-|
T Consensus 217 ~~~~~~~g~g---------------~----------~~v~~v~~~~~~---------------------~~d-------- 242 (515)
T 2jis_A 217 QKGAAFLGLG---------------T----------DSVRVVKADERG---------------------KMV-------- 242 (515)
T ss_dssp HHHHHHTTSC---------------G----------GGEEEECBCTTS---------------------CBC--------
T ss_pred HHHHHHcCCC---------------C----------CcEEEEecCCCC---------------------cCC--------
Confidence 5444432210 0 011122221100 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC
Q 002941 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (863)
Q Consensus 601 ~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (863)
.+.|++.+++. ...+.++++|++... .+..|.+.+ +++|.++|++||++|++|++++|+......+.....|+
T Consensus 243 ~~~L~~~i~~~--~~~g~~~~~Vv~~~~-~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~ 315 (515)
T 2jis_A 243 PEDLERQIGMA--EAEGAVPFLVSATSG-TTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315 (515)
T ss_dssp HHHHHHHHHHH--HHTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG
T ss_pred HHHHHHHHHHH--HhCCCCcEEEEEeCC-CCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCC
Confidence 23455555320 011235778888775 778887766 99999999999999999999988766555444444466
Q ss_pred -CCcEEEe--ccccCCCCCCceeeeccHH--HHHhhhc-CCccc----e----eecc------cCCCccHHHHHHHHHHH
Q 002941 681 -VPDIACY--GKLLTGGVIPLAATLATNA--VFDSFVG-DSKLK----A----LLHG------HSYSAHALGCAAAAKSI 740 (863)
Q Consensus 681 -~PDivt~--sKgLggG~~Pigav~~~~~--i~~~l~~-~~~~~----~----~~~~------~T~~~~pla~AAalAaL 740 (863)
.+|++++ .|.++++ .++|+++++++ +++.... ..... . .+.. .+.....+++.++++++
T Consensus 316 ~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~l 394 (515)
T 2jis_A 316 QRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQ 394 (515)
T ss_dssp GGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHH
T ss_pred ccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHH
Confidence 7899988 8999877 58899998876 6553211 00000 0 0000 01111244444444444
Q ss_pred HHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcC---CCCc--h---HHHHHHHHH
Q 002941 741 KWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCN---AGYG--S---LYAASLLKK 811 (863)
Q Consensus 741 ~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~---~~~~--~---~~~~~l~~~ 811 (863)
. .++ ++++.+....+.+++.+ .+.+.|.+.-+. .....+.+.+...... .... . .....+.+.
T Consensus 395 g---~~g-~~~~~~~~~~~a~~l~~----~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~ 466 (515)
T 2jis_A 395 G---DQG-LERRIDQAFVLARYLVE----EMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKER 466 (515)
T ss_dssp H---HHH-HHHHHHHHHHHHHHHHH----HHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHH
T ss_pred h---HHH-HHHHHHHHHHHHHHHHH----HHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHH
Confidence 3 222 23344444444444433 334445432221 1233444444321100 0000 0 012347778
Q ss_pred HHHCCcEEEe----cC--CEEEEec-CCCCcHHHHHHHHHHHHHHHHH
Q 002941 812 LREDGVYMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 812 l~e~GV~~~p----~g--~~lr~~p-pl~~t~eeid~~v~~L~~~l~~ 852 (863)
|.++|+++.. .+ +.+|+++ +..+|++||++++++|++++++
T Consensus 467 l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 467 MVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8899976532 22 5899998 7889999999999999887643
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=157.08 Aligned_cols=201 Identities=12% Similarity=0.055 Sum_probs=127.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CCcchhhhcCCCCcEEEec--cccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVETTADLLGCVPDIACYG--KLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~~~a~e~~gv~PDivt~s--KgLggG~~ 696 (863)
+.+|++.+- +..|.+.+ +++|.++|++||++||+||+|++..+. |..+....+| +|+++.| |.++|+ .
T Consensus 147 ~~~v~~~~~--n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g--~Di~~~S~~K~l~~~-~ 217 (446)
T 2x3l_A 147 HKLVVLTYP--NYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ--ADYVVQSFHKTLPAL-T 217 (446)
T ss_dssp CCEEEEESS--CTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGT--CSEEEECHHHHSSSC-T
T ss_pred ceEEEEECC--CCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcC--CCEEEECCccccccc-c
Confidence 445555552 34777765 899999999999999999999762222 2222222333 7999876 998877 6
Q ss_pred CceeeeccHHHHH--hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 697 PLAATLATNAVFD--SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 697 Pigav~~~~~i~~--~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
++|++++++++++ .+... .....+.+.+...+++..++++.+++.+ .+++.+....+.+.+.+. ..
T Consensus 218 g~g~l~~~~~~i~~~~~~~~-----~~~~~~~s~~~~~~aal~~a~~~l~~~g-~~~~~~~~~~l~~~l~~~------g~ 285 (446)
T 2x3l_A 218 MGSVLYIHKNAPYRENIIEY-----LSYFQTSSPSYLIMASLESAAQFYKTYD-STLFFAKRAQLIECLENK------GF 285 (446)
T ss_dssp TCEEEEEETTCTTHHHHHHH-----HHHHSCSSCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH------TC
T ss_pred ccEEEEEcCCcCCHHHHHHH-----HHHHcCCCchHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHc------CC
Confidence 7899999887654 22210 1122345567777777777777775322 112333333344333222 11
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-ecCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+. ...+..+.+.+... ....+.+.|+++||.+. +..+.+|++++..+|++++ +++++|.++++.+
T Consensus 286 ~~~~--~~~~~~l~i~~~~~---------~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 286 EMLQ--VDDPLKLLIKYEGF---------TGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp EEEE--CSSTTEEEEECTTS---------CHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EECc--CCCCeEEEEEeCCc---------CHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 1111 11233455555311 14578889999999998 5558899999888899999 9999998887544
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-11 Score=139.68 Aligned_cols=218 Identities=11% Similarity=0.042 Sum_probs=129.9
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEec--cccCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACYG--KLLTGGV 695 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~s--KgLggG~ 695 (863)
++.+|++.-. .+..|.+.+ +++|.++|++||++|++|+++.|+......+.....|+ .+|+++++ |.++++
T Consensus 245 ~~~~V~~~~~-~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p- 318 (504)
T 2okj_A 245 VPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL- 318 (504)
T ss_dssp EEEEEEECBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-
T ss_pred CceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-
Confidence 5667777654 677787765 99999999999999999999987754333222333344 68999886 998877
Q ss_pred CCceeeeccH-HHHHhhh-cCCccceeeccc----------------CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 696 IPLAATLATN-AVFDSFV-GDSKLKALLHGH----------------SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 696 ~Pigav~~~~-~i~~~l~-~~~~~~~~~~~~----------------T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
+++|++++++ ++++... ....+ +..+. +...+++++.++++++. .++ ++++.+...
T Consensus 319 ~~~g~l~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g-~~~~~~~~~ 392 (504)
T 2okj_A 319 LQCSAILVKEKGILQGCNQMCAGY--LFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVG-FENQINKCL 392 (504)
T ss_dssp SCCEEEEESSTTHHHHHHCCCCSS--SCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHH-HHHHHHHHH
T ss_pred cceEEEEEECHHHHHHHhcCCCcc--ccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHH-HHHHHHHHH
Confidence 6899999876 4655321 11110 00010 11124666666665554 222 333344444
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEec---ccceEEEEEEccCCcCC-CCc-------hHHHHHHHHHHHHCCcE-EEe--c-
Q 002941 758 ILRELWDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNA-GYG-------SLYAASLLKKLREDGVY-MRP--L- 822 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~~vr---g~Gl~~~iel~~~~~~~-~~~-------~~~~~~l~~~l~e~GV~-~~p--~- 822 (863)
.+.+++ .+.+.+.|.+.-+. ..+.++.+......... ... ......+.+.|.++|++ +.+ .
T Consensus 393 ~~a~~l----~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~ 468 (504)
T 2okj_A 393 ELAEYL----YAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQG 468 (504)
T ss_dssp HHHHHH----HHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEET
T ss_pred HHHHHH----HHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEEC
Confidence 444443 33444555443321 34445555543211000 000 01245788899999964 432 2
Q ss_pred C--CEEEEecC-CCCcHHHHHHHHHHHHHHHHH
Q 002941 823 G--NVIYLMCG-PCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 823 g--~~lr~~pp-l~~t~eeid~~v~~L~~~l~~ 852 (863)
+ +.+|+++. ..+|++||++++++|++++++
T Consensus 469 ~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 469 DKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3 47899874 778999999999999887654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.1e-13 Score=147.63 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=120.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-
Q 002941 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL- 678 (863)
Q Consensus 603 ~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~- 678 (863)
.+++.+++ ...+..++++... ++..|.. .+.+.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 164 ~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~ 236 (401)
T 7aat_A 164 GAMEDISK-----IPEKSIILLHACA-HNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI 236 (401)
T ss_dssp HHHHHHTT-----SCTTCEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred HHHHHHHh-----CCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHH
Confidence 44556653 1234556666664 8888864 5788899999999999999999999998866542 2233222
Q ss_pred CCCCcE---EEeccccC-CCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh----
Q 002941 679 GCVPDI---ACYGKLLT-GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---- 747 (863)
Q Consensus 679 gv~PDi---vt~sKgLg-gG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---- 747 (863)
+..+++ .++||.++ .| +++|++++ +++..+.+...- .......+.+.+..+++++.+.++ +.+
T Consensus 237 ~~~~~~i~~~S~sK~~~~~G-~RiG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 310 (401)
T 7aat_A 237 EQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAEEAKRVESQL--KILIRPMYSNPPMNGARIASLILN---TPELRKE 310 (401)
T ss_dssp HTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHH--HHHHHHHHSSCCHHHHHHHHHHHH---CHHHHHH
T ss_pred hcCCcEEEEecCCccccccc-CceEEEEEEeCCHHHHHHHHHHH--HHHHHhccCCCChHHHHHHHHHhC---CHHHHHH
Confidence 334444 47899997 67 79999775 666433222100 001112223334444444444443 221
Q ss_pred ---hHHhHHHHHHHHHHHHHHHHHHHHhcCC---CeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 748 ---TNHNIIPERRILRELWDLELIQQISSHR---TVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 748 ---l~~~l~~~~~~l~~~l~~~l~~~~~~~p---~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
..++.++..+..++.+.+.+ .++. .+......| .+..+.+. ...+...+.++||++.
T Consensus 311 ~~~~~~~~~~~~~~~r~~l~~~L----~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ll~~~gi~v~ 374 (401)
T 7aat_A 311 WLVEVKGMADRIISMRTQLVSNL----KKEGSSHNWQHITDQIGMFCFTGLK------------PEQVERLTKEFSIYMT 374 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHTTCCSCCHHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhcCCCCCCceecCCcceEEecCCC------------HHHHHHHHHhCCEecc
Confidence 12333444444444443333 3331 122223333 33333221 2233344467899998
Q ss_pred ecCCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 821 PLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 821 p~g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+. +|+... .+++++|++++++|.+++
T Consensus 375 ~~---~Ris~~-~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 375 KD---GRISVA-GVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp TT---CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CC---CeEEec-cCChhhHHHHHHHHHHHh
Confidence 64 466543 355666999999998765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=143.47 Aligned_cols=346 Identities=12% Similarity=-0.022 Sum_probs=190.2
Q ss_pred cHHHHHHHHHHHHhccc-----ccCCCCCChHHHHHHHHHHhhcC-CC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 418 QIELARDMGYTAARFGH-----VMFPENVYEPALECAELLLQGVG-KG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~-----~~~~~~~~~~~~eLae~L~~~~p-~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
...+.+++.+++.+... +....+..+...++++.+.+..+ .. ..+.+++++++++|+..++++.. ..|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-----~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-----SGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-----CCC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-----CCC
Confidence 45667888877776431 11122233556677777776542 11 13689999999999999998652 111
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
.. .+..|++..-+|.+...... ..|. ..+++|...
T Consensus 178 d~------------~~d~Vlv~~p~y~~~~~~~~-~~g~------------------------------~~v~~~~~~-- 212 (498)
T 3ihj_A 178 GK------------SRTGVMIPIPQYPLYSAVIS-ELDA------------------------------IQVNYYLDE-- 212 (498)
T ss_dssp GG------------GSEEEEEEESCCTHHHHHHH-HTTC------------------------------EEEEEECBG--
T ss_pred CC------------CCCEEEEeCCCchhHHHHHH-HcCC------------------------------EEEEeeccc--
Confidence 00 01478888888876543322 2110 001111000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCceeCCHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fL~~Lrel 649 (863)
...| .-| .+.+++.+.+. ....++. .+++.| ++..|.+. +.+.+++|.++
T Consensus 213 -------------~~~~--~~d--------~~~le~~l~~~---~~~~~~k~i~l~np--~NPTG~v~-s~~~l~~i~~l 263 (498)
T 3ihj_A 213 -------------ENCW--ALN--------VNELRRAVQEA---KDHCDPKVLCIINP--GNPTGQVQ-SRKCIEDVIHF 263 (498)
T ss_dssp -------------GGTT--BCC--------HHHHHHHHHHH---TTTSEEEEEEEESS--CTTTCCCC-CHHHHHHHHHH
T ss_pred -------------cccC--CCC--------HHHHHHHHHhh---hccCCCeEEEEECC--CCCCCCcC-CHHHHHHHHHH
Confidence 0000 011 24566666531 0111344 444555 78888654 67789999999
Q ss_pred HHHcCCeEEEecccccccccC--Ccchhhhc--CCC------CcEE---EeccccC--CCCCCceeee---ccHHHHHhh
Q 002941 650 CQNRKIPVIFDEVFTGFWRLG--VETTADLL--GCV------PDIA---CYGKLLT--GGVIPLAATL---ATNAVFDSF 711 (863)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG--~~~a~e~~--gv~------PDiv---t~sKgLg--gG~~Pigav~---~~~~i~~~l 711 (863)
|++||+++|+||++..+...+ ....+... +.. .+++ +|||++. .| +.+|+++ .++++++.+
T Consensus 264 a~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l 342 (498)
T 3ihj_A 264 AWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQL 342 (498)
T ss_dssp HHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHH
T ss_pred HHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHH
Confidence 999999999999997764332 12222111 111 1222 7899994 57 8999998 689999987
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhc--Ch---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--DP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
... .......++++.+++.++++--+ ++ .+.+...+..+++++.. +.+.+.+.++|.+..+...|.|
T Consensus 343 ~~~-------~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~-~~l~~~L~~~~g~~~~~p~gg~ 414 (498)
T 3ihj_A 343 VKL-------LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKA-KLTEDLFNQVPGIHCNPLQGAM 414 (498)
T ss_dssp HHH-------HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTEECCCCCBSS
T ss_pred HHH-------HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcEecCCCeEE
Confidence 641 22334556777766665553100 00 11111122222222111 1233445566666655555544
Q ss_pred E-EEEEccCCc------CCCCchHHHHH-HHHHHHHCCcEEEec---C-----CEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 787 C-AIELQAAGC------NAGYGSLYAAS-LLKKLREDGVYMRPL---G-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 787 ~-~iel~~~~~------~~~~~~~~~~~-l~~~l~e~GV~~~p~---g-----~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
+ .+.+..+.. ..... .... +...|.++||++.|. + +.+|++. ..+++++++++++|.+++
T Consensus 415 ~~~~~l~~p~~~~~~~~~~g~~--~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 415 YAFPRIFIPAKAVEAAQAHQMA--PDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFH 490 (498)
T ss_dssp EECCEECCCHHHHHHHHHTTSC--HHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred EEEEeccCchhhhHHHHhcCCC--cHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHH
Confidence 4 444532110 00000 1112 344566789999873 1 4788874 589999999999999999
Q ss_pred HHHHH
Q 002941 851 EEFDK 855 (863)
Q Consensus 851 ~~l~~ 855 (863)
+++.+
T Consensus 491 ~~~~~ 495 (498)
T 3ihj_A 491 INFLE 495 (498)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=148.58 Aligned_cols=253 Identities=14% Similarity=0.058 Sum_probs=150.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| ..||+....|++
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~v~~~sG~~Ai~~al~al~~---------~G------------d~Vi~~~~~y~~ 133 (430)
T 3ri6_A 78 RSSNPTVEDLEQRLKNLTGA---LGVLALGSGMAAISTAILTLAR---------AG------------DSVVTTDRLFGH 133 (430)
T ss_dssp --CCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHCC---------TT------------CEEEEETTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHHhC---------CC------------CEEEEcCCCchh
Confidence 34678889999999999884 5688889999999999986621 12 578898888887
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.......... . .|+....+|. +|
T Consensus 134 ~~~~~~~~~~--------------~-------------~G~~~~~v~~------------------------~d------ 156 (430)
T 3ri6_A 134 TLSLFQKTLP--------------S-------------FGIEVRFVDV------------------------MD------ 156 (430)
T ss_dssp HHHHHHTHHH--------------H-------------TTCEEEEECT------------------------TC------
T ss_pred HHHHHHHHHH--------------H-------------cCCEEEEeCC------------------------CC------
Confidence 5331110000 0 0000011110 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++||++||+||+++ +|.......+
T Consensus 157 --~~~l~~ai~--------~~t~~v~~e~p-~NptG~~~d----l~~i~~la~~~g~~livD~a~~----~~~~~~~~~~ 217 (430)
T 3ri6_A 157 --SLAVEHACD--------ETTKLLFLETI-SNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT----PPYLLEAKRL 217 (430)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS----CTTTCCGGGG
T ss_pred --HHHHHHhhC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc----ccccCChHHc
Confidence 244555553 35788999986 899998776 8899999999999999999995 2333333345
Q ss_pred CCCCcEE--EeccccCCCCCCceeeec---cHHH------------------HHhhhcCCccceeecccCCCccHHHHHH
Q 002941 679 GCVPDIA--CYGKLLTGGVIPLAATLA---TNAV------------------FDSFVGDSKLKALLHGHSYSAHALGCAA 735 (863)
Q Consensus 679 gv~PDiv--t~sKgLggG~~Pigav~~---~~~i------------------~~~l~~~~~~~~~~~~~T~~~~pla~AA 735 (863)
|. |++ +++|.++|.-..+|++++ +..+ ++..... .........+|..++.
T Consensus 218 g~--div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-----~~~~~g~~~~~~~a~l 290 (430)
T 3ri6_A 218 GV--DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-----VFQNLGPSLSPHNAYL 290 (430)
T ss_dssp TC--SEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-----HHHHHCCCCCHHHHHH
T ss_pred CC--EEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-----HHHhcCCCCCHHHHHH
Confidence 54 555 667999863133444443 2111 1111110 0011122347787777
Q ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-----------------ccce-EEEEEEccCCcC
Q 002941 736 AAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-----------------ALGT-LCAIELQAAGCN 797 (863)
Q Consensus 736 alAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-----------------g~Gl-~~~iel~~~~~~ 797 (863)
++..++.+.. ..++..+++.++. +.++++|.|..|. |.|. |+++++...
T Consensus 291 ~l~~l~~l~~--r~~~~~~na~~la--------~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~--- 357 (430)
T 3ri6_A 291 QSLGLETMAL--RIERSCQNAQELA--------HWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK--- 357 (430)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHH--------HHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH---
T ss_pred HHhhhhhHHH--HHHHHHHHHHHHH--------HHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH---
Confidence 7777776531 1234444444443 3456778777665 3466 999999732
Q ss_pred CCCchHHHHHHHHHHHHCC
Q 002941 798 AGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~G 816 (863)
..+.++...+.-.+
T Consensus 358 -----~~~~~~~~~l~~~~ 371 (430)
T 3ri6_A 358 -----EASYRFMDALKLIR 371 (430)
T ss_dssp -----HHHHHHHHHCSSSE
T ss_pred -----HHHHHHHHhCCcce
Confidence 23555666655433
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=145.60 Aligned_cols=361 Identities=11% Similarity=0.035 Sum_probs=194.0
Q ss_pred EEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh-cCCC----CCCeEEEeCChhhHHH
Q 002941 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG-VGKG----WASRAYFSDNGSTAIE 475 (863)
Q Consensus 401 ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~-~p~~----~~~~v~f~~SGSeAvE 475 (863)
.+|+.. ...++ ..|.+++++.+++....|.. +.+..+...++++.+.+. .+.+ ..+.+++++++++|+.
T Consensus 106 ~i~l~~----g~~~~-~~~~~~~al~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 106 SLSYVR----DQLGL-DPAAFLHEMVDGILGCNYPV-PPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHH----HTSCC-CHHHHHHHHHHHHHTCSCCS-SSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hheccc----CCCCC-CChHHHHHHHHhhhcCCCCC-CcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 455443 33466 67889999888875332221 223345566666665432 1110 1368999999999999
Q ss_pred HHHHHHH-HHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 476 IALKMAF-RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 476 ~ALklA~-r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
.+++... +.+ .. .| .+|++...+|++....+...+. +
T Consensus 180 ~~~~~l~~~~l---~~--~G------------d~Vlv~~P~y~~~~~~~~~~~~-----g-------------------- 217 (546)
T 2zy4_A 180 YIFESLKLNGL---LK--AG------------DKVAIGMPVFTPYIEIPELAQY-----A-------------------- 217 (546)
T ss_dssp HHHHHHHHTTS---SC--TT------------CEEEEEESCCHHHHHHHHSTTS-----C--------------------
T ss_pred HHHHHhhhhhc---CC--CC------------CEEEEeCCCCccHHHHHHHcCC-----C--------------------
Confidence 9998641 101 00 11 5799999999987654321110 0
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAG 633 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAv-IvEPViqg~g 633 (863)
...+++|... ...|. -| .+.+++.+ ..++.+| ++.| ++..
T Consensus 218 ----~~~~~v~~~~---------------~~~~~--~d--------~~~l~~~~--------~~~~k~v~l~~p--~NPt 258 (546)
T 2zy4_A 218 ----LEEVAINADP---------------SLNWQ--YP--------DSELDKLK--------DPAIKIFFCVNP--SNPP 258 (546)
T ss_dssp ----CEEEEEECBG---------------GGTTB--CC--------HHHHGGGG--------STTEEEEEEESS--CSSS
T ss_pred ----cEEEEEecCc---------------ccCCC--CC--------HHHHHHhh--------CCCCeEEEEECC--CCCC
Confidence 0001111000 00000 11 12233322 1234444 4555 8898
Q ss_pred CceeCCHHHHHHHHHHH--HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccC-CCCCCceeeeccHH-HHH
Q 002941 634 GMHMVDPLFQRILVKEC--QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-VFD 709 (863)
Q Consensus 634 G~~~pp~~fL~~Lrelc--~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLg-gG~~Pigav~~~~~-i~~ 709 (863)
|.+. +.+.+++|.++| ++||+++|+||++..|+..+........+....+.+|||.+| .| +++|+++++++ +++
T Consensus 259 G~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~ 336 (546)
T 2zy4_A 259 SVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFD 336 (546)
T ss_dssp CBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-GCEEEEEEESSCHHH
T ss_pred CccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-cceEEEEECCHHHHH
Confidence 8554 677899999999 889999999999998864322221111111122447899996 67 89999999875 777
Q ss_pred hhhcCC----------ccc--------------------eeecccCCCccHHHHHH-HHH-HHHHhcC-hhhHHhHHHHH
Q 002941 710 SFVGDS----------KLK--------------------ALLHGHSYSAHALGCAA-AAK-SIKWFKD-PQTNHNIIPER 756 (863)
Q Consensus 710 ~l~~~~----------~~~--------------------~~~~~~T~~~~pla~AA-alA-aL~~l~~-~~l~~~l~~~~ 756 (863)
.+...- ... .+....+.+.+.++.++ ++. ...++++ +.+.+++++..
T Consensus 337 ~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~ 416 (546)
T 2zy4_A 337 LALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLI 416 (546)
T ss_dssp HHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 653110 000 00012223444444443 322 2233433 34444444443
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCC---cCCCCch------HHHHHHHHHHHHCCcEEEec-----
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG---CNAGYGS------LYAASLLKKLREDGVYMRPL----- 822 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~---~~~~~~~------~~~~~l~~~l~e~GV~~~p~----- 822 (863)
+..++.+ .+.+. .+.......-|+++.+++..-. ....+.. .....+.+.+.++||.+.|+
T Consensus 417 ~~r~~~l----~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~ 491 (546)
T 2zy4_A 417 RRRETTL----YRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS 491 (546)
T ss_dssp HHHHHHH----HGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC
T ss_pred HHHHHHH----HHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCC
Confidence 3333322 22222 2211112245666677764200 0000000 01234667788999999984
Q ss_pred -CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 002941 823 -GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 856 (863)
Q Consensus 823 -g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~ 856 (863)
.+.+|+... ..+++++++++++|.++++++.+.
T Consensus 492 ~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~~ 525 (546)
T 2zy4_A 492 NRPSGRASLA-NLNEYEYAAIGRALRKMADELYAE 525 (546)
T ss_dssp SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 257998754 458999999999999998877643
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=132.03 Aligned_cols=342 Identities=11% Similarity=-0.022 Sum_probs=183.8
Q ss_pred CcHHHHHHHHHHHHhcccccCCCC--CChHHHHHHHHHHhhcCCCCCC-----eEEEeCChhhHHHHHHHHHHHHHHh--
Q 002941 417 LQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWAS-----RAYFSDNGSTAIEIALKMAFRKFSF-- 487 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~--~~~~~~eLae~L~~~~p~~~~~-----~v~f~~SGSeAvE~ALklA~r~~~~-- 487 (863)
.+|.+.+++.+.+.+..... ..+ ..+...++.++|+++++.+ .+ .++|+++|+||+..|++.++..+..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~la~l~g~~-~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~ 131 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDK-EEYPQSAAIDLRCVNMVADLWHAP-APKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCT-TTCHHHHHHHHHHHHHHHHHTTCC-CCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCh-hhChhHHHHHHHHHHHHHHHhCCC-cccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887775432211 111 1233456667778877743 22 3899999999999999988432211
Q ss_pred -hccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcc
Q 002941 488 -DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (863)
Q Consensus 488 -~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (863)
..|.. + .+..||+.. +|-....+....|.. +..++...
T Consensus 132 ~~~G~~-~----------~~~~vi~~~--~h~~~~~~~~~~G~~----------------------------v~~v~~~~ 170 (452)
T 2dgk_A 132 EAAGKP-T----------DKPNLVCGP--VQICWHKFARYWDVE----------------------------LREIPMRP 170 (452)
T ss_dssp HHTTCC-C----------SCCEEEESS--CCHHHHHHHHHTTCE----------------------------EEECCCBT
T ss_pred HhcCCC-C----------CCcEEEECC--CcHHHHHHHHHcCce----------------------------EEEEecCC
Confidence 01210 0 014566655 675544333222100 01111100
Q ss_pred -hhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHH
Q 002941 567 -WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 567 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~ 645 (863)
.+ .-| .+.|++.+. .+..+.+++.| .+..|.+.+ +++
T Consensus 171 ~~~---------------------~~d--------~~~l~~~i~-------~~t~~v~~~~~--~n~tG~~~~----l~~ 208 (452)
T 2dgk_A 171 GQL---------------------FMD--------PKRMIEACD-------ENTIGVVPTFG--VTYTGNYEF----PQP 208 (452)
T ss_dssp TBC---------------------SCC--------HHHHHHHCC-------TTEEEEECBBS--CTTTCBBCC----HHH
T ss_pred CCC---------------------eEC--------HHHHHHHHh-------hCCEEEEEEcC--CcCCcccCC----HHH
Confidence 00 011 245666653 23344455566 467787766 999
Q ss_pred HHHHHHHc------CCeEEEecccccccc---cCC-cchhhhcCCCCcEEEec--cccCCCCCCceeeeccHH-HH-Hhh
Q 002941 646 LVKECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA-VF-DSF 711 (863)
Q Consensus 646 Lrelc~~~------gilLI~DEV~TGfGR---tG~-~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~-i~-~~l 711 (863)
|.++|++| |+++++||++.++.. .+. .+.++. ...|.++++ |.+.+| ..+|+++++++ +. +.+
T Consensus 209 I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~ 285 (452)
T 2dgk_A 209 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAP-LGCGWVIWRDEEALPQEL 285 (452)
T ss_dssp HHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGG
T ss_pred HHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCC-CCeEEEEEcCHHHHHHHh
Confidence 99999996 999999999977532 111 111111 135777764 866566 68899998643 33 433
Q ss_pred hcCCcc-ceeecccC--CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-c----cc
Q 002941 712 VGDSKL-KALLHGHS--YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-V----AL 783 (863)
Q Consensus 712 ~~~~~~-~~~~~~~T--~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-r----g~ 783 (863)
.....+ .......+ ++......++..++++.+..+. +++..+....+++++ .+.+.+.+.+.-+ . ..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g-~~~~~~~~~~~a~~l----~~~L~~~~~~~~~~~~~~~~~ 360 (452)
T 2dgk_A 286 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREG-YTKVQNASYQVAAYL----ADEIAKLGPYEFICTGRPDEG 360 (452)
T ss_dssp CEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHTTSSEEEEEECCTTTB
T ss_pred ccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH----HHHHHhCCCeEEecCCCCCCC
Confidence 210000 00000001 1111112233334454443332 233344444444444 3344555543322 1 34
Q ss_pred ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
..++.+.+.... .... ....+.+.|.++|++++. . ...+|++....+|++++|.+++.|+++++.+.+
T Consensus 361 ~~~v~f~~~~~~-~~~~---~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 361 IPAVCFKLKDGE-DPGY---TLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp SSEEEEEECTTC-CCSC---CHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCcc-cccC---CHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 567777775321 0000 135788899999996542 1 247999877778999999999999999887654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-11 Score=135.20 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=128.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~P 697 (863)
+.+|++... ++..|.+.+ +++|.++ ||+++|+||+++.+.+. ...+ .+|+++++ |.++.+ --
T Consensus 166 ~~~v~~~~~-~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~-gg 229 (398)
T 2fyf_A 166 VDVIAWAHN-ETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASD-GG 229 (398)
T ss_dssp CSEEEEESE-ETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSC-SS
T ss_pred CCEEEEeCc-CCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCC-Cc
Confidence 445655554 788898877 3334444 99999999999644321 1111 27888765 988765 23
Q ss_pred ceeeeccHHHHHhhhcC-------Cccce-------eecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHH
Q 002941 698 LAATLATNAVFDSFVGD-------SKLKA-------LLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (863)
Q Consensus 698 igav~~~~~i~~~l~~~-------~~~~~-------~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~ 762 (863)
+|++++++++++.+... ..... +..+.++ +.+..+++++.++|+.+.+.+..+++.+..+.+++.
T Consensus 230 ~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 309 (398)
T 2fyf_A 230 LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQR 309 (398)
T ss_dssp EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 78899999998876310 00000 0012333 456677788888898775443234455555555555
Q ss_pred HHHHHHHHHhcCCCeeEe---c-cc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCC
Q 002941 763 WDLELIQQISSHRTVQRV---V-AL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGP 832 (863)
Q Consensus 763 l~~~l~~~~~~~p~v~~v---r-g~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl 832 (863)
+.+. +++.|.+.-+ . +. +.++.+.+.... ...++.+.|.++||.+++. ++.+|+.+..
T Consensus 310 l~~~----L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~ 377 (398)
T 2fyf_A 310 LYSW----AQERPYTTPFVTDPGLRSQVVGTIDFVDDV--------DAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFP 377 (398)
T ss_dssp HHHH----HHHSTTEEESCCSGGGBCSSEEEEEECTTS--------CHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCT
T ss_pred HHHH----HHHcCCceeccCChhhcCCcEEEEECCCCC--------CHHHHHHHHHHCCcEEecCcccCCCCEEEEEecC
Confidence 5433 3334433222 1 22 347888874321 1567889999999999753 3789999887
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~ 852 (863)
.++++|+++++++|++++++
T Consensus 378 ~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 378 AVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp TSCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999988754
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-12 Score=137.78 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=128.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~ 696 (863)
++.+|++... ++..|.+.+ +|+++||+++|+||+|+.+.+. .....+ |++++ +|.++. .
T Consensus 141 ~~k~v~~~~~-~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~--~ 201 (360)
T 1w23_A 141 NDAYLHITSN-NTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGP--S 201 (360)
T ss_dssp TEEEEEEESE-ETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSC--T
T ss_pred CCCEEEEeCC-CCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCC--C
Confidence 4667777775 899998764 3344899999999999644221 112222 77755 598863 2
Q ss_pred CceeeeccHHHHHhhhcCCccceee------cccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALL------HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~------~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
.+|++++++++++.+..... ..+. .+.++ +.++.+++++.++++.+++.+..+++.+..+.+++.+.+.
T Consensus 202 G~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--- 277 (360)
T 1w23_A 202 GVTVVIVKKDLLNTKVEQVP-TMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDT--- 277 (360)
T ss_dssp TCEEEEEEHHHHCSCCTTCC-GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH---
T ss_pred CcEEEEEcHHHHhhcccCCc-chhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---
Confidence 47899999998876543110 0000 12333 3466777788888887754323444555555555544333
Q ss_pred HHhcCCCe-eEe--c-c-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHH
Q 002941 770 QISSHRTV-QRV--V-A-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 770 ~~~~~p~v-~~v--r-g-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~ 841 (863)
+.+.+.+ ... . + .+.++.+.+... ....++.+.|.++||.+.+. .+.+|+.+...++++++++
T Consensus 278 -L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~ 348 (360)
T 1w23_A 278 -IDESNGFYVGHAEKGSRSLMNVTFNLRNE--------ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIA 348 (360)
T ss_dssp -HHTTTTSSEESSCGGGBCSSEEEEECSSH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHH
T ss_pred -HHHccCcccccCCchhccCcEEEEEcCCC--------ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHH
Confidence 3344422 211 2 2 245777776431 13567888899999999875 2689999888889999999
Q ss_pred HHHHHHHHHHH
Q 002941 842 LLLKLYQRLEE 852 (863)
Q Consensus 842 ~v~~L~~~l~~ 852 (863)
++++|++++++
T Consensus 349 ~~~~l~~~~~~ 359 (360)
T 1w23_A 349 LRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887653
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-11 Score=137.77 Aligned_cols=287 Identities=12% Similarity=0.054 Sum_probs=169.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
.+.++...+|+++|+++.+. +.+++++||++|+..+++..++ .| .+||+....|||
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~i~~ssGt~Ai~~al~~l~~---------~G------------d~Vi~~~~~y~~ 133 (415)
T 2fq6_A 78 RRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAFIE---------QG------------DHVLMTNTAYEP 133 (415)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTCC---------TT------------CEEEEETTSCHH
T ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHhC---------CC------------CEEEEeCCCchH
Confidence 35678889999999999874 4677779999999999875421 12 578988888887
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.. ..+.-. . ...+ +....+|. .|
T Consensus 134 ~~-~~~~~~----l---------~~~G-------------~~v~~v~~------------------------~d------ 156 (415)
T 2fq6_A 134 SQ-DFCSKI----L---------SKLG-------------VTTSWFDP------------------------LI------ 156 (415)
T ss_dssp HH-HHHHHT----G---------GGGT-------------CEEEEECT------------------------TC------
T ss_pred HH-HHHHHH----H---------HHcC-------------cEEEEECC------------------------CC------
Confidence 42 111100 0 0000 00000010 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccccCCcchhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGRtG~~~a~e 676 (863)
.+.+++.+. .++.+|++|.+ ++..|.+.+ +++|.++|++ ||++||+||+|. .+..+...
T Consensus 157 --~~~le~ai~--------~~tklV~~e~~-~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a-~~~~~~p~--- 217 (415)
T 2fq6_A 157 --GADIVKHLQ--------PNTKIVFLESP-GSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA-AGVLFKAL--- 217 (415)
T ss_dssp --GGGGGGGCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSSCGG---
T ss_pred --HHHHHHhhc--------cCCcEEEEECC-CCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCc-ccccCCcc---
Confidence 012333331 24678888987 899998876 8999999999 999999999995 22222222
Q ss_pred hcCCCCcEE--EeccccCCCC-CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 677 LLGCVPDIA--CYGKLLTGGV-IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 677 ~~gv~PDiv--t~sKgLggG~-~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
....|++ +++|.++++- ..+|++++++++++.+.... .......+|..++.++..++.+. ...++..
T Consensus 218 --~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------~~~G~~~~~~~a~~~~~~l~~l~--~r~~~~~ 287 (415)
T 2fq6_A 218 --DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------YLMGQMVDADTAYITSRGLRTLG--VRLRQHH 287 (415)
T ss_dssp --GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH------HHTTCCCCHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred --ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH------HhcCCCCCHHHHHHHHhhhhHHH--HHHHHHH
Confidence 2346888 4689998632 34688888888777665311 11112346777776666676542 1234445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEe------------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED 815 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~ 815 (863)
++...+.++| .++|.+..+ ++.|.++.+++.... ....+..+...+.-.
T Consensus 288 ~n~~~l~~~L--------~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~~l~~l~~~ 354 (415)
T 2fq6_A 288 ESSLKVAEWL--------AEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDNFSLF 354 (415)
T ss_dssp HHHHHHHHHH--------HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHH--------HcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHHHHHhCCcC
Confidence 5555555433 344443332 256889999996420 001233333333211
Q ss_pred Cc----------EEE--e--------------cCCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 816 GV----------YMR--P--------------LGNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 816 GV----------~~~--p--------------~g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
++ ... | .++.+|++.-.-.++++|+.+.++|++
T Consensus 355 ~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 355 SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp EECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred eEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 11 111 1 137899998888888888888877754
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-10 Score=129.72 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=124.0
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc------CCeEEEecccccccc---cCC-cchhhhcCCCCcEEEe-
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIACY- 687 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~------gilLI~DEV~TGfGR---tG~-~~a~e~~gv~PDivt~- 687 (863)
....+++.| .+..|.+.+ +++|.++|++| |++|++|+++.|+.. .+. .+.+.. ...|.+++
T Consensus 203 t~~v~~~~~--~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s 274 (502)
T 3hbx_A 203 TICVAAILG--STLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVS 274 (502)
T ss_dssp EEEEEEEBS--CTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEE
T ss_pred CEEEEEecC--CCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEEC
Confidence 344445566 466787766 99999999999 999999999976531 111 111111 13577654
Q ss_pred -ccccCCCCCCceeeecc-HHHH-HhhhcCCcc---ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 002941 688 -GKLLTGGVIPLAATLAT-NAVF-DSFVGDSKL---KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (863)
Q Consensus 688 -sKgLggG~~Pigav~~~-~~i~-~~l~~~~~~---~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~ 761 (863)
.|.+.++ ..+|+++++ ++.+ +.+.....+ ........++.....+++..++|..+..+++.+ ..++...+.+
T Consensus 275 ~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~-~~~~~~~~a~ 352 (502)
T 3hbx_A 275 GHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRN-VMENCRENMI 352 (502)
T ss_dssp TTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4776555 567777765 3433 222110000 000011112222334445555555553333322 2222223333
Q ss_pred HHHHHHHHHHhcCCCeeEecc--cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c----CCEEEEecC
Q 002941 762 LWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCG 831 (863)
Q Consensus 762 ~l~~~l~~~~~~~p~v~~vrg--~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~----g~~lr~~pp 831 (863)
+| .+.+.+.+.+.-+.. ...++.+.+.... . .....+.+.|.++|+++.. . ...+|+...
T Consensus 353 ~l----~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~---~---~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~ 422 (502)
T 3hbx_A 353 VL----REGLEKTERFNIVSKDEGVPLVAFSLKDSS---C---HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR 422 (502)
T ss_dssp HH----HHHHHTTTCEEECSCSSSSSEEEEEESSCS---S---CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC
T ss_pred HH----HHHHHhCCCEEEEeCCCCceEEEEEecCCC---c---CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC
Confidence 33 334455664433322 4457777775421 0 0134788999999998642 1 157999988
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
..+|+++++.+++.|+++++++.+
T Consensus 423 ~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 423 EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999987754
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-09 Score=125.72 Aligned_cols=239 Identities=10% Similarity=0.021 Sum_probs=126.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.|++.+++. ...+....+|++.-. .+..|.+-+ +++|.++|++||++|++|+++.|.-.....+.....|+
T Consensus 233 ~~Le~~i~~~--~~~g~~~~~vv~~~~-~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~ 305 (511)
T 3vp6_A 233 ADFEAKILEA--KQKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 305 (511)
T ss_dssp HHHHHHHHHH--HHTTCEEEEEEEEBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHH--HhcCCCcEEEEEecC-CCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc
Confidence 4455566430 011223566666654 678887765 99999999999999999999965422222222222243
Q ss_pred CCcEEEe--ccccCCCCCCceeeeccH-HHHHhhhcCCccceeecc-----------cCC-CccHHHHHHHHHHHHHhcC
Q 002941 681 VPDIACY--GKLLTGGVIPLAATLATN-AVFDSFVGDSKLKALLHG-----------HSY-SAHALGCAAAAKSIKWFKD 745 (863)
Q Consensus 681 ~PDivt~--sKgLggG~~Pigav~~~~-~i~~~l~~~~~~~~~~~~-----------~T~-~~~pla~AAalAaL~~l~~ 745 (863)
..|.+++ .|.+++. .-.|+++++. ++.+.........-+... .+. .+.+..+.+..++|+.+..
T Consensus 306 ~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~ 384 (511)
T 3vp6_A 306 RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 384 (511)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHH
T ss_pred cCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhH
Confidence 5698876 5988765 4567777654 444433211000000000 011 1112223334444554422
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec---ccceEEEEEEccCCcCCC-Cc-------hHHHHHHHHHHHH
Q 002941 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNAG-YG-------SLYAASLLKKLRE 814 (863)
Q Consensus 746 ~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr---g~Gl~~~iel~~~~~~~~-~~-------~~~~~~l~~~l~e 814 (863)
+. .+++.++...+.+++ .+.+++.|.+.-+. ....++.+.+.....+.. .. .....++.+.|++
T Consensus 385 ~g-l~~~~~~~~~~a~~l----~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 459 (511)
T 3vp6_A 385 VG-FENQINKCLELAEYL----YAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME 459 (511)
T ss_dssp HH-HHHHHHHHHHHHHHH----HHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHH----HHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 22 223333333333333 23344555543332 344455555543221100 00 1124468889999
Q ss_pred CCcEEEe----cC--CEEEEec-CCCCcHHHHHHHHHHHHHHHHHH
Q 002941 815 DGVYMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 815 ~GV~~~p----~g--~~lr~~p-pl~~t~eeid~~v~~L~~~l~~l 853 (863)
+|+++.. .+ +.+|+.. +..++++||+.+++.|++.-+.+
T Consensus 460 ~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 460 SGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp HTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred cCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9975532 12 3689987 67789999999999998876554
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-10 Score=127.67 Aligned_cols=203 Identities=14% Similarity=0.007 Sum_probs=119.6
Q ss_pred cEEEE-EEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC-cchhhhcCCCCcEEEe--ccccCCC
Q 002941 619 CIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACY--GKLLTGG 694 (863)
Q Consensus 619 ~iAAv-IvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivt~--sKgLggG 694 (863)
++.+| +.-| .+..|.+.+ +++|.++|++||+++++||++.++. .|. ......+...+|++++ .|.++++
T Consensus 231 ~~~~vv~~~~--nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~~~~D~~~~s~hK~~~~p 303 (456)
T 2z67_A 231 NRPCVLSTLT--FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-NYYLEKLKKAFKYRVDAVVSSSDKNLLTP 303 (456)
T ss_dssp CCEEEEEESS--CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-HHHHHHHHHHHTSCCSEEEEEHHHHHCCC
T ss_pred CeEEEEEeCC--CCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-HHhhHHHHHhhCCCCCEEEEcCCCCcCCC
Confidence 34444 4555 467787766 8999999999999999999986552 221 1111112116898876 6987776
Q ss_pred CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
..+|++++ ++++++.+... ..+.. .+++ ..++.+++..+..++ .+++.+....+.+++.+.+.+...+
T Consensus 304 -~g~G~l~~~~~~~~~~l~~~------~~g~~-~~~~--~~~~~aal~~l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~ 372 (456)
T 2z67_A 304 -IGGGLVYSTDAEFIKEISLS------YPGRA-SATP--VVNTLVSLLSMGSKN-YLELVKNQKNSKKLLDELLNDLSKK 372 (456)
T ss_dssp -SSCEEEEESCHHHHHHHHTT------SCSCB-CSHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEEcCHHHHhhcCcC------CCCCC-CCCH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 68899999 57787776431 12222 2333 334445555543322 3444555555555555554443211
Q ss_pred CC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc---EEE------------e-cCCEEEEecCCCCcH
Q 002941 774 HR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV---YMR------------P-LGNVIYLMCGPCSSP 836 (863)
Q Consensus 774 ~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV---~~~------------p-~g~~lr~~ppl~~t~ 836 (863)
.+ .+... . .++.+.+..+. ...++.+.|.++|+ -+. . ..+.+|++....+|+
T Consensus 373 ~g~~v~~~--~-~~v~~~~~~~~--------~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~ 441 (456)
T 2z67_A 373 TGGKFLDV--E-SPIASCISVNS--------DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRT 441 (456)
T ss_dssp SSCCBCCC--C-CSSEEEEECSS--------CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCH
T ss_pred cCCEecCC--C-CeEEEEEeccc--------HHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCH
Confidence 11 11111 1 34444542121 13567888999986 222 1 136788887778899
Q ss_pred HHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRL 850 (863)
Q Consensus 837 eeid~~v~~L~~~l 850 (863)
++||+++++|++++
T Consensus 442 eeid~~l~~L~~~~ 455 (456)
T 2z67_A 442 EDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=131.14 Aligned_cols=183 Identities=14% Similarity=0.057 Sum_probs=111.3
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCc-chhhhcCCCCcEE--EeccccCCCCCCceeeeccHH------------
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVE-TTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA------------ 706 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~-~a~e~~gv~PDiv--t~sKgLggG~~Pigav~~~~~------------ 706 (863)
+++|+++|++||++|++|++|. |+.-.|.. ..++ ..|++ +++|+|+| ...|+++++++
T Consensus 220 l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~ 293 (490)
T 2a7v_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREI 293 (490)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGCS--CSCEEEEEECSEEEEETTTEEEE
T ss_pred HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCcc--ccchheeeccchhcccccccchh
Confidence 8999999999999999999984 32122221 1111 25877 45899965 35677887764
Q ss_pred ---HHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE
Q 002941 707 ---VFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (863)
Q Consensus 707 ---i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~ 779 (863)
+.+.++. ....++.+ .++..+++..+++..+.++ ++.+++.++.+++.+.|.+ .+. .-
T Consensus 294 ~~~l~~~i~~------~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--------~G~-~v 358 (490)
T 2a7v_A 294 PYTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--------RGY-SL 358 (490)
T ss_dssp ECCCHHHHHH------HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--------TTC-EE
T ss_pred hHHHHHHHHH------HhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--------cCc-EE
Confidence 3344332 11222333 3455555555566665443 3455666666666664422 221 11
Q ss_pred ec-ccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c------CCEEEEecCC----CCcHHHHHHHH
Q 002941 780 VV-ALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIYLMCGP----CSSPEVCSQLL 843 (863)
Q Consensus 780 vr-g~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~------g~~lr~~ppl----~~t~eeid~~v 843 (863)
+. +.. .++.+.+.... . ....+.+.|.+.||.+.. . ...+|+..|. .++++|+++++
T Consensus 359 ~~~~t~t~lv~vdl~~~g----~---~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~ 431 (490)
T 2a7v_A 359 VSGGTDNHLVLVDLRPKG----L---DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVV 431 (490)
T ss_dssp GGGSCSSSEEEEECTTTT----C---CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred ecCCCCCeEEEEEeCCCC----C---CHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHH
Confidence 11 222 45666665321 0 145677888899999973 1 2689995544 36899999999
Q ss_pred HHHHHHHHHH
Q 002941 844 LKLYQRLEEF 853 (863)
Q Consensus 844 ~~L~~~l~~l 853 (863)
+.|.+++...
T Consensus 432 ~~i~~~l~~~ 441 (490)
T 2a7v_A 432 DFIDEGVNIG 441 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=134.08 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=123.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccc-cccccCCc-chhhhcC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVE-TTADLLG 679 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~T-GfGRtG~~-~a~e~~g 679 (863)
+.+++.+.+ .+..+|++ .. .+.+ .+. + +++|+++|++||++||+||+|. |+-..|.. ..+.
T Consensus 183 d~le~~i~~-------~~tklIi~-~~-sn~~-~~~-d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--- 245 (483)
T 1rv3_A 183 DRLEENARL-------FHPKLIIA-GT-SCYS-RNL-D---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--- 245 (483)
T ss_dssp HHHHHHHHH-------HCCSEEEE-CC-SSCC-SCC-C---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---
T ss_pred HHHHHHHhh-------cCCcEEEE-eC-CcCC-CcC-C---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---
Confidence 456666642 12346666 43 4554 333 3 8999999999999999999985 33112211 1111
Q ss_pred CCCcEEEe--ccccCCCCCCceeeeccHH---------------HHHhhhcCCccceeecccCCCccHHHHHHHHHHHHH
Q 002941 680 CVPDIACY--GKLLTGGVIPLAATLATNA---------------VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742 (863)
Q Consensus 680 v~PDivt~--sKgLggG~~Pigav~~~~~---------------i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~ 742 (863)
..|++++ +|+|+| .+.|+++++++ +.+.+... ...+...+.+...+++..++++.
T Consensus 246 -~~div~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~-----~~~~~~g~~~~~~iaal~~Al~~ 317 (483)
T 1rv3_A 246 -HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA-----VFPGLQGGPHNHAIAGVAVALKQ 317 (483)
T ss_dssp -TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH-----HTTTTCCSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhhh-----cCCcccCCccHHHHHHHHHHHHH
Confidence 3688865 599965 46788888875 22322210 01111223345556666677877
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE
Q 002941 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR 820 (863)
Q Consensus 743 l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~ 820 (863)
+.++++ +...+....+++.+.+.|. +.+ +.-+.+ .+ .++.+.+.... . ....+.+.|.+.||.+.
T Consensus 318 ~~~~~~-~~~~~~~~~~~~~l~~~L~----~~g-~~~~~~~~~~~~~~v~~~~~g----~---~~~~~~~~L~~~gI~v~ 384 (483)
T 1rv3_A 318 AMTPEF-KEYQRQVVANCRALSAALV----ELG-YKIVTGGSDNHLILVDLRSKG----T---DGGRAEKVLEACSIACN 384 (483)
T ss_dssp HTSHHH-HHHHHHHHHHHHHHHHHHH----HTT-CEEGGGSCSSSEEEEEGGGGT----C---CHHHHHHHHHHTTEECE
T ss_pred HhChhH-HHHHHHHHHHHHHHHHHHH----hcC-CEeccCCCCCceEEEeccCCC----C---CHHHHHHHHHhCCcEEe
Confidence 655432 3333333444444433332 222 211222 12 35556664321 0 13456778889999998
Q ss_pred ----ec------CCEEEEecCCCCc----HHHHHHHHHHHHHHHHH
Q 002941 821 ----PL------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 821 ----p~------g~~lr~~ppl~~t----~eeid~~v~~L~~~l~~ 852 (863)
|. ...+|+..+..+| ++|+++++++|.++++.
T Consensus 385 ~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 53 2589998776556 99999999999998876
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-10 Score=128.07 Aligned_cols=314 Identities=11% Similarity=0.060 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHH-HhhcCCCCCCeEEEeCChhhHHHHHHHHH-HHHHHhhcccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELL-LQGVGKGWASRAYFSDNGSTAIEIALKMA-FRKFSFDHEVLVD 494 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L-~~~~p~~~~~~v~f~~SGSeAvE~ALklA-~r~~~~~~G~~tg 494 (863)
..|++.+|+.+.++...+. ...+...+|.+++ +++++. .+.+++++||++|+..|++.+ ++ .|
T Consensus 14 ~~~~i~~a~~~~~~~~~~~----~~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l~~~---------~G 78 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT----NYGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLKKRK---------KG 78 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHHSCT---------TC
T ss_pred CcHHHHHHHHHHHHcCCcc----cCCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHcCCC---------Cc
Confidence 4578899999988764321 1256788999999 999882 257899999999999998765 10 12
Q ss_pred ccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCc-chhhhhhc
Q 002941 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIV 573 (863)
Q Consensus 495 r~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~ 573 (863)
..||+...+|.+.... +...|.. +..++.. ..+
T Consensus 79 ------------d~Vi~~~~~~~~~~~~-~~~~G~~----------------------------~~~v~~~~~~~----- 112 (377)
T 3ju7_A 79 ------------KYALMPSFTFPATPLA-AIWCGLE----------------------------PYFIDISIDDW----- 112 (377)
T ss_dssp ------------CEEEEESSSCTHHHHH-HHHTTCE----------------------------EEEECBCTTTC-----
T ss_pred ------------CEEEECCCCcHHHHHH-HHHcCCE----------------------------EEEEecCCccC-----
Confidence 5788888888764322 2211100 0001110 000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~ 653 (863)
.-| .+.+++.+.. ...++.+|+ |+ +..|...+ +++|.++|+ |
T Consensus 113 ----------------~~d--------~~~l~~~i~~-----~~~~tk~v~--~~--~~~G~~~~----~~~i~~la~-~ 154 (377)
T 3ju7_A 113 ----------------YMD--------KTVLWDKIEE-----LKEEVAIVV--PY--ATFGSWMN----LEEYEELEK-K 154 (377)
T ss_dssp ----------------SBC--------HHHHHHHHHH-----HGGGEEEEC--CB--CGGGBCCC----CHHHHHHHH-T
T ss_pred ----------------CcC--------HHHHHHHHhc-----CCCCceEEE--EE--CCCCCccC----HHHHHHHHh-c
Confidence 011 2445565521 011255555 43 33465554 789999999 9
Q ss_pred CCeEEEecccccccccCCcchhhhc-CCCCcEEEec----cccCCCCCCceeeec-cHHHHHhhhc---CCc---cceee
Q 002941 654 KIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYG----KLLTGGVIPLAATLA-TNAVFDSFVG---DSK---LKALL 721 (863)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~-gv~PDivt~s----KgLggG~~Pigav~~-~~~i~~~l~~---~~~---~~~~~ 721 (863)
|+++|.|++|+ +|.. +..... +...|+.++| |.+++| ..|++++ ++++++.+.. .+. .....
T Consensus 155 ~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 228 (377)
T 3ju7_A 155 GVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTM 228 (377)
T ss_dssp TCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCS
T ss_pred CCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCCceee
Confidence 99999999995 5432 112223 2236887775 999875 3556665 5666665442 110 00112
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC----eeEecc---cceEEEEEEccC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT----VQRVVA---LGTLCAIELQAA 794 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~----v~~vrg---~Gl~~~iel~~~ 794 (863)
.++.+..+++.+|.+++.|+.++ .+.++..++.+++.+.| ++.+. +....+ .-.++.+.+.+.
T Consensus 229 ~g~~~~~~~~~aa~~~~~l~~l~--~~~~~~~~~~~~~~~~L--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3ju7_A 229 MGFNCKMSEYAAAIGIATMKKWD--DKLKERTRISEWYKQLL--------QSNGLMKKGWQLQKTEAVIQQFMPILCPEE 298 (377)
T ss_dssp SCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHH--------HHTTTTTTTCBCCCCSCBCCSSEEEECCTT
T ss_pred ccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--------cCCCCccccccCCCCCcceEEEEEEEeCCh
Confidence 34566778898888888887653 23344445555444433 22221 111111 112334444321
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec--------------------------CCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------------------g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
. ....+.+.|.++||.++.. ...+++.....+|++|++.+++.|.+
T Consensus 299 ~--------~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 299 V--------RNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp S--------CHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred h--------hHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 1 1567889999999988531 13567655556899999999999988
Q ss_pred HHHHH
Q 002941 849 RLEEF 853 (863)
Q Consensus 849 ~l~~l 853 (863)
++..-
T Consensus 371 ~~~~~ 375 (377)
T 3ju7_A 371 KVVSA 375 (377)
T ss_dssp -----
T ss_pred HHhcc
Confidence 77653
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-10 Score=126.66 Aligned_cols=290 Identities=12% Similarity=0.014 Sum_probs=160.7
Q ss_pred CcHHHHHHHHHHHH---hcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEE---eCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAA---RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~---~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f---~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
|+++|.+|+.++.. .+.......+...-..+|.++++++++. +..++ ++||++|+..+++..++
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~---e~alv~p~~~sGt~Ai~~al~all~------- 99 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT---EAALVRPQIISGTHAISTVLFGILR------- 99 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTSCSHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC---CcEEEECCCccHHHHHHHHHHHhcC-------
Confidence 56788888877542 1222222234456678899999999984 45555 89999999999876521
Q ss_pred ccccccCCCccccccccEEEEec-CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~-~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
.| ..||+.. ..|.+ +...+..++. ....+ ...+. .+.+++....+
T Consensus 100 --~G------------D~Vl~~~~~~y~~-~~~~~~~~g~--~~~~l-----~~~G~-----------~~~~v~~~~~g- 145 (409)
T 3jzl_A 100 --PD------------DELLYITGQPYDT-LEEIVGIRKQ--GQGSL-----KDFHI-----------GYSSVPLLENG- 145 (409)
T ss_dssp --TT------------CEEEECSSSCCTT-HHHHHTSSSS--SSSCT-----GGGTC-----------EEEECCCCTTS-
T ss_pred --CC------------CEEEEeCCCCcHh-HHHHHhcccc--hhhHH-----HHcCC-----------EEEEeCCCCCC-
Confidence 12 5688877 44444 3222211111 00000 00000 01111110000
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCceeCCHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fL~~ 645 (863)
..| .+.+++.+. .+..+|++|+ . .++.|.+. -+++
T Consensus 146 --------------------~~d--------~e~l~~ai~--------~~tklV~i~~s~g~p-~nptg~v~----~l~~ 184 (409)
T 3jzl_A 146 --------------------DVD--------FPRIAKKMT--------PKTKMIGIQRSRGYA-DRPSFTIE----KIKE 184 (409)
T ss_dssp --------------------CCC--------HHHHHHHCC--------TTEEEEEEECSCTTS-SSCCCCHH----HHHH
T ss_pred --------------------CcC--------HHHHHHhcc--------CCCeEEEEECCCCCC-CCCcCccc----cHHH
Confidence 011 244555552 3567888997 6 67777654 3999
Q ss_pred HHHHHHH--cCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCCC-ceeeeccHHHHHhhhcCCcccee
Q 002941 646 LVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVGDSKLKAL 720 (863)
Q Consensus 646 Lrelc~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~P-igav~~~~~i~~~l~~~~~~~~~ 720 (863)
|.++|++ ||+++|+||++..+ ..+. +......|++ +++|.++|+..| .|++++++++++.+..... ..
T Consensus 185 I~~la~~~~~~~~livD~a~~~~-~~~~----~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~--~~ 257 (409)
T 3jzl_A 185 MIVFVKNINPEVIVFVDNCYGEF-VEYQ----EPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLT--TP 257 (409)
T ss_dssp HHHHHHHHCTTCEEEEECTTCTT-TSSC----CSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHS--CT
T ss_pred HHHHHHhhCCCCEEEEeCCcccc-cccC----CccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhc--cc
Confidence 9999999 99999999998533 2111 1112235887 578999876445 4778899999998764100 00
Q ss_pred ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC-e---eEecccceEEEEEEccCCc
Q 002941 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-V---QRVVALGTLCAIELQAAGC 796 (863)
Q Consensus 721 ~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~-v---~~vrg~Gl~~~iel~~~~~ 796 (863)
..+.+.+..+..+.+++..|+.+ +...++..+++.++.+.| ++++. | ..-.+..+++.|.+.+.
T Consensus 258 ~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L--------~~~g~~v~p~~~~~~~~~i~~i~l~~~-- 325 (409)
T 3jzl_A 258 GIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAML--------AEFGVEADPVWDAPRTDLIQSVSFHNK-- 325 (409)
T ss_dssp TTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--------HHTTCEEESCTTSCCSSSCCEEECSCH--
T ss_pred cccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHH--------HhCCCcccCCCCCCCccEEEEEEeCCH--
Confidence 11222232222233444444433 233455666666665543 23332 1 01123344888888633
Q ss_pred CCCCchHHHHHHHHHHHHCC
Q 002941 797 NAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 797 ~~~~~~~~~~~l~~~l~e~G 816 (863)
..+.++++.|.+..
T Consensus 326 ------~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 326 ------EKMVAFAQAIQAAS 339 (409)
T ss_dssp ------HHHHHHHHHHHHTS
T ss_pred ------HHHHHHHHHHHhcC
Confidence 25778899998764
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=132.80 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=112.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCCchhHHHhhccccccccCCCccccccchh
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (863)
.+.+||+||++++|||+++..|.++|+ ++|+++++++|.|+|..-..+ .++
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~-----~~G~~v~~v~tgqtg~li~~~--------~gv---------------- 219 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLATGQTGILIGAD--------AGY---------------- 219 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEECSHHHHHTTCS--------EEC----------------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHH-----hcCCeEEEEccCceeeeeccC--------CCC----------------
Confidence 568999999999999999999999999 999999999988875421111 011
Q ss_pred hhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCCCChhH
Q 002941 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (863)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~~~~~~ 196 (863)
......+++.+.+.+ +
T Consensus 220 --------------------------------------------------------~~D~~~~~~~ag~~e-~------- 235 (350)
T 2g0t_A 220 --------------------------------------------------------VIDAVPADFVSGVVE-K------- 235 (350)
T ss_dssp --------------------------------------------------------CGGGSBGGGHHHHHH-H-------
T ss_pred --------------------------------------------------------CCCceecchhhHHHH-h-------
Confidence 112344567777666 2
Q ss_pred HHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEEC-CC-----------C-Cc
Q 002941 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD-GR-----------L-GG 263 (863)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~-~~-----------~-g~ 263 (863)
++..+. .++ +|++||||+||++.|+. ....+.+.+....+.++++. .. + +.
T Consensus 236 ~i~~~~--~~~-------------~D~ivVEGqGgl~~P~~-~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~ 299 (350)
T 2g0t_A 236 AVLKLE--KTG-------------KEIVFVEGQGALRHPAY-GQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPD 299 (350)
T ss_dssp HHHHHH--HTT-------------CSEEEEECCSCTTCTTT-HHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCC
T ss_pred hHHHhh--hcC-------------CCEEEEccCeeccccCc-hHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcC
Confidence 222222 233 59999999999999984 33478899999999888865 21 5 89
Q ss_pred HHHHHHHHHHHHhCCCcEEEEE-EcCCCCCCHHHHHHhhcCCCCeee
Q 002941 264 ISGTISAYESLKLRGYDVVAVV-FEDHGLVNEVPLMSYLRNRVPVLV 309 (863)
Q Consensus 264 i~~~~~~~~~~~~~~~~v~gvi-~n~~~~~~~~~~~~~~~~~~pvl~ 309 (863)
+++.+.+++.+. +.+|+|++ +|. ++. .++|+..
T Consensus 300 i~~~i~~ie~l~--~~~V~gi~~lN~---------~~~--~glP~~d 333 (350)
T 2g0t_A 300 FEEERRLIETLS--NAKVIGGVSLNG---------GFE--TDLPVYD 333 (350)
T ss_dssp HHHHHHHHHHSS--SCEEEEEECSSC---------CCC--CSSCEEC
T ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc---------hHH--HCCCeee
Confidence 999999999987 89999999 995 222 5777764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.5e-09 Score=119.12 Aligned_cols=210 Identities=10% Similarity=0.042 Sum_probs=116.0
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCCCc
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIPL 698 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~Pi 698 (863)
.++..+ ....|.+-+ +++|.++|++||++|++|+++.|+...+..+.....|+ ..|.+++ .|.+++- ...
T Consensus 245 vv~~~~--~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~ 317 (481)
T 4e1o_A 245 VCATLG--TTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDC 317 (481)
T ss_dssp EEEEBS--CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EEEecC--CCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-Cce
Confidence 344444 456676655 99999999999999999999966433333222222344 4698887 5988865 456
Q ss_pred eeeeccHH-HH-HhhhcCCccc---------ee---ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 002941 699 AATLATNA-VF-DSFVGDSKLK---------AL---LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (863)
Q Consensus 699 gav~~~~~-i~-~~l~~~~~~~---------~~---~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~ 764 (863)
|+++++++ .. +.+......- .. ....+.....+.+.++ |+.+..+. ++++.++...+.+++
T Consensus 318 g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~a---l~~~g~~g-~~~~~~~~~~~a~~l- 392 (481)
T 4e1o_A 318 TGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFV---IRSFGVKN-LQAHVRHGTEMAKYF- 392 (481)
T ss_dssp EEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHH-
T ss_pred EEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHH---HHHhHHHH-HHHHHHHHHHHHHHH-
Confidence 67766544 32 2222110000 00 0001111133444444 44432222 223333333344433
Q ss_pred HHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc-EEEe---cC-CEEEEecC-CCCcHH
Q 002941 765 LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV-YMRP---LG-NVIYLMCG-PCSSPE 837 (863)
Q Consensus 765 ~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV-~~~p---~g-~~lr~~pp-l~~t~e 837 (863)
.+.+.+.|.+.-+. ....++.+.+... .....++.+.|.++|+ ++.+ .| ..+|+... ..+|++
T Consensus 393 ---~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~ 462 (481)
T 4e1o_A 393 ---ESLVRNDPSFEIPAKRHLGLVVFRLKGP-------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRD 462 (481)
T ss_dssp ---HHHHHTCTTEECCSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred ---HHHHhcCCCeEEecCCceeEEEEEeCCc-------hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHH
Confidence 23344555433221 2334566666432 1246678889999884 4443 23 57888744 446899
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEF 853 (863)
Q Consensus 838 eid~~v~~L~~~l~~l 853 (863)
+|++++++|+++++++
T Consensus 463 di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 463 DILRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.5e-09 Score=118.90 Aligned_cols=213 Identities=13% Similarity=0.034 Sum_probs=119.7
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
++.++.-| .+..|.+-+ +++|.++|++||+++++|+++.|+-.....+.....|+ ..|.+++ .|.++.. +
T Consensus 237 ~~vv~~~~--~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~ 309 (486)
T 1js3_A 237 FFVVATLG--TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-F 309 (486)
T ss_dssp EEEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-S
T ss_pred eEEEEeCC--CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-c
Confidence 35555666 466777655 99999999999999999999965432221111111233 4688876 5988766 6
Q ss_pred CceeeeccHH--HHHhhhcCCcc-ce----------eec---ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHH
Q 002941 697 PLAATLATNA--VFDSFVGDSKL-KA----------LLH---GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (863)
Q Consensus 697 Pigav~~~~~--i~~~l~~~~~~-~~----------~~~---~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~ 760 (863)
..|+++++++ +.+.+...... .. +.. ..+.....+++. ++++.+..++ ++++.+....+.
T Consensus 310 ~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~---~al~~~g~~g-~~~~~~~~~~~a 385 (486)
T 1js3_A 310 DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMW---FVFRMYGVKG-LQAYIRKHVQLS 385 (486)
T ss_dssp SCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHH---HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHH---HHHHHHhHHH-HHHHHHHHHHHH
Confidence 7888888654 23444211000 00 000 001112234444 4444332222 333333344444
Q ss_pred HHHHHHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE-Ee--c-C-CEEEEec-CCC
Q 002941 761 ELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP--L-G-NVIYLMC-GPC 833 (863)
Q Consensus 761 ~~l~~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~-~p--~-g-~~lr~~p-pl~ 833 (863)
+++.+ .+.+.|.+.-+ ...+.++.+.+... ......+.+.|.++|+++ .+ . + +.+|+.. ...
T Consensus 386 ~~l~~----~L~~~~~~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 386 HEFEA----FVLQDPRFEVCAEVTLGLVCFRLKGS-------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHH----HHHHCTTEEECSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHHH----HHhcCCCeEEeCCCceeEEEEEecCh-------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 44433 33344544322 13455666666421 123567888898888654 32 1 2 5788874 445
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 002941 834 SSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 834 ~t~eeid~~v~~L~~~l~~l~ 854 (863)
+|+++|++++++|+++++++.
T Consensus 455 ~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-10 Score=123.40 Aligned_cols=202 Identities=10% Similarity=0.013 Sum_probs=123.1
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLggG~~ 696 (863)
++.+|++-.. .+..|....+ ++++ ||+++|+||+|. +|.. ...... -|++ +++|.+|. .
T Consensus 142 ~t~~v~~~~~-~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~~----~d~~~~s~~K~~g~--~ 202 (362)
T 2c0r_A 142 NAAYLHLTSN-ETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLNQ----FGLVYAGAQKNLGP--S 202 (362)
T ss_dssp TEEEEEEESE-ETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGGG----CSEEEEETTTTTCC--S
T ss_pred CcCEEEEeCC-cCccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchhH----CcEEEEeccccccC--c
Confidence 4555555544 7888886442 3333 899999999994 4322 111111 2776 45898862 1
Q ss_pred CceeeeccHHHHHhhhcCCcccee-------ecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDSKLKAL-------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~-------~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
-+|++++++++++.+....+ ..+ .....++.++.+++++.++|+.+++.+..++..+..+.+++.+.+.
T Consensus 203 G~G~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--- 278 (362)
T 2c0r_A 203 GVTVVIVREDLVAESPKHLP-TMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDA--- 278 (362)
T ss_dssp SCEEEEEEGGGSSSCCTTSC-GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH---
T ss_pred CcEEEEEcHHHHhhccccCc-hHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---
Confidence 26889999988766543110 000 0022346678888999999998754322344555555555554333
Q ss_pred HHhcCC-CeeEe----cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHH
Q 002941 770 QISSHR-TVQRV----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQ 841 (863)
Q Consensus 770 ~~~~~p-~v~~v----rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~ 841 (863)
+++.+ ..... ...+.++.+.+... ....++.+.|.++||.+.+. .+.+|++....+++|++++
T Consensus 279 -L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~ 349 (362)
T 2c0r_A 279 -IDQSGGFYRGCVDVDSRSDMNITFRLASE--------ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEA 349 (362)
T ss_dssp -HHTSTTSSEESSCGGGBCSSEEEEECSCH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHH
T ss_pred -HHHcCCccccCCChHHcCCcEEEEEcCCc--------chHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHH
Confidence 33444 21110 11234555655421 13567888999999988763 2569998777779999999
Q ss_pred HHHHHHHHHHH
Q 002941 842 LLLKLYQRLEE 852 (863)
Q Consensus 842 ~v~~L~~~l~~ 852 (863)
++++|++.+++
T Consensus 350 l~~~l~~~~~~ 360 (362)
T 2c0r_A 350 LVQFMEHFKRS 360 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-09 Score=119.58 Aligned_cols=290 Identities=11% Similarity=0.003 Sum_probs=159.0
Q ss_pred CcHHHHHHHHHHHHh---cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEE---eCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~---~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f---~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
|+++|.+|+.+.... +.......+...-..+|+++++++++. +..++ ++||++|+..++...++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~---e~alv~p~~~sGt~A~~~al~all~------- 114 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT---ESAFVRPHFVNGTHAIGAALFGNLR------- 114 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTCCSHHHHHHHHHHHTCC-------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC---CceEEeCCCCcHHHHHHHHHHHhcC-------
Confidence 568888888875322 111111233455578899999999984 45555 89999999988875521
Q ss_pred ccccccCCCccccccccEEEEec-CCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~-~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
+| ..||+.+ ..|+|.. ......+. .+...+ .. .|+....+|..
T Consensus 115 --pG------------D~Vl~~~~~~y~~~~-~~~g~~~~-~~~~~l-----~~-------------~G~~~~~v~~~-- 158 (427)
T 3hvy_A 115 --PN------------DTMMSICGMPYDTLH-DIIGMDDS-KKVGSL-----RE-------------YGVKYKMVDLK-- 158 (427)
T ss_dssp --TT------------CEEEECSSSCCGGGH-HHHTCCTT-CCSCCT-----GG-------------GTCEEEECCCB--
T ss_pred --CC------------CEEEEeCCCCchhHH-HHhccccc-hhhhHH-----HH-------------cCCEEEEecCC--
Confidence 12 5788888 6666542 10100000 000000 00 01111111100
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCceeCCHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRI 645 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fL~~ 645 (863)
+...| .+.+++.+.+ ..++.+|++|+ . .+..|.+. -+++
T Consensus 159 ------------------~~~~d--------~e~l~~~i~~------~~~tklV~i~~s~gyp-~nptg~v~----dl~~ 201 (427)
T 3hvy_A 159 ------------------DGKVD--------INTVKEELKK------DDSIKLIHIQRSTGYG-WRKSLRIA----EIAE 201 (427)
T ss_dssp ------------------TTBCC--------HHHHHHHHHH------CTTEEEEEEESSCCSS-SSCCCCHH----HHHH
T ss_pred ------------------CCCcC--------HHHHHHHhhC------CCCCEEEEEECCCCCC-CCccccHH----HHHH
Confidence 00012 2456666642 13577899998 5 56666443 4999
Q ss_pred HHHHHHH--cCCeEEEecccccccc-cCCcchhhhcCCCCcEE--EeccccCCCCCC-ceeeeccHHHHHhhhcCCccce
Q 002941 646 LVKECQN--RKIPVIFDEVFTGFWR-LGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVGDSKLKA 719 (863)
Q Consensus 646 Lrelc~~--~gilLI~DEV~TGfGR-tG~~~a~e~~gv~PDiv--t~sKgLggG~~P-igav~~~~~i~~~l~~~~~~~~ 719 (863)
|.++|++ ||+++|+||++..+ . ..... ....|++ +++|.++|+..| .|++++++++++.+..... .
T Consensus 202 i~~ia~~~~~g~~livD~a~~~~-~~~~~p~-----~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~--~ 273 (427)
T 3hvy_A 202 IIKSIREVNENVIVFVDNCYGEF-VEEKEPT-----DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVT--V 273 (427)
T ss_dssp HHHHHHHHCSSSEEEEECTTCTT-TSSSCGG-----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHS--C
T ss_pred HHHHHHHhCCCCEEEEECCcccc-ccCCCCc-----ccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhh--c
Confidence 9999999 89999999999533 3 11211 1235876 678999875445 4677889999998764100 0
Q ss_pred eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE----ecccceEEEEEEccCC
Q 002941 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR----VVALGTLCAIELQAAG 795 (863)
Q Consensus 720 ~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~----vrg~Gl~~~iel~~~~ 795 (863)
...+.+.+..+..+..++..|+.+ +...++..+++.++.+.| ++++.-.. -.+..+++.+.+.+.
T Consensus 274 ~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L--------~~~g~~V~p~~~~~~~~li~~~~l~~~- 342 (427)
T 3hvy_A 274 PGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIM--------ELAGFDVLPKYNDKRTDIIQAIKFNDE- 342 (427)
T ss_dssp TTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--------HHTTCEEESCTTSCCSSSEEEEECSSH-
T ss_pred CCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHH--------HhCCCeecCCCCCCCceEEEEEeCCCH-
Confidence 011112222122233444444432 234556666666666543 33343111 122334888888643
Q ss_pred cCCCCchHHHHHHHHHHHHC
Q 002941 796 CNAGYGSLYAASLLKKLRED 815 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~ 815 (863)
..+.++++.|...
T Consensus 343 -------~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 343 -------KKLIDFIKGIQTA 355 (427)
T ss_dssp -------HHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHhccc
Confidence 2567888888875
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-08 Score=116.97 Aligned_cols=216 Identities=10% Similarity=0.020 Sum_probs=116.6
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG~~ 696 (863)
+..+++.+ .+..|.+-+ +++|.++|++||+++++|+++.|.-..+..+.....|+ ..|.+++ .|.+++. .
T Consensus 236 ~~v~~~~~--~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~ 308 (475)
T 3k40_A 236 FYAVVTLG--TTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-F 308 (475)
T ss_dssp EEEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-S
T ss_pred EEEEEEec--CCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-C
Confidence 34455556 355677665 99999999999999999999965322222222212243 4698887 5988765 4
Q ss_pred CceeeeccHH-H-HHhhhcCCcc-c--------eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 002941 697 PLAATLATNA-V-FDSFVGDSKL-K--------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 697 Pigav~~~~~-i-~~~l~~~~~~-~--------~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
..|+++++++ . .+.+...... . .........+-+..+....++|+.+..++ ++++.++...+.+++.+
T Consensus 309 g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g-~~~~~~~~~~~a~~l~~ 387 (475)
T 3k40_A 309 DCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVEN-LQAHIRRHCNFAKQFGD 387 (475)
T ss_dssp SCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Confidence 6677776643 2 1222111000 0 00000000122223344445555543332 22333333344443332
Q ss_pred HHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE-Ee---cC-CEEEEecC-CCCcHHH
Q 002941 766 ELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP---LG-NVIYLMCG-PCSSPEV 838 (863)
Q Consensus 766 ~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~-~p---~g-~~lr~~pp-l~~t~ee 838 (863)
.+++.|.+.-+ .....++.+.+... .....++.+.|.++|.+. .+ .| ..+|+... ..+|+++
T Consensus 388 ----~L~~~~g~~l~~~~~~~iv~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~d 456 (475)
T 3k40_A 388 ----LCVADSRFELAAEINMGLVCFRLKGS-------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSED 456 (475)
T ss_dssp ----HHHHSTTEEESSCCBTTEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred ----HHhcCCCEEEecCCceEEEEEEeCCc-------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHH
Confidence 33444443222 12334566666432 124577888999888754 33 23 67888743 3469999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEFD 854 (863)
Q Consensus 839 id~~v~~L~~~l~~l~ 854 (863)
|++++++|+++++++.
T Consensus 457 i~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 457 MEYSWKEVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-09 Score=127.19 Aligned_cols=212 Identities=16% Similarity=0.117 Sum_probs=122.8
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc------chhhhcCCC-Cc-EEE--eccc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE------TTADLLGCV-PD-IAC--YGKL 690 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~------~a~e~~gv~-PD-ivt--~sKg 690 (863)
+.++..|. ..|.+.+ +++|.++|++||++||+||+|.+.-..+.. ...+.+|.. |+ +++ ++|+
T Consensus 284 lviv~~pn---~~G~v~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~ 356 (730)
T 1c4k_A 284 LAVIQLGT---YDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ 356 (730)
T ss_dssp EEEEESBC---TTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHH
T ss_pred EEEEECCC---CCCeecC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCC
Confidence 56667773 3677776 899999999999999999999632112221 111123431 22 554 4799
Q ss_pred cCCCCCCce-eeeccHHHH---------HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC---hhhHHhHHHHHH
Q 002941 691 LTGGVIPLA-ATLATNAVF---------DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD---PQTNHNIIPERR 757 (863)
Q Consensus 691 LggG~~Pig-av~~~~~i~---------~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~---~~l~~~l~~~~~ 757 (863)
|+| ...| ++..+++.+ ..+.. .+....+.+.++..+++..++++.+.. .++.+++.++.+
T Consensus 357 L~g--~~~gg~I~v~~~~l~g~~~~i~~~~~~~-----~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~ 429 (730)
T 1c4k_A 357 QAG--FSQTSQIHKKDSHIKGQLRYCDHKHFNN-----SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTI 429 (730)
T ss_dssp SSC--CTTCEEEEEECGGGTTSTTCCCHHHHHH-----HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CCC--CCCEEEEEecchhhcCcccccCHHHHHH-----HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 865 3443 443333221 11111 011223456678888888888887754 335566666666
Q ss_pred HHHHHHHHHHHHHHhcCCCee-----Ee-------------------------------cc--cce-E-----EEEEEcc
Q 002941 758 ILRELWDLELIQQISSHRTVQ-----RV-------------------------------VA--LGT-L-----CAIELQA 793 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~v~-----~v-------------------------------rg--~Gl-~-----~~iel~~ 793 (863)
++++.+. +. .+.+. .+ .+ .|. + +.+....
T Consensus 430 ~lr~~L~----~~---i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg 502 (730)
T 1c4k_A 430 EARKKLI----KA---GSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPG 502 (730)
T ss_dssp HHHHHHH----HT---TCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSS
T ss_pred HHHHHHh----hh---CCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCC
Confidence 6665442 20 11110 00 00 121 1 2333311
Q ss_pred ---CCcC-CCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 794 ---AGCN-AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 794 ---~~~~-~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.... ... ...+..+.+.|+++||++...+ ..+|++.++.+|+++++.++++|.+..+.++
T Consensus 503 ~~~~~g~~~~~-g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 503 INPETGDYEDF-GVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EETTTTEECSS-CCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccc-CCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 0000 000 1125678889999999998765 7899999999999999999999998887654
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-09 Score=121.14 Aligned_cols=218 Identities=10% Similarity=0.079 Sum_probs=125.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhh
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL 677 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~ 677 (863)
+.+++.+.+ .+ +..++++. |- ++..|.. ++.+.+++|.++|++||+++|.||++.+|...+. ......
T Consensus 162 ~~l~~~l~~-----~~-~~~~i~l~~~~-~NPTG~~-~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 162 DLFLNDLRN-----IP-NGSSVILQISC-YNPCSVN-IEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp HHHHHHHHH-----SC-SSCEEEECCSS-CTTTCCC-CCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred HHHHHHHHh-----CC-CCeEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence 445666643 12 22345554 44 7899954 5788899999999999999999999998853221 111211
Q ss_pred c-CCCCcEE---EeccccC-CCCCCceeee---ccHHHHHhhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhc-Chh
Q 002941 678 L-GCVPDIA---CYGKLLT-GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFK-DPQ 747 (863)
Q Consensus 678 ~-gv~PDiv---t~sKgLg-gG~~Pigav~---~~~~i~~~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~-~~~ 747 (863)
+ ...+.++ +|||.++ .| +.+|+++ .++++++.+...- . ..+..+++ .+.++.+++.++|+.-. .++
T Consensus 234 ~~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~l--~-~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 309 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNNL--C-FIVRKFYSSPVIHTNRILCQLLNNQNLKLN 309 (405)
T ss_dssp HHTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHHH--H-HHHHTTTSSCCHHHHHHHHHHHHCHHHHHH
T ss_pred HHhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHHH--H-HHHhcccCCCcHHHHHHHHHHhCCHHHHHH
Confidence 1 2234444 6899998 78 8999975 3677665543100 0 01123333 34566666666665200 122
Q ss_pred hHHhHHHH---HHHHHHHHHHHHHHHHh----cCCC---eeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 748 TNHNIIPE---RRILRELWDLELIQQIS----SHRT---VQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 748 l~~~l~~~---~~~l~~~l~~~l~~~~~----~~p~---v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
|.+.+.+. .+..++.+. +.+. +++. ...+...| +++.+.+.. +++..|.++|
T Consensus 310 ~~~~l~~~~~~~~~~R~~l~----~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L~~~g 372 (405)
T 3k7y_A 310 WIKELSQLSQRITNNRILFF----NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHLKTHH 372 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHHHHCC
Confidence 33444333 333444333 3333 3321 22233444 444443321 1234457889
Q ss_pred cEEEecCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 817 VYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 817 V~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
|++.|.+ ||.. ...++++|++++++|.++++.
T Consensus 373 V~v~p~~---Ris~-a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 373 IYIINNG---RINV-SGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp EECCTTS---EEEG-GGCCTTHHHHHHHHHHHHHHC
T ss_pred EeecCCC---eEEE-eccCHHHHHHHHHHHHHHHhh
Confidence 9999966 5541 246889999999999998764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=116.44 Aligned_cols=173 Identities=12% Similarity=0.085 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCceeCCHHHHHHHHHHHHH--cCCeEEEecccccccc-cCCcch
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWR-LGVETT 674 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fL~~Lrelc~~--~gilLI~DEV~TGfGR-tG~~~a 674 (863)
+.+++.+.+ ..++.+|++++ . .++.|.+. -+++|.++|++ ||+++|+||++..+ . .....
T Consensus 165 e~l~~~l~~------~~~tklV~i~~s~~~p-~nptg~i~----dl~~i~~la~~~~~g~~livD~a~~~~-~~~~~p~- 231 (427)
T 3i16_A 165 EEIEKVLKE------DESITLVHIQRSTGYG-WRRALLIE----DIKSIVDCVKNIRKDIICFVDNCYGEF-MDTKEPT- 231 (427)
T ss_dssp HHHHHHHHT------CTTEEEEEEECSCCSS-SSCCCCHH----HHHHHHHHHHHHCTTSEEEEECTTTTT-SSSSCGG-
T ss_pred HHHHHHhhC------CCCCEEEEEEcCCCCC-CCCcccHH----HHHHHHHHHHHhCCCCEEEEECCCccc-cccCCcc-
Confidence 456666642 13577888888 5 67777554 49999999999 99999999999533 2 11111
Q ss_pred hhhcCCCCcEE--EeccccCCCCCC-ceeeeccHHHHHhhhc--CCccceeecccCCCccH-HH-HHHHHHHHHHhcChh
Q 002941 675 ADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVG--DSKLKALLHGHSYSAHA-LG-CAAAAKSIKWFKDPQ 747 (863)
Q Consensus 675 ~e~~gv~PDiv--t~sKgLggG~~P-igav~~~~~i~~~l~~--~~~~~~~~~~~T~~~~p-la-~AAalAaL~~l~~~~ 747 (863)
....|++ +++|.++|+..| .|++++++++++.+.. ... ..+.+. .| .. +..++..|+.+ +.
T Consensus 232 ----~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~----~~g~~~--~~~~~~a~~~l~gl~~~--~~ 299 (427)
T 3i16_A 232 ----DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVP----GIGGEC--GSTFGVVRSMYQGLFLA--PH 299 (427)
T ss_dssp ----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT----TTGGGC--CCCTTCHHHHHHHHHHH--HH
T ss_pred ----ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccC----ccCccC--CccHHHHHHHHHHHHHH--HH
Confidence 1235776 678999875334 5778899999998764 110 011111 11 22 23333333332 33
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-----cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCC
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-----LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 816 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-----~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G 816 (863)
..++..+++.++.+.| ++++.-. ..+ ..+++.|++.+. ..+.++++.|....
T Consensus 300 r~~~~~~~a~~la~~L--------~~~g~~V-~p~~~~~~~~~i~~i~l~~~--------~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 300 ISMEALKGAILCSRIM--------ELAGFEV-MPKYDEKRSDIIQSIKFNDK--------DKLIEFCKGIQTGS 356 (427)
T ss_dssp HHHHHHHHHHHHHHHH--------HHTTCEE-ESCTTSCCSSSCEEEECSSH--------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH--------HhCCCee-cCCCCCCCccEEEEEEECCH--------HHHHHHHHHHhhcC
Confidence 4456666666665543 3344311 122 334888988643 25778899888763
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=122.52 Aligned_cols=209 Identities=10% Similarity=0.076 Sum_probs=114.1
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC---cchhhhc-CCCCcEE---EeccccC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLLT 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDiv---t~sKgLg 692 (863)
...++.-+= ++..|. .++.+.+++|.++|++|++++|+||++.||...+. .+....+ +..+.++ .|||.++
T Consensus 191 ~~vll~~~p-~NPtG~-~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 191 SVFILHQCA-HNPTGV-DPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp CEEEEESSS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred cEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc
Confidence 334555442 788885 55889999999999999999999999999953332 1222111 2223333 6799775
Q ss_pred -CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccH-HHHHHHHHHHHHhcChhh----HH---hHHHHHHHHHHHH
Q 002941 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA-LGCAAAAKSIKWFKDPQT----NH---NIIPERRILRELW 763 (863)
Q Consensus 693 -gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~p-la~AAalAaL~~l~~~~l----~~---~l~~~~~~l~~~l 763 (863)
-| +.+|++++..+..+....-..........+++..| .++.++...| .++.+ .+ .++++.+.+++.|
T Consensus 269 ~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l---~d~~l~~~~~~~~~~m~~r~~~~R~~l 344 (420)
T 4h51_A 269 LYS-ERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLIL---SNNELRKEWEAELSAMAERIRTMRRTV 344 (420)
T ss_dssp CGG-GCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-CceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35 89999887544333221100000001223444333 3333333333 24332 22 2333333444433
Q ss_pred HHHHHHHHhcCC--C-eeE-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHH
Q 002941 764 DLELIQQISSHR--T-VQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 764 ~~~l~~~~~~~p--~-v~~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eei 839 (863)
.+. +.+.. . ... ....|+|..+.+. .+.++.|.++||++.+.| ||.. ...+++.|
T Consensus 345 ~~~----L~~~g~~~~~~~i~~q~GmF~~~gls-------------~e~v~~L~e~~Vy~~~~g---Ris~-Agl~~~ni 403 (420)
T 4h51_A 345 YDE----LLRLQTPGSWEHVINQIGMFSFLGLS-------------KAQCEYCQNHNIFITVSG---RANM-AGLTHETA 403 (420)
T ss_dssp HHH----HHHTTCSSCCTHHHHCCSSEEECCCC-------------HHHHHHHHHTTEECCTTC---EEEG-GGCCHHHH
T ss_pred HHH----HHHhCCCCCCCeecCCCceEEecCcC-------------HHHHHHHHhCCEEEcCCC---EEEe-ccCCHHHH
Confidence 333 33322 1 111 2345666543332 123467889999998866 5542 25799999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLEEFDK 855 (863)
Q Consensus 840 d~~v~~L~~~l~~l~~ 855 (863)
+.+.++|.++++++.+
T Consensus 404 ~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 404 LMLAQTINDAVRNVNR 419 (420)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7e-09 Score=124.68 Aligned_cols=318 Identities=15% Similarity=0.108 Sum_probs=175.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCeEEEeCCh-hhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 441 VYEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 441 ~~~~~~eLae~L~~~~p~~~~~~v~f~~SG-SeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
++.+..++.++++++++ .++++|+++| +.||.+++.... ++ ..+||+- ...|.+
T Consensus 193 ~~g~i~eaE~~lA~~fG---a~~a~~v~nGts~An~~ai~al~-----------~p----------GD~VLv~-r~~H~S 247 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFN---ADRSYMVTNGTSTANKIVGMYSA-----------PA----------GSTILID-RNCHKS 247 (715)
T ss_dssp TBTHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHC-----------CT----------TCEEEEE-SSCCHH
T ss_pred CcHHHHHHHHHHHHHhC---CCCceEECcHHHHHHHHHHHHhC-----------CC----------CCEEEEC-CCccHH
Confidence 45678899999999998 4678887888 589988887652 11 1445555 445666
Q ss_pred ccccceecCCC-CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 520 TLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 520 t~gals~t~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
...++.++|.. .| +++.... -++.+ +.|. ..-|
T Consensus 248 ~~~~l~lsGa~pv~---------------v~~~~~~--~gi~~-~i~~----------------------~~~d------ 281 (715)
T 3n75_A 248 LTHLMMMSDVTPIY---------------FRPTRNA--YGILG-GIPQ----------------------SEFQ------ 281 (715)
T ss_dssp HHHHHHHSCCEEEE---------------ECCCBCT--TCCBC-CCCG----------------------GGGS------
T ss_pred HHHHHHHcCCEEEE---------------Eeccccc--ccccc-Cccc----------------------ccCC------
Confidence 55555554311 11 1000000 00000 0000 0001
Q ss_pred HHHHHHHHHHhcCCCCCCCCc---EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-
Q 002941 599 IYSSYISQNLLQNPGLKVSGC---IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT- 674 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~---iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a- 674 (863)
.+.+++.+++ +++. .+.|++.| +..|.+.+ +++|.++|++++ +|+||+|.+.-..|..+.
T Consensus 282 --~e~Le~~l~~-----~~~~k~p~~vivt~p---n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~ 345 (715)
T 3n75_A 282 --HATIAKRVKE-----TPNATWPVHAVITNS---TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG 345 (715)
T ss_dssp --HHHHHHHHHH-----STTCCSCSEEEEESS---CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred --HHHHHHHHhh-----CcCccCceEEEEECC---CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence 2456677753 1211 26777888 46787776 889999998774 799999963322343221
Q ss_pred hhh--cCCCCcEE-----EeccccCCCCCCceeeeccHHHHH-hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcC-
Q 002941 675 ADL--LGCVPDIA-----CYGKLLTGGVIPLAATLATNAVFD-SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD- 745 (863)
Q Consensus 675 ~e~--~gv~PDiv-----t~sKgLggG~~Pigav~~~~~i~~-~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~- 745 (863)
... .|..+|++ +++|+|+|= -..|.+.++.++.. .+.. .+....|.+.+++.+|+..++++++++
T Consensus 346 ~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~-----~~~~~~STSpsy~~~AsldaA~~~~~~~ 419 (715)
T 3n75_A 346 KCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNE-----AYMMHTTTSPHYGIVASTETAAAMMKGN 419 (715)
T ss_dssp SSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEESCCCHHHHHH-----HHHHTSCSSCCHHHHHHHHHHHHHHSHH
T ss_pred ccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCchhhHHHHHH-----HHHhhcCCCchHHHHHHHHHHHHHHHhh
Confidence 111 22236854 458998751 12345556554211 2221 123446778899999999999999863
Q ss_pred --hhhHHhHHHHHHHHHHHHHHHHHHHHhc--C----C-CeeEec----------------ccceE------EEEEEccC
Q 002941 746 --PQTNHNIIPERRILRELWDLELIQQISS--H----R-TVQRVV----------------ALGTL------CAIELQAA 794 (863)
Q Consensus 746 --~~l~~~l~~~~~~l~~~l~~~l~~~~~~--~----p-~v~~vr----------------g~Gl~------~~iel~~~ 794 (863)
+++.+++.++++++++.+.+. ...... . + .+.+.. +.+.+ +.|....-
T Consensus 420 ~g~~~~~~l~~~a~~~r~~L~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~ 498 (715)
T 3n75_A 420 AGKRLINGSIERAIKFRKEIKRL-RTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGM 498 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCB
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh-hhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCC
Confidence 457788888888888766432 110000 0 0 000000 00100 11111100
Q ss_pred CcCCCCc--hHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYG--SLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 795 ~~~~~~~--~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+....+. .-.+..+.+.|+++||.+--. .+.+.+..++..|+++++.++++|.+.-+.
T Consensus 499 ~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 499 EKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 0000000 012456778888999988643 477778888899999999999988766543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-08 Score=120.45 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=127.4
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhh-cCCCCcE------E--Eeccc
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL-LGCVPDI------A--CYGKL 690 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~-~gv~PDi------v--t~sKg 690 (863)
+.+++.|. ..|.+.+ +++|.++|++||++|++||+|.+.-..+..+ .... .|...|+ + +++|+
T Consensus 315 lvil~~pn---~~G~v~d----l~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~ 387 (755)
T 2vyc_A 315 YCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKL 387 (755)
T ss_dssp CEEEESSC---TTSEEEC----HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTS
T ss_pred EEEEECCC---CCceecC----HHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccc
Confidence 56777773 4677766 8999999999999999999996431222211 0111 2300232 3 55899
Q ss_pred cCCCCCC-ceeeeccHH--HH--HhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHH
Q 002941 691 LTGGVIP-LAATLATNA--VF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILREL 762 (863)
Q Consensus 691 LggG~~P-igav~~~~~--i~--~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~ 762 (863)
|+| .+ .|.+.++++ .. ..+.. .+....+.+.+.+.+++..++++.++++ ++.+++.++.+++++.
T Consensus 388 L~g--~~~g~~i~~~~~~~~i~~~~~~~-----~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~ 460 (755)
T 2vyc_A 388 LNA--LSQASYIHVREGRGAINFSRFNQ-----AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQA 460 (755)
T ss_dssp SSC--CTTCEEEEEECCBTCCCHHHHHH-----HHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC--cCCeeeeeecCcccccCHHHHHH-----HHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 875 33 455555543 11 12211 0112234567788888888899988664 4677788888888776
Q ss_pred HHHHHHHH-------HhcC-CCeeEecc---------------------------------------cc------eEEEE
Q 002941 763 WDLELIQQ-------ISSH-RTVQRVVA---------------------------------------LG------TLCAI 789 (863)
Q Consensus 763 l~~~l~~~-------~~~~-p~v~~vrg---------------------------------------~G------l~~~i 789 (863)
+.+.-.+. +.-. |. .+.+ .| ..+.+
T Consensus 461 L~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i 538 (755)
T 2vyc_A 461 MARLYKEFTADGSWFFKPWNKE--VVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSI 538 (755)
T ss_dssp HHHHHHHHHTTTCCCCEESSCS--EEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEE
T ss_pred HHhccccccccccceeeccCch--hccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEE
Confidence 64321100 1000 10 0100 12 22333
Q ss_pred EEccCCcCCCCc--hHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYG--SLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 790 el~~~~~~~~~~--~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
....-+....+. ...+..+.+.|.++||.+...+ +.++++.++..|+++++.++++|.+..+..+
T Consensus 539 ~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 539 LAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp ECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 332111000000 0123567888889999987544 8899999999999999999999988876553
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-09 Score=116.80 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=117.6
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHH-cC--CeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-CC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GG 694 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~-~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-gG 694 (863)
+.++..| ++..|.+.. +||++ |+ +++|.||++. ++.. ..... ..+ .+++ +|||.++ .|
T Consensus 160 ~v~l~~p--~NPtG~~~~---------~l~~~~~~~~~~ii~De~y~-~~~~-~~l~~-~~~--~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 160 IELVTSP--NNPDGTIRE---------TVVNRPDDDEAKVIHDFAYY-WPHY-TPITR-RQD--HDIMLFTFSKITGHAG 223 (391)
T ss_dssp EEEEESS--CTTTCCCCC---------CCC-----CCCEEEEECTTC-STTT-SCCCC-CBC--CSEEEEEHHHHHSCGG
T ss_pred EEEECCC--CCCCchhHH---------HHHHHhhcCCCEEEEeCCCC-CCCC-Ccccc-CCC--CeEEEEechhhcCCCc
Confidence 3445666 788888774 23444 66 9999999995 3211 11111 111 2333 7899886 67
Q ss_pred CCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc--------ChhhHHhHHHHHHHHHHHHHH
Q 002941 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--------DPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 695 ~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~--------~~~l~~~l~~~~~~l~~~l~~ 765 (863)
+.+|++++ ++++++.+... ....+++.++++..++.++|+.-. -+++.+++++..+..++.+.
T Consensus 224 -lRiG~~~~~~~~l~~~l~~~------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 295 (391)
T 3bwn_A 224 -SRIGWALVKDKEVAKKMVEY------IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLR- 295 (391)
T ss_dssp -GCEEEEEECCHHHHHHHHHH------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHH-
T ss_pred -cceEEEEecCHHHHHHHHHH------hcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHH-
Confidence 89999997 88998887641 122345678888888888887532 13345555555555555443
Q ss_pred HHHHHHhcCCCeeEe--------------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------CCE
Q 002941 766 ELIQQISSHRTVQRV--------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNV 825 (863)
Q Consensus 766 ~l~~~~~~~p~v~~v--------------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------g~~ 825 (863)
+.+.++|.+.-. ...|+++.+.+.+. ..+...|.++||.+.|+ .+.
T Consensus 296 ---~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-----------~~~~~~l~~~gV~v~pg~~fg~~~~~ 361 (391)
T 3bwn_A 296 ---EVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-----------TDLVSELRRHKVMSRAGERCGSDKKH 361 (391)
T ss_dssp ---HHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS-----------CCHHHHHHHTTEECEEGGGGTCCTTE
T ss_pred ---HHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH-----------HHHHHHHHHCCEEEccCCCCCCCCCE
Confidence 334444432211 23355677777532 12455677899999984 368
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+|+... .+++++++++++|.+++++
T Consensus 362 iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 362 VRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 898744 5899999999999887654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-08 Score=113.86 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=115.4
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEe--cccccccccCCcchhhhcCCCCcEEEe-ccccC---
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD--EVFTGFWRLGVETTADLLGCVPDIACY-GKLLT--- 692 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~D--EV~TGfGRtG~~~a~e~~gv~PDivt~-sKgLg--- 692 (863)
++.+|++.-. +..|.+.+ +++|.++|++||+++|+| +. ++|..... ..+ .+|++++ +|.++
T Consensus 196 ~t~~v~i~~p--n~tG~~~~----l~~i~~la~~~g~~vivd~d~~--a~g~~~~~---~~~--g~D~~~~s~kk~~~~~ 262 (438)
T 1wyu_A 196 EVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPL--SLGVLKPP---GAY--GADIAVGDGQSLGLPM 262 (438)
T ss_dssp TEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTT--GGGTBCCH---HHH--TCSEEEEECTTTTCCC
T ss_pred CeEEEEEECC--CCCeEEec----HHHHHHHHHHcCCEEEEEechh--hccCcCCC---ccC--CCCEEEECCcccCCCc
Confidence 4566666552 56787775 999999999999999955 33 24332222 223 3799887 47432
Q ss_pred --CCCCCceeeeccHHHHHhhhcCCc--------cceee------------cccCCCc---cHHHHHHHHHHHHHhcChh
Q 002941 693 --GGVIPLAATLATNAVFDSFVGDSK--------LKALL------------HGHSYSA---HALGCAAAAKSIKWFKDPQ 747 (863)
Q Consensus 693 --gG~~Pigav~~~~~i~~~l~~~~~--------~~~~~------------~~~T~~~---~pla~AAalAaL~~l~~~~ 747 (863)
+| ..+|++++++++.+.+..... ...+. ...|+.. +.++..++...+..+.+++
T Consensus 263 ~~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g 341 (438)
T 1wyu_A 263 GFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEG 341 (438)
T ss_dssp GGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHH
Confidence 33 357888999988776532100 00000 0122222 2232222223355443322
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEE--Eec--
Q 002941 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM--RPL-- 822 (863)
Q Consensus 748 l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~--~p~-- 822 (863)
.+++.+....+.+++. +.+++.+.+. +.+. ..+..+.+..+. ....+.+.|.++||.+ ++.
T Consensus 342 -~~~~~~~~~~~~~~l~----~~L~~~~g~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~gi~v~~~~~~~ 407 (438)
T 1wyu_A 342 -LREVALKSVEMAHKLH----ALLLEVPGVR-PFTPKPFFNEFALALPK--------DPEAVRRALAERGFHGATPVPRE 407 (438)
T ss_dssp -HHHHHHHHHHHHHHHH----HHHTTSTTCE-ECSCSSBCSEEEEECSS--------CHHHHHHHHHHTTCCCCEECCTT
T ss_pred -HHHHHHHHHHHHHHHH----HHHhcCCCeE-ECCCCCeEEEEEEeCCC--------CHHHHHHHHHHCCceeccccccc
Confidence 3344444445555443 3344554332 2222 222222232111 1567899999999998 442
Q ss_pred --CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 823 --GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 823 --g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
++.+|+++...+|++++++++++|++++
T Consensus 408 ~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 408 YGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 4789999888889999999999998754
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=97.56 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (863)
.+.+.+.++.+..+| |++||++.+++.. ....++...+ .+|+|+.....++.++...++.
T Consensus 98 ~~~l~~~l~~l~~~y-------------D~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~ 157 (237)
T 1g3q_A 98 PRKLPEVIKSLKDKF-------------DFILIDCPAGLQL------DAMSAMLSGE-EALLVTNPEISCLTDTMKVGIV 157 (237)
T ss_dssp GGGHHHHHHTTGGGC-------------SEEEEECCSSSSH------HHHHHHTTCS-EEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------CEEEEECCCCcCH------HHHHHHHHCC-eEEEEecCCcccHHHHHHHHHH
Confidence 345555555555555 9999999876542 2344444444 5899999998999999999999
Q ss_pred HHhCCCcEEEEEEcCCCC----CCHHHHHHhhcCCCCeee-cCCCCC
Q 002941 274 LKLRGYDVVAVVFEDHGL----VNEVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 274 ~~~~~~~v~gvi~n~~~~----~~~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
++..+.++.|+|+|++.. .....+.+. .+.|+++ ||+.+.
T Consensus 158 l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~ 202 (237)
T 1g3q_A 158 LKKAGLAILGFVLNRYGRSDRDIPPEAAEDV--MEVPLLAVIPEDPA 202 (237)
T ss_dssp HHHTTCEEEEEEEEEETSCTTCCCHHHHHHH--HCSCEEEEEECCHH
T ss_pred HHhCCCceEEEEEecCCcccchhHHHHHHHH--hCccceeeCCCChH
Confidence 998899999999998733 335556555 3789998 988654
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=9.9e-07 Score=93.37 Aligned_cols=88 Identities=8% Similarity=-0.062 Sum_probs=62.1
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHh-hhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC-------
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLY-RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL------- 291 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla-~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~------- 291 (863)
.+|++||++.+|+..+. ...++ ...+ .+|+|+.....++.++..+++.++..++++.|+|+|++..
T Consensus 128 ~yD~ViID~pp~~~~~~-----~~~~~~~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~ 201 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAP-----LTVMQDAKPT-GVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGH 201 (262)
T ss_dssp SCSEEEEECCSSSSSHH-----HHHHHHHCCS-EEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCC
T ss_pred CCCEEEEECcCCCchHH-----HHHHhhccCC-eEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCccccc
Confidence 46999999988764331 11111 1122 4888999999999999999999998899999999998631
Q ss_pred -------CCHHHHHHhhcCCCCeee-cCCCCC
Q 002941 292 -------VNEVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 292 -------~~~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
.....+.+. .+.|+++ ||+...
T Consensus 202 ~~~~~~~~~~~~~~~~--~g~~~~~~Ip~~~~ 231 (262)
T 2ph1_A 202 KSYIFGEGKGESLAKK--YNIGFFTSIPIEEE 231 (262)
T ss_dssp EECTTCCCCHHHHHHH--TTCSEEEECCBCHH
T ss_pred ccccccccHHHHHHHH--cCCCeEEEeeCchH
Confidence 224455554 4789998 877543
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-06 Score=95.69 Aligned_cols=229 Identities=10% Similarity=0.029 Sum_probs=134.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.+|+.|++ .+++.+++|+..|- .. +|..+.+ +++|.++|++||+++++||+|-+.-+....+..+.+..
T Consensus 203 e~le~aI~e----~ga~~i~~V~~Ttt-~y-~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G 273 (501)
T 3hl2_A 203 KAVEAKVQE----LGPDCILCIHSTTS-CF-APRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 (501)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEECS-CC-TTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCcEEEEEecCC-CC-CCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence 556777764 23578999998874 22 3333333 99999999999999999999944322222221222222
Q ss_pred CCcEEEec--cccCCCCCCceeeec---cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 681 VPDIACYG--KLLTGGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 681 ~PDivt~s--KgLggG~~Pigav~~---~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
..|+++.| |-+ +.|++..+. ++++++.+... .-.+.++.|.. ..+.++..+-.+++ .++.+.
T Consensus 274 rAD~vVqS~HK~l---lvpIGG~ii~~~d~e~l~~~~~~-------yPGr~S~Spsl--dl~~tLL~lGr~Gy-~~ll~e 340 (501)
T 3hl2_A 274 RIDAFVQSLDKNF---MVPVGGAIIAGFNDSFIQEISKM-------YPGRASASPSL--DVLITLLSLGSNGY-KKLLKE 340 (501)
T ss_dssp CCCEEEEEHHHHH---CCCSSCEEEEESCHHHHHHHHHT-------SCSCBCSHHHH--HHHHHHHHHHHHHH-HHHHHH
T ss_pred CCcEEEecccccc---eeecCceEEEeCCHHHHHHHHHh-------CCCCCCCcHHH--HHHHHHHHHHHHHH-HHHHHH
Confidence 58999987 543 355554332 56777765431 12333444433 23344443423333 333333
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcE---EEe----------
Q 002941 756 RRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY---MRP---------- 821 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~---~~p---------- 821 (863)
...+.++|.+.+.++...++ .+.+...--.-+++.+...... .......+...|+.++|- +.+
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~---~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~ 417 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEH---RDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGY 417 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT---TSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccccc---ccccHHHHHHHHHhcCCCcceeecCCCceEECCe
Confidence 44444555555555555554 3445555666777777654211 112356778888887662 211
Q ss_pred ----cC--------CEEEEecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 822 ----LG--------NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 822 ----~g--------~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+| .-+......-++++|||.++++|++++.++.+
T Consensus 418 ~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 418 TFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp EESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 34556666668999999999999999998764
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-07 Score=97.98 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.++.+.+.| |+|||.+..++.+ .....+++..+. +|+|+......+..+..+++.+
T Consensus 189 ~~l~~ll~~l~~~y-------------D~VIIDtpp~~~~-----~da~~l~~~aD~-vllVv~~~~~~~~~~~~~~~~l 249 (286)
T 3la6_A 189 ERFAELVNWASKNY-------------DLVLIDTPPILAV-----TDAAIVGRHVGT-TLMVARYAVNTLKEVETSLSRF 249 (286)
T ss_dssp HHHHHHHHHHHHHC-------------SEEEEECCCTTTC-----THHHHHTTTCSE-EEEEEETTTSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------CEEEEcCCCCcch-----HHHHHHHHHCCe-EEEEEeCCCCcHHHHHHHHHHH
Confidence 56666677777777 9999999543322 234455555555 8899999999999999999999
Q ss_pred HhCCCcEEEEEEcCCCC
Q 002941 275 KLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~ 291 (863)
++.|.++.|+|+|++..
T Consensus 250 ~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 250 EQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HHTTCCCCEEEEEEECC
T ss_pred HhCCCCEEEEEEcCccc
Confidence 99999999999998743
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=99.28 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHH
Q 002941 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (863)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (863)
.+.+.+.+..+...| |++||++.+++.. ....++...+ .||+|+.....++.++...++.
T Consensus 97 ~~~l~~~l~~l~~~y-------------D~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~ 156 (263)
T 1hyq_A 97 PEKLEDVLTQIMEST-------------DILLLDAPAGLER------SAVIAIAAAQ-ELLLVVNPEISSITDGLKTKIV 156 (263)
T ss_dssp HHHHHHHHHHHHHTC-------------SEEEEECCSSSSH------HHHHHHHHSS-EEEEEECSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhC-------------CEEEEeCCCCCCh------HHHHHHHHCC-EEEEEeCCChhHHHHHHHHHHH
Confidence 345555666666665 9999999876542 2334444444 7889999988899999999999
Q ss_pred HHhCCCcEEEEEEcCCCCCCH----HHHHHhhcCCCCeee-cCCCCCC
Q 002941 274 LKLRGYDVVAVVFEDHGLVNE----VPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 274 ~~~~~~~v~gvi~n~~~~~~~----~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
++..+.++.|+|+|++..... ..+.+. .+.|+++ ||+.+.+
T Consensus 157 l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~~ 202 (263)
T 1hyq_A 157 AERLGTKVLGVVVNRITTLGIEMAKNEIEAI--LEAKVIGLIPEDPEV 202 (263)
T ss_dssp HHHHTCEEEEEEEEEECTTTHHHHHHHHHHH--TTSCEEEEEECCHHH
T ss_pred HHhcCCCeeEEEEccCCcccccchHHHHHHH--hCCCeEEECCCCHHH
Confidence 988789999999999854432 333333 4789998 9886543
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-07 Score=91.91 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.+.++.++| |++||++.+++. . ....+....+. +|+|+.....+ ..+...++.+
T Consensus 63 ~~l~~~l~~l~~~y-------------D~viiD~~~~~~-~-----~~~~~l~~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 63 EKDVYGIRKDLADY-------------DFAIVDGAGSLS-V-----ITSAAVMVSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp HHHHHTHHHHTTTS-------------SEEEEECCSSSS-H-----HHHHHHHHCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-------------CEEEEECCCCCC-H-----HHHHHHHHCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 44555566655555 999999977652 2 23444444444 78888888888 8888888888
Q ss_pred HhC-----CCcEEEEEEcCCCCC--CHHHHHHhhcC-CCCee-e-cCCCCC
Q 002941 275 KLR-----GYDVVAVVFEDHGLV--NEVPLMSYLRN-RVPVL-V-LPPLPQ 315 (863)
Q Consensus 275 ~~~-----~~~v~gvi~n~~~~~--~~~~~~~~~~~-~~pvl-~-~p~~~~ 315 (863)
+.. +.++ ++|+|++... ....+++.++. +.|++ + ||....
T Consensus 122 ~~~~~~~~~~~~-~vv~N~~~~~~~~~~~~~~~l~~~~~~vl~~~Ip~~~~ 171 (206)
T 4dzz_A 122 LEAQAYSRKVEA-RFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQV 171 (206)
T ss_dssp HTTSCGGGCCEE-EEEECSBCTTEEEEHHHHHHHHHHTCCBCSSCCBCCHH
T ss_pred HHHHHhCCCCcE-EEEEeccCCCchHHHHHHHHHHHcCCceeeccccccHH
Confidence 753 3566 9999998532 22334444432 78888 6 776543
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-05 Score=89.42 Aligned_cols=230 Identities=11% Similarity=-0.002 Sum_probs=118.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (863)
+.+++.+++ .+.+.+++|++.|- ....|..-+ +++|.++|++||++|++||+|.+.-+....+.-+.+..
T Consensus 185 ~~le~aI~~----~~~~~~~~Vv~t~t-~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 185 KAVEAKIQE----LGPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCCEEEEEEECC-cCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 567777764 12357899999985 332334444 99999999999999999999954323211111122212
Q ss_pred CCcEEEec--cccCCCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 681 VPDIACYG--KLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 681 ~PDivt~s--KgLggG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
..|++++| |.+..- ..-+.+.. +++..+.+... +.+ +-+.+|. .. ..+++..+-.+. +.++.+...
T Consensus 256 ~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~------~~g-~~s~Sps-L~-l~~~l~~~G~~g-~~~~i~~~~ 324 (450)
T 3bc8_A 256 RIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKM------YPG-RASASPS-LD-VLITLLSLGCSG-YRKLLKERK 324 (450)
T ss_dssp CCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHH------SCS-CBCSHHH-HH-HHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCCEEEECCccCCCch-hccEEEEecCHHHHHHHHHH------hhc-CCcccHH-HH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 57999887 765433 33345554 55555554321 111 1223442 22 222222221122 233322222
Q ss_pred HHHHHHHHHHHHHHhcCCC-eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc-----------------EE
Q 002941 758 ILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV-----------------YM 819 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV-----------------~~ 819 (863)
.+.+++.+.+.+...++.. +.+....+.-.++.+..-.....+ ...++.-.++..|+ ++
T Consensus 325 ~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~---D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l 401 (450)
T 3bc8_A 325 EMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK---AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF 401 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSC---HHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred HHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccC---CCceeEEEecCCCCccceeeecccccchhHHHH
Confidence 2333333344444333331 222222222233444321101111 23455556666552 11
Q ss_pred Ee--------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 820 RP--------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 820 ~p--------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.. ....+.+..++..+++++++++++|++.+.++.
T Consensus 402 ~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~ 444 (450)
T 3bc8_A 402 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 444 (450)
T ss_dssp ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 126677787888999999999999999876654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=103.48 Aligned_cols=190 Identities=11% Similarity=0.056 Sum_probs=113.3
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-CCCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIP 697 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-gG~~P 697 (863)
+.+++.| ++..|.+.+ +. ++ ++..|.||++- ...-.... +....+++ +|||.++ .| +.
T Consensus 199 ~v~l~~p--~NPtG~~~~--~~-------l~--~~~~i~d~~~~--~~~~s~~~---~~~~~~i~~~S~SK~~g~~G-~R 259 (427)
T 2hox_A 199 IEMVTSP--NNPEGLLRH--AV-------IK--GCKSIYDMVYY--WPHYTPIK---YKADEDILLFTMSKFTGHSG-SR 259 (427)
T ss_dssp EEEEESS--CTTTCCCCC--CS-------ST--TCEEEEECTTC--STTTSCCC---SCBCCSEEEEEHHHHTSCGG-GC
T ss_pred EEEEcCC--CCCcccccH--HH-------Hc--CCCEEEeeccc--CCCCCccc---cCCCceEEEEeChhcCCCCC-ce
Confidence 4455566 788887776 32 22 56778888772 11101111 11123454 6799887 67 89
Q ss_pred ceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc---------ChhhHHhHHHHHHHHHHHHHHHH
Q 002941 698 LAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK---------DPQTNHNIIPERRILRELWDLEL 767 (863)
Q Consensus 698 igav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~---------~~~l~~~l~~~~~~l~~~l~~~l 767 (863)
+|++++ ++++++.+... ....+++.++++..++.++|+... -+++.++.++..+..++. +
T Consensus 260 iG~~~~~~~~l~~~l~~~------~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----l 329 (427)
T 2hox_A 260 FGWALIKDESVYNNLLNY------MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN----I 329 (427)
T ss_dssp CEEEEECCHHHHHHHHHH------HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH----H
T ss_pred EEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH----H
Confidence 999999 58998887641 122345677888887777776421 122233333333333333 3
Q ss_pred HHHHhcCCCeeE---------------ecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec------CCE
Q 002941 768 IQQISSHRTVQR---------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL------GNV 825 (863)
Q Consensus 768 ~~~~~~~p~v~~---------------vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~------g~~ 825 (863)
.+.+++.+.+.- ...-|+++.+.+..+ ...++..|+ ++||+++|+ .+.
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 399 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEASSRY 399 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTSCTTE
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCCCCCE
Confidence 445555543321 112267777888532 123556665 799999984 367
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 826 IYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 826 lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+|+... .+++++++++++|.++++
T Consensus 400 ~Ris~~--~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 400 VRLSLI--KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp EEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHh
Confidence 998754 588999999999988764
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=89.44 Aligned_cols=100 Identities=8% Similarity=-0.003 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.++.+...| |++||++.+++.. ....++...+. +|+|+.....++..+...++
T Consensus 104 ~~~~l~~~l~~l~~~y-------------D~viiD~p~~~~~------~~~~~l~~ad~-viiv~~~~~~~~~~~~~~~~ 163 (245)
T 3ea0_A 104 EPERVSDLIHIAASFY-------------DYIIVDFGASIDH------VGVWVLEHLDE-LCIVTTPSLQSLRRAGQLLK 163 (245)
T ss_dssp CHHHHHHHHHHHHHHC-------------SEEEEEEESSCCT------THHHHGGGCSE-EEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-------------CEEEEeCCCCCch------HHHHHHHHCCE-EEEEecCcHHHHHHHHHHHH
Confidence 4456666666666666 9999999765422 23344444333 77888888888999999999
Q ss_pred HHHhCC--CcEEEEEEcCCCCC---CHHHHHHhhcCCCCeee-cCCCC
Q 002941 273 SLKLRG--YDVVAVVFEDHGLV---NEVPLMSYLRNRVPVLV-LPPLP 314 (863)
Q Consensus 273 ~~~~~~--~~v~gvi~n~~~~~---~~~~~~~~~~~~~pvl~-~p~~~ 314 (863)
.++..+ ....|+|+|++... ..+.+++. .+.|+++ +|+.+
T Consensus 164 ~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~--~~~~v~~~ip~~~ 209 (245)
T 3ea0_A 164 LCKEFEKPISRIEIILNRADTNSRITSDEIEKV--IGRPISKRIPQDE 209 (245)
T ss_dssp HHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHH--HTSCEEEEECCCH
T ss_pred HHHHhCCCccceEEEEecCCCCCCCCHHHHHHH--hCCCeEEECCCCh
Confidence 998766 67799999998432 34566665 3789998 88865
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-07 Score=97.27 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.++.+.++| |+|||++..++.+. ...-+++..+ .+|+|+......++.+..+++.+
T Consensus 201 ~~l~~ll~~l~~~y-------------D~VIIDtpp~~~~~-----d~~~l~~~ad-~vilV~~~~~~~~~~~~~~~~~l 261 (299)
T 3cio_A 201 DRMRQLLEWANDHY-------------DLVIVDTPPMLAVS-----DAAVVGRSVG-TSLLVARFGLNTAKEVSLSMQRL 261 (299)
T ss_dssp HHHHHHHHHHHHHC-------------SEEEEECCCTTTCT-----HHHHHGGGCS-EEEEEEETTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------CEEEEcCCCCchhH-----HHHHHHHHCC-EEEEEEcCCCChHHHHHHHHHHH
Confidence 45566666666666 99999997654321 1223333333 57889999999999999999999
Q ss_pred HhCCCcEEEEEEcCCC
Q 002941 275 KLRGYDVVAVVFEDHG 290 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (863)
+..|.++.|+|+|++.
T Consensus 262 ~~~~~~~~GvVlN~~~ 277 (299)
T 3cio_A 262 EQAGVNIKGAILNGVI 277 (299)
T ss_dssp HHTTCCCCCEEEEECC
T ss_pred HhCCCCeEEEEEeCCc
Confidence 9999999999999874
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-06 Score=95.73 Aligned_cols=195 Identities=10% Similarity=0.018 Sum_probs=118.5
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|++.|- +|+++|+++++|=+|+ +|.. .+-.+.+| ++++| |.+| . .-+|++.+++++.+
T Consensus 164 ~tG~~~pi---------i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~g-p-~G~g~l~~~~~~l~ 225 (377)
T 3e77_A 164 VHGVEFDF---------IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNVG-S-AGVTVVIVRDDLLG 225 (377)
T ss_dssp TTTEECSS---------CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTTS-C-TTCEEEEEETTSCS
T ss_pred chheEchh---------hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEecccccC-C-CccEEEEEcHHHHh
Confidence 35777762 4789999999999995 5422 33444454 35554 8883 2 34677888887754
Q ss_pred hhhcCCc-cc---ee-ecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee--E--
Q 002941 710 SFVGDSK-LK---AL-LHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ--R-- 779 (863)
Q Consensus 710 ~l~~~~~-~~---~~-~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~--~-- 779 (863)
.+....+ .. .. ....++ +.+..++.+..++|+++.+.+=.+++.++.+.+.+++.+. +++.|.+. .
T Consensus 226 ~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~----L~~~~g~~~~~~~ 301 (377)
T 3e77_A 226 FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEI----IDNSQGFYVCPVE 301 (377)
T ss_dssp CCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH----HHTSTTSEECCSC
T ss_pred hccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH----HHhcCCceecCCC
Confidence 4332100 00 00 012233 3455677777888998865422456666666666655443 44444322 1
Q ss_pred e-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 780 V-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 780 v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
. ...+.++.+.+..-. ........+...+.++||.+++.. +.+|++.-..+|+||||.++++|++++++
T Consensus 302 ~~~rs~~ivsf~~~~~~----~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 302 PQNRSKMNIPFRIGNAK----GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GGGBCSSEEEEEESSTT----CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEEcCCCC----CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 112456777776421 001122457777889999987641 56999987788999999999999988754
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=94.12 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
+.+.+.++.+.++| |+|||++..++.+ .....+++..+ -+|+|+......+..+..+++.+
T Consensus 179 ~~l~~ll~~l~~~y-------------D~VIIDtpp~~~~-----~d~~~l~~~aD-~vilVv~~~~~~~~~~~~~~~~l 239 (271)
T 3bfv_A 179 RAFANLYDTLLMNY-------------NFVIIDTPPVNTV-----TDAQLFSKFTG-NVVYVVNSENNNKDEVKKGKELI 239 (271)
T ss_dssp HHHHHHHHHHHHHC-------------SEEEEECCCTTTC-----SHHHHHHHHHC-EEEEEEETTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------CEEEEeCCCCchH-----HHHHHHHHHCC-EEEEEEeCCCCcHHHHHHHHHHH
Confidence 45556666666666 9999999654432 22344555555 48899999999999999999999
Q ss_pred HhCCCcEEEEEEcCCCC
Q 002941 275 KLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~ 291 (863)
++.|.++.|+|+|++..
T Consensus 240 ~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 240 EATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HTTTCEEEEEEEEEECC
T ss_pred HhCCCCEEEEEEeCCcC
Confidence 99999999999998743
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-05 Score=89.40 Aligned_cols=190 Identities=8% Similarity=0.002 Sum_probs=118.7
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~ 709 (863)
..|.+.++ +|+ +|+++++|-+|+ +|.. .+-.+ ..|++++| |.+| - .-+|++.+++++.+
T Consensus 152 ~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p-~G~g~l~~~~~~~~ 212 (361)
T 3m5u_A 152 IYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-I-SGLSCIFIRKDMLE 212 (361)
T ss_dssp TTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-C-TTCEEEEEEHHHHH
T ss_pred CcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-C-CccEEEEEcHHHHh
Confidence 34777552 344 499999999994 5432 12222 24888776 8883 2 34788999999987
Q ss_pred hhhcC--Cccce---e-ecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe-eEe-
Q 002941 710 SFVGD--SKLKA---L-LHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV-QRV- 780 (863)
Q Consensus 710 ~l~~~--~~~~~---~-~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v-~~v- 780 (863)
.+... ..... . ....++ +.|..++.+..++|+++.+.+=.+++.++.+.+.+++.+. +++.+.+ ...
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~----L~~~~g~~~~~~ 288 (361)
T 3m5u_A 213 RSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC----IDLSNGFYKGHA 288 (361)
T ss_dssp HHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH----HHTSTTSEEESS
T ss_pred hhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH----HHHCCCeeeccC
Confidence 76531 10000 0 012232 3456677788889999876512456666666777655444 4445522 111
Q ss_pred --c-ccceEEEEEEcc-CCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 781 --V-ALGTLCAIELQA-AGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 781 --r-g~Gl~~~iel~~-~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
. ....++.+.+.. .. ....+...|.++||.+++.. ..+|+++...+|++|||.++++|++..++
T Consensus 289 ~~~~rs~~ivsf~~~~~~~--------~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 289 DKKDRSLMNVSFNIAKNKD--------LEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CGGGBCSSEEEEEESSCTT--------HHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHcCCeEEEEECCCchh--------hhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 1 123467777754 11 12357788889999987642 56999987788999999999999887654
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=98.80 Aligned_cols=179 Identities=10% Similarity=0.012 Sum_probs=105.7
Q ss_pred cCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCc-c---cee-ecccC
Q 002941 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSK-L---KAL-LHGHS 725 (863)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~-~---~~~-~~~~T 725 (863)
+|+++++|=+|+ +|.. ..-.+.+| ++++| |.+| - .-+|++.+++++.+.+....+ . ... ..+..
T Consensus 191 ~g~~~~vDa~qs-~g~~--pidv~~~~----~~~~s~hK~lG-P-~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~ 261 (386)
T 3qm2_A 191 PEVVVTADFSST-ILSA--PLDVSRYG----VIYAGAQKNIG-P-AGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSM 261 (386)
T ss_dssp TTCCEEEECTTT-TTSS--CCCGGGCS----EEEEETTTTTC-C-TTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC---
T ss_pred CCCEEEEEcccc-cCCC--CCCccccC----EEEEecccccC-C-CccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCC
Confidence 899999999994 5432 33344444 34443 8883 2 337788888887544332100 0 000 01111
Q ss_pred C-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE---ecc-cceEEEEEEccCCcCCCC
Q 002941 726 Y-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR---VVA-LGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 726 ~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~---vrg-~Gl~~~iel~~~~~~~~~ 800 (863)
+ +.|..++++..++|+++.+.+=.+++.++.+.+.+++.+.+ .+.+.... ... ...++.+.+.+..
T Consensus 262 ~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l----~~~~~~~~~~~~~~rs~~iv~f~~~~~~----- 332 (386)
T 3qm2_A 262 FNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVI----DNSDFYRNDVAQANRSRMNVPFQLADNT----- 332 (386)
T ss_dssp ----CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH----HTCSSEECCBCGGGBCSSEEEEEESSGG-----
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----HHCCCcccCCCHHHcCceEEEEECCCcc-----
Confidence 2 23445677778888888654224566666666666654443 33333221 111 2346777775321
Q ss_pred chHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
....+...|.++||.++... +.+|++....+|+||||.++++|++..++
T Consensus 333 ---~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 333 ---LDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ---GHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 12456677889999987641 45999987788999999999999987654
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=91.74 Aligned_cols=102 Identities=8% Similarity=0.042 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHH-ccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHH
Q 002941 192 VGDSKVIETLGKCLR-DGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270 (863)
Q Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~ 270 (863)
...+.+.+.+..+.. .| |++||++.+|+.. ....+....+ .||+|+.....++..+...
T Consensus 97 ~~~~~~~~~l~~l~~~~y-------------D~viiD~p~~~~~------~~~~~l~~ad-~vi~v~~~~~~s~~~~~~~ 156 (260)
T 3q9l_A 97 LTREGVAKVLDDLKAMDF-------------EFIVCDSPAGIET------GALMALYFAD-EAIITTNPEVSSVRDSDRI 156 (260)
T ss_dssp SCHHHHHHHHHHHHHTTC-------------SEEEEECCSSSSH------HHHHHHHTCS-EEEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCC-------------CEEEEcCCCCCCH------HHHHHHHhCC-EEEEEecCChhHHHHHHHH
Confidence 455667777777766 66 9999999765532 2223333222 4889999998999999999
Q ss_pred HHHHHhCCC--------cEEEEEEcCCCC------C--CHHHHHHhhcCCCCeee-cCCCCC
Q 002941 271 YESLKLRGY--------DVVAVVFEDHGL------V--NEVPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 271 ~~~~~~~~~--------~v~gvi~n~~~~------~--~~~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
++.++..+. ...++|+|++.. . ....+.+. .++|+++ ||+.+.
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ip~~~~ 216 (260)
T 3q9l_A 157 LGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEI--LRIKLVGVIPEDQS 216 (260)
T ss_dssp HHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHH--HCSEEEEEEECCHH
T ss_pred HHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHH--hCCceEEecCCChh
Confidence 998876542 578999998732 1 22555555 3799998 998654
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-06 Score=88.28 Aligned_cols=90 Identities=6% Similarity=-0.106 Sum_probs=56.8
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHhCCCc-EEEEEEcCCCC-CCHHHHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYD-VVAVVFEDHGL-VNEVPLM 298 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~~~~~-v~gvi~n~~~~-~~~~~~~ 298 (863)
+|++||.+..++.. .........+ -||+|+.....++..+...++.++..+.+ -+++|+|++.. .....+.
T Consensus 145 yD~viiD~pp~~~~------~~~~~l~~aD-~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~~~~~~~ 217 (267)
T 3k9g_A 145 YDYIVIDTNPSLDV------TLKNALLCSD-YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLF 217 (267)
T ss_dssp CSEEEEEECSSCSH------HHHHHHTTCS-EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTCSCCHHH
T ss_pred CCEEEEECcCCccH------HHHHHHHHCC-eEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcchHHHHH
Confidence 49999999665421 2222333222 37788888888888888888888766433 24699998832 2344556
Q ss_pred HhhcCCCCeee-cCCCCCCC
Q 002941 299 SYLRNRVPVLV-LPPLPQDS 317 (863)
Q Consensus 299 ~~~~~~~pvl~-~p~~~~~~ 317 (863)
+.++.+.|+++ ||+.+.+.
T Consensus 218 ~~l~~~~~~~~~Ip~~~~~~ 237 (267)
T 3k9g_A 218 EILKTKDRFLGTISEREDLN 237 (267)
T ss_dssp HHHTTSTTEEEEEEC-----
T ss_pred HHHhcCcccceecCcHHHHH
Confidence 66656899999 99988765
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.9e-06 Score=99.88 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=36.5
Q ss_pred CCeEEEE-eCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~-~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
++.|||+ ||.+++||++++++|++.|+ ++|++|.+||+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~-----~~g~~v~~~k~ 41 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMKL 41 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeeeec
Confidence 4679999 99999999999999999999 99999999997
|
| >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-05 Score=85.56 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=48.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC-CCC-------------HH---HHHHhhcCCCCeeecCCCCC
Q 002941 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVN-------------EV---PLMSYLRNRVPVLVLPPLPQ 315 (863)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~-~~~-------------~~---~~~~~~~~~~pvl~~p~~~~ 315 (863)
+++|+.....+++++..+++.++..|+++.|+|+|++. +.. .. .+.+.+ .++|+..+|..+.
T Consensus 224 ~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~-~~~~~~~vP~~~~ 302 (329)
T 2woo_A 224 FVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELY-EDFHVVKVPQVPA 302 (329)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEECCSS
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhc-CCCCEEEecCCCC
Confidence 89999999999999999999999999999999999875 221 01 122222 3678866998765
Q ss_pred C
Q 002941 316 D 316 (863)
Q Consensus 316 ~ 316 (863)
.
T Consensus 303 e 303 (329)
T 2woo_A 303 E 303 (329)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5e-06 Score=92.02 Aligned_cols=67 Identities=18% Similarity=0.001 Sum_probs=49.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCC---C----------HHHHHHhhc-CCCCeee-cCCCCC
Q 002941 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N----------EVPLMSYLR-NRVPVLV-LPPLPQ 315 (863)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~---~----------~~~~~~~~~-~~~pvl~-~p~~~~ 315 (863)
..+|+|+....-++..+..+++.+++.|+++.|+|+|+.... . ...+++.-+ -+.+.++ ||..+.
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~ 317 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRT 317 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSS
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 448999999999999999999999999999999999987432 1 111111100 2577777 999887
Q ss_pred CC
Q 002941 316 DS 317 (863)
Q Consensus 316 ~~ 317 (863)
..
T Consensus 318 e~ 319 (349)
T 3ug7_A 318 EA 319 (349)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.8e-06 Score=91.94 Aligned_cols=41 Identities=12% Similarity=-0.103 Sum_probs=37.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC
Q 002941 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~ 291 (863)
..+|+|+....-++..+..+++.++..|+++.|+|+|++..
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~ 263 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLP 263 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCcc
Confidence 46899999999999999999999999999999999998743
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.6e-05 Score=78.64 Aligned_cols=88 Identities=7% Similarity=-0.025 Sum_probs=59.9
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh-CCCcEEEEEEcCCCCCC---HHH
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGLVN---EVP 296 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~-~~~~v~gvi~n~~~~~~---~~~ 296 (863)
+|++||.+.+++..+ ....+....+ -+|+|+.....++..+...++.++. .+.+ .++|+|++.... ...
T Consensus 68 yD~viiD~p~~~~~~-----~~~~~l~~aD-~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE-----DLEALADGCD-LLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS-----HHHHHHHTSS-EEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHHHH
T ss_pred CCEEEEeCCCCcCcH-----HHHHHHHHCC-EEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHHHH
Confidence 399999997763333 2333444333 3778888888899999999999887 4666 789999985432 334
Q ss_pred HHHhhc-CCCCee-e-cCCCCC
Q 002941 297 LMSYLR-NRVPVL-V-LPPLPQ 315 (863)
Q Consensus 297 ~~~~~~-~~~pvl-~-~p~~~~ 315 (863)
+.+.++ .++|++ + ||+...
T Consensus 141 ~~~~l~~~g~~v~~~~Ip~~~~ 162 (209)
T 3cwq_A 141 ARQLLTTAGLPLFKRGIKRYSA 162 (209)
T ss_dssp HHHHHHHTTCCBCSSCCBCCTH
T ss_pred HHHHHHHcCCchhhccCCCcHH
Confidence 445443 378888 5 777543
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=83.75 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+.|.|+++..|+|||++++.|+.+|. ++|++|..+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la-----~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLA-----RLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHH-----HCCCCEEEEE
Confidence 5778999999999999999999999998 8899999987
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4.6e-05 Score=81.55 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=55.5
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcCCCCCCHH
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVNEV 295 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~----~~~~v~gvi~n~~~~~~~~ 295 (863)
.+|++||.+.|++.. .....-++...---+|+|+.....++..+...++.++. .+.++.|+|+|++......
T Consensus 118 ~yD~ViID~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 193 (289)
T 2afh_E 118 DLDFVFYDVLGDVVC----GGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED 193 (289)
T ss_dssp TCSEEEEEEECSSCC----TTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH
T ss_pred CCCEEEEeCCCcccc----chhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHH
Confidence 469999999764321 11111121111223788888887777777666666543 3788999999988543322
Q ss_pred HHHHhhc--CCCCeee-cCCCCCC
Q 002941 296 PLMSYLR--NRVPVLV-LPPLPQD 316 (863)
Q Consensus 296 ~~~~~~~--~~~pvl~-~p~~~~~ 316 (863)
...+.+. .+.|+++ ||....+
T Consensus 194 ~~~~~l~~~~g~~~l~~Ip~~~~~ 217 (289)
T 2afh_E 194 ELIIALANKLGTQMIHFVPRDNVV 217 (289)
T ss_dssp HHHHHHHHHHTSCEEEEECCCHHH
T ss_pred HHHHHHHHHcCccccccCCCchhH
Confidence 2222221 3789998 8876443
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=6.7e-06 Score=85.31 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=67.8
Q ss_pred HHHHHHHHH-HHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHH
Q 002941 196 KVIETLGKC-LRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (863)
Q Consensus 196 ~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~ 274 (863)
.+.+.+..+ ..+| |++||.+.+++.. .........+ -+|+|+.....++..+....+.+
T Consensus 119 ~l~~~l~~l~~~~y-------------D~viiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~~ 178 (254)
T 3kjh_A 119 FLGSVVSALFLDKK-------------EAVVMDMGAGIEH------LTRGTAKAVD-MMIAVIEPNLNSIKTGLNIEKLA 178 (254)
T ss_dssp HHHHHHHHHHHTCC-------------SEEEEEECTTCTT------CCHHHHTTCS-EEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-------------CEEEEeCCCcccH------HHHHHHHHCC-EEEEecCCCHHHHHHHHHHHHHH
Confidence 356666666 5555 9999999765532 2222232222 37888888888888888888888
Q ss_pred HhCCCcEEEEEEcCCCC-CCHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 275 KLRGYDVVAVVFEDHGL-VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 275 ~~~~~~v~gvi~n~~~~-~~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
+..++...++|+|++.. ...+.+++.+ .+.++.+ ||+.+.+
T Consensus 179 ~~~~~~~~~~v~N~~~~~~~~~~~~~~~-~~~~~~~~Ip~~~~~ 221 (254)
T 3kjh_A 179 GDLGIKKVRYVINKVRNIKEEKLIKKHL-PEDKILGIIPYNELF 221 (254)
T ss_dssp HHHTCSCEEEEEEEECCHHHHHHHHHHS-CGGGEEEEEECCHHH
T ss_pred HHcCCccEEEEEeCCCChhHHHHHHHHh-cCCcccccccCcHHH
Confidence 88888889999998853 2344556654 3578888 8885543
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.91 E-value=3.5e-05 Score=81.31 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh----CCCcEEEEEEcCCCCCC-H
Q 002941 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVN-E 294 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~----~~~~v~gvi~n~~~~~~-~ 294 (863)
.+|++||++.+++.. ......++...---+|+|+.....++..+...++.++. .+.++.|+|+|++.... .
T Consensus 115 ~yD~iiiD~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 190 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp TCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred CCCEEEEeCCchhhh----hhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhH
Confidence 469999999764321 11222232223334888888887788877766666653 26788999999884322 2
Q ss_pred HHHHHhhc-CCCCeee-cCCCCC
Q 002941 295 VPLMSYLR-NRVPVLV-LPPLPQ 315 (863)
Q Consensus 295 ~~~~~~~~-~~~pvl~-~p~~~~ 315 (863)
..+++..+ .+.|+++ ||+...
T Consensus 191 ~~~~~l~~~~~~~v~~~Ip~~~~ 213 (269)
T 1cp2_A 191 ELLDAFAKELGSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHHTCCEEEEECCCHH
T ss_pred HHHHHHHHHcCCcccccCCCCcH
Confidence 22222211 3789998 888644
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=97.89 E-value=2.7e-05 Score=90.34 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCeEEEE-eCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~-~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
++.|||+ ||.+++||++++++|++.|+ ++|++|.+||+
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~-----~~g~~v~~~k~ 50 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIKI 50 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeEeec
Confidence 4679999 99999999999999999999 99999999997
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7e-06 Score=97.16 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=51.8
Q ss_pred CCceEEEeCCCccccc----CCCC------------CcHhHHhhhc----CCCEEEEECCCCCcHHHHHHHHHHHHhCCC
Q 002941 220 MEILCIVETAGGVASP----GPSG------------SLQCDLYRPF----RLPGILVGDGRLGGISGTISAYESLKLRGY 279 (863)
Q Consensus 220 ~~d~~lvEGagg~~~p----~~~~------------~~~~dla~~l----~~pvilV~~~~~g~i~~~~~~~~~~~~~~~ 279 (863)
++|++||+++++...+ +++. ....++...+ -..+|+|+.....+++++..+++.++..|+
T Consensus 440 ~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~ 519 (589)
T 1ihu_A 440 GKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGI 519 (589)
T ss_dssp GTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCC
Confidence 4699999999874322 1100 0122333322 257999999999999999999999999999
Q ss_pred cEEEEEEcCCC
Q 002941 280 DVVAVVFEDHG 290 (863)
Q Consensus 280 ~v~gvi~n~~~ 290 (863)
++.|+|+|++.
T Consensus 520 ~~~gvVvN~~~ 530 (589)
T 1ihu_A 520 HPWGWIINNSL 530 (589)
T ss_dssp CCCEEEEEEES
T ss_pred CCCEEEEeCCc
Confidence 99999999873
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00018 Score=81.57 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++|+|. +|+||||+++.|+.+|. ++|++|..+.
T Consensus 100 p~vIlivG~-~G~GKTTt~~kLA~~l~-----~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGI-QGSGKTTTVAKLARYFQ-----KRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEEECc-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 346889998 99999999999999999 8999998876
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-05 Score=89.61 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=36.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCC
Q 002941 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL 291 (863)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~ 291 (863)
+|+|+.....+++++..+++.++..|+++.|||+|++..
T Consensus 201 vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 201 LVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred EEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 899999999999999999999999999999999998843
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=97.84 E-value=2e-05 Score=84.53 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=33.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|.|+++..|+|||++++.|+.+|. ++|++|..+.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G~~VlliD 40 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALL-----YGGAKVAVID 40 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 47999999999999999999999999 8899998876
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=78.78 Aligned_cols=66 Identities=11% Similarity=-0.093 Sum_probs=44.9
Q ss_pred CceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHHHHHh------CCCcEEEEEEcCCCCCC
Q 002941 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLVN 293 (863)
Q Consensus 221 ~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~~~~------~~~~v~gvi~n~~~~~~ 293 (863)
+|++||.+.+++.... .......+ -||+|+.....++..+...++.++. .++++.|+|+|++....
T Consensus 155 yD~IiiD~pp~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 155 YDLIIIDTVPTPSVYT------NNAIVASD-YVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp CSEEEEEECSSCSHHH------HHHHHHCS-EEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCEEEEECCCCccHHH------HHHHHHCC-eEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 4999999977653321 11112222 2778888888888887777777654 47899999999985543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00031 Score=79.83 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-CCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (863)
...|.|+|. +|+||||+++.|+.+|. ++ |++|..+.
T Consensus 100 ~~vI~ivG~-~GvGKTT~a~~LA~~l~-----~~~G~kVllvd 136 (433)
T 2xxa_A 100 PAVVLMAGL-QGAGKTTSVGKLGKFLR-----EKHKKKVLVVS 136 (433)
T ss_dssp SEEEEEECS-TTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HhcCCeEEEEe
Confidence 346888886 89999999999999998 77 99998877
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0018 Score=73.22 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=33.9
Q ss_pred CCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 30 ~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+. ....+.|+|. +|+||||++..|+..+. .+|.+|....
T Consensus 92 ~i~l~-~~~vi~i~G~-~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp CCCCC-SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred cccCC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 44444 3446888887 89999999999999998 7899998876
|
| >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0019 Score=71.43 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=35.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC
Q 002941 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (863)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~ 290 (863)
+|+|+.....++..+...++.|+..|+++.|+|+|++.
T Consensus 238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 89999999999999999999999999999999999875
|
| >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=73.41 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=51.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCCHHHHHHhhcCCCCeeecCCCCCC
Q 002941 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (863)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~~~~~~~~~~~~~pvl~~p~~~~~ 316 (863)
.-++||+....-++..+..+++.+++.|+++.|+|+|+ ++..+.+.+.+ .++||..+|..+..
T Consensus 215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~~l~~i~~~F-~~~~v~~vpl~~~e 277 (374)
T 3igf_A 215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQTEGDLSAEF-TPLSVTVVPDVTKG 277 (374)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CSCCCCCGGGS-TTSCEEECCCCBTT
T ss_pred eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HHHHHHHHHhc-CCCceEECCCCChh
Confidence 55899999999999999999999999999999999999 22333444443 47899889987765
|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=71.93 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=49.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCC-CC---C--------------HHHHHHhhcCC-CCeeecCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LV---N--------------EVPLMSYLRNR-VPVLVLPP 312 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~-~~---~--------------~~~~~~~~~~~-~pvl~~p~ 312 (863)
-+++|+....-.+..+.-+++.|++.|+++.|+|+|+.. ++ . .+.+.+.+ .+ +|+.-+|.
T Consensus 224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~-~~~~~~~~~pl 302 (334)
T 3iqw_A 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELY-DEEFNVVKMPL 302 (334)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHH-TTTSEEEEEEC
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhc-cCCCCEEEecC
Confidence 489999999889999999999999999999999999874 21 1 11222233 34 88888998
Q ss_pred CCCC
Q 002941 313 LPQD 316 (863)
Q Consensus 313 ~~~~ 316 (863)
.+.-
T Consensus 303 ~~~e 306 (334)
T 3iqw_A 303 LVEE 306 (334)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8664
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00059 Score=75.91 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++.|.|++.-.|+|||++|+.|+.+|. ++|++|..+-
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La-----~~g~rVlliD 179 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHA-----NMGKKVFYLN 179 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 4778999999999999999999999998 8899998876
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0028 Score=62.62 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=33.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+.+.|+| .+|+|||+++..|++.|. ++|++|+.+|
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~-----~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV-----REGWRVGTVK 39 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhH-----hcCCeeeEEE
Confidence 467899999 579999999999999998 8899999999
|
| >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.014 Score=64.24 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=48.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCCCCCC-----HH--------------HHHHhhcCCCCeeecCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN-----EV--------------PLMSYLRNRVPVLVLPP 312 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~~~~~-----~~--------------~~~~~~~~~~pvl~~p~ 312 (863)
-+|+|+....-.+..+..+++.++..|+++.|+|+|++.... .. .+.+.+ .++|+.-+|.
T Consensus 233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~-~~~~~~~~pl 311 (348)
T 3io3_A 233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELY-EDYHLVKMPL 311 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEC
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHc-cCCCEEEecC
Confidence 489999999889999999999999999999999999874321 11 122222 3678888888
Q ss_pred CCCC
Q 002941 313 LPQD 316 (863)
Q Consensus 313 ~~~~ 316 (863)
.+.-
T Consensus 312 ~~~e 315 (348)
T 3io3_A 312 LGCE 315 (348)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0089 Score=67.67 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...++++|. +|+||||++..|+..|. .+|.+|...-
T Consensus 97 ~~vI~lvG~-~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGV-QGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 346788887 79999999999999999 8899998765
|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.019 Score=63.38 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=34.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|.|++.-.|||||++|+.|+.+|. ++|+||..+-
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA-----~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFA-----LQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHH-----hCCCcEEEEE
Confidence 678999999999999999999999998 8999998876
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.038 Score=59.93 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|-|+| --||||||+|.-|+.+|. +.|+||..+-
T Consensus 48 aKVIAIaG-KGGVGKTTtavNLA~aLA-----~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYG-KGGIGKSTTSSNLSAAFS-----ILGKRVLQIG 83 (314)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEC-CCccCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 45788888 789999999999999999 9999998876
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.02 Score=64.67 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=103.8
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccH--------------
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATN-------------- 705 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~-------------- 705 (863)
++++|++|++.|++|++|=+|. |+--.|. +-. -+. ..|+||.+ |.|.| -.-|.+++++
T Consensus 220 ~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~ps-P~~-~ADvVTtTTHKTLrG--PrGG~Il~~~~~~~~~~k~~~~~~ 294 (490)
T 3ou5_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKV-IPS-PFK-HADIVTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIP 294 (490)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCC-GGG-TCSEEEEESSSTTCS--CSCEEEEEECSEEEECC--CCEEE
T ss_pred HHHHHHHHhhcccEEEechhhhhhhhcccc-cCC-ccc-cceEEeccccccccC--CCceEEEeccccccccccccchhH
Confidence 8999999999999999999975 3311121 111 111 26999765 99976 2344566655
Q ss_pred -HHHHhhhcCCccceeecccCCCcc-HHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 706 -AVFDSFVGDSKLKALLHGHSYSAH-ALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 706 -~i~~~l~~~~~~~~~~~~~T~~~~-pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
++.+.+.. ++ +-++.+|+ ...+||-..++....++ ++..++.++++.|.+.|.++. +..|.
T Consensus 295 ~~~~kkin~-----aV-FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G------~~vvs-- 360 (490)
T 3ou5_A 295 YTFEDRINF-----AV-FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG------YSLVS-- 360 (490)
T ss_dssp CCCHHHHHH-----HH-TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGG--
T ss_pred HHHHHHHHh-----hc-CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC------Ceeec--
Confidence 33444432 11 12223332 22333222223332233 345777788877776553322 22221
Q ss_pred ccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec------CCEEEEecCCC----CcHHHHHHHHHH
Q 002941 781 VAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL------GNVIYLMCGPC----SSPEVCSQLLLK 845 (863)
Q Consensus 781 rg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~------g~~lr~~ppl~----~t~eeid~~v~~ 845 (863)
.|. --++.+++.... .......+.|-+.||.+. |+ ...||+-.|.. +.++|++++.+.
T Consensus 361 GgTdnHlvLvDl~~~g-------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~ 433 (490)
T 3ou5_A 361 GGTDNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDF 433 (490)
T ss_dssp GSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCceEEEEeccccC-------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHH
Confidence 111 135566665432 014455667778899885 22 25789876664 478999999999
Q ss_pred HHHHHH
Q 002941 846 LYQRLE 851 (863)
Q Consensus 846 L~~~l~ 851 (863)
|.+++.
T Consensus 434 I~~~l~ 439 (490)
T 3ou5_A 434 IDEGVN 439 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988875
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.019 Score=66.31 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...|.|+|. +||||||++..|+..|. ++|++|...-
T Consensus 101 ~~vI~ivG~-~GvGKTTl~~kLA~~l~-----~~G~kVllVd 136 (504)
T 2j37_W 101 QNVIMFVGL-QGSGKTTTCSKLAYYYQ-----RKGWKTCLIC 136 (504)
T ss_dssp -EEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 346888998 79999999999999998 7899998775
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.13 Score=55.20 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.|+|. +|+||||++..|+..+.. ++|++|.+.-
T Consensus 105 g~vi~lvG~-~GsGKTTl~~~LA~~l~~----~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGS-TGAGKTTTLAKLAAISML----EKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEES-TTSSHHHHHHHHHHHHHH----TTCCCEEEEE
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHH----hcCCEEEEEe
Confidence 457899998 699999999999999871 3798888765
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.12 Score=56.19 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...+.|+|. +|+||||++..|+..+. ..|.+|...-
T Consensus 105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~-----~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGV-NGTGKTTSLAKMANYYA-----ELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 346899998 99999999999999998 7788887653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.70 E-value=0.14 Score=55.05 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=32.4
Q ss_pred CCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 31 LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 31 ~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+......+.|+|. +|+|||+++..|+..+. .+|.+|...-
T Consensus 92 i~~~~~~~vi~i~G~-~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGV-QGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp CSCSSSSEEEEEECS-SCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cccCCCCeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 444333446778885 89999999999999998 7788887654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.48 E-value=0.051 Score=61.53 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=31.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..+.|+|. +|+|||+++..|+..+. ++|++|.+.-
T Consensus 100 ~vI~ivG~-~GvGKTTla~~La~~l~-----~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGI-QGSGKTTTAAKLARYIQ-----KRGLKPALIA 134 (432)
T ss_dssp CCEEEECC-SSSSTTHHHHHHHHHHH-----HHHCCEEEEC
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 46899997 89999999999999998 8899998775
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=65.85 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCC-CCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~-~~~~g~~v~~~K 78 (863)
.++.|.|++.-.|+|||++|+.|+.+|..+. ..++|++|...-
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 4678999999999999999999999996100 002588887765
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.23 Score=53.18 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 30 ~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++.+. ....+.|+|. +|+|||+++..|+..+. ..|.+|...-
T Consensus 92 ~i~~~-~~~~i~i~g~-~G~GKTT~~~~la~~~~-----~~~~~v~l~~ 133 (295)
T 1ls1_A 92 LPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (295)
T ss_dssp CCCCC-SSEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eeecC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 44444 4456888885 79999999999999998 7788887653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.15 Score=50.88 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+.|+|+|. +|+||||++..|++.|.
T Consensus 24 ~~~~i~l~G~-~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGY-MGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHcC
Confidence 4567999998 99999999999998874
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=90.87 E-value=2.1 Score=49.04 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.+.|.|. +|+||||+...|+..++ ..+.+|.+.
T Consensus 295 VI~LVGp-NGSGKTTLl~~LAgll~-----~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLA 327 (503)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CcccHHHHHHHHHHHhh-----hcCCeEEEe
Confidence 5889999 79999999999999987 566677654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.19 Score=49.60 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.+.|+| -+|+|||++...|+..+. ..|++|+.+|
T Consensus 6 ~~~i~i~G-~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAA-WSGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (174)
T ss_dssp CCEEEEEC-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEe-CCCCCHHHHHHHHHHhcc-----ccCCceeEEe
Confidence 67899999 589999999999999998 7899999888
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.13 Score=50.65 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.+.|+| .+|+||||++..|++.+. ..|++++.+|.
T Consensus 2 ~~~v~IvG-~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~ 38 (171)
T 2f1r_A 2 SLILSIVG-TSDSGKTTLITRMMPILR-----ERGLRVAVVKR 38 (171)
T ss_dssp -CEEEEEE-SCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHhh-----hcCCceEEEEE
Confidence 56799999 689999999999999998 77889999984
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=89.57 E-value=0.29 Score=47.69 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
|+.|+|+|. .|+||||++..|++.|. ..|+.+.++
T Consensus 1 M~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~~~ 35 (194)
T 1nks_A 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKII 35 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCceEEEE
Confidence 456899998 89999999999999998 778888776
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=89.12 E-value=3.6 Score=44.49 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
..+.|.|. +|+||||+...|+..++ ..+.+|.+.
T Consensus 130 ~vi~lvG~-nGaGKTTll~~Lag~l~-----~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGF-NGSGKTTTIAKLANWLK-----NHGFSVVIA 163 (328)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 35888998 99999999999999998 667677654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=89.05 E-value=1.5 Score=47.05 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a-----~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH-----TTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 4777777799999999999998877 6788888885
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=88.78 E-value=1.2 Score=50.31 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a-----~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHH-----HTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHH-----HcCCEEEEEE
Confidence 3666666799999999999998887 6688999985
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=85.30 E-value=0.31 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. |++|||+++..|++.|.
T Consensus 42 lIvI~GP-TgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGA-TGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECS-TTSSHHHHHHHHHTTSC
T ss_pred eEEEECC-CCCCHHHHHHHHHHHCC
Confidence 6889999 99999999999988763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=84.73 E-value=0.86 Score=44.99 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|+|. +|+|||+++.+++..+. .+|.++.++.
T Consensus 55 ~~~~l~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS-FGVGKTYLLAAIANELA-----KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 46999997 89999999999999998 7788877754
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=0.83 Score=46.52 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (863)
.+++|+ -++|||+..++++..+. .+|++|..+||.-
T Consensus 31 ~vitG~-MgsGKTT~lL~~a~r~~-----~~g~kVli~k~~~ 66 (214)
T 2j9r_A 31 EVICGS-MFSGKSEELIRRVRRTQ-----FAKQHAIVFKPCI 66 (214)
T ss_dssp EEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEECC-
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEecc
Confidence 455554 59999999999999988 8899999999853
|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
Probab=84.69 E-value=0.7 Score=51.27 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCC-CCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~-~~~~g~~v~~~K 78 (863)
.++.|.|++.-.|+|||++|+.|+.+|..+. ..++|++|...-
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 4678999999999999999999999996100 001588987765
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=84.26 E-value=0.72 Score=46.04 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=31.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEccc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (863)
..+++|+ .++|||+..+.++..+. .+|++|..+||.
T Consensus 10 i~v~~G~-mgsGKTT~ll~~a~r~~-----~~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGP-MYSGKSEELIRRIRRAK-----IAKQKIQVFKPE 45 (191)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEec
Confidence 4666666 79999999999999988 889999999985
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.97 E-value=0.69 Score=44.94 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=23.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.++.|+|+|. +|+|||+++..|++.|.
T Consensus 4 ~~~~i~l~G~-~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGL-MGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECS-TTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 3567999999 99999999999998874
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=83.57 E-value=0.78 Score=46.99 Aligned_cols=37 Identities=22% Similarity=0.075 Sum_probs=31.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (863)
.++|+|. .|+|||+....++..+. .+|.+|.+++|..
T Consensus 14 i~litG~-mGsGKTT~ll~~~~r~~-----~~g~kVli~~~~~ 50 (223)
T 2b8t_A 14 IEFITGP-MFAGKTAELIRRLHRLE-----YADVKYLVFKPKI 50 (223)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEEEecc
Confidence 3566665 79999999999999888 7899999999853
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=0.93 Score=44.74 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=31.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEccc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (863)
.++|+|+ .|+|||+....++..+. .+|.+|.+++|.
T Consensus 5 i~vi~G~-~gsGKTT~ll~~~~~~~-----~~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGP-MYSGKTTELLSFVEIYK-----LGKKKVAVFKPK 40 (184)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCEEEEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEeec
Confidence 4778887 79999999999998887 789999999984
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=82.21 E-value=0.86 Score=43.38 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|..|+|+|. +|+||||++..|++.+.
T Consensus 1 M~~i~l~G~-~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 1 MTLIILEGP-DCCFKSTVAAKLSKELK 26 (173)
T ss_dssp -CEEEEECS-SSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 456889998 99999999999998763
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=81.43 E-value=1.1 Score=43.64 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.++|+|. .|+|||+++..|+..|. ..|.++.++.
T Consensus 15 ~i~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 48 (186)
T 2yvu_A 15 VVWLTGL-PGSGKTTIATRLADLLQ-----KEGYRVEVLD 48 (186)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEee
Confidence 5788888 89999999999999998 6787776664
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=81.09 E-value=11 Score=41.34 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.|.|. +|+|||+++..++..+. ..|.+|.|+-
T Consensus 63 i~~I~Gp-pGsGKSTLal~la~~~~-----~~gg~VlyId 96 (356)
T 3hr8_A 63 IVEIFGQ-ESSGKTTLALHAIAEAQ-----KMGGVAAFID 96 (356)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 4677776 99999999999999988 7788899985
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=80.57 E-value=10 Score=42.53 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.+.+.+-.+|+|||++++-++..... +.|.+|.||=
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~----~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAAL----KEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH----TTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH----hCCCeEEEEE
Confidence 36666666999999999999988761 3588898886
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=80.51 E-value=1.1 Score=44.12 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.8
Q ss_pred CCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 002941 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (863)
Q Consensus 29 ~~~~~~~~~~~~~i~~t~t~~GKT~v~~~L~~~l 62 (863)
+|...+..|..|+|+|. .|+|||+++..|++.+
T Consensus 7 ~~~~~~~~~~~I~l~G~-~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 7 QPAFSPDQVSVIFVLGG-PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp -CCSCTTTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCCCCCCCCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 34445556677899998 8999999999998875
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=80.41 E-value=10 Score=43.22 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=28.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCC-CCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (863)
.+.+.+-.+|+|||++++-++..+. .+ |.+|.||=
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a-----~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWG-----TAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHT-----TTSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHH-----HhcCCcEEEEe
Confidence 3566666699999999999999887 55 88999885
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=80.34 E-value=1.1 Score=42.86 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+.|+|+|. .|+|||+++..|++.|.
T Consensus 6 ~~~~i~l~G~-~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGF-MGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESC-TTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECC-CCCCHHHHHHHHHHHhC
Confidence 3678999998 89999999999998773
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=80.23 E-value=1.6 Score=42.20 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCcee
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFV 75 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~ 75 (863)
..|+|+|. +|+||||++..|.+.|. .+|+++.
T Consensus 4 ~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~ 35 (192)
T 1kht_A 4 KVVVVTGV-PGVGSTTSSQLAMDNLR-----KEGVNYK 35 (192)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCCE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hcCcceE
Confidence 35888898 89999999999999987 6665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 863 | ||||
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 4e-31 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 6e-31 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 1e-29 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 1e-22 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 4e-21 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 2e-16 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 1e-15 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 4e-09 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 5e-04 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (312), Expect = 4e-31
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 20/235 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 189 VAAFMVEPIQ-GEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 247
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PDI GK L+GG+ P++A L + + + K H +Y + LGC A +
Sbjct: 248 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI------KPGEHFSTYGGNPLGCRVAIAA 301
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
++ ++ N+ L + EL++ V V G L AI ++
Sbjct: 302 LEVLEE----ENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKET----- 350
Query: 800 YGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853
A + +LR++G+ +P G++I + + + + + + F
Sbjct: 351 -KDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 404
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 124 bits (311), Expect = 6e-31
Identities = 92/480 (19%), Positives = 156/480 (32%), Gaps = 91/480 (18%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
EN V+ + +++ D P ++ + + H F
Sbjct: 29 AENCRVWDVEGREYL----DFAGGIAVLNTGHLHP------KVVAAVEAQLKKLSHTCFQ 78
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 79 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA-------------- 124
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+A G+YHG T + +G+ M
Sbjct: 125 -----TKRSGTIAFSGAYHGRTHYTL---------------ALTGKVNPYSAGMGLMPGH 164
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ P L+ + + + D
Sbjct: 165 VYRALYPCPLHGISEDDAIASIHRIFKNDAAPED-------------------------- 198
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A++IEPV GG + P F + L C I +I DEV +G R G + +
Sbjct: 199 -IAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PD+ + K + GG PLA V D+ G +Y+ + + C AA +
Sbjct: 257 GVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG------LGGTYAGNPIACVAALE 309
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+K F+ + L++ H + V LG + AIEL G +
Sbjct: 310 VLKVFEQENLLQKANDLGQKLKDGLL----AIAEKHPEIGDVRGLGAMIAIELFEDGDHN 365
Query: 799 GYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 855
+ A ++ + R+ G+ + G NV+ ++ Q L + Q +E +
Sbjct: 366 KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 119 bits (300), Expect = 1e-29
Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A I+EP+ G+ + + + + C+ + + DEV TG R G
Sbjct: 187 VCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
PD+ GK L+GG P++A LA + + K HG +Y + L + ++
Sbjct: 246 VKPDVILLGKALSGGHYPISAVLANDDIMLVI------KPGEHGSTYGGNPLAASICVEA 299
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
+ + + N E L +++ + V+ V G LCAIE + N
Sbjct: 300 LNVLINEKLCENAEKLGGPFLE----NLKRELKDSKIVRDVRGKGLLCAIEFKNELVN-- 353
Query: 800 YGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854
+ KL+E+G+ R + I L C + E + + + ++ FD
Sbjct: 354 -----VLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 99.3 bits (246), Expect = 1e-22
Identities = 112/497 (22%), Positives = 163/497 (32%), Gaps = 91/497 (18%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMT--SPLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ +
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADS------- 111
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+ L + K + L + YHGDT GAM P
Sbjct: 112 ----GSVAVEVAMKMALQYWQAKGEARQRF----LTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
L + + P + EW +V + R EI
Sbjct: 164 LWKGYL---------PENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI--------- 205
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
A+IIEP+V AGGM M P + + + K C I
Sbjct: 206 -------------------------AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE 300
Query: 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775
+HG ++ + L CAAA S+ + + LRE
Sbjct: 301 -AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL-----APARDAE 354
Query: 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 835
V V LG + +E A+L K E GV++RP G +IYLM
Sbjct: 355 MVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLMPPYIIL 406
Query: 836 PEVCSQLLLKLYQRLEE 852
P+ +L + + +++
Sbjct: 407 PQQLQRLTAAVNRAVQD 423
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 94.0 bits (233), Expect = 4e-21
Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 38/245 (15%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A+I+EPV GG+ P F R + Q + +I DE+ TG R G + G
Sbjct: 178 TAAVILEPVQ-GEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG 236
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKS 739
VPDI K L GGV A + G HG ++ + L +
Sbjct: 237 IVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG-------HGTTFGGNPLAM-----A 284
Query: 740 IKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG 799
+ ER W +E ++ I ++ V +G + +EL+
Sbjct: 285 AGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKA---- 339
Query: 800 YGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEE 858
A + + +E V G VI + P V + E+ ++V E
Sbjct: 340 -----APYIARLEKEHRVLALQAGPTVIRFLP-----PLVIEK---------EDLERVVE 380
Query: 859 KLKSC 863
+++
Sbjct: 381 AVRAV 385
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 80.3 bits (197), Expect = 2e-16
Identities = 66/453 (14%), Positives = 126/453 (27%), Gaps = 94/453 (20%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
++ + N++I D +W P+ +++A + G +
Sbjct: 41 VKDAYAWDVDGNRYI----DYVGTWGPAICGHAHPEVIEALKVAMEKGTS-----FGAPC 91
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
A + + F ++G+ A L++ + G+
Sbjct: 92 ALENVLAEMVNDAV------PSIEMVRFVNSGTEACMAVLRLMRA-----------YTGR 134
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
D K++ +G YHG + T P V +
Sbjct: 135 D--------KIIKFEGCYHGHADMFLVKAGSGVATLG-----------LPSSPGVPKKTT 175
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
L+ P + +F E
Sbjct: 176 ANTLTTPYNDLEAV-----------KALFAENPGE------------------------- 199
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I +I+EP+V G + D F L + ++FDEV TGF +
Sbjct: 200 -IAGVILEPIV-GNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-AYGGVQEKF 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PD+ GK++ GG+ A + + + + S + L A K
Sbjct: 257 GVTPDLTTLGKIIGGGLPV-GAYGGKREIMQLV---APAGPMYQAGTLSGNPLAMTAGIK 312
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+++ + P T + + L + + + Q G +A
Sbjct: 313 TLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDA 372
Query: 799 GYGSLYAASLL-KKLREDGVYMRPLGNVIYLMC 830
L S + + E G+Y+ P
Sbjct: 373 KKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTS 405
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 77.8 bits (190), Expect = 1e-15
Identities = 54/359 (15%), Positives = 100/359 (27%), Gaps = 16/359 (4%)
Query: 500 TTEKCIELKVLALKGSYHG-DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+ ++L + G D + A S +G+ + + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 140
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
S K V + + F + + SG
Sbjct: 141 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 200
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A I EP++ + GG+ + + L ++C+ R + +I DE TG R G
Sbjct: 201 NLAAFIAEPILSS-GGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 259
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAK 738
G PDI K L G+ A + + H
Sbjct: 260 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFY---TTHVSDPLPAAVGLRVL 316
Query: 739 SIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA 798
+ N++ +R L+ + + V G L +E+
Sbjct: 317 DVVQRDGLVARANVMGDR------LRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTK 370
Query: 799 GYGSLYAASLLKKLREDGVYM-----RPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852
A + ++ G+ M +G V + S + L L Q +E
Sbjct: 371 EPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 57.7 bits (138), Expect = 4e-09
Identities = 66/485 (13%), Positives = 121/485 (24%), Gaps = 80/485 (16%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ N+ + D + + G P ++ +++ R + P
Sbjct: 42 SRGNYLVDVDGNRML----DLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILP 97
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
+ + E LL V S+ GS + E A K F + F +
Sbjct: 98 PENF--VEKLRESLLS-VAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKE 154
Query: 499 DTTEKCIEL-------KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551
+ I +L+ G++HG T+G + +
Sbjct: 155 ELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD---------- 204
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
+ L P + K + ++ E +
Sbjct: 205 --WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK--------------------- 241
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV--FTGFWRL 669
+ A II + + GG + F R L + + DEV G
Sbjct: 242 --YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK 299
Query: 670 GVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH 729
L D+ + K + T F +
Sbjct: 300 FWAHEHWGLDDPADVMTFSK-----------KMMTGGFFHKEEFRPNAPYRIFNTWLGDP 348
Query: 730 ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789
+ A ++ ++ + +L L DL Q + + RV GT C+
Sbjct: 349 SKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL----QARYPQFISRVRGRGTFCSF 404
Query: 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848
+ L+ R GV + G I L
Sbjct: 405 DTPDES--------IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSD 456
Query: 849 RLEEF 853
L +F
Sbjct: 457 ILADF 461
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 5e-04
Identities = 47/421 (11%), Positives = 88/421 (20%), Gaps = 95/421 (22%)
Query: 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLG 522
+ G A +I + + +K EK ++ K++A + T G
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKKR--------------EQEKGLDRSKMVAFSNYFFDTTQG 137
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
+ G + Y F N E L I E
Sbjct: 138 HSQ------INGCTVRNVYIKEAFDTGVRYDFKGNFD-----LEGLERGIEEVGPNNV-- 184
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
I+ + + G V
Sbjct: 185 ---------------------------------------PYIVATITSNSAGGQPVSLAN 205
Query: 643 QRILVKECQNRKIPVIFDE------VFTGFWRLGVETTADLLGCVPDIACY--------G 688
+ + + IPV+ D + R + + Y
Sbjct: 206 LKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAK 265
Query: 689 KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA-AKSIKWFKDPQ 747
K + L + + +Y G A + +
Sbjct: 266 KDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD 325
Query: 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS 807
I + + L + E+ V G L A
Sbjct: 326 WLAYRIAQVQYLVD-GLEEIGVVCQQAGGHAAFVDAGKLLPH-------IPADQFPAQAL 377
Query: 808 LLKKLREDGVYMRPLGNVI--YLMCGPCSSPEVCSQLLLKLYQR---LEEFDKVEEKLKS 862
+ + G+ +G+ + P L L + + D + E K
Sbjct: 378 ACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437
Query: 863 C 863
Sbjct: 438 V 438
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 863 | |||
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.97 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.94 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.87 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 99.85 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.83 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.82 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.65 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.61 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.6 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.59 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.58 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.56 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.53 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.51 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.5 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.48 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.48 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.45 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.44 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.44 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.42 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.42 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.4 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.38 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.37 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.37 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.36 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.35 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.34 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.33 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.31 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.29 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.27 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.25 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.23 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.18 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.18 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.14 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.14 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.13 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 98.92 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 98.88 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 98.86 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 98.85 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.85 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 98.84 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 98.79 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 98.77 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 98.76 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.72 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 98.69 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.66 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.64 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.63 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 98.63 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 98.55 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.52 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.48 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 98.48 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 98.39 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 98.26 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 98.26 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.24 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 98.23 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 98.21 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.11 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.09 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.05 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 98.04 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 97.95 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.88 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 97.76 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 97.74 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 97.62 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 97.59 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 97.54 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 97.42 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 97.2 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 97.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.71 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.52 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.45 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.26 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 96.25 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 96.19 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.69 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.35 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.88 | |
| d2g0ta1 | 338 | Hypothetical protein TM0796 {Thermotoga maritima [ | 94.13 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.97 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.58 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.6 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.22 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.06 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.8 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.63 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.05 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.57 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 88.62 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 87.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 87.03 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 85.41 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 84.54 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 83.03 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 82.95 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 82.7 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 80.39 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 80.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.32 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 80.05 |
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-73 Score=643.95 Aligned_cols=417 Identities=28% Similarity=0.400 Sum_probs=346.1
Q ss_pred hhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc
Q 002941 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (863)
Q Consensus 356 ~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~ 435 (863)
.+.+|+||||+++... .++.+|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++.|+
T Consensus 8 ~d~~h~~~p~~~~~~~--~p~~~i~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~ 78 (429)
T d1s0aa_ 8 FDQRHILHPFTSMTSP--LPVYPVVS--AEGCELILSDGR----RLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSSC--CCCEEEEE--EEBTEEEETTSC----EEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCC
T ss_pred HHHHhcCCCcccCCCC--CCCcceEE--eECCEEEECCCC----EEEECcccHHHHhhcC-CcHHHHHHHHHHHHhcCCc
Confidence 6678999999987543 34556776 788999999999 9999999999999999 8999999999999999988
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCC
Q 002941 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (863)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~s 515 (863)
++..+.+++..+|+++|++.+|.+ +++|+|++|||||||.|+|+| |+|+..+|. + +.+||+|+++
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~f~~sGseA~e~A~k~a-r~~~~~~g~--~-----------~~~ii~~~~~ 143 (429)
T d1s0aa_ 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKGE--A-----------RQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHTC--C-----------CCEEEEETTC
T ss_pred ccCCccchHHHHHHHHHHhhhccC-cceeeeccccccchhhhhhhh-hheeecccc--c-----------ccEEEEecCC
Confidence 766788999999999999999876 789999999999999999999 678777663 2 3689999999
Q ss_pred CccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchh
Q 002941 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (863)
Q Consensus 516 YHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 595 (863)
|||+|.+++++++...++... .. ...++ ....+.+... .....+...
T Consensus 144 yHG~t~~a~~~t~~~~~~~~~----~~----~~~~~-------~~~~~~~~~~------------------~~~~~~~~~ 190 (429)
T d1s0aa_ 144 YHGDTFGAMSVCDPDNSMHSL----WK----GYLPE-------NLFAPAPQSR------------------MDGEWDERD 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGGG----GT----TTSCC-------CEEECCCCSB------------------C-CCCCGGG
T ss_pred ccccchhhhhhcCCccccccc----cC----ccccc-------cccccccccc------------------cccccchhh
Confidence 999999999999866554321 10 00000 1111211110 000011111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh
Q 002941 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (863)
Q Consensus 596 ~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~ 675 (863)
...+++.+.. .+++|||||+||+.+++||+++||++|+++|+++|++||++||+|||+|||||||++|++
T Consensus 191 -----~~~~~~~~~~-----~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~ 260 (429)
T d1s0aa_ 191 -----MVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFAC 260 (429)
T ss_dssp -----GHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred -----hhhhhhhhhh-----cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccccc
Confidence 1234444432 468999999999845888999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 676 e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
+++|+.|||+|+||+|+|||+|+|++++++++++.+... ....+.|++||++||++||||+++|++++++++.+++.+.
T Consensus 261 ~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~-~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~ 339 (429)
T d1s0aa_ 261 EHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG-EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADI 339 (429)
T ss_dssp GGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTS-TTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccceecccccccccccccccccccchhhHHHHHhccCCC-CCcceeecCCCCCCcccchhhhccccccccccccchhhHH
Confidence 999999999999999999999999999999999998753 2356789999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSS 835 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t 835 (863)
++++++.| .+ +.+++.|.+|||.|+|+++++..+. ....+...|+++||++++.|+.++|+||+++|
T Consensus 340 g~~l~~~L----~~-l~~~~~v~~vrg~Gl~~~~e~~~~~--------~~~~~~~~~~~~Gl~~~~~g~~i~~~Ppl~it 406 (429)
T d1s0aa_ 340 EVQLREQL----AP-ARDAEMVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLMPPYIIL 406 (429)
T ss_dssp HHHHHHHH----GG-GGGCTTEEEEEEETTEEEEEESSCB--------CHHHHHHHHHHTTEECCCBTTEEEECCCTTCC
T ss_pred HHHHHHHH----HH-hccCCceEEEeecccEEEEEecCcc--------cHHHHHHHHHHCCcEEEecCCEEEEeCCcCCC
Confidence 88888755 22 4568899999999999999998653 25678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002941 836 PEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 836 ~eeid~~v~~L~~~l~~l 853 (863)
++|||+++++|+++|+++
T Consensus 407 ~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 407 PQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-71 Score=633.96 Aligned_cols=417 Identities=23% Similarity=0.304 Sum_probs=339.4
Q ss_pred ChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHh
Q 002941 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (863)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~ 431 (863)
++.+++.++++..+.+ .-|++|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|+++
T Consensus 5 ~l~~r~~~~~~~g~~~------~~P~~~~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~ 71 (425)
T d1sffa_ 5 ELMQRRSQAIPRGVGQ------IHPIFADR--AENCRVWDVEGR----EYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKK 71 (425)
T ss_dssp HHHHHHHHHSCTTBCC------SEEEEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCCCC------CCCceEEE--EecCEEEeCCCC----EEEEcCcCHHhhcccC-CcHHHHHHHHHHHhh
Confidence 3455555555544332 23667776 788999999999 9999999999999999 899999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEE
Q 002941 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (863)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~ 511 (863)
+.+.++..+.+++..+|+++|++.+|....++|+|+||||||||+|+|+| |.| ++| ++||+
T Consensus 72 ~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~a-r~~-------t~r-----------~~ii~ 132 (425)
T d1sffa_ 72 LSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAA-------TKR-----------SGTIA 132 (425)
T ss_dssp CSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHH-------HTC-----------CEEEE
T ss_pred cCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHh-hhh-------hcc-----------cceEe
Confidence 99877667789999999999999998655679999999999999999999 667 454 78999
Q ss_pred ecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhccc
Q 002941 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (863)
Q Consensus 512 ~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (863)
++++|||+|.+++++++...++... ... .|. .....++|... .
T Consensus 133 ~~~~yHG~t~~~~~~t~~~~~~~~~--------~~~--~~~-----~~~~~~~~~~~----------------------~ 175 (425)
T d1sffa_ 133 FSGAYHGRTHYTLALTGKVNPYSAG--------MGL--MPG-----HVYRALYPCPL----------------------H 175 (425)
T ss_dssp ETTCCCCSSHHHHHHSSCCTTTTTT--------SCC--CCS-----SEEEECCCBGG----------------------G
T ss_pred ecCCCcCccccchhhcCCCCcccCC--------ccc--ccC-----CccccCCcccc----------------------c
Confidence 9999999999999999865443211 000 000 11112222111 0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC
Q 002941 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (863)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~ 671 (863)
+... .......++.+.. ....+++||||+||| ||++|+++||++||+.|+++|++||++||+|||+|||||+|.
T Consensus 176 ~~~~--~~~~~~~~~~~~~---~~~~~~vaavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~ 249 (425)
T d1sffa_ 176 GISE--DDAIASIHRIFKN---DAAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT 249 (425)
T ss_dssp TBCH--HHHHHHHHHHHHH---TCCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred cccc--hhhHHHHHHHHHh---cccccceEEEEecCc-cCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch
Confidence 0000 0001112222221 235678999999997 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHh
Q 002941 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (863)
Q Consensus 672 ~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~ 751 (863)
+|+++++|+.|||+|+||+|||| +|+|++++++++++.+... .|++||++||++||||+++|++++++++.++
T Consensus 250 ~~a~~~~gv~PDi~~~gK~l~gG-~P~~av~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~ 322 (425)
T d1sffa_ 250 LFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG------GLGGTYAGNPIACVAALEVLKVFEQENLLQK 322 (425)
T ss_dssp SSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCTT------SBCCSSSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHhcCCCccceecccccCCC-cceEEEEEcHHHHHhhCCC------CCCCCCCcCHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999 5999999999999988653 5899999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEE
Q 002941 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYL 828 (863)
Q Consensus 752 l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~ 828 (863)
+...++++.+. +.++++++|.+.+|||.|+|++++|..+.............+.+.|+++||++.+.+ +.++|
T Consensus 323 ~~~~g~~l~~~----l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~ 398 (425)
T d1sffa_ 323 ANDLGQKLKDG----LLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 398 (425)
T ss_dssp HHHHHHHHHHH----HHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEE
T ss_pred hhhhhhhhhhh----hhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEE
Confidence 88888777764 466778999999999999999999986542223344567889999999999998764 89999
Q ss_pred ecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 829 MCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 829 ~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+||+++|++|||+++++|++++++++
T Consensus 399 ~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 399 LVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998875
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=2.3e-70 Score=625.13 Aligned_cols=403 Identities=20% Similarity=0.231 Sum_probs=329.1
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+++|++++.|.. ..+.+++..+||++|++
T Consensus 23 ~P~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~la~~L~~ 94 (431)
T d1zoda1 23 EPMIIER--AKGSFVYDADGR----AILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLAN 94 (431)
T ss_dssp CSSCCCE--EEBTEEECTTCC----EEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHH
T ss_pred CCCeEEE--eecCEEEECCCC----EEEEcccCHHhhhhcC-CCHHHHHHHHHHHhhccccc-cccccHHHHHHHHHHHH
Confidence 3567776 788999999999 9999999999999999 89999999999999998864 46789999999999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
.++++ +++|+|+||||||||+|||+| |+| +|| ++|+.|+++|||+|.+++++++...+..
T Consensus 95 ~~~~~-~~~v~f~~sGseA~e~Alk~A-r~~-------t~r-----------~~i~~~~~~yHG~t~~~~~~~~~~~~~~ 154 (431)
T d1zoda1 95 ITPPG-LDRALLLSTGAESNEAAIRMA-KLV-------TGK-----------YEIVGFAQSWHGMTGAAASATYSAGRKG 154 (431)
T ss_dssp HSCTT-CCEEEEESCHHHHHHHHHHHH-HHH-------HTC-----------CEEEEETTCCCCSSHHHHHTCCSSCCSS
T ss_pred hCCcc-cceeeecccccchHHHHHHHH-HHh-------cCC-----------cceeecccccccccchhhcccccccccc
Confidence 98765 799999999999999999999 667 454 7899999999999999999987554321
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
. ++. ..+..+++.|..+.. ......+.... ...+.+...+..
T Consensus 155 ~---------~~~--------~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~~~---- 196 (431)
T d1zoda1 155 V---------GPA--------AVGSFAIPAPFTYRP---------------RFERNGAYDYL--AELDYAFDLIDR---- 196 (431)
T ss_dssp S---------CCC--------CTTEEEECCCCTTSC---------------CCEETTEECHH--HHHHHHHHHHHH----
T ss_pred c---------CCc--------ccCceeeeeeccccc---------------ccccccchhhh--hhHHHHHHHHHH----
Confidence 1 111 023344555543310 00000000011 112333333332
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
.++++|||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||++|+++++|++|||+|+||+||||
T Consensus 197 ~~~~~iAavi~EPi-~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG 275 (431)
T d1zoda1 197 QSSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG 275 (431)
T ss_dssp HCCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT
T ss_pred hccccccceeeccc-cccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccccccccc
Confidence 35789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|++++++++++++.+... ...|++||++||++|||++++|++++++++.+++.+.++++.+ .+.+.+.++
T Consensus 276 -~p~~av~~~~~~~~~~~~~----~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~----~l~~~~~~~ 346 (431)
T d1zoda1 276 -LPLAAIVTSAAIEERAHEL----GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRR----GLLDLMERF 346 (431)
T ss_dssp -SSCEEEEECHHHHHHHHHT----TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HHHHHHHHC
T ss_pred -cccceeeeeecchhhhhcc----cccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhh----hhhhhhhcC
Confidence 6999999999999887643 2468999999999999999999999888888888877777766 446677889
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE-----ecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-----PLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~-----p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
|.|.+|||.|+|++|+|..+.....+....+..+.+.|+++|++.+ +.+++++++||+++|++|||+++++|+++
T Consensus 347 ~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~a 426 (431)
T d1zoda1 347 DCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQA 426 (431)
T ss_dssp TTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999986542222333467789999999998643 24689999999999999999999999999
Q ss_pred HHHH
Q 002941 850 LEEF 853 (863)
Q Consensus 850 l~~l 853 (863)
|+++
T Consensus 427 l~~v 430 (431)
T d1zoda1 427 IERA 430 (431)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-69 Score=607.38 Aligned_cols=397 Identities=19% Similarity=0.243 Sum_probs=328.1
Q ss_pred cChhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHH
Q 002941 351 CDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAA 430 (863)
Q Consensus 351 ~~~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~ 430 (863)
+.+.++++++.||+|.. -|++|++ |+|+|+||.||+ +|||+++|+|++++|| +||+|++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~~~p-------~P~~i~~--~~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~i~~Av~~q~~ 71 (404)
T d2byla1 6 DDIFEREYKYGAHNAHP-------LPVALER--GKGIYLWDVEGR----KYFDFLSSISAVNQGH-CHPKIVNALKSQVD 71 (404)
T ss_dssp HHHHHHHHHHBCSCCCC-------EEEEEEE--EEBTEEEETTCC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCC-------CCceEEE--eecCEEEECCCC----EEEEecCCHHHHhhcC-CCHHHHHHHHHHHh
Confidence 44566777777776521 2556766 788999999999 9999999999999999 89999999999999
Q ss_pred hcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEE
Q 002941 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (863)
Q Consensus 431 ~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II 510 (863)
++.+.+. .+.++...+++++++++.+ .++++|++|||||||.|+|+| |+|+.+.+... ..+.+|+
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sGseA~e~Aik~a-r~~~~~~~~~~----------~~~~~i~ 136 (404)
T d2byla1 72 KLTLTSR-AFYNNVLGEYEEYITKLFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGIQ----------KYKAKIV 136 (404)
T ss_dssp TCCCCCT-TEEESSHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCCC----------TTCCEEE
T ss_pred hCCCccc-ccccchHHHHHHhhhhccc---ccccccccCccccchhHHHHH-HHHhhhccccc----------ccccccc
Confidence 9887653 3567778889999988876 579999999999999999999 56654433211 1147999
Q ss_pred EecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcc
Q 002941 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (863)
Q Consensus 511 ~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (863)
.+.++|||+|.++++.++.+.++.. +.++. +++..++++
T Consensus 137 ~~~~~~hg~t~~~~~~~~~~~~~~~--------~~p~~--------~~~~~~p~~------------------------- 175 (404)
T d2byla1 137 FAAGNFWGRTLSAISSSTDPTSYDG--------FGPFM--------PGFDIIPYN------------------------- 175 (404)
T ss_dssp EETTCCCCCSHHHHTTCCCHHHHTT--------SCSCC--------TTEEEECTT-------------------------
T ss_pred ccCCCccccccceeccCCCcccccC--------CCCCC--------CCeeEeccc-------------------------
Confidence 9999999999999998875544321 11111 122222222
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccC
Q 002941 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (863)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG 670 (863)
| .+.+++.++ .+++||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||+|
T Consensus 176 -d--------~~~l~~~l~-------~~~iAaviiEPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G 238 (404)
T d2byla1 176 -D--------LPALERALQ-------DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG 238 (404)
T ss_dssp -C--------HHHHHHHHT-------STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred -C--------HHHHHHhcC-------CCCeEEEEECCc-cCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccc
Confidence 2 245666664 368999999998 99999999999999999999999999999999999999999
Q ss_pred CcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHH
Q 002941 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (863)
Q Consensus 671 ~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~ 750 (863)
++|+++++|++|||+||||+|+||++|+|++++++++++.+.. ..|++||+|||++||||+|+|++++++++.+
T Consensus 239 ~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~ 312 (404)
T d2byla1 239 RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP------GEHFSTYGGNPLGCRVAIAALEVLEEENLAE 312 (404)
T ss_dssp SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCC------CCCCcCCCcCHHHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999999999999999999999999998864 3589999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEe
Q 002941 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLM 829 (863)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ 829 (863)
++.+.++++++.+ .++ ..+.|.+|||.|+|++|++.+.... .+..+..+|+++||++.+. +++++|+
T Consensus 313 ~~~~~g~~l~~~l----~~l--~~~~i~~vRg~Gl~~~i~~~~~~~~------~~~~~~~~l~~~Gvl~~~~~~~~i~l~ 380 (404)
T d2byla1 313 NADKLGIILRNEL----MKL--PSDVVTAVRGKGLLNAIVIKETKDW------DAWKVCLRLRDNGLLAKPTHGDIIRFA 380 (404)
T ss_dssp HHHHHHHHHHHHH----HTS--CTTTEEEEEEETTEEEEEECCCSSC------CHHHHHHHHHHTTEECEEEETTEEEEC
T ss_pred hhhHhhHHHHHHH----Hhh--ccccceeeeecccEEEEEEecCCch------hHHHHHHHHHhCCeEEecCCCCEEEEE
Confidence 8888877777644 332 4567999999999999999764311 2567888999999999875 6899999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
||+++|++|||+++++|+++|.+
T Consensus 381 PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 381 PPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999864
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.9e-68 Score=595.06 Aligned_cols=366 Identities=20% Similarity=0.240 Sum_probs=313.8
Q ss_pred eEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhh
Q 002941 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (863)
Q Consensus 376 ~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (863)
|++|++ |+|+|+||.||| +|||+++|+|++++|| +||+|++|+.+|++++.+.+ ..+.+++..+|+++|.+.
T Consensus 20 p~~i~r--a~G~~l~d~dG~----~ylD~~~g~~~~~lGh-~hp~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 91 (387)
T d1vefa1 20 DLLIVR--GQGARVWDAEGN----EYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAI 91 (387)
T ss_dssp SSCEEE--EEBTEEEETTSC----EEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHT
T ss_pred CceEEE--eEcCEEEECCCC----EEEEcchhHHhhhhcC-CcHHHHHHHHHHHHhhcccc-cccCCchHHHHHHHhhhh
Confidence 456776 788999999999 9999999999999999 89999999999999987654 346789999999999998
Q ss_pred cCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCC
Q 002941 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (863)
Q Consensus 456 ~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~ 535 (863)
.+.+ +++|+|++|||||||.|||+| |.| ++| ++||+++++|||+|.+++++++.+.++..
T Consensus 92 ~~~~-~~~v~f~~sGseA~e~Aik~A-r~~-------t~r-----------~~ii~~~~~yHG~t~~~~~~s~~~~~~~~ 151 (387)
T d1vefa1 92 LPPE-LNRVFPVNSGTEANEAALKFA-RAH-------TGR-----------KKFVAAMRGFSGRTMGSLSVTWEPKYREP 151 (387)
T ss_dssp SCTT-EEEEEEESSHHHHHHHHHHHH-HHH-------HSC-----------CEEEEETTCCCCSSHHHHHTCCCHHHHGG
T ss_pred cccc-ceeeccccCchHHHHHHHHHH-Hhh-------ccc-----------ceecccccCCCCCccceEeccCCccccCC
Confidence 8865 689999999999999999999 667 354 79999999999999999999886544321
Q ss_pred CcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 002941 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (863)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~ 615 (863)
+.+.. ..+.++|++ | .+.+++.+
T Consensus 152 --------~~p~~--------~~~~~~p~~--------------------------d--------~~~l~~~~------- 174 (387)
T d1vefa1 152 --------FLPLV--------EPVEFIPYN--------------------------D--------VEALKRAV------- 174 (387)
T ss_dssp --------GCSCS--------SCEEEECTT--------------------------C--------HHHHHHHC-------
T ss_pred --------CCCCC--------CCceEeCCC--------------------------C--------HHHHHHhc-------
Confidence 11111 112233322 2 13455554
Q ss_pred CCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCC
Q 002941 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (863)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~ 695 (863)
.++|||||+||| ||++|+++++++||++|+++|++||++||+|||+|||||+|++|+++++|++|||+|+||+|+||
T Consensus 175 -~~~iAavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG- 251 (387)
T d1vefa1 175 -DEETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG- 251 (387)
T ss_dssp -CTTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT-
T ss_pred -CCCeEEEEEECC-CCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeecccCCCC-
Confidence 357999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
+|++++++++++++.+.. ..|++||++||++||||+++|++++++++.+++.+.++++++.+ .++ .++
T Consensus 252 ~~~~~~~~~~~~~~~~~~------~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L----~~l--~~~ 319 (387)
T d1vefa1 252 VPLGVAVMREEVARSMPK------GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKL----RAI--PSP 319 (387)
T ss_dssp SSCEEEEEEHHHHHTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----HTS--CCT
T ss_pred ccccccccceeeeecccc------CCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHH----Hhc--CCC
Confidence 699999999999998754 35899999999999999999999998888999988888887754 222 457
Q ss_pred CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 776 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 776 ~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.|.+|||.|+|+++++.++. ...+.+.++++|+++.+. ++.+|++||+++|++|||+++++++++|
T Consensus 320 ~v~~vrg~Gl~~~ie~~~~~---------~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 320 KIREVRGMGLMVGLELKEKA---------APYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp TEEEEEEETTEEEEEESSCS---------HHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEeecceEEEEEEeCCc---------hHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 89999999999999997653 456778889999988765 4899999999999999999999999987
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=2.9e-66 Score=586.23 Aligned_cols=397 Identities=20% Similarity=0.273 Sum_probs=309.8
Q ss_pred hhhhhcccccccCCCCCCCCCCCeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhc
Q 002941 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (863)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~ 432 (863)
+.+.+.++.+|+|.. .|++|++ |+|.|+||.||+ +|||+++|+|++++|| +||+|++|+++|++++
T Consensus 6 ~~~~~~~~~~~~y~p-------~P~~i~~--a~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~ 71 (404)
T d1z7da1 6 YINNELKYGAHNYDP-------IPVVLKR--AKGVFVYDVNDK----RYYDFLSAYSSVNQGH-CHPNILNAMINQAKNL 71 (404)
T ss_dssp HHHHHHHHBCCCCCC-------EEEEEEE--EEBTEEEETTCC----EEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCC-------CCceEEE--eecCEEEECCCC----EEEEccccHHHHhhhc-CcHHHHHHHHHHHHhC
Confidence 445555678887753 3677776 788999999999 9999999999999999 8999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEe
Q 002941 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (863)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~ 512 (863)
.+.+. .+.+.+...+++.+.++.+ .++++|++|||+|+++|+|+| |.++..+.. + ...+.+|+.+
T Consensus 72 ~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sgs~a~~~a~k~a-r~~~~~~~~--~--------~~~~~~~~~~ 136 (404)
T d1z7da1 72 TICSR-AFFSVPLGICERYLTNLLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKK--I--------PENMAKIVVC 136 (404)
T ss_dssp SCCCT-TSEEHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSC--C--------CTTCCEEEEE
T ss_pred CCccc-ccchHHHHHHHHhhhhccc---cceeeeeccccchHHHHHHHH-HHHHhhccc--c--------cccccccccc
Confidence 87642 3455666666666666655 479999999999999999999 556543321 1 1124789999
Q ss_pred cCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccC
Q 002941 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (863)
Q Consensus 513 ~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d 592 (863)
.++|||.+.++++.++...++... ++. . ..+.+++.+ +
T Consensus 137 ~~~~hg~~~~~~~~~~~~~~~~~~--------~~~--~------~~~~~~~~~--------------------------~ 174 (404)
T d1z7da1 137 KNNFSGRTLGCISASTTKKCTSNF--------GPF--A------PQFSKVPYD--------------------------D 174 (404)
T ss_dssp TTC------------------------------------------CEEEECTT--------------------------C
T ss_pred cccCCCCcccccccccccccccCC--------CCC--C------ccccccccc--------------------------h
Confidence 999999999999988766554210 110 0 111222211 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc
Q 002941 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (863)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~ 672 (863)
.+.++..+ ++++|||||+||| ||++|+++||++||++|+++|++||++||+|||+|||||||.+
T Consensus 175 --------~~~l~~~~-------~~~~iAavi~EPi-~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~ 238 (404)
T d1z7da1 175 --------LEALEEEL-------KDPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 238 (404)
T ss_dssp --------HHHHHHHH-------TSTTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred --------HHHHHHHh-------cCCCEEEEEEEEE-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccc
Confidence 12344444 3578999999998 9999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhH
Q 002941 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (863)
Q Consensus 673 ~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l 752 (863)
|+++++|+.|||+|+||+|+||++|+|++++++++++.+.. ..|++||+|||++||||+++|++++++++.+++
T Consensus 239 ~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~ 312 (404)
T d1z7da1 239 LCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVLINEKLCENA 312 (404)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT------TCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCC------CCcCcCCCCCcchhhhhhhhhhhhhcchhhhhh
Confidence 99999999999999999999999999999999999998765 258999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecC
Q 002941 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCG 831 (863)
Q Consensus 753 ~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~pp 831 (863)
.+.++++.+ .+.+.+++++.|.+|||.|+|++++|.++.. ....+...|+++||++.+.+ +.+||.||
T Consensus 313 ~~~~~~~~~----~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-------~~~~~~~~l~~~Gl~~~~~~~~~ir~~Pp 381 (404)
T d1z7da1 313 EKLGGPFLE----NLKRELKDSKIVRDVRGKGLLCAIEFKNELV-------NVLDICLKLKENGLITRDVHDKTIRLTPP 381 (404)
T ss_dssp HHHHHHHHH----HHHHHHTTCTTEEEEEEETTEEEEEECTTTC-------CHHHHHHHHHHTTEECCEETTTEEEECCC
T ss_pred ccchhHHHH----HHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-------cHHHHHHHHHhCCeEEecCCCCEEEEECC
Confidence 777777766 4466778999999999999999999987541 24568889999999998865 89999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l~~l 853 (863)
+++|+++||+++++|+++++++
T Consensus 382 l~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 382 LCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999876
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2e-66 Score=596.72 Aligned_cols=404 Identities=17% Similarity=0.142 Sum_probs=308.6
Q ss_pred cccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCC----CChHHHHHHHHHHhhcCC
Q 002941 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN----VYEPALECAELLLQGVGK 458 (863)
Q Consensus 383 ~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~----~~~~~~eLae~L~~~~p~ 458 (863)
+|+|+|+||.||+ +|||+.+|+|++++|| +||+|++|+.+|+++..+.+...+ ....+.+|+++|.+..+.
T Consensus 41 ~g~G~~l~D~dG~----~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~ 115 (461)
T d1ohwa_ 41 ESRGNYLVDVDGN----RMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPK 115 (461)
T ss_dssp TCBBTEEEBTTSC----EEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCT
T ss_pred EeecCEEEECCCC----EEEEcccCHHHHhhcC-CcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhcc
Confidence 4899999999999 9999999999999999 899999999999988765432222 234567888888888776
Q ss_pred CCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC--------CccccccccEEEEecCCCccCccccceecCCC
Q 002941 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK--------DTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (863)
Q Consensus 459 ~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~--------~~~~~~~r~~II~~~~sYHG~t~gals~t~~~ 530 (863)
+ +++|+|+||||||||+|||+| |.|+..++.......+ .+.....+.+||+|++||||+|.+++++|+.+
T Consensus 116 ~-~~~v~f~~sGseAve~Aik~A-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~ 193 (461)
T d1ohwa_ 116 G-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 193 (461)
T ss_dssp T-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSC
T ss_pred C-cceeeeecchhhhhHHHHHHH-HHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCc
Confidence 5 789999999999999999999 6676554321000000 00001124789999999999999999999876
Q ss_pred CCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhc
Q 002941 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (863)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (863)
.++..+. +..+.+... ..+.++|... +...+ ......+.+.+++.+..
T Consensus 194 ~~~~~~~--------~~~~~~~~~----~~~~~~~~~~------------------~~~~~--~~~~~~~~~~l~~~~~~ 241 (461)
T d1ohwa_ 194 AIHKIDI--------PSFDWPIAP----FPRLKYPLEE------------------FVKEN--QQEEARCLEEVEDLIVK 241 (461)
T ss_dssp HHHHTTC--------CCCCCCEEC----CCCCCSSGGG------------------CHHHH--HHHHHHHHHHHHHHHHH
T ss_pred ccccccc--------cccCCcccc----cccccccccc------------------ccccc--chhhhhhHHHHHHHHHH
Confidence 5543211 111111100 0001111110 00000 11112233455555432
Q ss_pred CCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC--CcEEEec
Q 002941 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV--PDIACYG 688 (863)
Q Consensus 611 ~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~--PDivt~s 688 (863)
. ..++++|||||+||| ||++|++++|++||++|+++|++||++||+|||+|||||||++|+++++|+. |||+|+|
T Consensus 242 ~--~~~~~~iAavivEPi-~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g 318 (461)
T d1ohwa_ 242 Y--RKKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS 318 (461)
T ss_dssp H--HHTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC
T ss_pred H--HhCCCccceeeeccc-cccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhh
Confidence 1 235789999999998 9999999999999999999999999999999999999999999999999984 9999999
Q ss_pred cccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHH
Q 002941 689 KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (863)
Q Consensus 689 KgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~ 768 (863)
|+|+||+.|.++++... ....|++||++||++||+|+|+|++++++++.+++.+.++++.+ .+.
T Consensus 319 K~l~~g~~~~~~~~~~~------------~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~----~l~ 382 (461)
T d1ohwa_ 319 KKMMTGGFFHKEEFRPN------------APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT----GLL 382 (461)
T ss_dssp GGGSSEEEEECGGGSCS------------STTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HHH
T ss_pred hcccccccccccccccc------------cccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHH----HHH
Confidence 99999865544333211 12468899999999999999999999888888888887877776 446
Q ss_pred HHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHH
Q 002941 769 QQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKL 846 (863)
Q Consensus 769 ~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L 846 (863)
++..++| .|++|||.|+|++|++.++. .+.++...|+++||++.+.+ ++|||.||+++|++|||+++++|
T Consensus 383 ~l~~~~~~~i~~vrG~Gl~~~ie~~~~~--------~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l 454 (461)
T d1ohwa_ 383 DLQARYPQFISRVRGRGTFCSFDTPDES--------IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIF 454 (461)
T ss_dssp HHHHHCTTTCEEEEEETTEEEEECSSHH--------HHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHH
T ss_pred HHHhhCCCceEEeeeeeEEEEEEcCCHH--------HHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHH
Confidence 6677886 68999999999999997543 67789999999999999865 89999999999999999999999
Q ss_pred HHHHHH
Q 002941 847 YQRLEE 852 (863)
Q Consensus 847 ~~~l~~ 852 (863)
+++|++
T Consensus 455 ~~~l~e 460 (461)
T d1ohwa_ 455 SDILAD 460 (461)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=5.8e-65 Score=579.45 Aligned_cols=389 Identities=17% Similarity=0.216 Sum_probs=315.5
Q ss_pred CeEEEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHh
Q 002941 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (863)
Q Consensus 375 ~~~~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (863)
.|.+|++ |+|+|+||.||+ +|||+.+++|++++|| +||+|++|+++|++++.+.. ..+....++++++.+
T Consensus 34 ~P~~i~~--a~G~~l~D~~G~----~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~~~~~---~~~~~~~~la~~~~~ 103 (427)
T d2gsaa_ 34 QPIVFDR--VKDAYAWDVDGN----RYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTSFG---APCALENVLAEMVND 103 (427)
T ss_dssp CCCCEEE--EEBTEEEETTSC----EEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTCSCCS---SCCHHHHHHHHHHHH
T ss_pred CCcEEEE--eecCEEEECCCC----EEEEechhHHHHhccC-CcHHHHHHHHHHHHhcCccc---cchhHHHHHHHHHHh
Confidence 3667877 788999999999 9999999999999999 89999999999999976643 457788899999999
Q ss_pred hcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCC
Q 002941 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (863)
Q Consensus 455 ~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~ 534 (863)
..|. .++|+|++|||||||+|+|+| |.| +|| ++||+|+++|||+|.+++++++...++.
T Consensus 104 ~~~~--~~~v~f~~sGseA~e~Alk~a-r~~-------t~r-----------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 162 (427)
T d2gsaa_ 104 AVPS--IEMVRFVNSGTEACMAVLRLM-RAY-------TGR-----------DKIIKFEGCYHGHADMFLVKAGSGVATL 162 (427)
T ss_dssp HSTT--CSEEEEESSHHHHHHHHHHHH-HHH-------HCC-----------CEEEEETTCCCCSCGGGCSSCCHHHHHT
T ss_pred hCCc--cccccccCCcHHHHHHHHHHH-HHh-------cCC-----------CeEEEEecccccCcceeeeecCCccccc
Confidence 8874 589999999999999999999 667 454 7899999999999999999987433221
Q ss_pred CCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 002941 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (863)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~ 614 (863)
.+ + ..|.+ .....++.. .+ ..+| .+.+|+.++
T Consensus 163 ~~--p---------~~~~~------~~~~~~~~~----------~~--------~~~~--------~~~le~~~~----- 194 (427)
T d2gsaa_ 163 GL--P---------SSPGV------PKKTTANTL----------TT--------PYND--------LEAVKALFA----- 194 (427)
T ss_dssp TC--C---------SCSSS------CHHHHTTEE----------EE--------CTTC--------HHHHHHHHT-----
T ss_pred CC--C---------CCCCC------cccCcccee----------cc--------Ccch--------HHHHHHHHH-----
Confidence 00 0 00110 000001000 00 0122 356777775
Q ss_pred CCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCC
Q 002941 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (863)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG 694 (863)
++++++||||+||| ||++|+++||++||+.|+++|++||++||+|||+||| |+|++|+++++|+.|||+|+||+++||
T Consensus 195 ~~~~~iaavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG 272 (427)
T d2gsaa_ 195 ENPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG 272 (427)
T ss_dssp TSTTTEEEEEECSS-BCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGTT
T ss_pred hCCCCeEEEEEcCC-cCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCCC
Confidence 36789999999998 9999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+|+|++++++++++.+.... .+.|++||++||++||||+++|++++++++.+++.++++++++.+ .++.+++
T Consensus 273 -~p~~a~~~~~~i~~~~~~~~---~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L----~~l~~~~ 344 (427)
T d2gsaa_ 273 -LPVGAYGGKREIMQLVAPAG---PMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGL----LAIAQET 344 (427)
T ss_dssp -SCCEEEEECHHHHTTBTTTS---SBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred -cceeeeeehHHHHHHhcccC---CCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHH----HHHHhhc
Confidence 79999999999999887532 357899999999999999999999999888888888888888754 5667788
Q ss_pred CCeeEecccceEEEEEEccCCcC-----CCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+....+.+.|.|+++.+...... ..........+.+.|+++||++.|.+.... .||+++|++|||+++++|+++
T Consensus 345 ~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~~~-~~~l~~Te~dId~~l~al~~a 423 (427)
T d2gsaa_ 345 GHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAG-FTSLAHTEEDIDATLAAARTV 423 (427)
T ss_dssp TCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCE-ECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCcce-eCCCCCCHHHHHHHHHHHHHH
Confidence 87677788888999988654311 111233456788999999999998764333 478999999999999999999
Q ss_pred HHHH
Q 002941 850 LEEF 853 (863)
Q Consensus 850 l~~l 853 (863)
++++
T Consensus 424 l~~L 427 (427)
T d2gsaa_ 424 MSAL 427 (427)
T ss_dssp HTCC
T ss_pred HHhC
Confidence 8753
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-33 Score=315.56 Aligned_cols=350 Identities=14% Similarity=0.119 Sum_probs=259.0
Q ss_pred EEEeecccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCC----CCChHHHHHHHHHH
Q 002941 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE----NVYEPALECAELLL 453 (863)
Q Consensus 378 ~i~~~~G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~----~~~~~~~eLae~L~ 453 (863)
+|++ ++|.+++|.||+ +||||+| |++||+++||+|++|+.+++++++...... ...+.+.+|+++|+
T Consensus 30 ~i~~--~~g~~v~~~dG~----~~l~f~s---~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA 100 (401)
T d1fc4a_ 30 IITS--AQQADITVADGS----HVINFCA---NNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CBCS--CSSSEEEBTTSC----EEEECCC---SCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred eccC--CCCCeEEecCCC----EEEEEEc---cccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHH
Confidence 4444 688999999999 9999987 789999789999999999999988654211 24688899999999
Q ss_pred hhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCC
Q 002941 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (863)
Q Consensus 454 ~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~ 533 (863)
++++ .+.++++|||++||..+++.. .++ .++|..+...|.++..++..+.....
T Consensus 101 ~~~g---~e~al~~~SG~~An~~~i~~l-----------~~~-----------~d~i~~d~~~h~s~~~G~~~~~a~~~- 154 (401)
T d1fc4a_ 101 AFLG---MEDAILYSSCFDANGGLFETL-----------LGA-----------EDAIISDALNHASIIDGVRLCKAKRY- 154 (401)
T ss_dssp HHHT---CSEEEEESCHHHHHHTTHHHH-----------CCT-----------TCEEEEETTCCHHHHHHHHTSCSEEE-
T ss_pred Hhhc---CCceEEecchhhhhHHHHHHh-----------cCC-----------CcEEEeCCcchHHHHccccccCceEE-
Confidence 9998 478999999999999999865 232 45666666677766554443221100
Q ss_pred CCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 002941 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (863)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~ 613 (863)
.++ .+|..+ .+.+.+.+..
T Consensus 155 -----------------------------~~~------------------------~~d~~~-----le~~~~~~~~--- 173 (401)
T d1fc4a_ 155 -----------------------------RYA------------------------NNDMQE-----LEARLKEARE--- 173 (401)
T ss_dssp -----------------------------EEC------------------------TTCHHH-----HHHHHHHHHH---
T ss_pred -----------------------------EEc------------------------CCChHH-----HHHHHHHhhh---
Confidence 000 011111 1222223321
Q ss_pred CCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCC--CcEE--Ee
Q 002941 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA--CY 687 (863)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~--PDiv--t~ 687 (863)
.+.....|++|+| +++.|.+.| |+++++||++||++||+||+|+ +|+.|. .+..+++++. +|++ |+
T Consensus 174 --~~~~~~liv~egv-~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~-~g~~g~~G~G~~~~~~~~~~~dii~~tl 245 (401)
T d1fc4a_ 174 --AGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHA-VGFVGENGRGSHEYCDVMGRVDIITGTL 245 (401)
T ss_dssp --TTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTT-TTTSSTTSCCHHHHTTCTTCCSEEEEES
T ss_pred --cccCceEEEEcCC-CCCCCchhh----hhHHHHHHhhcCcEEEehhhhc-cccccCCCCccchhccCCCCCeEEEeec
Confidence 3456678999998 999998887 9999999999999999999995 667776 4567788874 5665 89
Q ss_pred ccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHHHHHHHH
Q 002941 688 GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILRELWDLE 766 (863)
Q Consensus 688 sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~~~l~~~ 766 (863)
+|+++| .+.|++++++++++.+....+ .+.++.+.+|..+++++++++.+. .++++++++++.+++++.+...
T Consensus 246 ~Ka~gg--~~Gg~v~g~~~~~~~l~~~~~----~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~ 319 (401)
T d1fc4a_ 246 GKALGG--ASGGYTAARKEVVEWLRQRSR----PYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp SSTTCS--SSCEEEEECHHHHHHHHHHCH----HHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccc--CCcccccCCHHHHHHHHcCCh----hhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhccc
Confidence 999964 568889999999999875321 355677888999999999999875 4667788888888887644221
Q ss_pred HHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHH
Q 002941 767 LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEV 838 (863)
Q Consensus 767 l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~ee 838 (863)
..+. ....+.++.+.+.+.. .+..+++.|+++||++.+. + .++|++++..+|+||
T Consensus 320 ------g~~~---~~~~~pIv~v~~~~~~--------~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~ed 382 (401)
T d1fc4a_ 320 ------GFTL---AGADHAIIPVMLGDAV--------VAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQ 382 (401)
T ss_dssp ------TCCB---CCSSSSEEEEEEECHH--------HHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred ------CCcc---CCCCCCEEEEEECCHH--------HHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHH
Confidence 1111 1224467777776542 5778999999999998742 2 569999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 839 CSQLLLKLYQRLEEFD 854 (863)
Q Consensus 839 id~~v~~L~~~l~~l~ 854 (863)
||+++++|+++.+++.
T Consensus 383 Id~~v~al~ev~~~lg 398 (401)
T d1fc4a_ 383 ITRAVEAFTRIGKQLG 398 (401)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999988753
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=4.7e-29 Score=278.43 Aligned_cols=336 Identities=15% Similarity=0.106 Sum_probs=251.8
Q ss_pred ccceEEEEcCCCcccceEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCC
Q 002941 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (863)
Q Consensus 384 G~G~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~ 459 (863)
++|.++. .||+ +|+||+| |++||.+.||+|++|+.+++++++... ...+.++.+.+|+++|+++++
T Consensus 28 ~~g~~i~-~~g~----~~l~f~s---~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g-- 97 (383)
T d1bs0a_ 28 GAGRWLV-ADDR----QYLNFSS---NDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG-- 97 (383)
T ss_dssp CSSSEEE-ETTE----EEEECSC---CCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--
T ss_pred CCCCeEE-ECCe----EEEEEEc---ccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC--
Confidence 6778886 7888 9999998 899998789999999999999987643 223567999999999999998
Q ss_pred CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCC
Q 002941 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (863)
Q Consensus 460 ~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~ 539 (863)
.+.+++++||+.||..++... .++ ..+|..+...|.+...+...++...
T Consensus 98 -~e~al~~~SG~~an~~~i~al-----------~~~-----------~d~v~~d~~~h~si~~g~~~~~~~~-------- 146 (383)
T d1bs0a_ 98 -YSRALLFISGFAANQAVIAAM-----------MAK-----------EDRIAADRLSHASLLEAASLSPSQL-------- 146 (383)
T ss_dssp -CSEEEEESCHHHHHHHHHHHH-----------CCT-----------TCEEEEETTCCHHHHHHHHTSSSEE--------
T ss_pred -CCceEEecccchhhHHHHHhh-----------cCC-----------CceEEeeccccHHHhhccccCCCcc--------
Confidence 478999999999999999765 232 5688888889998776654432110
Q ss_pred cccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 002941 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (863)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~ 619 (863)
..++ .+| .+++++.+.. .+.+
T Consensus 147 ----------------------~~~~------------------------hnd--------~~~le~~l~~-----~~~~ 167 (383)
T d1bs0a_ 147 ----------------------RRFA------------------------HND--------VTHLARLLAS-----PCPG 167 (383)
T ss_dssp ----------------------EEEC------------------------TTC--------HHHHHHHHHS-----CCSS
T ss_pred ----------------------eEec------------------------chH--------HHHHHHHhcc-----cCCC
Confidence 0111 022 2456666653 3345
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCCCcEE--EeccccCCCC
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDIA--CYGKLLTGGV 695 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~PDiv--t~sKgLggG~ 695 (863)
...|++|++ .++.|.+.| +++|.++|++||++||+||+| ++|-.|. .+.++++++.+|++ ++||+++
T Consensus 168 ~~~vv~e~v-~s~~G~i~p----l~~l~~l~~~~~~~livDeah-~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g--- 238 (383)
T d1bs0a_ 168 QQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAH-GTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG--- 238 (383)
T ss_dssp CEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTT-TTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS---
T ss_pred ceEEEecCC-CCCCCcccc----hhHHHHHHHhcCcEEEeecce-eeeecCCcccchHHHcCCcccccccccccccc---
Confidence 568999998 999998888 999999999999999999999 5777776 34578999999977 4677766
Q ss_pred CCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 696 ~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
.+.|+++++.++++.+...+ ..+.+|...+|..+++++++++++++.+ ..++++++..++++ .+.
T Consensus 239 ~~Gg~v~~~~~~~~~l~~~~----~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~--------~l~ 306 (383)
T d1bs0a_ 239 VSGAAVLCSSTVADYLLQFA----RHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRA--------GVQ 306 (383)
T ss_dssp SCCEEEEECHHHHHHHHHHC----HHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH--------HHT
T ss_pred ccccccccchhHHHHHHhhc----hhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------HHH
Confidence 35678999999999987532 2466777889999999999999887643 23344444444433 233
Q ss_pred cCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHH
Q 002941 773 SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 773 ~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~ 844 (863)
+.+. .-+.+...++.|.+.++ ..+..+.+.|+++||++.+. | .++|++++..+|+||||++++
T Consensus 307 ~~g~-~~~~~~s~Ii~v~~g~~--------~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~ 377 (383)
T d1bs0a_ 307 DLPF-TLADSCSAIQPLIVGDN--------SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLE 377 (383)
T ss_dssp TSSC-EECSCCSSBCCEEEESH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHH
T ss_pred hcCC-ccCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 4443 12334556666766543 25778999999999999742 3 479999999999999999999
Q ss_pred HHHHH
Q 002941 845 KLYQR 849 (863)
Q Consensus 845 ~L~~~ 849 (863)
+|+.+
T Consensus 378 ~L~~~ 382 (383)
T d1bs0a_ 378 VLHGN 382 (383)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98763
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.94 E-value=9e-26 Score=251.80 Aligned_cols=328 Identities=12% Similarity=0.021 Sum_probs=242.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE 475 (863)
+++||+| |++||..+||+|++|+.+++++++... ...+.++.+.+|+++|+++++ .+.+++++||..||.
T Consensus 46 ~~~~FsS---ndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g---~e~all~~sG~~An~ 119 (396)
T d2bwna1 46 DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ---KEAALVFSSAYNAND 119 (396)
T ss_dssp EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT---CSEEEEESCHHHHHH
T ss_pred EEEEEEc---ccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC---CCceeeeecchHHHH
Confidence 8999998 999999999999999999999987653 223467899999999999998 478999999999999
Q ss_pred HHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccc
Q 002941 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (863)
Q Consensus 476 ~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (863)
.++..... .+ +..+|..+...|.+...++.+++....+
T Consensus 120 ~~i~~l~~---------~~-----------~~d~i~~D~~~Hasi~~g~~ls~a~~~~---------------------- 157 (396)
T d2bwna1 120 ATLSTLRV---------LF-----------PGLIIYSDSLNHASMIEGIKRNAGPKRI---------------------- 157 (396)
T ss_dssp HHHHHHHH---------HS-----------TTCEEEEETTCCHHHHHHHHHSCCCEEE----------------------
T ss_pred HHHHHHhc---------cc-----------CCCceeehhhhhhccchhhhccccCceE----------------------
Confidence 99986511 12 2579999999999887777665422100
Q ss_pred cCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 002941 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (863)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~ 635 (863)
|+| +| .+++++.++. ..+.....|++|.| .++.|.
T Consensus 158 ------------f~H--------------------nd--------~~~l~~l~~~----~~~~~~~~iv~egv-ySmdGd 192 (396)
T d2bwna1 158 ------------FRH--------------------ND--------VAHLRELIAA----DDPAAPKLIAFESV-YSMDGD 192 (396)
T ss_dssp ------------ECT--------------------TC--------HHHHHHHHHH----SCTTSCEEEEEESB-CTTTCC
T ss_pred ------------eec--------------------ch--------HHHhhhHHhh----hcccCceeEEEEee-ccCccc
Confidence 000 22 1233444432 22344457889998 999999
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEecccccccccCC--cchhhhcCCC--CcEE--EeccccCCCCCCceeeeccHHHHH
Q 002941 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 636 ~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~--~~a~e~~gv~--PDiv--t~sKgLggG~~Pigav~~~~~i~~ 709 (863)
+.| |++|.+||++||+.|++||+| |||-.|+ .+..+++|+. .|++ ||||++|+. .|++++++++.+
T Consensus 193 ~ap----l~~l~~L~~~y~~~L~vDeAH-s~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~---Gg~v~~~~~~i~ 264 (396)
T d2bwna1 193 FGP----IKEICDIAEEFGALTYIDEVH-AVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF---GGYIAASARMVD 264 (396)
T ss_dssp BCC----HHHHHHHHHHHTCEEEEECTT-TTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC---CEEEEECHHHHH
T ss_pred ccc----cHhHHHHhhhhcceeeeccce-eeeeeccccccchhhcCCceeeeeeeeccccccccc---ccccchhHHHHH
Confidence 998 999999999999999999999 7998887 4556778874 4665 899999732 346899999999
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~ 786 (863)
.+...++ .+.+|.+.+|..+++++++++++..++ ++..++.+.++++..+.. . ..+.. .....+
T Consensus 265 ~l~~~~~----~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~----~--g~~~~---~~~spI 331 (396)
T d2bwna1 265 AVRSYAP----GFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA----L--GMPII---DHGSHI 331 (396)
T ss_dssp HHHHHCH----HHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH----H--TCCBC---CCSSSC
T ss_pred HHHhhcc----hhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh----c--CCCcC---CCCCCE
Confidence 9985332 355666778999999999999986543 244555666666654322 1 22221 123456
Q ss_pred EEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------C-CEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 787 CAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 787 ~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g-~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.|.+.++. .+..+++.|+ ++||++.+. | .++|++++..+|+||||+++++|++.
T Consensus 332 vpv~ig~~~--------~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 332 VPVVIGDPV--------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp EEEECCCHH--------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--------HHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 777775432 5677888866 689998642 2 68999999999999999999999874
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.87 E-value=1.1e-21 Score=223.18 Aligned_cols=365 Identities=12% Similarity=-0.001 Sum_probs=212.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.++|+.+..|+...++ .+ .++ +.. +...+ ..++...+|++++++++| .++++|++||++||+.|+|
T Consensus 43 ~~id~~sd~~t~~~~~-~~---~a~----~~~-gd~~y--~~~~~~~~le~~~a~l~g---~~~~~~~~sGt~A~~~a~~ 108 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSD-HQ---WAA----MIT-GDEAY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 108 (465)
T ss_dssp CSEECSCSSSCCCEEH-HH---HHH----HHT-CCCCS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccccchhhhhH-HH---HHH----Hhh-hhhhh--ccChHHHHHHHHHHHHHC---CCEEEECCCcHHHHHHHHH
Confidence 7899999888876654 11 112 222 11111 135566799999999998 5799999999999999999
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
++ +.++...|.. + ..+|. ..||+.+.++....+...... ...+..
T Consensus 109 ~~-~~~g~~~~~~-~------------~~~i~--~~~h~~t~~~~~~~~g~~~~~-------------~~~~~~------ 153 (465)
T d1ax4a_ 109 VL-LKYKQKEGKA-K------------NPVFI--SNFHFDTTAAHVELNGCKAIN-------------IVTEKA------ 153 (465)
T ss_dssp HH-HHHHHHTTCC-S------------SCEEE--ESSCCHHHHHHHHHTTCEEEE-------------CBCGGG------
T ss_pred HH-HHHHHhcCCC-C------------CeEEe--ccchhhhhHHHHHHcCCeeec-------------cccccc------
Confidence 99 4566555532 1 22332 467877766543322110000 000000
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
. .+.+. ..+....| .+.+++.++. ..++.++++++||+ ++.+|..+++
T Consensus 154 ~-~~~~~------------------~~~~~~~d--------~~~l~~~i~~----~~~~~~~~~~~~~~-~~~~g~~~~~ 201 (465)
T d1ax4a_ 154 F-DSETY------------------DDWKGDFD--------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPVS 201 (465)
T ss_dssp G-CTTSC------------------CTTTTCBC--------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCCC
T ss_pred C-CCCCC------------------CCccCccC--------HHHHHHHHHh----hccccccceeeccc-cccCceecCC
Confidence 0 00000 00000112 2456666653 34568999999997 9999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccc------cccccCCcchhhhcCCC------CcEEEeccccCCCCCCceeee-ccHH
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFT------GFWRLGVETTADLLGCV------PDIACYGKLLTGGVIPLAATL-ATNA 706 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~T------GfGRtG~~~a~e~~gv~------PDivt~sKgLggG~~Pigav~-~~~~ 706 (863)
.+++++|+++|++||++||+||+++ +++|++.+++.+..++. .|+++++|.-+++ .|.++++ ++++
T Consensus 202 ~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~-~~~~g~l~~~~~ 280 (465)
T d1ax4a_ 202 MSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL-LNIGGLVAIRDN 280 (465)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC-CSSCEEEEESSC
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcc-cccceeEeecch
Confidence 9999999999999999999999987 45566666665554443 5788998887776 4555544 4432
Q ss_pred --HHHhhhcCCccceeecccCCCccHHHHHHH-HHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 707 --VFDSFVGDSKLKALLHGHSYSAHALGCAAA-AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 707 --i~~~l~~~~~~~~~~~~~T~~~~pla~AAa-lAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
+++..... .....+..++.+....+.++ ...+.....+++.++..++.+++.+.| .+. ..+.+...++.
T Consensus 281 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L----~~~--g~~~v~~~~~~ 352 (465)
T d1ax4a_ 281 EEIFTLARQR--CVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL----REA--GIPIQYPTGGH 352 (465)
T ss_dssp HHHHHHHHHH--HHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----HHT--TCCBCSSCCSS
T ss_pred HHHHHhhhcc--ccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHH----Hhh--cCccccCCCcc
Confidence 22221110 00112334444443333333 333443344555566666666666543 221 34555555555
Q ss_pred ceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEe------------------cCCEEEEe-cCCCCcHHHHHHHH
Q 002941 784 GTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRP------------------LGNVIYLM-CGPCSSPEVCSQLL 843 (863)
Q Consensus 784 Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p------------------~g~~lr~~-ppl~~t~eeid~~v 843 (863)
+.++.++...+. ....+ .........+.+.||.+.. ..+.+||. |+.++|+||+|.++
T Consensus 353 ~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv 430 (465)
T d1ax4a_ 353 AVFVDCKKLVPQIPGDQF--PAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIA 430 (465)
T ss_dssp EEEEESTTTCTTSCGGGC--HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHH
T ss_pred eeeeehhhhcCCCccccc--hhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHH
Confidence 555443322111 11111 1233345556678886542 12578996 55678999999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDKV 856 (863)
Q Consensus 844 ~~L~~~l~~l~~~ 856 (863)
++|++++++.+++
T Consensus 431 ~~l~~v~~~~~~i 443 (465)
T d1ax4a_ 431 DALIGLKEKFATL 443 (465)
T ss_dssp HHHHTTHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999988766543
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.9e-20 Score=190.14 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=162.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcccccCCCCCC------chhHHHhhccccccccCCCcccc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDS------DSRFLFTKLPSLSLRRNFPSSLI 111 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 111 (863)
|.+||+||+||||||++|++|+++|. ++|++|.++||+.+|..... +...+... ...
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa-----~~G~rVl~id~d~~g~~~~~~~~~~~~~~~~~~~-~~~----------- 64 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRN-SSL----------- 64 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHT-CSS-----------
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHH-----HCCCeEEEECccccCCCCCCCCcchhHHHHHHHh-hcc-----------
Confidence 57999999999999999999999999 99999999999988754321 11111111 111
Q ss_pred ccchhhhhhhHHhhhcccCCCCCCCccccccccccccccccccccCCCCCcccccccccceeeCCCCChHHHHhhhcCCC
Q 002941 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV 191 (863)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~~~~~~~~ 191 (863)
........++....+..+......+ ...
T Consensus 65 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (224)
T d1byia_ 65 ---------------------------------------------------QLDYATVNPYTFAEPTSPHIISAQE-GRP 92 (224)
T ss_dssp ---------------------------------------------------CCCHHHHCSEEESSCSCHHHHHHHH-TCC
T ss_pred ---------------------------------------------------Ccccccccccccccchhhhhhhhhh-hhh
Confidence 0111234567777777888877777 788
Q ss_pred CChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHH
Q 002941 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (863)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (863)
.....+.+.+......+ |++++++..++..+......+.++++....++++|+....+.+.++..++
T Consensus 93 ~~~~~~~~~~~~~~~~~-------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~~~ 159 (224)
T d1byia_ 93 IESLVMSAGLRALEQQA-------------DWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp CCHHHHHHHHHHHHTTC-------------SEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhcc-------------ceEeecccccccccccccchhhcccccccceeeEEEeeccchhHHHHHHH
Confidence 89999999999888776 99999999999988878888999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEcCCCCC--C----HHHHHHhhcCCCCeee-cCCCCCCCch-hhhhhhhh
Q 002941 272 ESLKLRGYDVVAVVFEDHGLV--N----EVPLMSYLRNRVPVLV-LPPLPQDSSN-DLMEWFDE 327 (863)
Q Consensus 272 ~~~~~~~~~v~gvi~n~~~~~--~----~~~~~~~~~~~~pvl~-~p~~~~~~~~-~~~~~l~~ 327 (863)
+.++..|..+.|+|+|++... . .+.+++. .++|||| ||+.++.... +..+|++.
T Consensus 160 ~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~--~gi~vlG~IP~~~~~~e~~~~~~~l~l 221 (224)
T d1byia_ 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRM--IPAPLLGEIPWLAENPENAATGKYINL 221 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHH--SSSCEEEEECCCTTCTTCCCCGGGCCG
T ss_pred HHHhccCCccEEEEEeCcCCCchHHHHHHHHHHHH--hCCCEEEECCCCCCCccccccccccCc
Confidence 999999999999999987432 2 2334444 4899999 9999987543 56666653
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=9.1e-20 Score=194.76 Aligned_cols=339 Identities=12% Similarity=0.011 Sum_probs=203.3
Q ss_pred EeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHH
Q 002941 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (863)
Q Consensus 402 lD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA 481 (863)
+|+.+-..+.+ +|++++|+.++.. +... -+..+...+|+++|++++| .++++|++||++||+.||+.+
T Consensus 2 ~~~~~~~~t~p-----~p~v~~A~~~a~~--g~~~--yg~~p~~~~le~~lA~~~G---~~~~~~~~sGt~A~~~al~a~ 69 (343)
T d1m6sa_ 2 IDLRSDTVTKP-----TEEMRKAMAQAEV--GDDV--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIMAH 69 (343)
T ss_dssp EECSCGGGCCC-----CHHHHHHHHTCCC--CCGG--GTCCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHH
T ss_pred cccccccCCCC-----CHHHHHHHHhhhc--CCcc--cCCCHHHHHHHHHHHHHHC---CCeEEEeCCHHHHHHHHHHHH
Confidence 56665444444 5999999976532 1111 1245788999999999998 468999999999999999877
Q ss_pred HHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceee
Q 002941 482 FRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561 (863)
Q Consensus 482 ~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 561 (863)
.+ .| ..++.....++..+.......... . ..
T Consensus 70 ~~---------~g------------~~~~~~~~~~~~~~~~~~~~~~~~--------------~--------------~~ 100 (343)
T d1m6sa_ 70 TQ---------RG------------DEVILEADSHIFWYEVGAMAVLSG--------------V--------------MP 100 (343)
T ss_dssp CC---------TT------------CEEEEETTCHHHHSSTTHHHHHTC--------------C--------------EE
T ss_pred hc---------cC------------Cceeccccccceeeeccccccccc--------------c--------------ee
Confidence 21 11 345555544433322221111100 0 00
Q ss_pred ecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHH
Q 002941 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (863)
Q Consensus 562 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~ 641 (863)
.+.|... ...+ .+.++..+... ..+...+..+++++. .+..|..+++.+
T Consensus 101 ~~~~~~~--------------------~~~~--------~~~~~~~i~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (343)
T d1m6sa_ 101 HPVPGKN--------------------GAMD--------PDDVRKAIRPR--NIHFPRTSLIAIENT-HNRSGGRVVPLE 149 (343)
T ss_dssp EEECEET--------------------TEEC--------HHHHHHHSCCS--CTTSCCEEEEEEESS-BTTTTSBCCCHH
T ss_pred ecccccc--------------------CccC--------HHHHHHhhhhh--hcccccccccccccc-cccCCceecCHH
Confidence 0111000 0011 12333444331 122345666777775 566677888999
Q ss_pred HHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceee
Q 002941 642 FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL 721 (863)
Q Consensus 642 fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~ 721 (863)
++++|+++|++||+++++||+++++...+..+.........+..+++|..+.|..+.++++...+.+....... ..
T Consensus 150 ~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~ 225 (343)
T d1m6sa_ 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKAR----KM 225 (343)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhhHhhC----cc
Confidence 99999999999999999999998776555444444443445666776666554467888888888776654311 11
Q ss_pred cccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCC
Q 002941 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 722 ~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~ 800 (863)
.+.++......+++...... +...+.....++..++.+.+ .+. +....... ...++.+.+....
T Consensus 226 ~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~v~~~~~~~~----- 290 (343)
T d1m6sa_ 226 LGGGMRQAGVLAAAGIIALT--KMVDRLKEDHENARFLALKL----KEI----GYSVNPEDVKTNMVILRTDNLK----- 290 (343)
T ss_dssp HTCCCSSTHHHHHHHHHHHH--HSSTTHHHHHHHHHHHHHHH----HHH----TCBCCGGGCCSSEEEEECTTSS-----
T ss_pred cccccchhHHHHHhhhhhhh--hhHHHHHHHHHHHHHhhhHH----HHh----ccCccCCCCCceEEEEEeCCCc-----
Confidence 23333333333333333222 22233334444444443322 221 11111122 2346666665432
Q ss_pred chHHHHHHHHHHHHCCcEEEecC-CEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..+.++.+.|+++||++++.+ +.+|+++++.+|+||||+++++|+++++++
T Consensus 291 --~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 --VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp --SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 125679999999999999865 899999999999999999999999999876
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=4.1e-19 Score=189.14 Aligned_cols=333 Identities=9% Similarity=0.012 Sum_probs=194.3
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.+|||.| .++.| .||+|++|+.++... +.. ..+.++...++.++|+++++.+ ..++|++||+|||+.|++
T Consensus 3 ~~~~f~s---~n~~g--~~P~v~~A~~~a~~~--~~~-~~~~~~~~~~l~~~la~~~g~~--~~v~f~~sGt~An~~a~~ 72 (345)
T d1v72a1 3 PALGFSS---DNIAG--ASPEVAQALVKHSSG--QAG-PYGTDELTAQVKRKFCEIFERD--VEVFLVPTGTAANALCLS 72 (345)
T ss_dssp CCCBCSC---GGGCC--CCHHHHHHHHHTTSS--CCC-STTCSHHHHHHHHHHHHHHTSC--CEEEEESCHHHHHHHHHH
T ss_pred CCcCcCC---CCCCC--CCHHHHHHHHHHhcc--Ccc-ccCCCHHHHHHHHHHHHHHCCC--cEEEECCchHHHHHHHHH
Confidence 5788886 44555 589999999886542 221 1235678889999999999853 478999999999999999
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceec--CCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
.++ .. + ..++.. ...|.......... ....+
T Consensus 73 ~~~-~~--------~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------- 105 (345)
T d1v72a1 73 AMT-PP--------W------------GNIYCH-PASHINNDECGAPEFFSNGAK------------------------- 105 (345)
T ss_dssp TSC-CT--------T------------EEEEEC-TTSHHHHSSTTHHHHHTTSCE-------------------------
T ss_pred HHH-hc--------C------------Cccccc-cccceeeechhhHHHhcCccc-------------------------
Confidence 873 11 1 222222 22222221111110 00000
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
..+ .+... ...+ .+.+++.+... ........+++++++ ++..+...
T Consensus 106 --~~~-~~~~~--------------------~~~~--------~~~l~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~ 151 (345)
T d1v72a1 106 --LMT-VDGPA--------------------AKLD--------IVRLRERTREK--VGDVHTTQPACVSIT-QATEVGSI 151 (345)
T ss_dssp --EEE-CCCGG--------------------GCCC--------HHHHHHHTTSS--TTCTTSCEEEEEEEE-SSCTTSCC
T ss_pred --ccc-ccccc--------------------cccc--------HHHhhhhhccc--ccccccccceeeeee-cccccccc
Confidence 000 00000 0011 13344444431 111234556666765 56666677
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC--CCcEEEeccccCCCCCCceeeec-cHHHHHhhhcC
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIACYGKLLTGGVIPLAATLA-TNAVFDSFVGD 714 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PDivt~sKgLggG~~Pigav~~-~~~i~~~l~~~ 714 (863)
.+.+.++++.++|++||+++++||+++++++.+..+....... .++.++++|..+++ ...+.... ...........
T Consensus 152 ~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 230 (345)
T d1v72a1 152 YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV-LAAEAIVLFNTSLATEMSYR 230 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC-SSCEEEEESSGGGHHHHHHH
T ss_pred ccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccc-ccccccccchhhhhhhcccc
Confidence 7889999999999999999999999998877766655555444 45567888877766 34444443 33333322210
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEcc
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQA 793 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~ 793 (863)
........+...+++.+++..+.+..+. +......++.. .+.+.+.+.+.+..... .+.++.+.+.
T Consensus 231 -------~~~~~~~~~~~~~aa~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~l~~~~g~~~~~p~~~niv~~~~~- 297 (345)
T d1v72a1 231 -------RKRAGHLSSKMRFLSAQIDAYLTDDLWL-RNARKANAAAQ----RLAQGLEGLGGVEVLGGTEANILFCRLD- 297 (345)
T ss_dssp -------HHHTTCCCSSTHHHHHHHHHHTSTTHHH-HHHHHHHHHHH----HHHHHHTTCTTEEEESCCCSSEEEEEEC-
T ss_pred -------ccccccccchhhHHhhhhHHHHHHhhhh-hhccchhhHHH----HHHHHHHhcCCcEeccCCCccEEEEEcC-
Confidence 1111122222333344444444443322 22222222222 33455677777654433 3456666553
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEEec---CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
..+.+.|+++|+.+.+. .+.+||+++..+|+||||+++++|+++
T Consensus 298 ------------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 298 ------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp ------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 23567899999987542 389999999999999999999999874
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.5e-19 Score=203.78 Aligned_cols=367 Identities=11% Similarity=0.024 Sum_probs=215.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
.|+|+.+.+|+....+ .. ...+. .+.-.. .-++...+|++++++++| .+.++|++||++||+.|++
T Consensus 42 ~~idl~sd~~t~~~~~----~~----~a~~~-~gd~~Y--~~~~~~~~le~~~a~l~G---~~~~~~~~sGt~A~~~a~~ 107 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQ----SM----QAAMM-RGDEAF--SGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCTTCSCCCH----HH----HHHTT-SCCCCS--SSCHHHHHHHHHHHHHTC---CSEEEEECSSTTTHHHHHH
T ss_pred eeeeccccccchhhHH----HH----Hhhcc-ccchhh--cCCchHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHH
Confidence 6889888877765432 11 11111 111111 136778899999999998 5789999999999999999
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
++. .++...... + +..++...+.||+.+.+++..+|.... +++.+...
T Consensus 108 ~~~-~~g~~~~~~-~-----------~~~~i~~~~~~~~~~~~~~~~~G~~~~--------------~~~~~~~~----- 155 (467)
T d2v1pa1 108 VLI-KKREQEKGL-D-----------RSKMVAFSNYFFDTTQGHSQINGCTVR--------------NVYIKEAF----- 155 (467)
T ss_dssp HHH-HHHHHHHCC-C-----------TTTCEEEESSCCHHHHHHHHHTTCEEE--------------ECBCTTTT-----
T ss_pred HHh-hccceEecC-C-----------CCcEEEEecccccccHHHHHHcCCeee--------------eccccccc-----
Confidence 995 444333221 1 256788899999999888887663210 00000000
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
.+.. ...+....| .+.+++.+.. .++..++++++||+ ++.+|..+++
T Consensus 156 ----~~~~----------------~~~~~~~~d--------~~~l~~~i~~----~~~~~~~~i~~e~~-~~~~gg~~~~ 202 (467)
T d2v1pa1 156 ----DTGV----------------RYDFKGNFD--------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQPVS 202 (467)
T ss_dssp ----CTTS----------------CCTTTTCBC--------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBCCC
T ss_pred ----cccc----------------ccccccCCC--------HHHHHHHHhh----cCccccceeeecce-eeccccccCC
Confidence 0000 000011122 2456666653 35667899999998 9999889999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccccc---ccccCCcchhhhcC---------CCCcEEEeccccCCCCCCceeeec-c-H
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLG---------CVPDIACYGKLLTGGVIPLAATLA-T-N 705 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TG---fGRtG~~~a~e~~g---------v~PDivt~sKgLggG~~Pigav~~-~-~ 705 (863)
.+++++|+++|++||++||+||++.. +++.+..+++...+ -..|++++++.-+++ .|.|++++ + +
T Consensus 203 ~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~-~~~gg~i~~~~~ 281 (467)
T d2v1pa1 203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM-VPMGGLLCMKDD 281 (467)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC-CSSCEEEEECSG
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC-CCCceeEEecch
Confidence 99999999999999999999999852 11222233333222 357899887655544 46666654 3 3
Q ss_pred HHHHhhhcCC-ccceeecccCCCccHHHHHHH-HHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc
Q 002941 706 AVFDSFVGDS-KLKALLHGHSYSAHALGCAAA-AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (863)
Q Consensus 706 ~i~~~l~~~~-~~~~~~~~~T~~~~pla~AAa-lAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~ 783 (863)
.+........ ......++.++.+.+.+++++ ...+.....+++.++..++++++.+.|.+ ....+..+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-------~~~~v~~~~~~ 354 (467)
T d2v1pa1 282 SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEE-------IGVVCQQAGGH 354 (467)
T ss_dssp GGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-------TTCCEEEECSS
T ss_pred hhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHh-------cCCcccCCCcc
Confidence 3333221100 001112445555555544444 44455555667777777777777764422 12234444444
Q ss_pred ceEEEEEEccCC-cCCCCchHHHHHHHHHHHHCCcEEEe------------------cCCEEEEecC-CCCcHHHHHHHH
Q 002941 784 GTLCAIELQAAG-CNAGYGSLYAASLLKKLREDGVYMRP------------------LGNVIYLMCG-PCSSPEVCSQLL 843 (863)
Q Consensus 784 Gl~~~iel~~~~-~~~~~~~~~~~~l~~~l~e~GV~~~p------------------~g~~lr~~pp-l~~t~eeid~~v 843 (863)
+.++.....-.. ....+. ........+.+.||.... ..+.+|+.+| .++|+||||.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv 432 (467)
T d2v1pa1 355 AAFVDAGKLLPHIPADQFP--AQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFII 432 (467)
T ss_dssp CEEEEHHHHSTTSCGGGCH--HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHH
T ss_pred ceeecchhhcCCcchhhhh--hHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHH
Confidence 444432221111 111111 122334455677775431 1267899766 467999999999
Q ss_pred HHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDK 855 (863)
Q Consensus 844 ~~L~~~l~~l~~ 855 (863)
++|+++.++.++
T Consensus 433 ~~l~~v~~~~~~ 444 (467)
T d2v1pa1 433 EAFKHVKENAAN 444 (467)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHHHHHh
Confidence 999998865443
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.65 E-value=1.8e-14 Score=156.94 Aligned_cols=321 Identities=13% Similarity=0.102 Sum_probs=195.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALk 479 (863)
++||++++ .+.+|. .|.+.+|+.+++..+..+ ++.-..+|.+.|++..+-+ .+.|+.+++..++....+.
T Consensus 23 ~~idls~~--~np~~~--p~~~~~a~~~~~~~~~~Y-----p~~~~~~Lr~aia~~~~v~-~~~I~~~~g~~~~~~~~~~ 92 (355)
T d1lc5a_ 23 QLLDFSAN--INPLGM--PVSVKRALIDNLDCIERY-----PDADYFHLHQALARHHQVP-ASWILAGNGETESIFTVAS 92 (355)
T ss_dssp GSEECSSC--CCTTCC--CHHHHHHHHHTGGGGGSC-----CCTTCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHH
T ss_pred heEEccCC--CCCCCC--CHHHHHHHHHHHHHhccC-----CCCChHHHHHHHHHHhCCC-HHHEEecccHHHHHHHHHh
Confidence 68998763 577885 699999999988776432 2222246778888877654 4678888777776655443
Q ss_pred HHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCce
Q 002941 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (863)
Q Consensus 480 lA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (863)
.. .+ ..++...-+|+.......... .++
T Consensus 93 ~~-----------~~------------~~~~v~~p~~~~~~~~~~~~~-----------------------------~~~ 120 (355)
T d1lc5a_ 93 GL-----------KP------------RRAMIVTPGFAEYGRALAQSG-----------------------------CEI 120 (355)
T ss_dssp HH-----------CC------------SEEEEEESCCTHHHHHHHHTT-----------------------------CEE
T ss_pred hh-----------cc------------ccccccCCccceecccccccc-----------------------------ccc
Confidence 32 12 223344445543322211110 011
Q ss_pred eeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCC
Q 002941 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (863)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (863)
..++++... .+. .+ +.+++.. .++.-+.+|+.| ++..|... +
T Consensus 121 ~~v~~~~~~-----------------~~~--~~---------~~~~~~~-------~~~~~~v~l~nP--~NPtG~~~-~ 162 (355)
T d1lc5a_ 121 RRWSLREAD-----------------GWQ--LT---------DAILEAL-------TPDLDCLFLCTP--NNPTGLLP-E 162 (355)
T ss_dssp EEEECCGGG-----------------TTC--CC---------TTHHHHC-------CTTCCEEEEESS--CTTTCCCC-C
T ss_pred eeeeeeccC-----------------Ccc--ce---------eeeeecc-------ccccceeeeecc--cCcccccc-h
Confidence 122222100 000 01 0111222 123345666777 78888654 7
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeeccHH-HHHhhhcC
Q 002941 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNA-VFDSFVGD 714 (863)
Q Consensus 640 ~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~-i~~~l~~~ 714 (863)
.+.+++|.++|++|++++|.||++..|...+...... ....+.++ ++||.++ .| +.+|+++++.+ +...+..
T Consensus 163 ~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~l~G-lR~G~~i~~~~~~~~~~~~- 239 (355)
T d1lc5a_ 163 RPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA-LKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRR- 239 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG-CTTCTTEEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHH-
T ss_pred hhhhhhhhhhccccccccccccceeeeeeeccccccc-ccccccceeeccccccccccc-ccccceeccchhhhHHHHh-
Confidence 8999999999999999999999998876554432221 12233433 7899987 77 89999998755 4444432
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccC
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~ 794 (863)
+..++..+.+++.++.++|+ +.++....++..+.-++ .+.+.+.+.+.+....+.|.++.+.+..+
T Consensus 240 -------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~p~~~~f~~~~~~~~ 305 (355)
T d1lc5a_ 240 -------QQMPWSVNALAALAGEVALQ---DSAWQQATWHWLREEGA----RFYQALCQLPLLTVYPGRANYLLLRCERE 305 (355)
T ss_dssp -------HSCTTCSCHHHHHHHHHGGG---CHHHHHHHHHHHHHHHH----HHHHHHHTSTTEEECCCSSSEEEEEESCT
T ss_pred -------hcCCcccccccccccccccc---ccchhHHHHHHHHHHHH----HHHHHHhhcCCcEECCCCCEEEEEECCCC
Confidence 33456778888888877765 44333333333333233 23344556666554566677787877643
Q ss_pred CcCCCCchHHHHHHHHHHHHCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 795 GCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 795 ~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
..++++.|.++||++++. .+.+||+. -+++|+++++++|+++|
T Consensus 306 ----------~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~---~~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 306 ----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVL 355 (355)
T ss_dssp ----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe---CCHHHHHHHHHHHHHhC
Confidence 234778899999999873 26899873 38899999999988764
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=2.2e-14 Score=158.14 Aligned_cols=336 Identities=12% Similarity=0.058 Sum_probs=197.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
+.||+..|- ..+. ..|+|.+|+.++++...+. ....+..+....+++.+.+..+.+ ..+.+++++++++|+..+
T Consensus 32 ~vi~l~~g~--p~~~--~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~ 107 (382)
T d1b5pa_ 32 DLVALTAGE--PDFD--TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (382)
T ss_dssp CCEECCCSS--CSSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCCC--CCCC--CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHH
Confidence 567766542 2333 4689999999988763221 112223344556666666544422 136899999999999988
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.... .| ..|+...-+|.+....+. ..|.
T Consensus 108 ~~~l~~---------~g------------d~vl~~~P~y~~~~~~~~-~~g~---------------------------- 137 (382)
T d1b5pa_ 108 FQAILD---------PG------------DEVIVLSPYWVSYPEMVR-FAGG---------------------------- 137 (382)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTHHHHHHH-HTTC----------------------------
T ss_pred HHHhCC---------CC------------CEEEECCCCcHHHHHHHH-HhcC----------------------------
Confidence 876521 12 568999999887643222 1110
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
..+.+|... .+.+ ..| .+.+++.+ .+...+.+++.| ++..|.+
T Consensus 138 --~~~~v~~~~---------------~~~~--~~d--------~~~l~~~~-------~~~~~~i~~~~P--~NPTG~~- 180 (382)
T d1b5pa_ 138 --VVVEVETLP---------------EEGF--VPD--------PERVRRAI-------TPRTKALVVNSP--NNPTGAV- 180 (382)
T ss_dssp --EEEEEECCG---------------GGTT--CCC--------HHHHHTTC-------CTTEEEEEEESS--CTTTCCC-
T ss_pred --eEEEEeccc---------------cccc--CCC--------HHHHHHhC-------CCCCeEEEECCC--CCCcchh-
Confidence 001111000 0000 011 12233222 233455677788 8899855
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
.+.+.+++|.++|++||+++|.||++..+...|....... ..+| ++ ++||.++ .| +.+|++++++++++.+.
T Consensus 181 ~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~~ 257 (382)
T d1b5pa_ 181 YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR--VAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMA 257 (382)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG--TCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHH--cCCCCEEEEecchhhccCcH-hheEEEEECHHHHHHHH
Confidence 5788999999999999999999999998855565433222 2223 33 6799997 77 89999999999988765
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHh-cChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEE
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWF-KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIE 790 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l-~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ie 790 (863)
.- ....+...+.....++.+.+... ....+....++..+..++.+.+ .+...+ +..+... |.++.++
T Consensus 258 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~g-~~~~~p~gg~~~~~~ 326 (382)
T d1b5pa_ 258 SV------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLE----GLTALG-LKAVRPSGAFYVLMD 326 (382)
T ss_dssp HH------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHT-CCBCCCSBTTEEEEE
T ss_pred HH------HHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHH----HHhhcC-CeEecCCceEEEeEe
Confidence 31 12233344444444444444321 1222333333433333433322 222322 2223333 5677777
Q ss_pred EccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 849 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~ 849 (863)
+.... .....+.+.|.++||++.|+ .+.+|+. +..++|++++++++|.++
T Consensus 327 ~~~~~-------~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis--~~~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 327 TSPIA-------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YATSEENLRKALERFARV 381 (382)
T ss_dssp CTTTC-------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CCSCHHHHHHHHHHGGGG
T ss_pred CCCCC-------CCHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--EcCCHHHHHHHHHHHHHh
Confidence 75421 01456788899999999984 2788886 456889999999888765
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.60 E-value=4.8e-14 Score=155.88 Aligned_cols=340 Identities=10% Similarity=0.020 Sum_probs=205.4
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
..+|+..|- -.+. ..|.|.+|++++++...+ +....+.-+....+++.+.+..+.. ..+.+++++++++|+..+
T Consensus 31 ~vi~l~~G~--p~~~--~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 106 (388)
T d1j32a_ 31 DVCSFSAGE--PDFN--TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNL 106 (388)
T ss_dssp CCEECCCSS--CSSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCCC--CCCC--CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHH
Confidence 677776542 2333 468999999998876321 1111122234556677776654422 135799999999999998
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.... .| ..|++..-+|.+........++
T Consensus 107 ~~~~~~---------~g------------d~Vlv~~P~y~~~~~~~~~~~~----------------------------- 136 (388)
T d1j32a_ 107 MLAMIE---------PG------------DEVIIPAPFWVSYPEMVKLAEG----------------------------- 136 (388)
T ss_dssp HHHHCC---------TT------------CEEEEESSCCTHHHHHHHHTTC-----------------------------
T ss_pred HHHHhC---------CC------------CEEEEcCCCcHHHHHHHHHhcC-----------------------------
Confidence 875510 12 5788888888765322211110
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
..+.+|... +..| .-| .+.+++.+. +...+.+++.| ++..|.+
T Consensus 137 --~~v~~~~~~---------------~~~~--~~d--------~~~l~~~~~-------~~~~~~~~~~P--~NPTG~~- 179 (388)
T d1j32a_ 137 --TPVILPTTV---------------ETQF--KVS--------PEQIRQAIT-------PKTKLLVFNTP--SNPTGMV- 179 (388)
T ss_dssp --EEEEECCCG---------------GGTT--CCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred --eEEEEeccc---------------cccc--CCC--------HHHHHHhCC-------CCCeEEEECCC--CCCCCcc-
Confidence 001111000 0000 011 234555543 34556778888 7899855
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCC-----c--EEEeccccC-CCCCCceeeeccHHHHH
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-----D--IACYGKLLT-GGVIPLAATLATNAVFD 709 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P-----D--ivt~sKgLg-gG~~Pigav~~~~~i~~ 709 (863)
.+.+.+++|.++|++||+++|.||++..+...+..+..- ....| . +-+|||.++ .| +++|++++++++++
T Consensus 180 ~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~-~~~~~~~~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 180 YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI-GAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVK 257 (388)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHH
T ss_pred cchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCH-HHhCcccccceeEecCChhhhhcch-hHeEEEEECHHHHH
Confidence 578889999999999999999999997665444321110 00111 1 236899987 67 89999999999998
Q ss_pred hhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEE
Q 002941 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCA 788 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ 788 (863)
.+... ....+...++.+..++.+.+.. .+++.++.++.-+..++. +.+.+.+++.+...... |.++.
T Consensus 258 ~~~~~------~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~l~~~~g~~~~~p~gg~~l~ 325 (388)
T d1j32a_ 258 AATKI------QGHSTSNVCTFAQYGAIAAYEN--SQDCVQEMLAAFAERRRY----MLDALNAMPGLECPKPDGAFYMF 325 (388)
T ss_dssp HHHHH------HHTTTCSCCHHHHHHHHHHHHS--CSHHHHHHHHHHHHHHHH----HHHHHHTCTTCBCCCCCBTTEEC
T ss_pred HHHHh------hhhccccccHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHH----HHHHHHhCCCCEecCCCceEEEE
Confidence 77531 1223445566777666666653 233444444433333332 23445566555444444 45666
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+++.... ....+++..|+ ++||.+.|+ .+.+|+. +..+++++++++++|+++++.+
T Consensus 326 ~~l~~~~-------~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls--~~~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 326 PSIAKTG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLS--YATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CBCGGGT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCC-------CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EeCCHHHHHHHHHHHHHHHHHh
Confidence 6665321 01345666665 679999984 2778886 4578899999999999988764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=5.3e-14 Score=154.85 Aligned_cols=342 Identities=13% Similarity=0.055 Sum_probs=200.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCC--CCCCeEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGK--GWASRAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~--~~~~~v~f~~SGSeAvE~ 476 (863)
..||+..|. ..++ .++.|.+|+.+++++... +....+..+....+|+.+.+..+. ...+.+++++++++|+..
T Consensus 26 dvi~l~~g~--p~~~--~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 101 (388)
T d1gdea_ 26 DVISLGIGE--PDFD--TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 101 (388)
T ss_dssp TCEECCCCS--CCSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEECCCCC--CCCC--CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence 566665442 2344 478999999999876321 111122334555666666543221 113569999999999988
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
++....+ .| .+|++..-+|.+....+...+.
T Consensus 102 ~~~~l~~---------~g------------d~vlv~~P~y~~~~~~~~~~g~---------------------------- 132 (388)
T d1gdea_ 102 GLSAFLK---------DG------------EEVLIPTPAFVSYAPAVILAGG---------------------------- 132 (388)
T ss_dssp HHTTTCC---------TT------------CEEEEEESCCTTHHHHHHHHTC----------------------------
T ss_pred HHHHhcC---------CC------------CEEEECCCCcHHHHHHHHHcCC----------------------------
Confidence 8765421 12 5788889888776443332211
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
..+.+|-.. ...| .-| .+.+++.+. +...+.++..| ++..|..
T Consensus 133 ---~~~~~~~~~---------------~~~~--~~d--------~~~l~~~~~-------~~~~~i~~~~P--~NPtG~~ 175 (388)
T d1gdea_ 133 ---KPVEVPTYE---------------EDEF--RLN--------VDELKKYVT-------DKTRALIINSP--CNPTGAV 175 (388)
T ss_dssp ---EEEEEECCG---------------GGTT--CCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC
T ss_pred ---EEEEeeccc---------------ccCC--CCC--------HHHHHHhCc-------cCCeEEEECCC--cCCCCCc
Confidence 001111000 0000 011 234555442 23456777788 7888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-hhhhcCCCCc-EE---EeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PD-iv---t~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
.+++.+++|.++|++||+++|.||++..|...+..+ ....+.-.+| ++ +|||.++ .| +.+|++++++++.+.
T Consensus 176 -~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~ 253 (388)
T d1gdea_ 176 -LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIER 253 (388)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCcc-ccEEEEEeeccchhh
Confidence 578889999999999999999999998775444322 2222222233 33 6899997 67 899999999998887
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~i 789 (863)
+... ....+...+.....++.++|+ ++++.+.+....+.+.+... .+.+.+..... ..+... |.++.+
T Consensus 254 ~~~~------~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~p~gg~fl~~ 322 (388)
T d1gdea_ 254 MVKF------QMYNATCPVTFIQYAAAKALK---DERSWKAVEEMRKEYDRRRK-LVWKRLNEMGL-PTVKPKGAFYIFP 322 (388)
T ss_dssp HHHH------HHTTTCSCCHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTC-CCCCCCBTTEECC
T ss_pred hhhc------cccccccccccchhhHHHHHh---hccchhHHHHHHHHHHHhhh-hhhhhhhhccc-cccCCCceEEEEE
Confidence 7641 123344455555555555553 33333333322222222211 22333333332 123333 567667
Q ss_pred EEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
++.+.. ....++++.|+ ++||++.|+ .+.+|+. +..++|++++++++|.+++++.
T Consensus 323 ~l~~~~-------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis--~~~~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 323 RIRDTG-------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--YATAYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp BCGGGT-------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCC-------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence 775321 01456677665 679999874 2678885 4578899999999999988764
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.58 E-value=5.8e-14 Score=155.47 Aligned_cols=332 Identities=12% Similarity=0.037 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHhcc-----cccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhcccc
Q 002941 419 IELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~-----~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~ 492 (863)
+.+.+|+.+.++... |.. ..+..+....+|+.+.+..+.+ ..+.+++++++++|+..+++....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~-~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~--------- 116 (403)
T d1wsta1 47 ETIKKIAVEVLEEHADKALQYGT-TKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLN--------- 116 (403)
T ss_dssp HHHHHHHHHHHHHSHHHHHSCCC-SSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHhCcccccCCCC-CcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhh---------
Confidence 356666666554322 221 2223345566777777655432 146899999999999998886520
Q ss_pred ccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhh
Q 002941 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (863)
Q Consensus 493 tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (863)
.| ..|+...-+|.+........+. ..+++|...
T Consensus 117 ~g------------d~v~~~~P~y~~~~~~~~~~g~-------------------------------~~~~v~~~~---- 149 (403)
T d1wsta1 117 PG------------DPIVVEAPTYLAAIQAFKYYDP-------------------------------EFISIPLDD---- 149 (403)
T ss_dssp TT------------CEEEEEESCCHHHHHHHHTTCC-------------------------------EEEEEEEET----
T ss_pred cC------------CccccCCCcchhhhHHHhhccc-------------------------------cceeEeecc----
Confidence 12 5788888888776443322110 001111100
Q ss_pred ccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHH
Q 002941 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (863)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~ 652 (863)
...+.... ....+..... .....+.-++..| ++..|.. .+.+.+++|.++|++
T Consensus 150 ----------------~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~p--~NPtG~~-~s~~~l~~i~~~a~~ 202 (403)
T d1wsta1 150 ----------------KGMRVDLL----EEKLEELRKQ----GKRVKIVYTVSTF--QNPAGVT-MSVDRRKKLLELANE 202 (403)
T ss_dssp ----------------TEECHHHH----HHHHHHHHHT----TCCCCEEEECCSS--CTTTCCC-CCHHHHHHHHHHHHH
T ss_pred ----------------cCCccccc----cccchhhhhc----ccccccccccccc--CCCCCcc-CCHHHHHHHHHHHHh
Confidence 00110011 1112222221 1233344444455 7888855 477889999999999
Q ss_pred cCCeEEEecccccccccCCcch-hhhc---CCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccceeecccCCCc
Q 002941 653 RKIPVIFDEVFTGFWRLGVETT-ADLL---GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728 (863)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a-~e~~---gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~ 728 (863)
||++||.||++..|...|.... .... +...-+.++||.++.| +++|++++++++++.+... ....+...
T Consensus 203 ~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~RiG~~i~~~~~i~~~~~~------~~~~~~~~ 275 (403)
T d1wsta1 203 YDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPG-FRIGWVAAHPHLIRKMEIA------KQSIDLCT 275 (403)
T ss_dssp TTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHHH------HHHHHSSC
T ss_pred cCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCc-ccccccccchHHHHHHHHH------Hhhhcccc
Confidence 9999999999988855554322 2222 2222233779999888 8999999999999876531 12233455
Q ss_pred cHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHH
Q 002941 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAAS 807 (863)
Q Consensus 729 ~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~ 807 (863)
++....+..+.++....+.+..++.+.....++.+.+.+.+.+. ..+.... .-|+++.+++.... ....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~p~gg~~~~~~~~~~~--------~~~~ 345 (403)
T d1wsta1 276 NTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMP--EGVEWTKPEGGMFVRVTLPEGI--------DTKL 345 (403)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--TTCEECCCSBSSEEEEECCTTC--------CTTT
T ss_pred ccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhcc--CCeEEeCCCceeEEEEECCCCC--------CHHH
Confidence 56665555555553333334455555554555544333332211 1233333 34677778886532 1335
Q ss_pred HHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 808 LLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 808 l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+++.|.++||++.|+ .+.+|+.. ...+++++++++++|.+++++
T Consensus 346 ~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~-~~~~~~~l~~al~rl~~~l~~ 398 (403)
T d1wsta1 346 MMERAVAKGVAYVPGEAFFVHRDKKNTMRLNF-TYVPEETIREGVRRLAETIKE 398 (403)
T ss_dssp THHHHHHTTEECEEGGGGSTTCCCCSEEEEEC-SSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEechhhcCCCCCCCEEEEEe-cCCCHHHHHHHHHHHHHHHHH
Confidence 777899999999874 16789874 236899999999999998874
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.56 E-value=2.5e-13 Score=148.38 Aligned_cols=316 Identities=15% Similarity=0.086 Sum_probs=192.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChH-HHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEP-ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~-~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr 495 (863)
.+|.+++|+++.+++.. .|+.+. ..+|.+.++++.+-. .++++++++|++|+..+++... ++
T Consensus 39 ~p~~i~~al~~~l~~~~-----~Y~~~~G~~elr~aiA~~~~~~-~~~Iiit~G~~~al~~~~~~l~-----------~~ 101 (368)
T d1v2da_ 39 PPPFLLEAVRRALGRQD-----QYAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQSLV-----------GP 101 (368)
T ss_dssp CCHHHHHHHHHHTTTSC-----SCCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHHHHC-----------CT
T ss_pred CCHHHHHHHHHHhhccc-----CCCCCcCCHHHHHHHHhhcccC-CcceeeccchHHHHHHHhhccc-----------cc
Confidence 46899999999887542 222222 356777777777644 4789999999999999887652 11
Q ss_pred cCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccc
Q 002941 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (863)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (863)
...|+....+|+.........+. .+..++.+...
T Consensus 102 ----------~d~v~~~~p~~~~~~~~~~~~g~-----------------------------~~~~~~~~~~~------- 135 (368)
T d1v2da_ 102 ----------GDEVVVLEPFFDVYLPDAFLAGA-----------------------------KARLVRLDLTP------- 135 (368)
T ss_dssp ----------TCEEEEEESCCTTHHHHHHHTTC-----------------------------EEEEEECEEET-------
T ss_pred ----------cccccccCCcchhhhhHHHhcCC-----------------------------ccceecccccc-------
Confidence 15677777777765433222110 00111111000
Q ss_pred cccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCC
Q 002941 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (863)
Q Consensus 576 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gi 655 (863)
....-| .+.+++.+ .+.....+++.| ++..|.+ .+.+.+++|.++|++||+
T Consensus 136 -----------~~~~~d--------~~~l~~~~-------~~~~~~i~~~~p--~NPtG~~-~~~~~l~~l~~~a~~~~i 186 (368)
T d1v2da_ 136 -----------EGFRLD--------LSALEKAL-------TPRTRALLLNTP--MNPTGLV-FGERELEAIARLARAHDL 186 (368)
T ss_dssp -----------TEEECC--------HHHHHTTC-------CTTEEEEEEESS--CTTTCCC-CCHHHHHHHHHHHHHTTC
T ss_pred -----------ccccCC--------HHHHHHhh-------ccCceEEEEcCC--CCccccc-CCHHHHHHHHHHHHHcCC
Confidence 000011 12333333 234556677888 7899955 478889999999999999
Q ss_pred eEEEecccccccccCCcchhhhcCCCCc--EEEeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHH
Q 002941 656 PVIFDEVFTGFWRLGVETTADLLGCVPD--IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALG 732 (863)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PD--ivt~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla 732 (863)
++|.||++..+................. +.++||..+ .| +++|++++++++.+.+... ....+.+.++..
T Consensus 187 ~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G-~R~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 259 (368)
T d1v2da_ 187 FLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGM------RQWTSFSAPTPL 259 (368)
T ss_dssp EEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHH------HHHHTSSCCHHH
T ss_pred eeeechhhhhhcccccccccccccccccceeecccccccccc-cccccccccccccchhhhh------hhcccccccccc
Confidence 9999999964433333222222211222 346787655 35 8999999999988876541 233455666777
Q ss_pred HHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHH
Q 002941 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKK 811 (863)
Q Consensus 733 ~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~ 811 (863)
..++.+++...+..++.+.+++..+..++.+. +.+.+++. ...... |.++.+.+.... + .+.
T Consensus 260 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~g~-~~~~p~g~~~~~~~l~~~~---------~---~~l 322 (368)
T d1v2da_ 260 QAGVAEALKLARREGFYEALREGYRRRRDLLA----GGLRAMGL-RVYVPEGTYFLMAELPGWD---------A---FRL 322 (368)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH----HHHHHTTC-CEECCSBSSEEEEECTTCC---------H---HHH
T ss_pred ccccccccccccchhhHHHHHHHHHHhhhhhh----hhHHhcCc-EEecCCceeEEEEeCCccH---------H---HHH
Confidence 66666666654444455555554444444443 33444442 333444 567777775332 2 234
Q ss_pred HHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 812 LREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 812 l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
|.++||++.|+ .+.+|++ ++.++|++++++++|.++|
T Consensus 323 l~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 323 VEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLALERLGRVV 368 (368)
T ss_dssp HHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred HHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence 67899999873 2678986 4578999999999998764
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.53 E-value=1.1e-13 Score=144.47 Aligned_cols=320 Identities=12% Similarity=0.006 Sum_probs=162.4
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhcccccccc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~ 496 (863)
.||+|++|+.++.....+. .+..+...++.++++++++.+ .+.|+|++||+|||..|++.+.+ .
T Consensus 12 ~~P~v~eAl~~~~~~~~~~---y~~~~~~~~lr~~ia~~~g~~-~~~v~~tsggtean~~a~~~~~~----------~-- 75 (340)
T d1svva_ 12 MHPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLALR----------P-- 75 (340)
T ss_dssp CCHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHCC----------T--
T ss_pred CCHHHHHHHHHHhhcCCCC---CCCCHHHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHHHHHHhh----------h--
Confidence 6899999999876544321 124566778999999999865 46899999999999999987621 1
Q ss_pred CCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccc
Q 002941 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (863)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (863)
..+++.....++................ ...+...
T Consensus 76 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~-------- 110 (340)
T d1svva_ 76 ---------WEAVIATQLGHISTHETGAIEATGHKVV----------------------------TAPCPDG-------- 110 (340)
T ss_dssp ---------TEEEEEETTSHHHHSSTTHHHHTTCCEE----------------------------EECCTTS--------
T ss_pred ---------ccccccccccceeeeecccccccceeee----------------------------ecccccc--------
Confidence 1345554444433322211111100000 0000000
Q ss_pred ccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCe
Q 002941 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (863)
Q Consensus 577 ~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gil 656 (863)
..+ .. . ..+..... .........+++... .+.+|. +.+.+.+..+.+.|+++|++
T Consensus 111 -------------~~~---~~-~----~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~g~~ 165 (340)
T d1svva_ 111 -------------KLR---VA-D----IESALHEN--RSEHMVIPKLVYISN-TTEVGT-QYTKQELEDISASCKEHGLY 165 (340)
T ss_dssp -------------CCC---HH-H----HHHHHHHS--CSTTSCEEEEEEEES-SCTTSC-CCCHHHHHHHHHHHHHHTCE
T ss_pred -------------ccc---ch-h----HHHHhhhh--hcccCCcceeeeecc-cccccc-cccHHHhhhhhcccccccce
Confidence 000 00 0 00111110 011222333333332 344554 44667788999999999999
Q ss_pred EEEecccccccccCC--cchhhhcCCCCcEEEeccccCCCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHH
Q 002941 657 VIFDEVFTGFWRLGV--ETTADLLGCVPDIACYGKLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGC 733 (863)
Q Consensus 657 LI~DEV~TGfGRtG~--~~a~e~~gv~PDivt~sKgLggG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~ 733 (863)
+++|+++.+...... .+.........++.++++..+++ .+.+.... .......... ......++......+.
T Consensus 166 ~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 240 (340)
T d1svva_ 166 LFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-MFGEALIILNDALKPNARH----LIKQRGALMAKGWLLG 240 (340)
T ss_dssp EEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-SSCEEEEECSGGGCTTHHH----HHHHTTCCCTTTHHHH
T ss_pred eeeeccceeeeecccccccccccccccceeeecCCccccc-cccccccccchhhhhhhhh----hcccccCccchhhHHH
Confidence 999999975433322 22222222234566666655544 33333333 2222222211 0112233333344444
Q ss_pred HHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHH
Q 002941 734 AAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 813 (863)
Q Consensus 734 AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~ 813 (863)
+++.+ .++...+. ...+....++..+... +...+........+.++.+.+.. .....|.
T Consensus 241 aa~~~---~~~~~~~~-~~~~~~~~~~~~~~~~----l~~~g~~~~~p~~~~~v~~~~~~-------------~~~~~l~ 299 (340)
T d1svva_ 241 IQFEV---LMKDNLFF-ELGAHSNKMAAILKAG----LEACGIRLAWPSASNQLFPILEN-------------TMIAELN 299 (340)
T ss_dssp HHHHH---HTSTTHHH-HHHHHHHHHHHHHHHH----HHHTTCCBSSCCSSSEECBEEEH-------------HHHHHHT
T ss_pred HHHHH---HhhhhHHH-HHHHHHHHHHhhhHHH----HhcCCCeeecCCCceEEEEeCCH-------------HHHHHHH
Confidence 44333 34333322 2233333333333222 33323211112344555555432 2344455
Q ss_pred HCCcE----EEecC-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 814 EDGVY----MRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 814 e~GV~----~~p~g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+++.. ..+.+ ..+||+++..+|+||||+++++|++
T Consensus 300 ~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 300 NDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp TTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55543 33333 7899999999999999999999876
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=3.7e-12 Score=138.54 Aligned_cols=330 Identities=11% Similarity=-0.011 Sum_probs=182.0
Q ss_pred CcHHHHHHHHHHHHhc--ccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHHHHHHHHHHhhccccc
Q 002941 417 LQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~t 493 (863)
..|.|.+|+.+.++.. .|.. ..+ .+....+++.+.+..+.+ ..+.|+.++++++|+..++....+ +
T Consensus 13 ~p~~i~eal~~~~~~~~~~Y~~-~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~---------~ 81 (361)
T d1d2fa_ 13 TAPCIIEALNQRLMHGVFGYSR-WKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE---------T 81 (361)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCC-SCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC---------T
T ss_pred CCHHHHHHHHHHHhCCCCCCCC-CCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccc---------c
Confidence 4799999999987642 2211 111 244556677776655532 136899999999999887765521 1
Q ss_pred cccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhc
Q 002941 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (863)
Q Consensus 494 gr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (863)
| .+|++...+|.+..... ...+.. .+++|...
T Consensus 82 g------------d~Vlv~~P~y~~~~~~~-~~~g~~------------------------------~~~v~~~~----- 113 (361)
T d1d2fa_ 82 G------------EGVVIHTPAYDAFYKAI-EGNQRT------------------------------VMPVALEK----- 113 (361)
T ss_dssp T------------CEEEEEESCCHHHHHHH-HHTTCE------------------------------EEEEECEE-----
T ss_pred c------------cccccccccccchhHHH-Hhhcce------------------------------EEeecccc-----
Confidence 2 46888888886653221 111100 00111000
Q ss_pred cccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCceeCCHHHHHHHHHHHHH
Q 002941 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (863)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAA-vIvEPViqg~gG~~~pp~~fL~~Lrelc~~ 652 (863)
..+.+ ..| .+.+++.+.+ .++.+ ++..| ++..|... +.+.+++|.++|++
T Consensus 114 ---------~~~~~--~~d--------~~~~~~~~~~-------~~~~~i~l~~p--~NPTG~~~-s~~~~~~i~~~~~~ 164 (361)
T d1d2fa_ 114 ---------QADGW--FCD--------MGKLEAVLAK-------PECKIMLLCSP--QNPTGKVW-TCDELEIMADLCER 164 (361)
T ss_dssp ---------CSSSE--ECC--------HHHHHHHHTS-------TTEEEEEEESS--CTTTCCCC-CTTHHHHHHHHHHH
T ss_pred ---------ccccc--ccc--------cccchhhccc-------CCceeEEeccc--cccccccc-chhhhhhhhhhhhh
Confidence 00000 011 1344555532 34444 45555 78888554 66779999999999
Q ss_pred cCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeecc-HHHHHhhhcCCccceeecccCCC
Q 002941 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYS 727 (863)
Q Consensus 653 ~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~ 727 (863)
||+++|.||++.+|-..+.....-......+.+ ++||.++ .| +.+|++... +...+.....- .......+
T Consensus 165 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g-~R~g~~~~~~~~~~~~~~~~~----~~~~~~~~ 239 (361)
T d1d2fa_ 165 HGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSAL----KGRDGLSS 239 (361)
T ss_dssp TTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHH----HTTSCCCS
T ss_pred hheeeeeccccccccccccccccccccccccccccccccccccccc-ccceeeecchhHHHHHHhhhc----cccccccc
Confidence 999999999998874444322111111123444 3488776 45 788887654 33323222100 00111223
Q ss_pred ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHH
Q 002941 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAA 806 (863)
Q Consensus 728 ~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~ 806 (863)
.+..++++++..++.. .++.+.++...++.++.+.+.+.+ ..+.+...... |.++.+++.... ....
T Consensus 240 ~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~~p~gg~~~~~~l~~~~-------~~~~ 307 (361)
T d1d2fa_ 240 PSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIADKMNA---AFPELNWQIPQSTYLAWLDLRPLN-------IDDN 307 (361)
T ss_dssp CCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCCSBCSEEEEECGGGC-------CCHH
T ss_pred chhhhHHHHHHHhhcc--chhhhcccccchhhHHHHHHHhhh---hcccccccccCceeEEEEEccCCC-------CCHH
Confidence 3445555555555532 333444444333333333222222 22333323333 566677775321 0156
Q ss_pred HHHHHHHH-CCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 807 SLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 807 ~l~~~l~e-~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+++..|++ +||++.|+ .+.+|++ +..++|++++++++|.++++++
T Consensus 308 ~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 308 ALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp HHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHHhc
Confidence 78887765 49999873 2678986 4578899999999999988775
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.50 E-value=5.2e-13 Score=146.30 Aligned_cols=338 Identities=12% Similarity=0.090 Sum_probs=195.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCC-----CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||.. ..|. ....|.+|+.+.++.+....... ...+...++.+.|+++++.+ .++++|++||++|+
T Consensus 9 ~yld~~------~~~~-~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 9 TYFNFG------GQGI-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGC 80 (381)
T ss_dssp EECCTT------TCCC-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHH
T ss_pred EEeeCC------cccC-CCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCC-cccEEEECChHHHh
Confidence 577733 3454 44568899988876543221000 11123445666788888754 46899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
..++... + . . .| ..|++....|++.......+.. ..+.
T Consensus 81 ~~~~~~l-~-~--~----~g------------~~i~~~~~~~~s~~~~~~~~~~--------------~~g~-------- 118 (381)
T d1elua_ 81 DIVLWGL-D-W--H----QG------------DEILLTDCEHPGIIAIVQAIAA--------------RFGI-------- 118 (381)
T ss_dssp HHHHHHS-C-C--C----TT------------CEEEEETTCCHHHHHHHHHHHH--------------HHCC--------
T ss_pred hhcchhh-h-h--c----CC------------ceEEEeccccceeeeccccccc--------------cccc--------
Confidence 8887644 1 0 0 11 5688877777654322111100 0000
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+..++.+... ...+ .++.+++. ...++.++++..+ ++..|
T Consensus 119 ---~~~~v~~~~~~--------------------~~~~-----------~~~~l~~~----i~~~t~~v~i~~~-~n~tG 159 (381)
T d1elua_ 119 ---TYRFFPVAATL--------------------NQGD-----------AAAVLANH----LGPKTRLVILSHL-LWNTG 159 (381)
T ss_dssp ---EEEEECCGGGS--------------------SSSC-----------HHHHHHTT----CCTTEEEEEEESB-CTTTC
T ss_pred ---ccccccccccc--------------------ccch-----------HHHHHHhh----hcccccccccccc-ccccc
Confidence 00111111000 0001 11233321 1346778888886 88899
Q ss_pred ceeCCHHHHHHHHHHHHHc----CCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHH
Q 002941 635 MHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~----gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~ 708 (863)
.+.| +++|.++|++| |+++++|.+| ++|.. .+-.+ ...+|+++++ |.+++. ..+|++.++++..
T Consensus 160 ~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~-~~g~~--~~~~~--~~~~D~~~~s~~K~~~~p-~G~g~l~~~~~~~ 229 (381)
T d1elua_ 160 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQ-SAGSL--PLDFS--RLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCL 229 (381)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTT-TBTTB--CCCTT--TSCCSEEEEESSSTTCCC-TTCEEEEECTTTG
T ss_pred ccch----hhHHHHHHhhccccccccccccccc-ccccc--ccccc--cccccccccccccccccc-chhhHHHhhHHHH
Confidence 8888 88999999985 6999999998 45432 22222 3358988765 999876 5678888888887
Q ss_pred HhhhcCCc-cceeec---------------ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 002941 709 DSFVGDSK-LKALLH---------------GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (863)
Q Consensus 709 ~~l~~~~~-~~~~~~---------------~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~ 772 (863)
+.+..... +..... ....+.+.....+..++++.+.+.+..+...+....+.+.+.+ .++
T Consensus 230 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~----~L~ 305 (381)
T d1elua_ 230 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWR----GLN 305 (381)
T ss_dssp GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----HHH
T ss_pred HhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHH----HHh
Confidence 76542100 000000 0111244556667777777765433322222333334443333 334
Q ss_pred cCCCeeE---ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 773 SHRTVQR---VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 773 ~~p~v~~---vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+.|.+.- ...++.++.+.+.... ....+.+.|.++||.++..+ +.+|+++...+|+||||+++++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~vsf~~~~~~--------~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~ 377 (381)
T d1elua_ 306 QLPHVHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLA 377 (381)
T ss_dssp HSTTEEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred cCCCeEecCCCCccccEEEEEcCCCC--------CHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 4444322 2235667777665432 24568889999999987654 899999888889999999999987
Q ss_pred H
Q 002941 848 Q 848 (863)
Q Consensus 848 ~ 848 (863)
+
T Consensus 378 e 378 (381)
T d1elua_ 378 D 378 (381)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=1.9e-12 Score=144.13 Aligned_cols=218 Identities=14% Similarity=0.153 Sum_probs=138.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCc-E---EEeccccCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD-I---ACYGKLLTG 693 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PD-i---vt~sKgLgg 693 (863)
....+++-+- ++..|.+ .+.+.++++.++|++|++++|.||++..|...|.... ....+ .|+ + ..++|....
T Consensus 183 ~~~~~~~~~p-~NPtG~~-~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~s~sk~~~~ 259 (420)
T d1vp4a_ 183 VKFIYVVSNF-HNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLAP 259 (420)
T ss_dssp EEEEEEECSS-CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTTCG
T ss_pred cceeeEecCC-CCccchh-hhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-cccceeEEecccccccc
Confidence 3444444332 7888855 5788899999999999999999999988855554221 11111 233 2 246787777
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
| +.+|++++++++++.+... ....+.+.+.+..+++.+.++.-.-.+...+..+..++.++.+.+.+.+.+.+
T Consensus 260 G-~RiG~~~~~~~~i~~l~~~------~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 332 (420)
T d1vp4a_ 260 G-LRIGMVAGSKEFIRKIVQA------KQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD 332 (420)
T ss_dssp G-GCEEEEECCHHHHHHHHHH------HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred c-cccccccccchhhhhhhhh------hhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhcc
Confidence 8 8999999999999987641 12233444556655555555432111122223333333334444444555555
Q ss_pred CCCeeEecccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---------CCEEEEecCCCCcHHHHHHHH
Q 002941 774 HRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 774 ~p~v~~vrg~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---------g~~lr~~ppl~~t~eeid~~v 843 (863)
.|.+......| .++.+++.+.. ....+++.|.++||++.|+ .+.+|++. ...++|++++++
T Consensus 333 ~~g~~~~~p~gg~f~~~~~~~~~--------d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~-~~~~~e~l~~a~ 403 (420)
T d1vp4a_ 333 IPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSF-CLPPDEKIVEGI 403 (420)
T ss_dssp STTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEEC-SSSCHHHHHHHH
T ss_pred CCCcEEecCCceEEEEEECCCCC--------CHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEe-CcCCHHHHHHHH
Confidence 56665555555 56777775421 1234667889999999874 15788863 246889999999
Q ss_pred HHHHHHHHHHHH
Q 002941 844 LKLYQRLEEFDK 855 (863)
Q Consensus 844 ~~L~~~l~~l~~ 855 (863)
++|.+++++..+
T Consensus 404 ~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 404 KRLREVVLEYGK 415 (420)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH
Confidence 999999988764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.48 E-value=2.2e-12 Score=142.64 Aligned_cols=347 Identities=10% Similarity=-0.008 Sum_probs=199.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
..|++..|--+. ..+...+.+.+|+.++++...+ +....+..+....+++.+.+..+.. ..+.++++++++++...+
T Consensus 31 ~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~ 109 (395)
T d1xi9a_ 31 KVIRLNIGDPVK-FDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLI 109 (395)
T ss_dssp CCEECCCCCGGG-TTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCCCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhh
Confidence 677776543111 1222467899999999876322 2112223344556777777655432 135799999999998887
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++... . .| .+|++..-+|++....+...+.
T Consensus 110 ~~~~~-----~----~G------------d~vlv~~P~y~~~~~~~~~~g~----------------------------- 139 (395)
T d1xi9a_ 110 FGALL-----D----PG------------DEILVPGPSYPPYTGLVKFYGG----------------------------- 139 (395)
T ss_dssp HHHHC-----C----TT------------CEEEEEESCCHHHHHHHHHTTC-----------------------------
T ss_pred hhhhc-----C----CC------------CEEEEcCCccccchhhhhhcCC-----------------------------
Confidence 76552 1 12 5799999999875433322211
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
..+.+|.... +.|. -| .+.+++.+. +...+.+++.| ++..|.+
T Consensus 140 --~~v~v~~~~~---------------~~~~--~d--------~~~~~~~~~-------~~~~~v~l~~P--~NPTG~~- 182 (395)
T d1xi9a_ 140 --KPVEYRTIEE---------------EDWQ--PD--------IDDIRKKIT-------DRTKAIAVINP--NNPTGAL- 182 (395)
T ss_dssp --EEEEEEEEGG---------------GTSE--EC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred --EEEEEecccc---------------cccc--ch--------HHHHHHhhc-------ccccEEEecCC--CCCccch-
Confidence 0111111000 0000 11 123333332 34456778888 7899954
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCCCceeeecc--HHHHHhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT--NAVFDSF 711 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~--~~i~~~l 711 (863)
.+.+.+++|.++|++||+++|.||++..+...+.........-...++ +|||.++ .| +.+|++++. ...+..+
T Consensus 183 ~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~ 261 (395)
T d1xi9a_ 183 YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEV 261 (395)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHH
T ss_pred hhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccch-hhcEeeEecCHHHHHHHH
Confidence 578889999999999999999999997664434333322222223344 6899887 57 899986642 2221111
Q ss_pred hcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEE
Q 002941 712 VGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIE 790 (863)
Q Consensus 712 ~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~ie 790 (863)
... .......+...+.++..++.++++- .+++++++++..+..++.+ .+.+.+.+.+....+. |.++.++
T Consensus 262 ~~~---~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~L~~~~~~~~~~p~gg~~~~~~ 332 (395)
T d1xi9a_ 262 REA---IDRLARIRLCPNTPAQFAAIAGLTG--PMDYLKEYMKKLKERRDYI----YKRLNEIPGISTTKPQGAFYIFPK 332 (395)
T ss_dssp HHH---HHHHHHHTCCSCSHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHH----HHHHHTSTTEECCCCCBSSEECCE
T ss_pred HHH---HHHhhcCCCCcCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHH----HHHHHhCCCceecCCCeeEEEeEE
Confidence 110 0001122344455566666666552 3345555555544444443 3445566665544444 5666777
Q ss_pred EccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 791 LQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 791 l~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
+...... ...+++..++ ++||++.|+ .+.+|+. ++.++|++++++++|.+++++
T Consensus 333 l~~~~~~------~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 333 IEVGPWK------NDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp ECSCSCS------SHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC------CHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhc
Confidence 7542100 1334555544 679999873 2568885 467889999999999988764
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.45 E-value=8.2e-13 Score=143.09 Aligned_cols=302 Identities=12% Similarity=0.063 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCcccc
Q 002941 444 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA 523 (863)
Q Consensus 444 ~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~ga 523 (863)
.+..+.++|+++++ .+.++|++||++|+..|+.... ++ ...||+-..+|+.. ..+
T Consensus 48 l~~~~~~~~A~~~g---~e~~~~t~g~t~a~~~~~~al~-----------~~----------gd~Vi~~~~~h~s~-~~~ 102 (364)
T d2e7ja1 48 IHDFIHNQLPKFLG---CDVARVTNGAREAKFAVMHSLA-----------KK----------DAWVVMDENCHYSS-YVA 102 (364)
T ss_dssp HHHHHHTHHHHHTT---SSEEEEESSHHHHHHHHHHHHC-----------CT----------TCEEEEETTCCHHH-HHH
T ss_pred HHHHHHHHHHHHhC---cCEEEEECcHHHHHHHHHHHHh-----------CC----------CcEEEeeccccccc-chH
Confidence 46778999999998 5789999999999999987541 11 14677766655443 222
Q ss_pred ceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHH
Q 002941 524 MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSY 603 (863)
Q Consensus 524 ls~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 603 (863)
+...|.. +..++..+.. .+ .-| .+.
T Consensus 103 ~~~~g~~----------------------------v~~v~~~~~~-----------------~~--~i~--------~~~ 127 (364)
T d2e7ja1 103 AERAGLN----------------------------IALVPKTDYP-----------------DY--AIT--------PEN 127 (364)
T ss_dssp HHHTTCE----------------------------EEEECCCCTT-----------------TC--CCC--------HHH
T ss_pred HHhccce----------------------------EEEeeecccc-----------------cc--ccC--------HHH
Confidence 2221110 0111111000 00 011 244
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCc
Q 002941 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD 683 (863)
Q Consensus 604 le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD 683 (863)
+++.+++ ..+...+..|+++-+ .++.|.+.+ +++|.++|++||+++|+||+| ++|..+. ....+| .|
T Consensus 128 l~~~i~~---~~k~~~~~lv~i~~~-~n~tG~~~~----l~~I~~ia~~~~i~livD~a~-~~g~~~~--~~~~~g--~D 194 (364)
T d2e7ja1 128 FAQTIEE---TKKRGEVVLALITYP-DGNYGNLPD----VKKIAKVCSEYDVPLLVNGAY-AIGRMPV--SLKEIG--AD 194 (364)
T ss_dssp HHHHHHH---HTTTSCEEEEEEESS-CTTTCCCCC----HHHHHHHHHTTTCCEEEECTT-TBTTBCC--CHHHHT--CS
T ss_pred HHhhhhh---hcccCCceEEEeecC-CCCCceeec----chhheeccccccchhhccccc-hhhhhhh--cccccc--cc
Confidence 5566654 223456777777775 788898876 899999999999999999999 5654432 222233 68
Q ss_pred EEEec--cccCCCCCCceeeeccHHHHHhhhcCCccc----eeecccCCCccHHHHHHHHHHHHHhcCh-hhHHhHHHHH
Q 002941 684 IACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLK----ALLHGHSYSAHALGCAAAAKSIKWFKDP-QTNHNIIPER 756 (863)
Q Consensus 684 ivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~----~~~~~~T~~~~pla~AAalAaL~~l~~~-~l~~~l~~~~ 756 (863)
++++| |.++++ -.+|++++++++.+.+....... ..+.+.+..+. ...+..++++.+.+. +...+..++.
T Consensus 195 ~~~~S~~K~~~~~-g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 271 (364)
T d2e7ja1 195 FIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGA--TIITLMASFPHVRERIKRWDEEVEKA 271 (364)
T ss_dssp EEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSH--HHHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred eeeeccccccCCC-CCEEEEEECHHHHHHHHhhccccCcccccccccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 999865 35788999988877654321100 00111222222 233344555544221 1111222233
Q ss_pred HHHHHHHHHHHHHHHhcCCCe--e-EecccceEEEEEEccC-C-cCCCCchHHHHHHHHHHHHCCcEEEecC--CEEEEe
Q 002941 757 RILRELWDLELIQQISSHRTV--Q-RVVALGTLCAIELQAA-G-CNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLM 829 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v--~-~vrg~Gl~~~iel~~~-~-~~~~~~~~~~~~l~~~l~e~GV~~~p~g--~~lr~~ 829 (863)
+++.+ . +.+.+.. . ...... +..+..... . ... .......+...+.++|++....| ..+++.
T Consensus 272 ~~~~~----~----l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ 340 (364)
T d2e7ja1 272 RRFAA----E----MEKLGIKQLGDNPHNHD-LMFFHAEVLYEISKK--AKGGRFFLYRELKSRKIHGIKPGLTRYFKLS 340 (364)
T ss_dssp HHHHH----H----HHHTTCEEESSSSCCSS-EEEEECHHHHHHHHH--SSSGGGHHHHHHHHTTEECSCTTCCSEEEEE
T ss_pred HHHHH----H----HHHcCCeecCCCCCCcc-eEEEeccchHHHHHH--hhccchHHHHHHHhcCCceecCCCcceEEEe
Confidence 33332 2 2222211 0 011111 111221110 0 000 00011234556677787654333 445554
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.+|+|+||+++++|++++++.
T Consensus 341 -~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 341 -TYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -ccCCCHHHHHHHHHHHHHHHHHh
Confidence 66789999999999999988763
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=5e-12 Score=138.94 Aligned_cols=337 Identities=13% Similarity=0.082 Sum_probs=197.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
.++|+..|. -.+. -++.+.+|+.+.......+....+..+....+++.+.+..+.. ..+.++.+++++++...++
T Consensus 29 ~vi~l~~G~--p~~~--~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~ 104 (389)
T d2gb3a1 29 RIHHLNIGQ--PDLK--TPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSF 104 (389)
T ss_dssp EEEECSSCC--CCSC--CCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CEEECCCCC--CCCC--CCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccc
Confidence 566665432 2232 3577888887654433222222233345566777777654432 1367999999999998888
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+.... .| ..|+...-+|..........+.
T Consensus 105 ~~l~~---------~g------------d~V~i~~P~y~~~~~~~~~~g~------------------------------ 133 (389)
T d2gb3a1 105 AVIAN---------PG------------DEILVLEPFYANYNAFAKIAGV------------------------------ 133 (389)
T ss_dssp HHHCC---------TT------------CEEEEEESCCTHHHHHHHHHTC------------------------------
T ss_pred ccccc---------CC------------CeEEEeCCCCccccccccccCc------------------------------
Confidence 76521 12 5688888877654332222110
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+.+|.... .+. ..+ ..+.. ...+...+.++..| ++..|...
T Consensus 134 -~~~~~~~~~~----------------~~~-~~~-------------~~~~~---~~~~~~~~~~l~nP--~NPtG~~~- 176 (389)
T d2gb3a1 134 -KLIPVTRRME----------------EGF-AIP-------------QNLES---FINERTKGIVLSNP--CNPTGVVY- 176 (389)
T ss_dssp -EEEEEECCGG----------------GTS-CCC-------------TTGGG---GCCTTEEEEEEESS--CTTTCCCC-
T ss_pred -cccccccccc----------------ccc-chh-------------hhhhh---hcccCccEEEeCCC--Cccccccc-
Confidence 0011110000 000 000 00111 11233345566677 78998666
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-CCCCCceeeeccHH-HHHhhhcC
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNA-VFDSFVGD 714 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-gG~~Pigav~~~~~-i~~~l~~~ 714 (863)
+.+.+++|.++|++||+++|.||++..+...+.........-...++ .++|.++ .| +.+|+++++.+ +...+..
T Consensus 177 s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~G-lRiG~~~~~~~~i~~~~~~- 254 (389)
T d2gb3a1 177 GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACG-ARVGCLITRNEELISHAMK- 254 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHH-
T ss_pred hHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcc-cceeeeeccchhHHHHHhh-
Confidence 78899999999999999999999998886655543332222122233 4578776 46 89999988654 4444332
Q ss_pred CccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec-ccceEEEEEEcc
Q 002941 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQA 793 (863)
Q Consensus 715 ~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~ 793 (863)
.....++.+++...++.+.++. .+.+.+.+++..+..++.+ .+.+.+++.+..+. .-|.++.+++..
T Consensus 255 ------~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~----~~~L~~~~~~~~~~p~~g~~~~~~lp~ 322 (389)
T d2gb3a1 255 ------LAQGRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVETV----LKKLEEHGLKRFTKPSGAFYITAELPV 322 (389)
T ss_dssp ------HHHHSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHH----HHHHHHTTCCCBCCCSBSSEEEEECSS
T ss_pred ------hhhccccccccccccccccccc--cchhcccccccccccchhh----hhhhhhhccccccCCCceEEEEEeCCC
Confidence 1234455667777776666542 3445555655555555544 34455566544333 456777788754
Q ss_pred CCcCCCCchHHHHHHHHHHHH------CCcEEEec----------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLRE------DGVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e------~GV~~~p~----------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+ ..++++.|++ +||.+.|. .+.+|+. ++.+++++++++++|.++|+++
T Consensus 323 ~~---------~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 323 ED---------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp SC---------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred CC---------HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHHHh
Confidence 32 4567777765 36666653 1578886 5678999999999999988765
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.44 E-value=8.1e-12 Score=137.81 Aligned_cols=343 Identities=10% Similarity=-0.014 Sum_probs=189.0
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~AL 478 (863)
..+|+..|- -.+. ..|.|++|+.++++...+.. +.+..+....+++.+.+..+.. ..+.++.++++++|+..++
T Consensus 32 ~vi~l~~g~--pdf~--~p~~v~~al~~~~~~~~~~Y-~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~ 106 (394)
T d1c7na_ 32 EVVPLSVAD--MEFK--NPPELIEGLKKYLDETVLGY-TGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV 106 (394)
T ss_dssp TCCCCCSSS--CSSC--CCHHHHHHHHHHHHHCCCSS-BCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred CeEEccCCC--CCCC--CCHHHHHHHHHHHhCCCcCC-CCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhh
Confidence 556654332 2232 47999999999987632211 1122233444455544433321 1368999999999999998
Q ss_pred HHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCc
Q 002941 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (863)
Q Consensus 479 klA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (863)
+.... .| ..|+.....|.+........++
T Consensus 107 ~~~~~---------pg------------d~vi~~~p~~~~~~~~~~~~g~------------------------------ 135 (394)
T d1c7na_ 107 REFTK---------PG------------DGVIIITPVYYPFFMAIKNQER------------------------------ 135 (394)
T ss_dssp HHHCC---------TT------------CEEEECSSCCTHHHHHHHTTTC------------------------------
T ss_pred ccccc---------cc------------cccccccCcccchhhHHhhhhh------------------------------
Confidence 86521 12 5688888887665333222211
Q ss_pred eeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeC
Q 002941 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (863)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~p 638 (863)
..+.+|... .+ ..+ ..| .+.++.... .+...+.++..| ++..|. +.
T Consensus 136 -~~v~~~~~~-----------~~---~~~--~~d--------~~~~~~~~~------~~~~~~i~l~~P--~NPTG~-v~ 181 (394)
T d1c7na_ 136 -KIIECELLE-----------KD---GYY--TID--------FQKLEKLSK------DKNNKALLFCSP--HNPVGR-VW 181 (394)
T ss_dssp -EEEECCCEE-----------ET---TEE--ECC--------HHHHHHHHT------CTTEEEEEEESS--BTTTTB-CC
T ss_pred -ccccccccc-----------cc---ccc--cch--------hhhhhhhhc------cccceEEEeccc--ccccce-ec
Confidence 011111000 00 000 011 122333332 233446677777 789995 45
Q ss_pred CHHHHHHHHHHHHHcCCeEEEecccccccccCCcch---hhhcCCCCcEE---EeccccC-CCCCCceeeecc-HHHHHh
Q 002941 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT---ADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT-NAVFDS 710 (863)
Q Consensus 639 p~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a---~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~-~~i~~~ 710 (863)
+.+.+++|.++|++||+++|.||++..|-..+.... ....+.....+ .+||.++ .| +.+|++++. +.+.+.
T Consensus 182 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~R~g~~~~~~~~i~~~ 260 (394)
T d1c7na_ 182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRER 260 (394)
T ss_dssp CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHH
T ss_pred cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccc-cccccccccChhhhhh
Confidence 788899999999999999999999987743333221 11111112233 4689776 56 788877765 556565
Q ss_pred hhcCCccceeecccC-CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEE
Q 002941 711 FVGDSKLKALLHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCA 788 (863)
Q Consensus 711 l~~~~~~~~~~~~~T-~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~ 788 (863)
+... ....+ ........+++...... .+++.+.+.+..++.++.+.+.+.. ..+.+......| .++.
T Consensus 261 ~~~~------~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~p~g~~~~~ 329 (394)
T d1c7na_ 261 FTKS------RDATSGMPFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRIVKDFFEV---NHPEIKAPLIEGTYLQW 329 (394)
T ss_dssp HHHH------HHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHH---HCTTSBCCCCSBSSEEE
T ss_pred hhhh------hhhccccccccccchhhhhhhcc--hhhhhcccccccchhhhhhhhhhhc---cccceeecCCCceeEEE
Confidence 5421 11111 11223333333333332 2334444444444444433322211 123343344444 5566
Q ss_pred EEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 789 IELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 789 iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+++.... ....++++.|+++ ||++.|+ .+.+|++ +..++|+|++++++|.++++++
T Consensus 330 ~~~~~~~-------~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 330 IDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALKDL 393 (394)
T ss_dssp EECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCC-------CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHHhc
Confidence 7775421 0155678888765 9999873 2678886 4678889999999999998876
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=2.1e-11 Score=131.50 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=126.0
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GG 694 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG 694 (863)
.-..++..| ++..|.+.+ . +.|.++ .++++++|+||++..+......... ...+.++ ++||.++ .|
T Consensus 139 ~~~l~l~nP--~NPtG~~~s-~---~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~---~~~~~~i~~~S~SK~~~~~G 208 (334)
T d2f8ja1 139 GDVVFIPNP--NNPTGHVFE-R---EEIERI-LKTGAFVALDEAYYEFHGESYVDFL---KKYENLAVIRTFSKAFSLAA 208 (334)
T ss_dssp TEEEEEESS--CTTTCCCCC-H---HHHHHH-HTTTCEEEEECTTGGGTCCCCGGGG---GTCSSEEEEEESTTTSSCTT
T ss_pred ceEEEeccc--ccccceeec-H---HHhhcc-ccceeEEeecccchhhccccccccc---ccCceEEEEecCccccchhh
Confidence 345677889 688887775 3 334444 5689999999998655322222211 1223333 6799877 67
Q ss_pred CCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 002941 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (863)
Q Consensus 695 ~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~ 774 (863)
+.+|++++++++++.+... ..++..+..+.+++.+.++ ..++.+...+..+.-++.+.+. ++++
T Consensus 209 -~R~G~~~~~~~~i~~l~~~--------~~~~~~s~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~----L~~~ 272 (334)
T d2f8ja1 209 -QRVGYVVASEKFIDAYNRV--------RLPFNVSYVSQMFAKVALD---HREIFEERTKFIVEERERMKSA----LREM 272 (334)
T ss_dssp -TCEEEEEECHHHHHHHHHH--------SCTTCSCHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred -hhhhhcccchHHHHHHHHh--------hcccccchhhhhhcccccc---cccchhhHHHHHHHHHHHHHHH----HHHC
Confidence 8999999999999988641 1334556677777777665 3444444444444444444333 3344
Q ss_pred CCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 775 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 775 p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
+ +.-+.+.|.++.+.+... .+.++.+.|.++||+++++.+.+|++ .-++||+++++++|++
T Consensus 273 g-~~~~~~~g~f~~~~~~~~---------~~~~~~~~L~~~GI~vr~~~~~vRis---~g~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 273 G-YRITDSRGNFVFVFMEKE---------EKERLLEHLRTKNVAVRSFREGVRIT---IGKREENDMILRELEV 333 (334)
T ss_dssp T-CEECCCCSSEEEEECCHH---------HHHHHHHHHHHTTEECEEETTEEEEE---CCCHHHHHHHHHHHHH
T ss_pred C-CeECCCCceEEEEECCCC---------CHHHHHHHHHHCCCEECCCCCeEEEE---cCCHHHHHHHHHHHhc
Confidence 3 233456777776666433 36788999999999999988999997 3578888888888764
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.42 E-value=4.2e-11 Score=132.98 Aligned_cols=342 Identities=12% Similarity=0.020 Sum_probs=197.2
Q ss_pred CcHHHHHHHHHHHHhccc----ccCCCCCChHHHHHHHHHHhhcCCC-C-CCeEEEeCChhhHHHHHHHHHHHHHHhhcc
Q 002941 417 LQIELARDMGYTAARFGH----VMFPENVYEPALECAELLLQGVGKG-W-ASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~----~~~~~~~~~~~~eLae~L~~~~p~~-~-~~~v~f~~SGSeAvE~ALklA~r~~~~~~G 490 (863)
..+.|.+|+.+++..... +....+..+....+|+.+.+..+.. . .++++.++++++|+..+++...
T Consensus 40 ~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~-------- 111 (418)
T d2r5ea1 40 APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-------- 111 (418)
T ss_dssp CCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc--------
Confidence 357899999998865321 1112223345666888888765532 1 3579999999999999988662
Q ss_pred ccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhh
Q 002941 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (863)
Q Consensus 491 ~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (863)
+. ...|++.+-+|.+........++.. ..++.....
T Consensus 112 ---~~----------gd~vlv~~P~y~~~~~~~~~~g~~~-----------------------------~~v~~~~~~-- 147 (418)
T d2r5ea1 112 ---DE----------GDEVIIIEPFFDCYEPMVKAAGGIP-----------------------------RFIPLKPNK-- 147 (418)
T ss_dssp ---CT----------TCEEEEEESCCTTHHHHHHHTTCEE-----------------------------EEEECEESC--
T ss_pred ---cc----------ccceeccccccchhhHHHHHcCCeE-----------------------------EEEEecccc--
Confidence 11 2678998888887654433322110 001100000
Q ss_pred hhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHH
Q 002941 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (863)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc 650 (863)
...... ...+ ..+ .+.++... .....+.+|..| ++..|.+. +++.+++|.++|
T Consensus 148 -----~~~~~~--~~~~--~~~--------~~~~~~~~-------~~~~~~~~i~~p--~NPtG~~~-s~e~~~~l~~~a 200 (418)
T d2r5ea1 148 -----TGGTIS--SADW--VLD--------NNELEALF-------NEKTKMIIINTP--HNPLGKVM-DRAELEVVANLC 200 (418)
T ss_dssp -----CSSCEE--GGGE--ECC--------HHHHHHHC-------CTTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHH
T ss_pred -----cccchh--hhhh--hhh--------HHHHhhhh-------hccccceecCCc--Cccccccc-cHHHHHHHhhhh
Confidence 000000 0000 011 11222222 223334455555 88888654 788899999999
Q ss_pred HHcCCeEEEecccccccccCCc--chhhhcCCCCcEE---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeeccc
Q 002941 651 QNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGH 724 (863)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~ 724 (863)
++||+++|.||++..|...+.. ......+..+.++ .+||.++ .| +.+|++++++++++.+... ....
T Consensus 201 ~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~~------~~~~ 273 (418)
T d2r5ea1 201 KKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMV------HQNC 273 (418)
T ss_dssp HHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHHH------HTTT
T ss_pred hcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCC-cccccccccchhhhhhhhc------cccc
Confidence 9999999999999766433321 1122223333444 6799987 77 8999999999999887641 1223
Q ss_pred CCCccHHHHHHHHHHHHH----hc-ChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCC-
Q 002941 725 SYSAHALGCAAAAKSIKW----FK-DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA- 798 (863)
Q Consensus 725 T~~~~pla~AAalAaL~~----l~-~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~- 798 (863)
+++.+.....++.+.+.- ++ .++++.++++.-+..++.+. +.+++.+.-.....-|.++.+++.......
T Consensus 274 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~----~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~ 349 (418)
T d2r5ea1 274 VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMA----SFLAEVGMNPTVPQGGYFMVADWSSLDSKVD 349 (418)
T ss_dssp TCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH----HHHHHTTCEEEECSBSSEEEEECGGGSTTCC
T ss_pred ccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHH----hhHhhcCCcccCCCceeEEEEEccccccccc
Confidence 455555555444444432 11 13455555555555555443 334444432223344677778886422111
Q ss_pred ---CCchHHHHHHHHHHHH-CCcEEEec------------CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 799 ---GYGSLYAASLLKKLRE-DGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 799 ---~~~~~~~~~l~~~l~e-~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
........++++.|++ +||.+.|+ .+.+|++ ++.++|++++++++|++.+
T Consensus 350 ~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis--~~~~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 350 LTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYC--FFKKDENLQKAAEILRKWK 415 (418)
T ss_dssp GGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred chhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 1111235677887764 59999874 1568886 4568899999999998865
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=3.4e-11 Score=131.44 Aligned_cols=332 Identities=13% Similarity=0.066 Sum_probs=188.1
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCChHHHHHHHHHHhhcCCC-CCCeEEEeCChhhHHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~p~~-~~~~v~f~~SGSeAvE~A 477 (863)
..||+..|. ..+. -++.+.+++.+.+....+ +....+..+....+++.+....+.. ..+.++++++|++|+..+
T Consensus 29 ~vI~l~~G~--p~~~--~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~ 104 (375)
T d1o4sa_ 29 DVINLTAGE--PDFP--TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 104 (375)
T ss_dssp CCEECCCSS--CSSC--CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCcC--CCCC--CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHH
Confidence 567766543 2333 468999999998865322 1112233455556677766544322 146799999999999888
Q ss_pred HHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccC
Q 002941 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (863)
Q Consensus 478 LklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (863)
++.... .| ..|+...-+|.......... +..
T Consensus 105 ~~~l~~---------~g------------d~vlv~~P~y~~~~~~~~~~-~~~--------------------------- 135 (375)
T d1o4sa_ 105 FMALLD---------PG------------DEVIVFSPVWVSYIPQIILA-GGT--------------------------- 135 (375)
T ss_dssp HHHHCC---------TT------------CEEEEEESCCTTHHHHHHHT-TCE---------------------------
T ss_pred HHHHhC---------CC------------CEEEEccCccccchhhhhcc-ccc---------------------------
Confidence 876521 12 46888777776543222111 100
Q ss_pred ceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcee
Q 002941 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (863)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~ 637 (863)
...++..... ....+ .+.++.. ........++..| ++..|...
T Consensus 136 -~~~~~~~~~~-------------------~~~~~--------~~~~~~~-------~~~~~~~~~l~nP--~NPTG~~~ 178 (375)
T d1o4sa_ 136 -VNVVETFMSK-------------------NFQPS--------LEEVEGL-------LVGKTKAVLINSP--NNPTGVVY 178 (375)
T ss_dssp -EEEEECCGGG-------------------TTCCC--------HHHHHHT-------CCTTEEEEEEESS--CTTTCCCC
T ss_pred -cccccccccc-------------------cccch--------hHHHHHh-------hccCccEEEEeCC--CCCccCCC
Confidence 0000111000 00001 0112211 1234556778888 79999665
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-hhhcCCCCcE---EEeccccC-CCCCCceeeeccHHHHHhhh
Q 002941 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDI---ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 638 pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDi---vt~sKgLg-gG~~Pigav~~~~~i~~~l~ 712 (863)
+.+.+++|.++|++|+++||.||++..+...+.... ....+....+ -++||.++ .| +.+|++++++++++.+.
T Consensus 179 -s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~ 256 (375)
T d1o4sa_ 179 -RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVS 256 (375)
T ss_dssp -CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred -CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCc-cccccccccccchhhhh
Confidence 688899999999999999999999975533333222 2222222333 36899998 78 89999999999988765
Q ss_pred cCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEEEE
Q 002941 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIEL 791 (863)
Q Consensus 713 ~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel 791 (863)
.. ....+.........++.+.++ +. .....+.-+..++.+. +.+.+.. +..+... |.++.+++
T Consensus 257 ~~------~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~r~~~~~----~~l~~~g-~~~~~p~gg~f~~~~~ 320 (375)
T d1o4sa_ 257 KI------QSHTTSCINTVAQYAALKALE---VD--NSYMVQTFKERKNFVV----ERLKKMG-VKFVEPEGAFYLFFKV 320 (375)
T ss_dssp HH------HHHHTCSCCHHHHHHHHHHTT---CC--CHHHHHHHHHHHHHHH----HHHHHTT-CCCCCCSBSSEEEEEC
T ss_pred hh------hccccccccccchhhhhhhcc---cc--hhhhHHHHHHHHHHHH----HHHHhcC-ceEecCCccEEEEEEC
Confidence 31 122223333333333333222 21 1122222222233222 2233332 2223344 56677777
Q ss_pred ccCCcCCCCchHHHHHHHHH-HHHCCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKK-LREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~-l~e~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
..+ ..+++.. +.++||++.|+ .+.+|++ +..++|++++++++|+++++
T Consensus 321 ~~~----------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 321 RGD----------DVKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp SSC----------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred CCC----------HHHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHhc
Confidence 543 2345555 44679999984 2678886 45788999999999988874
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.38 E-value=9.2e-11 Score=129.80 Aligned_cols=331 Identities=11% Similarity=0.045 Sum_probs=187.8
Q ss_pred cHHHHHHHHHHHHhcccc--cCCCCCChHHHHHHHHHHhhcCCC-------CCCeEEEeCChhhHHHHHHHHHHHHHHhh
Q 002941 418 QIELARDMGYTAARFGHV--MFPENVYEPALECAELLLQGVGKG-------WASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (863)
Q Consensus 418 ~p~V~~Ai~~q~~~~~~~--~~~~~~~~~~~eLae~L~~~~p~~-------~~~~v~f~~SGSeAvE~ALklA~r~~~~~ 488 (863)
.+.+++++++.++..... ....+..+....+|+.+.+..+.. ..+.++.++++++|+..+++...+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~----- 123 (412)
T d1bw0a_ 49 SAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD----- 123 (412)
T ss_dssp CHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC-----
T ss_pred cHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhc-----
Confidence 467788888777643221 111223344555677776543210 135899999999999999876521
Q ss_pred ccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchh
Q 002941 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (863)
Q Consensus 489 ~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~ 568 (863)
.| .+|++.+-+|++....+...+. ..+.+|-..
T Consensus 124 ----~G------------d~Vlv~~P~y~~~~~~~~~~G~-------------------------------~~~~v~~~~ 156 (412)
T d1bw0a_ 124 ----AG------------DYALVPQPGFPHYETVCKAYGI-------------------------------GMHFYNCRP 156 (412)
T ss_dssp ----TT------------CEEEEEESCCTHHHHHHHHTTC-------------------------------EEEEEEEEG
T ss_pred ----cc------------cceeeeeccchhhhhhhhccCc-------------------------------ccccccccc
Confidence 12 5799999999876433322111 001111000
Q ss_pred hhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHH
Q 002941 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (863)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lre 648 (863)
. ..| ..+ .+.+++.. .....+.++..| ++..|.+. +.+.+++|.+
T Consensus 157 ~---------------~~~--~~~--------~~~l~~~~-------~~~~~~~~l~np--~NPtG~~~-~~~~~~~i~~ 201 (412)
T d1bw0a_ 157 E---------------NDW--EAD--------LDEIRRLK-------DDKTKLLIVTNP--SNPCGSNF-SRKHVEDIVR 201 (412)
T ss_dssp G---------------GTT--EEC--------HHHHHHHC-------CTTEEEEEEESS--CTTTCCCC-CHHHHHHHHH
T ss_pred c---------------ccc--chh--------hHHHHhhh-------hccccccccccc--cccccccc-hhhhcccccc
Confidence 0 000 011 12333333 234556777788 78888555 7899999999
Q ss_pred HHHHcCCeEEEecccccccccCCcc-hh-hh---cCCCCcEE---EeccccC-CCCCCceeeeccHH------HHHhhhc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVET-TA-DL---LGCVPDIA---CYGKLLT-GGVIPLAATLATNA------VFDSFVG 713 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~~-a~-e~---~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~------i~~~l~~ 713 (863)
+|++|++++|.||++..|...|... .. .. +......+ .+||.++ .| +.+|++++.++ ++.....
T Consensus 202 ~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G-~RvG~~~~~~~~~~~~~~~~~~~~ 280 (412)
T d1bw0a_ 202 LAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKR 280 (412)
T ss_dssp HHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHH
T ss_pred ccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCC-CCcccccccchhhcchhhhhhhcc
Confidence 9999999999999999886655421 11 11 11122233 4799887 56 89999987643 2222211
Q ss_pred CCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-eEEEEEEc
Q 002941 714 DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALG-TLCAIELQ 792 (863)
Q Consensus 714 ~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~G-l~~~iel~ 792 (863)
....+.+.++..++++.+.+.. ..+++...+.+..+..++. +.+.+.+.+.+......| .++.+.+.
T Consensus 281 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~----~~~~l~~~~g~~~~~p~gg~~l~~~~~ 348 (412)
T d1bw0a_ 281 -------VGMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESAMY----LYNHIGECIGLAPTMPRGAMYLMSRID 348 (412)
T ss_dssp -------HHHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHH----HHHHHTTSTTEEECCCCBTTEEEEEEC
T ss_pred -------ccccccCCchhhhhhccccccc-ccccccccccchhHHHHHH----HHHHHHHhcCceecCCCCceEEEEeCC
Confidence 1222333444444444443321 2233444444444444443 344455666665555554 55556664
Q ss_pred cCCcCCCCchHHHHHHHHHHHH-CCcEEEec-----CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 793 AAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 793 ~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-----g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
...... . ....++++.|++ +||++.|+ .+.+|++ ++.+++++++++++|++++++.
T Consensus 349 ~~~~~~-~--~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 349 LEKYRD-I--KTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp GGGBSS-C--CSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCC-C--CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHHhc
Confidence 321000 0 124567777765 69999984 2678885 5678899999999998887653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.37 E-value=9e-11 Score=130.95 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=127.5
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch-h-hhc---CC------CCcEE
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A-DLL---GC------VPDIA 685 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a-~-e~~---gv------~PDiv 685 (863)
....+.++..| ++..|.. .+++-+++|.++|++||+++|.||++..+-..+..+. . +.. .. ...++
T Consensus 188 ~~~~~i~~~nP--~NPtG~~-~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi 264 (431)
T d1m7ya_ 188 LRVKGVLVTNP--SNPLGTT-MTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVH 264 (431)
T ss_dssp CCEEEEEEESS--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred CcceEEEecCc--ccccccc-ccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEE
Confidence 33455666778 7888855 5788899999999999999999999987744443221 1 110 11 11233
Q ss_pred ---EeccccC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc-ChhhHHhHHHHHHHHH
Q 002941 686 ---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILR 760 (863)
Q Consensus 686 ---t~sKgLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~-~~~l~~~l~~~~~~l~ 760 (863)
++||.++ .| +.+|++++++++....... .......++...+++.+.+.... ..++.++.+...+..+
T Consensus 265 ~~~s~SK~~~~~G-~RiG~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~ 336 (431)
T d1m7ya_ 265 VVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK-------MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQ 336 (431)
T ss_dssp EEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH-------HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcccccCCC-CccceeccchhhhHHHHHH-------Hhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhh
Confidence 6799997 67 8999999988766543321 11222223333333333332111 1122333333333333
Q ss_pred HHHHHHHHHHHhcCCCeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-------CCEEEEecC
Q 002941 761 ELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCG 831 (863)
Q Consensus 761 ~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-------g~~lr~~pp 831 (863)
+. +.+.+++. .+..+.+. |+++.+++...-.. .......+++++|+ ++||++.|+ .+.+|++.
T Consensus 337 ~~----l~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~--~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~- 408 (431)
T d1m7ya_ 337 KK----LVSGLQKS-GISCLNGNAGLFCWVDMRHLLRS--NTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCF- 408 (431)
T ss_dssp HH----HHHHHHTT-TCEECCCCSSSEEEEECGGGSSS--SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEEC-
T ss_pred hh----hhhhhhcC-CcEEecCCceeEEEEECcccccc--CcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEe-
Confidence 32 33444443 34444444 67777888643111 11123456777776 569999883 26788853
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH
Q 002941 832 PCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 832 l~~t~eeid~~v~~L~~~l~~l 853 (863)
...+++++++++++|++++++.
T Consensus 409 a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 409 ANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHh
Confidence 2357788999999999988763
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.9e-10 Score=127.27 Aligned_cols=331 Identities=11% Similarity=-0.008 Sum_probs=203.6
Q ss_pred CcHHHHHHHHHHHHhcccccCCCCCC-------hHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhc
Q 002941 417 LQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (863)
Q Consensus 417 ~~p~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~ 489 (863)
-.+.|.+++.+.++.. +.+.....+ +...+..++++++++....+.++|+++.++|+..+++.... ....
T Consensus 34 ~p~~v~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~-~~~~- 110 (405)
T d1jf9a_ 34 KPSQVIDAEAEFYRHG-YAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGN-SNVR- 110 (405)
T ss_dssp CCHHHHHHHHHHHHHT-CCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHH-HHCC-
T ss_pred CCHHHHHHHHHHHHhc-cCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccc-cccC-
Confidence 4688999999887663 221111122 23445566778887732236899999999999988876421 1111
Q ss_pred cccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhh
Q 002941 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (863)
Q Consensus 490 G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (863)
+ ...||+....||........+...... .+..++.....
T Consensus 111 ---~------------g~~il~~~~e~~s~~~~~~~~a~~~g~-------------------------~v~~~~~~~~g- 149 (405)
T d1jf9a_ 111 ---A------------GDNIIISQMEHHANIVPWQMLCARVGA-------------------------ELRVIPLNPDG- 149 (405)
T ss_dssp ---T------------TCEEEEETTCCGGGTHHHHHHHHHHTC-------------------------EEEEECBCTTS-
T ss_pred ---C------------CCEEEEEeCcccchHHHHHHHHHHcCc-------------------------EEEEECCCCCC-
Confidence 1 267999999988865544333110000 01111111000
Q ss_pred hhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHH
Q 002941 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (863)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrel 649 (863)
.-| .+.++..+ .+++..|.+.=+ .+..|.+.| ++++.++
T Consensus 150 --------------------~~~--------~~~~~~~i--------~~~t~lv~~~~v-~~~tG~~~p----i~~i~~~ 188 (405)
T d1jf9a_ 150 --------------------TLQ--------LETLPTLF--------DEKTRLLAITHV-SNVLGTENP----LAEMITL 188 (405)
T ss_dssp --------------------CBC--------GGGHHHHC--------CTTEEEEEEESB-CTTTCCBCC----HHHHHHH
T ss_pred --------------------cCC--------HHHHHHhc--------cCCcEEEEEecC-CCcccccCc----hHHhhhH
Confidence 001 11233333 357888888887 888999998 9999999
Q ss_pred HHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccc------eee
Q 002941 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLK------ALL 721 (863)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~------~~~ 721 (863)
|+++|+++++|-+|+ .|.. ..-.+.+ .+|++++| |.+| + --+|++.+++++.+.+....... .+.
T Consensus 189 ~~~~g~~~~vD~~q~-~g~~--~id~~~~--~~D~~~~s~hK~~G-p-~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 261 (405)
T d1jf9a_ 189 AHQHGAKVLVDGAQA-VMHH--PVDVQAL--DCDFYVFSGHKLYG-P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLS 261 (405)
T ss_dssp HHHTTCEEEEECTTT-TTTS--CCCHHHH--TCSEEEEEGGGTTS-C-SSCEEEEECHHHHTTCCCSSCSSSSEEECCTT
T ss_pred HHHcCCeeeccccee-cccc--ccchhhc--CCceeecccccccc-C-CCceeeeechhhhcccCcccccccccCccccc
Confidence 999999999999984 4322 2223333 47998875 8863 3 33788899999877543211000 000
Q ss_pred cc----------cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee--EecccceEEEE
Q 002941 722 HG----------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ--RVVALGTLCAI 789 (863)
Q Consensus 722 ~~----------~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~--~vrg~Gl~~~i 789 (863)
.. ..-+.|..++++..++++++++.+ .+++.+....+.+.+ .+.+...+.+. ....++.++.+
T Consensus 262 ~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~L~~~~----~~~l~~~~~~~~~~~~~r~~ivsf 336 (405)
T d1jf9a_ 262 EGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQNLMHYA----LSQLESVPDLTLYGPQNRLGVIAF 336 (405)
T ss_dssp TCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHH----HHHHTTSTTEEEESCTTCCSEEEE
T ss_pred cccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH----HhhhhcCCcccccCCcCcCcEEEE
Confidence 00 011347788888889999875433 345555555555433 34455555432 23345567777
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
.+.... ...+...|.++||.++.. .+.+|+++...+|++|||.++++|+++++-+
T Consensus 337 ~~~~~~---------~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 337 NLGKHH---------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp EETTCC---------HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCC---------HHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 775432 456777888999998742 2679999999999999999999998877643
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.6e-11 Score=134.77 Aligned_cols=355 Identities=12% Similarity=0.064 Sum_probs=199.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc--c-ccCCCCCChHHHHHHHHHHhhcCCCC--CCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--H-VMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~--~-~~~~~~~~~~~~eLae~L~~~~p~~~--~~~v~f~~SGSeAv 474 (863)
.+||+..|.- .+. ..+.|.+|+++++.... + +....+..+....+++.+.+..+... .+.|++++++++|.
T Consensus 26 dvI~l~~G~p--~~~--~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al 101 (418)
T d1w7la_ 26 DVVNLGQGFP--DFP--PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 101 (418)
T ss_dssp CCEECCCCSC--SSC--CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCEECCCCCC--CCC--CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHH
Confidence 4677665542 222 35778899988876421 1 11122333455667777776655431 13599999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
..+++.... .| ..|++....|+.....+...+....+. + ..+....
T Consensus 102 ~~~~~~l~~---------~g------------~~vlv~~p~~~~y~~~~~~~g~~~v~~-----~--------~~~~~~~ 147 (418)
T d1w7la_ 102 FTAFQALVD---------EG------------DEVIIIEPFFDCYEPMTMMAGGRPVFV-----S--------LKPGPIQ 147 (418)
T ss_dssp HHHHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTCEEEEE-----E--------CEECC--
T ss_pred HHHHHhhcc---------CC------------ceeeccccccchhHHHHHHcCCEeecc-----c--------ccccccc
Confidence 988876621 12 578888888877654333222110000 0 0000000
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
....+. +.-+ ..| ...+... ..+...+.++..| ++..|
T Consensus 148 ------~~~~~~-----------------~~~~--~~d--------~~~~~~~-------~~~~~~~i~~~~p--~NPtG 185 (418)
T d1w7la_ 148 ------NGELGS-----------------SSNW--QLD--------PMELAGK-------FTSRTKALVLNTP--NNPLG 185 (418)
T ss_dssp -------CCSEE-----------------GGGE--ECC--------HHHHHHH-------CCTTEEEEEEESS--CTTTC
T ss_pred ------cccccc-----------------ccCc--ccc--------hhhhhcc-------ccccccceeccCc--CCccc
Confidence 000000 0000 011 0111111 2344556666677 78888
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc-chh-hhcCCCCcEE---EeccccC-CCCCCceeeeccHHHH
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTA-DLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVF 708 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~-~a~-e~~gv~PDiv---t~sKgLg-gG~~Pigav~~~~~i~ 708 (863)
.. .+++.+++|.++|++|++++|.||++..|...+.. ... ...+..+..+ ++||.++ .| +++|+++++++++
T Consensus 186 ~~-~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~~ 263 (418)
T d1w7la_ 186 KV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIM 263 (418)
T ss_dssp CC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEECCHHHH
T ss_pred cc-ccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCC-Ccccccccchhhh
Confidence 55 47888999999999999999999999888655542 111 2223333333 6799876 57 8999999999998
Q ss_pred HhhhcCCccceeecccCCCccHHHHHHHHHHHHH---hcC--hhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-
Q 002941 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW---FKD--PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA- 782 (863)
Q Consensus 709 ~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~---l~~--~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg- 782 (863)
+.+.. +....+++.+.++..++.++|.. ..+ .++...+.+.-+..++.+ .+.+.+.+. ...+.
T Consensus 264 ~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l----~~~L~~~g~-~~~~P~ 332 (418)
T d1w7la_ 264 KHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM----IRSLQSVGL-KPLIPQ 332 (418)
T ss_dssp HHHHH------HHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHH----HHHHHTTTC-EEEECS
T ss_pred hhhcc------ccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhh----hhhhhhcCC-cccCCC
Confidence 88764 12234555666666666666543 211 233444444444444433 334455543 22333
Q ss_pred cceEEEEEEccCC-----cCCCCchHHHHHHHHHHH-HCCcEEEec------------CCEEEEecCCCCcHHHHHHHHH
Q 002941 783 LGTLCAIELQAAG-----CNAGYGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLL 844 (863)
Q Consensus 783 ~Gl~~~iel~~~~-----~~~~~~~~~~~~l~~~l~-e~GV~~~p~------------g~~lr~~ppl~~t~eeid~~v~ 844 (863)
-|.++.+++.... ...........++++.|+ ++||.+.|+ .+.+|++ ++.++++++++++
T Consensus 333 gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~~~~~~~l~~a~~ 410 (418)
T d1w7la_ 333 GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEATLQAMDE 410 (418)
T ss_dssp BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHHHHHHHH
T ss_pred ceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE--EcCCHHHHHHHHH
Confidence 3667778875411 000011123455666655 679999873 1579986 5678888999988
Q ss_pred HHHHH
Q 002941 845 KLYQR 849 (863)
Q Consensus 845 ~L~~~ 849 (863)
+|++.
T Consensus 411 rl~~~ 415 (418)
T d1w7la_ 411 KLRKW 415 (418)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.35 E-value=1.9e-11 Score=137.75 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=128.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccc-c-----CCcch-
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR-L-----GVETT- 674 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGR-t-----G~~~a- 674 (863)
+.+++.+.. ..++.++.+++|.. .+.+|..+.+.+++++++++|++||+.|++|+++. +|- . ...+.
T Consensus 161 ~~le~~I~~----~~~~~~~~i~~e~~-~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~-~~~a~~~~~~~~~~~~ 234 (456)
T d1c7ga_ 161 NKLATLIKE----KGAENIAYICLAVT-VNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC-VENAYFIKEQEAGYEN 234 (456)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHHHHHSTTCTT
T ss_pred HHHHHHhhh----cCCccceeEEeeec-ccccccceecHHHHHHHHHHHHHcCCEEEEEcchh-hcchhhhcccccccCC
Confidence 456666653 34567899999986 78877788999999999999999999999999985 211 0 00000
Q ss_pred -------hhhcCCCCcEEEe--ccccCCCCCCcee-eecc-HHHHHhhhcCCccceeecccCCCcc-HHHHHHHHHHHHH
Q 002941 675 -------ADLLGCVPDIACY--GKLLTGGVIPLAA-TLAT-NAVFDSFVGDSKLKALLHGHSYSAH-ALGCAAAAKSIKW 742 (863)
Q Consensus 675 -------~e~~gv~PDivt~--sKgLggG~~Piga-v~~~-~~i~~~l~~~~~~~~~~~~~T~~~~-pla~AAalAaL~~ 742 (863)
-+.+ -..|++++ +|.+++ |.|+ ++++ +++++.++.... ......++++. ...++++...+..
T Consensus 235 ~~i~~i~~~~~-~~ad~~s~s~~K~~~~---~~GG~i~~~~~~l~~~~r~~~~--~~~g~~~~g~~~~~~~~a~a~~l~e 308 (456)
T d1c7ga_ 235 VSIKDIVHEMF-SYADGCTMSGKKDCLV---NIGGFLCMNDEEMFSAAKELVV--VYEGMPSYGGLAGRDMEAMAIGLRE 308 (456)
T ss_dssp SCHHHHHHHHH-TTCSEEEEETTTTTCC---SSCEEEEESCHHHHHHHHHHHH--HHTCCTTTTTCCHHHHHHHHHHHHH
T ss_pred CChhhhccccc-cccccEEEeccccccc---cceeEEEcCCHHHHHHHHHhcc--ccCCCcccchhhHHHHHHHHHHHHH
Confidence 0111 13588866 466553 3444 4443 556665432100 01122333333 2333333333444
Q ss_pred hcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHH-HHHHHHHCCcEEEe
Q 002941 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS-LLKKLREDGVYMRP 821 (863)
Q Consensus 743 l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~-l~~~l~e~GV~~~p 821 (863)
..+.++.++..++.++|.+.|.+ . ..|.+. ...+..+.++........+........ +...+.+.||...+
T Consensus 309 ~~~~~~l~~r~~~~~~L~e~L~~----~--g~~vv~--p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~ 380 (456)
T d1c7ga_ 309 AMQYEYIEHRVKQVRYLGDKLRE----A--GVPIVE--PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSME 380 (456)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHH----T--TCCBCS--SCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHh----c--cCCccc--CCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecc
Confidence 44555555555666666654422 1 233322 223344444433211000011111223 34444577886643
Q ss_pred cC------------------CEEEEecCC-CCcHHHHHHHHHHHHHHHHHHH
Q 002941 822 LG------------------NVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 822 ~g------------------~~lr~~ppl-~~t~eeid~~v~~L~~~l~~l~ 854 (863)
.| +.+||+.|. ..|++|||.++++|+++.++.+
T Consensus 381 ~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~ 432 (456)
T d1c7ga_ 381 RGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp ESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGG
T ss_pred cCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhh
Confidence 21 468998774 5699999999999988775443
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.34 E-value=1.4e-10 Score=129.16 Aligned_cols=212 Identities=11% Similarity=0.075 Sum_probs=123.2
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcch--hhhc------CCCCc----E
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLL------GCVPD----I 684 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a--~e~~------gv~PD----i 684 (863)
+...+.+++.| ++..|.. .+.+.+++|.++|++||+++|.||++..+...|..+. .+.. ...+| +
T Consensus 187 ~~~~~~~l~nP--~NPtG~~-~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~ 263 (428)
T d1iaya_ 187 IKVKGLILTNP--SNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV 263 (428)
T ss_dssp CCEEEEEEESS--CTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred CCceEEEEccC--CCccccc-ccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEE
Confidence 44455667778 7888854 4777899999999999999999999987744443221 1111 11233 2
Q ss_pred EEeccccC-CCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChh----hHHhHHHHHHH
Q 002941 685 ACYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ----TNHNIIPERRI 758 (863)
Q Consensus 685 vt~sKgLg-gG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~----l~~~l~~~~~~ 758 (863)
-+|||.++ .| +.+|++++ ++.+.+.+... ..+ ...+.....++.+.+. .++ +.+..++..+.
T Consensus 264 ~s~SK~~~~~G-lRiG~~~~~~~~l~~~~~~~-------~~~-~~~~~~~~~~~~a~l~---~~~~~~~~~~~~~~~l~~ 331 (428)
T d1iaya_ 264 YSLSKDMGLPG-FRVGIIYSFNDDVVNCARKM-------SSF-GLVSTQTQYFLAAMLS---DEKFVDNFLRESAMRLGK 331 (428)
T ss_dssp EESTTTSSCGG-GCEEEEEESCHHHHHHHHHH-------HTT-SCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcccCCC-cccccccccccchhhhhhhh-------hcc-cccccccccchhhhhh---hhccccccccccccccch
Confidence 26799886 56 89999987 56677766531 111 1122233333223222 222 22223332233
Q ss_pred HHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHH-CCcEEEec-------CCEEEEe
Q 002941 759 LRELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLM 829 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e-~GV~~~p~-------g~~lr~~ 829 (863)
.++.+ .+.++..+ +..... -|.++.+++...... .......++++.|++ +||++.|+ .+.+|++
T Consensus 332 r~~~~----~~~L~~~g-i~~~~p~gg~f~w~~l~~~~~~--~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris 404 (428)
T d1iaya_ 332 RHKHF----TNGLEVVG-IKCLKNNAGLFCWMDLRPLLRE--STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVC 404 (428)
T ss_dssp HHHHH----HHHHHHTT-CCBCCCSSSSEEEEECGGGCSS--SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEE
T ss_pred hHHHH----HHHHHhCC-CEEecCCcceEEEEECcccccc--CCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEE
Confidence 33333 33333333 222333 367888888643211 111234567777775 69999873 2678886
Q ss_pred cCCCCcHHHHHHHHHHHHHHHH
Q 002941 830 CGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 830 ppl~~t~eeid~~v~~L~~~l~ 851 (863)
. ...+++++++++++|+++|.
T Consensus 405 ~-a~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 405 F-ANMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp C-SSSCHHHHHHHHHHHHHHHH
T ss_pred e-CCCCHHHHHHHHHHHHHHHh
Confidence 3 23577889999999998875
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.33 E-value=4.5e-10 Score=124.29 Aligned_cols=340 Identities=10% Similarity=0.008 Sum_probs=203.2
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCC-------hHHHHHHHHHHhhcCCCCCCeEEEeCChhh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~p~~~~~~v~f~~SGSe 472 (863)
-|||..+ .|- -.+.|.+++.+.++.... +.....+ +...+..++++++++...-+.++|++++++
T Consensus 24 iYld~a~------~~~-~p~~v~~~~~~~~~~~~~-n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~ 95 (408)
T d1t3ia_ 24 VYLDNAA------TSQ-KPRAVLEKLMHYYENDNA-NVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATE 95 (408)
T ss_dssp EECBTTT------CCC-CCHHHHHHHHHHHHHTCC-CC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred EEeeCcc------ccC-CCHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHH
Confidence 3777443 233 467889999888776421 1111122 233455677778887532356899999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCc
Q 002941 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (863)
Q Consensus 473 AvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (863)
++..++.... ... .+ .| ..|++....|++............ +.
T Consensus 96 ~~n~~~~~~~-~~~-~~---~g------------~~il~s~~e~~s~~~~~~~~~~~~--------------g~------ 138 (408)
T d1t3ia_ 96 AINLVAYSWG-MNN-LK---AG------------DEIITTVMEHHSNLVPWQMVAAKT--------------GA------ 138 (408)
T ss_dssp HHHHHHHHTH-HHH-CC---TT------------CEEEEETTCCGGGTHHHHHHHHHH--------------CC------
T ss_pred HHHHHHhhcc-ccc-cC---CC------------CEEEeecccchhhhhhhhhhhhcc--------------Cc------
Confidence 9877776541 111 11 11 467877777766543322111000 00
Q ss_pred ccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 002941 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (863)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~ 632 (863)
.+..++.+... ..+ .+.++..+ .+++..|.+--+ ++.
T Consensus 139 -----~v~~~~~~~~~---------------------~~~--------~~~l~~~~--------~~~t~lv~i~~~-~~~ 175 (408)
T d1t3ia_ 139 -----VLKFVQLDEQE---------------------SFD--------LEHFKTLL--------SEKTKLVTVVHI-SNT 175 (408)
T ss_dssp -----EEEEECBCTTS---------------------SBC--------HHHHHHHC--------CTTEEEEEEESB-CTT
T ss_pred -----eEeeeeccccc---------------------ccc--------HHHhhhcc--------CCCceEEEEecc-ccc
Confidence 01112211100 001 13344433 346788888887 889
Q ss_pred CCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHh
Q 002941 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (863)
Q Consensus 633 gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~ 710 (863)
.|.+.| ++++.++|+++|+++++|=+| ++|.. ..-...+ .+|+++++ |.+ |+ --+|++..++++...
T Consensus 176 tG~~~p----~~~i~~~~~~~g~~~ivDa~q-~~g~~--~id~~~~--~~D~~~~s~hK~~-gp-~G~g~l~v~~~~~~~ 244 (408)
T d1t3ia_ 176 LGCVNP----AEEIAQLAHQAGAKVLVDACQ-SAPHY--PLDVQLI--DCDWLVASGHKMC-AP-TGIGFLYGKEEILEA 244 (408)
T ss_dssp TCBBCC----HHHHHHHHHHTTCEEEEECTT-TTTTS--CCCHHHH--TCSEEEEEGGGTT-SC-TTCEEEEECHHHHHH
T ss_pred ccccCc----HHHHhhhhhccCceeeeccce-ecccc--ccccccc--CCceEEecccccc-CC-CCccccccchhhhhc
Confidence 999988 899999999999999999888 35432 2223333 46999886 864 44 457889999998765
Q ss_pred hhcCCc-cce-------------eeccc-CCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 711 FVGDSK-LKA-------------LLHGH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 711 l~~~~~-~~~-------------~~~~~-T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
...... ... ....+ +-+.+..++++..++++++.+-+ .+++.+....+.+++ .+.+...+
T Consensus 245 ~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l----~~~~~~~~ 319 (408)
T d1t3ia_ 245 MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLG-MENIHNYEVELTHYL----WQGLGQIP 319 (408)
T ss_dssp SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHH----HHHHHTCT
T ss_pred CCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHhHH----hhhhccCc
Confidence 432100 000 00000 11346677777888888875433 345566565666544 34455565
Q ss_pred CeeEe------cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-------------CCEEEEecCCCCcH
Q 002941 776 TVQRV------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSP 836 (863)
Q Consensus 776 ~v~~v------rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g~~lr~~ppl~~t~ 836 (863)
.+.-+ ...+.++.+.+.... ...+...|.++||.++.+ .+.+|+++....|+
T Consensus 320 ~~~~~~~~~~~~~~~~iv~f~~~~~~---------~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~ 390 (408)
T d1t3ia_ 320 QLRLYGPNPKHGDRAALASFNVAGLH---------ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTK 390 (408)
T ss_dssp TEEEESCCGGGSCBCSEEEEEETTBC---------HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCH
T ss_pred cccccCCCccccCcceEEEEEeCCCC---------HHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCH
Confidence 44322 123456677665432 556778888999988631 36799999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRLEE 852 (863)
Q Consensus 837 eeid~~v~~L~~~l~~ 852 (863)
+|||+++++|+++++.
T Consensus 391 ~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 391 EEIDLFLQSLQATIRF 406 (408)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.31 E-value=2.1e-12 Score=141.48 Aligned_cols=215 Identities=9% Similarity=-0.010 Sum_probs=114.7
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc--hhhhcCCCCcEEEe--ccccCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCVPDIACY--GKLLTG 693 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~--a~e~~gv~PDivt~--sKgLgg 693 (863)
++..+|+++.. .+..+ .+..-+++|.++|++||+++|+||+|. .+..+..+ ....+| .|++++ +|+++|
T Consensus 132 ~~tk~i~~~~p-~n~~~---~~~~~l~~i~~ia~~~~~~~i~De~y~-~~~~~~~~~~~~~~~~--~di~~~S~sK~~~g 204 (366)
T d2aeua1 132 KDTLVIITGST-MDLKV---IELENFKKVINTAKNKEAIVFVDDASG-ARVRLLFNQPPALKLG--ADLVVTSTDKLMEG 204 (366)
T ss_dssp TTEEEEEECBC-TTSCB---CCHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHTTCCCHHHHT--CSEEEEETTSSSSS
T ss_pred CCceEEEEEec-CCCCc---CCHHHHHHHHHHhccCcEEEEEecCcc-ccccccccCCCHhhcC--ceEEEecccccccc
Confidence 34566766632 34322 244559999999999999999999984 33322111 112234 477755 677764
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+.+|++++++++++.+... ....+++.+|..++++.++|+.+.-. ..++..++.+.+...+.+.+......
T Consensus 205 --~~~G~i~~~~~~i~~~~~~------~~~~g~~~~~~~~~a~~~aL~tl~~~-r~~~~~~~~~~i~~~~~~~~~~~~~~ 275 (366)
T d2aeua1 205 --PRGGLLAGKKELVDKIYIE------GTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELKA 275 (366)
T ss_dssp --CSCEEEEEEHHHHHHHHHH------HHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred --cceeEEEecHHHHHHHHHH------HhcccccCCHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhhhccccc
Confidence 6789999999999988641 12344566788888888888765311 12233333443333333333333333
Q ss_pred CCCeeEe--cccceE-EEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec-----C-CEEEEecCCCCcHH-HHHHH
Q 002941 774 HRTVQRV--VALGTL-CAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----G-NVIYLMCGPCSSPE-VCSQL 842 (863)
Q Consensus 774 ~p~v~~v--rg~Gl~-~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~-----g-~~lr~~ppl~~t~e-eid~~ 842 (863)
.+..... ...+.+ +........ .+......+++..|+ +.||++.|. + +.+||+.....++. +.|.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l 352 (366)
T d2aeua1 276 IDDNINIVYERTPTGFVIKRVYKDD---TINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYI 352 (366)
T ss_dssp TCTTEEEEEEECSSEEEEEEEESSH---HHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHH
T ss_pred cccccCcccccCccchhccCCCcce---eecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHH
Confidence 3322111 111211 111111110 001112445666666 559988653 2 68898754322222 34555
Q ss_pred HHHHHHHHH
Q 002941 843 LLKLYQRLE 851 (863)
Q Consensus 843 v~~L~~~l~ 851 (863)
++++.+.++
T Consensus 353 ~~ai~~~lK 361 (366)
T d2aeua1 353 IKAIVESIK 361 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.6e-10 Score=125.28 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=118.9
Q ss_pred EEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE---EeccccC-CCCC
Q 002941 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (863)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---t~sKgLg-gG~~ 696 (863)
..+++.| ++.+|.+. +++.++.+.+.|+ ++.++|+||++..|...... .......+.++ +|||.++ .| +
T Consensus 147 ~v~~~~p--nNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~--~~~~~~~~~~iv~~S~SK~~~laG-l 219 (354)
T d1fg7a_ 147 VVYVCSP--NNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASL--AGWLAEYPHLAILRTLSKAFALAG-L 219 (354)
T ss_dssp EEEEESS--CTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCS--GGGTTTCTTEEEEEESSSTTCCGG-G
T ss_pred eeeccCC--CccceeEe-eeccccccccccc-ccccccccccchhhcccccc--chhhcccccceEEeCCccccCCCc-c
Confidence 4555566 68888665 6777888877775 57778888887666332221 11222344444 7899987 77 8
Q ss_pred CceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
.+|++++++++++.+.. ....+..+..+..++.+++..-....+..++ +.....++ .+.+.+.+.+.
T Consensus 220 RiGy~i~~~~~i~~l~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~r~----~l~~~l~~~~~ 286 (354)
T d1fg7a_ 220 RCGFTLANEEVINLLMK--------VIAPYPLSTPVADIAAQALSPQGIVAMRERV-AQIIAERE----YLIAALKEIPC 286 (354)
T ss_dssp CCEEEEECHHHHHHHHH--------HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHH-HHHHHHHH----HHHHHHHHSTT
T ss_pred ccccccccchhhhhhhh--------hcCccchhhHHHHHHHHHHhhhccccccccc-hhhhhHHH----HHHHHHHhCCC
Confidence 99999999999998864 1223444544444444443211111111111 11122222 23344556676
Q ss_pred eeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC------CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 777 VQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG------NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 777 v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g------~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+..+ .+.|.++.+++.+ ...+++.|.++||++++.+ +.+|++ ..+++|.++++++|+
T Consensus 287 ~~~~~p~~~~f~~~~~~~-----------~~~~~~~L~~~gIlvr~~~~~~~~~~~lRis---igt~ee~~~~l~aLk 350 (354)
T d1fg7a_ 287 VEQVFDSETNYILARFKA-----------SSAVFKSLWDQGIILRDQNKQPSLSGCLRIT---VGTREESQRVIDALR 350 (354)
T ss_dssp EEEECCCSSSEEEEEETT-----------HHHHHHHHHHTTEECEECTTSTTCTTEEEEE---CCCHHHHHHHHHHHH
T ss_pred cceeCCCCceEEEEeCCC-----------HHHHHHHHHHCCcEEecCCCCCCCCCEEEEE---eCCHHHHHHHHHHHh
Confidence 6554 4556777777752 4568899999999998742 789986 458888888888775
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.5e-10 Score=127.36 Aligned_cols=315 Identities=10% Similarity=0.007 Sum_probs=175.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccce
Q 002941 446 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (863)
Q Consensus 446 ~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals 525 (863)
.++.+.++++++.+.....+|+++|+++...++.+|++.+ + .+ .++|.....-|.+..-++.
T Consensus 97 ~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~----~--~~------------~~~vi~~~~~H~s~~~a~~ 158 (445)
T d3bc8a1 97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----R--PK------------AKYIIWPRIDQKSCFKSMV 158 (445)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----C--TT------------CCEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh----C--CC------------CCEEEEcCcccHHHHHHHH
Confidence 3455667777764323567899999988877777774422 1 11 2344456666988777766
Q ss_pred ecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHH
Q 002941 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (863)
Q Consensus 526 ~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le 605 (863)
..|... .+++ +.|... .+ .-| .+.|+
T Consensus 159 ~~g~~~--------------~~v~-------------~~~~~~-----------------~~--~id--------~~~l~ 184 (445)
T d3bc8a1 159 TAGFEP--------------VVIE-------------NVLEGD-----------------EL--RTD--------LKAVE 184 (445)
T ss_dssp HTTCEE--------------EEEC-------------CEEETT-----------------EE--ECC--------HHHHH
T ss_pred HcCCee--------------EEEE-------------eeccCc-----------------cc--ccC--------HHHHH
Confidence 543110 0000 001000 00 012 24566
Q ss_pred HHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEeccccccccc-CC--cchhhhcCCCC
Q 002941 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV--ETTADLLGCVP 682 (863)
Q Consensus 606 ~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRt-G~--~~a~e~~gv~P 682 (863)
+.+++ ...+.+++|++... ....|.+.+ +++|.++|++||++|++|+++.++-.. .+ .++... -..
T Consensus 185 ~~i~~----~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~v 253 (445)
T d3bc8a1 185 AKIQE----LGPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV--GRI 253 (445)
T ss_dssp HHHHH----HCGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH--SCC
T ss_pred HHHHh----ccccCeEEEEEeCC-CCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCc--CCc
Confidence 66653 13345778877765 566787766 999999999999999999999533111 00 111111 136
Q ss_pred cEEEec--cccCCCCCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHH
Q 002941 683 DIACYG--KLLTGGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRIL 759 (863)
Q Consensus 683 Divt~s--KgLggG~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l 759 (863)
|+++++ |.++++ ...|+++.+ +.+.+.+.. ...+....... ..+.+++..+....+. ...+....+
T Consensus 254 d~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~g~~~~~-~~~~~~~~~ 322 (445)
T d3bc8a1 254 DAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISK------MYPGRASASPS---LDVLITLLSLGCSGYR-KLLKERKEM 322 (445)
T ss_dssp CEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHH------HSCSCBCSHHH---HHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred ceEEecCccccccC-CCCceeeeCChHHHHHHHH------HHhhcccCcch---HHHHHHHHHHhhhcch-hhHHHHHHH
Confidence 888774 888766 345556554 555554432 11222222222 3334444444332222 222222233
Q ss_pred HHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe-----------------
Q 002941 760 RELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------------- 821 (863)
Q Consensus 760 ~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----------------- 821 (863)
..++.+.+.+....+. .+...........+.+...... .......+...|.+.||-...
T Consensus 323 ~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~ 399 (445)
T d3bc8a1 323 FVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH---HDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRG 399 (445)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS---SSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEET
T ss_pred HHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeecccc---CCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhh
Confidence 3334444445444443 2344556666666666543211 112345677788888873210
Q ss_pred c--------CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002941 822 L--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 857 (863)
Q Consensus 822 ~--------g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~~~~ 857 (863)
. .+.+++.++..+|+||||.++++|+++++++++..
T Consensus 400 ~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~ 443 (445)
T d3bc8a1 400 FMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 443 (445)
T ss_dssp TTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 14578888888999999999999999999987654
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=9.5e-11 Score=128.13 Aligned_cols=206 Identities=13% Similarity=0.038 Sum_probs=126.1
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHH
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i 707 (863)
.+..|++.| ++++.++|++||+++++|.+|+ +|.. ..-.+. ...|+++++ |.++|- .-++.+..+++.
T Consensus 154 ~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~--~~d~~~--~~~D~~~~s~~K~~~gp-~g~~~~~~~~~~ 223 (388)
T d1h0ca_ 154 ESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT--PLYMDR--QGIDILYSGSQKALNAP-PGTSLISFSDKA 223 (388)
T ss_dssp ETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS--CCCTTT--TTCSEEEEESSSTTCCC-TTCEEEEECHHH
T ss_pred eeccccccC----HHHHHHHhhcccccceeccccc-cccc--cccccc--cccceecccccccccCC-CceEEEeecHHH
Confidence 567888887 8899999999999999999995 4322 222232 346888775 888653 345667788877
Q ss_pred HHhhhcCCc-cce----------------eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 708 FDSFVGDSK-LKA----------------LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 708 ~~~l~~~~~-~~~----------------~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
.+.+..... ... ....+..+.+..+.++..++++.+.+.+ .++..+....+.+.+.+.+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g-~~~~~~~~~~l~~~l~~~~~~~ 302 (388)
T d1h0ca_ 224 KKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQG-LENSWRQHREAAAYLHGRLQAL 302 (388)
T ss_dssp HHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhc-cccccccccchhHHHHHHHhhc
Confidence 766543210 000 0011122345567777888888875544 3344444455555444443222
Q ss_pred HhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEec-----CCEEEEe-cCCCCcHHHHHHH
Q 002941 771 ISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLM-CGPCSSPEVCSQL 842 (863)
Q Consensus 771 ~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p~-----g~~lr~~-ppl~~t~eeid~~ 842 (863)
.....+.+-. ....++.+.+.+.- ...++...|+++ ||.++.+ ++.+|+. ....+|.||||++
T Consensus 303 -g~~~~~~~~~~rs~~i~~~~~p~~~--------~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~l 373 (388)
T d1h0ca_ 303 -GLQLFVKDPALRLPTVTTVAVPAGY--------DWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRV 373 (388)
T ss_dssp -TCCBSSCSGGGBCTTEEEEECCTTC--------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred -CcccccCCHHHcCCeEEEEECCCCC--------CHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHH
Confidence 1111222211 12345666664321 245677777765 9988752 4789997 3466799999999
Q ss_pred HHHHHHHHHHHHH
Q 002941 843 LLKLYQRLEEFDK 855 (863)
Q Consensus 843 v~~L~~~l~~l~~ 855 (863)
+++|+++|+++.+
T Consensus 374 i~aL~~~L~~l~k 386 (388)
T d1h0ca_ 374 TEALRAALQHCPK 386 (388)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988753
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=7.7e-10 Score=121.15 Aligned_cols=342 Identities=13% Similarity=0.044 Sum_probs=177.7
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhccc-ccCCCCCC-------hHHHHHHHHHHhhcCCCCCCeEEEeCChh
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~-~~~~~~~~-------~~~~eLae~L~~~~p~~~~~~v~f~~SGS 471 (863)
-|+|..+ -|- -+|.|++|+.+.+.+... .......+ +...++.++++++++.. .+.|.|+++++
T Consensus 4 iYlD~aa------~~p-~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~-~~~I~~~~~~t 75 (391)
T d1p3wa_ 4 IYLDYSA------TTP-VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 75 (391)
T ss_dssp EECBTTT------CCC-CCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EEeeCcc------ccC-CCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHH
Confidence 5888553 233 579999999887654322 11111222 22335567788888865 47899999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+++..++.... ..... .| ..||+.+..|++.......+.. . |.
T Consensus 76 ~~l~~~~~~~~-~~~~~----~g------------d~Vv~~~~~~~s~~~~~~~~~~----~-----------G~----- 118 (391)
T d1p3wa_ 76 ESDNLAIKGAA-NFYQK----KG------------KHIITSKTEHKAVLDTCRQLER----E-----------GF----- 118 (391)
T ss_dssp HHHHHHHHHHH-HHHGG----GC------------CEEEEETTSCHHHHHHHHHHHH----T-----------TC-----
T ss_pred HHHHHHHhhhh-hhhcC----CC------------CEEEEeccccchHHHHHHHHHH----c-----------CC-----
Confidence 99998887662 22111 12 5677777766554221111100 0 00
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg 631 (863)
.+..++..... .-| .+.+++.+. +++.+|++.-+ ++
T Consensus 119 ------~v~~v~~~~~~---------------------~~d--------~~~~~~~i~--------~~T~lv~is~~-~n 154 (391)
T d1p3wa_ 119 ------EVTYLAPQRNG---------------------IID--------LKELEAAMR--------DDTILVSIMHV-NN 154 (391)
T ss_dssp ------EEEEECCCTTS---------------------CCC--------HHHHHHHCC--------TTEEEEECCSB-CT
T ss_pred ------EEEEeCCCCCC---------------------eEc--------HHHHHHhCC--------CCcEEEEEECC-CC
Confidence 00111111000 001 134445552 46788888887 89
Q ss_pred CCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i~~ 709 (863)
..|.+.+ +++|.++|++||+++++|.+|+ +|.. ..-.. ...+|++++ -|.+| + .-+|++.++++...
T Consensus 155 ~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~--~~d~~--~~~~D~~~~s~~k~~g-~-~g~g~~~~~~~~~~ 223 (391)
T d1p3wa_ 155 EIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL--PIDLS--QLKVDLMSFSGHKIYG-P-KGIGALYVRRKPRV 223 (391)
T ss_dssp TTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB--CCCTT--TSCCSEEEEESTTTTS-C-SSCEEEEECBTTBC
T ss_pred CCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc--cccch--hccccccccccccccC-C-CceEEEEEecchhc
Confidence 9999888 8899999999999999999994 5422 11222 234787765 46653 2 34677888777554
Q ss_pred hhhcCCccceeecccCCC-ccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCee--E--ecccc
Q 002941 710 SFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ--R--VVALG 784 (863)
Q Consensus 710 ~l~~~~~~~~~~~~~T~~-~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~--~--vrg~G 784 (863)
.................+ .+....++....++...+ . .....++.+.+.. .+.+.+...+.+. . -.+..
T Consensus 224 ~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~ 297 (391)
T d1p3wa_ 224 RIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-E-MATEMERLRGLRN----RLWNGIKDIEEVYLNGDLEHGAP 297 (391)
T ss_dssp CCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHH----HHHHTTTTSTTEEECSCTTTSCT
T ss_pred ccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHH-H-hhHHHHHHHHHHH----HHHHHHHhhcCeeecccccccCc
Confidence 433210000000001111 122222222222332211 1 1111222222332 2233333443221 0 11223
Q ss_pred eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCc----EEE------------------ecCCEEEEecCCCCcHHHHHHH
Q 002941 785 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGV----YMR------------------PLGNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 785 l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV----~~~------------------p~g~~lr~~ppl~~t~eeid~~ 842 (863)
.++.+.+.... ...+...|.+.|| .+. ..++.+|+++...+|+||||.+
T Consensus 298 ~~~~~~~~~~~---------~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l 368 (391)
T d1p3wa_ 298 NILNVSFNYVE---------GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYT 368 (391)
T ss_dssp TEEEEEETTSC---------HHHHHHHTTTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHH
T ss_pred eEEEEEeCCCC---------hHHHHHHhCCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHH
Confidence 34444443322 3334444432221 111 0125799999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002941 843 LLKLYQRLEEFDKV 856 (863)
Q Consensus 843 v~~L~~~l~~l~~~ 856 (863)
+++|+++++++++.
T Consensus 369 ~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 369 IELVRKSIGRLRDL 382 (391)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.18 E-value=7.2e-10 Score=123.31 Aligned_cols=217 Identities=13% Similarity=0.022 Sum_probs=122.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCC
Q 002941 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (863)
Q Consensus 602 ~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (863)
++|++.+++ ....+.+++|++... ...+|.+.+ +++|.++|++||++|++|+++.++......+........
T Consensus 197 ~~l~~~i~~---~~~~~~~~~v~~~~~-~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~ 268 (434)
T d2z67a1 197 EDIENAIKK---EIELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYR 268 (434)
T ss_dssp HHHHHHHHH---HHHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHh---hhhcCCceEEEeccC-cCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCC
Confidence 445566643 112345677777764 566777665 999999999999999999999543111111111112345
Q ss_pred CcEEEec--cccCCCCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHH
Q 002941 682 PDIACYG--KLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (863)
Q Consensus 682 PDivt~s--KgLggG~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~ 758 (863)
.|+++++ |.++++ ...|++.. ++.+.+.+... ..+.+...+...+.+++..+....-.++.++..++.++
T Consensus 269 ~D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~ 341 (434)
T d2z67a1 269 VDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLS------YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKL 341 (434)
T ss_dssp CSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTT------SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEcCccccccC-CCccccccCcHHHHHHHHhh------cccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 7999876 988765 45555654 45666665532 23334444444444443333321112233344444444
Q ss_pred HHHHHHHHHHHHHhcCC-CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----------------
Q 002941 759 LRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP---------------- 821 (863)
Q Consensus 759 l~~~l~~~l~~~~~~~p-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p---------------- 821 (863)
+.+ .+.++...+. .+.+.+. ...+.+.+..+ ...+...|.++||....
T Consensus 342 l~~----~L~~l~~~~g~~ll~~~~-~~~~~~~~~~~----------~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~ 406 (434)
T d2z67a1 342 LDE----LLNDLSKKTGGKFLDVES-PIASCISVNSD----------PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTY 406 (434)
T ss_dssp HHH----HHHHHHHHSSCCBCCCCC-SSEEEEECSSC----------HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCC
T ss_pred HHH----HHHHhhhhcCceecCCCC-CceeeeecCCC----------HHHHHHHHHHcCCeeeehhhhccccCeeeeccc
Confidence 444 4444433222 1212111 12223333222 45678889999986531
Q ss_pred cCCEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 822 LGNVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 822 ~g~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
..+.+++..+..+|+||||.++++|++
T Consensus 407 ~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 407 THDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 126788888888999999999999875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.8e-09 Score=118.15 Aligned_cols=335 Identities=14% Similarity=0.060 Sum_probs=197.9
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcccc-cCCCCCChHHHHHHHHHHhhcCCCC-CC-eEEEeCChhhHHHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEI 476 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~-~~~~~~~~~~~eLae~L~~~~p~~~-~~-~v~f~~SGSeAvE~ 476 (863)
..||+..|.- .+. .++.+.+|+.+.+.+..+. ....+..+....+|+.+.+..+... .+ .++.++++++|...
T Consensus 27 ~~i~l~~G~P--d~~--~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 102 (382)
T d1u08a_ 27 QAINLSQGFP--DFD--GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 102 (382)
T ss_dssp TCEECCCSSC--SSC--CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCEEccCCCC--CCC--CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence 4566665432 222 4678999999988764321 1122344566667888877655321 23 59999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccccc
Q 002941 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (863)
Q Consensus 477 ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (863)
+++.... .| ..|+..+-+|..........+. .
T Consensus 103 ~~~~l~~---------~g------------d~vl~~~p~y~~~~~~~~~~g~-~-------------------------- 134 (382)
T d1u08a_ 103 AITALVR---------NG------------DEVICFDPSYDSYAPAIALSGG-I-------------------------- 134 (382)
T ss_dssp HHHHHCC---------TT------------CEEEEEESCCTTHHHHHHHTTC-E--------------------------
T ss_pred HHhhccc---------cc------------ceEEEecccccchhhhhhhccc-c--------------------------
Confidence 9876621 12 5688888888765332222110 0
Q ss_pred CceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCce
Q 002941 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (863)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~ 636 (863)
...++.+... ...| .+.+++... ....+.+++.| ++..|.+
T Consensus 135 --~~~~~~~~~~--------------------~~~d--------~~~l~~~~~-------~~~~~i~l~~P--~NPtG~v 175 (382)
T d1u08a_ 135 --VKRMALQPPH--------------------FRVD--------WQEFAALLS-------ERTRLVILNTP--HNPSATV 175 (382)
T ss_dssp --EEEEECCTTT--------------------CCCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC
T ss_pred --ceeccccccc--------------------ccCC--------HHHHhhhhc-------cCccEEEECCC--Ccccccc
Confidence 0001111000 0011 123443332 23445666678 7888865
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh-hhcCCCCc----EEEeccccC-CCCCCceeeeccHHHHHh
Q 002941 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDS 710 (863)
Q Consensus 637 ~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PD----ivt~sKgLg-gG~~Pigav~~~~~i~~~ 710 (863)
. +.+.+++|.++|++++++++.||++.-+-..+..... ......+| +..+||.++ .| +.+|++++++++.+.
T Consensus 176 ~-~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG-~RiG~~v~~~~~~~~ 253 (382)
T d1u08a_ 176 W-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAE 253 (382)
T ss_dssp C-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHH
T ss_pred c-ccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc-ccchhhhccchhHHH
Confidence 4 7778999999999999999999998654333321111 00101122 236689886 67 899999999999887
Q ss_pred hhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccc-ceEEEE
Q 002941 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (863)
Q Consensus 711 l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~-Gl~~~i 789 (863)
+... ....+++.+.....++.++++. .+++...+++.-+..++.+ .+.+... .+..+... |+++.+
T Consensus 254 ~~~~------~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l----~~~~~~~-g~~~~~p~gg~~~~~ 320 (382)
T d1u08a_ 254 IRKV------HQYLTFSVNTPAQLALADMLRA--EPEHYLALPDFYRQKRDIL----VNALNES-RLEILPCEGTYFLLV 320 (382)
T ss_dssp HHHH------HHHHTSSCCHHHHHHHHHHHHH--CTHHHHTHHHHHHHHHHHH----HHHTTSS-SCEECCCCBSSEEEE
T ss_pred HHhh------hccccccccccccccccccccc--chHHHHHHHHHHHhhhhhh----hhhhccC-CcEEecCCceEEEEE
Confidence 7541 2334566777777777777764 3445555555555544433 3333333 34444455 556667
Q ss_pred EEccCCcCCCCchHHHHHHHHHHH-HCCcEEEec--------C-CEEEEecCCCCcHHHHHHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL--------G-NVIYLMCGPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~--------g-~~lr~~ppl~~t~eeid~~v~~L~~ 848 (863)
.+..... ....+++..|+ ++||.+.|+ + +.+|++ ++.++|++++++++|++
T Consensus 321 ~~~~~~~------~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 321 DYSAVST------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKESTLLAAAERLRQ 381 (382)
T ss_dssp ECTTTCC------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCHHHHHHHHHHHTT
T ss_pred ecCCCCC------CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCHHHHHHHHHHHhC
Confidence 7753210 01455777665 679999873 1 468885 46688999998888764
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.14 E-value=4.1e-09 Score=115.32 Aligned_cols=341 Identities=13% Similarity=0.031 Sum_probs=195.6
Q ss_pred eEEeeecccccccCCCCCcHHHHHHHHHHHHhcc-ccc----CCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHH
Q 002941 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (863)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~-~~~----~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAv 474 (863)
-|||.. ..|. -...|.+|+.+.+.... ... ......+...+.-++++++++.. .+.+.|+.++|+++
T Consensus 29 iYLd~a------s~g~-~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~-~~ei~~~~~~T~~~ 100 (404)
T d1qz9a_ 29 IYLDGN------SLGA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 100 (404)
T ss_dssp EECCTT------TSCC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EEcCCc------cccc-CCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCC-CCcEEEecCchHHH
Confidence 677733 3454 46778899888876531 110 00112245567888899998865 57899999999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCccc
Q 002941 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (863)
Q Consensus 475 E~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (863)
..++..++... ...+ .+ ..+|..+..+|............. ..... .
T Consensus 101 ~~~~~~~~~~~-~~~~--~~------------~~vi~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~-- 147 (404)
T d1qz9a_ 101 FKVLSAALRVQ-ATRS--PE------------RRVIVTETSNFPTDLYIAEGLADM---------------LQQGY-T-- 147 (404)
T ss_dssp HHHHHHHHHHH-HHHS--TT------------CCEEEEETTSCHHHHHHHHHHHHH---------------HCSSC-E--
T ss_pred HHHhhhhhhhh-cccC--CC------------cEEEEeccccchHHHHHHhhhhee---------------eeece-e--
Confidence 88877653221 1111 11 345666655554322221110000 00000 0
Q ss_pred ccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 002941 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (863)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG 634 (863)
.+ ...+. +.+++.+ .+++..|.+--+ ++..|
T Consensus 148 ---------~~-----------------------~~~~~--------~~~~~~i--------~~~T~lV~i~~v-~~~tG 178 (404)
T d1qz9a_ 148 ---------LR-----------------------LVDSP--------EELPQAI--------DQDTAVVMLTHV-NYKTG 178 (404)
T ss_dssp ---------EE-----------------------EESSG--------GGHHHHC--------STTEEEEEEESB-CTTTC
T ss_pred ---------cc-----------------------ccccc--------hhHHHhc--------CCCceEEEEecc-ccccc
Confidence 00 00000 1223333 246778888887 89999
Q ss_pred ceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhh
Q 002941 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (863)
Q Consensus 635 ~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~ 712 (863)
.+.| +++|.++|+++|+++++|=+|+ +|... .-.+. ..+|.++++ |.+.+|---.|.+..+++..+.+.
T Consensus 179 ~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~--~~~~~--~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~ 249 (404)
T d1qz9a_ 179 YMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQ--AGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 249 (404)
T ss_dssp BBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred ceec----HHHHhccccccccceeEEeecc-ccccc--ccccc--ccceEEEEechhhcccCCceEEEEEechhhhhhCC
Confidence 9998 9999999999999999999994 54322 22222 356777664 766543112345666666655433
Q ss_pred cCCc-cc----------------eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002941 713 GDSK-LK----------------ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (863)
Q Consensus 713 ~~~~-~~----------------~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p 775 (863)
.... .. ..........+..+.....+.++.+.+.. .+.+.+....+...+.... ..+...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~-~~~~~~~ 327 (404)
T d1qz9a_ 250 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD-MASLRRKSLALTDLFIELV-EQRCAAH 327 (404)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH-HHHHTTS
T ss_pred ccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhh-HHHHHHHHHHhHHHHHHHH-HhhccCC
Confidence 1100 00 00011122345677777777777765432 3344444444444443322 2222333
Q ss_pred Cee-----EecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-CCEEEEec-CCCCcHHHHHHHHHHHHH
Q 002941 776 TVQ-----RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMC-GPCSSPEVCSQLLLKLYQ 848 (863)
Q Consensus 776 ~v~-----~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-g~~lr~~p-pl~~t~eeid~~v~~L~~ 848 (863)
.+. +...+|.++++.+.+ +..+.+.|.++||++... ++.+|++| ++.+|++|||+++++|++
T Consensus 328 ~~~i~~p~~~~~r~~~vsf~~~~-----------~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~ 396 (404)
T d1qz9a_ 328 ELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGE 396 (404)
T ss_dssp CCEECSCSSGGGBCSEEEEECTT-----------HHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CEEEECCCCccceeeEEEEecCC-----------HHHHHHHHHHCCCEEeecCCCeEEEECCCCCCCHHHHHHHHHHHHH
Confidence 222 122345666665532 456888999999987543 58999998 567999999999999999
Q ss_pred HHHH
Q 002941 849 RLEE 852 (863)
Q Consensus 849 ~l~~ 852 (863)
+|++
T Consensus 397 vl~~ 400 (404)
T d1qz9a_ 397 ILDR 400 (404)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.14 E-value=5.3e-10 Score=120.55 Aligned_cols=210 Identities=11% Similarity=0.035 Sum_probs=128.5
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCC
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~ 696 (863)
++..+.+--+ .+..|.+.| ++++.++|++||+++++|-+|+ +|.. .+-.+ ....|+++++ |+++|. .
T Consensus 127 ~~~~v~~~~~-~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~--~~d~~--~~~~D~~~~s~~K~l~gp-~ 195 (361)
T d1m32a_ 127 TISHIAMVHS-ETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI--PMDIA--ALHIDYLISSANKCIQGV-P 195 (361)
T ss_dssp TCCEEEEESE-ETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-S
T ss_pred CccceEEEee-ecccccchh----hhhhhhhhcccceeeEeecccc-cCcc--ccccc--ccccceEEeeecccccCC-C
Confidence 4555555555 666888887 8999999999999999999995 4422 12222 2357999887 888764 3
Q ss_pred CceeeeccHHHHHhhhcCCcc------------ceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHH
Q 002941 697 PLAATLATNAVFDSFVGDSKL------------KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (863)
Q Consensus 697 Pigav~~~~~i~~~l~~~~~~------------~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~ 764 (863)
-+|.+..+++..+........ ........++.+...+.+...+++.+.+++..+...++.+.....+.
T Consensus 196 G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 275 (361)
T d1m32a_ 196 GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLV 275 (361)
T ss_dssp SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 467788898887765432100 00001122344566667777777766554444444444444443332
Q ss_pred HHHHHHHhcCCC--eeE--ecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec----CCEEEEecCCCCcH
Q 002941 765 LELIQQISSHRT--VQR--VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSP 836 (863)
Q Consensus 765 ~~l~~~~~~~p~--v~~--vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~----g~~lr~~ppl~~t~ 836 (863)
+.+...+. ..+ .|.. .++++.+.... .....++.+.|.++|+++.++ ++.+|+..--.+++
T Consensus 276 ----~~~~~~g~~~~~~~~~rs~-~v~~~~~p~~~------~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~ 344 (361)
T d1m32a_ 276 ----AGMRALGFNTLLDDELHSP-IITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYA 344 (361)
T ss_dssp ----HHHHHTTCCBSSCGGGBCS-SEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCH
T ss_pred ----HHHhhcCCcccCChhhcCC-cEEEEECCCCC------CCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCH
Confidence 22332221 111 2222 34556554321 012567889999999998764 37889873225799
Q ss_pred HHHHHHHHHHHHHH
Q 002941 837 EVCSQLLLKLYQRL 850 (863)
Q Consensus 837 eeid~~v~~L~~~l 850 (863)
+|||+++++|+++|
T Consensus 345 ~di~~lv~al~~~L 358 (361)
T d1m32a_ 345 ADITALLTAIRTAM 358 (361)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.13 E-value=1.9e-09 Score=120.81 Aligned_cols=215 Identities=14% Similarity=0.034 Sum_probs=113.6
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchh--hhcC----C--CCcEEEe--ccccCCCCCCce
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--DLLG----C--VPDIACY--GKLLTGGVIPLA 699 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~--e~~g----v--~PDivt~--sKgLggG~~Pig 699 (863)
.+..|.+.+ +++|.++|++||++|++||+|.........+.. ...| . ..|++++ .|.+++. -.|
T Consensus 183 ~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~--~~g 256 (462)
T d1c4ka2 183 GTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQT 256 (462)
T ss_dssp BCTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTC
T ss_pred eeeccchhh----HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc--cce
Confidence 467788887 999999999999999999999532222221111 1112 1 2388876 5988752 223
Q ss_pred eeec-cHHHHHhhhc-CC---ccceeecccCCCccHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHH
Q 002941 700 ATLA-TNAVFDSFVG-DS---KLKALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQI 771 (863)
Q Consensus 700 av~~-~~~i~~~l~~-~~---~~~~~~~~~T~~~~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~ 771 (863)
+++. +.+....... .. ..+......|.+.+...+++.-++..+++.+ ++.++..++..++++.+ .+..
T Consensus 257 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l----~~~~ 332 (462)
T d1c4ka2 257 SQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKL----IKAG 332 (462)
T ss_dssp EEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH----HHTT
T ss_pred EEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHhh
Confidence 4443 3322211000 00 0001122345566777777766667766432 23444555555555533 2211
Q ss_pred hcC----C-Cee-------------------------------EecccceE-----EEEEEccCCcCC---CCchHHHHH
Q 002941 772 SSH----R-TVQ-------------------------------RVVALGTL-----CAIELQAAGCNA---GYGSLYAAS 807 (863)
Q Consensus 772 ~~~----p-~v~-------------------------------~vrg~Gl~-----~~iel~~~~~~~---~~~~~~~~~ 807 (863)
... + .+. .+.....+ +.+....-.... ......+..
T Consensus 333 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~ 412 (462)
T d1c4ka2 333 SMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATI 412 (462)
T ss_dssp CSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHH
T ss_pred hhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHH
Confidence 100 0 000 00000000 112111000000 000012456
Q ss_pred HHHHHHHCCcEEEec-CCEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Q 002941 808 LLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 854 (863)
Q Consensus 808 l~~~l~e~GV~~~p~-g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l~ 854 (863)
+.+.|+++||..-.. .+.+|+..+..+|++++|.++++|.+..+.++
T Consensus 413 ~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~ 460 (462)
T d1c4ka2 413 VANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 460 (462)
T ss_dssp HHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHh
Confidence 788889999977544 47899999999999999999999988766554
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.00 E-value=6.3e-09 Score=112.49 Aligned_cols=201 Identities=14% Similarity=0.029 Sum_probs=112.6
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHH
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i 707 (863)
.+..|.+.+ ++++.++|+++|+++++|.+++ +|.. ..-.+ ....|+++++ |+++|+ --+|.+..+++.
T Consensus 153 ~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~gp-~g~~~~~~~~~~ 222 (377)
T d1vjoa_ 153 ETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV--PIFLD--AWGVDLAYSCSQKGLGCS-PGASPFTMSSRA 222 (377)
T ss_dssp ETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCSC-SSCEEEEECHHH
T ss_pred eccceeeec----hhhhhhhhhhccceEEEecchh-hhhh--hhccc--ccccceeeecccccccCC-CEEEEecchhhH
Confidence 556788887 8899999999999999999994 5322 22223 2356888775 567654 345667778887
Q ss_pred HHhhhcCCc-cce------------eecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 708 FDSFVGDSK-LKA------------LLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 708 ~~~l~~~~~-~~~------------~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
.+....... ... .....+. ..+-..+.+..+++..+.+.+ .+...+..+.....+.+.+.+. .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~l~~~l~~~--~ 299 (377)
T d1vjoa_ 223 IEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEG-LANCWQRHQKNVEYLWERLEDI--G 299 (377)
T ss_dssp HHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcC-chHHHHHHHHHhhhhhhhhhcc--C
Confidence 776543210 000 0001111 223334444455555544332 2233333333333333232221 1
Q ss_pred CCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEe-----cCCEEEEec-CCCCcHHHHHHHHHH
Q 002941 774 HRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRP-----LGNVIYLMC-GPCSSPEVCSQLLLK 845 (863)
Q Consensus 774 ~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p-----~g~~lr~~p-pl~~t~eeid~~v~~ 845 (863)
...+..- .....++.+.+.+.- ....+.+.|+ ++||.+.. .++.+|+.+ ....|+||||+++++
T Consensus 300 ~~~~~~~~~rs~~v~~~~~p~~~--------~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~a 371 (377)
T d1vjoa_ 300 LSLHVEKEYRLPTLTTVCIPDGV--------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPA 371 (377)
T ss_dssp CCBSSCGGGBCSSEEEEECCTTC--------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred ceeecChHhcCCeEEEEECCCCC--------CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHH
Confidence 1111111 112334556554321 2566777776 55998865 247899974 355689999999999
Q ss_pred HHHHHH
Q 002941 846 LYQRLE 851 (863)
Q Consensus 846 L~~~l~ 851 (863)
|+++|+
T Consensus 372 l~~~l~ 377 (377)
T d1vjoa_ 372 LEQVLR 377 (377)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998873
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=98.92 E-value=6.1e-08 Score=105.15 Aligned_cols=205 Identities=14% Similarity=0.082 Sum_probs=116.5
Q ss_pred ccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHH
Q 002941 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 630 qg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i 707 (863)
.+.+|...+ ++++.++|+++|+++++|-+++ +|- ...-.+. ...|++++| |+++|. --+|.+..+++.
T Consensus 152 ~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g~--~pid~~~--~~~d~~~~s~~K~~~gp-~G~g~~~~~~~~ 221 (388)
T d2ch1a1 152 DSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCG--VPFYMDK--WEIDAVYTGAQKVLGAP-PGITPISISPKA 221 (388)
T ss_dssp ETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTT--BCCCTTT--TTCCEEECCCC-CCCCC-SSCEEEEECHHH
T ss_pred ccccccccc----hhhhcchhccccceeeeeeeec-ccc--cccchhc--cCceEEEEccccccCCC-CeEEEEeccHHH
Confidence 345677777 6888999999999999999995 431 1222332 356888887 567653 335667778877
Q ss_pred HHhhhcCC-ccce----------------eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHH
Q 002941 708 FDSFVGDS-KLKA----------------LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (863)
Q Consensus 708 ~~~l~~~~-~~~~----------------~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~ 770 (863)
.+...... .... ......+..+...+.+..++++.+....... .....+.........+ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~ 299 (388)
T d2ch1a1 222 LDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLEN-QIKRRIECAQILYEGL-GK 299 (388)
T ss_dssp HHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHH-HH
T ss_pred HHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhhh-hh
Confidence 76544211 0000 0011223445666777777777764433222 2222222222111111 11
Q ss_pred HhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHC-CcEEEe-----cCCEEEEe-cCCCCcHHHHHHH
Q 002941 771 ISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRP-----LGNVIYLM-CGPCSSPEVCSQL 842 (863)
Q Consensus 771 ~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~-GV~~~p-----~g~~lr~~-ppl~~t~eeid~~ 842 (863)
..-...+.+-. ....+..+.+.+.- ...++...|+++ ||.+++ .+..+|+. .....|+|+|+.+
T Consensus 300 ~~~~~~~~~~~~rs~~v~~~~~p~g~--------~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~l 371 (388)
T d2ch1a1 300 MGLDIFVKDPRHRLPTVTGIMIPKGV--------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFY 371 (388)
T ss_dssp HTCCBSSCSGGGBCTTEEEEECCTTC--------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred cccccccCCHHHhCCeEEEEECCCCC--------CHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHH
Confidence 11112222221 12345667665421 245677777764 998875 24689998 2345689999999
Q ss_pred HHHHHHHHHHHH
Q 002941 843 LLKLYQRLEEFD 854 (863)
Q Consensus 843 v~~L~~~l~~l~ 854 (863)
+++|+++|+...
T Consensus 372 l~alke~L~~~~ 383 (388)
T d2ch1a1 372 LYGFKESLKATH 383 (388)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=1.5e-07 Score=101.94 Aligned_cols=334 Identities=13% Similarity=0.065 Sum_probs=174.3
Q ss_pred ceEEeeecccccccCCCCCcHHHHHHHHHHHHhcccccCCCCCCh-------HHHHHHHHHHhhcCCCCCCeEEEeCChh
Q 002941 399 GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-------PALECAELLLQGVGKGWASRAYFSDNGS 471 (863)
Q Consensus 399 ~~ylD~~sg~~~~~lGh~~~p~V~~Ai~~q~~~~~~~~~~~~~~~-------~~~eLae~L~~~~p~~~~~~v~f~~SGS 471 (863)
+-|||..+ .+. -.+.|.+|+.+.++... .+ +...+. ...+.-++++++++-. .+.++|++++|
T Consensus 2 ~iyld~a~------~~~-~p~~v~ea~~~~~~~~~-~n-p~~~~~~~~~~~~~~~~aR~~ia~l~~~~-~~~i~~~~~~T 71 (376)
T d1eg5a_ 2 RVYFDNNA------TTR-VDDRVLEEMIVFYREKY-GN-PNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCAT 71 (376)
T ss_dssp CEECBTTT------CCC-CCHHHHHHHHHHHHTCC-CC-TTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHH
T ss_pred EEEEECcc------ccc-CCHHHHHHHHHHHHHcC-CC-CccccHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHH
Confidence 46888543 233 46889999988877541 11 111222 2223446778888754 46899999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCC
Q 002941 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (863)
Q Consensus 472 eAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p 551 (863)
+++-.++......+. . +..++.....+|+........-... +.
T Consensus 72 ~~l~~~~~~~~~~~~-------~-----------~g~~v~~~~~~~~~~~~~~~~~~~~--------------g~----- 114 (376)
T d1eg5a_ 72 ESINWILKTVAETFE-------K-----------RKRTIITTPIEHKAVLETMKYLSMK--------------GF----- 114 (376)
T ss_dssp HHHHHHHHHHHHHTT-------T-----------TCCEEEECTTSCHHHHHHHHHHHHT--------------TC-----
T ss_pred HHHHhhhhccccccc-------c-----------cCcccccccccchhhHHHHHHHHhc--------------CC-----
Confidence 998888875422110 1 1345666666666544433221000 00
Q ss_pred cccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 002941 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (863)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg 631 (863)
.+..+|..... .-| .+.+++.+. +++..|++--+ ++
T Consensus 115 ------~v~~vp~~~~~---------------------~id--------~~~l~~~i~--------~~t~lv~is~v-~~ 150 (376)
T d1eg5a_ 115 ------KVKYVPVDSRG---------------------VVK--------LEELEKLVD--------EDTFLVSIMAA-NN 150 (376)
T ss_dssp ------EEEECCBCTTS---------------------CBC--------HHHHHHHCC--------TTEEEEEEESB-CT
T ss_pred ------EEEEEcCCCCC---------------------eEC--------HHHHHHhcC--------CCceEEEEECC-cc
Confidence 01111111000 011 134444442 45677777776 88
Q ss_pred CCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeeccHHH
Q 002941 632 AGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAV 707 (863)
Q Consensus 632 ~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~~~i 707 (863)
..|.+.+ .+.+.++|+++ |+++++|.+| ++|..- .-... ..+|++++ -|.+| + --.|++..+++.
T Consensus 151 ~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q-~~g~~~--~d~~~--~~~D~~~~s~~K~~g-p-~G~~~l~~~~~~ 219 (376)
T d1eg5a_ 151 EVGTIQP----VEDVTRIVKKKNKETLVHVDAVQ-TIGKIP--FSLEK--LEVDYASFSAHKFHG-P-KGVGITYIRKGV 219 (376)
T ss_dssp TTCBBCC----HHHHHHHHHHHCTTCEEEEECTT-TTTTSC--CCCTT--TCCSEEEEEGGGGTS-C-TTCEEEEECTTS
T ss_pred ccceeee----ehhhhhhhhhcccCceeEEEeee-cccccc--ccccc--cCccceecccceeec-C-CCceeEEeccCc
Confidence 8998888 88888888666 9999999999 454332 12222 34788765 58753 2 234556665542
Q ss_pred HHhhhcCCc-cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCe--eE-eccc
Q 002941 708 FDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV--QR-VVAL 783 (863)
Q Consensus 708 ~~~l~~~~~-~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v--~~-vrg~ 783 (863)
.+...-. ............+..+...+.+........ ..........+..++ .+.+...... .. ....
T Consensus 220 --~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~ 291 (376)
T d1eg5a_ 220 --PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEE--LSEAAKHMEKLRSKL----VSGLMNLGAHIITPLEISL 291 (376)
T ss_dssp --CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHH----HHHHHTTTCEECSCTTSBC
T ss_pred --ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccc--hhhhhhhhhhhhhhh----ccccccccccccccccccc
Confidence 1111000 000000111123344444444444433211 111222222222222 2222222211 11 1112
Q ss_pred ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEecCCCCcHHHH
Q 002941 784 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 784 Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------------------------g~~lr~~ppl~~t~eei 839 (863)
.....+.+.... +..+...|.++||.++.+ ++.+|+++...+|+|||
T Consensus 292 ~~~~~~~~~~~~---------~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edi 362 (376)
T d1eg5a_ 292 PNTLSVSFPNIR---------GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEV 362 (376)
T ss_dssp TTEEEEECTTCC---------HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHH
T ss_pred cceeeeccCCCC---------HHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHH
Confidence 223334343322 566777788899887632 13699999888999999
Q ss_pred HHHHHHHHHHHH
Q 002941 840 SQLLLKLYQRLE 851 (863)
Q Consensus 840 d~~v~~L~~~l~ 851 (863)
|.++++|+++++
T Consensus 363 d~l~~~L~~iv~ 374 (376)
T d1eg5a_ 363 DYFLKKIEEILS 374 (376)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=98.86 E-value=4e-08 Score=108.25 Aligned_cols=212 Identities=11% Similarity=0.084 Sum_probs=114.1
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---chh-hhcCCCCc-EE--Eeccc
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA-DLLGCVPD-IA--CYGKL 690 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---~a~-e~~gv~PD-iv--t~sKg 690 (863)
..+..++.-| ++..|. +.+.+.+++|.++|++||+++|.||++..+...+.. +.. ......+. ++ .+||.
T Consensus 183 ~~~~il~~~P--~NPTG~-v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 259 (412)
T d1ajsa_ 183 FSIFVLHACA--HNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKN 259 (412)
T ss_dssp TCEEEEESSS--CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTT
T ss_pred CcEEEEecCC--CCCcCC-CCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccccc
Confidence 3444444456 899994 558899999999999999999999999988554421 111 11122222 22 56887
Q ss_pred cC-CCCCCceeeeccHHHHHhhhcCCccceeecccCC-CccHHHHHHHHHHHHHhc-ChhhH---HhHHHHHHHHHHHHH
Q 002941 691 LT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFK-DPQTN---HNIIPERRILRELWD 764 (863)
Q Consensus 691 Lg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~-~~~pla~AAalAaL~~l~-~~~l~---~~l~~~~~~l~~~l~ 764 (863)
++ .| +.+|++++..+..+.+..-..........++ ..+.++.+++.+.+..-. ..++. +.++++.+..++.+
T Consensus 260 ~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l- 337 (412)
T d1ajsa_ 260 FGLYN-ERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSEL- 337 (412)
T ss_dssp SCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccCCC-CCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 76 35 8999998875544433210000000112222 234444444444443110 11122 22233333333333
Q ss_pred HHHHHHHhcCCCe---eEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecCCEEEEecCCCCcHHHHH
Q 002941 765 LELIQQISSHRTV---QRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 765 ~~l~~~~~~~p~v---~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g~~lr~~ppl~~t~eeid 840 (863)
.+.++.+... ..+. ..|+|..+.+ . ...+.+.+.++||++.|++ ||.. ...++++|+
T Consensus 338 ---~~~L~~~~~~~~~~~i~~~~G~F~~~~l--s----------~~~v~~L~~e~gV~~vpg~---Ri~~-ag~~~~~i~ 398 (412)
T d1ajsa_ 338 ---RARLEALKTPGTWNHITDQIGMFSFTGL--N----------PKQVEYLINQKHIYLLPSG---RINM-CGLTTKNLD 398 (412)
T ss_dssp ---HHHHHHTTCSSCCHHHHHCCSSEEECCC--C----------HHHHHHHHHTTCEECCTTS---EEEG-GGCCTTTHH
T ss_pred ---HHHHHHhCCCCCeeeecCCCeEEEecCC--C----------HHHHHHHHHhCCEEEeCCC---eEEe-ccCCHHHHH
Confidence 3333333221 1122 2454432222 1 1223344467899998865 5541 246788999
Q ss_pred HHHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEEF 853 (863)
Q Consensus 841 ~~v~~L~~~l~~l 853 (863)
.++++|+++++++
T Consensus 399 ~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 399 YVATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998775
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.5e-09 Score=114.62 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=112.1
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc--hhh-hcCCCCcE---EEeccc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TAD-LLGCVPDI---ACYGKL 690 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~--a~e-~~gv~PDi---vt~sKg 690 (863)
...+..++..| ++..|. +.+.+.+++|.++|++|++++|.||++.+|...+... ... ..+..++. ..++|.
T Consensus 171 ~~~~~i~~~~P--~NPTG~-~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 247 (396)
T d2q7wa1 171 AGDVVLFHGCC--HNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKN 247 (396)
T ss_dssp TTCEEEEECSS--CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred cCcEEEEecCC--cCCcCe-ecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccc
Confidence 44555555566 889985 5578999999999999999999999999885433211 111 11122333 356897
Q ss_pred cC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHH-HHHHHHHHHHH-hcChhhH---HhHHHHHHHHHHHHH
Q 002941 691 LT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKW-FKDPQTN---HNIIPERRILRELWD 764 (863)
Q Consensus 691 Lg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pl-a~AAalAaL~~-l~~~~l~---~~l~~~~~~l~~~l~ 764 (863)
++ .| +.+|++++...+.+.+............+++...|. ++.++.+.+.- ....++. +.+++..+..++.+
T Consensus 248 ~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l- 325 (396)
T d2q7wa1 248 FGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLF- 325 (396)
T ss_dssp TTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHH-
T ss_pred ccccC-CCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 75 45 899999998766654432100000012233433333 33333332220 0001122 22222233333333
Q ss_pred HHHHHHHhcCCCee---E-ecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCCcHHHH
Q 002941 765 LELIQQISSHRTVQ---R-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 765 ~~l~~~~~~~p~v~---~-vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~t~eei 839 (863)
.+.+.++..-. . ....|+|..+.+. .+++.+|+ |+||++.|.+ ||.. ..+++++|
T Consensus 326 ---~~~L~~~~~~~~~~~~~~~~G~F~~~~l~-------------~e~~~~L~~e~gV~~~~g~---Ri~~-a~l~~~~i 385 (396)
T d2q7wa1 326 ---VNTLQEKGANRDFSFIIKQNGMFSFSGLT-------------KEQVLRLREEFGVYAVASG---RVNV-AGMTPDNM 385 (396)
T ss_dssp ---HHHHHHTTCCSCCTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEECCTTC---EEEG-GGCCTTTH
T ss_pred ---HHHHHHhCCCCCcceecCCCeEEEeeCCC-------------HHHHHHHHHhCCEEECCCC---EEEe-cCCCHHHH
Confidence 33333432111 1 2234666544332 12344554 6899988865 5542 24678889
Q ss_pred HHHHHHHHHHH
Q 002941 840 SQLLLKLYQRL 850 (863)
Q Consensus 840 d~~v~~L~~~l 850 (863)
+.++++|.+++
T Consensus 386 ~~~~~ai~~v~ 396 (396)
T d2q7wa1 386 APLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99998887763
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=1.3e-08 Score=110.69 Aligned_cols=207 Identities=13% Similarity=0.059 Sum_probs=118.4
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcC--CeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCCCCCC
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~P 697 (863)
.+++--+ ....|...+ ++.+.++|++|+ +++++|-+++ +|.. ..-.+.+ ..|++++| |+++|- .-
T Consensus 138 ~v~~~~~-~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~~--pid~~~~--giD~~~~s~~K~l~gP-~G 206 (382)
T d2bkwa1 138 AVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAP-AG 206 (382)
T ss_dssp EEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCC-SC
T ss_pred heeeeec-ccccccccc----chhhhhhccccccceeeeeecccc-cccc--ccccccc--CeeEEeecccccCcCC-Cc
Confidence 4444444 556788887 888888888775 9999999995 5322 2233333 36998885 899654 34
Q ss_pred ceeeeccHHHHHhhhcCCc---cce-----------------eecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHH
Q 002941 698 LAATLATNAVFDSFVGDSK---LKA-----------------LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (863)
Q Consensus 698 igav~~~~~i~~~l~~~~~---~~~-----------------~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~ 757 (863)
+|++..+++..+....... ... ......++.+....++..++|+.+.+++. ++..++.+
T Consensus 207 ~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~-~~~~~~~~ 285 (382)
T d2bkwa1 207 LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGL-HKRWDLHR 285 (382)
T ss_dssp EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhh-hhhHHHHH
Confidence 6788899998776542100 000 00011234556677888889998865543 33344444
Q ss_pred HHHHHHHHHHHHHHhcCC---CeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec------CCEEEE
Q 002941 758 ILRELWDLELIQQISSHR---TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYL 828 (863)
Q Consensus 758 ~l~~~l~~~l~~~~~~~p---~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~------g~~lr~ 828 (863)
++.+.+...+.+...... .....+.. .+..+.+.+ ...+.+.|.++||.++.+ +..+|+
T Consensus 286 ~l~~~l~~~l~~~~~~~~~~~~~~~~~s~-~v~~~~~~~-----------~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri 353 (382)
T d2bkwa1 286 EMSDWFKDSLVNGLQLTSVSRYPSNMSAH-GLTAVYVAD-----------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRI 353 (382)
T ss_dssp HHHHHHHHHHHTTTCCEESSCSSSTTBCS-SCEEEECSC-----------HHHHHHHHHHTTEECBCCCCTTTGGGEEEE
T ss_pred HHHHHHHHHhhhcccccccccCchhccCC-cEEEEcCCC-----------HHHHHHHHHHCCeEEECCCChhhcCCEEEE
Confidence 555544333321111000 00111122 234454432 345777888999998753 267888
Q ss_pred e-cCCCCcHHHHHHHHHHHHHHHHH
Q 002941 829 M-CGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 829 ~-ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
. .-...++|+++.+++.|+.....
T Consensus 354 ~~~G~~~~~e~i~~l~~~l~~i~~~ 378 (382)
T d2bkwa1 354 GHMGVTACNKNLPYMKNCFDLIKLA 378 (382)
T ss_dssp CCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 6 11344678888887777654433
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=98.84 E-value=2.6e-09 Score=117.56 Aligned_cols=210 Identities=15% Similarity=0.154 Sum_probs=112.9
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCc---c-hhhhcCCCCcE---EEecc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---T-TADLLGCVPDI---ACYGK 689 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~---~-a~e~~gv~PDi---vt~sK 689 (863)
+...+.++..| ++..|.+ .+.+.+++|.++|++||+++|.||++.+|...+.. . ........++. ..++|
T Consensus 174 ~~~~~iii~~p--~NPTG~~-~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 250 (401)
T d7aata_ 174 EKSIILLHACA--HNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp TTCEEEEESSS--CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred CceEEEEecCC--CCCcccc-CCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccc
Confidence 34455555556 8999954 57889999999999999999999999988554431 1 11112222333 36789
Q ss_pred ccC-CCCCCceeeeccHHHHHhhhcCCccceeecccC-CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHH---
Q 002941 690 LLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD--- 764 (863)
Q Consensus 690 gLg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T-~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~--- 764 (863)
.++ .| +.+|++++..++.+...............+ .....+.++++...+ .++.+.+......+.+++.+.
T Consensus 251 ~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~r 326 (401)
T d7aata_ 251 NMGLYG-ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL---NTPELRKEWLVEVKGMADRIISMR 326 (401)
T ss_dssp TSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeec-cccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 56 899999988776665432000000001111 222333333333333 233332222222222222111
Q ss_pred HHHHHHHhcCCC---eeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecCCEEEEecCCCCcHHHH
Q 002941 765 LELIQQISSHRT---VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLGNVIYLMCGPCSSPEVC 839 (863)
Q Consensus 765 ~~l~~~~~~~p~---v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g~~lr~~ppl~~t~eei 839 (863)
+.+.+.++++.. ...+. ..|+|+.+.+. .+++.+| .|+||++.|++ ||.. ..+++++|
T Consensus 327 ~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-------------~e~~~~L~~e~gV~~~pg~---Ris~-a~~~~~~i 389 (401)
T d7aata_ 327 TQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-------------PEQVERLTKEFSIYMTKDG---RISV-AGVASSNV 389 (401)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEECCTTC---EEEG-GGCCTTTH
T ss_pred HHHHHHHHHhCCCCCcceECCCCeEEEecCCC-------------HHHHHHHHHhCCEEECCCc---EEEe-ccCCHHHH
Confidence 122333444322 11122 34555544331 1234444 56899998853 6642 24788889
Q ss_pred HHHHHHHHHHH
Q 002941 840 SQLLLKLYQRL 850 (863)
Q Consensus 840 d~~v~~L~~~l 850 (863)
+.+.++|++++
T Consensus 390 ~~la~ai~~v~ 400 (401)
T d7aata_ 390 GYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 98888888765
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.79 E-value=1.4e-07 Score=101.89 Aligned_cols=309 Identities=14% Similarity=0.046 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
++-.+++.+.++...++. -+...+|+++|++.++. +.+++++||+.|+..|++.. . .++
T Consensus 12 ~~~~~~~~~~~~~~~~~~-----G~~v~~~E~~la~~~g~---~~ai~~~sgt~Al~~al~al-~---------~~~--- 70 (376)
T d1mdoa_ 12 AEELAAVKTVLDSGWITT-----GPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G---------IGE--- 70 (376)
T ss_dssp HHHHHHHHHHHHHTCCSS-----SHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T---------CCT---
T ss_pred HHHHHHHHHHHhcCCCcC-----CHHHHHHHHHHHHHHCc---CeEEEeCCHHHHHHHHHHHh-C---------CCC---
Confidence 444577777777643321 35678999999999984 68999999999999999754 1 111
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
..+||+-.-+|+.........+..+.+ .+. .|+.+
T Consensus 71 -------gdeVi~~~~~~~~~~~ai~~~g~~pv~---------------~d~-------------~~~~~---------- 105 (376)
T d1mdoa_ 71 -------GDEVITPSMTWVSTLNMIVLLGANPVM---------------VDV-------------DRDTL---------- 105 (376)
T ss_dssp -------TCEEEEESSSCHHHHHHHHHTTCEEEE---------------ECB-------------CTTTC----------
T ss_pred -------CCEEEEecccccccccchhccccceee---------------ecc-------------ccccc----------
Confidence 157888887776654444333221111 000 00000
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
.-| .+.+++.+. .++.|||+--+ .|...+ +++|.++|++||+.||
T Consensus 106 -----------~~d--------~~~l~~~i~--------~~tkaIi~~h~----~G~~~~----~~~i~~i~~~~~i~vI 150 (376)
T d1mdoa_ 106 -----------MVT--------PEHIEAAIT--------PQTKAIIPVHY----AGAPAD----LDAIYALGERYGIPVI 150 (376)
T ss_dssp -----------CBC--------HHHHHHHCC--------TTEEEECCBCG----GGCCCC----HHHHHHHHHHHTCCBC
T ss_pred -----------CCC--------HHHHHHhcC--------CCCeEEEEeCC----CCCccc----hhHHHHHHHhcCceEE
Confidence 011 245666553 34566765443 344444 8899999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEe----ccccCCCCCCceeeecc-HHHHHhhhc---CCc--------------
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLAT-NAVFDSFVG---DSK-------------- 716 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~----sKgLggG~~Pigav~~~-~~i~~~l~~---~~~-------------- 716 (863)
.|.+|+ +|-. +.-...|-. |..++ .|.++.| -.|+++++ +++++.+.. .+.
T Consensus 151 eD~a~a-~g~~---~~~~~~g~~-g~~~~Sf~~~K~l~~g--~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 223 (376)
T d1mdoa_ 151 EDAAHA-TGTS---YKGRHIGAR-GTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAP 223 (376)
T ss_dssp EECTTC-TTCE---ETTEETTSS-SEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC-----------
T ss_pred eccchh-ccCe---eCCeecccc-cCccccCCCcCCCCCC--CCCEEEEechhHHHHHHhhcccCCcccccccccccccc
Confidence 999994 5432 111111211 33444 4888754 24566654 556554421 110
Q ss_pred -cceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEec------ccceEEEE
Q 002941 717 -LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV------ALGTLCAI 789 (863)
Q Consensus 717 -~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vr------g~Gl~~~i 789 (863)
......++.+..+.+.+|.+++-|+.++ ++.++-.++..++.+ .+.+.+.+.... ..-..+.+
T Consensus 224 ~~~~~~~g~n~~~~~~~Aai~~~qL~~~~--~~~~~r~~~~~~~~~--------~L~~~~~~~~~~~~~~~~~~~~~~~~ 293 (376)
T d1mdoa_ 224 QAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQ--------AMADLPFQPLSLPSWEHIHAWHLFII 293 (376)
T ss_dssp CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHH--------HHHTSSCEECCCCSSCEECCCSCEEE
T ss_pred cccchhcccccccchhhhhhhhhhhhhhh--HHHHHHhhhhhhhhh--------hccccccccccccccccccccccccc
Confidence 0011224556677888888888887653 233333333333333 333433321110 00011111
Q ss_pred EEccCCcCCCCchHHHHHHHHHHHHCCcEEEec--------------------------CCEEEEecCCCCcHHHHHHHH
Q 002941 790 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCSQLL 843 (863)
Q Consensus 790 el~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~--------------------------g~~lr~~ppl~~t~eeid~~v 843 (863)
.+..... ......+.+.|.++||-+++. .+.+.+-....+|++|+++++
T Consensus 294 ~~~~~~~-----~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~ 368 (376)
T d1mdoa_ 294 RVDEARC-----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVI 368 (376)
T ss_dssp ECCHHHH-----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHH
T ss_pred ccccccc-----hhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHH
Confidence 1111100 001346889999999977520 134555333346999999999
Q ss_pred HHHHHHH
Q 002941 844 LKLYQRL 850 (863)
Q Consensus 844 ~~L~~~l 850 (863)
++|.+.+
T Consensus 369 ~~i~~i~ 375 (376)
T d1mdoa_ 369 TALHQIA 375 (376)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998864
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=3.7e-09 Score=116.20 Aligned_cols=210 Identities=14% Similarity=0.110 Sum_probs=111.4
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc--hh-hhcCCCCcEE---Eeccc
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TA-DLLGCVPDIA---CYGKL 690 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~--a~-e~~gv~PDiv---t~sKg 690 (863)
+..+..++..| ++..|. +.+.+.+++|.++|++||+++|.||++.+|...+... .. ...+...+++ .+||.
T Consensus 172 ~~~~~~~~~~p--~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 248 (397)
T d3tata_ 172 ARSIVLLHPCC--HNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKI 248 (397)
T ss_dssp SSCCCEECSSS--CSSSCC-CCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHH
T ss_pred cccEEEEecCC--CCCCCe-eCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccc
Confidence 34444555556 889985 5588999999999999999999999999884333211 11 1123333444 56897
Q ss_pred cC-CCCCCceeeeccHHHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHH--
Q 002941 691 LT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE-- 766 (863)
Q Consensus 691 Lg-gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~-- 766 (863)
++ .| +.+|++++.....+...............++.. +...++++...+. ++.+.....+..+.+++.+..+
T Consensus 249 ~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~ 324 (397)
T d3tata_ 249 FSLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN---DEALKASWLAEVEEMRTRILAMRQ 324 (397)
T ss_dssp HTBTT-TCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHH---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccC-ccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 36 899999876554433221000000011223322 2333333333332 3333333333333333333222
Q ss_pred -HHHHHhcCC-C--ee-EecccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCCcHHHHH
Q 002941 767 -LIQQISSHR-T--VQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCS 840 (863)
Q Consensus 767 -l~~~~~~~p-~--v~-~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~t~eeid 840 (863)
+.+.+..+. . +. .....|+|..+.+. .+++++|+ ++||++.|++ ||.. ..+++++|+
T Consensus 325 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-------------~e~~~~L~~e~~V~l~~g~---Ri~~-a~~~~~~i~ 387 (397)
T d3tata_ 325 ELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-------------AAQVDRLREEFGVYLIASG---RMCV-AGLNTANVQ 387 (397)
T ss_dssp HHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC-------------HHHHHHHTTTTCEECCSSS---CCBT-TSCCTTTHH
T ss_pred HHHHHHHHhCCCCceEEEcCCCceEEecCcC-------------HHHHHHHHHhCCEEeCCCC---EEEe-ccCCHHHHH
Confidence 222222221 1 11 12345555444332 12455565 5699998854 5542 257889999
Q ss_pred HHHHHHHHHH
Q 002941 841 QLLLKLYQRL 850 (863)
Q Consensus 841 ~~v~~L~~~l 850 (863)
.++++|++++
T Consensus 388 ~~~~ai~~v~ 397 (397)
T d3tata_ 388 RVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9998887753
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=98.76 E-value=1.9e-08 Score=109.95 Aligned_cols=206 Identities=17% Similarity=0.096 Sum_probs=109.0
Q ss_pred EEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc--hhhh-cCCCCcE---EEeccccC-
Q 002941 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADL-LGCVPDI---ACYGKLLT- 692 (863)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~--a~e~-~gv~PDi---vt~sKgLg- 692 (863)
...+++-.- ++..|. +++.+.+++|.++|++|++++|.||++.+|...+... .... .....++ ..++|..+
T Consensus 170 ~~i~~~~~p-~NPTG~-~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~ 247 (394)
T d2ay1a_ 170 DMVLLHGCC-HNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGI 247 (394)
T ss_dssp CEEEEESSS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTC
T ss_pred cEEEEeCCC-CCCCCC-CCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccC
Confidence 344444432 899995 5588899999999999999999999999985544311 1111 1111223 36788775
Q ss_pred CCCCCceeeeccHHHHHhhhcCCccceeecccCCCccHH-HHHHHHHHHHHhcChhh-------HHhHHHHHHHHHHHHH
Q 002941 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKWFKDPQT-------NHNIIPERRILRELWD 764 (863)
Q Consensus 693 gG~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pl-a~AAalAaL~~l~~~~l-------~~~l~~~~~~l~~~l~ 764 (863)
.| +.+|++++...+.+...............++...+. ..+.+...+ .++.+ .+.++++.+..++.+.
T Consensus 248 ~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~r~~l~ 323 (394)
T d2ay1a_ 248 YR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVL---TTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp GG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-ccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 899999887665554321000000011122222222 222222222 22222 2333444444455444
Q ss_pred HHHHHHHhcCCCeeEe-cccceEEEEEEccCCcCCCCchHHHHHHHHHHH-HCCcEEEecCCEEEEecCCCCcHHHHHHH
Q 002941 765 LELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLGNVIYLMCGPCSSPEVCSQL 842 (863)
Q Consensus 765 ~~l~~~~~~~p~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~-e~GV~~~p~g~~lr~~ppl~~t~eeid~~ 842 (863)
+.+.+..... ....+ ..-|+|..+.+. .+++++|+ ++||++.|++ ||.. ..+++++|+.+
T Consensus 324 ~~L~~~~~~~-~~~~~~~~~G~F~~~~ls-------------~~~~~~L~~~~~V~~~~g~---Ri~~-a~l~~~~i~~l 385 (394)
T d2ay1a_ 324 GELRDLSGSD-RFGFVAEHRGMFSRLGAT-------------PEQVKRIKEEFGIYMVGDS---RINI-AGLNDNTIPIL 385 (394)
T ss_dssp HHHHHHHTSS-TTTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEECCTTC---EEEG-GGCCTTTHHHH
T ss_pred HHHHHhCCCC-ceeeECCCceeEEecCcC-------------HHHHHHHHHhCCEEecCCC---EEEe-cCCCHHHHHHH
Confidence 4443332111 11111 234666554332 12445554 7799998853 5542 25788889888
Q ss_pred HHHHHHH
Q 002941 843 LLKLYQR 849 (863)
Q Consensus 843 v~~L~~~ 849 (863)
.++|.++
T Consensus 386 ~~ai~~v 392 (394)
T d2ay1a_ 386 ARAIIEV 392 (394)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877664
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.72 E-value=9.9e-07 Score=96.13 Aligned_cols=313 Identities=12% Similarity=0.068 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
.+-.+++.+.++...... ..-+...++++++++.++. ..+++++||+.|++.|++.. . . ++
T Consensus 13 ~~~~~~~~~~l~~g~~~~---~~g~~v~~fE~~~a~~~g~---~~~v~~~SGt~Al~lal~~l-~-------~--~~--- 73 (384)
T d1b9ha_ 13 DAERNGLVRALEQGQWWR---MGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G-------V--GP--- 73 (384)
T ss_dssp HHHHHHHHHHHHTSCCBT---TTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T-------C--CT---
T ss_pred HHHHHHHHHHHHcCCeee---cCCHHHHHHHHHHHHHHCc---CeEEEeCCHHHHHHHHHHHc-C-------C--CC---
Confidence 445678888887653211 1236788999999999984 68999999999999999854 1 0 11
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
..+||+-.-+|.......+..+..+.| .+. .|..+
T Consensus 74 -------gdeVi~p~~t~~a~~~ai~~~g~~p~~---------------~d~-------------~~~~~---------- 108 (384)
T d1b9ha_ 74 -------GTEVIVPAFTFISSSQAAQRLGAVTVP---------------VDV-------------DAATY---------- 108 (384)
T ss_dssp -------TCEEEEESSSCTHHHHHHHHTTCEEEE---------------ECB-------------CTTTC----------
T ss_pred -------CCEEEEecccccccccccccccccccc---------------ccc-------------ccccc----------
Confidence 156888777765543333322211111 000 00000
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
.-| .+.+++.+ ..++.+|++..+ .| .... +.+++++|++||+.+|
T Consensus 109 -----------~~d--------~~~~~~~i--------~~~tk~i~~~~~-~g---~~~d----~~~i~~~~~~~~i~li 153 (384)
T d1b9ha_ 109 -----------NLD--------PEAVAAAV--------TPRTKVIMPVHM-AG---LMAD----MDALAKISADTGVPLL 153 (384)
T ss_dssp -----------CBC--------HHHHHHHC--------CTTEEEECCBCG-GG---CCCC----HHHHHHHHHHHTCCBC
T ss_pred -----------ccc--------hhhhcccc--------cccccccccccc-cc---cccc----cccchhhhhhhhhhhh
Confidence 011 12344433 245667776654 43 3332 7899999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEe----ccccCCCCCCceeeec-cHHHHHhhh---cCC--------ccceeec
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLA-TNAVFDSFV---GDS--------KLKALLH 722 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~----sKgLggG~~Pigav~~-~~~i~~~l~---~~~--------~~~~~~~ 722 (863)
-|-+|+ +|-. +.-...|-.-|+.++ .|.++.|- -|++++ ++++++.+. ... +......
T Consensus 154 eD~a~a-~ga~---~~g~~~g~~g~~~~~Sf~~~K~i~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (384)
T d1b9ha_ 154 QDAAHA-HGAR---WQGKRVGELDSIATFSFQNGKLMTAGE--GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIA 227 (384)
T ss_dssp EECTTC-TTCE---ETTEEGGGSSSCEEEECCTTSSSCSSS--CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSC
T ss_pred hhhcee-cccc---cCCEecCcccccceecccccccccccc--cchhhhhhHHHHHHHHHHHhcCCCCcccccccccccc
Confidence 999994 5322 222233444576665 58887552 455665 456655432 110 0011124
Q ss_pred ccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe-------cccceEEEEEEccCC
Q 002941 723 GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-------VALGTLCAIELQAAG 795 (863)
Q Consensus 723 ~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v-------rg~Gl~~~iel~~~~ 795 (863)
|+.|-.+++.+|.+++-|+.+++ +.++-+++.+++. +.+++.+.+... +....+..+.+....
T Consensus 228 G~n~rms~l~Aaig~~qL~~ld~--~~~~R~~~~~~y~--------~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (384)
T d1b9ha_ 228 GSNMRLNEFSASVLRAQLARLDE--QIAVRDERWTLLS--------RLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT 297 (384)
T ss_dssp CCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHHHHHHH--------HHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC
T ss_pred ccccccccchhhhhhhhhhhccc--chhhhhhhhhhhh--------hhhhcccccccccccccccccccccccceecccc
Confidence 55667789998888888876532 2222233333333 334444433211 112223334333211
Q ss_pred cCCCCchHHHHHHHHHHHHCCcEEEec-------------C---------------------CEEEEecCCCCc-HHHHH
Q 002941 796 CNAGYGSLYAASLLKKLREDGVYMRPL-------------G---------------------NVIYLMCGPCSS-PEVCS 840 (863)
Q Consensus 796 ~~~~~~~~~~~~l~~~l~e~GV~~~p~-------------g---------------------~~lr~~ppl~~t-~eeid 840 (863)
......+.+.|.++||-+++. + +.+.+-....+| ++|++
T Consensus 298 ------~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~ 371 (384)
T d1b9ha_ 298 ------EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELH 371 (384)
T ss_dssp ------HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHH
T ss_pred ------cccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHH
Confidence 123457899999999987531 0 234443233456 67999
Q ss_pred HHHHHHHHHHHH
Q 002941 841 QLLLKLYQRLEE 852 (863)
Q Consensus 841 ~~v~~L~~~l~~ 852 (863)
.+++.|.+++.+
T Consensus 372 ~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 372 ATAEIIADAVAR 383 (384)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=98.69 E-value=2.4e-07 Score=101.93 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=115.6
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcc-------hhhhcCCCCcEE---Eec
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-------TADLLGCVPDIA---CYG 688 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~-------a~e~~gv~PDiv---t~s 688 (863)
...++++-+- ++..|.. .+++.+++|.++|++|++++|.||++.+|...+... ..+..+..+..+ .+|
T Consensus 176 ~~~~i~i~~P-~NPTG~~-~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 253 (412)
T d1yaaa_ 176 GSIFVLHSCA-HNPTGLD-PTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA 253 (412)
T ss_dssp TCEEEEECSS-CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred ceEEEEecCC-CCCcccc-CCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecC
Confidence 3444444433 8999955 578899999999999999999999999885544311 112233444444 569
Q ss_pred cccC-CCCCCceeeeccHHHHHhhhcCC-----ccceeecccCCCccHHHHHHHHHHHHHhcChhh-------HHhHHHH
Q 002941 689 KLLT-GGVIPLAATLATNAVFDSFVGDS-----KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQT-------NHNIIPE 755 (863)
Q Consensus 689 KgLg-gG~~Pigav~~~~~i~~~l~~~~-----~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l-------~~~l~~~ 755 (863)
|.++ .| +++|++++..++.+.+.... ...........+.+.++++++...++ ++.+ ++.+++.
T Consensus 254 K~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~ 329 (412)
T d1yaaa_ 254 KNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLE---TPELTEQWHKDMVTMSSR 329 (412)
T ss_dssp TTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHH
T ss_pred CccccCc-CceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhc---ChHHHHHHHHHHHHHHHH
Confidence 9887 56 89999998755433221000 00001112233445556665555554 3222 2233333
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CeeEeccc-ceEEEEEEccCCcCCCCchHHHHHHHHHH-HHCCcEEEecCCEEEEecCC
Q 002941 756 RRILRELWDLELIQQISSHR-TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPLGNVIYLMCGP 832 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p-~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l-~e~GV~~~p~g~~lr~~ppl 832 (863)
.+..++.+.+.+.+.. .+ .+..+... |+|..+.+. .+++++| .++||++.|++ ||.. .
T Consensus 330 ~~~~r~~l~~~L~~~g--~~~~~~~~~~~gG~F~~~~ls-------------~e~~~~L~~e~~V~~~~g~---Ris~-~ 390 (412)
T d1yaaa_ 330 ITKMRHALRDHLVKLG--TPGNWDHIVNQCGMFSFTGLT-------------PQMVKRLEETHAVYLVASG---RASI-A 390 (412)
T ss_dssp HHHHHHHHHHHHHHHT--CSSCCTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEECCTTS---EEEG-G
T ss_pred HHHHHHHHHHHHHHhC--CCCCCceeCCCceEEEecCcC-------------HHHHHHHHHhCCEEECCCC---EEEe-c
Confidence 3334443333332221 11 12223333 444332221 1234445 57899887753 5542 1
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 002941 833 CSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 833 ~~t~eeid~~v~~L~~~l~~ 852 (863)
.++++.|+.+.++|.++++.
T Consensus 391 g~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 391 GLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp GCCTTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 36788899999998887764
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.66 E-value=1.9e-06 Score=96.63 Aligned_cols=218 Identities=11% Similarity=0.003 Sum_probs=120.4
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCC-CCcEEEe--ccccCCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGG 694 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt~--sKgLggG 694 (863)
..+.+|+.--- ....|.+=| +++|.++|++||+.|.+|-++.|+...-.-.-.-..|+ ..|-+|+ -|.+..-
T Consensus 234 ~~p~~VvataG-tt~~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P 308 (476)
T d1js3a_ 234 LIPFFVVATLG-TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN 308 (476)
T ss_dssp CEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred CCcEEEeecCC-Cccceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccC
Confidence 34455555443 455677766 99999999999999999999877643332222222355 4799988 4988766
Q ss_pred CCCceeeeccHHH--HHhhhcCCcc--------ce--eecccCC-CccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHH
Q 002941 695 VIPLAATLATNAV--FDSFVGDSKL--------KA--LLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (863)
Q Consensus 695 ~~Pigav~~~~~i--~~~l~~~~~~--------~~--~~~~~T~-~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~ 761 (863)
++.|+++.++.- ...+...... .. -....|. .+.+.......++++.+-..++.+.+ +..-.+.+
T Consensus 309 -~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i-~~~~~lA~ 386 (476)
T d1js3a_ 309 -FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYI-RKHVQLSH 386 (476)
T ss_dssp -SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred -CcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHH-HHHHHHHH
Confidence 577788877432 2222111000 00 0000111 11222233345556655444433333 22223333
Q ss_pred HHHHHHHHHHhcCCCeeEec-ccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCC-cEEEec---C-CEEEEec-CCCC
Q 002941 762 LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG-VYMRPL---G-NVIYLMC-GPCS 834 (863)
Q Consensus 762 ~l~~~l~~~~~~~p~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~G-V~~~p~---g-~~lr~~p-pl~~ 834 (863)
++ .+.++++|.+.-+. ..=.++.+.+... .....++.+++.+.| +++.+. | ..+|++. +..+
T Consensus 387 ~l----~~~l~~~~~fel~~~p~l~iV~Fr~~~~-------d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~T 455 (476)
T d1js3a_ 387 EF----EAFVLQDPRFEVCAEVTLGLVCFRLKGS-------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKV 455 (476)
T ss_dssp HH----HHHHHHCTTEEECSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTC
T ss_pred HH----HHHHhcCCCeEEECCCceEEEEEEccCC-------hHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCC
Confidence 33 33445566443221 1122444555432 134567788888888 444432 2 3677754 3567
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 002941 835 SPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 835 t~eeid~~v~~L~~~l~~l 853 (863)
+++||+.+++.|++..+++
T Consensus 456 t~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 456 ESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988775
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=1.8e-06 Score=92.82 Aligned_cols=206 Identities=16% Similarity=0.040 Sum_probs=122.8
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcC--CeEEEecccccccccCCcchhhhcCCCCcEEEec--cccCC
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG 693 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgLgg 693 (863)
+-++.+..|. +.|++.+ .+++.++|++|+ +++++|-|++ +|-. ..-.+.++ .|++++| |+|+|
T Consensus 122 ~~v~~~h~eT----stG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~--~i~~d~~~--iD~~~~~sqK~l~g 188 (348)
T d1iuga_ 122 AGLLLVHSET----STGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMC 188 (348)
T ss_dssp SEEEEESEET----TTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCC
T ss_pred CeeEEEecch----hhhhhcc----HHHHHHHHHhhhccceeechhhhc-cccc--cccccccc--CCEEEeccccceec
Confidence 3455555555 3577777 899999999986 7888998884 5322 23344444 5888775 99965
Q ss_pred CCCCceeeeccHHHHHhhhcCCcc-------ceeecccC-CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHH
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKL-------KALLHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~-------~~~~~~~T-~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~ 765 (863)
= --+|.++.+++..+.+...+.. .....+.| |+.+...+.+..++|+.+.++ ..++. +..+.....+..
T Consensus 189 p-pG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~ 265 (348)
T d1iuga_ 189 P-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYG 265 (348)
T ss_dssp C-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHH
T ss_pred C-CceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHhh
Confidence 2 2357788999988765432110 00011222 334445667777888877543 22232 222222332222
Q ss_pred HHHHHHhcCCC--eeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec-----CCEEEEecCC-CCcHH
Q 002941 766 ELIQQISSHRT--VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGP-CSSPE 837 (863)
Q Consensus 766 ~l~~~~~~~p~--v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~-----g~~lr~~ppl-~~t~e 837 (863)
..+.... ..+-+. ..+.++.+.+.- ....+.+.|.++|+.+.++ |..+||. .+ ..+++
T Consensus 266 ----~~~~~gl~~~~~~~s-~~v~~~~~P~g~--------~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg-~mG~~~~~ 331 (348)
T d1iuga_ 266 ----VGEEGGLRPVPKRFS-PAVAAFYLPEGV--------PYARVKEAFAQRGAVIAGGQGPLKGKVFRLS-LMGAYDRY 331 (348)
T ss_dssp ----HHHHTTCEESCSSBC-TTCEEEECCTTC--------CHHHHHHHHHTTTEECEECCGGGTTTEEEEC-CCSSCCHH
T ss_pred ----hhhhhhhccChhhcC-CeEEEEECCCCC--------CHHHHHHHHHHCCeEEEcCccccCCCEEEEe-CCCCCCHH
Confidence 2222111 111122 234566664321 1457888899999988764 3678886 55 57999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002941 838 VCSQLLLKLYQRLEEF 853 (863)
Q Consensus 838 eid~~v~~L~~~l~~l 853 (863)
|++.++++|+++|+++
T Consensus 332 d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 332 EALGVAGMFREVLEEI 347 (348)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.63 E-value=3.5e-06 Score=90.96 Aligned_cols=312 Identities=11% Similarity=0.062 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCC
Q 002941 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (863)
Q Consensus 419 p~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~ 498 (863)
.+-.+++.+.++...++ .-+...+|+++|++.+| .+.+++++||+.|+..|++.. . ...|.
T Consensus 12 ~~~~~~v~~~l~~~~~~-----~G~~v~~fE~~~~~~~g---~k~ai~~~Sgt~Al~~al~al-~-------~~~~~--- 72 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT-----QGKRSLLFEEALCEFLG---VKHALVFNSATSALLTLYRNF-S-------EFSAD--- 72 (371)
T ss_dssp HHHHHHHHHHHTSSCCS-----SSHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHS-S-------CCCTT---
T ss_pred HHHHHHHHHHHcCCCcc-----CCHHHHHHHHHHHHHHC---cCeEEEEecHHHHHHHHHHHh-c-------ccCCC---
Confidence 34456788887653221 24678899999999998 468999999999999999865 1 10110
Q ss_pred CccccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhcccccc
Q 002941 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (863)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (863)
+..||+-.-+|.......+..+..+.| .|.. ++.
T Consensus 73 -------~~eVi~p~~t~~a~~~ai~~~G~~pv~---------------vDi~-------------~~~----------- 106 (371)
T d2fnua1 73 -------RNEIITTPISFVATANMLLESGYTPVF---------------AGIK-------------NDG----------- 106 (371)
T ss_dssp -------SCEEEECSSSCTHHHHHHHHTTCEEEE---------------CCBC-------------TTS-----------
T ss_pred -------CCeeecccccccccceeeeccCccccc---------------cccc-------------ccc-----------
Confidence 246887666655433222222211111 1100 000
Q ss_pred ccccccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEE
Q 002941 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (863)
Q Consensus 579 ~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI 658 (863)
..+. ..+++. ..+ ++-||++=-+ . |.... +++++++|+++|+.||
T Consensus 107 -----------~~~~--------~~~~~~-------~~~-~t~avi~vh~-~---G~~~~----~~~i~~~~~~~~i~lI 151 (371)
T d2fnua1 107 -----------NIDE--------LALEKL-------INE-RTKAIVSVDY-A---GKSVE----VESVQKLCKKHSLSFL 151 (371)
T ss_dssp -----------SBCG--------GGSGGG-------CCT-TEEEEEEECG-G---GCCCC----HHHHHHHHHHHTCEEE
T ss_pred -----------cccc--------hhhhhh-------ccc-hhhccccccc-c---ccccc----cccccccccccchhhc
Confidence 0000 001111 123 4444443333 3 34443 7899999999999999
Q ss_pred EecccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeeecc-HHHHHhhhc---CCcc-------ceeecc
Q 002941 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL-------KALLHG 723 (863)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~~~-~~i~~~l~~---~~~~-------~~~~~~ 723 (863)
-|-+|+ +| ..+.-...|-..|+.++| |.+++|- -|+++++ +++++.+.. .+.. .....|
T Consensus 152 EDaaqa-~G---a~~~~~~~G~~g~~~~~Sf~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G 225 (371)
T d2fnua1 152 SDSSHA-LG---SEYQNKKVGGFALASVFSFHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIG 225 (371)
T ss_dssp EECTTC-TT---CEETTEETTSSSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCC
T ss_pred cchhhc-cC---ceeccccCCcccccccccccccccccccc--ceEEEeechhhhhhccccccccccccccccccccccc
Confidence 999995 53 333344455667887774 8776541 3556654 667665542 1110 011235
Q ss_pred cCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe------cccceEEEEEEccCCcC
Q 002941 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV------VALGTLCAIELQAAGCN 797 (863)
Q Consensus 724 ~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v------rg~Gl~~~iel~~~~~~ 797 (863)
+.+..+.+.+|.+++-|+.+++ +.++-.++..+ ..+.+.+.+.+... ...-..+.+.+....
T Consensus 226 ~n~r~sel~Aaigl~qL~~l~~--~~~~R~~~~~~--------y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 293 (371)
T d2fnua1 226 HNFRLNEIQSALGLSQLKKAPF--LMQKREEAALT--------YDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF-- 293 (371)
T ss_dssp CBCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHH--------HHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG--
T ss_pred ccccccchhhhhhhhhhhhccc--hhhhhhhhhhh--------hcccccccccccccccccccccccccccccccccc--
Confidence 6667789999999988876642 22222222222 23445556554322 112233344443321
Q ss_pred CCCchHHHHHHHHHHHHCCcEEEec----------------C----------CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 798 AGYGSLYAASLLKKLREDGVYMRPL----------------G----------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 798 ~~~~~~~~~~l~~~l~e~GV~~~p~----------------g----------~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
......+.+.|.++||-+++. + ..+.+-....+|++|++.+++.+.+.++
T Consensus 294 ----~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~ 369 (371)
T d2fnua1 294 ----FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 369 (371)
T ss_dssp ----GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHH
Confidence 012456888999999977520 1 2444422234699999999999998886
Q ss_pred H
Q 002941 852 E 852 (863)
Q Consensus 852 ~ 852 (863)
.
T Consensus 370 ~ 370 (371)
T d2fnua1 370 S 370 (371)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.63 E-value=5.5e-08 Score=97.91 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCCEEEEECCCCCcHHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (863)
..+.+.+.++.+.+.| |++||++..++... ........ --+++|+....-.+.++...++
T Consensus 95 ~~~~l~~~l~~l~~~~-------------D~viiD~~~~~~~~------~~~~l~~a-d~v~~v~~~~~~~~~~~~~~~~ 154 (232)
T d1hyqa_ 95 NPEKLEDVLTQIMEST-------------DILLLDAPAGLERS------AVIAIAAA-QELLLVVNPEISSITDGLKTKI 154 (232)
T ss_dssp CHHHHHHHHHHHHHTC-------------SEEEEECCSSSSHH------HHHHHHHS-SEEEEEECSSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhhcc-------------ceeeecccccccch------hHHHhhhh-heeeeeccccccchhhhhhhhh
Confidence 4566777777777776 99999997655322 22222222 2577888888778888888888
Q ss_pred HHHhCCCcEEEEEEcCCCCCCH----HHHHHhhcCCCCeee-cCCCCC
Q 002941 273 SLKLRGYDVVAVVFEDHGLVNE----VPLMSYLRNRVPVLV-LPPLPQ 315 (863)
Q Consensus 273 ~~~~~~~~v~gvi~n~~~~~~~----~~~~~~~~~~~pvl~-~p~~~~ 315 (863)
.+++.+.++.++|+|+...... ..++++ -++|+++ ||+.+.
T Consensus 155 ~~~~~~~~~~~iv~N~~~~~~~~~~~~~i~~~--~~~~~~~~IP~d~~ 200 (232)
T d1hyqa_ 155 VAERLGTKVLGVVVNRITTLGIEMAKNEIEAI--LEAKVIGLIPEDPE 200 (232)
T ss_dssp HHHHHTCEEEEEEEEEECTTTHHHHHHHHHHH--TTSCEEEEEECCHH
T ss_pred hhhhcccccccccccccccccccchhhhHHhh--cCCeEEEECCCCHH
Confidence 8888899999999998754433 334454 4899999 998654
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.55 E-value=1.3e-07 Score=95.08 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHHHccccccccccccCCCceEEEeCCCcccccCCCCCcHhHHhhhcCCC-EEEEECCCCCcHHHHHHHH
Q 002941 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAY 271 (863)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lvEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~ 271 (863)
..+.+.+.+..+.+.| |++||++.+++... ...... .+. ||+|+.....++.++...+
T Consensus 97 ~~~~~~~~~~~l~~~~-------------d~IiiD~~~~~~~~------~~~~l~--~aD~viiv~~~~~~s~~~~~~~~ 155 (237)
T d1g3qa_ 97 DPRKLPEVIKSLKDKF-------------DFILIDCPAGLQLD------AMSAML--SGEEALLVTNPEISCLTDTMKVG 155 (237)
T ss_dssp CGGGHHHHHHTTGGGC-------------SEEEEECCSSSSHH------HHHHHT--TCSEEEEEECSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC-------------CEEEEccccccccc------chhhhh--hhhcccccccccceecchhhHHH
Confidence 4455555555555555 99999997654322 122211 233 6788888888999999999
Q ss_pred HHHHhCCCcEEEEEEcCCCCC----CHHHHHHhhcCCCCeee-cCCCCCC
Q 002941 272 ESLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLV-LPPLPQD 316 (863)
Q Consensus 272 ~~~~~~~~~v~gvi~n~~~~~----~~~~~~~~~~~~~pvl~-~p~~~~~ 316 (863)
+.+++.++++.|+|+|++... .....+++ .++|+++ ||+...+
T Consensus 156 ~~~~~~~~~~~giv~N~~~~~~~~~~~~~~~~~--~~~~~~~~IP~d~~v 203 (237)
T d1g3qa_ 156 IVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDV--MEVPLLAVIPEDPAI 203 (237)
T ss_dssp HHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHH--HCSCEEEEEECCHHH
T ss_pred HHHhhhhhhhhhhhhcccccccchhhhHHHHhh--cCceEEEEeCCCHHH
Confidence 999999999999999987432 23344445 4799999 9976543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.52 E-value=1.1e-05 Score=86.77 Aligned_cols=219 Identities=13% Similarity=0.065 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcccccCCCCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCcc
Q 002941 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (863)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~ 501 (863)
.+++.+.+++...++ .-+...+|++++++.++. ..+++++|||.|+..||+.. . .++
T Consensus 4 ~~~~~~~l~~~~~~~----~G~~~~~fE~~~~~~~~~---~~~~~~~SgT~Al~lal~~l-~---------~~~------ 60 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAP----LGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVA-G---------VKQ------ 60 (374)
T ss_dssp HHHHHHHHHHTTTSC----TTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T---------CCT------
T ss_pred HHHHHHHHhcCCcCC----CCHHHHHHHHHHHHHHCc---CeEEEeCCHHHHHHHHHHHc-C---------CCC------
Confidence 467777777643221 136688999999999984 68999999999999999865 2 111
Q ss_pred ccccccEEEEecCCCccCccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccc
Q 002941 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC 581 (863)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 581 (863)
..+||+-.-+|-........++..+. |.|.. |+..
T Consensus 61 ----gdeVi~p~~t~~a~~~~~~~~g~~pv---------------~~Di~-------------~~~~------------- 95 (374)
T d1o69a_ 61 ----DDIVLASSFTFIASVAPICYLKAKPV---------------FIDCD-------------ETYN------------- 95 (374)
T ss_dssp ----TCEEEEESSSCGGGTHHHHHTTCEEE---------------EECBC-------------TTSS-------------
T ss_pred ----cCEEEeCCcchHhhHHHHhhccceeE---------------ecccc-------------cccc-------------
Confidence 15677766655433222222211110 11100 0000
Q ss_pred cccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEec
Q 002941 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (863)
Q Consensus 582 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DE 661 (863)
.. .. . ...+.... .+...|.+++.. . |.... +.++.++|+++|+.||-|-
T Consensus 96 ---------~~--~~--~-~~~~~~~~-------~~~~~aii~~~~--~---G~~~d----~~~i~~~~~~~~i~vIED~ 145 (374)
T d1o69a_ 96 ---------ID--VD--L-LKLAIKEC-------EKKPKALILTHL--Y---GNAAK----MDEIVEICKENDIVLIEDA 145 (374)
T ss_dssp ---------BC--HH--H-HHHHHHHC-------SSCCCEEEEECG--G---GCCCC----HHHHHHHHHHTTCEEEEEC
T ss_pred ---------cc--cc--c-ccccchhc-------cccccccccccc--c---cchhh----hHHHHHHhhccCcchhhhh
Confidence 00 00 0 01111111 233344444444 2 32332 8999999999999999999
Q ss_pred ccccccccCCcchhhhcCCCCcEEEec----cccCCCCCCceeee-ccHHHHHhhhc---CCc-----cceeecccCCCc
Q 002941 662 VFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATL-ATNAVFDSFVG---DSK-----LKALLHGHSYSA 728 (863)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDivt~s----KgLggG~~Pigav~-~~~~i~~~l~~---~~~-----~~~~~~~~T~~~ 728 (863)
+|+ ||- .+.-...|-..|+.||| |.++.|- -|+++ -++++++.+.. ... ......|+.|-.
T Consensus 146 a~a-~g~---~~~~~~~G~~gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm 219 (374)
T d1o69a_ 146 AEA-LGS---FYKNKALGTFGEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRL 219 (374)
T ss_dssp TTC-TTC---EETTEETTSSSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBC
T ss_pred hhh-hcc---eECCeecCCCCceEEEeccCcccccccc--ceeehhhhHHHHHhhccccccccccccccccccCCccccc
Confidence 995 532 22223344456988874 8775331 23444 45777776531 111 111123566778
Q ss_pred cHHHHHHHHHHHHHhc
Q 002941 729 HALGCAAAAKSIKWFK 744 (863)
Q Consensus 729 ~pla~AAalAaL~~l~ 744 (863)
+.+.+|.+++-|+.++
T Consensus 220 ~ei~Aaig~~qL~~l~ 235 (374)
T d1o69a_ 220 SNVLGAIGVAQMEVLE 235 (374)
T ss_dssp CHHHHHHHHHHHTTHH
T ss_pred cchhhhhhHHHHhhhh
Confidence 8999999999888764
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=1.1e-05 Score=89.64 Aligned_cols=219 Identities=12% Similarity=0.033 Sum_probs=116.8
Q ss_pred cEEEEEEccccccCCCceeCCHHHHHHHHH------HHHHcCCeEEEecccccccccCCcchhhh----cCC-CCcEEEe
Q 002941 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVK------ECQNRKIPVIFDEVFTGFWRLGVETTADL----LGC-VPDIACY 687 (863)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fL~~Lre------lc~~~gilLI~DEV~TGfGRtG~~~a~e~----~gv-~PDivt~ 687 (863)
++++|++--. ....|.+-| ++++.+ +|+++|+++.+|-++.|+-- .|...+ +++ ..|.+++
T Consensus 199 ~t~~Vv~t~g-tt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~---p~~~~~~~~~~~~~~aDSi~~ 270 (450)
T d1pmma_ 199 NTIGVVPTFG-VTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLA---PFVAPDIVWDFRLPRVKSISA 270 (450)
T ss_dssp TEEEEECBBS-CTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH---HHHCTTCCCSTTSTTEEEEEE
T ss_pred CceEEEeeee-eccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhcccee---eeechhhhhhhcccceeEeec
Confidence 3444444332 345565554 343333 36778999999999976521 111111 133 4688888
Q ss_pred c--cccCCCCCCceeeeccHHHHH--hhhcCCcc-ceeecccC--CCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHH
Q 002941 688 G--KLLTGGVIPLAATLATNAVFD--SFVGDSKL-KALLHGHS--YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (863)
Q Consensus 688 s--KgLggG~~Pigav~~~~~i~~--~l~~~~~~-~~~~~~~T--~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~ 760 (863)
+ |.+.+. ...|+++.+.+-.. .+.....+ ..-....| ++.+.....+..+++..+-.+++ +++.+....+.
T Consensus 271 s~HK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~-~~~~~~~~~la 348 (450)
T d1pmma_ 271 SGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGY-TKVQNASYQVA 348 (450)
T ss_dssp ETTTTTCCC-SSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred ChhhccCCC-CCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHH-HHHHHHHHHHH
Confidence 5 655544 67888888754321 11100000 00011112 22233344445666666544443 23334444444
Q ss_pred HHHHHHHHHHHhcCCCeeEe---c-ccc-eEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ecC----CEEE
Q 002941 761 ELWDLELIQQISSHRTVQRV---V-ALG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PLG----NVIY 827 (863)
Q Consensus 761 ~~l~~~l~~~~~~~p~v~~v---r-g~G-l~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g----~~lr 827 (863)
++| .+.+++.+.+.-+ . ..+ ..+.+.+.+.. ...+ ....+...|+++|.++. |.. ..+|
T Consensus 349 ~~l----~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~-~~~~---~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lR 420 (450)
T d1pmma_ 349 AYL----ADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE-DPGY---TLYDLSERLRLRGWQVPAFTLGGEATDIVVMR 420 (450)
T ss_dssp HHH----HHHHHTTSCEEEEEECCTTTBSSEEEEEECTTC-CCSS---CHHHHHHHHHTTTCBCCEEECCTTCTTCEEEE
T ss_pred HHH----HHHHHhCCCeEEEeCCCCCCceEEEEEecCCcc-cCCC---CHHHHHHHHHHcCCeeeccCcCCCcCCcEEEE
Confidence 443 3344555543211 1 122 24566665432 1111 24568899999997663 211 4688
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+.....+|++++|.+++.|+++++.+.+
T Consensus 421 vvv~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 421 IMCRRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8877778999999999999999888763
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.48 E-value=3.5e-06 Score=91.85 Aligned_cols=285 Identities=13% Similarity=0.111 Sum_probs=166.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..+|-...|+++|+++-+. +.++.++||-.|+.+++....+ .| ..||+....|+|.
T Consensus 64 ~~nPt~~~LE~~la~LEgg---~~a~~~sSGMaAi~~~l~~l~~---------~G------------d~iv~~~~~Yg~t 119 (398)
T d1qgna_ 64 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALVP---------AG------------GHIVTTTDCYRKT 119 (398)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHSC---------SS------------CEEEEETTSCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---ceEEEecCcchHHHHHHhhccc---------cc------------ccccccccccchh
Confidence 4578889999999998763 6789999999999888864421 12 5789998888776
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
.......- ..++.. +..+. ..+ .
T Consensus 120 ~~l~~~~~--------------~~~gi~-----------~~~~~--------------------------~~~--~---- 142 (398)
T d1qgna_ 120 RIFIETIL--------------PKMGIT-----------ATVID--------------------------PAD--V---- 142 (398)
T ss_dssp HHHHHHTG--------------GGGTCE-----------EEEEC--------------------------SSC--H----
T ss_pred hhhhcccc--------------cccccc-----------ccccc--------------------------ccc--h----
Confidence 43221110 000000 00000 011 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
...++.+. ..++.+|++|.. .+...-++ + ++++.++|+++|+++|+|.... ....+.-+.
T Consensus 143 --~~~~~~~~-------~~~t~~v~~Esp-sNP~l~v~-D---i~~ia~ia~~~g~~~vVDnT~a------tP~~~~Pl~ 202 (398)
T d1qgna_ 143 --GALELALN-------QKKVNLFFTESP-TNPFLRCV-D---IELVSKLCHEKGALVCIDGTFA------TPLNQKALA 202 (398)
T ss_dssp --HHHHHHHH-------HSCEEEEEEESS-CTTTCCCC-C---HHHHHHHHHHTTCEEEEECTTT------CTTTCCTTT
T ss_pred --hhhhhhhc-------cccceEEEccCc-cccccccc-h---HHHHHHHHhhcCCEEEecceee------ccccCCchh
Confidence 11112221 246789999996 66654444 4 9999999999999999998763 223344444
Q ss_pred CCCcEEEe--ccccCC-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIACY--GKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt~--sKgLgg-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
.-.|||+- .|-++| |=.-.|++..+++++..+... ....--..+|..|...+-.|+-|.- ..++..+++
T Consensus 203 ~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~------~~~~G~~l~p~~a~ll~rgl~TL~l--Rm~~~~~nA 274 (398)
T d1qgna_ 203 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL------HHILGGALNPNAAYLIIRGMKTLHL--RVQQQNSTA 274 (398)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHGGGHHH--HHHHHHHHH
T ss_pred hCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh------cccCCCcCCHHHHHHHHhcchHHHH--HHHHHHHHH
Confidence 45799865 588864 224456778888888776531 1111123467777766666554421 123444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEccCCcCCCCchHHHHHHHHHHH--HCC
Q 002941 757 RILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR--EDG 816 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~--e~G 816 (863)
..+. +.+++||.|..|. |.|.++.+++.... ..+.+|.+.|. ..|
T Consensus 275 ~~lA--------~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~-------~~a~~f~~~L~l~~~a 339 (398)
T d1qgna_ 275 LRMA--------EILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-------LTTAKFVDALKIPYIA 339 (398)
T ss_dssp HHHH--------HHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-------HHHHHHHHHCSSSEEC
T ss_pred HHHH--------HHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCH-------HHHHHHHHcCCcceee
Confidence 4444 4556788776553 34778888876431 23445555543 222
Q ss_pred cEE--------Ee------------------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 817 VYM--------RP------------------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 817 V~~--------~p------------------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.-. .| .++.+|++ +.-|+++.+++-|+++|++
T Consensus 340 ~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlS----vGlEd~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 340 PSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFS----FGVEDFDDLKADILQALDS 397 (398)
T ss_dssp SCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEE----CCSSCHHHHHHHHHHHHHH
T ss_pred eCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEE----eccCCHHHHHHHHHHHHhc
Confidence 211 11 11567765 4445666677777777765
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=98.39 E-value=4.2e-06 Score=91.05 Aligned_cols=238 Identities=14% Similarity=0.064 Sum_probs=145.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..++-...|+++|+++-+ .+.++.++||-.|+.+++...++ .| ..||+.+..|+|.
T Consensus 56 ~~nPT~~~LE~~la~LEg---~~~a~~~~SGmaAi~~~l~~l~~---------~G------------d~vl~~~~~Yg~t 111 (392)
T d1gc0a_ 56 ISNPTLNLLEARMASLEG---GEAGLALASGMGAITSTLWTLLR---------PG------------DEVLLGNTLYGCT 111 (392)
T ss_dssp -CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESSCCSHH
T ss_pred CCChHHHHHHHHHHHHhC---CcceeehhhHHHHHHHHHHhhcc---------CC------------Ceeecccccchhh
Confidence 457888999999999876 36788889999999888865521 22 5799999999987
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
....-..- ..+|. ....+ + ..|
T Consensus 112 ~~l~~~~~--------------~~~Gi-------------~~~~~-----------------------d-~~d------- 133 (392)
T d1gc0a_ 112 FAFLHHGI--------------GEFGV-------------KLRHV-----------------------D-MAD------- 133 (392)
T ss_dssp HHHHHHTG--------------GGGTC-------------EEEEE-----------------------C-TTC-------
T ss_pred hhhhhhhh--------------ccCCc-------------ccccC-----------------------C-ccC-------
Confidence 43221110 00110 00000 0 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.+++.+. ++...|++|.. .+...-++. ++.+.++|+++|+++|+|-..+. ...+.-+.
T Consensus 134 -~~~~~~ai~--------~~t~lv~~Esp-~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at------P~~~~Pl~ 193 (392)
T d1gc0a_ 134 -LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT------PYLQRPLE 193 (392)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH------HHHCCGGG
T ss_pred -HHHHHHhCC--------CCCeEEEeccc-ccceeeecc----hHHHHHHHHhcCCEEEEecCccC------ccccChHH
Confidence 134555553 35788999986 677766665 99999999999999999988641 22333334
Q ss_pred CCCcEEEe--ccccCC-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHH
Q 002941 680 CVPDIACY--GKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (863)
Q Consensus 680 v~PDivt~--sKgLgg-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~ 756 (863)
.-.||++- .|-++| |=.-.|+++++++.+...+... .....--..+|..|...+-.|+-|.- ..++..+++
T Consensus 194 ~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~----~~~~~G~~~~p~da~ll~rgl~TL~l--Rm~~~~~nA 267 (392)
T d1gc0a_ 194 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG----LKDMTGAVLSPHDAALLMRGIKTLNL--RMDRHCANA 267 (392)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH----HHHHTCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHH
T ss_pred hCCCEEEEecceeecCCcccccccccchhHHHHHHHHHH----HHHccCCcCChhhHHHHHhccccHHH--HHHHHHHHH
Confidence 45798865 698865 3344567778887776543110 00011123467777777766665421 123444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEecc------------------cceEEEEEEcc
Q 002941 757 RILRELWDLELIQQISSHRTVQRVVA------------------LGTLCAIELQA 793 (863)
Q Consensus 757 ~~l~~~l~~~l~~~~~~~p~v~~vrg------------------~Gl~~~iel~~ 793 (863)
..+. +.+++||.|..|.- -|.++.+++..
T Consensus 268 ~~lA--------~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~ 314 (392)
T d1gc0a_ 268 QVLA--------EFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG 314 (392)
T ss_dssp HHHH--------HHHHTCTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred HHHH--------HHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC
Confidence 4444 34567777665532 36778888853
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.26 E-value=4.8e-06 Score=91.89 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=116.1
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEE--EeccccC-C
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-G 693 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--t~sKgLg-g 693 (863)
++....||+.| ++..|.+.. +-.+++.+|.||++-+...+.... --..+|+ +|||..+ .
T Consensus 195 ~~~~ii~l~sP--nNPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~~~~~-----~~~~~Ivl~S~SK~fgla 256 (425)
T d2hoxa1 195 PEQYIEMVTSP--NNPEGLLRH-----------AVIKGCKSIYDMVYYWPHYTPIKY-----KADEDILLFTMSKFTGHS 256 (425)
T ss_dssp GGGEEEEEESS--CTTTCCCCC-----------CSSTTCEEEEECTTCSTTTSCCCS-----CBCCSEEEEEHHHHTSCG
T ss_pred CCceEEEEECC--CCCCcchhh-----------hhhhCCEEEEeccccCccccchhh-----hcCCeEEEEeCHHhccCc
Confidence 45567788899 788886532 234799999999994321111000 1123454 6799887 6
Q ss_pred CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhc---------ChhhHHhHHHHHHHHHHHH
Q 002941 694 GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK---------DPQTNHNIIPERRILRELW 763 (863)
Q Consensus 694 G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~---------~~~l~~~l~~~~~~l~~~l 763 (863)
| +.+|++++ ++.+++.+.. +....+++.+.++..+++++|+... ..++.+...+ .+++.+
T Consensus 257 G-lRiGw~i~~~~~i~~~~~~------~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~---~l~~r~ 326 (425)
T d2hoxa1 257 G-SRFGWALIKDESVYNNLLN------YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFK---KLRERW 326 (425)
T ss_dssp G-GCCEEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHH---HHHHHH
T ss_pred c-hheeeEEeCCHHHHHHHHH------hhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 7 89998655 5777776653 1234566777888888888886531 1122222222 222222
Q ss_pred HHHHHHHHhcCCCe---------------eEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEec---C--
Q 002941 764 DLELIQQISSHRTV---------------QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---G-- 823 (863)
Q Consensus 764 ~~~l~~~~~~~p~v---------------~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~---g-- 823 (863)
+.+.+.+.+.+.+ ......+.+..+.+..+. .....+.|.++||+++|+ |
T Consensus 327 -~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~---------~~~~~~lL~e~gI~v~pGs~FG~~ 396 (425)
T d2hoxa1 327 -VNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE---------DKDCYQTFQNGRINTQNGVGFEAS 396 (425)
T ss_dssp -HHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG---------GCSHHHHHHHTTEECEEGGGGTSC
T ss_pred -HHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh---------HHHHHHHHHhCCEEEEechhcCCC
Confidence 1233444443321 122334455555554322 122455678999999973 2
Q ss_pred -CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 824 -NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 824 -~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
+.+|++ ++.++|++++++++|++.++
T Consensus 397 ~~yvRis--l~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 397 SRYVRLS--LIKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp TTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence 678884 67889999999999998875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=98.26 E-value=1.6e-05 Score=86.50 Aligned_cols=239 Identities=11% Similarity=0.046 Sum_probs=143.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...++-...|+++|+++-+. +..+.++||-.|+.+++-..++ .| ..||+.++.|.|
T Consensus 59 R~~nPT~~~LE~~la~LEgg---~~a~~~sSGmaAi~~~l~~ll~---------~G------------d~vi~~~~~Yg~ 114 (397)
T d1y4ia1 59 RLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLCQ---------QG------------DHIVSASAIYGC 114 (397)
T ss_dssp TTSCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEESSSCHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---ccceeehHHHHHHHHHHhhccC---------CC------------Ceeeeecccccc
Confidence 45678899999999998763 5788889999999888754421 23 579999998887
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.....-.. ...+|. .. . | -...|
T Consensus 115 t~~~~~~~--------------l~~~Gi-------------~~-~----------------~-------vd~~d------ 137 (397)
T d1y4ia1 115 THAFLSHS--------------MPKFGI-------------NV-R----------------F-------VDAGK------ 137 (397)
T ss_dssp HHHHHHTH--------------HHHTTC-------------EE-E----------------E-------ECTTS------
T ss_pred cchhhhcc--------------cCCCce-------------Ee-e----------------c-------cCCCC------
Confidence 63322111 000010 00 0 0 00011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+.+++.+. ++..+|++|.. .+...-++. ++++.++|+++|+++|+|-... ..+.++-+
T Consensus 138 --~~~~~~~i~--------~~Tklv~~Esp-~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~a------tP~~~~Pl 196 (397)
T d1y4ia1 138 --PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALLVVDNTFM------SPYCQQPL 196 (397)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT------CTTTCCGG
T ss_pred --HHHHHHhcC--------CCCcEEEecCC-cccceeecc----cHHHHHHhhcCCceEEecCccc------CcccCcch
Confidence 134555552 46889999986 666554444 8999999999999999998753 23344444
Q ss_pred CCCCcEEEe--ccccCC-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 679 GCVPDIACY--GKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 679 gv~PDivt~--sKgLgg-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
..-.||++- .|-++| +=.=.|+++++++.+...+-.. +....--..+|..|-.++-.|+-|.- ..++-.++
T Consensus 197 ~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~----~~~~~G~~l~p~~a~l~~rgl~TL~l--Rm~~~~~n 270 (397)
T d1y4ia1 197 QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG----LKDITGGCMSPFNAWLTLRGVKTLGI--RMERHCEN 270 (397)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH----HHHTTCCCCCHHHHHHHHHHHTTHHH--HHHHHHHH
T ss_pred hcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHH----HHhCcCCcCCHHHHHHHHcCcCcHHH--HHHHHHHH
Confidence 444798865 598864 2234566778877665432110 00111122467777766666554421 12333444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEcc
Q 002941 756 RRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQA 793 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~ 793 (863)
+..+. +.+++||.|..|. |.|.|+.+++..
T Consensus 271 A~~lA--------~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~ 318 (397)
T d1y4ia1 271 ALKIA--------RFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG 318 (397)
T ss_dssp HHHHH--------HHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT
T ss_pred HHHHH--------HHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC
Confidence 44443 4567788877553 247889998864
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=5.4e-05 Score=84.15 Aligned_cols=214 Identities=15% Similarity=0.089 Sum_probs=114.5
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEec--ccc---
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLL--- 691 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~s--KgL--- 691 (863)
.++++++++.-. +..|+ +.. ..+.+.++++++|.++++|=+--.. -.|.. .--.+ -.|+++++ +.+
T Consensus 200 ~~~~a~v~v~~p-~~~g~-~e~---~~~~~~~~~h~~g~~~~~~~~~~~~-~~~l~-~p~~~--g~div~vg~~q~~G~P 270 (471)
T d1wyub1 200 GPHVAALMLTNP-NTLGL-FER---RILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVP 270 (471)
T ss_dssp STTEEEEEECSS-CTTSC-CCT---THHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCC
T ss_pred hccccceeeccC-CCccc-ccc---hhhhhHHHHHhccccccccccchhh-hhhcc-ccCcc--cccccccccccccccc
Confidence 457888888764 44444 332 2677889999999988887432111 01100 00011 13666653 434
Q ss_pred -CCCCCCceeeeccHHHHHhhhcC----C---------ccceeecccCCCccHHHHHHHHHHHHHhcChhhH---HhHHH
Q 002941 692 -TGGVIPLAATLATNAVFDSFVGD----S---------KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN---HNIIP 754 (863)
Q Consensus 692 -ggG~~Pigav~~~~~i~~~l~~~----~---------~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~---~~l~~ 754 (863)
++|--=+|++.+++++...+... . +.+.+.--.+.+++.+.+.+|...|.++=.+++. +....
T Consensus 271 ~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~ 350 (471)
T d1wyub1 271 HGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVL 350 (471)
T ss_dssp CTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 33412267888899988876531 0 0000000112334444444444455555344432 33444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEecccceE-EEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----e--cCCEEE
Q 002941 755 ERRILRELWDLELIQQISSHRTVQRVVALGTL-CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----P--LGNVIY 827 (863)
Q Consensus 755 ~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~-~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p--~g~~lr 827 (863)
++.++.+ +|. . +.+. +.-.+.+ --+.+..+. . ..+.++.++|+++|++-. | ..+.+.
T Consensus 351 ~A~Yla~----~L~----~-~G~~-~~~~~~ff~EFvv~~~~---~---~~~~~i~k~L~~~G~~~~~~~~p~~~~~~ll 414 (471)
T d1wyub1 351 NARYLKE----LLK----E-KGYR-VPYDGPSMHEFVAQPPE---G---FRALDLAKGLLELGFHPPTVYFPLIVKEALM 414 (471)
T ss_dssp HHHHHHH----HHH----H-TTCB-CSSCSSCCSCEEEBCST---T---CCHHHHHHHHHHTTCCCCEESCSTTSTTCEE
T ss_pred HHHHHHH----HHh----h-cCce-eccCcceeeEEeecCCC---C---CCHHHHHHHHHHcCCCCCcccCcCCCCCeEE
Confidence 4445444 331 1 1111 1122222 112222111 0 024568899999998753 2 237788
Q ss_pred EecCCCCcHHHHHHHHHHHHHHHHHHHH
Q 002941 828 LMCGPCSSPEVCSQLLLKLYQRLEEFDK 855 (863)
Q Consensus 828 ~~ppl~~t~eeid~~v~~L~~~l~~l~~ 855 (863)
+.+.=..|+||||.++++|++++++.++
T Consensus 415 v~vTE~~tkedID~lv~aL~~i~~e~~~ 442 (471)
T d1wyub1 415 VEPTETEAKETLEAFAEAMGALLKKPKE 442 (471)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHTSCHH
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 8877789999999999999999988764
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.23 E-value=1e-05 Score=87.62 Aligned_cols=136 Identities=14% Similarity=0.076 Sum_probs=83.3
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCCC-
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG- 694 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLggG- 694 (863)
.+..+|++|.. .+...-++. +++|+++|++||+++|+|....+ .+.+.-+..-.|+++- .|-++|.
T Consensus 132 ~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at------P~~~~Pl~~GaDiVvhS~TKyi~Ghs 200 (380)
T d1ibja_ 132 PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHS 200 (380)
T ss_dssp SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC------TTTCCGGGTTCSEEEEETTTTTTCSS
T ss_pred cCccEEEeccc-ccccccccc----HHHHHHHHHHcCCeEEeeccccc------cccccccccCCCEEEecccceecccc
Confidence 46789999997 777765555 89999999999999999998742 2233334445798865 6988752
Q ss_pred CCCceeeecc-HHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 695 VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 695 ~~Pigav~~~-~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
=.=.|+++.+ +++.+.+.... ...| -..+|..|...+-.|+-+.- ..++..+++.++. +.+++
T Consensus 201 Dv~~G~v~~~~~~~~~~~~~~~----~~~G--~~l~p~~a~ll~rgl~Tl~l--Rm~~~~~nA~~lA--------~~L~~ 264 (380)
T d1ibja_ 201 DVMAGVLAVKGEKLAKEVYFLQ----NSEG--SGLAPFDCWLCLRGIKTMAL--RIEKQQENARKIA--------MYLSS 264 (380)
T ss_dssp CCCCEEEEECSHHHHHHHHHHH----HHTT--CBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHH--------HHHHT
T ss_pred CccccccccchhhHHHHHHhhc----cccC--CcCCHHHHHHHHhcchhhhh--hHHHHHHHHHHHH--------HHHHh
Confidence 1234444544 56666554310 0112 22467777766666664421 1234445554444 34567
Q ss_pred CCCeeEe
Q 002941 774 HRTVQRV 780 (863)
Q Consensus 774 ~p~v~~v 780 (863)
||.|..|
T Consensus 265 hp~V~~V 271 (380)
T d1ibja_ 265 HPRVKKV 271 (380)
T ss_dssp CTTCCEE
T ss_pred CCCeeEE
Confidence 7776655
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=5.3e-05 Score=81.95 Aligned_cols=237 Identities=11% Similarity=0.081 Sum_probs=138.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCccC
Q 002941 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (863)
Q Consensus 440 ~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG~ 519 (863)
..+|-...|+++|+++-+. +.++.++||=.|+-+++....+ .| ..||+.+..|.|.
T Consensus 47 ~~nPt~~~le~~la~LEgg---~~a~~~sSGMaAi~~~l~~l~~---------~g------------d~vv~~~~~yg~t 102 (384)
T d1cs1a_ 47 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFLK---------PG------------DLLVAPHDCYGGS 102 (384)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEETTCCHHH
T ss_pred CCCHHHHHHHHHHHHHhCC---CceEEecChHHHHHHHHhhccc---------cc------------ceecccccccchh
Confidence 4578889999999998763 6788999999999888765421 12 5688887777664
Q ss_pred ccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHHH
Q 002941 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (863)
Q Consensus 520 t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 599 (863)
.......- ..++.. +.+ -...|
T Consensus 103 ~~~~~~~~--------------~~~g~~--------------~~~-----------------------~d~~d------- 124 (384)
T d1cs1a_ 103 YRLFDSLA--------------KRGCYR--------------VLF-----------------------VDQGD------- 124 (384)
T ss_dssp HHHHHHHH--------------TTTSCE--------------EEE-----------------------ECTTC-------
T ss_pred hhhhhhhh--------------cccccc--------------ccc-----------------------ccCCC-------
Confidence 32221110 000000 000 00011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcC
Q 002941 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (863)
Q Consensus 600 ~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (863)
.+.++..+. ++..+|++|.. .+...-++. ++++.++|+++|+++|+|..... ...+.-+.
T Consensus 125 -~~~~~~~~~--------~~t~~v~~Esp-sNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~at------P~~~~Pl~ 184 (384)
T d1cs1a_ 125 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLS------PALQNPLA 184 (384)
T ss_dssp -HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCGGG
T ss_pred -HHHHHhhcc--------ccccEEEEecc-ccccceecc----HHHHhhhhhhcCcEEEEeccccC------cccccccc
Confidence 123445553 34568999996 666654444 89999999999999999998731 22333333
Q ss_pred CCCcEEEe--ccccCC-CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHH
Q 002941 680 CVPDIACY--GKLLTG-GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (863)
Q Consensus 680 v~PDivt~--sKgLgg-G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~ 755 (863)
.-.||++- .|-++| |=.=.|++++ ++++.+.+.... ...| ...+|..|-..+-.|+-|.- ..++-.++
T Consensus 185 ~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~----~~~G--~~~~p~~a~ll~rgL~TL~l--Rm~~~~~n 256 (384)
T d1cs1a_ 185 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA----NNIG--VTGGAFDSYLLLRGLRTLVP--RMELAQRN 256 (384)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHH----HHHT--CBCCHHHHHHHHHHHTTHHH--HHHHHHHH
T ss_pred cCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhh----hhhh--hccccccHHHHhhccchhHH--HHHHHHHH
Confidence 44798864 698864 3233455666 455555544210 0112 23567776666655554321 12333444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEccC
Q 002941 756 RRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAA 794 (863)
Q Consensus 756 ~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~~ 794 (863)
+..+. +.++.||.|..|. |.|.++.+++...
T Consensus 257 A~~lA--------~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~ 305 (384)
T d1cs1a_ 257 AQAIV--------KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD 305 (384)
T ss_dssp HHHHH--------HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC
T ss_pred HHHHH--------HhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecch
Confidence 44443 4567788877664 3578999988643
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.11 E-value=8e-06 Score=87.30 Aligned_cols=189 Identities=10% Similarity=-0.019 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccc-----
Q 002941 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK----- 718 (863)
Q Consensus 644 ~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~----- 718 (863)
+++.++|++||+++++|-|++ +|- ...-.+. +..|+.+..|.++. .|.++++...+............
T Consensus 156 ~~i~~~~~~~~al~~vDavss-~g~--~~id~~~--~di~~~s~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (361)
T d2c0ra1 156 AQFKAFPDTGSVPLIGDMSSD-ILS--RPFDLNQ--FGLVYAGAQKNLGP--SGVTVVIVREDLVAESPKHLPTMLRYDT 228 (361)
T ss_dssp EECSSCCCCTTSCEEEECTTT-TTS--SCCCGGG--CSEEEEETTTTTCC--SSCEEEEEEGGGSSSCCTTSCGGGCHHH
T ss_pred ceEEEeeccCCceEEEEeecc-ccc--ccccccc--ceeEEEeccccccc--ccCcEEEEEhHHhhhCcccccccccccc
Confidence 345689999999999999994 432 2333333 34467777887763 34444444333222111100000
Q ss_pred -eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcC-CC-----eeEecccceEEEEEE
Q 002941 719 -ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH-RT-----VQRVVALGTLCAIEL 791 (863)
Q Consensus 719 -~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~-p~-----v~~vrg~Gl~~~iel 791 (863)
...........+.....+..++..+...+.......+.++....+. ...... .. ....|.. ..+.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~rS~-~~~~~~~ 303 (361)
T d2c0ra1 229 YVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIY----DAIDQSGGFYRGCVDVDSRSD-MNITFRL 303 (361)
T ss_dssp HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH----HHHHTSTTSSEESSCGGGBCS-SEEEEEC
T ss_pred ccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhh----hhhhhcccccccCCChhhccc-eEEEEEC
Confidence 0001112223333333333333333222212222222222222221 122221 11 1122222 2344444
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~~ 852 (863)
.+. .....+.+.|.++||.++.+. ..+|+..-..+|.|||++++++|++..++
T Consensus 304 ~~~--------~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 304 ASE--------ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp SCH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCc--------ccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 322 235678899999999887641 34899977788999999999999886543
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=98.09 E-value=1.4e-05 Score=85.03 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=90.8
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHH-HHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC-
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG- 693 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc-~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg- 693 (863)
++...|++|.. .+....++. ++.+.+++ +++|+++|+|...+. +..+.-+..-.|+++- .|-++|
T Consensus 82 ~~t~~i~~Es~-~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~at------p~~~~pl~~GaDiVv~S~TKy~~Gh 150 (331)
T d1pffa_ 82 PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS------PILTNPLDLGVDIVVHSATKYINGH 150 (331)
T ss_dssp TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTSSS
T ss_pred cccceeeeecc-ccccccccc----chhhhhhhhcccCceEEeeccccc------cccccccccCCCEEEecchhhcCCC
Confidence 45678888886 565544443 66667764 678999999988743 2334444444799865 698875
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
|=.-.|+++++++......... +....--..+|..|...+..|+-+.- ..++..+++..+.+ .+++
T Consensus 151 ~d~~~G~v~~~~~~~~~~~~~~----~~~~~G~~l~p~~a~ll~rgl~Tl~~--Rm~~~~~nA~~lA~--------~L~~ 216 (331)
T d1pffa_ 151 TDVVAGLVCSRADIIAKVKSQG----IKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENAQKVAE--------FLHE 216 (331)
T ss_dssp SSCCCEEEEECHHHHHHHHHTC----CCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHH
T ss_pred Cccccccccccccchhhhhhhh----hhhccCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------hhhh
Confidence 3344567778776655543211 01111123467777777777775531 13444555555444 4456
Q ss_pred CCCeeEe------------------cccceEEEEEEcc
Q 002941 774 HRTVQRV------------------VALGTLCAIELQA 793 (863)
Q Consensus 774 ~p~v~~v------------------rg~Gl~~~iel~~ 793 (863)
||.|..| .|.|.++.+++..
T Consensus 217 hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~ 254 (331)
T d1pffa_ 217 HKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG 254 (331)
T ss_dssp CTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred CCcEEeeccccccCccHHHHHhhcccccCcccceeecc
Confidence 7766555 3568899999863
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.05 E-value=4.4e-06 Score=88.99 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=99.7
Q ss_pred EEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceee
Q 002941 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAAT 701 (863)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav 701 (863)
.+.++.+ . |...+ ++++.++|++||+++|+|=|++ +|- ...-++.+| -|+.+++|.++.+ -+.+.+
T Consensus 142 ~~~~~~~-t---g~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~--~~id~~~~~--vd~~~~~~~k~~~-~~~~~~ 207 (360)
T d1w23a_ 142 DAYLHIT-S---NNTIY----GTQYQNFPEINHAPLIADMSSD-ILS--RPLKVNQFG--MIYAGAQKNLGPS-GVTVVI 207 (360)
T ss_dssp EEEEEEE-S---EETTT----TEECSSCCCCCSSCEEEECTTT-TTS--SCCCGGGCS--EEEEETTTTTSCT-TCEEEE
T ss_pred cceeEec-C---Ccccc----ceeeeeccccceeeEEeecccc-ccc--ccccccccc--ceEEeeccccccC-Ccceee
Confidence 4556664 3 34444 5577899999999999999995 432 233344444 3788888877644 233334
Q ss_pred eccHHHHHhhhcCCcc----c-eeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002941 702 LATNAVFDSFVGDSKL----K-ALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (863)
Q Consensus 702 ~~~~~i~~~l~~~~~~----~-~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~ 776 (863)
+.++............ . ...........+....+....+..+.+........+..+...... .........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 283 (360)
T d1w23a_ 208 VKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKII----YDTIDESNG 283 (360)
T ss_dssp EEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHTTTT
T ss_pred EechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHH----HHHHhhccc
Confidence 4333322111110000 0 000011111222222222222222222221122222222222211 112222111
Q ss_pred ----e--eEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHH
Q 002941 777 ----V--QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLY 847 (863)
Q Consensus 777 ----v--~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~ 847 (863)
+ ...|..+ .+.+.+.+. .....+...|.++|+..+.+. ..+|++.-..+|.|+|+++++.++
T Consensus 284 ~~~~~~~~~~rS~~-vvsf~i~~~--------~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~ 354 (360)
T d1w23a_ 284 FYVGHAEKGSRSLM-NVTFNLRNE--------ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMI 354 (360)
T ss_dssp SSEESSCGGGBCSS-EEEEECSSH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccCCChhhccee-EEEEEcCCC--------ccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHH
Confidence 1 1223333 445545322 245678888999999876531 358987655679999999999988
Q ss_pred HHHH
Q 002941 848 QRLE 851 (863)
Q Consensus 848 ~~l~ 851 (863)
+..+
T Consensus 355 ~~~~ 358 (360)
T d1w23a_ 355 QFKE 358 (360)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8664
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=6.8e-05 Score=81.35 Aligned_cols=288 Identities=13% Similarity=0.086 Sum_probs=161.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...+|-...|+++|+++-+ .+.++.++||-.|+-+++...++ .| ..||+...-|-|
T Consensus 54 R~~nPt~~~le~~la~LEg---~~~a~~~~SGMaAi~~~l~~l~~---------~G------------d~iv~~~~~Yg~ 109 (391)
T d1cl1a_ 54 RRGTLTHFSLQQAMCELEG---GAGCVLFPCGAAAVANSILAFIE---------QG------------DHVLMTNTAYEP 109 (391)
T ss_dssp TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEEETTSCHH
T ss_pred CCCChhHHHHHHHHHHHhC---CccEEEeccccceeeehhhcccC---------CC------------CeEEEecccccc
Confidence 4568889999999999876 36788899999999888765521 12 467777666654
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
|..-+.-. ...++. ....+ + ..|.
T Consensus 110 -T~~l~~~~-------------l~~~Gi-------------~~~~~-----------------------d-~~d~----- 133 (391)
T d1cl1a_ 110 -SQDFCSKI-------------LSKLGV-------------TTSWF-----------------------D-PLIG----- 133 (391)
T ss_dssp -HHHHHHHT-------------GGGGTC-------------EEEEE-----------------------C-TTCG-----
T ss_pred -hhhhhhhc-------------cccccc-------------ccccc-----------------------c-Cccc-----
Confidence 33322110 000010 00000 0 0110
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHc--CCeEEEecccccccccCCcchhh
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTAD 676 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~--gilLI~DEV~TGfGRtG~~~a~e 676 (863)
+.+++.+ .++..+|++|.. .+...-++ + ++.+.++|+++ |+++|+|..... ...+.
T Consensus 134 ---~~~~~~i--------~~~t~~i~~Etp-sNP~l~v~-D---i~~i~~~a~~~~~g~~~vVDnT~at------P~~~~ 191 (391)
T d1cl1a_ 134 ---ADIVKHL--------QPNTKIVFLESP-GSITMEVH-D---VPAIVAAVRSVVPDAIIMIDNTWAA------GVLFK 191 (391)
T ss_dssp ---GGGGGTC--------CTTEEEEEEESS-CTTTCCCC-C---HHHHHHHHHHHCTTCEEEEECTTTT------TTSSC
T ss_pred ---ccccccc--------ccccceeeeccc-Cccccccc-c---cHHHHHHHHhccCCcEEEEeccccc------hhhhc
Confidence 1122222 346789999986 56554444 3 78889999775 999999988742 22333
Q ss_pred hcCCCCcEEEe--ccccCC-CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHH
Q 002941 677 LLGCVPDIACY--GKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (863)
Q Consensus 677 ~~gv~PDivt~--sKgLgg-G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~ 753 (863)
-+..-.|+++- .|-++| |=.-.|+++.+++..+.+.... ...+.+ .+|..+...+-.|+-+. -..++..
T Consensus 192 Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~----~~~G~~--~~p~~a~ll~rgl~TL~--lR~~~~~ 263 (391)
T d1cl1a_ 192 ALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQM--VDADTAYITSRGLRTLG--VRLRQHH 263 (391)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH----HHTTCC--CCHHHHHHHHHHHTTHH--HHHHHHH
T ss_pred ccccccceEEeecchhccccccccccceeccccccccchhhh----hccccc--CCchhhhhhhccchhHH--HHHHHHH
Confidence 33344698865 688875 2234556777877777655311 112222 35666555555554331 1123334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEec------------------ccceEEEEEEccCCcCCCCchHHHHHHHHHH--H
Q 002941 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYGSLYAASLLKKL--R 813 (863)
Q Consensus 754 ~~~~~l~~~l~~~l~~~~~~~p~v~~vr------------------g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l--~ 813 (863)
+++..+ .+.+++||.|..|. |.|.++.+++.... ....+.+|...| +
T Consensus 264 ~nA~~v--------A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-----~~e~~~~f~d~L~l~ 330 (391)
T d1cl1a_ 264 ESSLKV--------AEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDNFSLF 330 (391)
T ss_dssp HHHHHH--------HHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTTCSSC
T ss_pred HHHHHH--------HHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCC-----CHHHHHHHHHcCCcc
Confidence 444444 34567888887763 45668888887432 111233343332 1
Q ss_pred HCCcEE--------Ee----------------cCCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 814 EDGVYM--------RP----------------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 814 e~GV~~--------~p----------------~g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
..|+-. .| .++.+|++ +.-|++|.+++-|+++|+++
T Consensus 331 ~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlS----VGlEd~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 331 SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLH----IGLEDVDDLIADLDAGFARI 390 (391)
T ss_dssp BCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEE----CCSSCHHHHHHHHHHHHHHT
T ss_pred eEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEE----eccCCHHHHHHHHHHHHHhh
Confidence 222211 11 12567775 44477788888888888764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=97.95 E-value=0.00051 Score=75.24 Aligned_cols=210 Identities=12% Similarity=0.029 Sum_probs=117.6
Q ss_pred CCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEe-cccc----
Q 002941 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY-GKLL---- 691 (863)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~-sKgL---- 691 (863)
.+++|||++.. -+.-|.+- + ++++.+++++.|.++|+|=-.-.++-.-.. ..+| .||++. +|.+
T Consensus 194 ~~~~Aavmi~~--Pnt~G~~e-d---~~~i~~~~h~~G~l~~~~ad~~al~~l~~P---g~~G--aDi~~g~~q~fg~p~ 262 (437)
T d1wyua1 194 GEEVGAVVVQN--PNFLGALE-D---LGPFAEAAHGAGALFVAVADPLSLGVLKPP---GAYG--ADIAVGDGQSLGLPM 262 (437)
T ss_dssp CTTEEEEEEES--SCTTSBCC-C---HHHHHHHHHHTTCEEEEECCTTGGGTBCCH---HHHT--CSEEEEECTTTTCCC
T ss_pred ccceeEEEEcc--cccccccc-c---hHHHHHHhhhccceEEeeechhhhhccccc---cccc--cceEeeccceecccc
Confidence 46889888876 35667664 2 688999999999998877433233222111 1122 488754 4533
Q ss_pred CCCCCCceeeeccHHHHHhhhcCCc--------ccee---------------ecccCCCccHHHHHHHHHHHHHhcChhh
Q 002941 692 TGGVIPLAATLATNAVFDSFVGDSK--------LKAL---------------LHGHSYSAHALGCAAAAKSIKWFKDPQT 748 (863)
Q Consensus 692 ggG~~Pigav~~~~~i~~~l~~~~~--------~~~~---------------~~~~T~~~~pla~AAalAaL~~l~~~~l 748 (863)
++|--..|.+.+++++...+...-- ...+ ..+...+++.+.+..+.+-+..+-.+++
T Consensus 263 g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL 342 (437)
T d1wyua1 263 GFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGL 342 (437)
T ss_dssp GGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccH
Confidence 3221346777888888776643100 0000 1122344454444444455555433333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe------c
Q 002941 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------L 822 (863)
Q Consensus 749 ~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p------~ 822 (863)
. ++.+.......++.+ .+.+.+.+..+...-.|--+.+..+. .+..+.++|+++|+.... .
T Consensus 343 ~-~ia~~a~~~A~yl~~----~L~~~~g~~~~~~~~~f~ef~v~~~~--------~~~~i~k~L~d~G~~~~~~~~~~~~ 409 (437)
T d1wyua1 343 R-EVALKSVEMAHKLHA----LLLEVPGVRPFTPKPFFNEFALALPK--------DPEAVRRALAERGFHGATPVPREYG 409 (437)
T ss_dssp H-HHHHHHHHHHHHHHH----HHTTSTTCEECSCSSBCSEEEEECSS--------CHHHHHHHHHHTTCCCCEECCTTSC
T ss_pred H-HHHHHHHHHHHHHHH----HhhhcCCeeccCCCCeeeEEEEECCC--------CHHHHHHHHHhCCCCCCcccccCCC
Confidence 2 334444334443322 33444444322222222222222111 256799999999997532 2
Q ss_pred CCEEEEecCCCCcHHHHHHHHHHHHHHH
Q 002941 823 GNVIYLMCGPCSSPEVCSQLLLKLYQRL 850 (863)
Q Consensus 823 g~~lr~~ppl~~t~eeid~~v~~L~~~l 850 (863)
.+.+.+.|.=..|+++||+++++|++++
T Consensus 410 ~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 410 ENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 4789999888899999999999998763
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=97.88 E-value=8.8e-05 Score=80.49 Aligned_cols=151 Identities=10% Similarity=0.074 Sum_probs=87.9
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHH-HcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--ccccCC-
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG- 693 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~-~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgLgg- 693 (863)
++..+|++|.. .+...-++. ++++.++++ ++|+++|+|...+. ...++-+..-.|||+- .|-++|
T Consensus 143 ~~t~lv~~Etp-~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~at------P~~~~Pl~~GaDiVvhS~TKy~~Gh 211 (394)
T d1e5ea_ 143 PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCS------PMITNPVDFGVDVVVHSATKYINGH 211 (394)
T ss_dssp TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTC------TTTCCGGGGTCSEEEEETTTTTTCS
T ss_pred ccccEEEEecc-CCcceeeeh----hhhhhhccccccCeEEEecCcccC------cccCCchhcCCCEEEechhhhcCCC
Confidence 45678999986 566554443 666666555 57899999988642 2233333344698864 698875
Q ss_pred CCCCceeeeccHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 002941 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (863)
Q Consensus 694 G~~Pigav~~~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~ 773 (863)
+=.-.|+++++++.....+... +....--..+|..+.-.+-.|+-|. -..++..+++..+. +.+++
T Consensus 212 sDv~~G~v~~~~~~~~~~~~~~----~~~~~G~~lsp~~a~ll~rgl~TL~--lRm~r~~~nA~~lA--------~~L~~ 277 (394)
T d1e5ea_ 212 TDVVAGLICGKADLLQQIRMVG----IKDITGSVISPHDAWLITRGLSTLN--IRMKAESENAMKVA--------EYLKS 277 (394)
T ss_dssp SCCCCEEEEECHHHHHHHHHTC----CCCCCCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHH--------HHHHT
T ss_pred cccccccccchhhHHHHHHHHH----HHHhhCCCCChHHHHHHHhhchhHH--HHHHHHHHHHHHHH--------HHHhh
Confidence 3244566778887766543210 0000111235666666665555442 11234444444443 45668
Q ss_pred CCCeeEec------------------ccceEEEEEEcc
Q 002941 774 HRTVQRVV------------------ALGTLCAIELQA 793 (863)
Q Consensus 774 ~p~v~~vr------------------g~Gl~~~iel~~ 793 (863)
||.|..|. |-|.++.+++..
T Consensus 278 hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~ 315 (394)
T d1e5ea_ 278 HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS 315 (394)
T ss_dssp CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred cCCccEEeCCCcccccchhhhhcccccCCCeeeeeccC
Confidence 88887764 348888888754
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.76 E-value=0.00047 Score=74.56 Aligned_cols=198 Identities=13% Similarity=0.132 Sum_probs=111.0
Q ss_pred CcEEEEEEccccccCCCceeCCHHHHHHHHHHHH----HcCCeEEEecccccccccCCcchhhhcCCCCcEEEe--cccc
Q 002941 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLL 691 (863)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~----~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~--sKgL 691 (863)
++..+|++|.. .+... .+++ ++++.++|+ ++|+++|+|..... ...++-+..-.|||+- .|-+
T Consensus 137 ~~t~lv~~Esp-sNP~l-~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~at------P~~~~Pl~~GADiVvhS~TKyi 205 (393)
T d1n8pa_ 137 ENTKLVWIETP-TNPTL-KVTD---IQKVADLIKKHAAGQDVILVVDNTFLS------PYISNPLNFGADIVVHSATKYI 205 (393)
T ss_dssp SSEEEEEECSS-CTTTC-CCCC---HHHHHHHHHHHTTTTTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTT
T ss_pred hhcceeEecCc-chhhh-hccc---hhhhhhhhhhhcccCCceEEEecCccC------cccCCchhhCCCEEEEcccccc
Confidence 46789999986 55554 4444 778888887 78999999988632 2233333344698865 6988
Q ss_pred CC-CCCCceeeec-cHHHHHhhhcCCccceeecccCCCccHHHHHHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHH
Q 002941 692 TG-GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (863)
Q Consensus 692 gg-G~~Pigav~~-~~~i~~~l~~~~~~~~~~~~~T~~~~pla~AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~ 769 (863)
+| |=.=.|+++. ++++.+.+.... ...| -..+|..|...+-.|+-+. -..++-.+++..+.++
T Consensus 206 ~GhsDv~~G~v~~~~~~~~~~l~~~~----~~~G--~~~~p~~a~ll~rgl~Tl~--lR~~~~~~nA~~lA~~------- 270 (393)
T d1n8pa_ 206 NGHSDVVLGVLATNNKPLYERLQFLQ----NAIG--AIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEF------- 270 (393)
T ss_dssp TCSSCCCCEEEEESCHHHHHHHHHHH----HHHC--CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHH-------
T ss_pred CCCCccccceeeecchhHHHHHHHHH----hhcC--CCCChHHHHHHHhCCcchh--hHHHHHHHHHHHHHHH-------
Confidence 75 2233445544 466666664311 0122 2346777776666666442 1134444555555443
Q ss_pred HHhcC-CCeeEe------------------c--ccceEEEEEEccCCcCCCCchHHHHHHHHHHH--HCCc--------E
Q 002941 770 QISSH-RTVQRV------------------V--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR--EDGV--------Y 818 (863)
Q Consensus 770 ~~~~~-p~v~~v------------------r--g~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~--e~GV--------~ 818 (863)
++.+ |.|..| + +-|.|+.+++.... ..+.+|...|. ..|. +
T Consensus 271 -L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~-------~~~~~f~~~l~l~~~~~SlGg~~SLi 342 (393)
T d1n8pa_ 271 -LAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-------EAASKFASSTRLFTLAESLGGIESLL 342 (393)
T ss_dssp -HTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-------HHHHHHHHHCSSSEECSCCCCSSCEE
T ss_pred -HHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCH-------HHHHHHHHhCCcceecccCCCcCceE
Confidence 3333 434332 1 34789999996431 23445555442 2121 1
Q ss_pred EEe---------------c---CCEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Q 002941 819 MRP---------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 853 (863)
Q Consensus 819 ~~p---------------~---g~~lr~~ppl~~t~eeid~~v~~L~~~l~~l 853 (863)
+.| . .+.+|++ +.-|++|.+++-|+++|++.
T Consensus 343 ~~p~~~~h~~~~~~~r~~~gi~~~liRlS----vGlE~~~DLi~Dl~~AL~~a 391 (393)
T d1n8pa_ 343 EVPAVMTHGGIPKEAREASGVFDDLVRIS----VGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp ECTTTTTSCSSCTTTTTTTSCCTTEEEEE----CCSSCHHHHHHHHHHHHHHH
T ss_pred eCchhhccccCCHHHHHhcCCCcCEEEEE----eccCCHHHHHHHHHHHHHHh
Confidence 111 0 1457765 33466777888887777654
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=0.00088 Score=72.23 Aligned_cols=184 Identities=11% Similarity=0.049 Sum_probs=109.1
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEe--ccccCCCCCCceeeecc---HHHHHhhhcCCc
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT---NAVFDSFVGDSK 716 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~--sKgLggG~~Pigav~~~---~~i~~~l~~~~~ 716 (863)
+++++++|++.|++|++|-.|. |+- .|..+ -.-+. ..|+||. -|.|.|- .-|.++++ +++++.+...
T Consensus 182 ~~~~reiad~vga~l~~D~aH~~GLI-a~g~~-~sP~~-~aDvvt~tThKtlrGP--rggiI~~~~~~~~~~~~i~~a-- 254 (416)
T d1dfoa_ 182 WAKMREIADSIGAYLFVDMAHVAGLV-AAGVY-PNPVP-HAHVVTTTTHKTLAGP--RGGLILAKGGSEELYKKLNSA-- 254 (416)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHHH-HHTSS-CCCTT-TSSEEEEESSSTTCCC--SCEEEEESSCCHHHHHHHHHH--
T ss_pred HHHHHHHHHhcCceEEcchhhhhcce-ecccc-CCccc-ccceeeeehhhcccCC--CceEEEeccchHhHHHHHHhh--
Confidence 8999999999999999999985 331 11111 11122 2488855 6999862 34445554 5776766531
Q ss_pred cceeecccCCCc-cHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc-cceEEEEEE
Q 002941 717 LKALLHGHSYSA-HALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGTLCAIEL 791 (863)
Q Consensus 717 ~~~~~~~~T~~~-~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg-~Gl~~~iel 791 (863)
. +-+..++ +.-..|+-..++....++ ++..++.++++.|.+.|.+.. +..+. .| ..-++.+++
T Consensus 255 ---v-fPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G------~~iv~--ggTdnHlvlvdl 322 (416)
T d1dfoa_ 255 ---V-FPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERG------YKVVS--GGTDNHLFLVDL 322 (416)
T ss_dssp ---H-TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGG--GSCSSSEEEEEC
T ss_pred ---h-CcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCC------ccccc--CCCCCceeEEEe
Confidence 1 1222232 233444433444444343 456778888888776553321 21111 11 124666777
Q ss_pred ccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec-------CCEEEEecCCC----CcHHHHHHHHHHHHHHHHH
Q 002941 792 QAAGCNAGYGSLYAASLLKKLREDGVYMR----PL-------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEE 852 (863)
Q Consensus 792 ~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~-------g~~lr~~ppl~----~t~eeid~~v~~L~~~l~~ 852 (863)
.+.. .........|.+.||.+. |+ ...||+-.|.. +.++|+.++.+.+.++++.
T Consensus 323 ~~~~-------~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 323 VDKN-------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp GGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred cccC-------CCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 5432 014556667778899885 22 15799976665 4789999999999998864
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=0.00013 Score=76.68 Aligned_cols=186 Identities=8% Similarity=-0.152 Sum_probs=92.9
Q ss_pred HHHHcCCeEEEecccccccccCCcchhhhcCCCCcEEEeccccCCCCCCceeeeccHHHHHhhhcCCccc----e-eecc
Q 002941 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK----A-LLHG 723 (863)
Q Consensus 649 lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt~sKgLggG~~Pigav~~~~~i~~~l~~~~~~~----~-~~~~ 723 (863)
.|..+++++++|=++ |++-. . .+..++.-|+...+|.++++ .+.+.++.++...+......... . ....
T Consensus 161 ~~~~~~~~v~vDa~~-~~~~~--~--vd~~~~dv~~~ss~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1bjna_ 161 PDFGADVVVAADFSS-TILSR--P--IDVSRYGVIYAGAQKNIGPA-GLTIVIVREDLLGKANIACPSILDYSILNDNGS 234 (360)
T ss_dssp CCCCTTCCEEEECTT-TTTSS--C--CCGGGCSEEEEETTTTTSST-TCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTT
T ss_pred ecccccceeeeeeec-cccce--e--eeeccceeEEEEcccccccC-CCceeEeeehhhhhccccCCcchhhHHHHhhhh
Confidence 467889999999776 45322 1 22233444566678998876 45555555544332211110000 0 0011
Q ss_pred cCCCccHHHH-HHHHHHHHHhcChhhHHhHHHHHHHHHHHHHHHHHHHHhcCCC--eeEecccceEEEEEEccCCcCCCC
Q 002941 724 HSYSAHALGC-AAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT--VQRVVALGTLCAIELQAAGCNAGY 800 (863)
Q Consensus 724 ~T~~~~pla~-AAalAaL~~l~~~~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~--v~~vrg~Gl~~~iel~~~~~~~~~ 800 (863)
.+....+... .+..+.+..+.+. ..+...++.......+... ......... ....|..+ .+++.+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~rs~~-v~~f~~~~~~----- 306 (360)
T d1bjna_ 235 MFNTPPTFAWYLSGLVFKWLKANG-GVAEMDKINQQKAELLYGV-IDNSDFYRNDVAKRNRSRM-NVPFQLADSA----- 306 (360)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-HHHCSSEECCBCGGGBCSS-EEEEEESSGG-----
T ss_pred hccccccchHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHh-hhccccccccCCcccccce-EEEEEcCCcc-----
Confidence 1112223333 3333333333232 2233333333333322211 111111111 11223333 5566665331
Q ss_pred chHHHHHHHHHHHHCCcEEEecC---CEEEEecCCCCcHHHHHHHHHHHHHHHH
Q 002941 801 GSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 801 ~~~~~~~l~~~l~e~GV~~~p~g---~~lr~~ppl~~t~eeid~~v~~L~~~l~ 851 (863)
....+...|.++||.++.+. ..+|++.-..+|+|||++++++|++..+
T Consensus 307 ---~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 307 ---LDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp ---GHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 34678888999999887642 3489987667899999999999988553
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=97.59 E-value=4.3e-05 Score=78.27 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=33.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|++|-|+| --||||||+|..|+.+|. ++|++|..+-
T Consensus 1 mr~Iai~g-KGGvGKTT~a~nLA~~LA-----~~G~rVllID 36 (269)
T d1cp2a_ 1 MRQVAIYG-KGGIGKSTTTQNLTSGLH-----AMGKTIMVVG 36 (269)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCEEEEEC-CCcCCHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 67888999 789999999999999999 8999998876
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=97.54 E-value=9.8e-05 Score=76.42 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+|+.|.|+| -.|||||++|..|+.+|. ++|++|...-
T Consensus 1 ~Mr~Iaisg-KGGVGKTT~a~NLA~~LA-----~~G~rVLlID 37 (289)
T d2afhe1 1 AMRQCAIYG-KGGIGKSTTTQNLVAALA-----EMGKKVMIVG 37 (289)
T ss_dssp CCEEEEEEE-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CccEEEEEC-CCCCCHHHHHHHHHHHHH-----HCCCCEEEEe
Confidence 578899988 789999999999999999 8899998765
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=97.42 E-value=0.001 Score=72.35 Aligned_cols=167 Identities=13% Similarity=0.041 Sum_probs=102.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCeEEEeCChhhHHHHHHHHHHHHHHhhccccccccCCCccccccccEEEEecCCCcc
Q 002941 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (863)
Q Consensus 439 ~~~~~~~~eLae~L~~~~p~~~~~~v~f~~SGSeAvE~ALklA~r~~~~~~G~~tgr~~~~~~~~~~r~~II~~~~sYHG 518 (863)
...+|-...|+++|+++-+ .+.++.++||-.|+.+++...++ .| ..||+.+..|+|
T Consensus 54 R~~nPT~~~LE~~la~LE~---~~~a~~~~SGmaAi~~~~~~l~~---------~g------------d~il~~~~~Yg~ 109 (421)
T d2ctza1 54 RIMNPTVDVLEKRLAALEG---GKAALATASGHAAQFLALTTLAQ---------AG------------DNIVSTPNLYGG 109 (421)
T ss_dssp TTBCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHCC---------TT------------CEEEECSCCCHH
T ss_pred CCCCHHHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHhhcc---------cc------------cceeecCCcCCc
Confidence 4567889999999999876 36788899999998888754421 12 579999999988
Q ss_pred CccccceecCCCCCCCCCcCCcccCCCcccCCCcccccCceeeecCcchhhhhhccccccccccccchhhcccCchhHHH
Q 002941 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (863)
Q Consensus 519 ~t~gals~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 598 (863)
.....-..- ..++. ....+ +. .+.
T Consensus 110 t~~l~~~~~--------------~~~gi-------------~~~~~-----------------------d~-~~~----- 133 (421)
T d2ctza1 110 TFNQFKVTL--------------KRLGI-------------EVRFT-----------------------SR-EER----- 133 (421)
T ss_dssp HHHHHHTHH--------------HHTTC-------------EEEEC-----------------------CT-TCC-----
T ss_pred hhHHHHHHH--------------hhccc-------------cceec-----------------------cc-ccC-----
Confidence 633221110 00010 00000 00 010
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCceeCCHHHHHHHHHHHHHcCCeEEEecccccccccCCcchhhhc
Q 002941 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (863)
Q Consensus 599 ~~~~~le~~l~~~i~~~~~~~iAAvIvEPViqg~gG~~~pp~~fL~~Lrelc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (863)
.+..+..+ ..++.+|++|.. .+...-++. ++.|.++|+++|+++|+|..... ....+.-+
T Consensus 134 --~~~~~~~~--------~~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~-----tP~~~~Pl 193 (421)
T d2ctza1 134 --PEEFLALT--------DEKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGM-----GGYLLRPL 193 (421)
T ss_dssp --HHHHHHHC--------CTTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG-----GGTSCCGG
T ss_pred --cchhcccc--------CCCceEEEEcCC-CcceeEecc----hHHHHHHHHhcCCceEecccccc-----cceecccc
Confidence 01122222 357889999996 676654444 99999999999999999988631 12223333
Q ss_pred CCCCcEEEe--ccccCC-CCCCceeeeccH
Q 002941 679 GCVPDIACY--GKLLTG-GVIPLAATLATN 705 (863)
Q Consensus 679 gv~PDivt~--sKgLgg-G~~Pigav~~~~ 705 (863)
..-.||++- .|-++| |=.=.|+++.+.
T Consensus 194 ~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~ 223 (421)
T d2ctza1 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDGG 223 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred ccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence 345798865 698875 323344555443
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.20 E-value=0.0037 Score=66.93 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=110.6
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccHHHHHhhhcCCccce
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKA 719 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~i~~~l~~~~~~~~ 719 (863)
+++++++|++.|++|++|=.|. |+ --|..+-. -+. ..|+||.+ |.|.|. +-|.+++++++.+.+...
T Consensus 180 ~~~~reIad~vga~l~~D~aH~~GL-Ia~g~~~~-P~~-~aDvvt~tThKtlrGP--rgg~I~~~~~~~~~i~~a----- 249 (405)
T d1kl1a_ 180 FAKFREIADEVGAYLMVDMAHIAGL-VAAGLHPN-PVP-YAHFVTTTTHKTLRGP--RGGMILCQEQFAKQIDKA----- 249 (405)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHH-HHTTSSCC-STT-TCSEEEEESSSTTCCC--SCEEEEECHHHHHHHHHH-----
T ss_pred hHHHHHHHhhhCCEEecchhhHhhh-hhhhhcCC-hhh-hhhheeccccccccCC--CCceEEecchhHHHHHhh-----
Confidence 8999999999999999999975 33 11211111 111 35999764 999873 556788899888877642
Q ss_pred eecccCCCc-cHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc--cceEEEEEEcc
Q 002941 720 LLHGHSYSA-HALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA--LGTLCAIELQA 793 (863)
Q Consensus 720 ~~~~~T~~~-~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~vrg--~Gl~~~iel~~ 793 (863)
. +-+..++ +.-..|+-..++....++ ++..++.++++.|.+.|.+. .+.. +.| .--++.+++..
T Consensus 250 v-fPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~------G~~v---v~ggTd~H~vlvdl~~ 319 (405)
T d1kl1a_ 250 I-FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE------GFTL---VSGGTDNHLLLVDLRP 319 (405)
T ss_dssp H-TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------TCEE---GGGSCSSSEEEEECGG
T ss_pred h-CcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC------Ccee---ecCCCccceeeccccc
Confidence 1 2222333 223333333333333233 35677788888777655332 1211 222 22466677754
Q ss_pred CCcCCCCchHHHHHHHHHHHHCCcEEE----ecC-------CEEEEecCCC----CcHHHHHHHHHHHHHHHH
Q 002941 794 AGCNAGYGSLYAASLLKKLREDGVYMR----PLG-------NVIYLMCGPC----SSPEVCSQLLLKLYQRLE 851 (863)
Q Consensus 794 ~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~g-------~~lr~~ppl~----~t~eeid~~v~~L~~~l~ 851 (863)
.. . ......+.|-+.||++. |+. ..+|+-.|.. +.++|+.++.+.+.++++
T Consensus 320 ~~----~---~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 320 QQ----L---TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp GT----C---CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred cC----C---cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 32 0 13344556777899886 221 5799977665 478999999999999995
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00029 Score=72.36 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=34.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~ 289 (863)
.++||.....-++..+...++.++..|+++.++|+|++
T Consensus 200 ~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v 237 (296)
T d1ihua1 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGV 237 (296)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEE
T ss_pred eeeEecCcchhHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 47899888878899999999999999999999999986
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.71 E-value=0.014 Score=57.22 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCCCCCCCCCe-EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 29 QPLDLPLSHPT-FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 29 ~~~~~~~~~~~-~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|..+|.+.|. ++++|. ||||||+..+=|+..++ ++|++|+..=
T Consensus 3 ~~~~~~~k~p~vi~lvGp-tGvGKTTTiAKLA~~~~-----~~g~kV~lit 47 (211)
T d1j8yf2 3 EPKVIPDKIPYVIMLVGV-QGTGKATTAGKLAYFYK-----KKGFKVGLVG 47 (211)
T ss_dssp CCCCSCSSSSEEEEEECS-CCC----HHHHHHHHHH-----HTTCCEEEEE
T ss_pred CcccCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCceEEEE
Confidence 34455555554 667888 99999999999999998 8899987654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.52 E-value=0.007 Score=59.28 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.|+++|. +||||||.++=|+..++ ++|++|+..
T Consensus 12 vi~lvGp-~GvGKTTTiaKLA~~~~-----~~g~kV~li 44 (207)
T d1ls1a2 12 LWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLV 44 (207)
T ss_dssp EEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEE
Confidence 4677888 99999999999999998 889998744
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.029 Score=54.80 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|++.|. |||||||..+=|+..++ ++|.+|...=
T Consensus 11 vi~lvGp-tGvGKTTTiAKLA~~~~-----~~g~kV~lit 44 (211)
T d2qy9a2 11 VILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLAA 44 (211)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 4677888 99999999999999998 8898887764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.021 Score=56.00 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=32.3
Q ss_pred CCCCCC-eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 33 LPLSHP-TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 33 ~~~~~~-~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++...| .++++|. ||||||+..+=|+..|+ ++|++|+..-
T Consensus 6 ~~~~~p~vi~lvGp-tGvGKTTTiAKLAa~~~-----~~~~kV~lit 46 (213)
T d1vmaa2 6 VPPEPPFVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLAA 46 (213)
T ss_dssp CCSSSCEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCCCCCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCceEEEe
Confidence 333445 4677888 99999999999999998 8898888765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.26 E-value=0.073 Score=51.70 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+++.|. ||||||+..+=|+..++ ++|++|+..=
T Consensus 7 ~vi~lvGp-tGvGKTTTiaKLA~~~~-----~~g~kV~lit 41 (207)
T d1okkd2 7 RVVLVVGV-NGVGKTTTIAKLGRYYQ-----NLGKKVMFCA 41 (207)
T ss_dssp SEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 45788898 99999999999999998 8899987543
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.25 E-value=0.045 Score=59.38 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCc-chhhhcCCCCcEEEec--cccCCCCCCceeeeccHH------------
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVE-TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA------------ 706 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~-~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~~------------ 706 (863)
+++++++|++.|++|++|=.|. |+=-.|.+ --++ ..|+||.+ |.|.| -.-|.++++++
T Consensus 197 ~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~----~aDvvt~tTHKtlrG--PrgGiI~~~~~~~~~~~~~~~~~ 270 (470)
T d1rv3a_ 197 YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEI 270 (470)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CC
T ss_pred HHHHHHHHhccCCeEEecchhhhhhccccccCChhh----eeeeeeeehhhhccC--CcceEEEEccccccccccccchh
Confidence 8999999999999999999985 33112211 1112 24999764 99976 12334555542
Q ss_pred ---HHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcChh---hHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeE
Q 002941 707 ---VFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (863)
Q Consensus 707 ---i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~~---l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~ 779 (863)
+.+.+... + +-++.++ +...+||-..++....+++ +..++.++++.|.+.|.+. .++.+.
T Consensus 271 ~~~~~~~i~~a-----v-FPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~------G~~v~~- 337 (470)
T d1rv3a_ 271 LYNLESLINSA-----V-FPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL------GYKIVT- 337 (470)
T ss_dssp BCCHHHHHHHH-----H-TTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEGG-
T ss_pred HHHHHHHHhhh-----c-CccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC------Cceecc-
Confidence 55555431 1 1222233 3334444333455444444 4466677777766644322 121111
Q ss_pred ecc-cceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEE----ec------CCEEEEecCCC----CcHHHHHHHHH
Q 002941 780 VVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL------GNVIYLMCGPC----SSPEVCSQLLL 844 (863)
Q Consensus 780 vrg-~Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~----p~------g~~lr~~ppl~----~t~eeid~~v~ 844 (863)
.| ..-++.+++.... -....+.+.|.+.||.+. |+ ...+||-.|.. +.++|+.++.+
T Consensus 338 -ggTdnHlvlvdl~~~g-------~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~ 409 (470)
T d1rv3a_ 338 -GGSDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAH 409 (470)
T ss_dssp -GSCSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred -CCCCCceEEEeecccC-------CcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHH
Confidence 11 2246666665422 013456667778899885 22 25799976664 47899999999
Q ss_pred HHHHHHHH
Q 002941 845 KLYQRLEE 852 (863)
Q Consensus 845 ~L~~~l~~ 852 (863)
.|.++++.
T Consensus 410 ~I~~~l~~ 417 (470)
T d1rv3a_ 410 FIHRGIEL 417 (470)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888863
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=96.19 E-value=0.013 Score=63.49 Aligned_cols=184 Identities=14% Similarity=0.075 Sum_probs=104.5
Q ss_pred HHHHHHHHHHcCCeEEEecccc-cccccCCcchhhhcCCCCcEEEec--cccCCCCCCceeeeccH--------------
Q 002941 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATN-------------- 705 (863)
Q Consensus 643 L~~Lrelc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivt~s--KgLggG~~Pigav~~~~-------------- 705 (863)
+++++++|++.|++|++|=.|. |+= -|..+-. -+. ..|+||.+ |.|.|- .-|.+++++
T Consensus 193 ~~~~reIad~vga~l~~D~aH~aGLI-A~g~~~s-P~~-~aDvvt~tTHKTlrGP--rgGiIl~~~~~~~~~~~~~~~~~ 267 (463)
T d2a7va1 193 YARMREVCDEVKAHLLADMAHISGLV-AAKVIPS-PFK-HADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIP 267 (463)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHH-HTTSSCC-GGG-TCSEEEEESSGGGCSC--SCEEEEEECSEEEEETTTEEEEE
T ss_pred HHHHHHHhhcccceEEechhhhhHHh-hhhhhcC-hhh-hhhhhhchhhhhhcCC--CceEEEEcccccccccccCccch
Confidence 8999999999999999999985 331 1211111 112 24999775 999762 233455554
Q ss_pred -HHHHhhhcCCccceeecccCCCc-cHHHHHHHHHHHHHhcCh---hhHHhHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 002941 706 -AVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLELIQQISSHRTVQRV 780 (863)
Q Consensus 706 -~i~~~l~~~~~~~~~~~~~T~~~-~pla~AAalAaL~~l~~~---~l~~~l~~~~~~l~~~l~~~l~~~~~~~p~v~~v 780 (863)
++.+.+... + +-+..++ +....||-..++....++ ++..++.++++.|.+.|.+. .+..+.
T Consensus 268 ~~~~~~i~~a-----v-FPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~------G~~vv~-- 333 (463)
T d2a7va1 268 YTFEDRINFA-----V-FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER------GYSLVS-- 333 (463)
T ss_dssp CCCHHHHHHH-----H-TTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEGG--
T ss_pred hHHHHHhhhh-----c-CcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC------CCeeec--
Confidence 344444321 1 1122222 233333333334433344 35577777777777654332 122111
Q ss_pred ccc-ceEEEEEEccCCcCCCCchHHHHHHHHHHHHCCcEEEe----c------CCEEEEecCCC----CcHHHHHHHHHH
Q 002941 781 VAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L------GNVIYLMCGPC----SSPEVCSQLLLK 845 (863)
Q Consensus 781 rg~-Gl~~~iel~~~~~~~~~~~~~~~~l~~~l~e~GV~~~p----~------g~~lr~~ppl~----~t~eeid~~v~~ 845 (863)
.|. --++.+++.... .......+.|-+.||.+.- . ...|||-.|.. +.++|+.++.+.
T Consensus 334 ggTdnHlvlvdl~~~~-------~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~ 406 (463)
T d2a7va1 334 GGTDNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDF 406 (463)
T ss_dssp GSCSSSEEEEECTTTT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCceeeeeccccC-------CCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHH
Confidence 111 135566664432 0245567778889998862 1 15789876655 467899999999
Q ss_pred HHHHHHH
Q 002941 846 LYQRLEE 852 (863)
Q Consensus 846 L~~~l~~ 852 (863)
|.++++.
T Consensus 407 I~~~l~~ 413 (463)
T d2a7va1 407 IDEGVNI 413 (463)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888863
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.016 Score=60.56 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
...|=|||. +|+|||++.-.|++.+. .+|.+|+..-
T Consensus 54 ~~~IgitG~-pGaGKSTLi~~l~~~~~-----~~g~~vavla 89 (327)
T d2p67a1 54 TLRLGVTGT-PGAGKSTFLEAFGMLLI-----REGLKVAVIA 89 (327)
T ss_dssp SEEEEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEeeCC-CCCCHHHHHHHHHHHHH-----hcCCceeeec
Confidence 345889998 99999999999999999 8898887665
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.35 E-value=0.0055 Score=57.12 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=34.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+.|-|+|. .||||||+...|++.|+ ++|++|+..|
T Consensus 1 Mkii~I~G~-~gSGKTTli~~l~~~L~-----~~g~~v~vik 36 (165)
T d1xjca_ 1 MNVWQVVGY-KHSGKTTLMEKWVAAAV-----REGWRVGTVK 36 (165)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 778889997 79999999999999999 9999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0093 Score=54.92 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=34.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
.|.+.|+|. +||||||+...|++.|. ++|++|+..|.
T Consensus 2 ~Pvi~itG~-~GSGKTTL~~~L~~~l~-----~~g~~v~v~~~ 38 (170)
T d1np6a_ 2 IPLLAFAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIKH 38 (170)
T ss_dssp CCEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHHH-----HCCCeEEEecc
Confidence 467999999 69999999999999999 89999999995
|
| >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein TM0796 species: Thermotoga maritima [TaxId: 2336]
Probab=94.13 E-value=0.14 Score=52.79 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.+.+.+.||+-.+||-+.+..|.++|+ ++|+++.+.=
T Consensus 156 ~~~rvl~vGTDca~GK~tTal~l~~~l~-----~~G~~a~fia 193 (338)
T d2g0ta1 156 KIKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLA 193 (338)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCcEEEEeccCccccHHHHHHHHHHHHH-----hCCCCeeEEE
Confidence 4678999999999999999999999999 9999998876
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.97 E-value=0.19 Score=51.91 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=30.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
..|=|||+ .|+|||++...|++.++ .+|++|+..-
T Consensus 52 ~~igitG~-pGaGKSTli~~l~~~~~-----~~g~~vaVia 86 (323)
T d2qm8a1 52 IRVGITGV-PGVGKSTTIDALGSLLT-----AAGHKVAVLA 86 (323)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEeeeCC-CCCCHHHHHHHHHHHHh-----hcCCceeeee
Confidence 35889998 99999999999999998 7888887765
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.58 E-value=0.026 Score=52.65 Aligned_cols=37 Identities=11% Similarity=-0.019 Sum_probs=32.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEcc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (863)
|+.+.|+|+ .||||||++..|++.|. .+|+++..+++
T Consensus 1 mkiivi~G~-~GsGKTT~~~~La~~L~-----~~~~~~~~~~~ 37 (194)
T d1nksa_ 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKIINY 37 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEEH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCEEEEEC
Confidence 678899999 59999999999999998 88999877773
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.60 E-value=0.052 Score=55.39 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=28.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
++|.|-|+|. +|+|||+++..|...|. +.|.++..+-
T Consensus 3 k~pIIgIaG~-SGSGKTTva~~l~~i~~-----~~~v~~~iI~ 39 (288)
T d1a7ja_ 3 KHPIISVTGS-SGAGTSTVKHTFDQIFR-----REGVKAVSIE 39 (288)
T ss_dssp TSCEEEEESC-C---CCTHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CCCEEEEECC-CCCcHHHHHHHHHHHHh-----hcCCCeEEEe
Confidence 5777889987 99999999999999998 7788776554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.22 E-value=0.043 Score=50.40 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|+++|. +|+|||||+..|++.|. .++....++.
T Consensus 8 ~I~l~G~-~GsGKTTia~~La~~L~-----~~~~~~~~~~ 41 (183)
T d1m8pa3 8 TIFLTGY-MNSGKDAIARALQVTLN-----QQGGRSVSLL 41 (183)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHCSSCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hcCCCchhhh
Confidence 4889999 99999999999999997 5555444443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.043 Score=49.40 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
++.|+++|+ +|||||||+..|++.|.
T Consensus 2 ~k~I~l~G~-~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 2 KRNIFLVGP-MGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCCEEEECC-TTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHhC
Confidence 356999999 99999999999999885
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.053 Score=49.83 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=30.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.++|+|. .|+|||+++..+++.|. ..|.+|.++-
T Consensus 2 k~v~ItG~-~GtGKTtl~~~i~~~l~-----~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGP-PGVGKTTLIHKASEVLK-----SSGVPVDGFY 36 (189)
T ss_dssp CCEEEESC-CSSCHHHHHHHHHHHHH-----HTTCCCEEEE
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 46999998 99999999999999998 7788776553
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.05 Score=54.56 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=33.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCcEEEEEEcCC
Q 002941 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (863)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~~~~~~~~v~gvi~n~~ 289 (863)
-+++|+....-++..+...++.+...+.++.++|+|+.
T Consensus 185 ~~vlV~~p~~~~~~~~~r~~~~l~~~~~~~~~iV~N~~ 222 (279)
T d1ihua2 185 KVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNS 222 (279)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred cceEeccccHhHHHHHHHHHHHHHhcCCCccEEEEcCC
Confidence 37788888877888888899999999999999999975
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.05 E-value=0.088 Score=48.45 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=30.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
+.|+|+|+ +||||||++..|++.|. .+|.++..+.
T Consensus 2 kiI~i~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 36 (190)
T d1khta_ 2 KVVVVTGV-PGVGSTTSSQLAMDNLR-----KEGVNYKMVS 36 (190)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCCEEEE
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCeEEEe
Confidence 56899999 89999999999999998 7788876654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.57 E-value=0.084 Score=48.14 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.+|.|+|+|. +||||||++..|++.|.
T Consensus 3 ~~~~I~i~G~-pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 3 LLPNILLTGT-PGVGKTTLGKELASKSG 29 (173)
T ss_dssp CCCCEEEECS-TTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHHC
Confidence 3677999999 79999999999998773
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=88.62 E-value=0.13 Score=46.73 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.8
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 36 SHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 36 ~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.+.|+|+|. +|+|||||+..|++.|-
T Consensus 2 ~~kiI~l~G~-~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGG-SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECC-TTSSHHHHHHHHHHHSS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHcC
Confidence 4567899998 99999999999999874
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.71 E-value=0.13 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 37 ~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
++.|.|+|+ +|+||||++..|+..|.
T Consensus 7 ~K~I~i~G~-~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGG-ESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECC-TTSHHHHHHHHHHHHTT
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 456999999 69999999999999874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=87.03 E-value=1.4 Score=43.24 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=28.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh-ccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSF-LLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l-~~~~~~~~g~~v~~~K 78 (863)
+.|.+-.+|+|||+++.-|+..+ . +.|.+|.||-
T Consensus 37 l~vi~G~~G~GKT~~~~~la~~~a~-----~~g~~v~~~s 71 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQALQWGT-----AMGKKVGLAM 71 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-----TSCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhhhh-----hcccceeEee
Confidence 77777789999999999998654 4 6799999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.41 E-value=0.19 Score=46.66 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
.||++|. +|+|||||+..|++.|. ..+.....+
T Consensus 21 vI~L~G~-pGSGKTTiAk~La~~l~-----~~~~~~~~~ 53 (195)
T d1x6va3 21 TVWLTGL-SGAGKTTVSMALEEYLV-----CHGIPCYTL 53 (195)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCCccch
Confidence 5889999 79999999999999997 445444433
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=84.54 E-value=0.23 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 39 ~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
.|+|+|. +|||||||+..|++.+.
T Consensus 4 lI~i~G~-~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGP-AGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHSS
T ss_pred EEEEECC-CCCCHHHHHHHHHHHcC
Confidence 4788888 99999999999999875
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=83.03 E-value=0.36 Score=43.69 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|+|+|. +|+||||++..|++.|.
T Consensus 7 ~iivl~G~-~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 7 HIYVLMGV-SGSGKSAVASEVAHQLH 31 (171)
T ss_dssp EEEEEECS-TTSCHHHHHHHHHHHHT
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 34777888 89999999999999874
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.95 E-value=0.4 Score=44.95 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|+++|. +||||||++..|++.|. ..|.++..+-
T Consensus 5 i~l~Gl-pgsGKSTla~~L~~~l~-----~~~~~~~~~~ 37 (213)
T d1bifa1 5 IVMVGL-PARGKTYISKKLTRYLN-----FIGVPTREFN 37 (213)
T ss_dssp EEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCCCeEEc
Confidence 667787 99999999999999998 7787775553
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.70 E-value=0.4 Score=45.98 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=27.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 41 ~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
.|.|. -|+||||.+..|...|. .+|++|..++
T Consensus 7 ~ieG~-dGsGKsT~~~~L~~~L~-----~~g~~v~~~~ 38 (209)
T d1nn5a_ 7 VLEGV-DRAGKSTQSRKLVEALC-----AAGHRAELLR 38 (209)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 33488 68999999999999999 8899998876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.39 E-value=0.6 Score=43.03 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEE
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (863)
|-|+|. +|+||||++..|...|. ..+..+..+
T Consensus 25 IgI~G~-~GSGKSTla~~L~~~l~-----~~~~~~~~~ 56 (198)
T d1rz3a_ 25 LGIDGL-SRSGKTTLANQLSQTLR-----EQGISVCVF 56 (198)
T ss_dssp EEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHhc-----cccccceec
Confidence 558887 99999999999999998 667666554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=80.37 E-value=0.53 Score=43.08 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 38 ~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
+.|+++|. .|+|||||+..|++.|.
T Consensus 3 ~~Iil~G~-~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGA-RGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESC-TTSSHHHHHHHHHHHHT
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHhC
Confidence 35888999 99999999999999884
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.32 E-value=0.57 Score=44.01 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=29.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCCCCCCceeEEc
Q 002941 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (863)
Q Consensus 40 ~~i~~t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (863)
|.|.|. -||||||++..|.+.|. .+|++|.+++
T Consensus 3 I~ieG~-dGsGKST~~~~L~~~l~-----~~g~~v~~~~ 35 (208)
T d1gsia_ 3 IAIEGV-DGAGKRTLVEKLSGAFR-----AAGRSVATLA 35 (208)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCCEEEEe
Confidence 567787 79999999999999998 8899998876
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.05 E-value=0.57 Score=43.83 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHHHhc
Q 002941 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSFL 63 (863)
Q Consensus 34 ~~~~~~~~i~~t~t~~GKT~v~~~L~~~l~ 63 (863)
|...+.|+|.|. +||||||++..|++.+.
T Consensus 5 ~~~~~iI~i~Gp-pGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 5 PDQVSVIFVLGG-PGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTTCEEEEEECS-TTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECC-CCCCHHHHHHHHHHHhC
Confidence 335667999998 79999999999999874
|