Citrus Sinensis ID: 002942

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860---
MQKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
ccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEEEcccEEEEEEEEEccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEEcEEEEEEEEEEEEEEEcccEEEEEEcccccHHcccccccccccccccccEEEEEcccccEEEEEEcccccEEcccEEEEEEEEEEcccccccEEEEEEccccEEEEcccccccccccHHcccccccccccccccccccccEEEcccccccccccccEEEEEEEEcccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEcEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEEEccEEEEEcccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEEccccccccccccccccEEEEEccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccEEEcccccccccccccEEEccEEccccccccccccccccccccEEEEEcccEEEEEccccEEEEEEEEEEEEccEEEccccEEEEEEEEcccccccccccccccccccccEEEEEEEcc
cccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccEEEEEEEEEcccccEEEEccEEEEEEEccccccccccccccccccccccHcccccccccccccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEEccccccEEEcccccccccccccccccccccccEEEEEEccccEEEEEEEcccHHHccccEEEEEEEEEEcccccccEEEEEEccccEEEEcccccccccccHcHccccccccccccccccccccEEEEcccccccccccEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEEEccccccccccccccccHHEEEEEEccccccccccccccccccccccccccccccHHHHHHccccccHcHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccHHHHcHHHHHccccccccccccccccccccHHccccccccEEEEccccHHHcEEEEEcccccccccccccEEEEEEEEEEccccccEcEEEEEEcEcccccccccccccccccccccEEEEEcEEEEEEEccccEEEEEEEEEEEcccEEEcccEEEEEEEcccccccccccccccccccccccEEEEEEEcc
mqkigssgqqnatrcGLWWVEMLKARHQYKDAATVYFRIcgeeplhsAVMLEQASYcyllskppmlhkygfhlvlsgdrykkcdQINHAIRTYRSAVSVykgstwshikdHVHFHIGQWYAVLGMHDIAVAHMLEKTgktfevvkprlpiinisslKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEesnicvagepvkvdiefknplqipisisnISLICElstrsdemesdsnssttelqndEESKLLTttgemnsdtssfTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAkgrrkvksspsndlKFIVIKSlpkleglihplperayaGDLRHLVLELKnqsdfsvknlkmkvshprflsignrddmtkEFPACLQKMTNaeqsvaggnfnkmpqavfsfpegisiqgetpllwplwyraavpgkisLSITIYYEMGDVSSVIKYRLLRMHYnlevlpslnvsfqispwsSRLQQYLVRMDVVnqtssenfqihqlssvghqweisllqpfdsifpseslfagqALSCFFMLknrgesstssddtsspsrllgsdvslqgtadtlfdisgspladfhAHERLLQRvsqddtntvdfifisqpsksdsdsgisdpqhlfshhachcsilgktpitwlvdgprtlhhnfnasfceVNLKMTIYNSSDAAMFVRVntfdspsssgqtseatsprsavpsgnqagwhdvpvltdikvtsqlplnqvkrssllesvspfiwsgssassvrlqpmsttdiamkvclfspgtydlsnyALNWKLLTisgqgnegetrqssgscpgypyFLTVLQAS
mqkigssgqqnatrcGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKtfevvkprlpiinisslkVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNplqipisisnISLICELSTRSdemesdsnssttelqndeESKLLTTtgemnsdtsSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGvynfesnlvkkkiakgrrkvksspsndlkfiVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQsdfsvknlkmkvshprflsignrdDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESstssddtsspsrlLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLEsvspfiwsgssassVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGetrqssgscpgypYFLTVLQAS
MQKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLvkkkiakgrrkvkSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGEsstssddtsspsRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
************TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICEL****************************************TLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIA************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN*******FPACLQ**********GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFML******************************DTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFI****************HLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNT**************************GWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSG**********MSTTDIAMKVCLFSPGTYDLSNYALNWKLLTIS***************PGYPYFLTVL***
**********NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM**************LPIINISSLKVIFE****************LWRSLEEDMIPSLSTA*********************CVAGEPVKVDIEFKNPLQIPISISNISLICELSTR*******************************SDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNF**********************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMT*****************************FSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGD***VIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQ**********LFAGQALSCFFMLKN*************PSRLLGSDVSLQGTADTL**ISGS*LA********************DFIFISQPSK***********HLFSHHACHCSILGKTPITWLVDG********************IYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLT************************FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWK************************YFLTVLQA*
***********ATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELS**********************SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKI************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR***************LLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQ***********DPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF**********************NQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQ***********SCPGYPYFLTVLQAS
*****SSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRS******************************SDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESN************VKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR*********TSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS**************SVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTI***************CPGYPYFLTVLQA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKTFEVVKPRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query863 2.2.26 [Sep-21-2011]
Q9Y2L51435 Trafficking protein parti yes no 0.711 0.427 0.259 9e-37
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2 Back     alignment and function desciption
 Score =  156 bits (394), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 198/763 (25%), Positives = 326/763 (42%), Gaps = 149/763 (19%)

Query: 12   ATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYG 70
            A RC L   E+LK++ +Y +AA +  R+  E+  L SA++LEQA++C++  K PM+ KY 
Sbjct: 502  AERCVLLSAELLKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYA 561

Query: 71   FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV 130
            FH++L+G R+ K  Q  HA+R Y  A+ VYKG  WS  +DH++F IG+    L   D AV
Sbjct: 562  FHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAV 621

Query: 131  A---HMLEKTGKT------------FEVVK-----------PRLPI--INISSLKVIFED 162
            +   H+L    K               V K           P+LP+  IN S+ +V F  
Sbjct: 622  SAFRHILINESKQSAAQQGAFLREYLYVYKNVSQLSPDGPLPQLPLPYINSSATRVFFGH 681

Query: 163  HRTYASAEA-ANVRESL-----------WRSLEEDMIPSLSTA--RSNWLELQSKLIMKK 208
             R  A  E  A    SL           WR LEE ++  ++     SN+   Q    +  
Sbjct: 682  DRRPADGEKQAATHVSLDQEYDSESSQQWRELEEQVVSVVNKGVIPSNFHPTQ--YCLNS 739

Query: 209  FEESN---ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQ 265
            + +++   + V  EP+ V++ F+NPL++ + ++++SL+ +   + D    D         
Sbjct: 740  YSDNSRFPLAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD--------- 789

Query: 266  NDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS 325
            N+E  +L+T+  EM     +  +SE  I+  G E+ + +L + P   G L I+GV + L 
Sbjct: 790  NEEVKQLVTSEPEM---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNLG 844

Query: 326  -----------GSLVGVYNFESNL---VKKK------------IAKGRRKVKSSPSNDLK 359
                       G+L G +  + +L   V+ K              + +  VK  P   L 
Sbjct: 845  TIQGSMTVDGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLD 904

Query: 360  FIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN-- 417
             I+ + +P LE      P     G++R   +E  N S   +  LK+    P F + G   
Sbjct: 905  PIITEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNT 964

Query: 418  -----------------RDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAV-FSFPEGIS 459
                             +  +T     C   +++A     G      P+ +    P+ + 
Sbjct: 965  AVLTPLSPSASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVL 1024

Query: 460  IQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSF 518
            + G +  L P+W R     G   ++   YYE       I++R+LR    +    SLNV  
Sbjct: 1025 LPGASVQL-PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRA 1083

Query: 519  QISPWSS------RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGHQWE----ISLLQP 564
             +   +S      R    LV +DV N  +SE     F I Q+SS    W+    ++L + 
Sbjct: 1084 TVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNLSEN 1143

Query: 565  FDSIFPS--ESLFAGQALSCFFMLKNRGESST-SSDDTSSPSRLLGSD---VSLQGTADT 618
             D+   S  +  F  +A+ C      + E++T SS+  +    + G++    S    AD 
Sbjct: 1144 KDTKLASREKGKFCFKAIRC-----EKEEAATQSSEKYTFADIIFGNEQIISSASPCADF 1198

Query: 619  LFDISGSPLADFHAH-------------ERLLQRVSQDDTNTV 648
             +    S L    AH              RL+Q+ S+ D N V
Sbjct: 1199 FYRSLSSELKKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIV 1241
May be involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query863
255566159 1284 conserved hypothetical protein [Ricinus 0.960 0.645 0.653 0.0
296089365 1262 unnamed protein product [Vitis vinifera] 0.979 0.669 0.635 0.0
359481103 1289 PREDICTED: trafficking protein particle 0.979 0.655 0.635 0.0
356503854 1289 PREDICTED: trafficking protein particle 0.984 0.659 0.606 0.0
449437874 1288 PREDICTED: trafficking protein particle 0.989 0.663 0.601 0.0
356572631 1254 PREDICTED: trafficking protein particle 0.987 0.679 0.601 0.0
356572633 1257 PREDICTED: trafficking protein particle 0.984 0.676 0.601 0.0
356572629 1283 PREDICTED: trafficking protein particle 0.984 0.662 0.601 0.0
297811763 1249 binding protein [Arabidopsis lyrata subs 0.966 0.667 0.568 0.0
334187712 1244 uncharacterized protein [Arabidopsis tha 0.966 0.670 0.563 0.0
>gi|255566159|ref|XP_002524067.1| conserved hypothetical protein [Ricinus communis] gi|223536635|gb|EEF38277.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/864 (65%), Positives = 678/864 (78%), Gaps = 35/864 (4%)

Query: 3    KIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSK 62
            K+G SGQQNA RCGLWWVEMLK R QYK+AA VYFRIC EE LHSAVMLEQASYCYLLS+
Sbjct: 408  KMGLSGQQNAVRCGLWWVEMLKTRDQYKEAAAVYFRICSEEILHSAVMLEQASYCYLLSQ 467

Query: 63   PPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAV 122
            PPMLHKYGFHLVLSGDRY+KCDQI HAIRTYRSA+SVYKG+TWS+IKDHV+FHIGQWYA 
Sbjct: 468  PPMLHKYGFHLVLSGDRYRKCDQIKHAIRTYRSAISVYKGTTWSYIKDHVYFHIGQWYAF 527

Query: 123  LGMHDIAVAHMLE------------------------KTGKTFEVVKPRLPIINISSLKV 158
            LGM+D+AV HMLE                        KTGKTFE ++ +LP+INISSLK+
Sbjct: 528  LGMYDVAVTHMLEVLTCSHQSKTTQELFLQEFLQIVQKTGKTFEALRLQLPVINISSLKL 587

Query: 159  IFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAG 218
            +FEDHRTYAS   A+VRES+WRSLEEDMIPSLS A+SNWLELQSK++ K F+++NICVAG
Sbjct: 588  VFEDHRTYASPAVASVRESVWRSLEEDMIPSLSAAKSNWLELQSKVVPKSFKDANICVAG 647

Query: 219  EPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGE 278
            E +KV IEF+NPL+IPIS+S++SLICELS  SD+M SD+ SS TE QNDEE K L   G+
Sbjct: 648  EAIKVRIEFQNPLKIPISLSSVSLICELSG-SDDMNSDAGSSATEHQNDEECKKL---GD 703

Query: 279  MNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNL 338
            + SD S FTLSE D +L G E ILV L VTPKVEG LKIVG+RW+LSGS++G YN ESNL
Sbjct: 704  LTSDNSLFTLSEADFTLEGDEKILVHLTVTPKVEGSLKIVGIRWKLSGSVLGYYNLESNL 763

Query: 339  VKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDF 398
            VK KI KGRRK K SP + LKFIVIK+LPKLEG+IH LPE+AYAGDLRHLVLEL+NQS+F
Sbjct: 764  VKGKITKGRRKAKHSPKSYLKFIVIKNLPKLEGIIHSLPEKAYAGDLRHLVLELRNQSEF 823

Query: 399  SVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 458
            SVKNLKMK+S+PRF+SIGN +D+  E P CL+K T  EQ     +  K    +F FPE I
Sbjct: 824  SVKNLKMKISNPRFMSIGNGEDLNCEIPECLEKKTEFEQISVPADSKKELHDIFVFPEDI 883

Query: 459  SIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSF 518
            SI+ E PL WPLW RAAVPGKISL + +YYEMGD SS+++YR LRM Y+L+VLPSL++SF
Sbjct: 884  SIEREKPLSWPLWLRAAVPGKISLYMVVYYEMGDASSIMRYRTLRMQYDLQVLPSLDLSF 943

Query: 519  QISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQ 578
             ISP  SRLQ++LVRMD+VN+TSSE+FQ++QLS VGHQWEISLLQP D+IFPS+SL AGQ
Sbjct: 944  AISPCPSRLQEFLVRMDLVNKTSSESFQVNQLSCVGHQWEISLLQPPDAIFPSQSLIAGQ 1003

Query: 579  ALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSL--QGTADTLFDISGSPLADFHAHERL 636
            A SCFFMLK+R +S  + +   S SR  GSDV L  + + +TLFDIS SPLADFH +ERL
Sbjct: 1004 AFSCFFMLKSRRKSLGTGEKILSLSRFPGSDVRLTPEDSKNTLFDISSSPLADFHDYERL 1063

Query: 637  LQRVS-QDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPR 695
                S Q+  NTVD I IS+P KSD+ +GIS+P HLFSHHACHCS    +PI+W+VDGPR
Sbjct: 1064 QHETSNQESVNTVDLILISRPLKSDNATGISNPPHLFSHHACHCSTASTSPISWIVDGPR 1123

Query: 696  TLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAG 755
               H F+ASFCEVNL+M +YNSSDA   V +NT DS S +GQ S+A    SAV S NQ G
Sbjct: 1124 FRRHKFSASFCEVNLRMLVYNSSDAVASVAINTLDSTSGNGQLSDA----SAVTSRNQTG 1179

Query: 756  WHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLF 815
            WH + +  DIK+ S +P   V R    ESVSPFIWSGSS++ ++L+P+S+T+I +++C+F
Sbjct: 1180 WHHLSLENDIKIISDVPETNVARLQSPESVSPFIWSGSSSTRIQLEPLSSTEIPLQICVF 1239

Query: 816  SPGTYDLSNYALNWKLLTISGQGN 839
            SPGTYDLSNY LNW L  ++ +GN
Sbjct: 1240 SPGTYDLSNYVLNWNLQPVNNEGN 1263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089365|emb|CBI39137.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481103|ref|XP_002263641.2| PREDICTED: trafficking protein particle complex subunit 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356503854|ref|XP_003520717.1| PREDICTED: trafficking protein particle complex subunit 8-like [Glycine max] Back     alignment and taxonomy information
>gi|449437874|ref|XP_004136715.1| PREDICTED: trafficking protein particle complex subunit 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356572631|ref|XP_003554471.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356572633|ref|XP_003554472.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356572629|ref|XP_003554470.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297811763|ref|XP_002873765.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319602|gb|EFH50024.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187712|ref|NP_001190319.1| uncharacterized protein [Arabidopsis thaliana] gi|332004886|gb|AED92269.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query863
FB|FBgn02606551319 l(3)76BDm "lethal (3) 76BDm" [ 0.146 0.095 0.407 1.1e-35
UNIPROTKB|Q9Y2L51435 TRAPPC8 "Trafficking protein p 0.148 0.089 0.416 1.5e-32
FB|FBgn0260655 l(3)76BDm "lethal (3) 76BDm" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 251 (93.4 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 53/130 (40%), Positives = 78/130 (60%)

Query:     9 QQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLH 67
             QQ ATR  L  +E LK    Y + A    R+  EE  L SA++LEQA+YC+L+++PPM  
Sbjct:   503 QQFATRATLLSMECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHR 562

Query:    68 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIG-QWYAVLGMH 126
             KY FH+VL+G+RY +  Q  HA R YR A  V++   WS  +DH+ + +  Q Y +  + 
Sbjct:   563 KYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQVFQKREWSLAEDHIQYTVAKQAYMLKQLE 622

Query:   127 DIA--VAHML 134
             + +   AH+L
Sbjct:   623 EASRSFAHLL 632
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|Q9Y2L5 TRAPPC8 "Trafficking protein particle complex subunit 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
pfam12739390 pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAP 9e-32
pfam086261183 pfam08626, TRAPPC9-Trs120, Transport protein Trs12 1e-04
>gnl|CDD|221746 pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAPP I complex 85 kDa subunit Back     alignment and domain information 
 Score =  127 bits (322), Expect = 9e-32
 Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 2   QKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEE-----PLHSAVMLEQASY 56
            K        ATRC L   E+LK+R  Y++AA    R   E       + SA++LE+A+Y
Sbjct: 266 LKRCLRSPYYATRCALLSAELLKSRGGYREAADALARWSSEILQDLGAVGSALLLERAAY 325

Query: 57  CYLL-------SKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIK 109
           CY         S    L K  FH+VL+G R+ K  Q   A+R Y+ A+ VY+G  WS  +
Sbjct: 326 CYASLQSDPPMSGGTRLRKAAFHMVLAGHRWSKAGQKALALRCYKEALPVYEGKGWSLAE 385

Query: 110 DHVHF 114
           DH+ F
Sbjct: 386 DHLLF 390

This family is one of the subunits of the TRAPP Golgi trafficking complex. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II, and this Trs85 is in the smaller complex. TRAPP I, but Not TRAPP II, functions in ER-Golgi transport. Trs85p was reported to function in the cytosol-to-vacuole targeting pathway, suggesting a role for this subunit in autophagy as well as in secretion. The overall architecture of TRAPP I shows the other components to be Bet3p (TRAPPC3), Bet5p (TRAPPC1), Trs20p (TRAPPC2), Trs23p (TRAPPC4), Trs31p (TRAPPC5), Trs33p (TRAPPC6a and b) and Trs85p. Length = 390
>gnl|CDD|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 863
KOG1938960 consensus Protein with predicted involvement in me 100.0
PF086261185 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC 99.96
PF12739414 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 99.92
KOG19531235 consensus Targeting complex (TRAPP) subunit [Intra 99.79
PF07919554 Gryzun: Gryzun, putative trafficking through Golgi 99.21
PF06159249 DUF974: Protein of unknown function (DUF974); Inte 97.91
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.32
COG1470513 Predicted membrane protein [Function unknown] 97.11
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 96.16
PF00927107 Transglut_C: Transglutaminase family, C-terminal i 95.6
KOG1586288 consensus Protein required for fusion of vesicles 95.42
PF14874102 PapD-like: Flagellar-associated PapD-like 94.52
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 94.46
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 94.41
KOG2625348 consensus Uncharacterized conserved protein [Funct 92.74
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 89.75
PRK15359144 type III secretion system chaperone protein SscB; 89.74
KOG1586288 consensus Protein required for fusion of vesicles 89.67
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 87.86
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 87.14
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 86.87
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 86.78
TIGR02552135 LcrH_SycD type III secretion low calcium response 85.43
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 85.14
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 85.07
PF05753181 TRAP_beta: Translocon-associated protein beta (TRA 84.89
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 84.85
cd00189100 TPR Tetratricopeptide repeat domain; typically con 84.56
PRK114471157 cellulose synthase subunit BcsC; Provisional 82.6
CHL00033168 ycf3 photosystem I assembly protein Ycf3 82.48
PRK02603172 photosystem I assembly protein Ycf3; Provisional 82.02
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 81.86
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 81.5
PRK11788389 tetratricopeptide repeat protein; Provisional 80.54
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 80.23
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-75  Score=681.89  Aligned_cols=665  Identities=25%  Similarity=0.284  Sum_probs=480.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhccchHHHHHHHHhHhCcch-hhHHHHHHHHHhhhhccCCCcchhhHhHHHhhccchhcC
Q 002942            5 GSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKC   83 (863)
Q Consensus         5 ~~~~~~~A~R~all~~E~lk~~~~~~eAa~~Lir~tsed~-L~SALLLEQAA~c~L~~~ppm~RKyAfhmVLAGhRyska   83 (863)
                      +.+ +++|+||+++++||++.+|+|.|||+.|+|+++||+ |++||++||||+||..++|||.|||+||+||||+||++|
T Consensus       251 ~k~-~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~a  329 (960)
T KOG1938|consen  251 LKN-YQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSA  329 (960)
T ss_pred             Hhh-ccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccC
Confidence            444 789999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHH---HHHHH----------------------hcC
Q 002942           84 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV---AHMLE----------------------KTG  138 (863)
Q Consensus        84 gqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av---~h~l~----------------------~~~  138 (863)
                      ||++||+|||++|+++|+.++|+.++||++|++|+ .+.+.+.|+|.   +|++.                      ...
T Consensus       330 nqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~~~s~~~  408 (960)
T KOG1938|consen  330 NQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQEDDADEEFSKLIADCMKQSKGLQTEFLRLYSNKDSFIY  408 (960)
T ss_pred             CChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcchhHHHHHHHHHhhhhhcChHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999 66666666653   44333                      123


Q ss_pred             CCCccCCCc-cceEecCccEEEecCC--cccccccccch----hHHHHHHHHHhhccccccccchhhhhhhhhhh-cccc
Q 002942          139 KTFEVVKPR-LPIINISSLKVIFEDH--RTYASAEAANV----RESLWRSLEEDMIPSLSTARSNWLELQSKLIM-KKFE  210 (863)
Q Consensus       139 ~~~~~~~Lp-LP~i~~~~~~V~~~~~--~~~~~~~~~~~----~e~~W~~LEe~lv~s~~~~~~~w~~~~~~~~~-~~~~  210 (863)
                      +..++++|+ +|.++++.++|++++.  +++++...+..    .+++|..||++.+...+.|..+|...+.+... .+..
T Consensus       409 ~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e~~~at~~~~~sd~~w~~lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~  488 (960)
T KOG1938|consen  409 DHTPVVQLPQLPMLSMEERLVILSEPTRSTDAEALPATHQYLVSDNIWPSLERKSSHILFAGSQPFRPSQLLLAEFSDKF  488 (960)
T ss_pred             ccCCccccCCcchhhhhHHHHHhcCCCCCcchhhhhhhhhhccccccchhHHHHHHHHHhcccCCCcchhcccchhcccc
Confidence            344788899 9999999999999994  55555443333    66699999999988888887777655543322 2223


Q ss_pred             CCceeecCceEEEEEEEeCcccccEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 002942          211 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE  290 (863)
Q Consensus       211 ~~~~~vvgEpi~V~V~L~NPL~ipL~ls~I~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~  290 (863)
                      +.+++|+||++++.|+++|||++++.++++.|+|++... +....++..+...       ..|.-+         -....
T Consensus       489 ~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~-~~s~~~Na~s~~~-------~~Pe~~---------~~s~~  551 (960)
T KOG1938|consen  489 KNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLD-NLSGSSNAYSHSQ-------SSPELI---------DDSAF  551 (960)
T ss_pred             ccccccCCcceeeEEeecCccceeccccchhhhhhcccc-ccccccccccccc-------cChhhh---------hhhhH
Confidence            488999999999999999999999999999999999863 2222222221100       112100         00112


Q ss_pred             eeEEECCCceEEEEEEEEeCceeEEEEEEEEEEe------ccceeeEEEeecchhhhhhccccc-cccCCCCCceEEEEe
Q 002942          291 VDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNFESNLVKKKIAKGRR-KVKSSPSNDLKFIVI  363 (863)
Q Consensus       291 ~~i~L~p~etk~V~L~v~P~~~G~L~I~Gv~~~L------~g~v~g~~~F~i~g~rl~~tK~kr-~~~~~pd~~L~~~V~  363 (863)
                      ..+.+.+.|.+++.|+.+|+..|.|+|.|..|+.      .+.+.|...|+++|+|++.+++++ ..++.+|.||.+.+.
T Consensus       552 ~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~le~qgirl~~~~~~~~s~~~t~d~RL~~~~~  631 (960)
T KOG1938|consen  552 PELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSLEIQGIRLNNTKLDVTSSKLTNDTRLNILAS  631 (960)
T ss_pred             HHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccchhhhhcchhhhcccccccccChHHHHHHHHH
Confidence            4688999999999999999999999999999999      567889999999999999999766 789999999999999


Q ss_pred             cCCCeEEEEEecCCccccCccEEEEEEEEEecCccccccEEEEecCCceEEeccCCCCCccchhhhhccccccccccCCC
Q 002942          364 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGN  443 (863)
Q Consensus       364 ~~~P~L~v~~~~~P~~ll~GEi~~~~l~L~N~g~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~  443 (863)
                      +.+|.|+++|+++|..+||||+|++.|+++|.|.+|+.+|++++++|+|-...+      ..+.+.... ..++..   .
T Consensus       632 e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~~~l~n------~s~~~~~~~-~a~i~~---~  701 (960)
T KOG1938|consen  632 EMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYFAVLEN------ESHRKGKMN-AANISQ---Q  701 (960)
T ss_pred             hhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhhhhccc------ccccccccC-Hhhhhh---h
Confidence            999999999999999999999999999999999999999999999997711110      112222111 011110   0


Q ss_pred             CCCCCcceeecCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEeeCCCCCcceEEEEEEEEEEEEeceeeEEEEEEee
Q 002942          444 FNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPW  523 (863)
Q Consensus       444 ~~~~~~~v~~~P~~~~L~pGes~~lPlwlra~~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s  523 (863)
                      ..-+....+..+++..|.+|+++++|+|+|++.++.     =           ..+|                   ++++
T Consensus       702 ~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~-----------~w~r-------------------~~~~  746 (960)
T KOG1938|consen  702 ETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----K-----------PWLR-------------------QRQW  746 (960)
T ss_pred             hhhhhccccCCCcccccCCCceeeeeeeEecccccc-----c-----------chHH-------------------hhhh
Confidence            011111223345688999999999999999996550     1           1122                   1111


Q ss_pred             ccCCceEEEEEEEEeCCCCCceEEEEEEeeecceEEeecCCCcccCCccccccccEEEEEEEEEecCCCCCCCCCCCCCC
Q 002942          524 SSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPS  603 (863)
Q Consensus       524 ~s~~~~~ll~v~V~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~~~~~~~~l~p~q~~~~~f~i~~~~~~~~~~~~~~~~~  603 (863)
                      +.       .+...|.....-..+++++.+.-.|.....+.-.+..++.....++.++.+++.+.+...++.+++.    
T Consensus       747 r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~~~~~~~ls~~~~~~~~~~~~~e~e~~----  815 (960)
T KOG1938|consen  747 RR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAFTPSGKNLSRTSVSFIGRAVEIESEQP----  815 (960)
T ss_pred             hh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCccccCccccccceeeeccccccccccccCC----
Confidence            11       3334444444557778888887778887776555556667778899999999888888766543332    


Q ss_pred             ccccCceeecCCCccccccCCCcchhhhhhhhhh----cccccCCCCcccEEEEecccccCCCCCCCCCccccceeeecc
Q 002942          604 RLLGSDVSLQGTADTLFDISGSPLADFHAHERLL----QRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHC  679 (863)
Q Consensus       604 ~~~~~d~~l~~~~~~~~~~s~~P~~~f~~~~~~~----~~~~~~~~~~~~ii~~w~a~~~~~~~~~~~~~~~g~~h~~~~  679 (863)
                        .+.-         ++..+..++.+||..-.-.    +.-....+++  |++.|+|++++|+++.   ..+|       
T Consensus       816 --i~~~---------~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~~--i~~~w~a~vv~~eg~~---~~~g-------  872 (960)
T KOG1938|consen  816 --IVAR---------LVPLSQGETIKFFWLTSTTEVTPPAEIQSTMDT--IVILWKANVVNDEGVT---RFIG-------  872 (960)
T ss_pred             --cccc---------eeeccCCcchhhhhhccccccCCChhhccChhh--HHHhccccccccccee---eecC-------
Confidence              1121         2333444444444331100    0001222322  8899999999998632   2333       


Q ss_pred             cccCCCcEEEEEecCceeeccCCCCceeEeEEEEEEeCCCccEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccc
Q 002942          680 SILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDV  759 (863)
Q Consensus       680 ~~~~~~~i~~~l~~p~~i~h~F~~~~c~vpv~l~l~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  759 (863)
                                   ++-++.|.|....|.+..++.+.|.++..-+    +.+.-..        -+.+-...+++-||.+|
T Consensus       873 -------------~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~----t~~~~~~--------~p~t~~~~n~~~~~~~v  927 (960)
T KOG1938|consen  873 -------------PFVKLKKLFKTDSCLSSLRISCETTSKEISH----TADHLCE--------LPITLLISNNDLAWRPV  927 (960)
T ss_pred             -------------CcceehhhccCCcccccchhhhhhhhhhcch----hhhhhhc--------ccchhhhcCCccccccc
Confidence                         4455666666666666666666666653221    2211111        01222344556666655


Q ss_pred             cccccceecccCCccccccCCccCccCceEEeccccceEEeCCCceeEEEeEEEE
Q 002942          760 PVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCL  814 (863)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~  814 (863)
                      +....-                    .  .|.|+++||+|++++|.++++|+|||
T Consensus       928 ~~~~~~--------------------~--~w~~~~~~k~q~~~~~~~~~~m~~~~  960 (960)
T KOG1938|consen  928 SVSIEE--------------------S--SWIGRPVYKQQIGILEEASLEMKWKI  960 (960)
T ss_pred             chhhhh--------------------h--cccCCcceeeeecccccceeeeEecC
Confidence            433221                    0  29999999999999999999999986

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] Back     alignment and domain information
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>KOG2625 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 78/559 (13%), Positives = 177/559 (31%), Gaps = 132/559 (23%)

Query: 142 EVVKPRLPIIN-ISSLKVIFEDHRTYASAEAANV-RESLWRSLEEDMIPSLSTARSN-WL 198
           E  +P +     I     ++ D++ +A     NV R   +  L +    +L   R    +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQ----ALLELRPAKNV 153

Query: 199 ELQSKLIMKKFEESNICVAGEPVK-VDIEFKNPLQIP-ISISN-------ISLICELSTR 249
            +     +    ++   VA +      ++ K   +I  +++ N       + ++ +L  +
Sbjct: 154 LIDG---VLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 250 SDEM---ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV-DISLGGAETILVQL 305
            D      SD +S+     +  +++L         +     L  V +     A  +  ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 306 MVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL--KFIVI 363
           ++T + + +   +        SL    +    L   +               L  K++  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDE------------VKSLLLKYLDC 313

Query: 364 K--SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDM 421
           +   LP+     +P      A  +R    +     D        K++     S+   +  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWKHVNCDKLTTIIESSLNVLE-- 367

Query: 422 TKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKIS 481
               PA  +KM           F+++  +V  FP    I   T LL  +W+         
Sbjct: 368 ----PAEYRKM-----------FDRL--SV--FPPSAHI--PTILLSLIWFD-------- 398

Query: 482 LSITIYYEMGD-VSSVIKYRLLRMHYNLEV--LPSLNVSFQISPWSSRLQQYLVRMDVVN 538
               I  ++   V+ + KY L+          +PS+ +  ++        +Y +   +V+
Sbjct: 399 ---VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KLENEYALHRSIVD 451

Query: 539 Q-TSSENFQIHQLSS----------VG-HQWEISLLQPFDSIFPSESLFAGQALSCFFM- 585
                + F    L            +G H   I   +    +F    +F    L   F+ 
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFR--MVF----LDFRFLE 504

Query: 586 --LKNRGESSTSSDDTSSPSRLLGSDVSLQGT----ADTLFDISGSPLADF--------- 630
             +++     T+ + + S    L   +          D  ++   + + DF         
Sbjct: 505 QKIRHDS---TAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 631 -HAHERLLQRVSQDDTNTV 648
              +  LL+     +   +
Sbjct: 561 CSKYTDLLRIALMAEDEAI 579
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query863
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.73
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 96.13
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.08
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 95.2
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 94.94
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 94.85
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 94.62
2q3z_A687 Transglutaminase 2; transglutaminase 2, tissue tra 94.0
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 93.96
1vjj_A692 Protein-glutamine glutamyltransferase E; transglut 93.68
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 93.62
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 93.61
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 93.6
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 93.51
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 93.44
2xzz_A102 Protein-glutamine gamma-glutamyltransferase K; 2.3 93.38
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 93.3
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 93.2
3q49_B137 STIP1 homology and U box-containing protein 1; E3 93.14
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 93.13
1g0d_A695 Protein-glutamine gamma-glutamyltransferase; tissu 93.05
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 93.05
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 93.01
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 93.01
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 92.96
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 92.88
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 92.46
3idu_A127 Uncharacterized protein; all beta-protein, structu 92.42
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 92.34
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 92.26
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 92.23
3q15_A378 PSP28, response regulator aspartate phosphatase H; 92.19
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 92.18
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 91.94
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 91.86
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 91.74
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 91.68
1ex0_A731 Coagulation factor XIII A chain; transglutaminase, 91.64
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 91.59
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 91.49
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 91.45
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 91.22
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 91.14
1g0d_A695 Protein-glutamine gamma-glutamyltransferase; tissu 91.09
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 91.08
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 90.96
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 90.93
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 90.89
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 90.79
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 90.66
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 90.6
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 90.48
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 90.41
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 90.01
3k9i_A117 BH0479 protein; putative protein binding protein, 89.92
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 89.9
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 89.88
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 89.82
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 89.8
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 89.68
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 89.65
1row_A109 SSP-19, MSP-domain protein like family member; bet 89.55
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 89.52
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 89.42
1ex0_A731 Coagulation factor XIII A chain; transglutaminase, 89.09
2q3z_A687 Transglutaminase 2; transglutaminase 2, tissue tra 89.06
1m1s_A116 WR4; structural genomics, major sperm protein, bio 89.01
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 88.91
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 88.89
4eqf_A365 PEX5-related protein; accessory protein, tetratric 88.79
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 88.64
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 88.42
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 88.29
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 88.21
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 88.1
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 88.1
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 88.0
3u4t_A272 TPR repeat-containing protein; structural genomics 87.89
4gyw_A723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 87.88
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 87.84
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 87.81
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 87.56
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 87.56
2l6j_A111 TPR repeat-containing protein associated with HSP; 87.16
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 87.13
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 87.09
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 87.08
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 87.08
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 87.02
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 86.97
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 86.9
4i17_A228 Hypothetical protein; TPR repeats protein, structu 86.88
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 86.85
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 86.75
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 86.7
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 86.59
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 86.43
2l6j_A111 TPR repeat-containing protein associated with HSP; 86.35
3q15_A378 PSP28, response regulator aspartate phosphatase H; 86.31
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 86.22
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 86.06
1vjj_A692 Protein-glutamine glutamyltransferase E; transglut 85.89
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 85.65
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 85.65
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 85.49
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 85.42
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 85.21
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 85.18
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 85.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 84.96
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 84.91
3u3w_A293 Transcriptional activator PLCR protein; ternary co 84.51
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 84.47
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 84.38
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 84.27
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 83.96
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 83.88
4eqf_A365 PEX5-related protein; accessory protein, tetratric 83.59
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 83.26
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 83.23
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 82.89
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 82.82
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 82.78
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 82.75
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 82.67
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 82.61
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 82.32
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 82.1
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 81.74
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 81.4
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 80.61
2gw1_A514 Mitochondrial precursor proteins import receptor; 80.53
3u3w_A293 Transcriptional activator PLCR protein; ternary co 80.46
2gw1_A514 Mitochondrial precursor proteins import receptor; 80.37
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 80.27
2l0d_A114 Cell surface protein; structural genomics, northea 80.21
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 80.17
3u4t_A272 TPR repeat-containing protein; structural genomics 80.09
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
Probab=96.73  E-value=0.012  Score=62.52  Aligned_cols=126  Identities=15%  Similarity=0.100  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCC------------------c
Q 002942            9 QQNATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPP------------------M   65 (863)
Q Consensus         9 ~~~A~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~pp------------------m   65 (863)
                      ..-|..+---.+.+++..|.|.+|...+.++..     .+....|-.+.++|.||......                  .
T Consensus        32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~  111 (307)
T 2ifu_A           32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT  111 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence            344555555556788888999999888877553     12245677778888877764321                  1


Q ss_pred             chhhHhHHHhhccchhcCCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942           66 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE  135 (863)
Q Consensus        66 ~RKyAfhmVLAGhRyskagqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~  135 (863)
                      .+..+-.+.-.|.-|.+ |+...|+.+|++|+.+|...+-......++..||..+..+|+++.|+.+|.+
T Consensus       112 ~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          112 PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            23446667778888988 9999999999999999987654444456788999999999999999988755
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A* Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Back     alignment and structure
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A* Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query863
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 97.03
d1ex0a3100 Transglutaminase, two C-terminal domains {Human (H 96.34
d1g0da3101 Transglutaminase, two C-terminal domains {Red sea 96.29
d1vjja399 Transglutaminase, two C-terminal domains {Human (H 95.5
d2q3za398 Transglutaminase, two C-terminal domains {Human (H 95.45
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 94.77
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 90.47
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 90.38
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 89.71
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 89.7
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 89.06
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 88.88
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 88.69
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 88.11
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 87.4
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 86.85
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 86.68
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 84.8
d1hz4a_366 Transcription factor MalT domain III {Escherichia 84.75
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 84.66
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 84.17
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 84.14
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 83.55
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 82.84
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 82.78
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 82.57
d2q3za398 Transglutaminase, two C-terminal domains {Human (H 81.69
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 81.66
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 80.39
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.0017  Score=66.07  Aligned_cols=131  Identities=13%  Similarity=0.094  Sum_probs=102.2

Q ss_pred             CcchhhH--HHHHHHHHHHHHHhccchHHHHHHHHhHhC-----cchhhHHHHHHHHHhhhhccCCCc-----chh----
Q 002942            5 GSSGQQN--ATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKPPM-----LHK----   68 (863)
Q Consensus         5 ~~~~~~~--A~R~all~~E~lk~~~~~~eAa~~Lir~ts-----ed~L~SALLLEQAA~c~L~~~ppm-----~RK----   68 (863)
                      |+....|  |.-+=.-.+.+++..+.|.+|...+.++..     .+.--.|-.+..+|.||..+..+.     ++|    
T Consensus        27 ~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~  106 (290)
T d1qqea_          27 GSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI  106 (290)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH
Confidence            3445445  666777788999999999999999998763     222557889999999998765432     222    


Q ss_pred             ---------hHhHHHhhccchhc-CCCcHHHHHHHHHHHhhhcCCCccchhhhHHHHHHHHHHHhCCHHHHHHHHHH
Q 002942           69 ---------YGFHLVLSGDRYKK-CDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE  135 (863)
Q Consensus        69 ---------yAfhmVLAGhRysk-agqr~hAlRCY~~A~~vY~~~~W~~~edHI~~tLGrq~~~Lg~~~~Av~h~l~  135 (863)
                               .+..+...|..|.+ .|....|+.+|.+|+.+|...++.....-+...+|..+..+|+++.|+..+-+
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence                     24445566677754 69999999999999999998888776677889999999999999999988755
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure