Citrus Sinensis ID: 002945

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860---
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQV
ccccccccccEEEEEEEEEccccEEEEEEccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHHccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEcccccEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccEEEEEcccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEccccccccccccHHcccccccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEccccHHHHHHccccccccccccccEEEEEEEcccEEEEEEcccccEEEEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEccccHHHHHHHHccEEEEEcccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccEEEEccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHcccccEEEEEEEEEccccccccccccccEEEEEEEEcccccccccccccc
cccccccccccEEEEEEEEEcccEEEEEccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHcccHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEcccccccHHHHHHHHHccccEEEcccHcccccHHHHHHHHHHHHHHHHHHccHcccccccccHHHHcccccEEEEEEEEcccEEEEEEcccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccEEEcccccccHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccHHHHHHHHHcccEEcccccHcccccHHHHHHHHHHHHHHHHcHHHcccccccccEEEEEEccccEEEEEEcEEEcccccccccccHHHHHcHHHccccccccccHHHHHHHHHHHHcccccEEEEEEEEEcccccEEcccccccEEEEEEEccccccEHHHHHHcc
matpaaagggwyrarvkavpsgdSLVITAlsnpnpgpprektltlssiitprlarrggldepfawDSREFLRKLCigkevtfrvdyavpnigrefgtvilgDKNVAMLVVSEGWAKVkeqgsqkgeasPFLAELLRLEEQAKLQGlgrwskvpgaaeasirnlppsaigdssnfNAMALLdankgrpmqgiveqardgstlrvyllpefQFVQVFVAGIqapavarrpaaivdtdteetngdvsaaeavAPLNSAQRLAASTasagqqstdepfalDAKYFTEMRVLNREVRIVLEGVDKFKNLIgsvfypdgetAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRmwtnyvppqsnskaihdqnftgKVVEVVSGdciivaddsipygNALAERRVNlssircpkignprkdekpAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVeaapvaagakgpagtkgpagtkgqaaakgpageesvgatetriIDFGSifllspikgegddasavaqsnaagqpagVNVAELVVSRglgnvinhrdfeerSNYYDALLAAEARAKAgkkgcysskeppvmhiqdltmapvkkardflpflqrsrriPAVVEYVLSGhrfkvlipketcsiafsfsgvrcpgrnerySNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQtsfgsdripdshLLEQAEKSAKSQKLKIWENYVESVNDKFEVFYIDygnqelvpynklrpidpslsstpplaqlcslayikipaledeygpEAAEFLnehtynssNEFRALVEErdssggklkgqgtgTLLHVTLVAVDAEISINTLMVQV
matpaaagggwyrARVKAVPSGDSLVITAlsnpnpgpprekTLTLSSIItprlarrggldepfawdSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVkeqgsqkgeASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAStasagqqstdepFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVppqsnskaihdqNFTGKVVEVVSGDCIIVADDSIPYGNALAErrvnlssircpkignprkdekpaaYAREAREFLrtrligrqvnvqmeySRKVVVEAApvaagakgpagtkgpagtKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLpflqrsrriPAVVEYVLSGHRFKVLIPKETCSIAfsfsgvrcpgrnERYSNEALLLMRQKILQRDVEIEVETVDRTGtflgslwesrTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSaksqklkiWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQV
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGiqapavarrpaaivDTDTEETNGDVSAAEAVAPLNSAQRLaastasagqqstDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEaapvaagakgpagtkgpagtkgqaaakgpagEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDallaaearakagkkgCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSggklkgqgtgtllHVTLVAVDAEISINTLMVQV
*********GWYRARVKAVP**DSLVIT****************LSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKV*************LAELLRL*****LQGLGRW*****************************************IVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIV*****************************************FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANM*****************KTRLRMWTNYVP******AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP****************EAREFLRTRLIGRQVNVQMEYSRKVVVEAA************************************ETRIIDFGSIFLLSPIK******************AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAK****GCY******VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF**********************LKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDP****TPPLAQLCSLAYIKIPALEDEYGPEAAEFLNE**************************GTGTLLHVTLVAVDAEISINTLM***
**********WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAST******S*DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN*****************GKVVEVVSGDCIIVADDSIPYGNALAERRVNL********************AREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGS***********************GQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLA**********************IQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTP*******************YGPEAAEFLNEHTYNSSNEFRALVEERD********QGTGTLLHVTLVAVDAEISINTLMVQV
**********WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAK**********ASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSA***************DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNP********YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVA*******************************ATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEA**********SSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ*********LKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQV
*********GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS******EASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV*********************************************TDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLS*********************AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQV
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MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query863 2.2.26 [Sep-21-2011]
Q78PY7 910 Staphylococcal nuclease d yes no 0.707 0.671 0.353 1e-103
Q66X93 909 Staphylococcal nuclease d yes no 0.707 0.672 0.351 1e-103
Q863B3 910 Staphylococcal nuclease d yes no 0.707 0.671 0.347 1e-103
Q5REU4 910 Staphylococcal nuclease d yes no 0.707 0.671 0.347 1e-102
Q7KZF4 910 Staphylococcal nuclease d yes no 0.707 0.671 0.345 1e-102
Q7ZT42 897 Staphylococcal nuclease d yes no 0.716 0.688 0.348 1e-101
Q9Y7U7878 Staphylococcal nuclease d yes no 0.443 0.436 0.281 1e-34
O60168230 Probable endonuclease C19 no no 0.198 0.743 0.237 3e-07
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 Back     alignment and function desciption
 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 271/766 (35%), Positives = 399/766 (52%), Gaps = 155/766 (20%)

Query: 13  RARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL---------DEPF 63
           R  VK V SG ++++     P  GPP E+ + LS+I    LARR            DEP+
Sbjct: 21  RGIVKMVLSGCAIIVRG--QPRGGPPPERQINLSNIRAGNLARRAAATQPDGKDTPDEPW 78

Query: 64  AWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGD----KNVAMLVVSEGWAKVKE 119
           A+ +REFLRK  IGKEV F ++   P  GRE+G + LG     +N+A  +V+EG A  +E
Sbjct: 79  AFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLATRRE 137

Query: 120 QGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMAL 179
            G +    +P    L   EEQAK    G WS+  G    +IR+L    I +  +F     
Sbjct: 138 -GMRAN--NPEQNRLSECEEQAKASKKGMWSE--GNGSHTIRDLK-YTIENPRHF----- 186

Query: 180 LDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEET 239
           +D++  +P+  I+E  RDGS +R  LLP    V V ++GI+ P   R           ET
Sbjct: 187 VDSHHQKPVNAIIEHVRDGSVVRALLLPGHHLVTVMLSGIKCPTFRR-----------ET 235

Query: 240 NGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVD 299
           +G                            T EPFA +AK+FTE R+L R+V+I+LE   
Sbjct: 236 DGS--------------------------ETPEPFAAEAKFFTESRLLQRDVQIILESCH 269

Query: 300 KFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRL 359
             +NL+G++ +P+G    ++   L++ G A+ ++WS  +    A++ L+AA+  AK+ RL
Sbjct: 270 N-QNLLGTILHPNG----NITELLLKEGFARCVDWSIAVYTRGAEK-LRAAERFAKERRL 323

Query: 360 RMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP 419
           R+W +YVPP +N     D+ F  KV++V++ D I+V  +S  Y      + ++LSSIR P
Sbjct: 324 RIWRDYVPPTANLDQ-KDKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPP 376

Query: 420 K-----IGNPRKDEKP---AAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGA 471
           +     I +  K  +P     Y  EAREFLR +LIG++VNV ++Y R     A+P     
Sbjct: 377 RLEGDNIQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRP----ASP----- 427

Query: 472 KGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSN 531
                          A    PA  E   AT T                            
Sbjct: 428 ---------------ATETVPAFSERTCATVT---------------------------- 444

Query: 532 AAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 590
                 G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P
Sbjct: 445 ----IGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVP 500

Query: 591 VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVR 650
           +  + D++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ 
Sbjct: 501 IHRVADIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIE 559

Query: 651 CP--GRN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVA 700
           CP   RN        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++
Sbjct: 560 CPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLS 619

Query: 701 VILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746
           V+L+E  L+K+   F ++R      L  AE++AK +K K+W +Y E
Sbjct: 620 VLLVEQALSKVH--FTAERSAYYKPLLSAEEAAKQRKEKVWAHYEE 663
Functions as a bridging factor between STAT6 and the basal transcription factor. Plays a role in PIM1 regulation of MYB activity. Plays a role in cell viability (By similarity). Functions as a transcriptional coactivator for STAT5.
Mus musculus (taxid: 10090)
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 Back     alignment and function description
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 Back     alignment and function description
>sp|O60168|LCL3_SCHPO Probable endonuclease C19F8.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F8.04c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query863
224136368 984 predicted protein [Populus trichocarpa] 0.820 0.719 0.749 0.0
307135996 988 short-chain dehydrogenase/reductase [Cuc 0.822 0.718 0.738 0.0
449440482 988 PREDICTED: staphylococcal nuclease domai 0.822 0.718 0.74 0.0
356516458 990 PREDICTED: staphylococcal nuclease domai 0.826 0.720 0.741 0.0
356508886 990 PREDICTED: staphylococcal nuclease domai 0.826 0.720 0.734 0.0
225447723 1000 PREDICTED: staphylococcal nuclease domai 0.825 0.712 0.732 0.0
356527378 995 PREDICTED: staphylococcal nuclease domai 0.828 0.718 0.732 0.0
357464897 992 nuclease domain-containing protein [Medi 0.826 0.718 0.728 0.0
224122258 978 hypothetical protein POPTRDRAFT_806590 [ 0.816 0.720 0.730 0.0
356512924 991 PREDICTED: staphylococcal nuclease domai 0.827 0.720 0.729 0.0
>gi|224136368|ref|XP_002322312.1| predicted protein [Populus trichocarpa] gi|222869308|gb|EEF06439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1139 bits (2945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/751 (74%), Positives = 633/751 (84%), Gaps = 43/751 (5%)

Query: 1   MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLD 60
           MAT  A   GWYR +VKAVPSGDSLVI A+++  PGPP EKT+TLSS+I PRLARRGG+D
Sbjct: 1   MATSTAGATGWYRGKVKAVPSGDSLVIMAMTSSKPGPPPEKTITLSSLIAPRLARRGGVD 60

Query: 61  EPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120
           EPFAW+SRE+LRKLCIGKEVTF+VDYAVP+IGREFG+V LG+KNVA+LVVSEGWAKV+EQ
Sbjct: 61  EPFAWNSREYLRKLCIGKEVTFKVDYAVPSIGREFGSVFLGEKNVALLVVSEGWAKVREQ 120

Query: 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALL 180
           G QKGEASPFLAELLRLEEQAK QGLGRWSK PGA+EASIRNLPPSAIGDSSNF+AM LL
Sbjct: 121 GQQKGEASPFLAELLRLEEQAKQQGLGRWSKAPGASEASIRNLPPSAIGDSSNFDAMGLL 180

Query: 181 DANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAI-----VDTD 235
            ANKG PM+ IVEQ RDGST+RVYLLP+FQFVQVFVAGIQAP++ +R AAI       T 
Sbjct: 181 AANKGTPMECIVEQVRDGSTIRVYLLPDFQFVQVFVAGIQAPSMGKR-AAIETVGETVTT 239

Query: 236 TEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVL 295
           +  TNGD S  E  APL SAQRLAAS A    +   +PF ++AKYFTE+R LNR+VRIVL
Sbjct: 240 SNGTNGDTS--ETRAPLTSAQRLAASAAPP--EVAPDPFGMEAKYFTELRTLNRDVRIVL 295

Query: 296 EGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAK 355
           EGVDKF NLIGSV+YPDGE+AKDLA+ELVENGLAK++EWSANMMEEDAKR+LK A+LQAK
Sbjct: 296 EGVDKFSNLIGSVYYPDGESAKDLALELVENGLAKFVEWSANMMEEDAKRQLKTAELQAK 355

Query: 356 KTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSS 415
           K+RLR WTNYVPP +NSKAIHDQNFTGKVVEVVSGDC+IVADDS+PYG+ LAERRVNLSS
Sbjct: 356 KSRLRFWTNYVPPATNSKAIHDQNFTGKVVEVVSGDCVIVADDSVPYGSPLAERRVNLSS 415

Query: 416 IRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPA 475
           IRCPK+GNPR+DEKPA YAREA+EFLRTRLIGRQVNV+MEYSRK+               
Sbjct: 416 IRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVRMEYSRKM--------------- 460

Query: 476 GTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQ 535
                  T G  AA  P         + R++DFGSIFLLSP KG   D ++ A S AAGQ
Sbjct: 461 -------TDGPTAAPVPG--------DARVMDFGSIFLLSPTKG---DEASTAPSTAAGQ 502

Query: 536 PAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQ 595
             G+NVAELVVSRG G VI HRDFEERSN+YDALLAAE+RA AGKKG +S+K+PPVMHI 
Sbjct: 503 QPGINVAELVVSRGFGTVIRHRDFEERSNFYDALLAAESRAIAGKKGIHSAKDPPVMHIT 562

Query: 596 DLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN 655
           DLT +  KKA+DFLPFL RSRRI AVVEYVLSGHRFK+LIPKETCSIAFSFSGVRCPGR+
Sbjct: 563 DLTTSSSKKAKDFLPFLHRSRRISAVVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGRD 622

Query: 656 ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF 715
           E YS EA+ LMR+KI+QRDVEIEVETVDRTGTFLGSLWESRTN+AV LLEAGLA+ QTSF
Sbjct: 623 EPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMAVTLLEAGLARFQTSF 682

Query: 716 GSDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746
           G+DRIPD+HLLEQAE+SAK QKLKIWENYVE
Sbjct: 683 GTDRIPDAHLLEQAEQSAKRQKLKIWENYVE 713

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|307135996|gb|ADN33852.1| short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449440482|ref|XP_004138013.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] gi|449522262|ref|XP_004168146.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516458|ref|XP_003526911.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356508886|ref|XP_003523184.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225447723|ref|XP_002273150.1| PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] gi|296088151|emb|CBI35621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527378|ref|XP_003532288.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357464897|ref|XP_003602730.1| nuclease domain-containing protein [Medicago truncatula] gi|355491778|gb|AES72981.1| nuclease domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224122258|ref|XP_002318790.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] gi|222859463|gb|EEE97010.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512924|ref|XP_003525164.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query863
TAIR|locus:2159218 985 Tudor2 "TUDOR-SN protein 2" [A 0.530 0.464 0.675 9.2e-282
ZFIN|ZDB-GENE-030131-3124 913 snd1 "staphylococcal nuclease 0.264 0.249 0.385 2.5e-94
UNIPROTKB|Q863B3 910 SND1 "Staphylococcal nuclease 0.266 0.252 0.379 8.4e-93
MGI|MGI:1929266 910 Snd1 "staphylococcal nuclease 0.238 0.226 0.404 1.1e-92
RGD|631340 909 Snd1 "staphylococcal nuclease 0.238 0.226 0.404 3.6e-92
UNIPROTKB|Q66X93 909 Snd1 "Staphylococcal nuclease 0.238 0.226 0.404 3.6e-92
UNIPROTKB|Q7KZF4 910 SND1 "Staphylococcal nuclease 0.238 0.226 0.404 5.9e-92
UNIPROTKB|E2RH91 910 SND1 "Uncharacterized protein" 0.238 0.226 0.404 1.5e-91
FB|FBgn0035121926 Tudor-SN "Tudor-SN" [Drosophil 0.217 0.203 0.411 7.6e-80
WB|WBGene00006626914 tsn-1 [Caenorhabditis elegans 0.229 0.216 0.375 9.8e-77
TAIR|locus:2159218 Tudor2 "TUDOR-SN protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1610 (571.8 bits), Expect = 9.2e-282, Sum P(3) = 9.2e-282
 Identities = 315/466 (67%), Positives = 374/466 (80%)

Query:     1 MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLD 60
             MAT AA    W + RVKAV SGD LVITAL++   GPP EKT+TLSS++ P++ARRGG+D
Sbjct:     1 MATGAATENQWLKGRVKAVTSGDCLVITALTHNRAGPPPEKTITLSSLMAPKMARRGGID 60

Query:    61 EPFAWDSREFLRKLCIGKEVTFRVDYAVPNI-GREFGTVILGDKNVAMLVVSEGWAKVKE 119
             EPFAW+SREFLRKLCIGKEV F+VDY V  I GREFG+V LG++N+A LVV  GWAKV+ 
Sbjct:    61 EPFAWESREFLRKLCIGKEVAFKVDYKVEAIAGREFGSVYLGNENLAKLVVQNGWAKVRR 120

Query:   120 QGSQ-KGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMA 178
              G Q + + SP++AEL +LEEQA+ +G GRWSKVPGAAEASIRNLPPSA+GDS NF+AM 
Sbjct:   121 PGQQNQDKVSPYIAELEQLEEQAQQEGFGRWSKVPGAAEASIRNLPPSAVGDSGNFDAMG 180

Query:   179 LLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGXXXXXXX---XXXXXXXDTD 235
             LL A+KG+PM+GIVEQ RDGST+RVYLLPEFQFVQVFVAG                 D D
Sbjct:   181 LLAASKGKPMEGIVEQVRDGSTIRVYLLPEFQFVQVFVAGLQAPSMGRRQSTQEAVVDPD 240

Query:   236 -TEETNGDVSAAEAVAPLNSAQRLXXXXXXXXXXXXDEPFALDAKYFTEMRVLNREVRIV 294
              T  +NGD SA E   PL +AQRL            D PFA++AKYFTE+RVLNR+VRIV
Sbjct:   241 VTATSNGDASA-ETRGPLTTAQRLAASAASSVEVSSD-PFAMEAKYFTELRVLNRDVRIV 298

Query:   295 LEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQA 354
             LEGVDKF NLIGSV+Y DG+T KDL +ELVENGLAKY+EWSANM++E+AK++LKA +LQ 
Sbjct:   299 LEGVDKFNNLIGSVYYSDGDTVKDLGLELVENGLAKYVEWSANMLDEEAKKKLKATELQC 358

Query:   355 KKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLS 414
             KK R++MW NYVPP SNSKAIHDQNFTGKVVEVVSGDC++VADDSIP+G+ +AERRV LS
Sbjct:   359 KKNRVKMWANYVPPASNSKAIHDQNFTGKVVEVVSGDCLVVADDSIPFGSPMAERRVCLS 418

Query:   415 SIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKV 460
             SIR PK+GNPR++EKPA YAREA+EFLR +LIG +V VQMEYSRK+
Sbjct:   419 SIRSPKMGNPRREEKPAPYAREAKEFLRQKLIGMEVIVQMEYSRKI 464
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0004518 "nuclease activity" evidence=ISS
GO:0016442 "RNA-induced silencing complex" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0031047 "gene silencing by RNA" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP
GO:0009845 "seed germination" evidence=IMP
GO:0003723 "RNA binding" evidence=TAS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009306 "protein secretion" evidence=IGI
GO:0009651 "response to salt stress" evidence=IGI;RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00006626 tsn-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 3e-24
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 1e-23
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 2e-23
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-22
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-20
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 6e-20
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 8e-15
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 1e-14
pfam00567118 pfam00567, TUDOR, Tudor domain 2e-13
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 4e-12
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 4e-11
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 8e-11
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 3e-08
cd0450848 cd04508, TUDOR, Tudor domains are found in many eu 5e-06
smart0033357 smart00333, TUDOR, Tudor domain 2e-05
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 4e-05
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 1e-04
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 4e-04
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 7e-04
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information 
 Score = 98.9 bits (247), Expect = 3e-24
 Identities = 51/144 (35%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG----GLDEPFAWDS 67
            R  V+ V  GD++ +       P      T+ LS I  P  AR        DEPF  ++
Sbjct: 3   IRGVVERVIDGDTIRV--RLPKGP----LITIRLSGIDAPETARPNKGDGTPDEPFGEEA 56

Query: 68  REFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDK-NVAMLVVSEGWAKVKEQGSQKGE 126
           +EFL+KL +GK+V   VD      GR  GTV L    N+A  +V EG AKV        +
Sbjct: 57  KEFLKKLLLGKKVQVEVDSKDRY-GRFLGTVYLNGGNNIAEELVKEGLAKVYR---YADK 112

Query: 127 ASPFLAELLRLEEQAKLQGLGRWS 150
                 ELL  EE AK    G WS
Sbjct: 113 DEYVYDELLEAEEAAKKARKGLWS 136

Length = 137
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>gnl|CDD|197660 smart00333, TUDOR, Tudor domain Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 863
KOG2039875 consensus Transcriptional coactivator p100 [Transc 100.0
KOG2039875 consensus Transcriptional coactivator p100 [Transc 99.95
smart00318138 SNc Staphylococcal nuclease homologues. 99.92
smart00318138 SNc Staphylococcal nuclease homologues. 99.92
PRK06518177 hypothetical protein; Provisional 99.91
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.91
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.9
PRK06518177 hypothetical protein; Provisional 99.83
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.82
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.81
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.77
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.73
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 98.3
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 96.53
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 95.75
KOG2279608 consensus Kinase anchor protein AKAP149, contains 94.69
smart0074361 Agenet Tudor-like domain present in plant sequence 86.16
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-67  Score=633.48  Aligned_cols=714  Identities=46%  Similarity=0.733  Sum_probs=610.9

Q ss_pred             ceEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCC-CCCChhHHHHHHHHHhhcCCCeEEEEEceec
Q 002945           10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAV   88 (863)
Q Consensus        10 ~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~-~~~ep~a~eAre~Lr~lliGk~V~~~~~~~~   88 (863)
                      .+..|.|++|.|||.+++++.  +..+++++..++|+++.+|++.+++ +-++||+|++++|+|++++||.|.|..++-.
T Consensus         3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~   80 (875)
T KOG2039|consen    3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS   80 (875)
T ss_pred             eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence            355799999999999999984  4568889999999999999999874 2379999999999999999999999999844


Q ss_pred             cCCCcEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcCCCCCCcccccccCCCCcC
Q 002945           89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI  168 (863)
Q Consensus        89 ~~~gR~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs~~~~~~~~~~r~~~~~~~  168 (863)
                      ..++|.+|.+++++.+.++.|+..||+.+++...   ...++...+...|.+|++.++|+|+.    .....+++.++  
T Consensus        81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~----~~~~~~~~~~~--  151 (875)
T KOG2039|consen   81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSK----LDHFIRNLKDS--  151 (875)
T ss_pred             cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhccccccc----cccceeecccc--
Confidence            5679999999999999999999999999987763   22678889999999999999999993    23345778776  


Q ss_pred             CCCchhhHHHHhhhhcCCcccEEEEEeccCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccc
Q 002945          169 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE  247 (863)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~~Ve~V~dG~-t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~  247 (863)
                          ..++..|+..+.++++.++||+|++|+ +.||.+.+....++++|+|+.||.+..+.           +|      
T Consensus       152 ----~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~------  210 (875)
T KOG2039|consen  152 ----ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DG------  210 (875)
T ss_pred             ----ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CC------
Confidence                346788999888999999999999999 68888778888899999999999987532           11      


Q ss_pred             cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcC
Q 002945          248 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG  327 (863)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~ep~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~la~V~~~~g~~~~di~~~LL~~G  327 (863)
                                         .+...+||+.+|+.|++.++++|.+.|.+.+...+..++|+|.+++|+    +++.|+.+|
T Consensus       211 -------------------~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~  267 (875)
T KOG2039|consen  211 -------------------SPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG  267 (875)
T ss_pred             -------------------CCCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence                               012358999999999999999999999999998887889999999984    999999999


Q ss_pred             cEEEEecccccchHHHHHHHHHHHHHHHHhcCcc-CcCCCCCCCCcccccccceeeEEEEEeeCcEEEEEcCCCCCCCCc
Q 002945          328 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL  406 (863)
Q Consensus       328 lA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-W~~~~~~~~~~~~~~~~~~~g~V~~V~sgd~i~I~~~~~~~~~~~  406 (863)
                      ++++.+|+....+.+....++.+|..++..+..+ |++|..+....+....+.|.+.|+++.++|++.+..+.   |+  
T Consensus       268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~--  342 (875)
T KOG2039|consen  268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS--  342 (875)
T ss_pred             hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence            9999999999887777677999999999999999 99999988877766678899999999999999999865   22  


Q ss_pred             cceEEEeeeccCCCCCCCCCCCc--cchhhHHhHHHHHhhccCcEEEEEEeeeecccccccccccCCCCCCCCCCCCCcc
Q 002945          407 AERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK  484 (863)
Q Consensus       407 ~e~~v~Lssi~~P~~~~~~~~~~--~e~~~~earEflR~~~iGk~V~v~vdy~~~~~~~~~~~~~~~~~~~~~~g~~~~~  484 (863)
                       +.++.+++|+.||.+++.+..+  .-||+++|+||+|+++||++|.++++|.++..                ..     
T Consensus       343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------------~~-----  400 (875)
T KOG2039|consen  343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRR----------------EN-----  400 (875)
T ss_pred             -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccc----------------cc-----
Confidence             7899999999999444333333  48999999999999999999999999988741                00     


Q ss_pred             cccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC-Cccccc
Q 002945          485 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERS  563 (863)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nvae~lv~~G~a~v~~~r-~~~~~s  563 (863)
                                      +..  .. +.+.+                      ..|.|+|+.++.+|++++++|| ++..++
T Consensus       401 ----------------~~~--~~-c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s  439 (875)
T KOG2039|consen  401 ----------------VPT--KV-CALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRS  439 (875)
T ss_pred             ----------------ccc--cc-ccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhc
Confidence                            110  01 11111                      1368999999999999999999 467779


Q ss_pred             HHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCcc-ccccccccccccCCccceEEEEEecCCEEEEEecCCCceE
Q 002945          564 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPV-KKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSI  642 (863)
Q Consensus       564 ~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~-~~ak~~l~~~~r~~~l~~~Ve~V~dG~~~~v~lp~~~~~i  642 (863)
                      ..|+.++.+|..+..+++|+|+.+..+.+.+.+.+. .. .++..+++++++...+..+|+++++|+++++++|++.|.+
T Consensus       440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~-~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~  518 (875)
T KOG2039|consen  440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTV-DIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYC  518 (875)
T ss_pred             chhhhhhcchHHHHhhhhhhcccCCCcceeechhhh-hhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeE
Confidence            999999999999999999999987665556777753 33 3344899999999999999999999999999999999999


Q ss_pred             EEEEeeecCCC-------CCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC-CccHHHHHHHcCCEEEeee
Q 002945          643 AFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTS  714 (863)
Q Consensus       643 ~~~LaGI~~P~-------~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~~-~~ni~~~Lv~~GlA~v~~~  714 (863)
                      +|.++|++||+       .+++|+++|..+++.+++++++.+.+..+|+.|+|+++.+.+ +.++...++++||+.++  
T Consensus       519 ~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--  596 (875)
T KOG2039|consen  519 QFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--  596 (875)
T ss_pred             EEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--
Confidence            99999999996       488999999999999999999999999999999999999997 89999999999999996  


Q ss_pred             cCCCCCCChHHHHHHHHHHH-hccccccccccc-----------------------------------------------
Q 002945          715 FGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVE-----------------------------------------------  746 (863)
Q Consensus       715 ~~~~~~~~~~~l~~aE~~Ak-~~r~GiW~~~~~-----------------------------------------------  746 (863)
                      |..+.......|..++..|+ ..+.++|.++..                                               
T Consensus       597 ~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~  676 (875)
T KOG2039|consen  597 FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKI  676 (875)
T ss_pred             hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHH
Confidence            76666666677889999999 889999988755                                               


Q ss_pred             -------------------------------------------cCC-CeEEEEEEeCCceeEEeCCCccCCCCCCCCCCC
Q 002945          747 -------------------------------------------SVN-DKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPP  782 (863)
Q Consensus       747 -------------------------------------------~~~-~~~~V~fIDyGn~e~V~~s~LR~L~~~~~~lPp  782 (863)
                                                                 +.+ ..++|+||||||.+++|+.+|++||+.|..+|+
T Consensus       677 ~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~~~~~V~yiDygn~E~lp~~~l~~lp~~~~~~p~  756 (875)
T KOG2039|consen  677 MTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDPESMEVFYIDYGNIETLPFVRLKPLPPHFSLLPP  756 (875)
T ss_pred             HHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeeccCcceeEEEEecCcccccccccccCCChHHhcCch
Confidence                                                       223 779999999999999999999999999999999


Q ss_pred             ceEEeeeccccCCCCCCCcHHHHHHHHHHhcccCCCEEEEEEEEEcCCCCcccCCCCCceEEEEEEecCCCCchhHhhhc
Q 002945          783 LAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQ  862 (863)
Q Consensus       783 qA~~c~LA~vk~p~~~~~w~~eA~~~f~~~ll~~~k~l~a~V~~~~~~g~~~~~~~~~~~~~v~L~d~~~~~sIN~~Lv~  862 (863)
                      +|++|.|++|++|. ++++.++|+.+|.+..  .++.+++++...-          +++.++++|+...+..++++.|+.
T Consensus       757 ~a~~~~L~~ik~~~-~~~~~e~~i~~l~~~~--~~~~~~~~~~~~i----------~~~~~~~~l~~~~~~~d~~~~l~~  823 (875)
T KOG2039|consen  757 VAQECGLAGIKEPQ-LEDLKEEAIRYLDEDT--LGHKCQVNVELRV----------VGNSLLVTLLYTVEELDVGEELVA  823 (875)
T ss_pred             HHhhhhhhcccCCc-ccchHHHHHHHHHHHh--hcccceeeeeeee----------eccceeEEEeeecCcCChhHhhhh
Confidence            99999999999985 5789999999999984  5777777743222          367889999988778888888875

>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
3bdl_A 570 Crystal Structure Of A Truncated Human Tudor-Sn Len 2e-39
3bdl_A570 Crystal Structure Of A Truncated Human Tudor-Sn Len 4e-04
2wac_A218 Extended Tudor Domain Of Drosophila Melanogaster Tu 2e-04
3omg_A261 Structure Of Human Snd1 Extended Tudor Domain In Co 4e-04
2hqx_A246 Crystal Structure Of Human P100 Tudor Domain Conser 4e-04
2o4x_A217 Crystal Structure Of Human P100 Tudor Domain Length 4e-04
3hej_A143 Crystal Structure Of Staphylococcal Nuclease Varian 5e-04
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 14/221 (6%)
Query: 537 AGVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQ 595
            G+N+AE +VS+GL  VI +R D ++RS++YD                +S KE P+  + 
Sbjct: 128 GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVA 187
Query: 596 DLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--G 653
           D++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP   
Sbjct: 188 DIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA 246
Query: 654 RN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLE 705
           RN        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+L+E
Sbjct: 247 RNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVE 306
Query: 706 AGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746
             L+K+   F ++R      L  AE++AK +K K+W +Y E
Sbjct: 307 HALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEE 345
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn ( P100) Length = 218 Back     alignment and structure
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex With The Symmetrically Dimethylated Arginine Piwil1 Peptide R14me2s Length = 261 Back     alignment and structure
>pdb|2HQX|A Chain A, Crystal Structure Of Human P100 Tudor Domain Conserved Region Length = 246 Back     alignment and structure
>pdb|2O4X|A Chain A, Crystal Structure Of Human P100 Tudor Domain Length = 217 Back     alignment and structure
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+p Cryogenic Temperature Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query863
3bdl_A570 Staphylococcal nuclease domain-containing protein 1e-73
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-42
3bdl_A570 Staphylococcal nuclease domain-containing protein 1e-20
3bdl_A570 Staphylococcal nuclease domain-containing protein 3e-17
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-11
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 1e-14
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 6e-14
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 2e-08
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 2e-04
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 7e-04
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 3e-13
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-09
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 1e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-05
2diq_A110 Tudor and KH domain-containing protein; tudor doma 1e-10
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 5e-10
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 1e-08
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 2e-07
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 1e-09
2d9t_A78 Tudor domain-containing protein 3; structural geno 9e-09
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 3e-07
3s6w_A54 Tudor domain-containing protein 3; methylated argi 4e-07
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 1e-05
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 3e-05
2eqk_A85 Tudor domain-containing protein 4; structural geno 3e-04
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
 Score =  251 bits (641), Expect = 1e-73
 Identities = 151/504 (29%), Positives = 230/504 (45%), Gaps = 109/504 (21%)

Query: 362 WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKI 421
            +  VP  S+     D+ F  KV++V++ D I+V  +S         + ++LSSIR P++
Sbjct: 11  SSGLVPRGSHM----DKQFVAKVMQVLNADAIVVKLNSGD------YKTIHLSSIRPPRL 60

Query: 422 GNPRKDEKPA--------AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 473
                 +K           Y  EAREFLR +LIG++VNV ++Y R               
Sbjct: 61  EGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPA------------- 107

Query: 474 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAA 533
                                 E+V A   R     ++ +                    
Sbjct: 108 ------------------SPATETVPAFSER--TCATVTI-------------------- 127

Query: 534 GQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVM 592
               G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P+ 
Sbjct: 128 ---GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH 184

Query: 593 HIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP 652
            + D      +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP
Sbjct: 185 RVAD-ISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECP 243

Query: 653 ----------GRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVI 702
                        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+
Sbjct: 244 RGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVL 303

Query: 703 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVESVNDKFEVFYIDYGNQ 762
           L+E  L+K+   F ++R      L  AE++AK +K K+W +Y E   ++      +    
Sbjct: 304 LVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERS 361

Query: 763 ELVPYNKLRPIDPS-------LSSTPPLAQLC---SLAYIKIPALEDEYGPE-----AAE 807
                  +  I          + +   L +L           P +E  Y P       A+
Sbjct: 362 ASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAK 421

Query: 808 FLNEHTYNSSNEFRALVEERDSSG 831
           F++   Y      RA VE+ +S  
Sbjct: 422 FVDGEWY------RARVEKVESPA 439
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Length = 78 Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Length = 64 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Length = 59 Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 88 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query863
3bdl_A570 Staphylococcal nuclease domain-containing protein 100.0
3bdl_A570 Staphylococcal nuclease domain-containing protein 100.0
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.93
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.9
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 99.66
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 99.66
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.65
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.57
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 99.51
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.49
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.41
2diq_A110 Tudor and KH domain-containing protein; tudor doma 98.95
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 98.81
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 98.8
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 98.68
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 98.32
2eqk_A85 Tudor domain-containing protein 4; structural geno 97.99
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 97.54
2d9t_A78 Tudor domain-containing protein 3; structural geno 97.46
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 97.23
3s6w_A54 Tudor domain-containing protein 3; methylated argi 97.19
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 97.16
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 97.1
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 93.27
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 91.71
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 84.74
2diq_A110 Tudor and KH domain-containing protein; tudor doma 84.67
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 83.17
3s6w_A54 Tudor domain-containing protein 3; methylated argi 82.92
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 82.78
2eqk_A85 Tudor domain-containing protein 4; structural geno 82.22
3qii_A85 PHD finger protein 20; tudor domain, structural ge 80.46
2d9t_A78 Tudor domain-containing protein 3; structural geno 80.32
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 80.22
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-66  Score=615.17  Aligned_cols=518  Identities=26%  Similarity=0.359  Sum_probs=385.1

Q ss_pred             CCCceEEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCCC----------CCChhHHHHHHHHHhhcC
Q 002945            7 AGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLCI   76 (863)
Q Consensus         7 ~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~----------~~ep~a~eAre~Lr~lli   76 (863)
                      +....+.|+|++|+|||||+|+...    |  ++++|||+||||||+.++++          .++|||++||||||++|+
T Consensus        20 ~~~~~~~~~V~~V~DGDTi~v~~~~----g--~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~   93 (570)
T 3bdl_A           20 HMDKQFVAKVMQVLNADAIVVKLNS----G--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLI   93 (570)
T ss_dssp             -CCSEEEEEEEEEETTTEEEEECTT----S--CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHT
T ss_pred             cCCcEEEEEEEEEccCCEEEEECCC----C--CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhC
Confidence            3567789999999999999998642    3  57899999999999965432          479999999999999999


Q ss_pred             CCeEEEEEce---------eccCCC-cEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCC
Q 002945           77 GKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL  146 (863)
Q Consensus        77 Gk~V~~~~~~---------~~~~~g-R~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~  146 (863)
                      ||+|+|.+++         ..|+|| |.+|+||++|.|||++||++|||++++++....+++.+|++|.+||++||++++
T Consensus        94 gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~  173 (570)
T 3bdl_A           94 GKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGK  173 (570)
T ss_dssp             TCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEEeeccccccccccCCCCceEEEEEccCCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCC
Confidence            9999999998         358899 999999999999999999999999997532112356778999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCcCCCCchhhHHHHhhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCC
Q 002945          147 GRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA  225 (863)
Q Consensus       147 GiWs~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~  225 (863)
                      |||+.++.+.. .++++.++      ..++++|++. ++++++.|+|++|+|||||+|+++++++.++|||+||||||+.
T Consensus       174 GlW~~~~~~~~-~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~  246 (570)
T 3bdl_A          174 GLHSKKEVPIH-RVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA  246 (570)
T ss_dssp             GGGCCSCCCCC-CCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCC
T ss_pred             CCCCCCCCCcc-eeeecCCc------hHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCC
Confidence            99998654322 34666543      4688999995 5799999999999999999999988899999999999999986


Q ss_pred             CCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEE
Q 002945          226 RRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLI  305 (863)
Q Consensus       226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~g~eAk~f~~~~ll~r~V~v~~~~~Dkygr~l  305 (863)
                      +..           .|                         ...+.+|||.||++|++++|++|+|+|++.+.|+|||++
T Consensus       247 ~~~-----------~~-------------------------~~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~l  290 (570)
T 3bdl_A          247 RNL-----------PG-------------------------LVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFI  290 (570)
T ss_dssp             EEE-----------TT-------------------------EEECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCEE
T ss_pred             CCC-----------CC-------------------------CccccChHHHHHHHHHHHHhcCCeEEEEEEeEcCCCCEE
Confidence            521           00                         012478999999999999999999999999999999999


Q ss_pred             EEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHHHHHhcCccCcCCCCCCCCc-------cccccc
Q 002945          306 GSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNS-------KAIHDQ  378 (863)
Q Consensus       306 a~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiW~~~~~~~~~~-------~~~~~~  378 (863)
                      |+||++ |.   ||+++||++|||+++ ++......  ...|++||++||++++|||+++.|+....       ......
T Consensus       291 a~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~~--~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~  363 (570)
T 3bdl_A          291 GWLHID-GA---NLSVLLVEHALSKVH-FTAERSSY--YKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSAS  363 (570)
T ss_dssp             EEEEET-TE---EHHHHHHHTTSSEEC-GGGTTSTT--HHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCC
T ss_pred             EEEEEC-CE---EHHHHHHHcCCcEEE-ecCCCcch--HHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCCc
Confidence            999996 44   499999999999998 33322222  25899999999999999999988752110       112245


Q ss_pred             ceeeEEEEEeeCcEEEEEcCCCCCCCCccceEEEeeeccCCCCCCCCCCCccchhhHHhHHHHHhhccCcEEEEEEeeee
Q 002945          379 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSR  458 (863)
Q Consensus       379 ~~~g~V~~V~sgd~i~I~~~~~~~~~~~~e~~v~Lssi~~P~~~~~~~~~~~e~~~~earEflR~~~iGk~V~v~vdy~~  458 (863)
                      .+...|+.|.+...++|+..+..      .                    .-+-..-+-.+++..               
T Consensus       364 ~~~V~Vt~V~sp~~Fyvq~~~~~------~--------------------~l~~l~~~l~~~~~~---------------  402 (570)
T 3bdl_A          364 YKPVFVTEITDDLHFYVQDVETG------T--------------------QLEKLMENMRNDIAS---------------  402 (570)
T ss_dssp             CEEEEEEEECTTSEEEEEEGGGH------H--------------------HHHHHHHHHHHHHHH---------------
T ss_pred             EEEEEEEEEECCCeEEEEECCcH------H--------------------HHHHHHHHHHHHHhc---------------
Confidence            57888999999998988873310      0                    000111111222211               


Q ss_pred             cccccccccccCCCCCCCCCCCCCcccccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCC
Q 002945          459 KVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAG  538 (863)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  538 (863)
                      ..+            .   .+                               .+.                     ...|
T Consensus       403 ~~~------------l---~~-------------------------------~~~---------------------~~~G  415 (570)
T 3bdl_A          403 HPP------------V---EG-------------------------------SYA---------------------PRRG  415 (570)
T ss_dssp             SCC------------C---TT-------------------------------CCC---------------------CCTT
T ss_pred             CCC------------C---CC-------------------------------CcC---------------------CCcC
Confidence            000            0   00                               000                     0012


Q ss_pred             cchhHHHHhcccceeeecCCcccccHHHHHHHHHHHHHHhcCCCcCCCCCCCceEEEeCCCCccccccccccccccCCcc
Q 002945          539 VNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI  618 (863)
Q Consensus       539 ~nvae~lv~~G~a~v~~~r~~~~~s~~YraLv~ae~~A~~~~~Gi~s~k~~~~~~~~D~~~gn~~~ak~~l~~~~r~~~l  618 (863)
                      .-++.           +   ++ |+.|||+.|..          +.+.... .+.|+||  ||.+.    ++.. .+++|
T Consensus       416 ~~c~a-----------~---~~-d~~wyRa~I~~----------v~~~~~~-~V~fvDy--Gn~e~----v~~~-~Lr~l  462 (570)
T 3bdl_A          416 EFCIA-----------K---FV-DGEWYRARVEK----------VESPAKI-HVFYIDY--GNREV----LPST-RLGTL  462 (570)
T ss_dssp             CEEEE-----------E---CT-TSCEEEEEEEE----------EEETTEE-EEEETTT--CCEEE----ECGG-GEECC
T ss_pred             CEEEE-----------E---EC-CCCEEEEEEEE----------EcCCCeE-EEEEEeC--CCeEE----EEHH-HCccC
Confidence            22221           1   33 57899999884          2222222 3579999  89875    7766 88888


Q ss_pred             ceEEEEEecCCEEEE-EecCCCceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC--
Q 002945          619 PAVVEYVLSGHRFKV-LIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES--  695 (863)
Q Consensus       619 ~~~Ve~V~dG~~~~v-~lp~~~~~i~~~LaGI~~P~~~e~~~~EA~~~l~~~ll~r~V~v~v~~~D~~G~~~g~l~~~--  695 (863)
                      +.         .|.. .+|.+  ++.|+|+||.+|. +..|..+|..+|++++.++.+.++|...+ .|.+++.|+..  
T Consensus       463 ~~---------~f~~l~lP~q--A~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~~~~-~~~~~V~L~~~~~  529 (570)
T 3bdl_A          463 SP---------AFSTRVLPAQ--ATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQFADS  529 (570)
T ss_dssp             CG---------GGSTTTSCCC--CEEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEEECC-SSSCEEEEEETTT
T ss_pred             CH---------HHhcCCCCcc--eEEEEECCeEcCC-CCCCcHHHHHHHHHHhCCCEEEEEEEEEe-CCcEEEEEEECCC
Confidence            85         2321 13887  8999999999876 77899999999999999999999999987 57889999984  


Q ss_pred             CccHHHHHHHcCCEEEeeecCCCC-CCChHHHHHHHHHHHh
Q 002945          696 RTNVAVILLEAGLAKLQTSFGSDR-IPDSHLLEQAEKSAKS  735 (863)
Q Consensus       696 ~~ni~~~Lv~~GlA~v~~~~~~~~-~~~~~~l~~aE~~Ak~  735 (863)
                      +.+||..||++|||...+.- ... ....+.|+++|+.||.
T Consensus       530 ~~sIn~~Lv~~G~A~~~~~~-~~~~~~~~~~l~~~q~~Ak~  569 (570)
T 3bdl_A          530 KGDVGLGLVKEGLVMVEVRK-EKQFQKVITEYLNAQESAKS  569 (570)
T ss_dssp             CCBHHHHHHHTTSSEECCCC-SGGGHHHHHHHHHHHHTC--
T ss_pred             CccHHHHHHHCCCeEcchhh-hhhHHHHHHHHHHHHHHHhc
Confidence            67899999999999985211 000 1123678888888875
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 863
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 6e-12
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 3e-10
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 2e-05
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.002
d2diqa197 b.34.9.1 (A:8-104) Tudor and KH domain-containing 5e-11
d2hqxa190 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( 2e-08
d2d9ta160 b.34.9.1 (A:8-67) Tudor domain-containing protein 2e-07
d1mhna_59 b.34.9.1 (A:) Survival motor neuron protein 1, smn 7e-05
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 61.8 bits (149), Expect = 6e-12
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 13/142 (9%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFL 71
             A +     GD++ +           +  T  L  + TP         E +  ++  F 
Sbjct: 5   EPATLIKAIDGDTVKLM-------YKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFT 57

Query: 72  RKLCIGKEVTFRVDYAVPNIGREFG---TVILGDKNVAMLVVSEGWAKVKEQGSQKGEAS 128
           +K+    +             +       +    K V   +V +G AKV          +
Sbjct: 58  KKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPN---N 114

Query: 129 PFLAELLRLEEQAKLQGLGRWS 150
                L + E QAK + L  WS
Sbjct: 115 THEQLLRKSEAQAKKEKLNIWS 136
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query863
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.94
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.9
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 98.79
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 98.14
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 97.66
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 97.44
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 90.74
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 83.14
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=9.3e-27  Score=222.18  Aligned_cols=129  Identities=22%  Similarity=0.237  Sum_probs=114.1

Q ss_pred             EEEEEeEecCCCEEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcC-CCeEEEEEcee--c
Q 002945           12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRVDYA--V   88 (863)
Q Consensus        12 ~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~~~ep~a~eAre~Lr~lli-Gk~V~~~~~~~--~   88 (863)
                      ..++|++|+|||||.|...+       .+.+|||+||||||+.++....+|||++|++||+++|. |+.|.+.++..  .
T Consensus         5 ~~a~V~~V~DGDT~~v~~~~-------~~~~vRL~GIdaPE~~~~~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~~   77 (136)
T d1snoa_           5 EPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRT   77 (136)
T ss_dssp             EEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCSSBTTTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCSB
T ss_pred             cceEEEEEEcCCEEEEEeCC-------cEEEEEEEEEcccccccCCcchhhhHHHHHHHHHHHhhcCceeEEEEeccccC
Confidence            47899999999999999762       46799999999999998777789999999999999996 79999987643  5


Q ss_pred             cCCCcEEEEEEeCCccHHHHHHHcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHcCCCCcC
Q 002945           89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS  150 (863)
Q Consensus        89 ~~~gR~~g~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~~~GiWs  150 (863)
                      |+|||.+|+||++|.|||++||++|||+++..+.   ....+.+.|..||++|+++++||||
T Consensus        78 D~~gR~la~v~~~g~~l~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~~~GlWs  136 (136)
T d1snoa_          78 DKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---PNNTHEQLLRKSEAQAKKEKLNIWS  136 (136)
T ss_dssp             CTTSCEEEEEEETTEEHHHHHHHTTSCEECCCBT---TBCTTHHHHHHHHHHHHHTTCGGGC
T ss_pred             CccccceeEEEEecchhHHHHHHCCCEEEeeecC---CChhHHHHHHHHHHHHHHcCCCCCC
Confidence            7899999999999999999999999999987664   2345678899999999999999997
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure