Citrus Sinensis ID: 002964

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860--
MTDFQQLQQKPESADDACVDFECGLEELMRGHLDDCMSFASCSSTRNPEDDDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRESQSPTSRRQGAVERPSTQASAILQMWRELEDEHVLNRARERVRERLRQRRSVESNTNVSTTNMSESRGSENQGSLEDASESENEYGTWSHDQMESQNEHGDNNGSSREQSPDLGDVERERVRQIVRGWMESGLSDHSSNATQRNGSPRAEWLGETERERVRIVREWVQMTSQQRGARAGRREDQAAGLGAQGEQVREGSVADHDEGQPEHVRRDMRRLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNNERPVEEERPPSMAAGELLQLRQRHTVSGLREGFRSRLENIVRGQASSSSDSTSNNNISESRNERIQTSLSQDAQNETNEILQPRSEESEIHRLPDQASGLGSNTAVGIANQGGNWEEEISEDNRGNWQQQYSQFDESRNGDEAEMDTNWQESPVNDWPQETPGNVDREQHHPQEAQGVWRDDGSREAVQRWSEGPSGPARTRRAFPVRRFSRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPTSPERDQEQQRDEQNEDQHDADNRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSEIEWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL
ccHHHHHccccccccHHHHHHHHcHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccHHHcccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccEEEEcccccccHHHHHHHHHccccccccccHHHHHHHHHcccc
ccccHHHHccccccccHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEcccccccccccHHHccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHcccccccHHccccHHHHHHHHHHHHHHHcccccccccccHHcccccccccHHcccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccHHHHcccccccccHHHHHHHccHccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccEEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHc
mtdfqqlqqkpesaddaCVDFECGLEELMRghlddcmsfascsstrnpeddddegdQLVRRRRrsdlegddlaeSSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTvsmldssflresqsptsrrqgaverpstQASAILQMWRELEDEHVLNRARERVRERLRQRrsvesntnvsttnmsesrgsenqgsledaseseneygtwshdqmesqnehgdnngssreqspdlgdvERERVRQIVRGWMesglsdhssnatqrngspraewlgetERERVRIVREWVQMTSQqrgaragrredqaaglgaqgeqvregsvadhdegqpehVRRDMRRLRGRQAILDLLVRIERERQRELQGLLehravsdfaHRNRIQSLLRGrflrnnerpveeerppsmaaGELLQLRQRHTVSGLREGFRSRLENIvrgqassssdstsnnnisesRNERIQTSLsqdaqnetneilqprseeseihrlpdqasglgsntAVGIanqggnweeeisednrgnwqQQYSQfdesrngdeaemdtnwqespvndwpqetpgnvdreqhhpqeaqgvwrddgsreavqrwsegpsgpartrrafpvrrfsrfhppdddnvySMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERqgrapidwdlhrnlptptptsperdqeqqrdeqnedqhdadnrpslvlpsppvpppqplwhqdlhhtswsrhsmhrSEIEWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMtsedgskwahvrkgtccvccdshidsllyrcghmctcskcanelvrgggkcplcrapIVEVIRAYSIL
mtdfqqlqqkpesaddaCVDFECGLEELMRGHLDDCMSFAscsstrnpeddddegdqlvrrrrrsdlegddlaessaarrrhsriLSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRESQsptsrrqgaverpstQASAILQMWRELEDEHVLNRARERvrerlrqrrsvesntnvsttnmsesrgsenqgSLEDASESENEYGTWSHDQMESQNehgdnngssreqspdlgdveRERVRQIVRGwmesglsdhssnatqrngspraewlgeterERVRIVREWvqmtsqqrgaragrredQAAGLGaqgeqvregsvadhdegqpehvrrdmrrlrGRQAILDLLVRIERERQRELQGllehravsdfahrnriqsllrgrflrnnerpveeerppsmaagellqLRQRHTVSGLREGFRSRLENivrgqassssdstsnnnisesRNERIQtslsqdaqneTNEILQPRSEESEIHRLpdqasglgsNTAVGIANQGGNWEEEISEDNRGNWQQQYSQFDESRNGDEAEMDTNWQESPVNDWPQETPGNVDREQHHPQeaqgvwrddgSREAVqrwsegpsgpartrrafpvrrfsrfhppdddnvySMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQgrapidwdlhrnlptptptsperdqEQQRDEQNEDQHDADNRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSEIEWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGggkcplcrapivEVIRAYSIL
MTDFQQLQQKPESADDACVDFECGLEELMRGHLDDCMSFASCSSTRNPEDDDDEGDQLVRRRRRSDLEGDDLaessaarrrhsrilsrwaARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRESQSPTSRRQGAVERPSTQASAILQMWRELEDEHVLNrarervrerlrqrrSVESNTNVSTTNMSESRGSENQGSLEDASESENEYGTWSHDQMESQNEHGDNNGSSREQSPDLGDVERERVRQIVRGWMESGLSDHSSNATQRNGSPRAEWLGeterervrivrewvQMTSQQRGARAGRREDQAAGLGAQGEQVREGSVADHDEGQPEHVRRDMRRLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLrnnerpveeerppSMAAGELLQLRQRHTVSGLREGFRSRLENIVRGQAssssdstsnnnisesrneriQTSLSQDAQNETNEILQPRSEESEIHRLPDQASGLGSNTAVGIANQGGNWEEEISEDNRGNWQQQYSQFDESRNGDEAEMDTNWQESPVNDWPQETPGNVDREQHHPQEAQGVWRDDGSREAVQRWSEGPSGPARTRRAFPVRRFSRFHPPDDDNVYSMElrellsrrsvsnllrsGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPTSPerdqeqqrdeqnedqhdADNRpslvlpsppvpppqplWHQDLHHTSWSRHSMHRSEIEWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL
****************ACVDFECGLEELMRGHLDDCMSF*************************************************************************LAGLH*************************************W*************************************************************************************************************************************VRIVREWV*****************************************************RQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRF*************************************************************************************************************************************************************************************************************************************************LLRSGFRESLDQLIQSYVERQGRAPIDWDL*******************************************************************EIEWEMINDLRADMA*****************************************************KWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS**
**********************CGLEELMRGHLDD****************************************************RWAARQAQEMI************************************************************************************************************************************************************************************************************************************************************QAILDL*******************AVSDFAHRNRIQSLLRGR*****************************************************************************************************************************************************************************************************************************************L**************************************************************************************************************************************************************************************CCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL
***************DACVDFECGLEELMRGHLDDCMSFAS**************DQLVRRRRR*******************RILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDS***********************ASAILQMWRELEDEHVLNRARERVRER**********************************************************************VERERVRQIVRGWMESG****************AEWLGETERERVRIVREWVQM*****************************************VRRDMRRLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNNE********PSMAAGELLQLRQRHTVSGLREGFRSRLENIV***********************************TNEILQPRSEESEIHRLPDQASGLGSNTAVGIANQGGNWEEEISEDNRGNWQQQYSQFDESRNGDEAEMDTNWQESPVNDWPQETPGN************************************TRRAFPVRRFSRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTP************************NRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSEIEWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL
*************ADDACVDFECGLEELMRGHLDDCMSFASC****************************************SRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDS******************************WRELEDEHVLN************************************************************************************************************************RERVRIVREWVQMT*******************************************DMRRLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNNE**************************************************************************************************************************************************************************************************SGPARTRRAFPVRRFSRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLH*************************************PSPPVPPPQ********HTSWSRHSMHRSEIEWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEV***L***********************RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTDFQQLQQKPESADDACVDFECGLEELMRGHLDDCMSFASCSSTRNPEDDDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRESQSPTSRRQGAVERPSTQASAILQMWRELEDEHVxxxxxxxxxxxxxxxxxxxxxTNVSTTNMSESRGSENQGSLEDASESENEYGTWSHDQMESQNEHGDNNGSSREQSPDLGDVERERVRQIVRGWMESGLSDHSSNATQRNGSPRAEWLGETERERVRIVREWVQMTSQQRGARAGRREDQAAGLGAQGEQVREGSVADHDEGQPEHVRRDMRRLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNNERPVEEERPPSMAAGELLQLRQRHTVSGLREGFRSRLENIVRGQASSSSDSTSNNNISESRNERIQTSLSQDAQNETNEILQPRSEESEIHRLPDQASGLGSNTAVGIANQGGNWEEEISEDNRGNWQQQYSQFDESRNGDEAEMDTNWQESPVNDWPQETPGNVDREQHHPQEAQGVWRDDGSREAVQRWSEGPSGPARTRRAFPVRRFSRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPTSPERDQEQQRDEQNEDQHDADNRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSEIEWEMINDLRADMARLHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query862 2.2.26 [Sep-21-2011]
P29503754 Protein neuralized OS=Dro yes no 0.059 0.067 0.584 1e-11
Q24746747 Protein neuralized OS=Dro N/A no 0.059 0.068 0.584 2e-11
A8MQ27555 E3 ubiquitin-protein liga yes no 0.066 0.102 0.448 6e-09
Q0MW30546 E3 ubiquitin-protein liga yes no 0.062 0.098 0.490 8e-09
Q7XI08513 Probable E3 ubiquitin-pro no no 0.074 0.124 0.328 2e-06
O76050574 Neuralized-like protein 1 no no 0.058 0.087 0.392 2e-06
Q923S6574 Neuralized-like protein 1 no no 0.058 0.087 0.392 3e-06
Q4FE47462 Putative E3 ubiquitin-pro no no 0.062 0.116 0.370 3e-05
Q84ME1378 Probable E3 ubiquitin-pro no no 0.055 0.126 0.416 3e-05
Q557E7665 E3 ubiquitin-protein liga no no 0.056 0.073 0.396 3e-05
>sp|P29503|NEUR_DROME Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2 Back     alignment and function desciption
 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)

Query: 810 CCVCCDSHIDSLLYRCGHMCTCSKCANELVR--GGGKCPLCRAPIVEVIRAYS 860
           C +C ++ IDS+LY CGHMC C  CA E  R  GGG+CPLCRA I +VIR Y+
Sbjct: 701 CTICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRDVIRTYT 753
Involved in neurogenesis. Interacts with other neurogenic proteins in the specification of the neuroblast versus epidermoblast cell fate.
Drosophila melanogaster (taxid: 7227)
>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1 Back     alignment and function description
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1 SV=1 Back     alignment and function description
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1 SV=1 Back     alignment and function description
>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1 Back     alignment and function description
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1 Back     alignment and function description
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1 Back     alignment and function description
>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1 Back     alignment and function description
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1 Back     alignment and function description
>sp|Q557E7|CBLA_DICDI E3 ubiquitin-protein ligase cblA OS=Dictyostelium discoideum GN=cblA-1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query862
255586963831 conserved hypothetical protein [Ricinus 0.953 0.989 0.825 0.0
356576355844 PREDICTED: uncharacterized protein LOC10 0.973 0.994 0.771 0.0
225448888862 PREDICTED: uncharacterized protein LOC10 0.991 0.991 0.796 0.0
356535515849 PREDICTED: uncharacterized protein LOC10 0.979 0.994 0.765 0.0
147866421914 hypothetical protein VITISV_039521 [Viti 0.991 0.935 0.750 0.0
358348299851 Protein neuralized [Medicago truncatula] 0.980 0.992 0.75 0.0
449449387866 PREDICTED: uncharacterized protein LOC10 0.995 0.990 0.756 0.0
146336939 978 putative Glu-rich protein [Medicago trun 0.959 0.845 0.719 0.0
297806423860 protein binding protein [Arabidopsis lyr 0.973 0.975 0.667 0.0
30680527863 RING/U-box domain-containing protein [Ar 0.973 0.972 0.659 0.0
>gi|255586963|ref|XP_002534079.1| conserved hypothetical protein [Ricinus communis] gi|223525880|gb|EEF28302.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1280 bits (3312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 689/835 (82%), Positives = 742/835 (88%), Gaps = 13/835 (1%)

Query: 37  MSFASCSSTRNPEDDDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQE 96
           MSFASCSST N +D+DDEGDQLVRRRRR+DLEGDDLAESSAARRRHSRI SRWAARQAQE
Sbjct: 1   MSFASCSSTHNQDDEDDEGDQLVRRRRRADLEGDDLAESSAARRRHSRIFSRWAARQAQE 60

Query: 97  MITTIERRNRESELMALAGLHTVSMLDSSFLRESQSPTSRRQGAVERPSTQASAILQMWR 156
           MITTIERRNRESELMALAGLHTVSMLDSSFLRES SPTSRRQGAVERPST+AS+ILQMWR
Sbjct: 61  MITTIERRNRESELMALAGLHTVSMLDSSFLRESHSPTSRRQGAVERPSTRASSILQMWR 120

Query: 157 ELEDEHVLNRARERVRERLRQRRSVESNTNVSTTNMSESRGSENQGSLEDASESENEYGT 216
           ELEDE +LNRARERVRERLR +RSVESNTN+S+TNMSESRGSE QGSL DASESENE+G 
Sbjct: 121 ELEDEQLLNRARERVRERLRHQRSVESNTNISSTNMSESRGSEIQGSLGDASESENEFGP 180

Query: 217 WSHDQMESQNEHGDNNGSSREQSPDLGDVERERVRQIVRGWMESGLSDHSSNATQRNGSP 276
           W H+++ SQNE GDNNGSSREQSPDLG+VERERVRQIVRGWMESG+SDH+SN +QRNGSP
Sbjct: 181 WPHERLGSQNERGDNNGSSREQSPDLGEVERERVRQIVRGWMESGISDHTSNVSQRNGSP 240

Query: 277 RAEWLGETERERVRIVREWVQMTSQQRGARAGRREDQAAGLGAQGEQ-VREGSVADHDEG 335
           R EWLGETERERVRIVREWVQM SQQRG R GRREDQAAG  AQ ++ VR+GSVADHDEG
Sbjct: 241 RGEWLGETERERVRIVREWVQMASQQRGGRGGRREDQAAGPDAQADRVVRDGSVADHDEG 300

Query: 336 QPEHVRRDMRRLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFL 395
           QPEH+RRDM RLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFL
Sbjct: 301 QPEHIRRDMLRLRGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFL 360

Query: 396 RNNERPVEEERPPSMAAGELLQLRQRHTVSGLREGFRSRLENIVRGQASSSSDSTSNNNI 455
           R NERPVEEERPPSMAA EL+QLRQRHTVSGLREGFRSRLE IVRGQAS  SDST +NN+
Sbjct: 361 R-NERPVEEERPPSMAASELVQLRQRHTVSGLREGFRSRLETIVRGQASGQSDSTPDNNV 419

Query: 456 SESRNERIQTSLSQDAQNETNEILQPRSEESEIHRLPDQASGLGSNTAVG------IANQ 509
           ++  N+  Q S S++ Q+E NE  QPRS+E +IHRL DQ   + +NT V         NQ
Sbjct: 420 NDG-NDWSQISTSENVQHENNE--QPRSQEIDIHRLSDQTDSIENNTTVNHMNWQENGNQ 476

Query: 510 GGNWEEEISEDNRGNWQQQ-YSQFDESRNGDEAEMDTNWQESPVNDWPQETPGNVDREQH 568
           G  W+ +I+ D   NWQQQ YSQF+E RNGD   MD NWQE+  N WPQE  GNV  EQ 
Sbjct: 477 GEGWQGQITNDEEQNWQQQNYSQFNEWRNGDAEPMDGNWQENSANHWPQEAAGNVHSEQR 536

Query: 569 HPQEAQGVWRDDGSREAVQRWSEGPSGPARTRRAFPVRRFSRFHPPDDDNVYSMELRELL 628
             QEAQ VWR++ S+ AV+ W+EGPS P RTRRA PVRR +RFHPPDDDNVYSMELRELL
Sbjct: 537 RLQEAQEVWRENPSQGAVENWTEGPSDPPRTRRAVPVRRINRFHPPDDDNVYSMELRELL 596

Query: 629 SRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPTSPERDQEQQRDEQ 688
           SRRSVSNLLRSGFRESLD LIQSYVERQGRAPIDWD+HRNLPTPTPTSPERD++QQRD+Q
Sbjct: 597 SRRSVSNLLRSGFRESLDHLIQSYVERQGRAPIDWDMHRNLPTPTPTSPERDEDQQRDDQ 656

Query: 689 NEDQHDADNRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSEIEWEMINDLRADMAR 748
           NEDQ D+ NRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSE+EWEMINDLRADMAR
Sbjct: 657 NEDQRDSMNRPSLVLPSPPVPPPQPLWHQDLHHTSWSRHSMHRSELEWEMINDLRADMAR 716

Query: 749 LHQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEQGMV-AMTSEDGSKWAHVRK 807
           L QGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRS GE+G+V A TSEDGSKW HVRK
Sbjct: 717 LQQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSPGEKGLVGAETSEDGSKWGHVRK 776

Query: 808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL 862
           GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL
Sbjct: 777 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL 831

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356576355|ref|XP_003556298.1| PREDICTED: uncharacterized protein LOC100805607 [Glycine max] Back     alignment and taxonomy information
>gi|225448888|ref|XP_002263930.1| PREDICTED: uncharacterized protein LOC100241098 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535515|ref|XP_003536290.1| PREDICTED: uncharacterized protein LOC100784174 [Glycine max] Back     alignment and taxonomy information
>gi|147866421|emb|CAN81976.1| hypothetical protein VITISV_039521 [Vitis vinifera] Back     alignment and taxonomy information
>gi|358348299|ref|XP_003638185.1| Protein neuralized [Medicago truncatula] gi|355504120|gb|AES85323.1| Protein neuralized [Medicago truncatula] Back     alignment and taxonomy information
>gi|449449387|ref|XP_004142446.1| PREDICTED: uncharacterized protein LOC101211903 [Cucumis sativus] gi|449524776|ref|XP_004169397.1| PREDICTED: uncharacterized protein LOC101224364 [Cucumis sativus] Back     alignment and taxonomy information
>gi|146336939|gb|ABQ23583.1| putative Glu-rich protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297806423|ref|XP_002871095.1| protein binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316932|gb|EFH47354.1| protein binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680527|ref|NP_196066.2| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|334187422|ref|NP_001190224.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|332003363|gb|AED90746.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|332003364|gb|AED90747.1| RING/U-box domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query862
TAIR|locus:2184407863 AT5G04460 [Arabidopsis thalian 0.981 0.980 0.575 1.3e-244
TAIR|locus:2044752652 EDA18 "embryo sac development 0.098 0.130 0.457 2.1e-24
TAIR|locus:2196954730 AT1G30860 [Arabidopsis thalian 0.156 0.184 0.352 2.2e-23
TAIR|locus:2120377 1188 AT4G20160 [Arabidopsis thalian 0.111 0.080 0.377 2.6e-13
UNIPROTKB|Q24746747 neur "Protein neuralized" [Dro 0.059 0.068 0.584 7.1e-09
FB|FBgn0002932754 neur "neuralized" [Drosophila 0.059 0.067 0.584 7.2e-09
ZFIN|ZDB-GENE-060929-1210498 neurlb "neuralized homolog b ( 0.120 0.208 0.305 1.3e-08
MGI|MGI:3643092546 Neurl1b "neuralized homolog 1b 0.062 0.098 0.490 5.1e-08
RGD|1564984546 Neurl1B "neuralized homolog 1B 0.062 0.098 0.490 6.9e-08
WB|WBGene00017342617 F10D7.5 [Caenorhabditis elegan 0.071 0.100 0.428 1.5e-07
TAIR|locus:2184407 AT5G04460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2357 (834.8 bits), Expect = 1.3e-244, P = 1.3e-244
 Identities = 506/879 (57%), Positives = 580/879 (65%)

Query:     1 MTDFQQLQQKPESADDACVDFECGLEELMRGHLDDCMSFASCSSTRNPEDDDDEGDQLVR 60
             MT  Q L QK ES DD   +FE GLEE MRGHLD+C+SF SCSS  NPED+D+E DQLVR
Sbjct:     1 MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVR 60

Query:    61 RRRRSDLEGDDLXXXXXXXXXXXXXXXXXXARQAQEMITTIERRNRESELMALAGLHTVS 120
             RRRRS+LEGD+L                  ARQAQEMITTIERRNRESEL+ALAGL TVS
Sbjct:    61 RRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVS 120

Query:   121 MLDSSFLRESQS--PTSRRQGAV-ERPSTQASAILQMWRELEDEHVLNXXXXXXXXXXXX 177
             MLDSSFLRESQS  P+SRRQGA  ERP+TQAS ILQMWRELEDEHVLN            
Sbjct:   121 MLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQ 180

Query:   178 XXSVESNTNVSTTNMSESRGSENQGSLEDASESENEYGTWSHDQMESQNEHGDNNG-SSR 236
               SVESNTN+S++  SES+ SEN GSL D+SESEN++G+WSHD+    NEHGDNN  SSR
Sbjct:   181 QRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDR----NEHGDNNNTSSR 236

Query:   237 EQSPDLGDVERERVRQIVRGWMESGLSDHSSNATQRNGSPRAEWLGXXXXXXXXXXXXXX 296
             EQSPDLGD ERERVR I RGWM+S ++DHSSN  QR+ + R EWLG              
Sbjct:   237 EQSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWM 296

Query:   297 QMTSQQRG-ARAGRREDQAAGLGA--------QGEQVREGSVADHDEGQPEHVRRDMRRL 347
             QMTSQQRG ARA  REDQ +   A        Q ++VR G   +H+EGQP HVRRD+RR+
Sbjct:   297 QMTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRV 356

Query:   348 RGRQAILDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLXXXXXXXXXXXX 407
             RGRQA+LDLL+R ERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFL            
Sbjct:   357 RGRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTP 416

Query:   408 XSMAAGELLQLRQRHTVSGLREGFRSRLENIVRGQAXXXXXXXXXXXXXXXXXXXXQTSL 467
              SMA+ ELLQLR+R TVSGLREGF +  ENIV                          + 
Sbjct:   417 -SMASRELLQLRERQTVSGLREGFHNGRENIVHENTSNTDNDNSNTSTNALAIAITAGN- 474

Query:   468 SQDAQNETNEILQPRSEESEIHRLPDQASGLGSNTAVGI---ANQGGNWEEEISEDNRGN 524
             SQ   +E++   + +  +S I  LPD +    +N         NQ   W+E +  D R N
Sbjct:   475 SQRVTDESSTSSR-QGNDSPI--LPDNSESNLANADRDWEEDTNQRRIWQENVPVDERPN 531

Query:   525 WQQQ-YSQFDESRNGDEAEMDTNWQESPVNDWPQETPGNVDREQHHPQEAQGVWRDDGSR 583
              +Q   +QFD   N      D N  E+ V+D  +E  G  D +++  QEA GVW ++ SR
Sbjct:   532 LEQTTLTQFDGYDN-----TDINRDETSVSDMHREASGFAD-DEYRTQEAHGVWHENSSR 585

Query:   584 EAVQRWSEGPSGPARTRRAFPVRRFSRFHPPDDDNVYSMEXXXXXXXXXXXXXXXXGFRE 643
             ++   W    S   R+RR   +RR +RFHPP+DDNVYSME                GFRE
Sbjct:   586 QSDGNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRE 645

Query:   644 SLDQLIQSYVERQGRAPIDWDLHRNLPTPTPTSPXXXXXXXXXXXXXXXXXADNRXXXXX 703
             SLDQLIQSY ER+G   +DWDLH NL T  P SP                   N      
Sbjct:   646 SLDQLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGIN-GSQLL 704

Query:   704 XXXXXXXXXXXWHQDLHHTSWSRHSMHRSEIEWEMINDLRADMARLHQGMSHMQRMLEAC 763
                        WHQDLHHTSWSRHSMHRSEIEWE++NDLR D+ARL QGMS MQRMLEAC
Sbjct:   705 PTPPAPPPQPIWHQDLHHTSWSRHSMHRSEIEWEVMNDLRGDVARLQQGMSQMQRMLEAC 764

Query:   764 MDMQLELQRSVRQEVSAALNRSAGEQGMVAMTSEDGSKWAHVRKGTCCVCCDSHIDSLLY 823
             MDMQLELQRSVRQEVSAALNRSAG+QGM A TSEDGS+W+HV KGTCCVCCD+HID+LLY
Sbjct:   765 MDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLY 824

Query:   824 RCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL 862
             RCGHMCTCSKCANELVR GGKCPLCRAPI+EVIRAYSIL
Sbjct:   825 RCGHMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSIL 863
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2044752 EDA18 "embryo sac development arrest 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196954 AT1G30860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120377 AT4G20160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q24746 neur "Protein neuralized" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
FB|FBgn0002932 neur "neuralized" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-1210 neurlb "neuralized homolog b (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:3643092 Neurl1b "neuralized homolog 1b (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1564984 Neurl1B "neuralized homolog 1B (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00017342 F10D7.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query862
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 2e-16
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 9e-11
cd0016245 cd00162, RING, RING-finger (Really Interesting New 8e-08
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 5e-07
TIGR00844810 TIGR00844, c_cpa1, na(+)/h(+) antiporter 0.003
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information 
 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 806 RKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEV 855
               C +C +   + +   CGH+C C +CA  L R   KCP+CR PI  V
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRL-RSKKKCPICRQPIESV 49

Length = 49
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 862
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 99.35
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 99.13
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 99.05
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 98.98
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 98.82
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 98.41
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.37
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.36
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 98.32
PHA02929238 N1R/p28-like protein; Provisional 98.3
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.26
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.2
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 98.13
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 98.01
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.97
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.96
PHA02926242 zinc finger-like protein; Provisional 97.93
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.92
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.89
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.89
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.87
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.86
PF1463444 zf-RING_5: zinc-RING finger domain 97.81
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 97.78
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 97.74
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.68
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 97.67
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.52
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.46
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.4
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 97.38
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.38
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 97.37
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 97.31
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.16
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 97.0
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 96.89
COG5236 493 Uncharacterized conserved protein, contains RING Z 96.89
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 96.52
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.49
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 96.43
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 96.07
COG5152259 Uncharacterized conserved protein, contains RING a 95.59
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 95.5
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.48
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 95.43
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 95.32
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 95.11
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 95.03
KOG0825 1134 consensus PHD Zn-finger protein [General function 94.76
KOG2660 331 consensus Locus-specific chromosome binding protei 94.5
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 93.57
KOG1001 674 consensus Helicase-like transcription factor HLTF/ 93.47
KOG3039303 consensus Uncharacterized conserved protein [Funct 93.42
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 93.35
KOG2932 389 consensus E3 ubiquitin ligase involved in ubiquiti 93.21
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 92.87
PF04641260 Rtf2: Rtf2 RING-finger 92.84
KOG0297 391 consensus TNF receptor-associated factor [Signal t 92.53
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 92.38
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 92.37
KOG1002 791 consensus Nucleotide excision repair protein RAD16 90.45
KOG3842429 consensus Adaptor protein Pellino [Signal transduc 90.21
KOG3002 299 consensus Zn finger protein [General function pred 90.03
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 89.72
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 88.54
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 88.36
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 87.92
KOG2113394 consensus Predicted RNA binding protein, contains 87.71
COG52191525 Uncharacterized conserved protein, contains RING Z 87.31
COG5220 314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 87.22
PF0385450 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc 87.0
PF04710416 Pellino: Pellino; InterPro: IPR006800 Pellino is i 85.69
COG5222427 Uncharacterized conserved protein, contains RING Z 85.22
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 84.88
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 84.86
KOG3799169 consensus Rab3 effector RIM1 and related proteins, 84.67
KOG2113 394 consensus Predicted RNA binding protein, contains 84.51
COG5175 480 MOT2 Transcriptional repressor [Transcription] 83.6
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 81.6
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 81.03
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.35  E-value=6.4e-14  Score=116.36  Aligned_cols=53  Identities=47%  Similarity=1.144  Sum_probs=50.0

Q ss_pred             cccccccccccCeEEeCCCCccccHHhHHHHhc-CCCCCccccccccceeeeee
Q 002964          808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIVEVIRAYS  860 (862)
Q Consensus       808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~vIriy~  860 (862)
                      .+|.||++.+.+.+++-|||||+|+.|+..++. ..+.||+||++|..+|+.|.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~   61 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR   61 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence            689999999999999999999999999999987 56789999999999999985

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query862
3t6p_A345 Iap Antagonist-Induced Conformational Change In Cia 2e-04
3eb5_A74 Structure Of The Ciap2 Ring Domain Length = 74 2e-04
2yhn_A79 The Idol-Ube2d Complex Mediates Sterol-Dependent De 3e-04
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
           TC VC D  +  +   CGH+  C +CA  L     KCP+CR  I   +R +
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 343
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74 Back     alignment and structure
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query862
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 6e-21
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 2e-20
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 8e-20
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 5e-18
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 1e-17
2ea5_A68 Cell growth regulator with ring finger domain prot 1e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 2e-06
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 4e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 4e-06
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 1e-05
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 4e-05
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 5e-05
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 5e-05
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 1e-04
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 1e-04
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 1e-04
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 2e-04
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 3e-04
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 4e-04
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 4e-04
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 5e-04
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 7e-04
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
 Score = 86.0 bits (213), Expect = 6e-21
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 807 KGTCCVCCDSHIDS--LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAY 859
              C +C     D   +  R GH+ TC  CA  L + G  CP+C+  I  VI+ +
Sbjct: 7   LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query862
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 99.28
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 99.27
2ea5_A68 Cell growth regulator with ring finger domain prot 99.23
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 99.07
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 99.04
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 99.04
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 98.96
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 98.84
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.77
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.73
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.71
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.71
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.7
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.68
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.66
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.66
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.63
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.63
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.62
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 98.62
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.6
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.59
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.55
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 98.52
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.52
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 98.52
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.52
2ect_A78 Ring finger protein 126; metal binding protein, st 98.52
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.5
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.49
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.49
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.49
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 98.47
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.47
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.47
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 98.46
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.45
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.44
1z6u_A150 NP95-like ring finger protein isoform B; structura 98.42
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.42
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.4
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.39
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 98.39
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.39
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 98.36
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 98.33
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.31
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.31
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 98.27
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.26
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.25
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.24
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.23
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 98.2
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.2
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.11
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 98.09
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 98.08
2f42_A179 STIP1 homology and U-box containing protein 1; cha 98.03
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 97.97
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.88
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.85
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 97.62
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 97.51
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 97.27
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 97.26
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 97.19
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 97.13
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 95.53
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 95.12
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 94.99
2ko5_A99 Ring finger protein Z; lassa fever virus-Z, negati 94.69
3nw0_A238 Non-structural maintenance of chromosomes element 86.59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
Probab=99.28  E-value=1.5e-12  Score=108.65  Aligned_cols=55  Identities=33%  Similarity=0.756  Sum_probs=50.8

Q ss_pred             cccccccccccccCeEEe--CCCCccccHHhHHHHhcCCCCCccccccccceeeeee
Q 002964          806 RKGTCCVCCDSHIDSLLY--RCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYS  860 (862)
Q Consensus       806 ~~~~C~ICld~~~d~vll--PCGH~c~C~~Ca~~L~~~~~~CPiCRa~I~~vIriy~  860 (862)
                      ....|+||++.+.+++++  ||||+++|..|+..+....++||+||++|..++++|.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            346899999999998887  9999999999999999888899999999999999995
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 862
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 8e-08
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 4e-07
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 7e-07
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 1e-06
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 3e-05
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 4e-05
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 0.002
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 8e-08
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 809 TCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPI 852
            C +C ++  D  +  CGH+   S   +     G  CP CR  I
Sbjct: 25  LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query862
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.78
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.71
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.5
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.5
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.42
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.37
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.35
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.34
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.28
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.28
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.25
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.18
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.15
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.07
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.06
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.56
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.6
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.4e-09  Score=92.95  Aligned_cols=51  Identities=27%  Similarity=0.718  Sum_probs=44.5

Q ss_pred             cccccccccccCeEEeCCCCccccHHhHHHHhc-CCCCCccccccccceeeee
Q 002964          808 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELVR-GGGKCPLCRAPIVEVIRAY  859 (862)
Q Consensus       808 ~~C~ICld~~~d~vllPCGH~c~C~~Ca~~L~~-~~~~CPiCRa~I~~vIriy  859 (862)
                      ..|.||++...+.+++||||. ||..|+..|.. ...+||+||..|.....++
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~   75 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV   75 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCSS
T ss_pred             CCCccCCCcCCCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCceee
Confidence            479999999999999999998 99999999875 4568999999998765543
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure