Citrus Sinensis ID: 002985
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 861 | 2.2.26 [Sep-21-2011] | |||||||
| O52177 | 757 | GTP pyrophosphokinase OS= | yes | no | 0.523 | 0.595 | 0.384 | 1e-95 | |
| O54408 | 734 | GTP pyrophosphokinase OS= | yes | no | 0.514 | 0.603 | 0.373 | 9e-88 | |
| P0A0E9 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.523 | 0.612 | 0.361 | 6e-84 | |
| P0A0F0 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.523 | 0.612 | 0.361 | 6e-84 | |
| Q6G8T5 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.523 | 0.612 | 0.361 | 6e-84 | |
| Q99TL8 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.523 | 0.612 | 0.361 | 6e-84 | |
| Q6GG70 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.523 | 0.612 | 0.361 | 6e-84 | |
| Q931Q4 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.523 | 0.612 | 0.361 | 7e-84 | |
| Q54089 | 739 | Bifunctional (p)ppGpp syn | N/A | no | 0.513 | 0.598 | 0.348 | 5e-82 | |
| Q8CS97 | 729 | GTP pyrophosphokinase OS= | yes | no | 0.493 | 0.582 | 0.363 | 1e-80 |
| >sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 | Back alignment and function desciption |
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Score = 351 bits (901), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/541 (38%), Positives = 310/541 (57%), Gaps = 90/541 (16%)
Query: 124 EDSPERLWEDLRPTISYLSPN-ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL 182
+DSPER PT+S P+ +L+++++A + + + H GQ R+SGEP+++HP+EVA IL
Sbjct: 19 DDSPERH----PPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGIL 74
Query: 183 GELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNEN 242
GEL+LD SI GLLHDT+EDT + T E + E FG+ V +V+G TK+SK + +
Sbjct: 75 GELKLDEASIVTGLLHDTIEDT-LATEEELTELFGSEVAHLVDGVTKLSKF----SASAS 129
Query: 243 HSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ------------- 289
S ++ +A++ R+M +AM +++RVI+VKLADR HNMRTL HM KQ
Sbjct: 130 LSQEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAP 189
Query: 290 -----------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 338
+ELE+LSF Y +++ ++ ++ KE EK +E+ ++ K+ +
Sbjct: 190 LANRLGISWIKTELEDLSFRYVKPQEFFALQAKLNKRKKEREKYIEDTCDLIRSKLAE-- 247
Query: 339 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRG-SINEVNQIAQLRIIIKPKPCSGVGPLCSP 397
+K E+ K YSIYK + KS+G ++++ I RII P
Sbjct: 248 ----RGLKGEVSGRFKHVYSIYKKI-KSQGIDFDQIHDIIAFRIIAPTAPS--------- 293
Query: 398 QQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEE 457
CY LGLVH +W P+P KD+IA PKPN YQSLHTT+I L E R+EVQIRT E
Sbjct: 294 ---CYEALGLVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSE---RVEVQIRTSE 347
Query: 458 MDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQE 517
M IAE GIAAH+ + GK V + + +WL + EWQ+
Sbjct: 348 MHKIAEEGIAAHW-----------------KYKEGKAVISKDDE---KFAWLRQLMEWQQ 387
Query: 518 EFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAA 577
+ +EF++T+ DL VFVFTP+G++++LP+GAT VD+AY IH+++GN+ V A
Sbjct: 388 DL---KDPKEFLETVKVDLFTDEVFVFTPKGDVRSLPRGATPVDFAYAIHSDVGNRCVGA 444
Query: 578 KVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRH--KQWLEHAKTRSARHKIMKFLRE 635
KVNG +V + + N + VE++T + Q+H K WL KT A+ +I F+++
Sbjct: 445 KVNGKIVPLRYKMKNGDTVEVLT--------SPQQHPSKDWLTFVKTSRAQQRIRGFIKQ 496
Query: 636 Q 636
Q
Sbjct: 497 Q 497
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In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp. Myxococcus xanthus (taxid: 34) EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 5 |
| >sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 | Back alignment and function description |
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| >sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2 | Back alignment and function description |
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| >sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 861 | ||||||
| 224131084 | 892 | predicted protein [Populus trichocarpa] | 0.982 | 0.948 | 0.788 | 0.0 | |
| 255564246 | 887 | guanosine-3',5'-bis(diphosphate) 3'-pyro | 0.980 | 0.951 | 0.777 | 0.0 | |
| 297743917 | 883 | unnamed protein product [Vitis vinifera] | 0.986 | 0.961 | 0.778 | 0.0 | |
| 225437434 | 887 | PREDICTED: GTP pyrophosphokinase-like [V | 0.986 | 0.957 | 0.775 | 0.0 | |
| 356503913 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.982 | 0.959 | 0.765 | 0.0 | |
| 356570978 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.982 | 0.959 | 0.762 | 0.0 | |
| 449469300 | 883 | PREDICTED: GTP pyrophosphokinase-like [C | 0.991 | 0.967 | 0.751 | 0.0 | |
| 449484441 | 883 | PREDICTED: LOW QUALITY PROTEIN: GTP pyro | 0.991 | 0.967 | 0.750 | 0.0 | |
| 30268666 | 876 | RelA-SpoT like protein RSH1 [Nicotiana t | 0.988 | 0.971 | 0.740 | 0.0 | |
| 307066606 | 885 | RSH1 [Ipomoea nil] | 0.997 | 0.970 | 0.724 | 0.0 |
| >gi|224131084|ref|XP_002320997.1| predicted protein [Populus trichocarpa] gi|222861770|gb|EEE99312.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1415 bits (3664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/890 (78%), Positives = 762/890 (85%), Gaps = 44/890 (4%)
Query: 1 MASAASMSVSVECVNICKL-PKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPA-HSS 58
MASA+S+SV VEC+NICKL KGDGSGRY +CSVLSCAWKAPR LTGFLAST HP+ S
Sbjct: 1 MASASSLSVPVECLNICKLLSKGDGSGRY-ECSVLSCAWKAPRVLTGFLASTAHPSPQCS 59
Query: 59 SLSLGPTGRRNRINSRCEAFDVGS-WCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSV 117
S G GRR + SRC+AFD G + +E SD LLG+ +S L HVA K+W+L S S+
Sbjct: 60 SFLCGRNGRRKQFKSRCKAFDTGGCYSSEDSDFALLGRFFKSRLHHVAGKKWQLSSSSSI 119
Query: 118 SSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVE 177
S+D F E SPERLWEDL+PT+SYLSP ELELV +AL LAFEAHDGQKRRSGEPFIIHPVE
Sbjct: 120 SADTFNEVSPERLWEDLKPTVSYLSPKELELVHKALKLAFEAHDGQKRRSGEPFIIHPVE 179
Query: 178 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLK 237
VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG VR IVEGETKVSKLGKLK
Sbjct: 180 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGPIVRHIVEGETKVSKLGKLK 239
Query: 238 CKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQS------- 290
CKNEN SVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMP HKQS
Sbjct: 240 CKNENESVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPLHKQSSIAMETL 299
Query: 291 -----------------ELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKK 333
ELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKIL KK
Sbjct: 300 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILKKK 359
Query: 334 IEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGP 393
IE+DQFLDL+TVKT++R+VCKEPYSIY+AVLKS+GSINEVNQIAQLRIII+PKPC G GP
Sbjct: 360 IEEDQFLDLLTVKTDVRAVCKEPYSIYRAVLKSKGSINEVNQIAQLRIIIQPKPCIGAGP 419
Query: 394 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQI 453
LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQI
Sbjct: 420 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQI 479
Query: 454 RTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 513
RTEEMDLIAERGIAAHYSGRVFVTGLVGHA PNGRS RGK VCLNNANIALRI WLNAIR
Sbjct: 480 RTEEMDLIAERGIAAHYSGRVFVTGLVGHAMPNGRSTRGKAVCLNNANIALRIGWLNAIR 539
Query: 514 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGE-----------IKNLPKGATVVDY 562
EWQEEFVGNM+SREFV+TITRDLLGS VFVFTPRGE IKNLPKGAT +DY
Sbjct: 540 EWQEEFVGNMSSREFVETITRDLLGSCVFVFTPRGEFWILIFDDMVQIKNLPKGATAIDY 599
Query: 563 AYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKT 622
AYMIHTEIGNKMVAAKVNGNLVSP HVLANAEVVEIITYNALSSKSAFQRHKQWL+HAKT
Sbjct: 600 AYMIHTEIGNKMVAAKVNGNLVSPMHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKT 659
Query: 623 RSARHKIMKFLREQAALSASEITADTVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMN 682
RSARHKIMKFLREQAALSA+EITAD+V DF+ADS ESEVED+SD +K+ +PLWEKILMN
Sbjct: 660 RSARHKIMKFLREQAALSAAEITADSVNDFIADSEGESEVEDISDNNKRSRPLWEKILMN 719
Query: 683 VVQMSSPVRNSKAVCSDDNASLWAPKVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHAN 742
VV+ SS + S + ++W PKVNGKHNK V + +G+L SQ N AKM+ A+
Sbjct: 720 VVEKSSQGKCSNDFLPVNYGTVWTPKVNGKHNKHV-----QTKGDLLSQGNGVAKMIQAS 774
Query: 743 VPMYKEVLPGLESWQASKIATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICS 802
+P YKEVLPGLESWQASK+A+WH+LEGHSIQWF VVCIDRRG+MA++ TALA V + ICS
Sbjct: 775 IPRYKEVLPGLESWQASKVASWHSLEGHSIQWFCVVCIDRRGMMAEIATALAAVDINICS 834
Query: 803 CVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTGCSWPSS 852
CV+E DRGRG+AVMLFH+EGNL+SLV CSSVDLI GVLGWSTGCSWPSS
Sbjct: 835 CVSETDRGRGMAVMLFHIEGNLDSLVKGCSSVDLIQGVLGWSTGCSWPSS 884
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564246|ref|XP_002523120.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi|223537682|gb|EEF39305.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297743917|emb|CBI36887.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225437434|ref|XP_002272154.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356503913|ref|XP_003520744.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356570978|ref|XP_003553659.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449469300|ref|XP_004152359.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449484441|ref|XP_004156884.1| PREDICTED: LOW QUALITY PROTEIN: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|307066606|gb|ADN23834.1| RSH1 [Ipomoea nil] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 861 | ||||||
| TAIR|locus:2137869 | 884 | RSH1 "RELA/SPOT homolog 1" [Ar | 0.662 | 0.644 | 0.735 | 0.0 | |
| TIGR_CMR|DET_0005 | 728 | DET_0005 "GTP pyrophosphokinas | 0.367 | 0.434 | 0.370 | 1.5e-91 | |
| TIGR_CMR|GSU_2236 | 716 | GSU_2236 "GTP pyrophosphokinas | 0.363 | 0.437 | 0.390 | 3.7e-87 | |
| TIGR_CMR|BA_4637 | 727 | BA_4637 "GTP pyrophosphokinase | 0.358 | 0.425 | 0.406 | 3.2e-83 | |
| UNIPROTKB|Q3A9Z8 | 716 | relA "GTP pyrophosphokinase" [ | 0.356 | 0.428 | 0.403 | 9.2e-81 | |
| TIGR_CMR|CHY_2223 | 716 | CHY_2223 "GTP pyrophosphokinas | 0.356 | 0.428 | 0.403 | 9.2e-81 | |
| TIGR_CMR|SO_0359 | 701 | SO_0359 "guanosine-3,5-bis(dip | 0.370 | 0.455 | 0.401 | 1.1e-74 | |
| TIGR_CMR|CBU_0303 | 707 | CBU_0303 "guanosine-3,5-bis(di | 0.369 | 0.449 | 0.383 | 4e-73 | |
| UNIPROTKB|Q9KNM2 | 705 | spoT "Guanosine-3',5'-bis(diph | 0.370 | 0.452 | 0.371 | 9.6e-70 | |
| TIGR_CMR|VC_2710 | 705 | VC_2710 "guanosine-3',5'-bis(d | 0.370 | 0.452 | 0.371 | 9.6e-70 |
| TAIR|locus:2137869 RSH1 "RELA/SPOT homolog 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2217 (785.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 422/574 (73%), Positives = 487/574 (84%)
Query: 289 QSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTE 348
+SELENLSFMY +AEDY +V R+A+LYKEHEKEL EAN+IL+KKIEDDQFLDL+TV T+
Sbjct: 314 KSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIEDDQFLDLVTVNTD 373
Query: 349 IRSVCKEPYSIYKAVLKSRGSINEVNQIAQ-LRIIIKPKPCSGVGPLCSPQQICYHVLGL 407
+RSVCKE YSIYKA LKS+GSIN+ NQIAQ LRI++KPKP GVGPLCSPQQICYHVLGL
Sbjct: 374 VRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYHVLGL 433
Query: 408 VHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIA 467
VH IW PIPR +KDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQIRTEEMDLIAERGIA
Sbjct: 434 VHEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIA 493
Query: 468 AHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSRE 527
+Y+G+ TGLVG+A P GR+ RGKT CLNNA+ ALR+ WLNAIREWQEEFVGNM+SRE
Sbjct: 494 VYYNGKSLSTGLVGNAVPLGRNSRGKTGCLNNADFALRVGWLNAIREWQEEFVGNMSSRE 553
Query: 528 FVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT 587
FVDTITRDLLGSRVFVFTP+GEIKNLPKGATVVDYAY+IHTEIGNKMVAAKVNGNLVSPT
Sbjct: 554 FVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNLVSPT 613
Query: 588 HVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITAD 647
HVL NAEVVEI+TYNALSSKSAFQRHKQWL+HAKTRSARHKIM+FLREQAA A+EIT D
Sbjct: 614 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLREQAAQCAAEITQD 673
Query: 648 TVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAP 707
V DFVADS +S+VEDL++ S++ WEKIL+NV Q S ++ + N S+WAP
Sbjct: 674 QVNDFVADS--DSDVEDLTEDSRKSLQWWEKILVNVKQFQSQDKSRDTTPAPQNGSVWAP 731
Query: 708 KVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHANVPMYKEVLPGLESWQASKIATWHNL 767
KVNGKHNK + S E E + A+++ AN+P YKEVLPGL+SW+ SKIATWH+L
Sbjct: 732 KVNGKHNKAIKN-SSSDEPEFLLPGDGIARILPANIPAYKEVLPGLDSWRDSKIATWHHL 790
Query: 768 EGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESL 827
EG SI+W VV +DR+GI+A+VTT LA G+ +CSCVAEIDRGRG+AVMLF +E N+ESL
Sbjct: 791 EGQSIEWLCVVSMDRKGIIAEVTTVLAAEGIALCSCVAEIDRGRGLAVMLFQIEANIESL 850
Query: 828 VNACSSVDLILGVLGWSTGCSWPSSKGDWQFHEC 861
V+ C+ VDL+LGVLGWS+GCSWP S + Q EC
Sbjct: 851 VSVCAKVDLVLGVLGWSSGCSWPRSTENAQVLEC 884
|
|
| TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SO_0359 SO_0359 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_0303 CBU_0303 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KNM2 spoT "Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_2710 VC_2710 "guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.6 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.6.5 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 861 | |||
| COG0317 | 701 | COG0317, SpoT, Guanosine polyphosphate pyrophospho | 1e-150 | |
| TIGR00691 | 683 | TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp | 1e-127 | |
| PRK11092 | 702 | PRK11092, PRK11092, bifunctional (p)ppGpp syntheta | 1e-103 | |
| PRK10872 | 743 | PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos | 3e-59 | |
| pfam13328 | 156 | pfam13328, HD_4, HD domain | 2e-43 | |
| smart00954 | 111 | smart00954, RelA_SpoT, Region found in RelA / SpoT | 4e-35 | |
| pfam04607 | 116 | pfam04607, RelA_SpoT, Region found in RelA / SpoT | 4e-34 | |
| cd01668 | 60 | cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S | 1e-30 | |
| cd05399 | 129 | cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( | 9e-30 | |
| pfam02824 | 60 | pfam02824, TGS, TGS domain | 9e-22 | |
| cd01616 | 60 | cd01616, TGS, The TGS domain, named after the ThrR | 4e-10 | |
| pfam01966 | 111 | pfam01966, HD, HD domain | 7e-08 | |
| smart00471 | 124 | smart00471, HDc, Metal dependent phosphohydrolases | 1e-06 | |
| cd00077 | 145 | cd00077, HDc, Metal dependent phosphohydrolases wi | 1e-06 | |
| cd01669 | 76 | cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-termina | 5e-06 | |
| COG2357 | 231 | COG2357, COG2357, PpGpp synthetase catalytic domai | 7e-06 | |
| PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; | 2e-05 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Revi | 4e-05 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 1e-04 | |
| cd01666 | 75 | cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentall | 4e-04 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 0.001 | |
| pfam10957 | 60 | pfam10957, DUF2758, Protein of unknown function (D | 0.002 | |
| cd04876 | 71 | cd04876, ACT_RelA-SpoT, ACT domain found C-termina | 0.002 | |
| pfam13291 | 77 | pfam13291, ACT_4, ACT domain | 0.003 |
| >gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 457 bits (1178), Expect = e-150
Identities = 201/531 (37%), Positives = 293/531 (55%), Gaps = 84/531 (15%)
Query: 130 LWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDW 189
E+L +++ P +++A A +AH GQ R+SGEP+I HP+EVA IL EL +D
Sbjct: 8 ELEELLDSLATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDM 67
Query: 190 ESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVK 249
E++AA LLHDT+EDT VT E IEE FG V ++VEG TK+ K+G+L + E +
Sbjct: 68 ETLAAALLHDTIEDTP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEEL------Q 120
Query: 250 ADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQS------------------- 290
A++LR+M LAM +++RV+++KLADRLHN+RTL ++ K+
Sbjct: 121 AENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGI 180
Query: 291 -----ELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTV 345
ELE+LSF Y + + Y ++ + + + E E+ +E L ++++ +
Sbjct: 181 GQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG------I 234
Query: 346 KTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVL 405
K E+ K YSIY+ + K + S +E+ + +RII+ CY L
Sbjct: 235 KAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVD------------TIPDCYTAL 282
Query: 406 GLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERG 465
G+VH +W PIP DYIA PKPNGYQSLHTT+I +EVQIRT+EM IAE G
Sbjct: 283 GIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVI---GPEGKPVEVQIRTKEMHEIAELG 339
Query: 466 IAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTS 525
+AAH+ R G + +I+WL + EWQEE + S
Sbjct: 340 VAAHW-----------------RYKEGGSAYEE------KIAWLRQLLEWQEE-SAD--S 373
Query: 526 REFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS 585
EF++ + DL RV+VFTP+G++ +LPKGAT +D+AY +HT+IG++ + AKVNG +V
Sbjct: 374 GEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVP 433
Query: 586 PTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQ 636
T L + VEIIT SK A + WL T AR KI + ++Q
Sbjct: 434 LTTKLQTGDQVEIIT-----SKHAGPS-RDWLNFVVTSRARAKIRAWFKKQ 478
|
Length = 701 |
| >gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222047 pfam13328, HD_4, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|217243 pfam02824, TGS, TGS domain | Back alignment and domain information |
|---|
| >gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >gnl|CDD|216815 pfam01966, HD, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|133439 cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
| >gnl|CDD|151404 pfam10957, DUF2758, Protein of unknown function (DUF2758) | Back alignment and domain information |
|---|
| >gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
| >gnl|CDD|222030 pfam13291, ACT_4, ACT domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 861 | |||
| COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases | 100.0 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 100.0 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 100.0 | |
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 100.0 | |
| KOG1157 | 543 | consensus Predicted guanosine polyphosphate pyroph | 100.0 | |
| PF13328 | 153 | HD_4: HD domain; PDB: 3NR1_B. | 99.95 | |
| PF04607 | 115 | RelA_SpoT: Region found in RelA / SpoT proteins; I | 99.93 | |
| cd05399 | 129 | NT_Rel-Spo_like Nucleotidyltransferase (NT) domain | 99.93 | |
| COG2357 | 231 | PpGpp synthetase catalytic domain [General functio | 99.91 | |
| PF02824 | 60 | TGS: TGS domain; InterPro: IPR004095 The TGS domai | 99.7 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 99.44 | |
| cd01666 | 75 | TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate | 99.28 | |
| cd01669 | 76 | TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma | 99.16 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 99.1 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 99.03 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 98.98 | |
| cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote | 98.9 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 98.65 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 98.56 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 98.55 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 98.48 | |
| cd04938 | 76 | TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma | 98.47 | |
| cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, | 98.47 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 98.46 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.39 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 98.36 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 98.35 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 98.35 | |
| cd01667 | 61 | TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn | 98.28 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 98.21 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.2 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 98.18 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 98.17 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 98.15 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 98.12 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 98.1 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 98.05 | |
| TIGR03276 | 179 | Phn-HD phosphonate degradation operons associated | 98.04 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 97.98 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 97.93 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 97.91 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.88 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 97.71 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 97.69 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 97.66 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 97.54 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 97.53 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 97.46 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 97.42 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 97.38 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 97.32 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 97.29 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 97.26 | |
| PRK00194 | 90 | hypothetical protein; Validated | 97.25 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 97.2 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 97.17 | |
| PRK05659 | 66 | sulfur carrier protein ThiS; Validated | 97.16 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 97.13 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 97.11 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 97.1 | |
| PRK06437 | 67 | hypothetical protein; Provisional | 97.06 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 97.04 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 97.02 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 97.0 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 96.99 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 96.97 | |
| cd04885 | 68 | ACT_ThrD-I Tandem C-terminal ACT domains of threon | 96.96 | |
| cd00565 | 65 | ThiS ThiaminS ubiquitin-like sulfur carrier protei | 96.95 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 96.95 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 96.92 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 96.89 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 96.84 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.81 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 96.81 | |
| cd04897 | 75 | ACT_ACR_3 ACT domain-containing protein which is c | 96.8 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 96.77 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 96.77 | |
| PRK01777 | 95 | hypothetical protein; Validated | 96.76 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 96.71 | |
| PRK06944 | 65 | sulfur carrier protein ThiS; Provisional | 96.69 | |
| PRK07440 | 70 | hypothetical protein; Provisional | 96.68 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 96.67 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 96.66 | |
| cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain o | 96.55 | |
| TIGR01683 | 64 | thiS thiamine biosynthesis protein ThiS. This mode | 96.51 | |
| PRK07696 | 67 | sulfur carrier protein ThiS; Provisional | 96.45 | |
| PRK08364 | 70 | sulfur carrier protein ThiS; Provisional | 96.41 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 96.36 | |
| PRK08053 | 66 | sulfur carrier protein ThiS; Provisional | 96.29 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 96.24 | |
| COG2104 | 68 | ThiS Sulfur transfer protein involved in thiamine | 96.2 | |
| TIGR00655 | 280 | PurU formyltetrahydrofolate deformylase. This mode | 96.18 | |
| PRK06027 | 286 | purU formyltetrahydrofolate deformylase; Reviewed | 95.95 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 95.95 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 95.94 | |
| PRK06488 | 65 | sulfur carrier protein ThiS; Validated | 95.78 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 95.78 | |
| cd04931 | 90 | ACT_PAH ACT domain of the nonheme iron-dependent a | 95.77 | |
| cd04904 | 74 | ACT_AAAH ACT domain of the nonheme iron-dependent, | 95.69 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 95.64 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 95.61 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 95.53 | |
| cd04929 | 74 | ACT_TPH ACT domain of the nonheme iron-dependent a | 95.52 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 95.5 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 95.48 | |
| PF03658 | 84 | Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 | 95.39 | |
| PLN02799 | 82 | Molybdopterin synthase sulfur carrier subunit | 95.39 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 95.37 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 95.29 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 95.28 | |
| cd04930 | 115 | ACT_TH ACT domain of the nonheme iron-dependent ar | 94.89 | |
| PF14451 | 81 | Ub-Mut7C: Mut7-C ubiquitin | 94.68 | |
| PRK06083 | 84 | sulfur carrier protein ThiS; Provisional | 94.63 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 94.53 | |
| PRK03059 | 856 | PII uridylyl-transferase; Provisional | 94.51 | |
| cd00754 | 80 | MoaD Ubiquitin domain of MoaD-like proteins. MoaD | 94.5 | |
| PRK05863 | 65 | sulfur carrier protein ThiS; Provisional | 94.43 | |
| PRK05007 | 884 | PII uridylyl-transferase; Provisional | 94.35 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 94.32 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 94.31 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 94.31 | |
| PRK05092 | 931 | PII uridylyl-transferase; Provisional | 94.29 | |
| PRK03381 | 774 | PII uridylyl-transferase; Provisional | 94.11 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.05 | |
| TIGR01693 | 850 | UTase_glnD [Protein-PII] uridylyltransferase. This | 93.86 | |
| cd04871 | 84 | ACT_PSP_2 ACT domains found N-terminal of phosphos | 93.83 | |
| PRK00275 | 895 | glnD PII uridylyl-transferase; Provisional | 93.74 | |
| TIGR00719 | 208 | sda_beta L-serine dehydratase, iron-sulfur-depende | 93.6 | |
| KOG2663 | 309 | consensus Acetolactate synthase, small subunit [Am | 93.36 | |
| PF02597 | 77 | ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam | 93.32 | |
| PRK03381 | 774 | PII uridylyl-transferase; Provisional | 93.2 | |
| PRK01759 | 854 | glnD PII uridylyl-transferase; Provisional | 93.11 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 93.1 | |
| PF06071 | 84 | YchF-GTPase_C: Protein of unknown function (DUF933 | 93.09 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 92.99 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 92.74 | |
| COG2150 | 167 | Predicted regulator of amino acid metabolism, cont | 92.66 | |
| PRK04374 | 869 | PII uridylyl-transferase; Provisional | 92.59 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 92.38 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 91.83 | |
| PRK11899 | 279 | prephenate dehydratase; Provisional | 91.28 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 91.24 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 91.05 | |
| COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide | 90.71 | |
| PRK05007 | 884 | PII uridylyl-transferase; Provisional | 90.42 | |
| COG3978 | 86 | Acetolactate synthase (isozyme II), small (regulat | 90.35 | |
| PRK01759 | 854 | glnD PII uridylyl-transferase; Provisional | 90.18 | |
| PRK00907 | 92 | hypothetical protein; Provisional | 90.01 | |
| TIGR01682 | 80 | moaD molybdopterin converting factor, subunit 1, n | 89.99 | |
| PRK05092 | 931 | PII uridylyl-transferase; Provisional | 89.86 | |
| PRK15385 | 225 | magnesium transport protein MgtC; Provisional | 89.68 | |
| PRK04374 | 869 | PII uridylyl-transferase; Provisional | 89.49 | |
| cd04913 | 75 | ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- | 89.37 | |
| cd04867 | 83 | TGS_YchF_C TGS_YchF_C: This subfamily represents T | 89.27 | |
| COG2914 | 99 | Uncharacterized protein conserved in bacteria [Fun | 89.15 | |
| PRK04998 | 88 | hypothetical protein; Provisional | 89.12 | |
| TIGR01693 | 850 | UTase_glnD [Protein-PII] uridylyltransferase. This | 89.11 | |
| PF03927 | 79 | NapD: NapD protein; InterPro: IPR005623 This entry | 88.78 | |
| TIGR01270 | 464 | Trp_5_monoox tryptophan 5-monooxygenase, tetrameri | 88.55 | |
| COG2844 | 867 | GlnD UTP:GlnB (protein PII) uridylyltransferase [P | 88.37 | |
| PRK00341 | 91 | hypothetical protein; Provisional | 88.19 | |
| PF13840 | 65 | ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 | 88.19 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 87.93 | |
| PLN02550 | 591 | threonine dehydratase | 87.46 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 87.09 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 87.02 | |
| PRK00275 | 895 | glnD PII uridylyl-transferase; Provisional | 86.82 | |
| PRK10622 | 386 | pheA bifunctional chorismate mutase/prephenate deh | 86.3 | |
| COG0077 | 279 | PheA Prephenate dehydratase [Amino acid transport | 85.87 | |
| PRK03059 | 856 | PII uridylyl-transferase; Provisional | 85.42 | |
| PRK10553 | 87 | assembly protein for periplasmic nitrate reductase | 85.32 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 85.21 | |
| PRK02047 | 91 | hypothetical protein; Provisional | 84.69 | |
| TIGR01268 | 436 | Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra | 83.7 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 83.4 | |
| PF04359 | 85 | DUF493: Protein of unknown function (DUF493); Inte | 82.12 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 81.94 | |
| TIGR01687 | 88 | moaD_arch MoaD family protein, archaeal. Members o | 81.81 | |
| PRK09169 | 2316 | hypothetical protein; Validated | 80.09 |
| >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-169 Score=1460.11 Aligned_cols=649 Identities=35% Similarity=0.543 Sum_probs=582.6
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 002985 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (861)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvE 202 (861)
.+++.+++.+.+. .|.++.+.+ +.+|+.||.++|.+|+|+||+|||.||++||.||+++++|.++++||||||++|
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vE 80 (701)
T COG0317 5 GCVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIE 80 (701)
T ss_pred ccccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHh
Confidence 5677777777776 566677666 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCHHHHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccC
Q 002985 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (861)
Q Consensus 203 Dt~~~t~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~ 282 (861)
||+ +|.++|++.||++|++||+||||+.+++++. +....|+|++||||+||++|+||++|||||||||||||.
T Consensus 81 Dt~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~ 153 (701)
T COG0317 81 DTP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLS------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLK 153 (701)
T ss_pred cCC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccC------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCc
Confidence 998 9999999999999999999999999886432 234458999999999999999999999999999999999
Q ss_pred CCCcccc------------------------cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002985 283 HMPPHKQ------------------------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 338 (861)
Q Consensus 283 ~~~~~kq------------------------~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~ 338 (861)
+++++|| ||||||||+|++|+.|+.|++.|.+.+.+|++++.+++..|++.|.++|
T Consensus 154 ~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~g 233 (701)
T COG0317 154 NLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG 233 (701)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9878887 9999999999999999999999999999999999999999999999884
Q ss_pred hcccccceeEEEEeecChhHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCcc
Q 002985 339 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 418 (861)
Q Consensus 339 ~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~ 418 (861)
|.++|.||+||+||||+||++|+..|+||+|++||||||++ ..|||++||+||.+|+|+|+|
T Consensus 234 ------i~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~------------~~dCY~~LGiVH~~~kp~Pgr 295 (701)
T COG0317 234 ------IKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT------------IPDCYTALGIVHTLWKPIPGE 295 (701)
T ss_pred ------CeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC------------hHHHHHHHHHHHhcCcCCCCc
Confidence 89999999999999999999999999999999999999996 469999999999999999999
Q ss_pred ccccccCCCCCCccceEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccc
Q 002985 419 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 498 (861)
Q Consensus 419 ~kDyIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (861)
||||||+||+||||||||||++++ |.++||||||++||..||+|+||||+||+++
T Consensus 296 FKDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~---------------------- 350 (701)
T COG0317 296 FDDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG---------------------- 350 (701)
T ss_pred cccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC----------------------
Confidence 999999999999999999999765 4799999999999999999999999999852
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCceEecCCCCcHHHHHHhhccccccceEEEE
Q 002985 499 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAK 578 (861)
Q Consensus 499 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dl~~~~I~VftP~G~i~~lp~gaT~lDfAy~iht~ig~~~~~ak 578 (861)
..+...+.||++|+|||++. .++.||+|++|.|||+|+||||||+|++++||.||||+||||+|||++|++|+|||
T Consensus 351 -~~~~~~~~Wlr~lle~q~~~---~d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAk 426 (701)
T COG0317 351 -SAYEEKIAWLRQLLEWQEES---ADSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAK 426 (701)
T ss_pred -chhhHHHHHHHHHHHHHHhc---CCcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEE
Confidence 11345689999999999995 35799999999999999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCccCCCCCeEEEEecCCCCCCcccCCChhHHHhhhccchHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCC
Q 002985 579 VNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGE 658 (861)
Q Consensus 579 Vng~~v~l~~~L~~gd~VeIit~~~~~~k~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~~ 658 (861)
|||++|||+++|+|||+|||+|+++. +|+++||+||+|+|||+|||+|||++.+++++..|+++|++.+.++++
T Consensus 427 VnG~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~ 500 (701)
T COG0317 427 VNGRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGL 500 (701)
T ss_pred ECCEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999863 599999999999999999999999999999999999999988886544
Q ss_pred C------------CcchhhhccCCCChhhHHHHHHHHhhcCCCccccccccccCCcccCCCcccCC------CCcccccc
Q 002985 659 E------------SEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGK------HNKRVHYV 720 (861)
Q Consensus 659 ~------------~~~edl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~------~akcc~PV 720 (861)
. .+.||||+++|.|+.+..++++.+. ...... ......... ......|.|. .++||+|+
T Consensus 501 ~~~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~-~~~~~~-~~~~~~~~~-~~~~~~v~G~~~l~~~~a~CC~Pi 577 (701)
T COG0317 501 PKELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQ-KLNEPP-LEKLSRKSI-GKGGVLVEGVGNLLTHLAKCCQPV 577 (701)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHH-hccccc-hhhhhcccc-CCCceEEeccCCceeEeecCCCCC
Confidence 2 4569999999999999999887776 221111 000000000 0123445553 48999999
Q ss_pred CCC-eeEEeecCCCceEEe--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeccccHHHHHHHHHHhC
Q 002985 721 GSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALATV 796 (861)
Q Consensus 721 pGD-IVGyITsrGRGItrh--dC~N~~~L~e~~~~~er~i~~~~V~W~~~~-~~~~a~I~V~a~DR~GlLadItsvIa~~ 796 (861)
||| |||||| +||||+|| ||+|+.++.. ..||||++ |+|+... ..|.+.|.|++.||+|+|+||+++|++.
T Consensus 578 pGD~IvG~it-~g~Gi~iHr~dC~~~~~~~~--~~per~i~---v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~ 651 (701)
T COG0317 578 PGDPIVGYIT-KGRGISIHRQDCPNFLQLAG--HAPERVID---VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANE 651 (701)
T ss_pred CCCcEEEEEe-cCCcEEEehhcChhHHHhhh--cCcceEEE---EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhC
Confidence 986 999997 99999998 9999888764 35789998 9998764 4567899999999999999999999999
Q ss_pred CcceeeeEEeEecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeeec
Q 002985 797 GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 845 (861)
Q Consensus 797 ~iNI~sv~~~~~~~~~~a~m~ftVE-~d~~~L~~l~~~L~~I~gV~~Vs~ 845 (861)
++||.++++.++ +.+.+.|.|+|+ +|..||.++|++|++++||++|.+
T Consensus 652 ~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 652 KINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred CCceEEeecccc-CCceEEEEEEEEECcHHHHHHHHHHHhcCCCeEEEEe
Confidence 999999999976 568999999999 999999999999999999999986
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13328 HD_4: HD domain; PDB: 3NR1_B | Back alignment and domain information |
|---|
| >PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat | Back alignment and domain information |
|---|
| >cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >COG2357 PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] | Back alignment and domain information |
|---|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
| >cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
| >cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF | Back alignment and domain information |
|---|
| >cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein | Back alignment and domain information |
|---|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PRK05659 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK06437 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein | Back alignment and domain information |
|---|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
| >PRK01777 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK06944 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK07440 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
| >cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
|---|
| >TIGR01683 thiS thiamine biosynthesis protein ThiS | Back alignment and domain information |
|---|
| >PRK07696 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK08364 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK08053 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >TIGR00655 PurU formyltetrahydrofolate deformylase | Back alignment and domain information |
|---|
| >PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK06488 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
| >cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) | Back alignment and domain information |
|---|
| >cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
| >cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes | Back alignment and domain information |
|---|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function | Back alignment and domain information |
|---|
| >PLN02799 Molybdopterin synthase sulfur carrier subunit | Back alignment and domain information |
|---|
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
| >cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) | Back alignment and domain information |
|---|
| >PF14451 Ub-Mut7C: Mut7-C ubiquitin | Back alignment and domain information |
|---|
| >PRK06083 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK03059 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >cd00754 MoaD Ubiquitin domain of MoaD-like proteins | Back alignment and domain information |
|---|
| >PRK05863 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK05007 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK05092 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK03381 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase | Back alignment and domain information |
|---|
| >cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
| >PRK00275 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
| >KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer | Back alignment and domain information |
|---|
| >PRK03381 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK01759 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04374 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK11899 prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
| >COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK05007 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown] | Back alignment and domain information |
|---|
| >PRK01759 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK00907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal | Back alignment and domain information |
|---|
| >PRK05092 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK15385 magnesium transport protein MgtC; Provisional | Back alignment and domain information |
|---|
| >PRK04374 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins | Back alignment and domain information |
|---|
| >cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown | Back alignment and domain information |
|---|
| >COG2914 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PRK04998 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase | Back alignment and domain information |
|---|
| >PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC | Back alignment and domain information |
|---|
| >TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric | Back alignment and domain information |
|---|
| >COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK00341 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D | Back alignment and domain information |
|---|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
| >PRK00275 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK03059 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK10553 assembly protein for periplasmic nitrate reductase; Provisional | Back alignment and domain information |
|---|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
| >PRK02047 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form | Back alignment and domain information |
|---|
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
| >PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function | Back alignment and domain information |
|---|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01687 moaD_arch MoaD family protein, archaeal | Back alignment and domain information |
|---|
| >PRK09169 hypothetical protein; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 861 | ||||
| 1vj7_A | 393 | Crystal Structure Of The Bifunctional Catalytic Fra | 4e-57 | ||
| 3nr1_A | 178 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 3e-13 | ||
| 3hvz_A | 78 | Crystal Structure Of The Tgs Domain Of The Clolep_0 | 1e-12 | ||
| 2kmm_A | 73 | Solution Nmr Structure Of The Tgs Domain Of Pg1808 | 4e-12 | ||
| 3nqw_A | 179 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 5e-05 |
| >pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 | Back alignment and structure |
|
| >pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 | Back alignment and structure |
| >pdb|3HVZ|A Chain A, Crystal Structure Of The Tgs Domain Of The Clolep_03100 Protein From Clostridium Leptum, Northeast Structural Genomics Consortium Target Qlr13a Length = 78 | Back alignment and structure |
| >pdb|2KMM|A Chain A, Solution Nmr Structure Of The Tgs Domain Of Pg1808 From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr122a (418-481) Length = 73 | Back alignment and structure |
| >pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 | Back alignment and structure |
|---|
Score = 407 bits (1049), Expect = e-135
Identities = 136/438 (31%), Positives = 224/438 (51%), Gaps = 80/438 (18%)
Query: 127 PERLWEDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGEL 185
E++ Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L
Sbjct: 5 INLTGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADL 64
Query: 186 ELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSV 245
LD ++A G LHD VEDT+ +T + IE +FG VR IV+G V+KLGK++ K S
Sbjct: 65 HLDAVTVACGFLHDVVEDTD-ITLDNIEFDFGKDVRDIVDG---VTKLGKVEYK----SH 116
Query: 246 QDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ---------------- 289
++ A++ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ
Sbjct: 117 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH 176
Query: 290 --------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLD 341
ELE+L+F Y N ++ K+ + + +E E +++ + +
Sbjct: 177 RLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQG--- 233
Query: 342 LMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQIC 401
+ ++ K YSIY+ + + +++ + +R +++ +
Sbjct: 234 ---LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQS------------DV 278
Query: 402 YHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLI-PFLYESMFRLEVQIRTEEMDL 460
Y ++G +H +W P+P KDYIA PK NGYQS+HTT+ P +E+QIRT+EM
Sbjct: 279 YAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK-----GPIEIQIRTKEMHQ 333
Query: 461 IAERGIAAH--YSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEE 518
+AE G+AAH Y +G +N A + ++W+ + E Q+
Sbjct: 334 VAEYGVAAHWAYK-------------------KGVRGKVNQAEQKVGMNWIKELVELQDA 374
Query: 519 FVGNMTSREFVDTITRDL 536
G+ + +FVD++
Sbjct: 375 SNGD--AVDFVDSLEHHH 390
|
| >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 | Back alignment and structure |
|---|
| >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 | Back alignment and structure |
|---|
| >2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 | Back alignment and structure |
|---|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78 | Back alignment and structure |
|---|
| >3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 | Back alignment and structure |
|---|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195 | Back alignment and structure |
|---|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Length = 93 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 | Back alignment and structure |
|---|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 861 | |||
| 1vj7_A | 393 | Bifunctional RELA/SPOT; HD domain, alpha beta 2-la | 100.0 | |
| 2be3_A | 226 | GTP pyrophosphokinase; structural genomics, PSI, p | 100.0 | |
| 3l9d_A | 255 | SMU.1046C, putative GTP pyrophosphokinase; transfe | 100.0 | |
| 3nqw_A | 179 | CG11900; stringent response, pyrophosphohydrolase, | 99.97 | |
| 3nr1_A | 178 | HD domain-containing protein 3; stringent response | 99.97 | |
| 3hvz_A | 78 | Uncharacterized protein; alpha-beta protein, struc | 99.86 | |
| 2eki_A | 93 | DRG 1, developmentally-regulated GTP-binding prote | 99.46 | |
| 2kmm_A | 73 | Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy | 99.31 | |
| 1wwt_A | 88 | Threonyl-tRNA synthetase, cytoplasmic; TGS domain, | 99.16 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 98.94 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 98.93 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 98.89 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 98.66 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 98.59 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 98.42 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 98.39 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 98.09 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 97.76 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.32 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.22 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 97.16 | |
| 2l32_A | 74 | Small archaeal modifier protein 2; protein BIN; NM | 96.76 | |
| 1f0z_A | 66 | THis protein; ubiquitin fold, transport protein; N | 96.74 | |
| 1tyg_B | 87 | YJBS; alpha beta barrel, protein-protein complex, | 96.7 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 96.68 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.66 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.66 | |
| 2hj1_A | 97 | Hypothetical protein; structural genomics, PSI, pr | 96.65 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.64 | |
| 1rws_A | 77 | Hypothetical protein PF1061; residual dipolar coup | 96.6 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.55 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 96.41 | |
| 3lou_A | 292 | Formyltetrahydrofolate deformylase; structural gen | 96.36 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 96.35 | |
| 1ryj_A | 70 | Unknown; beta/alpha protein, structural genomics, | 96.34 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 96.32 | |
| 2cu3_A | 64 | Unknown function protein; thermus thermophilus HB8 | 96.28 | |
| 3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transfe | 96.25 | |
| 3obi_A | 288 | Formyltetrahydrofolate deformylase; structural gen | 96.21 | |
| 2kl0_A | 73 | Putative thiamin biosynthesis THis; structural gen | 96.09 | |
| 2k5p_A | 78 | THis protein, thiamine-biosynthesis protein; NESG, | 96.09 | |
| 3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT | 95.87 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 95.76 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 95.57 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 95.32 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 95.21 | |
| 2q5w_D | 77 | Molybdopterin converting factor, subunit 1; MOCO, | 95.19 | |
| 3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural | 95.17 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 94.97 | |
| 3po0_A | 89 | Small archaeal modifier protein 1; ubiquitin-like | 94.69 | |
| 1vjk_A | 98 | Molybdopterin converting factor, subunit 1; struct | 94.45 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 94.18 | |
| 2re1_A | 167 | Aspartokinase, alpha and beta subunits; structural | 93.58 | |
| 1fm0_D | 81 | Molybdopterin convertin factor, subunit 1; molybde | 93.18 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 92.79 | |
| 2dt9_A | 167 | Aspartokinase; protein-ligand complex, regulatory | 90.89 | |
| 1rwu_A | 109 | Hypothetical UPF0250 protein YBED; mixed alpha-bet | 90.77 | |
| 2g1e_A | 90 | Hypothetical protein TA0895; MOAD, molybdopterin, | 90.47 | |
| 2qmx_A | 283 | Prephenate dehydratase; APC86053, L-Phe inhibition | 89.61 | |
| 2dtj_A | 178 | Aspartokinase; protein-ligand complex, regulatory | 89.14 | |
| 3s1t_A | 181 | Aspartokinase; ACT domain, threonine binding, regu | 88.44 | |
| 2jsx_A | 95 | Protein NAPD; TAT, proofreading, cytoplasm, chaper | 88.29 | |
| 3dwg_C | 93 | 9.5 kDa culture filtrate antigen CFP10A; sulfur ca | 86.36 | |
| 3rpf_C | 74 | Molybdopterin converting factor, subunit 1 (MOAD); | 86.28 | |
| 2l52_A | 99 | Methanosarcina acetivorans SAMP1 homolog; beta-grA | 86.19 | |
| 2qmw_A | 267 | PDT, prephenate dehydratase; APC85812, prephenate | 85.01 | |
| 3mwb_A | 313 | Prephenate dehydratase; L-Phe, PSI, MCSG, structur | 84.47 | |
| 1phz_A | 429 | Protein (phenylalanine hydroxylase); aromatic amin | 82.43 | |
| 4go7_X | 200 | Aspartokinase; transferase; 2.00A {Mycobacterium t | 82.24 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 81.16 | |
| 1v8c_A | 168 | MOAD related protein; riken structural genomics/pr | 81.01 | |
| 2nzc_A | 86 | Hypothetical protein; sturctural genomics, TM1266, | 80.89 |
| >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-92 Score=788.76 Aligned_cols=354 Identities=36% Similarity=0.598 Sum_probs=289.5
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCCccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 002985 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (861)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~lD~~ti~AALLHDvvE 202 (861)
.+|+.+.+.+.+. .|+++.+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|
T Consensus 5 ~~~~~~~l~~~~~---~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvE 81 (393)
T 1vj7_A 5 INLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVE 81 (393)
T ss_dssp CCCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHH
T ss_pred ccCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHh
Confidence 4577777777664 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCHHHHHHHHhhcccccccccccccCCcchhhhhHHHHHHHHHhcccCceEEEEeeehhhhcccccC
Q 002985 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (861)
Q Consensus 203 Dt~~~t~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLLAm~~DiRVvLIKLADRLhNMRtL~ 282 (861)
||+ +|.++|++.||++|+.||+||||++++. +. .....|+|++|||||||++|+||++|||||||||||++.
T Consensus 82 Dt~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~---~~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~ 153 (393)
T 1vj7_A 82 DTD-ITLDNIEFDFGKDVRDIVDGVTKLGKVE---YK----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLK 153 (393)
T ss_dssp HSS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC
T ss_pred cCC-CCHHHHHHHhCHHHHHHHHHHHhcccCC---cc----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchh
Confidence 998 9999999999999999999999987764 21 234568999999999999999999999999999999999
Q ss_pred CCCcccc------------------------cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002985 283 HMPPHKQ------------------------SELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 338 (861)
Q Consensus 283 ~~~~~kq------------------------~ELEdL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~ 338 (861)
.+|+++| ||||||||+||+|+.|+.|+++|.+.+.+++++++++...|++.|.+.+
T Consensus 154 ~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~g 233 (393)
T 1vj7_A 154 HLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQG 233 (393)
T ss_dssp ------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987 9999999999999999999999999999999999999999999998774
Q ss_pred hcccccceeEEEEeecChhHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCcc
Q 002985 339 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 418 (861)
Q Consensus 339 ~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Dl~giRIIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~ 418 (861)
+.+.|+||+|++||||+||+||+.+|++|+|++||||||++ .+|||.++|+||+.|+|+|++
T Consensus 234 ------i~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~------------~~dcy~vl~~i~~~~~~~~~~ 295 (393)
T 1vj7_A 234 ------LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET------------QSDVYAMVGYIHELWRPMPGR 295 (393)
T ss_dssp ------CCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS------------HHHHHHHHHHHHHHSCBCTTC
T ss_pred ------CceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC------------HHHHHHHHHHHHhcCCCCCCc
Confidence 78999999999999999999999999999999999999874 679999999999999999999
Q ss_pred ccccccCCCCCCccceEEEEeccCCccceeEEEEEechhHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCcccccc
Q 002985 419 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 498 (861)
Q Consensus 419 ~kDyIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~YK~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (861)
|||||++||+||||||||+|.++. + ++||||||..||.|||+||++||+||++.+ .. ..
T Consensus 296 ~kDyIa~PK~nGYqSlH~~v~~p~---~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~-----------~~------~~ 354 (393)
T 1vj7_A 296 FKDYIAAPKANGYQSIHTTVYGPK---G-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVR-----------GK------VN 354 (393)
T ss_dssp CEETTTSCCTTCCCCEEEEEECSS---S-EEEEEEEEHHHHHHHHHTTCC------------------------------
T ss_pred ccccccCCCcCCcceeEEEEEeCC---c-eEEEEEecHHHHHHHHhhHHHHhccccCCC-----------cc------cc
Confidence 999999999999999999998643 5 999999999999999999999999998421 00 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 002985 499 NANIALRISWLNAIREWQEEFVGNMTSREFV 529 (861)
Q Consensus 499 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~ 529 (861)
....+++++||++|+|||++. .++.||+
T Consensus 355 ~~~~~~~~~wl~~ll~~~~~~---~~~~ef~ 382 (393)
T 1vj7_A 355 QAEQKVGMNWIKELVELQDAS---NGDAVDF 382 (393)
T ss_dssp --------CHHHHHHHC--------------
T ss_pred hhhhHHHHHHHHHHHHHHhcC---CCcHHHH
Confidence 112335689999999999985 3577876
|
| >2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 | Back alignment and structure |
|---|
| >3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} | Back alignment and structure |
|---|
| >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} | Back alignment and structure |
|---|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} | Back alignment and structure |
|---|
| >1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 | Back alignment and structure |
|---|
| >1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 | Back alignment and structure |
|---|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
| >2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4 | Back alignment and structure |
|---|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A | Back alignment and structure |
|---|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
| >3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
|---|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 | Back alignment and structure |
|---|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
| >2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E | Back alignment and structure |
|---|
| >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
|---|
| >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A | Back alignment and structure |
|---|
| >3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
| >2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* | Back alignment and structure |
|---|
| >3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
| >3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A | Back alignment and structure |
|---|
| >1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 | Back alignment and structure |
|---|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
| >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
| >1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D | Back alignment and structure |
|---|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
| >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A | Back alignment and structure |
|---|
| >1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1 | Back alignment and structure |
|---|
| >2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A | Back alignment and structure |
|---|
| >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
| >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* | Back alignment and structure |
|---|
| >3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A | Back alignment and structure |
|---|
| >3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A | Back alignment and structure |
|---|
| >3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} | Back alignment and structure |
|---|
| >2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 | Back alignment and structure |
|---|
| >3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} | Back alignment and structure |
|---|
| >1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A | Back alignment and structure |
|---|
| >4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X | Back alignment and structure |
|---|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
| >1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1 | Back alignment and structure |
|---|
| >2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 861 | ||||
| d1vj7a1 | 192 | a.211.1.1 (A:5-196) Stringent response-like protei | 4e-34 | |
| d1vj7a2 | 175 | d.218.1.8 (A:197-371) Stringent response-like prot | 3e-21 | |
| d1wxqa2 | 76 | d.15.10.2 (A:320-395) GTP-binding protein PH0525 { | 1e-17 | |
| d2be3a1 | 203 | d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase | 1e-17 | |
| d1nyra2 | 59 | d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS | 1e-15 | |
| d1tkea1 | 62 | d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS | 2e-15 | |
| d1zpva1 | 83 | d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto | 6e-06 | |
| d1u8sa1 | 86 | d.58.18.5 (A:2-87) putative transcriptional repres | 3e-05 | |
| d1y7pa2 | 77 | d.58.18.12 (A:2-78) Hypothetical protein AF1403, N | 1e-04 | |
| d1u8sa2 | 93 | d.58.18.5 (A:88-180) putative transcriptional repr | 6e-04 | |
| d1zs3a1 | 171 | a.25.1.1 (A:3-173) Dodecameric ferritin homolog {L | 8e-04 |
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Stringent response-like protein RelA N-terminal domain species: Streptococcus equisimilis [TaxId: 119602]
Score = 127 bits (319), Expect = 4e-34
Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 32/194 (16%)
Query: 132 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES 191
E + Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L LD +
Sbjct: 7 EVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVT 66
Query: 192 IAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKAD 251
+A G LHD VEDT++ T + IE +FG VR IV+G TK+ K E S ++ A+
Sbjct: 67 VACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDGVTKLGK-------VEYKSHEEQLAE 118
Query: 252 DLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ---------------------- 289
+ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178
Query: 290 --SELENLSFMYTN 301
ELE+L+F Y N
Sbjct: 179 IKWELEDLAFRYLN 192
|
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 | Back information, alignment and structure |
|---|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76 | Back information, alignment and structure |
|---|
| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 | Back information, alignment and structure |
|---|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83 | Back information, alignment and structure |
|---|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86 | Back information, alignment and structure |
|---|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77 | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93 | Back information, alignment and structure |
|---|
| >d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]} Length = 171 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 861 | |||
| d1vj7a2 | 175 | Stringent response-like protein RelA domain 2 {Str | 100.0 | |
| d1vj7a1 | 192 | Stringent response-like protein RelA N-terminal do | 100.0 | |
| d2be3a1 | 203 | Putative GTP pyrophosphokinase SP1097 {Streptococc | 99.96 | |
| d1wxqa2 | 76 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.62 | |
| d1tkea1 | 62 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.57 | |
| d1nyra2 | 59 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.51 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 99.17 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 98.47 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 98.46 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 98.46 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 98.43 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 98.41 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 97.87 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 97.8 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 97.77 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.37 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.07 | |
| d1zud21 | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 96.45 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 96.0 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 95.96 | |
| d2hj1a1 | 77 | Hypothetical protein HI0395 {Haemophilus influenza | 95.6 | |
| d1rwsa_ | 68 | Hypothetical protein PF1061 {Archaeon Pyrococcus f | 94.58 | |
| d1tygb_ | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 94.37 | |
| d2cu3a1 | 63 | Uncharacterised protein TTHA0675 {Thermus thermoph | 94.28 | |
| d1vjka_ | 88 | Molybdopterin synthase subunit MoaD {Pyrococcus fu | 93.33 | |
| d1rwua_ | 87 | Hypothetical protein ybeD {Escherichia coli [TaxId | 93.06 | |
| d1ni3a2 | 82 | YchF GTP-binding protein, C-terminal domain {Fissi | 91.58 | |
| d1jala2 | 85 | YchF GTP-binding protein, C-terminal domain {Haemo | 91.2 | |
| d2hmfa2 | 67 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 88.37 | |
| d2hmfa3 | 100 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 84.86 | |
| d2cdqa2 | 91 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 84.41 | |
| d2nzca1 | 80 | Hypothetical protein TM1266 {Thermotoga maritima [ | 82.52 | |
| d2cdqa3 | 75 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 81.53 |
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nucleotidyltransferase superfamily: Nucleotidyltransferase family: RelA/SpoT domain domain: Stringent response-like protein RelA domain 2 species: Streptococcus equisimilis [TaxId: 119602]
Probab=100.00 E-value=2e-50 Score=402.71 Aligned_cols=152 Identities=30% Similarity=0.530 Sum_probs=137.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccceeEEEEeecChhHHHHHHHhcCCCcccccceeeEE
Q 002985 301 NAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLR 380 (861)
Q Consensus 301 ~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Dl~giR 380 (861)
+|| |++|.+.|++.+.+|++++.++...|++.|.+.+ +.++|.||+||+||||+||++++.+|++|+|++|||
T Consensus 1 e~E-Y~~I~~~l~~~r~~re~~i~~i~~~L~~~L~~~~------i~~~I~gR~K~~ySI~~Km~~k~~~~~~i~Di~aiR 73 (175)
T d1vj7a2 1 ETE-FYKISHMMNEKRREREALVDDIVTKIKSYTTEQG------LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIR 73 (175)
T ss_dssp HHH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTT------CCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEE
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CccEEEEEEccHHHHHHHHHhcCCChhhccccceEE
Confidence 366 9999999999999999999999999999998874 789999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccCCCccccccccCCCCCCccceEEEEeccCCccceeEEEEEechhHHH
Q 002985 381 IIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDL 460 (861)
Q Consensus 381 IIv~~~~~~~~~~~~~~~~dCY~vlg~vh~~~~pip~~~kDyIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~ 460 (861)
|||++ .+|||++||+||+.|+|+|++|||||++||+||||||||+|+++. .++||||||.+||.
T Consensus 74 IIv~~------------~~dcy~~lg~ih~~~~p~~~r~kDyI~~PK~nGYqSLHt~v~~~~----~~~evqIRT~~M~~ 137 (175)
T d1vj7a2 74 CVMET------------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK----GPIEIQIRTKEMHQ 137 (175)
T ss_dssp EEESS------------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSS----SEEEEEEEEHHHHH
T ss_pred EEEee------------cccHHHHHHHHHhcCCceeeccccccccCCCCCcceEEEEEEcCC----ccEEEEEEehHHHH
Confidence 99885 679999999999999999999999999999999999999998654 37999999999999
Q ss_pred HHHHHHHHhhccccc
Q 002985 461 IAERGIAAHYSGRVF 475 (861)
Q Consensus 461 ~AE~G~aahw~YK~~ 475 (861)
|||+|+||||+||++
T Consensus 138 ~Ae~G~aahw~Yk~~ 152 (175)
T d1vj7a2 138 VAEYGVAAHWAYKKG 152 (175)
T ss_dssp HHHHTTCC-------
T ss_pred HHhhhHHHHHhhccC
Confidence 999999999999975
|
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
|---|
| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|