Citrus Sinensis ID: 002996

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
ccccccccHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEEEEccccccccEEEEEcccccccccccccccccccccccEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEEEEEEEEEcccccccHHHHHHHHccccccccEEEcccccccccHHHHHHHHHHccEEEEEccccccccEEEEEEEEccccEEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHcEEEEEEcccccEEEHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccEEEEEEEEEcccEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEEccHHHHEcccccccHHHHHHHHHHccHHHcEEEEccccccccHHHHHHHHHHccEEEEEEEccccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHcc
mtvgkdvsSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnpLIRALAVRTMGCIRVDKITEYLcdplqrclkdddpyvRKTAAICVAKLYDINAELVEDRGFLESLKdlisdnnpmVVANAVAALAEIeenssrpifeiTSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERvtprlqhaNCAVVLSAMILQQMELITSTDVVRNLCkkmapplvtllsaepeIQYVALRNINLIVQRRPTILAHEIKVFFckyndpiyvkMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESldtldepeaKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLkkptegpqQMIQVVLNNatvetdnpdlrdRAYIYWRLLstdpeaakdvvlaekpvisddsnqldpSLLDELLANIATLssvyhkppeaFVTRVKTtasrtddedypngseqgysdapthvadegaspqtsssnapyaatrqpapppaapvsppvpdllgdligldnsaaivpadqaaaspvpalpvvlpastgqglqigaeltrqdGQVFYSMLFenntqtpldgfmIQFNKNTFglaaggalqvpqlqpgtsgrtllPMVLfqnmsagppssLLQVAVKNnqqpvwyfndkisLHVLFTEDGRMERGSFLEtwrslpdsnevlkdlpgvvvsNVEATLDLLAASNMFFIAKRKnanqdvfyfsakippgvpfLIELTTvignpgvkcaiktpnpdiASLFFEAIETLLKA
mtvgkdvsslfTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnPLIRALAVRTMGCIRVDKITEYLCDPlqrclkdddpyVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEyatevdvdfVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLnnatvetdnpdlRDRAYIYWRLLSTDPEAAKDVVLAEkpvisddsnqLDPSLLDELLANIATLssvyhkppeafVTRVKTtasrtddedypngSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDnnpmvvanavaalaeieenSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADellesflesfpeepAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNapyaatrqpapppaapvsppvpDLLGDLIGLDNSAAIVPADQaaaspvpalpvvlpasTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
********SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPV**********SLLDELLANIATLSSVYHKPPEAFV*******************************************************************LGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNM******SLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL***
*TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA*****************DELLANIATLSSVYHK*****************************************************************************************************VVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAA************TSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLP*******************TLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHV****************************PVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
****KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTR********************************************************************L*GLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCAIKTPNPDIASLFFEAIETLLKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query860 2.2.26 [Sep-21-2011]
O81742893 Beta-adaptin-like protein yes no 0.987 0.950 0.856 0.0
Q9SUS3894 Beta-adaptin-like protein no no 0.988 0.950 0.865 0.0
O35643943 AP-1 complex subunit beta yes no 0.988 0.901 0.572 0.0
Q10567949 AP-1 complex subunit beta yes no 0.983 0.891 0.565 0.0
P63009937 AP-2 complex subunit beta no no 0.981 0.900 0.555 0.0
P62944937 AP-2 complex subunit beta yes no 0.981 0.900 0.555 0.0
P63010937 AP-2 complex subunit beta no no 0.981 0.900 0.555 0.0
Q9DBG3937 AP-2 complex subunit beta no no 0.981 0.900 0.555 0.0
Q08DS7951 AP-1 complex subunit beta no no 0.988 0.893 0.546 0.0
Q54X82942 AP-1 complex subunit beta yes no 0.636 0.580 0.730 0.0
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 Back     alignment and function desciption
 Score = 1483 bits (3840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 738/862 (85%), Positives = 784/862 (90%), Gaps = 13/862 (1%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLE+LKDLISDNNPMVVANAVAALAEI+ENS+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct: 163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITSTDVVRNLCK 238
           ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSA  MILQQMELITSTDV+RNLCK
Sbjct: 223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query: 239 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 298
           KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 299 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 358
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 359 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 418
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 419 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 478
           DELLESFLE+FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct: 463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query: 479 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 538
           RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query: 539 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAP 598
           VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP   S+   Y      AP     
Sbjct: 583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASP---SATTGYVTKLAAAP----- 634

Query: 599 VSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQV 658
              PVPDLLGDL+G DN AAIVP D+        LPVVLPAS GQGLQI A+LTRQDGQV
Sbjct: 635 --APVPDLLGDLMGSDN-AAIVPVDEPTTPSGRPLPVVLPASKGQGLQISAQLTRQDGQV 691

Query: 659 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAG 718
           FYSML ENN+Q+ LDGFMIQFNKN+FGLAA G+LQVP LQPG S RT++PMVL QNMS G
Sbjct: 692 FYSMLLENNSQSLLDGFMIQFNKNSFGLAAVGSLQVPPLQPGASARTMMPMVLSQNMSTG 751

Query: 719 PPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPG 778
             SS+LQVAVKNNQQPVWYF DKI L+ LF+EDGRMERG+FLETW+SLPDSNEV K+ PG
Sbjct: 752 STSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLPDSNEVQKEFPG 811

Query: 779 VVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCA 838
           + +++VE+TLDLLAASNMFFIAKRKN NQDV Y SAK+P G+PFLIELT ++G PG+KCA
Sbjct: 812 ITITSVESTLDLLAASNMFFIAKRKNGNQDVLYLSAKVPRGIPFLIELTAIVGQPGLKCA 871

Query: 839 IKTPNPDIASLFFEAIETLLKA 860
           +KTP P+IA LFFEA+E L KA
Sbjct: 872 VKTPTPEIAPLFFEAVEILFKA 893
Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD PE=1 SV=1 Back     alignment and function description
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2 Back     alignment and function description
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2 Back     alignment and function description
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 Back     alignment and function description
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query860
224074998904 predicted protein [Populus trichocarpa] 0.998 0.950 0.898 0.0
224053869904 predicted protein [Populus trichocarpa] 0.998 0.950 0.889 0.0
356497341891 PREDICTED: beta-adaptin-like protein C-l 0.982 0.948 0.886 0.0
356543839898 PREDICTED: beta-adaptin-like protein C-l 0.993 0.951 0.879 0.0
297742217920 unnamed protein product [Vitis vinifera] 0.996 0.931 0.877 0.0
356543841915 PREDICTED: beta-adaptin-like protein C-l 0.993 0.933 0.879 0.0
225426194903 PREDICTED: beta-adaptin-like protein C [ 0.997 0.950 0.876 0.0
255564498903 AP-2 complex subunit beta-1, putative [R 0.994 0.946 0.892 0.0
356539170898 PREDICTED: beta-adaptin-like protein C-l 0.990 0.948 0.884 0.0
357474047896 AP-2 complex subunit beta [Medicago trun 0.990 0.950 0.873 0.0
>gi|224074998|ref|XP_002304511.1| predicted protein [Populus trichocarpa] gi|222841943|gb|EEE79490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1569 bits (4063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 775/863 (89%), Positives = 813/863 (94%), Gaps = 4/863 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLESLKDLISDNNPMVVANAVAALAEI++NS RPIFEITSHTLSKLLTALNECTEWGQVF
Sbjct: 163 FLESLKDLISDNNPMVVANAVAALAEIQDNSVRPIFEITSHTLSKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITSTDVVRNLCK 238
           ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA  MILQQME+ITSTDVVRNLCK
Sbjct: 223 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEIITSTDVVRNLCK 282

Query: 239 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 298
           KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 299 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 358
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 359 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 418
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 419 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 478
           DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNAT+ETDNPDLRD
Sbjct: 463 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATMETDNPDLRD 522

Query: 479 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 538
           RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 582

Query: 539 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPA-A 597
           VTRVKT A +T+D++Y  GSE GYS++  H AD  ASP TS+SN PYA  RQ AP P+ +
Sbjct: 583 VTRVKTAAQKTEDDEYAEGSEAGYSESSAHTADGAASPPTSASNVPYAGARQAAPAPSTS 642

Query: 598 PVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQ 657
           P + P+PDL+GDL+ +DNS A+VP DQ +    P LPV+LPA+TGQGLQI A+L  +DGQ
Sbjct: 643 PPAAPLPDLMGDLLDMDNS-AMVPVDQPSTPASPPLPVLLPAATGQGLQISAQLISRDGQ 701

Query: 658 VFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSA 717
           +FYS+LFENN+Q PLDGFMIQFNKN+FGLAA G LQVPQLQPGTS  TLLP+ LFQNMSA
Sbjct: 702 IFYSLLFENNSQIPLDGFMIQFNKNSFGLAAAGPLQVPQLQPGTSAATLLPVALFQNMSA 761

Query: 718 GPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLP 777
           GPPSSLLQVAVKNNQQPVWYFNDKISLHV FTEDGRMERGSFLETWRSLPDSNEV KD P
Sbjct: 762 GPPSSLLQVAVKNNQQPVWYFNDKISLHVFFTEDGRMERGSFLETWRSLPDSNEVSKDFP 821

Query: 778 GVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKC 837
           G+ V+ VEATLD LAASNMFFIAKRK+ANQDVFYFSAK+P G+PFL ELTTV+G PG+KC
Sbjct: 822 GITVNGVEATLDRLAASNMFFIAKRKHANQDVFYFSAKMPRGIPFLTELTTVVGIPGIKC 881

Query: 838 AIKTPNPDIASLFFEAIETLLKA 860
           AIKTPNP++ASLFFEAIETLLK 
Sbjct: 882 AIKTPNPEMASLFFEAIETLLKG 904

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053869|ref|XP_002298020.1| predicted protein [Populus trichocarpa] gi|222845278|gb|EEE82825.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497341|ref|XP_003517519.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information
>gi|356543839|ref|XP_003540367.1| PREDICTED: beta-adaptin-like protein C-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297742217|emb|CBI34366.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543841|ref|XP_003540368.1| PREDICTED: beta-adaptin-like protein C-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225426194|ref|XP_002279641.1| PREDICTED: beta-adaptin-like protein C [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564498|ref|XP_002523245.1| AP-2 complex subunit beta-1, putative [Ricinus communis] gi|223537541|gb|EEF39166.1| AP-2 complex subunit beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356539170|ref|XP_003538073.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information
>gi|357474047|ref|XP_003607308.1| AP-2 complex subunit beta [Medicago truncatula] gi|355508363|gb|AES89505.1| AP-2 complex subunit beta [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query860
TAIR|locus:2117924893 AT4G23460 [Arabidopsis thalian 0.987 0.950 0.802 0.0
UNIPROTKB|E2RRJ6939 AP1B1 "Uncharacterized protein 0.667 0.611 0.672 1.6e-241
UNIPROTKB|F1RFI2947 AP1B1 "Uncharacterized protein 0.625 0.568 0.707 2.1e-241
UNIPROTKB|F1MIF2946 AP1B1 "Uncharacterized protein 0.625 0.568 0.705 5.4e-241
MGI|MGI:1096368943 Ap1b1 "adaptor protein complex 0.625 0.570 0.707 8.8e-241
UNIPROTKB|I3LV02949 AP1B1 "Uncharacterized protein 0.625 0.566 0.707 1.8e-240
UNIPROTKB|Q10567949 AP1B1 "AP-1 complex subunit be 0.625 0.566 0.707 2.3e-240
ZFIN|ZDB-GENE-061025-1947 ap1b1 "adaptor-related protein 0.660 0.599 0.672 3.8e-240
RGD|2064949 Ap1b1 "adaptor-related protein 0.625 0.566 0.703 3.4e-239
UNIPROTKB|P52303949 Ap1b1 "AP-1 complex subunit be 0.625 0.566 0.703 3.4e-239
TAIR|locus:2117924 AT4G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3456 (1221.6 bits), Expect = 0., P = 0.
 Identities = 692/862 (80%), Positives = 737/862 (85%)

Query:     1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
             MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct:    43 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query:    61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
             LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct:   103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query:   121 FLESLKDLISDXXXXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
             FLE+LKDLISD                   S+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct:   163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query:   181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA--MILQQMELITSTDVVRNLCK 238
             ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSA  MILQQMELITSTDV+RNLCK
Sbjct:   223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query:   239 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 298
             KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct:   283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query:   299 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 358
             IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct:   343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query:   359 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 418
             VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct:   403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query:   419 DXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 478
             D              AQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct:   463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query:   479 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 538
             RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct:   523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query:   539 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXX 598
             VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP  ++                  
Sbjct:   583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASPSATTG----------YVTKLAA 632

Query:   599 XXXXXXDLLGDLIGLDNSAAIVPADQXXXXXXXXXXXXXXXXTGQGLQIGAELTRQDGQV 658
                   DLLGDL+G DN AAIVP D+                 GQGLQI A+LTRQDGQV
Sbjct:   633 APAPVPDLLGDLMGSDN-AAIVPVDEPTTPSGRPLPVVLPASKGQGLQISAQLTRQDGQV 691

Query:   659 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAG 718
             FYSML ENN+Q+ LDGFMIQFNKN+FGLAA G+LQVP LQPG S RT++PMVL QNMS G
Sbjct:   692 FYSMLLENNSQSLLDGFMIQFNKNSFGLAAVGSLQVPPLQPGASARTMMPMVLSQNMSTG 751

Query:   719 PPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPG 778
               SS+LQVAVKNNQQPVWYF DKI L+ LF+EDGRMERG+FLETW+SLPDSNEV K+ PG
Sbjct:   752 STSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLPDSNEVQKEFPG 811

Query:   779 VVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCA 838
             + +++VE+TLDLLAASNMFFIAKRKN NQDV Y SAK+P G+PFLIELT ++G PG+KCA
Sbjct:   812 ITITSVESTLDLLAASNMFFIAKRKNGNQDVLYLSAKVPRGIPFLIELTAIVGQPGLKCA 871

Query:   839 IKTPNPDIASLFFEAIETLLKA 860
             +KTP P+IA LFFEA+E L KA
Sbjct:   872 VKTPTPEIAPLFFEAVEILFKA 893
GO:0005634 "nucleus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|E2RRJ6 AP1B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFI2 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIF2 AP1B1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1096368 Ap1b1 "adaptor protein complex AP-1, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LV02 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q10567 AP1B1 "AP-1 complex subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061025-1 ap1b1 "adaptor-related protein complex 1, beta 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2064 Ap1b1 "adaptor-related protein complex 1, beta 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P52303 Ap1b1 "AP-1 complex subunit beta-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81742APBLC_ARATHNo assigned EC number0.85610.98720.9507yesno
O35643AP1B1_MOUSENo assigned EC number0.57290.98830.9013yesno
P62944AP2B1_RATNo assigned EC number0.55540.98130.9007yesno
Q54X82AP1B_DICDINo assigned EC number0.73090.63600.5806yesno
Q10567AP1B1_HUMANNo assigned EC number0.56560.98370.8914yesno
Q9SUS3APBLB_ARATHNo assigned EC number0.86540.98830.9507nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query860
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 0.0
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 1e-147
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 1e-143
pfam12717171 pfam12717, Cnd1, non-SMC mitotic condensation comp 6e-41
pfam09066113 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage 7e-33
smart01020111 smart01020, B2-adapt-app_C, Beta2-adaptin appendag 3e-32
smart00809104 smart00809, Alpha_adaptinC2, Adaptin C-terminal do 3e-13
pfam02883115 pfam02883, Alpha_adaptinC2, Adaptin C-terminal dom 5e-12
COG5240898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 5e-10
pfam1364688 pfam13646, HEAT_2, HEAT repeats 1e-08
pfam1364688 pfam13646, HEAT_2, HEAT repeats 1e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 3e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 9e-04
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  548 bits (1414), Expect = 0.0
 Identities = 203/496 (40%), Positives = 300/496 (60%), Gaps = 11/496 (2%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           + +G+D+S LF +VV  + + +  LK+L YLYL   A+  PDLAIL  N+  KD Q PNP
Sbjct: 33  IMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNP 92

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIR LA+RT+ CIRV ++   L   +++ L D DPYVRK AA+ + KLY  + +LV D  
Sbjct: 93  LIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRD-F 151

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
            +  LK+L+SD +P VV+ AVA L EI +N    + ++    + +L   L  C  W QV 
Sbjct: 152 LVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVK 211

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAMILQQMELITSTDVVRNLCKKM 240
           IL  L+RY   D RE + ++E +   LQ++N AV+  A     ++ I   D    L    
Sbjct: 212 ILRLLTRYAPQDPREPKELLEDILNLLQNSNNAVLYEA-----VKTIIHLDPEPELIVLA 266

Query: 241 APPLVTLLSAEPE-IQYVALRNINLIVQRRP-TILAHEIKVFFCKYNDPIYVKMEKLEIM 298
              L  LLS+  E ++YVALRN+N I+++ P  +   ++ +F  K +D I +++  L+++
Sbjct: 267 VNALGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALDLL 326

Query: 299 IKLASDRNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI 357
            KL  + N+ +++ E  +Y +E+ D +F  K V+AIGR A K    AE CI VLLEL+ +
Sbjct: 327 YKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELLSL 386

Query: 358 KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-D 416
             +YVV E + VI+DI R+YP   E I+  LCE L+ ++ PEA+A+ +WI+GEY E I +
Sbjct: 387 AGSYVVDEIVEVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGELIPN 446

Query: 417 NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ-MIQVVLNNATVETDNPD 475
           +  +LL S LE F  E  +V+L LLTA VKL L  P E  Q  ++QVVL+ AT ++ + +
Sbjct: 447 SPSDLLRSILEVFVLESLKVRLALLTALVKLSLTFPDEEVQNLIVQVVLSLATQDSSDLE 506

Query: 476 LRDRAYIYWRLLSTDP 491
           LRDRA  Y RLLS   
Sbjct: 507 LRDRAVEYLRLLSLAD 522

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>gnl|CDD|220099 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information
>gnl|CDD|198088 smart01020, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|217268 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 860
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF02296113 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal dom 99.7
PF09066114 B2-adapt-app_C: Beta2-adaptin appendage, C-termina 99.45
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.38
PTZ00429746 beta-adaptin; Provisional 99.15
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 99.14
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.04
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.02
PRK09687280 putative lyase; Provisional 99.0
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.97
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.9
PRK09687280 putative lyase; Provisional 98.87
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.83
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.81
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.75
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.65
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 98.65
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.57
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.54
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.52
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.52
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 98.46
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.35
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 98.32
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.3
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.2
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.17
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.12
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 98.11
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.07
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.04
PF14807104 AP4E_app_platf: Adaptin AP4 complex epsilon append 97.94
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.9
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.88
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.87
PF08752151 COP-gamma_platf: Coatomer gamma subunit appendage 97.85
KOG18241233 consensus TATA-binding protein-interacting protein 97.82
PF05804708 KAP: Kinesin-associated protein (KAP) 97.68
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.62
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.58
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.51
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.5
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.5
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.49
KOG04141251 consensus Chromosome condensation complex Condensi 97.43
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.42
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.37
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.33
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.27
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.27
TIGR02270410 conserved hypothetical protein. Members are found 97.25
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.22
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.21
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.19
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.18
KOG18241233 consensus TATA-binding protein-interacting protein 97.17
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.13
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.12
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.03
KOG1242569 consensus Protein containing adaptin N-terminal re 97.03
PF05804708 KAP: Kinesin-associated protein (KAP) 97.0
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.99
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.96
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 96.96
KOG1242569 consensus Protein containing adaptin N-terminal re 96.93
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 96.87
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.86
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.86
TIGR02270410 conserved hypothetical protein. Members are found 96.85
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 96.85
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 96.75
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 96.7
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.47
KOG22741005 consensus Predicted importin 9 [Intracellular traf 96.47
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 96.36
COG50981128 Chromosome condensation complex Condensin, subunit 96.36
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.35
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.33
COG50981128 Chromosome condensation complex Condensin, subunit 96.33
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.27
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 96.25
KOG12401431 consensus Protein kinase containing WD40 repeats [ 96.24
KOG4224550 consensus Armadillo repeat protein VAC8 required f 96.2
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.09
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.04
KOG0414 1251 consensus Chromosome condensation complex Condensi 95.89
KOG01681051 consensus Putative ubiquitin fusion degradation pr 95.87
KOG1820815 consensus Microtubule-associated protein [Cytoskel 95.78
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.7
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.68
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 95.65
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.46
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.11
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 95.07
PF14500262 MMS19_N: Dos2-interacting transcription regulator 94.93
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.57
smart00638574 LPD_N Lipoprotein N-terminal Domain. 94.56
KOG12481176 consensus Uncharacterized conserved protein [Funct 94.28
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.97
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.7
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.68
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.45
KOG0413 1529 consensus Uncharacterized conserved protein relate 92.86
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 92.83
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.6
KOG09151702 consensus Uncharacterized conserved protein [Funct 92.02
KOG19491005 consensus Uncharacterized conserved protein [Funct 91.44
KOG19491005 consensus Uncharacterized conserved protein [Funct 91.36
PF05004309 IFRD: Interferon-related developmental regulator ( 91.22
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.94
KOG12481176 consensus Uncharacterized conserved protein [Funct 90.93
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 90.77
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 90.67
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 90.42
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 90.34
KOG15171387 consensus Guanine nucleotide binding protein MIP1 90.09
KOG2025892 consensus Chromosome condensation complex Condensi 90.07
KOG04131529 consensus Uncharacterized conserved protein relate 90.03
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 89.06
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 88.77
KOG2956516 consensus CLIP-associating protein [General functi 88.58
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 88.24
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 88.17
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 88.03
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 88.01
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 87.86
KOG0567289 consensus HEAT repeat-containing protein [General 87.8
PF13251182 DUF4042: Domain of unknown function (DUF4042) 87.43
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 87.13
KOG4413524 consensus 26S proteasome regulatory complex, subun 87.13
KOG1222791 consensus Kinesin associated protein KAP [Intracel 86.61
smart00638574 LPD_N Lipoprotein N-terminal Domain. 86.59
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 86.45
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 86.14
KOG2062929 consensus 26S proteasome regulatory complex, subun 84.44
KOG2025892 consensus Chromosome condensation complex Condensi 84.22
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 84.12
COG5116926 RPN2 26S proteasome regulatory complex component [ 84.0
COG1470513 Predicted membrane protein [Function unknown] 83.43
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 83.13
cd06561197 AlkD_like A new structural DNA glycosylase. This d 83.02
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 82.53
KOG2062929 consensus 26S proteasome regulatory complex, subun 82.39
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 81.97
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 81.46
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 80.63
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-107  Score=882.93  Aligned_cols=811  Identities=18%  Similarity=0.258  Sum_probs=644.9

Q ss_pred             CCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 002996            3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL   82 (860)
Q Consensus         3 ~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l   82 (860)
                      +|+|+.|++++.+++++|+.|++|.+|||+++.+.++++|++-|++|+++|||.+.||...+|||.++++|+..||++.+
T Consensus        68 lg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~  147 (938)
T KOG1077|consen   68 LGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF  147 (938)
T ss_pred             hcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcC--CChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCCchhccH
Q 002996           83 CDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS  160 (860)
Q Consensus        83 ~~~v~~~l~d--~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~~~~~~~  160 (860)
                      .++|.|+|.+  +.+||||+||+|++++|+..||++...+|.+++..||+|++.+|+.++..++.-|.+..++.+-.-..
T Consensus       148 ~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~  227 (938)
T KOG1077|consen  148 ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP  227 (938)
T ss_pred             hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence            9999999986  78999999999999999999999998899999999999999999999999999999887654333333


Q ss_pred             HHHHHHHHHhc-------------cCChhHHHHHHHHHHhcccc-CHHHHHH---HHHHHhhhhc---------CCChHH
Q 002996          161 HTLSKLLTALN-------------ECTEWGQVFILDALSRYKAA-DAREAEN---IVERVTPRLQ---------HANCAV  214 (860)
Q Consensus       161 ~~~~~Ll~~l~-------------~~~~w~q~~il~~L~~~~~~-~~~~~~~---ll~~v~~~l~---------~~n~aV  214 (860)
                      ..+.+|.....             -++||+|++++|+|+.|.+. |+.....   +++.+....+         |+|+  
T Consensus       228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na--  305 (938)
T KOG1077|consen  228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNA--  305 (938)
T ss_pred             HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhh--
Confidence            44455544331             25899999999999999644 3333333   3344433332         3333  


Q ss_pred             HHHHHHHHHhhhccChHHHHHHHHHhhhHHHhhcC-CChhHHHHHHHHHHHHHhhCh--hhhhccce-EEEecc-CCcHH
Q 002996          215 VLSAMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY-NDPIY  289 (860)
Q Consensus       215 v~~a~~~~~l~~~~~~~~~~~~~~~~~~~L~~lls-~~~niry~aL~~l~~l~~~~p--~~~~~~~~-~~~~l~-~d~~~  289 (860)
                       -+|++|++++.+.+.+...+++.+++..|+.||+ +++|+||++|+++.+++...+  +.++.|.. +|..+. +.|.|
T Consensus       306 -~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvS  384 (938)
T KOG1077|consen  306 -KNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVS  384 (938)
T ss_pred             -HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchH
Confidence             3334444455555555556788889999999995 899999999999999998765  45777866 666666 78899


Q ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002996          290 VKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIV  369 (860)
Q Consensus       290 Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~  369 (860)
                      ||++++|+||.||+.+|++.||.||+.|+..+|..++++++.+++.+|+||+++.+||||++++|++.+|+|+.+|+|.+
T Consensus       385 irrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~R  464 (938)
T KOG1077|consen  385 IRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYR  464 (938)
T ss_pred             HHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcccHHHHHHHHHHhhccCCchHH-HHHHHHHHhhcccccCC-----HHHHHHHHHhhCCCCcHHHHHHHHHH
Q 002996          370 IKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQLLTA  443 (860)
Q Consensus       370 l~~i~~~~p~~~~~~i~~L~~~l~~~~~~~~-~~~~~wilGEy~~~i~~-----~~~~l~~~~~~~~~e~~~v~~~iLta  443 (860)
                      +++|+.+++++|.++.+++++++....-.+. ..+..||+||||++|.+     +...+..+.++|+.+++.+|+.+||+
T Consensus       465 vvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtT  544 (938)
T KOG1077|consen  465 VVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTT  544 (938)
T ss_pred             hheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHH
Confidence            9999999999999999999999964322222 24567999999999975     67889999999999999999999999


Q ss_pred             HHHHhhcCCCCChHHHHHHHHHhcccCCCChHHHHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHHHHHHHh
Q 002996          444 TVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLAN  523 (860)
Q Consensus       444 ~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~evrdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~  523 (860)
                      .+|++..+|+  .+..|+++|+.. .+..|+|+||||+||+.|.+.....+.++|+++||||.++.    +.++.+|.+.
T Consensus       545 yiKl~nl~PE--i~~~v~~vFq~~-~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~----ssll~kl~~~  617 (938)
T KOG1077|consen  545 YIKLINLFPE--IKSNVQKVFQLY-SNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERE----SSLLKKLKKK  617 (938)
T ss_pred             HHHHHhhChh--hhHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCcccc----chHHHHhhcc
Confidence            9999999997  799999999985 46799999999999999998765567888999999998876    6788886542


Q ss_pred             cCcccccccCCchhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CCCCC-CCCCC
Q 002996          524 IATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPY--AATR-QPAPP-PAAPV  599 (860)
Q Consensus       524 ~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~  599 (860)
                               ||+..-.+..+...                 ...+.. ++.++|.++..+..+  .+.. -|+.| |..+.
T Consensus       618 ---------~~~~~~l~~~~~~~-----------------~~~~~~-~~~~~~tp~~v~~~s~st~~~~v~~~p~~n~t~  670 (938)
T KOG1077|consen  618 ---------KPSAISLRAGAGPK-----------------TLANPP-PVASEPTPSKVSKRSNSTDPLSVPSPPPPNNTI  670 (938)
T ss_pred             ---------CCchhccccccCCc-----------------ccCCCC-cccCCCCcccccCCCCCCCcccCCCCCCCCCCc
Confidence                     33222111111000                 000000 000111111111000  0000 01111 11111


Q ss_pred             -CC----CCCCcccccccCCCCCCcccCCCCCCCCC--CCccccccCCCCCCeEEEEEEEeeCCeeEEEEEEEecCCCCc
Q 002996          600 -SP----PVPDLLGDLIGLDNSAAIVPADQAAASPV--PALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPL  672 (860)
Q Consensus       600 -~~----~~~~~~~dl~~~~~~~~~~p~~~~~~~~~--~~~~vl~~~~~~~gl~I~~~~~~~~~~~~l~l~~~N~s~~~l  672 (860)
                       +.    +..+..+|+.|..+.+.+.++|.-++.++  .+.|+++++   ..+||+++.+.+++++++.++|+|++++++
T Consensus       671 ~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed---~~iQIgvk~e~r~~~grl~LfygNkts~~l  747 (938)
T KOG1077|consen  671 SSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFED---SLIQIGVKSETRNNLGRLYLFYGNKTSVPL  747 (938)
T ss_pred             cCCCCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeec---cceeEEEeeeccCcCCeEEEEecccccccc
Confidence             11    11122233333333334455665555554  468899988   679999999999999999999999999999


Q ss_pred             cceeeeeccC---ccCcccCCCCCCCccCCCCeeeEEEeeeecCCCCCCCCCcceEEEEecCCCCeEEEEeccc--cccc
Q 002996          673 DGFMIQFNKN---TFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKIS--LHVL  747 (860)
Q Consensus       673 t~f~v~i~~n---~~gl~~~~~~~~~~l~pg~~~~~~v~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~P--l~~~  747 (860)
                      ++|+.++-++   .+.+..+..+..++|+||.|+++.+.+.|.+++.++| ++.+.|.++|..+ .+.-.+++|  ++.+
T Consensus       748 t~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~p-il~isfk~g~ti~-~~ta~l~lp~~iskf  825 (938)
T KOG1077|consen  748 TSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPP-ILAISFKFGGTIN-LKTAILKLPVLISKF  825 (938)
T ss_pred             cccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCC-eEEEEEEeCCchh-hhhhceechhhHhhh
Confidence            9999988753   2345444445667999999999999999999888854 7788888886544 455458888  5556


Q ss_pred             cccCCCCChHHHHHHhccCCCC-ccceeecCCCccCCHHHHHHHHHhcCceeeeeccCCCCceEEEEEEec---CCccEE
Q 002996          748 FTEDGRMERGSFLETWRSLPDS-NEVLKDLPGVVVSNVEATLDLLAASNMFFIAKRKNANQDVFYFSAKIP---PGVPFL  823 (860)
Q Consensus       748 ~~~~~~~~~~~F~~~W~~l~~~-~E~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~~~---~~~~~L  823 (860)
                      | +|..|+.++|+.||+++++. +|.++.++...+.+...+.+++.++|..++. .+||++++++.+|-+-   .++|||
T Consensus       826 ~-~Pt~l~s~~Ff~rWk~ls~~~~~~q~~fk~~rpld~~~l~~~l~gf~~~l~~-~VDpnp~nlv~agii~t~tq~vgCL  903 (938)
T KOG1077|consen  826 F-QPTELTSEDFFSRWKQLSGPQQEAQEVFKANRPLDAPSLENKLLGFGQTLLD-NVDPNPSNLVGAGIIHTKSQNVGCL  903 (938)
T ss_pred             c-CcccccHHHHHHHHHhcccchhHHHHHHhcCCccccHHHHHHHhhhhHHHhc-cCCCCccceEEEEEEeecceeeeeE
Confidence            6 68999999999999999995 6999999988888888899999999987776 5999998776654442   479999


Q ss_pred             EEEEeecCCCceEEEEecCCCchHHHHHHHHHHH
Q 002996          824 IELTTVIGNPGVKCAIKTPNPDIASLFFEAIETL  857 (860)
Q Consensus       824 v~l~~~~~~~~~~ltvrs~~~~v~~~l~~~i~~~  857 (860)
                      +|++++.++..+|+++|++++.++..++++++..
T Consensus       904 ~RiEpn~~~~~~rltvrss~~tlak~l~e~l~nq  937 (938)
T KOG1077|consen  904 LRIEPNAQAQMYRLTVRTSKPTLAKELVELLKNQ  937 (938)
T ss_pred             EEeccCCcceEEEEEEecCCchHHHHHHHHHhhc
Confidence            9999998888899999999999999999998764

>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query860
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 0.0
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 0.0
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 0.0
2iv9_A238 B2-Appendage From Ap2 In Complex With Eps15 Peptide 1e-27
1e42_A258 Beta2-Adaptin Appendage Domain, From Clathrin Adapt 2e-27
3h1z_A260 Molecular Basis For The Association Of Pipkigamma - 2e-27
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 5e-05
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 3e-04
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 5e-04
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure 
Iteration: 1

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/543 (69%), Positives = 450/543 (82%), Gaps = 5/543 (0%)
Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVS+LF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVNTFVKD +DPNP
Sbjct: 41  MTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNP 100
Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 121 FLESLKDLISDXX-XXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL++LKDLISD                     S  + ++ + +++KLLTALNECTEW Q+
Sbjct: 161 FLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQI 220
Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAM--ILQQMELITST-DVVRNL 236
           FILD L  Y   D REA++I ERVTPRL HAN AVVLSA+  +++ ME+++   D    L
Sbjct: 221 FILDCLGNYMPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATL 280
Query: 237 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 296
            KK+APPLVTLLSAEPE QYV LRNINLIVQ+RP IL HE+KVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLD 340
Query: 297 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 356
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400
Query: 357 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 416
            KVNYVVQEAI+VIKDIFR+YPN YES+IATLCE+LD+ DEPEA+A+MIWI+GEYAER D
Sbjct: 401 TKVNYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSD 460
Query: 417 NADXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 476
           NAD               QVQLQLLTA VKLFLKKPTE  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLDGFHDESTQVQLQLLTAIVKLFLKKPTET-QELVQQVLSLATQDSDNPDL 519
Query: 477 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 536
           RDR YIYWRLLSTDP AAK+VVLAEKP+IS++++ ++P+LLDEL+  I TL+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPN 579
Query: 537 AFV 539
           AFV
Sbjct: 580 AFV 582
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|2IV9|A Chain A, B2-Appendage From Ap2 In Complex With Eps15 Peptide Length = 238 Back     alignment and structure
>pdb|1E42|A Chain A, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor Ap2 Length = 258 Back     alignment and structure
>pdb|3H1Z|A Chain A, Molecular Basis For The Association Of Pipkigamma -P90 With The Clathrin Adaptor Ap-2 Length = 260 Back     alignment and structure
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query860
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 0.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-162
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-161
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 5e-75
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 1e-63
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 2e-16
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-11
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-11
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 6e-11
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 9e-10
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-10
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-09
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 5e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-09
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 5e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-05
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 4e-04
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 6e-06
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 7e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 6e-04
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 6e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  706 bits (1823), Expect = 0.0
 Identities = 400/543 (73%), Positives = 480/543 (88%), Gaps = 5/543 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVN+FVKD +DPNP
Sbjct: 41  MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160

Query: 121 FLESLKDLISDNNPMVVANAVAALAEI-EENSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL+SL+DLI+D+NPMVVANAVAAL+EI E + +  + ++    ++KLLTALNECTEWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220

Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAM--ILQQMELI-TSTDVVRNL 236
           FILD LS Y   D REA++I ERVTPRL HAN AVVLSA+  +++ +EL+   +D    L
Sbjct: 221 FILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280

Query: 237 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 296
            KK+APPLVTLLS EPE+QYVALRNINLIVQ+RP IL  EIKVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD 340

Query: 297 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 356
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400

Query: 357 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 416
            KVNYVVQEAI+VI+DIFR+YPN YESIIATLCE+LD+LDEP+A+A+MIWI+GEYAERID
Sbjct: 401 TKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460

Query: 417 NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 476
           NADELLESFLE F +E  QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDL 519

Query: 477 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 536
           RDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPN 579

Query: 537 AFV 539
           AFV
Sbjct: 580 AFV 582
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Length = 258 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query860
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 100.0
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 99.96
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 99.96
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.7
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.61
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 99.61
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 99.59
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.54
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.53
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.52
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.51
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.43
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.41
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.41
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.4
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.39
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.39
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.39
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.36
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.34
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.34
1qgr_A876 Protein (importin beta subunit); transport recepto 99.32
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.32
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.29
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.29
1qgr_A876 Protein (importin beta subunit); transport recepto 99.29
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.24
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.23
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.21
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.18
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.16
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.13
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.11
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.08
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.08
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.07
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.02
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.97
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.95
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.93
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.92
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.87
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.8
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.72
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.71
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.68
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.65
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.62
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.56
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.56
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.45
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.45
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.43
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.34
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.26
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.24
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.21
2x19_B963 Importin-13; nuclear transport, protein transport; 98.2
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.2
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.17
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.17
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.16
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.13
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.13
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.1
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.01
3nmz_A458 APC variant protein; protein-protein complex, arma 97.98
2x1g_F971 Cadmus; transport protein, developmental protein, 97.87
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.83
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.81
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.76
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.71
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.68
2x19_B963 Importin-13; nuclear transport, protein transport; 97.67
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.63
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.61
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.51
3nmz_A458 APC variant protein; protein-protein complex, arma 97.49
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.42
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.41
2x1g_F971 Cadmus; transport protein, developmental protein, 97.38
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.38
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 97.02
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.01
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.0
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.96
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.72
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.69
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.61
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.57
3grl_A651 General vesicular transport factor P115; vesicle t 96.51
3grl_A651 General vesicular transport factor P115; vesicle t 96.46
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 96.37
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 96.24
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 96.09
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.07
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 96.04
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 95.63
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.57
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.2
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.15
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 95.01
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 95.0
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 94.74
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 94.53
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 94.5
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 94.08
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.81
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.66
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 93.19
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 92.66
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 92.33
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 91.08
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 90.72
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 90.71
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 90.08
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 87.22
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 86.78
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 83.69
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 83.08
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 82.67
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 80.24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
Probab=100.00  E-value=1e-85  Score=780.90  Aligned_cols=542  Identities=74%  Similarity=1.169  Sum_probs=507.6

Q ss_pred             CCCCCCcccchHHHhHhccCCCcchHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 002996            1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE   80 (860)
Q Consensus         1 mt~G~d~s~~f~~vi~l~~s~~~~~Krl~Yl~l~~~~~~~~el~~L~in~l~kDl~~~n~~ir~lALr~l~~i~~~e~~~   80 (860)
                      |++|+|++++|++++++++++|+++||+||+|++.+++.+||++++++|+|+|||+|+||.+|++||++||+++.+++.+
T Consensus        41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~  120 (591)
T 2vgl_B           41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE  120 (591)
T ss_dssp             HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred             HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCChHHHHHHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHhhcCCCC-chhcc
Q 002996           81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT  159 (860)
Q Consensus        81 ~l~~~v~~~l~d~~~~VRk~A~~~l~kl~~~~p~~~~~~~~~~~l~~lL~D~d~~V~~~al~~l~~i~~~~~~~-~~~~~  159 (860)
                      ++.++|++++.|++|||||+|+.|+.++++.+|+.+++.+|++.+.++|+|+|++|+.+|+.+|.+|++.++.. .+.+.
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~  200 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN  200 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence            99999999999999999999999999999999999987679999999999999999999999999999887655 57777


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHHhccccCHHHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhh-hc-cChHHHHHH
Q 002996          160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA-MILQQME-LI-TSTDVVRNL  236 (860)
Q Consensus       160 ~~~~~~Ll~~l~~~~~w~q~~il~~L~~~~~~~~~~~~~ll~~v~~~l~~~n~aVv~~a-~~~~~l~-~~-~~~~~~~~~  236 (860)
                      +..+.+|++.+.+++||+|++++++|+.|.+.++++...+++.+.++++|.|++|+++| .++..+. .+ .+++..+.+
T Consensus       201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~  280 (591)
T 2vgl_B          201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML  280 (591)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence            88899999999999999999999999999999988999999999999999999999999 2333332 12 235566666


Q ss_pred             HHHhhhHHHhhcCCChhHHHHHHHHHHHHHhhChhhhhccceEEEeccCCcHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 002996          237 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE  316 (860)
Q Consensus       237 ~~~~~~~L~~lls~~~niry~aL~~l~~l~~~~p~~~~~~~~~~~~l~~d~~~Ik~~~L~lL~~l~~~~Nv~~Iv~eL~~  316 (860)
                      ..++.++|+.++++++|+||++|++|..++..+|+.+.+|++.|+|+.+||.+||++|+++|+.+++++|++.|++||.+
T Consensus       281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~  360 (591)
T 2vgl_B          281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE  360 (591)
T ss_dssp             HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence            77788888888889999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHhhccCC
Q 002996          317 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD  396 (860)
Q Consensus       317 y~~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~~i~~L~~~l~~~~  396 (860)
                      |+.+.|.+|+++++++|+.||.+|++...||+++|+++++..++++.+++|.+++++++++|+.+++++..|++.++++.
T Consensus       361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~  440 (591)
T 2vgl_B          361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD  440 (591)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             chHHHHHHHHHHhhcccccCCHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcccCCCChHH
Q 002996          397 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL  476 (860)
Q Consensus       397 ~~~~~~~~~wilGEy~~~i~~~~~~l~~~~~~~~~e~~~v~~~iLta~~Kl~~~~p~~~~~~~i~~~l~~~~~~s~~~ev  476 (860)
                      +|+++++++|++||||+.+.+++++++.++++|.++++.||+++|+|++|++.++|++ .++.++++|+.+..++.|+||
T Consensus       441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev  519 (591)
T 2vgl_B          441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL  519 (591)
T ss_dssp             SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred             CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence            9999999999999999999999999999999999999999999999999999999976 568999999998777899999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHhhhcCCCCCCCCcccCChHHHHHHHHhcCcccccccCCchhhhcccc
Q 002996          477 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVK  543 (860)
Q Consensus       477 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~~~~~~~~vy~~~~~~~~~~~~  543 (860)
                      ||||++||+||+.+++.++++|+++||+++.+++..+++++++++.++||+|++|+||++.|+++.+
T Consensus       520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~  586 (591)
T 2vgl_B          520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSH  586 (591)
T ss_dssp             HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC----
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCcc
Confidence            9999999999998888999999999999999888899999999999999999999999999987543
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 860
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-172
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-119
d1e42a2113 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-termina 7e-46
d1e42a1120 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, 2e-44
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-14
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 7e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 5e-08
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 4e-07
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 5e-06
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 5e-07
d1te4a_111 a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium 2e-06
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 6e-06
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 0.001
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.002
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query860
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 99.86
d1e42a2113 Beta2-adaptin AP2, C-terminal subdomain {Human (Ho 99.81
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 99.73
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.67
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.48
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.39
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 99.23
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.2
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.16
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.06
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.04
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.03
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.96
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.9
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.86
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.85
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.81
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 98.81
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.76
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.71
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.71
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.66
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.51
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.48
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.47
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.14
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.13
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.09
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.82
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.64
d1r4xa1163 Coatomer gamma subunit C-terminal domain, first su 97.6
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.45
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.03
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.52
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.76
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 95.7
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 95.66
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 95.58
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 95.02
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 86.76
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 83.41
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure