Citrus Sinensis ID: 003005
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.798 | 0.904 | 0.328 | 3e-85 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.782 | 0.865 | 0.322 | 2e-83 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.747 | 0.876 | 0.306 | 8e-69 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.733 | 0.839 | 0.302 | 4e-63 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.533 | 0.568 | 0.251 | 2e-19 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.266 | 0.120 | 0.282 | 4e-07 | |
| P72186 | 1398 | Pyrolysin OS=Pyrococcus f | no | no | 0.125 | 0.077 | 0.35 | 6e-07 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.268 | 0.120 | 0.272 | 9e-07 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.268 | 0.117 | 0.272 | 1e-06 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.319 | 0.144 | 0.256 | 2e-06 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 317 bits (812), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 252/766 (32%), Positives = 398/766 (51%), Gaps = 81/766 (10%)
Query: 102 SRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTA 161
S +DS LR + L Y+Y I+GFS +T ++A+ L + V +V+ +
Sbjct: 49 SNWYDSSLRSISDSAELL--YTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELH 106
Query: 162 TTHTPQFLGLPQGA---WIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPS 218
TT TP FLGL + + + G Y VV+G +DTG+ P S++D E P+PS
Sbjct: 107 TTRTPLFLGLDEHTADLFPEAGSYSD----VVVGVLDTGVWPESKSYSD---EGFGPIPS 159
Query: 219 HFSGICEVTRDFPSGSCNRKLIGARHFAAS-AITRGIFNSSQDYASPFDGDGHGSHTASV 277
+ G CE +F + CNRKLIGAR FA T G + S++ SP D DGHG+HT+S
Sbjct: 160 SWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSST 219
Query: 278 AAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDII 337
AAG+ + G+ G A GMAPR+ +AVYK + G F++D++AAID+A D V+++
Sbjct: 220 AAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLG-GCFSSDILAAIDKAIADNVNVL 278
Query: 338 SLSITPNRRPPGIATFF-NPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396
S+S+ G++ ++ + + + +A + GI V +AGN GPS S+S+ +PWI TVG
Sbjct: 279 SMSLGG-----GMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVG 333
Query: 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDS 456
A + DR + ILGN +GV L G L+ ++A N + T ++ C +
Sbjct: 334 AGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNL----CM-T 388
Query: 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTP 516
+ V+G +++C G++ Q + K G++ + G +L
Sbjct: 389 GTLIPEKVKGKIVMCDR------GINARVQKGDVVKAAGGVGMIL-ANTAANGEELVADA 441
Query: 517 MKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576
+P + + + ++++Y ++ T I G V G+K +P +
Sbjct: 442 HLLPATTV--GEKAGDIIRHYVTT--DPNPTASISILGTVV----GVKP-----SPVVAA 488
Query: 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAW------SSLGTDSVEFQGESFAMMSG 630
+S+RGP+ +I+KP+L+APG +I AAW + L +DS + F ++SG
Sbjct: 489 FSSRGPNSI-----TPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVE---FNIISG 540
Query: 631 TSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSP 690
TSM+ PH++GLAAL+K P +SP+AI SAL T+A K+G P++ A K P
Sbjct: 541 TSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLL-DIATGK------P 593
Query: 691 ATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVV-----LNYTGQNCWAY 745
+TPFD G+G V+ T + +PGL++D + DY+ FLC +N +SP + NYT +Y
Sbjct: 594 STPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSY 653
Query: 746 NSTISGADLNLPSITI-ARLNQSRTVQRTLTNIAGNETYSVG-WSAPYGVSMKVSPTHFS 803
S ADLN PS + + RT+T++ G TYSV S GV + V P +
Sbjct: 654 ----SVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLN 709
Query: 804 I-ASGEKQVLNVFFNATTSGTAA--SFGRIGLFGNQGHIVNIPLSV 846
+ EK+ V F +S + SFG I + + H+V P+++
Sbjct: 710 FKEANEKKSYTVTFTVDSSKPSGSNSFGSI-EWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 248/770 (32%), Positives = 378/770 (49%), Gaps = 99/770 (12%)
Query: 121 LYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLP----QGAW 176
LYSY I GF+ +T +AE L EV V D ++ TT++ +FLGL G W
Sbjct: 72 LYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVW 131
Query: 177 IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236
+ G+G +IG +DTG+ P PSF DD S +P + GIC+ F S SCN
Sbjct: 132 SKS----RFGQGTIIGVLDTGVWPESPSF-DDTGMPS--IPRKWKGICQEGESFSSSSCN 184
Query: 237 RKLIGARHFAASAITRG--IFNSSQD-------YASPFDGDGHGSHTASVAAGNHGIPVV 287
RKLIGAR F RG + NS ++ Y S D GHG+HTAS G+
Sbjct: 185 RKLIGARFF-----IRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMAN 239
Query: 288 VTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT--PNR 345
V G+ G A GMAP +HIAVYK + + G +++D++AAID A QD VD++SLS+ P
Sbjct: 240 VLGNGAGVARGMAPGAHIAVYKVCWFN-GCYSSDILAAIDVAIQDKVDVLSLSLGGFP-- 296
Query: 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYT 405
I + + I + A + GI V+ AAGN GP S+++ +PW+ T+GA + DR +
Sbjct: 297 ----IPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFP 352
Query: 406 NSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFN----- 460
+ L N + G L PG + N + +YV S F
Sbjct: 353 AVVRLANGKLLYGESLYPG-----------KGIKNAGREVEVIYVTGGDKGSEFCLRGSL 401
Query: 461 -QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKM 519
++ ++G ++IC R V G S +A + A G+ + I + + + +
Sbjct: 402 PREEIRGKMVICD---RGVNGRSEKGEAVK-----EAGGVAMILANTEINQEEDSIDVHL 453
Query: 520 PGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579
+ +S +L Y N++++ K I FG ++G + AP++ +SA
Sbjct: 454 LPATLIGYTESVLLKAYVNATVK----PKARIIFGGT--VIG------RSRAPEVAQFSA 501
Query: 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAW-SSLGTDSVEFQGE--SFAMMSGTSMAAP 636
RGP L + I+KP+++APG +I AAW +LG + + +F +MSGTSM+ P
Sbjct: 502 RGPS-----LANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCP 556
Query: 637 HIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDM 696
H++G+ ALI+ +P++SP+AI SAL T+A LYD+ G I + PA F +
Sbjct: 557 HVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAI---------KDGNKPAGVFAI 607
Query: 697 GSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQN--CWAYNSTISGADL 754
G+G VN +++PGLV++ DY+++LC + + +L T +N C G L
Sbjct: 608 GAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRKNPGFSL 667
Query: 755 NLPSITI--ARLNQSRTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEK-- 809
N PSI + R + + R +TN+ N YSV AP G+ + V+P ++
Sbjct: 668 NYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTL 727
Query: 810 --QVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARLSYNATTN 857
+V V G ASF + L H N+ V + +S TN
Sbjct: 728 SYRVWFVLKKKNRGGKVASFAQGQLTWVNSH--NLMQRVRSPISVTLKTN 775
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 229/747 (30%), Positives = 351/747 (46%), Gaps = 106/747 (14%)
Query: 121 LYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEG 180
L++Y NGF+V +T ++AEK++ V +V + TT + FLG P +
Sbjct: 70 LHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFP----LTVP 125
Query: 181 GYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLI 240
+V+G +DTGI P PSF D E P P + G CE + +F CNRK+I
Sbjct: 126 RRSQVESNIVVGVLDTGIWPESPSFDD---EGFSPPPPKWKGTCETSNNF---RCNRKII 179
Query: 241 GARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMA 300
GAR + I R I S D P D +GHG+HTAS AAG + G G A G
Sbjct: 180 GARSYH---IGRPI--SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGV 234
Query: 301 PRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT-PNRRPPGIATFFNPIDM 359
P + IA YK + G D++AA D A DGVDIISLS+ N R F + I +
Sbjct: 235 PLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGANPR----HYFVDAIAI 289
Query: 360 ALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419
A + GI +AGN GP+ + +S SPW+ +V A++ DR + + +GN + GV
Sbjct: 290 GSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGV 349
Query: 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVL 479
+ ++ Y L+S N + + C D S N +L++G +++C S
Sbjct: 350 SINTFDNQYYPLVSGRDIPNTGFDKSTSRF---CTDKS-VNPNLLKGKIVVCEASF---- 401
Query: 480 GLSTIKQAFETAKNLS-AAGIVF------YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKI 532
E K+L AAG++ Y D + P P + P+D
Sbjct: 402 ------GPHEFFKSLDGAAGVLMTSNTRDYADSY-------PLPSS-----VLDPNDLLA 443
Query: 533 LLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDA 592
L+Y I + + + SAP ++ +S+RGP+
Sbjct: 444 TLRY-------------IYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATK----- 485
Query: 593 DIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSF 652
D++KP++ PG I AAW S+ + F ++SGTSM+ PHI G+A +K P++
Sbjct: 486 DVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTW 545
Query: 653 SPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLV 712
SP+AI SAL T+A+ P+ A+ +P F GSG VN ++ PGLV
Sbjct: 546 SPAAIKSALMTTAS-------PMNARF---------NPQAEFAYGSGHVNPLKAVRPGLV 589
Query: 713 FDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGA-----DLNLPSITIARLNQS 767
+DA+ +DY+ FLCG ++ V TG Y++ SG DLN PS ++ ++ S
Sbjct: 590 YDANESDYVKFLCGQGYNTQAVRRITGD----YSACTSGNTGRVWDLNYPSFGLS-VSPS 644
Query: 768 RT----VQRTLTNIAGN-ETYSVGWSAPYGVSMKVSPTHFSIAS-GEKQVLNVFFNATTS 821
+T RTLT++A TY SAP G+++ V+P S G+++ + +
Sbjct: 645 QTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIK 704
Query: 822 GTAASFGRIGLFGNQGHIVNIPLSVVA 848
G S + + + H V P+++ +
Sbjct: 705 GFVVSASLV--WSDGVHYVRSPITITS 729
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 217/718 (30%), Positives = 338/718 (47%), Gaps = 89/718 (12%)
Query: 117 KYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAW 176
K K+YSY N F+ ++P +A+K+ EV +V + + TT + F+GLP
Sbjct: 71 KERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLP---- 126
Query: 177 IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSY-PVPSHFSGICEVTRDFPSGSC 235
+ + A V+IG +DTGI P SF D H P P+ + G C ++F C
Sbjct: 127 LTAKRHLKAERDVIIGVLDTGITPDSESFLD----HGLGPPPAKWKGSCGPYKNFTG--C 180
Query: 236 NRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGN 295
N K+IGA++F + + SP D DGHG+HT+S AG + G G
Sbjct: 181 NNKIIGAKYFKHDGNV-----PAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGT 235
Query: 296 ASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFF- 354
A G P + +A+YK + G D++A + A DGV+IIS+SI IA +
Sbjct: 236 ARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGP-----IADYSS 290
Query: 355 NPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414
+ I + A + GI V +AGN GPS ++++ PWI TV A+ DR + + I LGN
Sbjct: 291 DSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGK 350
Query: 415 TISGVGLAPGTDKM--YTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472
+ SG+G++ + K Y L+S + A N TDD Y+ S + ++ V+G +++C
Sbjct: 351 SFSGMGISMFSPKAKSYPLVSGVDAAKN----TDDKYLARYCFSDSLDRKKVKGKVMVCR 406
Query: 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKI 532
+G ++ T K+ AG + D ++ Q+ P + S D I
Sbjct: 407 ------MGGGGVES---TIKSYGGAGAIIVSDQYLDNAQIFMAPATS---VNSSVGD--I 452
Query: 533 LLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDA 592
+ +Y NS+ V +K + AP + +S+RGP+P L
Sbjct: 453 IYRYINSTRSASAVIQKT--------------RQVTIPAPFVASFSSRGPNPGSIRL--- 495
Query: 593 DIMKPNLVAPGNSIWAAWS---SLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF 649
+KP++ APG I AA++ SL + Q F ++SGTSMA PH+AG+AA +K
Sbjct: 496 --LKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFH 553
Query: 650 PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709
P ++P+AI SA+ TSA PI R K E F G G +N + P
Sbjct: 554 PDWTPAAIKSAIITSAK-------PI--SRRVNKDAE-------FAYGGGQINPRRAASP 597
Query: 710 GLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGA---DLNLPSITI----A 762
GLV+D Y+ FLCG ++ + G + +S + G LN P+I + A
Sbjct: 598 GLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSA 657
Query: 763 RLNQSRTVQRTLTNIA-GNETYSVGWSAPYGVSMKVSPTHFSIA-SGEKQVLNVFFNA 818
+ + +R +TN+ + Y+ AP GV + V P S + + +K+ V A
Sbjct: 658 KTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKA 715
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 148/588 (25%), Positives = 241/588 (40%), Gaps = 130/588 (22%)
Query: 111 RAFKGEKYLKL-YSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTH----- 164
+A K K K+ Y + +GFS+ + + KL ++V V + + +T
Sbjct: 92 KAIKAVKNGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVT 151
Query: 165 ------TPQ------FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEH 212
+PQ ++G AW + GY G+G+ + IDTG++ HP + +
Sbjct: 152 ISEDAVSPQMDDSAPYIG-ANDAW--DLGY--TGKGIKVAIIDTGVEYNHPDLKKNFGQ- 205
Query: 213 SYPVPSHFSGICEVTRDF-----PSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267
+ G V D+ P+G RG +
Sbjct: 206 -------YKGYDFVDNDYDPKETPTGDP----------------RG------------EA 230
Query: 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327
HG+H A A N G G+AP + + Y+ L G +V+A ++
Sbjct: 231 TDHGTHVAGTVAAN------------GTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVE 278
Query: 328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS 387
+A QDG D+++LS+ + P AT AL A G+ V + GN+GP+ ++ S
Sbjct: 279 RAVQDGADVMNLSLGNSLNNPDWAT-----STALDWAMSEGVVAVTSNGNSGPNGWTVGS 333
Query: 388 --FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
S +VGA + + ++ G+ + +G Y + ALNN
Sbjct: 334 PGTSREAISVGA-TQLPLNEYAVTFGSYSSAKVMG--------YNKEDDVKALNNKEVEL 384
Query: 446 DDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505
+ +GE +D +DL ++ SI FV + AK A G+V Y +
Sbjct: 385 VEAGIGEAKDFEG--KDLTGKVAVVKRGSIAFV-------DKADNAKKAGAIGMVVYNN- 434
Query: 506 FVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKA 565
+ N M +P I + D K++ S+L+ E TK K V+ LG A
Sbjct: 435 LSGEIEANVPGMSVPTIKLSLEDGEKLV-----SALKAGE-TKTTFKL-TVSKALGEQVA 487
Query: 566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESF 625
+FS +RGP + D ++KP++ APG +I + + D +
Sbjct: 488 DFS----------SRGP------VMDTWMIKPDISAPGVNIVSTIPTHDPD----HPYGY 527
Query: 626 AMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA-LSTSATLYDKNG 672
GTSMA+PHIAG A+IKQ P +S I +A ++T+ TL D +G
Sbjct: 528 GSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDG 575
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Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 119/269 (44%), Gaps = 40/269 (14%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDASEH--SYPVPSHFSGICEVTRDFPSGSCN 236
Y+ GEG V+ IDTGIDPTH +DD Y V F+ + R F S
Sbjct: 203 NYKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDV-EKFTDTAKHGRYFTS---- 257
Query: 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHH-FGN 295
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 -KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPTKS 301
Query: 296 ASGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIAT 352
G+AP + + K S +A +V+AI+ +A+ G D++++S+ + G T
Sbjct: 302 VVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDS---GNQT 358
Query: 353 FFNPIDMALLSAAKAGIFVVQAAGNTGPS 381
+P A+ +A ++G V +AGN+G S
Sbjct: 359 LEDPEIAAVQNANESGTAAVISAGNSGTS 387
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P72186|PLS_PYRFU Pyrolysin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pls PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 32/140 (22%)
Query: 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632
+I ++S+RGP D +I KPN+VAPG I+ SSL + G F MSGTS
Sbjct: 546 RIAFFSSRGPRI------DGEI-KPNVVAPGYGIY---SSL---PMWIGGADF--MSGTS 590
Query: 633 MAAPHIAGLAALI----KQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQ 688
MA PH++G+ AL+ K + ++P I L + AT + G P Q+
Sbjct: 591 MATPHVSGVVALLISGAKAEGIYYNPDIIKKVLESGATWLE--GDPYTGQK--------- 639
Query: 689 SPATPFDMGSGFVNATASLD 708
T D G G VN T S +
Sbjct: 640 --YTELDQGHGLVNVTKSWE 657
|
Has endopeptidase activity toward caseins, casein fragments including alpha-S1-casein and synthetic peptides. Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDAS-EHSYPVPSHFSGICEVTRDFPSGSCNR 237
Y+ GEG V+ ID+GIDPTH +DD + + F+ + R F N
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYF-----NS 257
Query: 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA- 296
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPAKSV 302
Query: 297 SGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATF 353
G+AP + + K S +A +V+AI+ +A+ G D++++S+ + G T
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDS---GNQTL 359
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPS 381
+P A+ +A ++G V +AGN+G S
Sbjct: 360 EDPELAAVQNANESGTAAVISAGNSGTS 387
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDAS-EHSYPVPSHFSGICEVTRDFPSGSCNR 237
Y+ GEG V+ ID+GIDPTH +DD + + F+ + R F N
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYF-----NS 257
Query: 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA- 296
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPAKSV 302
Query: 297 SGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATF 353
G+AP + + K S +A +V+AI+ +A+ G D++++S+ + G T
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDS---GNQTL 359
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPS 381
+P A+ +A ++G V +AGN+G S
Sbjct: 360 EDPELAAVQNANESGTAAVISAGNSGTS 387
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 141/327 (43%), Gaps = 53/327 (16%)
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANV--VSDFSVRTATTHTPQFLGLPQGAWIQEG 180
SY Y++NGFS V KL +++A V V+ V T + Q W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKL---KQIAGVKTVTLAKVYYPTDAKANSMANVQAVW---S 202
Query: 181 GYETAGEGVVIGFIDTGIDPTHPS--FADDAS-EHSYPVPSHFSGICEVTRDFPSGSCNR 237
Y+ GEG V+ ID+GIDPTH +DD + + F+ + R F N
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYF-----NS 257
Query: 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA- 296
K+ ++A + T I + + D + HG H A + N TG +
Sbjct: 258 KVPYGFNYADNNDT--ITDDTVD-------EQHGMHVAGIIGANG------TGDDPAKSV 302
Query: 297 SGMAPRSHIAVYKALYKSFGGF---AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATF 353
G+AP + + K S ++ +V+AI+ +A+ G D++++S+ + G T
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDS---GNQTL 359
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIF------TVGAASHDRIYT-- 405
+P A+ +A ++G V +AGN+G S + + + VG R T
Sbjct: 360 EDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTV 419
Query: 406 ----NSIILGNSLTI---SGVGLAPGT 425
N+ ++ ++TI +G+ L PGT
Sbjct: 420 ASAENTDVITQAVTITDGTGLQLGPGT 446
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| 224115250 | 837 | predicted protein [Populus trichocarpa] | 0.969 | 0.994 | 0.806 | 0.0 | |
| 224117852 | 824 | predicted protein [Populus trichocarpa] | 0.938 | 0.976 | 0.809 | 0.0 | |
| 296089234 | 842 | unnamed protein product [Vitis vinifera] | 0.972 | 0.990 | 0.784 | 0.0 | |
| 449490755 | 842 | PREDICTED: LOW QUALITY PROTEIN: subtilis | 0.942 | 0.960 | 0.781 | 0.0 | |
| 449434210 | 859 | PREDICTED: subtilisin-like protease SDD1 | 0.926 | 0.925 | 0.784 | 0.0 | |
| 359483988 | 818 | PREDICTED: subtilisin-like protease [Vit | 0.944 | 0.990 | 0.759 | 0.0 | |
| 356511041 | 824 | PREDICTED: subtilisin-like protease-like | 0.941 | 0.980 | 0.767 | 0.0 | |
| 356558532 | 864 | PREDICTED: subtilisin-like protease SDD1 | 0.947 | 0.940 | 0.736 | 0.0 | |
| 356528418 | 824 | PREDICTED: subtilisin-like protease-like | 0.941 | 0.980 | 0.768 | 0.0 | |
| 356530513 | 825 | PREDICTED: subtilisin-like protease SDD1 | 0.937 | 0.974 | 0.747 | 0.0 |
| >gi|224115250|ref|XP_002332198.1| predicted protein [Populus trichocarpa] gi|222875305|gb|EEF12436.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1398 bits (3619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/846 (80%), Positives = 757/846 (89%), Gaps = 14/846 (1%)
Query: 16 VVLLLGFLVCTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNK--NHGFHK 73
+VL LG L T C+ D SE + TAVYIVTLKQAP+ H + ELR+ HG +
Sbjct: 1 MVLSLGVLAGT-LCQVDDGSE--NGTTAVYIVTLKQAPASHYYG-ELRKNTNVFKHGVPR 56
Query: 74 QNGTSGRLSRLNNPRNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSV 133
S +NPRN S S+ S I+RVHDS+LRR +GEKYLKLYSYHYLINGF+V
Sbjct: 57 NPKQS------HNPRNDSRSNQSSSSYIARVHDSLLRRVLRGEKYLKLYSYHYLINGFAV 110
Query: 134 FVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGF 193
VTP+QA KLSRR+EVANV DFSVRTATTHTPQFLGLPQGAW + GGYETAGEG+VIGF
Sbjct: 111 LVTPEQANKLSRRKEVANVALDFSVRTATTHTPQFLGLPQGAWPKAGGYETAGEGIVIGF 170
Query: 194 IDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG 253
IDTGIDP+HPSF+DD+S +SYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG
Sbjct: 171 IDTGIDPSHPSFSDDSSLNSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRG 230
Query: 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK 313
IFNSSQDYASPFDGDGHG+HTASVAAGNHGIPV+V HHFGNASGMAPR+H+AVYKALYK
Sbjct: 231 IFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVIVARHHFGNASGMAPRAHVAVYKALYK 290
Query: 314 SFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQ 373
SFGGFAADVVAAIDQAAQDGVD++SLSITPNRRPPGIATFFNPIDMALLSA KAGIF VQ
Sbjct: 291 SFGGFAADVVAAIDQAAQDGVDVLSLSITPNRRPPGIATFFNPIDMALLSAVKAGIFAVQ 350
Query: 374 AAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK--MYTL 431
AAGNTGPSPKSMSSFSPWIFTVGAASHDR Y+NSIILGN++TI GVGLAPGT K M TL
Sbjct: 351 AAGNTGPSPKSMSSFSPWIFTVGAASHDRAYSNSIILGNNVTIHGVGLAPGTHKNTMLTL 410
Query: 432 ISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491
ISALHALNN TT DMYVGECQDSSNFNQDLV+GNLLICSYSIRFVLGLSTIKQA TA
Sbjct: 411 ISALHALNNETTVATDMYVGECQDSSNFNQDLVKGNLLICSYSIRFVLGLSTIKQAIATA 470
Query: 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKII 551
KNLSAAG+VFYMDPFVIGFQLNP PM++PGIIIPSPDDSK+LLQYYNSSLER+E TKKI
Sbjct: 471 KNLSAAGVVFYMDPFVIGFQLNPIPMRVPGIIIPSPDDSKVLLQYYNSSLERNETTKKIT 530
Query: 552 KFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWS 611
+FG+VA ILGGLKAN+SNSAPK+M+YSARGPDPED+FLDDADI+KPNL+APGN IWAAWS
Sbjct: 531 RFGSVASILGGLKANYSNSAPKVMFYSARGPDPEDNFLDDADILKPNLIAPGNLIWAAWS 590
Query: 612 SLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKN 671
SLGTDSVEFQGE+FA+MSGTSMAAPHIAGLAALIKQKFPSFSP+AIASALST+A+LYD N
Sbjct: 591 SLGTDSVEFQGENFALMSGTSMAAPHIAGLAALIKQKFPSFSPAAIASALSTTASLYDNN 650
Query: 672 GGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSS 731
GGPIMAQRAY+ PD NQSPATPFDMGSGFVNATA+LDPGL+FD+SY+DYMSFLCGINGSS
Sbjct: 651 GGPIMAQRAYSNPDLNQSPATPFDMGSGFVNATAALDPGLIFDSSYDDYMSFLCGINGSS 710
Query: 732 PVVLNYTGQNCWAYNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPY 791
PVVLNYTGQNC +YNSTI+G DLNLPSITIA+L QS+TVQR++TNIAG ETY VGWSAPY
Sbjct: 711 PVVLNYTGQNCLSYNSTINGTDLNLPSITIAKLYQSKTVQRSVTNIAGGETYKVGWSAPY 770
Query: 792 GVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARLS 851
GV++KV+PT F IASGE+Q L+VFF+A + + AS+GRIGLFG+QGH+VNIPLSV+ +++
Sbjct: 771 GVTIKVAPTRFCIASGERQTLSVFFDAKMNSSTASYGRIGLFGDQGHVVNIPLSVIVKVT 830
Query: 852 YNATTN 857
YN TTN
Sbjct: 831 YNTTTN 836
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117852|ref|XP_002317684.1| predicted protein [Populus trichocarpa] gi|222860749|gb|EEE98296.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1383 bits (3580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/826 (80%), Positives = 741/826 (89%), Gaps = 21/826 (2%)
Query: 29 CRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNK-NHGFHKQNGTSGRLSRLNNP 87
C+ D S D+E TAVYIVTLKQAP+ H + + + N HG P
Sbjct: 16 CQVDDGS--DNETTAVYIVTLKQAPASHYYGKLRKNTNVFKHGV---------------P 58
Query: 88 RNVSISHPRSGYN-ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRR 146
RN + H RS + ++RVHDS+LRR +GEKYLKLYSYHYLINGF+V VTP+QA KLSRR
Sbjct: 59 RNPNQFHNRSSSSYVARVHDSLLRRVLRGEKYLKLYSYHYLINGFAVLVTPEQAFKLSRR 118
Query: 147 REVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFA 206
REVANV DFSVRTATTHTPQFLGLPQGAW++ GGYETAGEG+VIGF+DTGIDPTHPSFA
Sbjct: 119 REVANVALDFSVRTATTHTPQFLGLPQGAWVKAGGYETAGEGIVIGFVDTGIDPTHPSFA 178
Query: 207 DDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFD 266
DD S +SYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSS DYASPFD
Sbjct: 179 DDISLNSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSLDYASPFD 238
Query: 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI 326
GDGHG+HTASVAAGNHGIPV+V GH FGNASGMAPR+H++VYKALYKSFGGFAADVVAAI
Sbjct: 239 GDGHGTHTASVAAGNHGIPVIVAGHCFGNASGMAPRAHVSVYKALYKSFGGFAADVVAAI 298
Query: 327 DQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS 386
DQAAQDGVD++SLSITPNRRPPGIATFFNPIDMALLSA KAGIF+VQAAGNTGPSPKSMS
Sbjct: 299 DQAAQDGVDVLSLSITPNRRPPGIATFFNPIDMALLSAVKAGIFIVQAAGNTGPSPKSMS 358
Query: 387 SFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK--MYTLISALHALNNNTTT 444
SFSPWIFTVGAASHDR+Y+NSIILGN++TI GVGLAPGTD+ M TL+SALHA+NN TT
Sbjct: 359 SFSPWIFTVGAASHDRVYSNSIILGNNVTIHGVGLAPGTDEDTMLTLVSALHAVNNETTV 418
Query: 445 TDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMD 504
T DMYVGECQDSS FNQD ++GNLLICSYSIRFVLGLSTIKQA ETAKNLSAAG+VFYMD
Sbjct: 419 TTDMYVGECQDSSTFNQDFIEGNLLICSYSIRFVLGLSTIKQAVETAKNLSAAGVVFYMD 478
Query: 505 PFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564
PFVIG+QLNP PM +PGIIIPSPDDSK+LLQYYNSSLER+ TK+I KFGAVA ILGGLK
Sbjct: 479 PFVIGYQLNPIPMSVPGIIIPSPDDSKVLLQYYNSSLERNGTTKQITKFGAVASILGGLK 538
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES 624
AN+SNSAPK++YYSARGPDPEDSFLDDADI+KPNLVAPGNSIWAAWSSLGTDSVEFQGE+
Sbjct: 539 ANYSNSAPKVVYYSARGPDPEDSFLDDADILKPNLVAPGNSIWAAWSSLGTDSVEFQGEN 598
Query: 625 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKP 684
FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALS++A+LYD NGGPIMAQRAYA P
Sbjct: 599 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSSTASLYDNNGGPIMAQRAYANP 658
Query: 685 DENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWA 744
D NQSPATPFDMGSGFVNATA+LDPGL+FD+SY+DYMSFLCGINGSSPVVLNYTGQNC +
Sbjct: 659 DLNQSPATPFDMGSGFVNATAALDPGLIFDSSYDDYMSFLCGINGSSPVVLNYTGQNCLS 718
Query: 745 YNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHFSI 804
YNSTI+G DLNLPSITIA+L QSR VQR++TNIAGNETY VGWSAPYGV++KV P FSI
Sbjct: 719 YNSTINGTDLNLPSITIAKLYQSRMVQRSVTNIAGNETYKVGWSAPYGVTVKVVPACFSI 778
Query: 805 ASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARL 850
ASGE+QVL+VFF+A + + AS GRIGLFG+QGH++NIPLSV+ ++
Sbjct: 779 ASGERQVLSVFFDAIMNSSTASHGRIGLFGDQGHVLNIPLSVIVKV 824
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089234|emb|CBI39006.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1367 bits (3537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/855 (78%), Positives = 745/855 (87%), Gaps = 21/855 (2%)
Query: 6 RSCRWLRLFVVVLLLGFL--VCTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELR 63
S W+ L VV+ L F+ VC QD + DE+TAVYIVTLKQ P+ H + ELR
Sbjct: 2 ESVYWVHLMVVLCLGTFMGIVC------QDGA---DEVTAVYIVTLKQTPTSHYYG-ELR 51
Query: 64 RGNKNHGFHKQNGTSGRLSRLNNPR-NVSISHPRSGYNISRVHDSILRRAFKGEKYLKLY 122
+G ++G G+L RL+ PR N+S S P ISRVHDS+LRRA +GE+YLKLY
Sbjct: 52 KGTNVF----RHGVPGKLDRLHTPRRNISRSDPHYNSYISRVHDSLLRRALRGEQYLKLY 107
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGY 182
SYHYLINGF+VFVT QQAEKL++RREVANVV DFSVRTATTHTPQFLGLPQGAW+QEGGY
Sbjct: 108 SYHYLINGFAVFVTSQQAEKLAKRREVANVVLDFSVRTATTHTPQFLGLPQGAWVQEGGY 167
Query: 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA 242
++AGEG+VIGFIDTGIDPTHPSFA D SE +YPVP+HFSGICEVT DFPSGSCNRKL+GA
Sbjct: 168 DSAGEGIVIGFIDTGIDPTHPSFAVDRSEVAYPVPAHFSGICEVTPDFPSGSCNRKLVGA 227
Query: 243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPR 302
RHFAASAITRGIFN+SQDYASPFDGDGHG+HTAS+AAGNHGIPVVV GHHFGNASGMAPR
Sbjct: 228 RHFAASAITRGIFNASQDYASPFDGDGHGTHTASIAAGNHGIPVVVAGHHFGNASGMAPR 287
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDI+SLSITPNRRPPGIATFFNPIDMALL
Sbjct: 288 AHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIVSLSITPNRRPPGIATFFNPIDMALL 347
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLA 422
SA KAGIFVVQAAGNTGPSPKS+SSFSPWIFTVGAA+HDR Y+NSI+LGN++TI GVGLA
Sbjct: 348 SAVKAGIFVVQAAGNTGPSPKSVSSFSPWIFTVGAAAHDRAYSNSIVLGNNVTIPGVGLA 407
Query: 423 PGTD--KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLG 480
PGT +MYTL+SALHALNN+TT +DMYVGECQDSS+ QDLVQGNLLICSYSIRFVLG
Sbjct: 408 PGTHRGRMYTLVSALHALNNDTTIANDMYVGECQDSSSLKQDLVQGNLLICSYSIRFVLG 467
Query: 481 LSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540
LSTIKQA +TAKNLSAAG+VFYMDPFVIGFQLNP PMKMPGIII SPDDSKI LQYYN S
Sbjct: 468 LSTIKQALQTAKNLSAAGVVFYMDPFVIGFQLNPIPMKMPGIIISSPDDSKIFLQYYNHS 527
Query: 541 LERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLV 600
LER TK+I+KFGA A I GGLK N+SNSAPK+MYYSARGPDPEDSFLDDADIMKPNLV
Sbjct: 528 LERQGSTKEIVKFGAAASISGGLKPNYSNSAPKVMYYSARGPDPEDSFLDDADIMKPNLV 587
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APGN IWAAWSSLGTDSVEF GE+FAMMSGTSMAAPH++GLAALIKQKFP FSPSAI SA
Sbjct: 588 APGNFIWAAWSSLGTDSVEFLGENFAMMSGTSMAAPHVSGLAALIKQKFPKFSPSAIGSA 647
Query: 661 LSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDY 720
LST+A+LY++NGGPIMAQRAYA PD NQSPATPFDMGSGFVNATA+LDPGL+FDASY+DY
Sbjct: 648 LSTTASLYNRNGGPIMAQRAYANPDLNQSPATPFDMGSGFVNATAALDPGLIFDASYDDY 707
Query: 721 MSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGN 780
MSFLCGINGS+P+VLNYTG+ C ST++G D+NLPSITIARL Q+RTVQR +TN+ N
Sbjct: 708 MSFLCGINGSAPMVLNYTGEMCGV--STMNGTDINLPSITIARLEQTRTVQRRVTNVDSN 765
Query: 781 ETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIV 840
ETY VGWSAPYGVS+ V PTHF IA GE Q L V +AT + TAASFGRIGL G GHIV
Sbjct: 766 ETYIVGWSAPYGVSVNVVPTHFFIACGETQTLTVTLSATMNSTAASFGRIGLVGKGGHIV 825
Query: 841 NIPLSVVARLSYNAT 855
NIP++V+ + YN T
Sbjct: 826 NIPVAVIFKAKYNNT 840
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490755|ref|XP_004158698.1| PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SDD1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1339 bits (3466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 639/818 (78%), Positives = 733/818 (89%), Gaps = 9/818 (1%)
Query: 42 TAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNI 101
TAVYIVTLK+ PS + +LR+ + TSG LS ++ RN+S H R I
Sbjct: 32 TAVYIVTLKEPPSTTHYYGQLRQNTTSFS------TSGGLS-IHKARNISRKHRRYRSYI 84
Query: 102 SRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTA 161
+RVHDS+L++ +GEKYLKLYSYH+LINGF+V VT +QA KLS+R+EVANVV DFSVRTA
Sbjct: 85 ARVHDSLLKKVLRGEKYLKLYSYHFLINGFAVLVTEEQANKLSKRKEVANVVMDFSVRTA 144
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TTHTPQFLGLPQGAW Q+GG+E+AG G+VIGFIDTGIDP+HPSFADD +++ +P+P+HFS
Sbjct: 145 TTHTPQFLGLPQGAWSQDGGFESAGAGIVIGFIDTGIDPSHPSFADDLTDNPFPIPAHFS 204
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
GICEVT DFPSGSCNRKL+GARHFAASAITRGIFN++QDYASPFDGDGHG+HTAS+AAGN
Sbjct: 205 GICEVTPDFPSGSCNRKLVGARHFAASAITRGIFNATQDYASPFDGDGHGTHTASIAAGN 264
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
HGIPV+V GHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAA+DQAAQDGVDIISLSI
Sbjct: 265 HGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAVDQAAQDGVDIISLSI 324
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
TPNRRPPGIATFFNPIDMALLSA K GIFVVQAAGNTGP+PKSMSSFSPWIFTVGAASHD
Sbjct: 325 TPNRRPPGIATFFNPIDMALLSAVKTGIFVVQAAGNTGPAPKSMSSFSPWIFTVGAASHD 384
Query: 402 RIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNF 459
R Y NSI LGN++TI GVGLAPGT D Y LI+A+HALNN+T+ ++DMYVGECQDSSNF
Sbjct: 385 RSYANSISLGNNITIPGVGLAPGTYNDTKYKLIAAIHALNNDTSVSEDMYVGECQDSSNF 444
Query: 460 NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKM 519
+Q+L++GNLLICSYSIRFVLGLST+KQA + +KNLSAAG++FYMD FVIGF+LNP PMKM
Sbjct: 445 DQNLIEGNLLICSYSIRFVLGLSTVKQALQXSKNLSAAGVIFYMDSFVIGFRLNPIPMKM 504
Query: 520 PGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579
PGII+ SP+DSK+LLQYYNSSLE D +TKKI KFGAVA I GGLKAN+S+SAP+IMYYSA
Sbjct: 505 PGIIVSSPEDSKMLLQYYNSSLEVDGLTKKISKFGAVASICGGLKANYSSSAPQIMYYSA 564
Query: 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIA 639
RGPDPEDS LDD+DIMKPNLVAPGN IWAAWSS+ TDS+EF GE+FAMMSGTSMAAPHIA
Sbjct: 565 RGPDPEDSSLDDSDIMKPNLVAPGNFIWAAWSSVATDSIEFLGENFAMMSGTSMAAPHIA 624
Query: 640 GLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699
GLA+LIKQK+PSFSPSAIASALST+A+LYDK GGPIMAQRAYA P++NQSPATPFDMGSG
Sbjct: 625 GLASLIKQKYPSFSPSAIASALSTTASLYDKTGGPIMAQRAYANPEQNQSPATPFDMGSG 684
Query: 700 FVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSI 759
FVNATA+L+PGL+FD+SY+DYMSFLCGINGSSPVV NYTGQNC YNS+I+GADLNLPS+
Sbjct: 685 FVNATAALNPGLIFDSSYSDYMSFLCGINGSSPVVFNYTGQNCGLYNSSITGADLNLPSV 744
Query: 760 TIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNAT 819
TIA+LNQSR VQRT+TNIAG E YSVGWSAPYG+S+KVSP F+I SGEKQ L +FFN+T
Sbjct: 745 TIAKLNQSRVVQRTVTNIAGPEFYSVGWSAPYGISLKVSPIRFTIGSGEKQELTIFFNST 804
Query: 820 TSGTAASFGRIGLFGNQGHIVNIPLSVVARLSYNATTN 857
+ + ASFGRIGLFG+ GHI+NIPLSV+ ++SYN TTN
Sbjct: 805 MNSSVASFGRIGLFGSAGHIINIPLSVILKISYNNTTN 842
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434210|ref|XP_004134889.1| PREDICTED: subtilisin-like protease SDD1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1318 bits (3410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/802 (78%), Positives = 718/802 (89%), Gaps = 7/802 (0%)
Query: 42 TAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNI 101
TAVYIVTLK+ PS + +LR+ + F G S +R RN+S H R I
Sbjct: 32 TAVYIVTLKEPPSTTHYYGQLRQNTTS--FSTSGGLSIHKARY---RNISRKHRRYRSYI 86
Query: 102 SRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTA 161
+RVHDS+L++ +GEKYLKLYSYH+LINGF+V VT +QA KLS+R+EVANVV DFSVRTA
Sbjct: 87 ARVHDSLLKKVLRGEKYLKLYSYHFLINGFAVLVTEEQANKLSKRKEVANVVMDFSVRTA 146
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TTHTPQFLGLPQGAW Q+GG+E+AG G+VIGFIDTGIDP+HPSFADD +++ +P+P+HFS
Sbjct: 147 TTHTPQFLGLPQGAWSQDGGFESAGAGIVIGFIDTGIDPSHPSFADDLTDNPFPIPAHFS 206
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
GICEVT DFPSGSCNRKL+GARHFAASAITRGIFN++QDYASPFDGDGHG+HTAS+AAGN
Sbjct: 207 GICEVTPDFPSGSCNRKLVGARHFAASAITRGIFNATQDYASPFDGDGHGTHTASIAAGN 266
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
HGIPV+V GHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAA+DQAAQDGVDIISLSI
Sbjct: 267 HGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAVDQAAQDGVDIISLSI 326
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
TPNRRPPGIATFFNPIDMALLSA K GIFVVQAAGNTGP+PKSMSSFSPWIFTVGAASHD
Sbjct: 327 TPNRRPPGIATFFNPIDMALLSAVKTGIFVVQAAGNTGPAPKSMSSFSPWIFTVGAASHD 386
Query: 402 RIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNF 459
R Y NSI LGN++TI GVGLAPGT D Y LI+A+HALNN+T+ ++DMYVGECQDSSNF
Sbjct: 387 RSYANSISLGNNITIPGVGLAPGTYNDTKYKLIAAIHALNNDTSVSEDMYVGECQDSSNF 446
Query: 460 NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKM 519
+Q+L++GNLLICSYSIRFVLGLST+KQA +TAKNLSAAG++FYMD FVIGF+LNP PMKM
Sbjct: 447 DQNLIEGNLLICSYSIRFVLGLSTVKQALQTAKNLSAAGVIFYMDSFVIGFRLNPIPMKM 506
Query: 520 PGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579
PGII+ SP+DSK+LLQYYNSSLE D +TKKI KFGAVA I GGLKAN+S+SAP+IMYYSA
Sbjct: 507 PGIIVSSPEDSKMLLQYYNSSLEVDGLTKKISKFGAVASICGGLKANYSSSAPQIMYYSA 566
Query: 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIA 639
RGPDPEDS LDD+DIMKPNLVAPGN IWAAWSS+ TDS+EF GE+FAMMSGTSMAAPHIA
Sbjct: 567 RGPDPEDSSLDDSDIMKPNLVAPGNFIWAAWSSVATDSIEFLGENFAMMSGTSMAAPHIA 626
Query: 640 GLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699
GLA+LIKQK+PSFSPSAIASALST+A+LYDK GGPIMAQRAYA P++NQSPATPFDMGSG
Sbjct: 627 GLASLIKQKYPSFSPSAIASALSTTASLYDKTGGPIMAQRAYANPEQNQSPATPFDMGSG 686
Query: 700 FVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSI 759
FVNATA+L+PGL+FD+SY+DYMSFLCGINGSSPVV NYTGQNC YNS+I+GADLNLPS+
Sbjct: 687 FVNATAALNPGLIFDSSYSDYMSFLCGINGSSPVVFNYTGQNCGLYNSSITGADLNLPSV 746
Query: 760 TIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNAT 819
TIA+LNQSR VQRT+TNIAG E YSVGWSAPYG+S+KVSP F+I SGEKQ L +FFN+T
Sbjct: 747 TIAKLNQSRVVQRTVTNIAGPEFYSVGWSAPYGISLKVSPIRFTIGSGEKQELTIFFNST 806
Query: 820 TSGTAASFGRIGLFGNQGHIVN 841
+ + ASFGRIGLFG+ GHI+N
Sbjct: 807 MNSSVASFGRIGLFGSAGHIIN 828
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483988|ref|XP_002271023.2| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1306 bits (3379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/855 (75%), Positives = 723/855 (84%), Gaps = 45/855 (5%)
Query: 6 RSCRWLRLFVVVLLLGFL--VCTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELR 63
S W+ L VV+ L F+ VC QD + DE+TAVYIVTLKQ P+ H + ELR
Sbjct: 2 ESVYWVHLMVVLCLGTFMGIVC------QDGA---DEVTAVYIVTLKQTPTSHYYG-ELR 51
Query: 64 RGNKNHGFHKQNGTSGRLSRLNNPR-NVSISHPRSGYNISRVHDSILRRAFKGEKYLKLY 122
+G ++G G+L RL+ PR N+S S P ISRVHDS+LRRA +GE+YLKLY
Sbjct: 52 KGTNVF----RHGVPGKLDRLHTPRRNISRSDPHYNSYISRVHDSLLRRALRGEQYLKLY 107
Query: 123 SYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGY 182
SYHYLINGF+VFVT QQAEKL++RREVANVV DFSVRTATTHTPQFLGLPQGAW+QEGGY
Sbjct: 108 SYHYLINGFAVFVTSQQAEKLAKRREVANVVLDFSVRTATTHTPQFLGLPQGAWVQEGGY 167
Query: 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA 242
++AGEG+VIGFIDTGIDPTHPSFA D SE +YPVP+HFSGICEVT DFPSGSCNRKL+GA
Sbjct: 168 DSAGEGIVIGFIDTGIDPTHPSFAVDRSEVAYPVPAHFSGICEVTPDFPSGSCNRKLVGA 227
Query: 243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPR 302
RHFAASAITRGIFN+SQDYASPFDGDGHG+HTAS+AAGNHGIPVVV GHHFGNASGMAPR
Sbjct: 228 RHFAASAITRGIFNASQDYASPFDGDGHGTHTASIAAGNHGIPVVVAGHHFGNASGMAPR 287
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDI+SLSITPNRRPPGIATFFNPIDMALL
Sbjct: 288 AHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIVSLSITPNRRPPGIATFFNPIDMALL 347
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLA 422
SA KAGIFVVQAAGNTGPSPKS+SSFSPWIFTVGAA+HDR Y+NSI+LGN++TI GVGLA
Sbjct: 348 SAVKAGIFVVQAAGNTGPSPKSVSSFSPWIFTVGAAAHDRAYSNSIVLGNNVTIPGVGLA 407
Query: 423 PGTD--KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLG 480
PGT +MYTL+SALHALNN+TT +D+ YSIRFVLG
Sbjct: 408 PGTHRGRMYTLVSALHALNNDTTIANDI------------------------YSIRFVLG 443
Query: 481 LSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540
LSTIKQA +TAKNLSAAG+VFYMDPFVIGFQLNP PMKMPGIII SPDDSKI LQYYN S
Sbjct: 444 LSTIKQALQTAKNLSAAGVVFYMDPFVIGFQLNPIPMKMPGIIISSPDDSKIFLQYYNHS 503
Query: 541 LERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLV 600
LER TK+I+KFGA A I GGLK N+SNSAPK+MYYSARGPDPEDSFLDDADIMKPNLV
Sbjct: 504 LERQGSTKEIVKFGAAASISGGLKPNYSNSAPKVMYYSARGPDPEDSFLDDADIMKPNLV 563
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APGN IWAAWSSLGTDSVEF GE+FAMMSGTSMAAPH++GLAALIKQKFP FSPSAI SA
Sbjct: 564 APGNFIWAAWSSLGTDSVEFLGENFAMMSGTSMAAPHVSGLAALIKQKFPKFSPSAIGSA 623
Query: 661 LSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDY 720
LST+A+LY++NGGPIMAQRAYA PD NQSPATPFDMGSGFVNATA+LDPGL+FDASY+DY
Sbjct: 624 LSTTASLYNRNGGPIMAQRAYANPDLNQSPATPFDMGSGFVNATAALDPGLIFDASYDDY 683
Query: 721 MSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGN 780
MSFLCGINGS+P+VLNYTG+ C ST++G D+NLPSITIARL Q+RTVQR +TN+ N
Sbjct: 684 MSFLCGINGSAPMVLNYTGEMCGV--STMNGTDINLPSITIARLEQTRTVQRRVTNVDSN 741
Query: 781 ETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIV 840
ETY VGWSAPYGVS+ V PTHF IA GE Q L V +AT + TAASFGRIGL G GHIV
Sbjct: 742 ETYIVGWSAPYGVSVNVVPTHFFIACGETQTLTVTLSATMNSTAASFGRIGLVGKGGHIV 801
Query: 841 NIPLSVVARLSYNAT 855
NIP++V+ + YN T
Sbjct: 802 NIPVAVIFKAKYNNT 816
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511041|ref|XP_003524240.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1276 bits (3303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/817 (76%), Positives = 710/817 (86%), Gaps = 9/817 (1%)
Query: 39 DEITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRL-SRLNNPRNVSISHP-- 95
D TAVYIVTL+QAP+ H EL N ++G+SGR +R++ R+ ++S P
Sbjct: 11 DSTTAVYIVTLRQAPASHYHHHELITVGNN----SKHGSSGRRRTRVHKQRHQNVSKPVM 66
Query: 96 RSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSD 155
+ G +RVHDS+L + F GEKYLKLYSYHYLINGF+V VT QQAEKLSRRREV+NV D
Sbjct: 67 KRGSYFARVHDSLLNKVFNGEKYLKLYSYHYLINGFAVLVTQQQAEKLSRRREVSNVALD 126
Query: 156 FSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYP 215
FSVRTATTHTPQFLGLPQGAW+Q GG+ETAGEG+ IGF+DTGIDPTHPSFADD SEH +P
Sbjct: 127 FSVRTATTHTPQFLGLPQGAWLQAGGFETAGEGIAIGFVDTGIDPTHPSFADDKSEHPFP 186
Query: 216 VPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
VP+HFSG CEVT DFPSGSCNRKL+GARHFAASAITRGIFNSSQDYASPFDGDGHG+HTA
Sbjct: 187 VPAHFSGACEVTPDFPSGSCNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTA 246
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335
SVAAGNHGIPV+V G FGNASGMAP SHIA+YKALYK FGGFAADVVAAIDQAAQDGVD
Sbjct: 247 SVAAGNHGIPVIVAGQVFGNASGMAPHSHIAIYKALYKRFGGFAADVVAAIDQAAQDGVD 306
Query: 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTV 395
II LSITPNRRP GIATFFNPIDMALLSA KAGIFVVQAAGNTGPSP SMSSFSPWIFTV
Sbjct: 307 IICLSITPNRRPSGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPMSMSSFSPWIFTV 366
Query: 396 GAASHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGEC 453
GA SHDR+Y+NS+ LGN++TI GVGLAPGT + M+ LI A HALN NTT TDDMY+GEC
Sbjct: 367 GATSHDRVYSNSLCLGNNVTIPGVGLAPGTYENTMFKLIHARHALNKNTTVTDDMYIGEC 426
Query: 454 QDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLN 513
QD+S F+QDLVQGNLLICSYS+RFVLGLSTI+QA ETA NLSA G+VF MD FV FQLN
Sbjct: 427 QDASKFSQDLVQGNLLICSYSVRFVLGLSTIQQALETAMNLSAVGVVFSMDLFVTAFQLN 486
Query: 514 PTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573
P PMKMPGIIIPS +DSKILLQYYNSSL+ D + KI+KFGAVA I GGL+AN++N APK
Sbjct: 487 PVPMKMPGIIIPSANDSKILLQYYNSSLQIDGDSNKIVKFGAVASIGGGLEANYNNEAPK 546
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
++YYSARGPDPEDS +ADIMKPNLVAPGN IWAAWSS+ TDSVEF GE+FAMMSGTSM
Sbjct: 547 VVYYSARGPDPEDSLPHEADIMKPNLVAPGNFIWAAWSSVATDSVEFLGENFAMMSGTSM 606
Query: 634 AAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATP 693
AAPH+AGLAALIKQ+FP+FSP+AI SALST+A+LYD NG PIMAQR+Y D+N SPATP
Sbjct: 607 AAPHVAGLAALIKQQFPNFSPAAIGSALSTTASLYDNNGRPIMAQRSYPSIDQNLSPATP 666
Query: 694 FDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGAD 753
FDMGSGFVNATA+L+PGL+FD+SY+DYMSFLCGINGS+P VLNYTGQNCW YNST+ G D
Sbjct: 667 FDMGSGFVNATAALNPGLLFDSSYDDYMSFLCGINGSTPTVLNYTGQNCWTYNSTLYGPD 726
Query: 754 LNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLN 813
LNLPSITIARLNQSR VQR + NIAGNETY+VGWSAPYG SMKVSP +FS+ASGE+ VL+
Sbjct: 727 LNLPSITIARLNQSRVVQRIIQNIAGNETYNVGWSAPYGTSMKVSPNYFSLASGERLVLS 786
Query: 814 VFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARL 850
V FN T + +AAS+GRIGL+GNQGH+VNIP++V+ ++
Sbjct: 787 VIFNVTNNSSAASYGRIGLYGNQGHVVNIPVAVIFKI 823
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558532|ref|XP_003547559.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1271 bits (3289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/851 (73%), Positives = 712/851 (83%), Gaps = 38/851 (4%)
Query: 12 RLFVVVLLLGFLVCTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNKNHGF 71
L VVVL L C+ D D T VY+VTL+ AP H + ELRR + +GF
Sbjct: 47 HLVVVVLFCFGLFLPCLCQGNSD----DATTDVYVVTLRHAPVSHYYG-ELRR--EVNGF 99
Query: 72 HKQNGTSGRLSRLNNPR---NVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLI 128
K GR ++ N PR N++ + R ISRVHDS+L++ GEKYLKLYSYHYLI
Sbjct: 100 -KDAAAPGR-TQFNKPRRYDNITKTDKRYDSYISRVHDSLLKKVLNGEKYLKLYSYHYLI 157
Query: 129 NGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEG 188
NGF+V VT QQAEKLSR EV+NVV DFSVRTATTHTPQFLGLP+GAW Q+GG+ETAGEG
Sbjct: 158 NGFAVLVTQQQAEKLSRSSEVSNVVLDFSVRTATTHTPQFLGLPEGAWFQDGGFETAGEG 217
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
VVIGF+DTGIDPTHPSF D+ E YPVP+HFSGICEVTRDFPSGSCNRKL+GARHFAAS
Sbjct: 218 VVIGFVDTGIDPTHPSFDDNKYEKPYPVPAHFSGICEVTRDFPSGSCNRKLVGARHFAAS 277
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVY 308
AITRGIFNS+QDYASPFDGDGHG+HTASVAAGNHGIPV+V GHHFGNASGMAPRSHIAVY
Sbjct: 278 AITRGIFNSTQDYASPFDGDGHGTHTASVAAGNHGIPVIVAGHHFGNASGMAPRSHIAVY 337
Query: 309 KALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAG 368
KALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPG+ATFFNPIDMAL+SA K G
Sbjct: 338 KALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALMSAVKQG 397
Query: 369 IFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD-- 426
IFVVQAAGNTGPSP SM SFSPWI+TVGAASHDR+Y+N+I LGN++TI GVGLA GTD
Sbjct: 398 IFVVQAAGNTGPSPTSMFSFSPWIYTVGAASHDRVYSNAIFLGNNVTIPGVGLASGTDES 457
Query: 427 KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQ 486
K+Y LI A H+L+N+TT DD+Y SIRFVLGLSTIKQ
Sbjct: 458 KLYKLIHAHHSLSNDTTVADDIY------------------------SIRFVLGLSTIKQ 493
Query: 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEV 546
A ETAKNLSAAG+VFYMDPFVIGFQLNP PMKMPGIII S +DSK+L+QYYNSSLE D V
Sbjct: 494 ASETAKNLSAAGVVFYMDPFVIGFQLNPVPMKMPGIIIASTNDSKVLMQYYNSSLEIDAV 553
Query: 547 TKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSI 606
+ KI+KFGAVA I GGLKAN+SN APK+MYYSARGPDPEDS +ADI+KPNL+APGN I
Sbjct: 554 SNKIVKFGAVASICGGLKANYSNVAPKVMYYSARGPDPEDSLPHEADILKPNLLAPGNFI 613
Query: 607 WAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666
WAAWSS+GT+SVEF GE+FA+MSGTSMAAPH+AGLAALI+QKFP+FSP+AI SALS++A+
Sbjct: 614 WAAWSSVGTESVEFLGENFALMSGTSMAAPHVAGLAALIRQKFPNFSPAAIGSALSSTAS 673
Query: 667 LYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCG 726
LYDK+GGPIMAQR+YA PD NQSPATPFDMGSGFVNA+ +L+PGLVFD+ Y+DYMSFLCG
Sbjct: 674 LYDKSGGPIMAQRSYASPDLNQSPATPFDMGSGFVNASGALNPGLVFDSGYDDYMSFLCG 733
Query: 727 INGSSPVVLNYTGQNCWAYNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGNETYSVG 786
INGS+PVVLNYTGQNC YNST+ G DLNLPSITI++LNQSR VQRT+ N+A NE+YSVG
Sbjct: 734 INGSAPVVLNYTGQNCGLYNSTVYGPDLNLPSITISKLNQSRIVQRTVQNVAQNESYSVG 793
Query: 787 WSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSV 846
W+APYGVS+KVSPTHF I SGE QVL+V NAT + + ASFGRIGLFGNQGH+VNIPLSV
Sbjct: 794 WTAPYGVSVKVSPTHFCIPSGESQVLSVLLNATLNSSVASFGRIGLFGNQGHVVNIPLSV 853
Query: 847 VARLSYNATTN 857
+ ++SYN TT+
Sbjct: 854 MVKISYNTTTS 864
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528418|ref|XP_003532800.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1270 bits (3287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/817 (76%), Positives = 707/817 (86%), Gaps = 9/817 (1%)
Query: 39 DEITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRL-SRLNNPRNVSISHP-- 95
D T VYIVTL+QAP+ H EL N ++G+SGR +R++ PR+ +++ P
Sbjct: 11 DATTTVYIVTLRQAPASHYHQHELITVGNN----SRHGSSGRRRTRVHKPRHQNVTKPDR 66
Query: 96 RSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSD 155
+ G SRVHDS+L + F GEKYLKLYSYHYLINGF+V VT QQAEKLSRRREV+NVV D
Sbjct: 67 KRGSYFSRVHDSLLNKVFNGEKYLKLYSYHYLINGFAVLVTQQQAEKLSRRREVSNVVLD 126
Query: 156 FSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYP 215
FSVRTATTHTPQFLGLPQGAW Q GG+ETAGEG+ IGF+DTGIDPTHPSFADD SEH +P
Sbjct: 127 FSVRTATTHTPQFLGLPQGAWSQAGGFETAGEGITIGFVDTGIDPTHPSFADDKSEHPFP 186
Query: 216 VPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
VP+HFSGICEVT DFPS SCNRKL+GARHFAASAITRGIFNSSQDYASPFDGDGHG+HTA
Sbjct: 187 VPAHFSGICEVTPDFPSRSCNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTA 246
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335
SVAAGNHGIPVVV G FGNASGMAP SHIA+YKALYK FGGFAADVVAAIDQAAQD VD
Sbjct: 247 SVAAGNHGIPVVVAGQFFGNASGMAPHSHIAIYKALYKRFGGFAADVVAAIDQAAQDRVD 306
Query: 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTV 395
II LSITPNRRP GIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP SMSSFSPWIFTV
Sbjct: 307 IICLSITPNRRPSGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPMSMSSFSPWIFTV 366
Query: 396 GAASHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGEC 453
GA SHDR+Y NS+ LGN++TI GVGLAPGT + ++ LI A HALN NTT TDDMY+GEC
Sbjct: 367 GATSHDRVYINSLCLGNNVTIPGVGLAPGTYENTLFKLIHARHALNKNTTVTDDMYIGEC 426
Query: 454 QDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLN 513
QDSS F+QDLVQGNLLICSYS++FVLGLSTI+QA ETA NLSA G+VF MDPFV FQLN
Sbjct: 427 QDSSKFSQDLVQGNLLICSYSVQFVLGLSTIQQALETAMNLSAVGVVFSMDPFVTSFQLN 486
Query: 514 PTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573
P PMKMPGIIIPS +DSKILLQYYNSSL+ D + KI+KFGAVA I GGL+AN +N AP
Sbjct: 487 PVPMKMPGIIIPSANDSKILLQYYNSSLQIDGDSNKIVKFGAVASIGGGLEANCNNEAPM 546
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
++YYSARGPDPEDS +ADIMKPNLVAPGN IWAAWSS+ TDSVEF GE+FAMMSGTSM
Sbjct: 547 VVYYSARGPDPEDSLPHEADIMKPNLVAPGNFIWAAWSSVATDSVEFLGENFAMMSGTSM 606
Query: 634 AAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATP 693
AAPH+AGLAAL+KQKFP+FSP+AI SALST+A+LYD N PIMAQR+Y D N SPATP
Sbjct: 607 AAPHVAGLAALVKQKFPNFSPAAIGSALSTTASLYDNNRRPIMAQRSYPSIDLNLSPATP 666
Query: 694 FDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGAD 753
FDMGSGFVNATA+L+PGL+FD+ Y+DYMSFLCGINGS+P VLNYTGQNCW YNST+ G D
Sbjct: 667 FDMGSGFVNATAALNPGLLFDSGYDDYMSFLCGINGSTPTVLNYTGQNCWTYNSTLYGPD 726
Query: 754 LNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLN 813
LNLPSITIARLNQSR VQRT+ NIAGNETY+VGWSAPYG SMKV P HFS+ASGE+ VL+
Sbjct: 727 LNLPSITIARLNQSRVVQRTIQNIAGNETYNVGWSAPYGTSMKVFPNHFSLASGERLVLS 786
Query: 814 VFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARL 850
V FNAT++ +AAS+GRIGL+GNQGH+VNIP++V+ ++
Sbjct: 787 VIFNATSNSSAASYGRIGLYGNQGHVVNIPVAVIFKI 823
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530513|ref|XP_003533825.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/838 (74%), Positives = 706/838 (84%), Gaps = 34/838 (4%)
Query: 25 CTSFCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRL 84
C C Q DS+ D + VY+VTL+ AP H + LRR + +GF GR ++
Sbjct: 17 CFLPCLCQGDSD-DATTSDVYVVTLRHAPVSHYYGG-LRR--EVNGFKDAAAAPGR-TQF 71
Query: 85 NNPR---NVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAE 141
N PR N++ + R G ISRVHDS+L++ GEKYLKLYSYHYLINGF+V VT QQAE
Sbjct: 72 NKPRRYGNITKTDKRYGSYISRVHDSLLKKVLNGEKYLKLYSYHYLINGFAVLVTQQQAE 131
Query: 142 KLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPT 201
KLSR EV+NVV DFSVRTATTHTPQFLGLPQGAW Q+GG+ETAGEGVVIGF+DTGIDPT
Sbjct: 132 KLSRSSEVSNVVLDFSVRTATTHTPQFLGLPQGAWFQDGGFETAGEGVVIGFVDTGIDPT 191
Query: 202 HPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261
HPSF D+ E YPVP+HFSGICEVTRDFPSGSCNRKL+GARHFAASAITRGIFNS+QDY
Sbjct: 192 HPSFDDNKYEKPYPVPAHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDY 251
Query: 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAAD 321
ASPFDGDGHG+HTASVAAGNHGIPV+V GHHFGNASGMAPRSHIAVYKALYKSFGGFAAD
Sbjct: 252 ASPFDGDGHGTHTASVAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAAD 311
Query: 322 VVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS 381
VVAAIDQAAQDGVDIISLSITPNRRPPG+ATFFNPIDMALLSA K GIFVVQAAGNTGPS
Sbjct: 312 VVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALLSAVKQGIFVVQAAGNTGPS 371
Query: 382 PKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALN 439
P SM SFSPWI+TVGAASHDR+Y+NSI LGN++TI GVGLAPGTD K+Y LI A HAL+
Sbjct: 372 PTSMFSFSPWIYTVGAASHDRVYSNSIFLGNNVTIPGVGLAPGTDESKLYKLIHAHHALS 431
Query: 440 NNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499
N+TT DD+Y SIRFVLGLSTIK+A ETAKNLSAAG+
Sbjct: 432 NDTTVADDIY------------------------SIRFVLGLSTIKRASETAKNLSAAGV 467
Query: 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACI 559
VFYMDPFVIGFQLNP PMKMPGIII S +DSK+L QYYNSSLE D V+KKI+KFGAVA I
Sbjct: 468 VFYMDPFVIGFQLNPVPMKMPGIIIASTNDSKVLTQYYNSSLEIDAVSKKIVKFGAVATI 527
Query: 560 LGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVE 619
GGLK N+SN APK+MYYSARGPDPEDS +ADI+KPNL+APGN IWAAWSS+GTDSVE
Sbjct: 528 CGGLKPNYSNVAPKVMYYSARGPDPEDSLPHEADILKPNLLAPGNFIWAAWSSVGTDSVE 587
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQR 679
F GE+FA+MSGTSMAAPH+AGLAALI+QKFP+FSP+AI SALST+A+LYDK+GGPIMAQR
Sbjct: 588 FLGENFALMSGTSMAAPHVAGLAALIRQKFPNFSPAAIGSALSTTASLYDKSGGPIMAQR 647
Query: 680 AYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTG 739
+YA PD+NQ PATPFDMGSGFVNA+ +L+PGLVFD+ Y+DYMSFLCGINGS+PVVLNYTG
Sbjct: 648 SYASPDQNQPPATPFDMGSGFVNASGALNPGLVFDSGYDDYMSFLCGINGSAPVVLNYTG 707
Query: 740 QNCWAYNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSP 799
QNC YN T+ G DLNLPSITI++LNQSR VQRT+ NIA NE+YSVGW+AP GVS+KVSP
Sbjct: 708 QNCALYNLTVYGPDLNLPSITISKLNQSRIVQRTVQNIAQNESYSVGWTAPNGVSVKVSP 767
Query: 800 THFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARLSYNATTN 857
THF I SGE+QVL+V NAT S + ASFGRIGLFGNQGH+VNIPLSV+ ++S N TT+
Sbjct: 768 THFCIGSGERQVLSVLLNATLSSSVASFGRIGLFGNQGHVVNIPLSVMVKISSNTTTS 825
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| TAIR|locus:2128595 | 856 | AT4G20430 "AT4G20430" [Arabido | 0.954 | 0.956 | 0.679 | 1.9e-305 | |
| TAIR|locus:2163446 | 840 | AT5G44530 "AT5G44530" [Arabido | 0.938 | 0.958 | 0.667 | 2.6e-301 | |
| UNIPROTKB|Q94EF5 | 849 | P0665A11.6 "Uncharacterized pr | 0.948 | 0.958 | 0.65 | 8.3e-296 | |
| TAIR|locus:2204619 | 832 | AT1G30600 "AT1G30600" [Arabido | 0.941 | 0.971 | 0.623 | 4.3e-276 | |
| UNIPROTKB|Q5Z852 | 820 | P0468G03.18 "Putative meiotic | 0.861 | 0.901 | 0.450 | 6.6e-168 | |
| TAIR|locus:2059052 | 815 | SLP3 "AT2G19170" [Arabidopsis | 0.914 | 0.963 | 0.429 | 2.4e-163 | |
| TAIR|locus:2126485 | 816 | AT4G30020 "AT4G30020" [Arabido | 0.913 | 0.960 | 0.428 | 1e-162 | |
| UNIPROTKB|Q0JBB7 | 815 | Os04g0543700 "Os04g0543700 pro | 0.848 | 0.893 | 0.414 | 3.2e-145 | |
| TAIR|locus:2027139 | 832 | ALE1 "AT1G62340" [Arabidopsis | 0.858 | 0.885 | 0.402 | 6.5e-138 | |
| UNIPROTKB|Q6ZKR5 | 796 | OJ1117_F10.11 "Os08g0452100 pr | 0.399 | 0.430 | 0.347 | 5.3e-72 |
| TAIR|locus:2128595 AT4G20430 "AT4G20430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2931 (1036.8 bits), Expect = 1.9e-305, P = 1.9e-305
Identities = 563/829 (67%), Positives = 661/829 (79%)
Query: 32 QDDSEPDD--EITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLN-NPR 88
QD+ D TAVYIVTL+QA S+H F QE + K TS + +R PR
Sbjct: 26 QDNGGDSDINSTTAVYIVTLRQASSLHLFQQEAEEVKRVRDQSKHGDTS-KFTRPKLQPR 84
Query: 89 NVSIS-HPRSGYN-ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRR 146
N+S S + RS + I++ HDS+LR A KGEKY+KLYS+HYLINGF+VFV+ QQAE LSRR
Sbjct: 85 NISRSRYWRSRRSAIAQAHDSLLRNALKGEKYIKLYSFHYLINGFAVFVSSQQAETLSRR 144
Query: 147 REVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSF- 205
REVAN+V DFSVRTATT+TPQF+GLP+GAW++EGGYETAGEG+VIGFIDTGIDPTHPSF
Sbjct: 145 REVANIVLDFSVRTATTYTPQFMGLPKGAWVKEGGYETAGEGIVIGFIDTGIDPTHPSFN 204
Query: 206 ADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265
D S+ YP+P+HFSG+CEVT DFPSGSCNRKL+GARHFA SAITRGIFNSS+DYASPF
Sbjct: 205 GTDTSQRQYPIPNHFSGVCEVTPDFPSGSCNRKLVGARHFAQSAITRGIFNSSEDYASPF 264
Query: 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXX 325
DGDGHG+HTAS+AAGNHG+ VV+GH+FG+ASG+APR+HI+VYKALYKSFGGF
Sbjct: 265 DGDGHGTHTASIAAGNHGVSAVVSGHNFGSASGIAPRAHISVYKALYKSFGGFAADVVAA 324
Query: 326 XXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM 385
SLSITPNRRPPG+ATFFNP+DMA+LSA KAGIFVVQAAGNTGPSPKSM
Sbjct: 325 IDQAAQDGVDILSLSITPNRRPPGVATFFNPLDMAMLSAVKAGIFVVQAAGNTGPSPKSM 384
Query: 386 SSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALXXXXX 443
SSFSPWIFTVGAASHDR Y+NSI+LGN+++I GVGLA TD K YT+ISAL AL
Sbjct: 385 SSFSPWIFTVGAASHDRDYSNSIVLGNNVSIPGVGLALRTDEGKKYTMISALDALKNKSS 444
Query: 444 XXD-DMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFY 502
D DMYVGECQD +F++D+++GNLLICSYSIRFVLGLSTIKQA AKNLSA G+VFY
Sbjct: 445 VVDKDMYVGECQDYGSFDKDVIRGNLLICSYSIRFVLGLSTIKQALAVAKNLSAKGVVFY 504
Query: 503 MDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG 562
MDP+V+GFQ+NPTPM MPGIIIPS +DSK+LL+YYNSSL RD TK+I++FGAVA I GG
Sbjct: 505 MDPYVLGFQINPTPMDMPGIIIPSAEDSKVLLKYYNSSLVRDGTTKEIVRFGAVAAIAGG 564
Query: 563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQG 622
ANFSN APKIMYYSARGPDP+DS +DADI+KPNLVAPGNSIW AWSS T+S EF+G
Sbjct: 565 QNANFSNRAPKIMYYSARGPDPQDSLFNDADILKPNLVAPGNSIWGAWSSAATESTEFEG 624
Query: 623 ESFAMMSGTSMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYA 682
ESFAMMSGTSMAAPH+AG+AAL+KQK +D G IMAQRAYA
Sbjct: 625 ESFAMMSGTSMAAPHVAGVAALVKQKFRKFSPSAIASALSTTSVLFDNKGEAIMAQRAYA 684
Query: 683 KPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNC 742
PD+ SPATPFDMG+GFVNATA+LDPGL+FD S+ DYMSFLCGINGS+PVV NYTG NC
Sbjct: 685 NPDQTISPATPFDMGNGFVNATAALDPGLIFDTSFEDYMSFLCGINGSAPVVFNYTGTNC 744
Query: 743 WAYNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHF 802
N+TISG+DLNLPSIT+++LN +RTVQR +TNIAGNETY+V P+ V + VSPT F
Sbjct: 745 LRNNATISGSDLNLPSITVSKLNNTRTVQRLMTNIAGNETYTVSLITPFDVLINVSPTQF 804
Query: 803 SIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARLS 851
SIASGE ++L+V A + + +SFG I L GN GHIV IP+SV +++
Sbjct: 805 SIASGETKLLSVILTAKRNSSISSFGGIKLLGNAGHIVRIPVSVTVKIA 853
|
|
| TAIR|locus:2163446 AT5G44530 "AT5G44530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2892 (1023.1 bits), Expect = 2.6e-301, P = 2.6e-301
Identities = 547/820 (66%), Positives = 650/820 (79%)
Query: 36 EPDDEITAVYIVTLKQAPSVHRFA-QELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISH 94
+ DD+ +AVYIVTLKQ P VH F QEL+ HK++ + +L NN R H
Sbjct: 30 QDDDDDSAVYIVTLKQPPIVHLFEEQELK--------HKKSKFTPKLRPRNNSRK---RH 78
Query: 95 PRSGY-NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVV 153
+S ++ + HDS LR+ KGEKY+KLYSYHYLINGF++F+ QQAEKLS R+EVAN+V
Sbjct: 79 GKSKIPSVVQSHDSFLRKTLKGEKYIKLYSYHYLINGFALFINSQQAEKLSMRKEVANIV 138
Query: 154 SDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHS 213
D+SVRTATT+TPQF+GLPQGAW++EGG+E AGEGV+IGFIDTGIDP HPSF D+ S+ S
Sbjct: 139 LDYSVRTATTYTPQFMGLPQGAWVKEGGFEIAGEGVIIGFIDTGIDPNHPSFNDNDSKRS 198
Query: 214 YPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSH 273
YP+P HFSG+CEVT DFPSGSCN+KLIGARHFA SA+TRGIFNSS+DYASPFDGDGHG+H
Sbjct: 199 YPIPKHFSGVCEVTPDFPSGSCNKKLIGARHFAQSAVTRGIFNSSEDYASPFDGDGHGTH 258
Query: 274 TASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXX 333
TASVAAGNHG+PV+V+ H+FG ASG+APR+ I+VYKALYKSFGGF
Sbjct: 259 TASVAAGNHGVPVIVSNHNFGYASGIAPRAFISVYKALYKSFGGFAADVVAAIDQAAQDG 318
Query: 334 XXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIF 393
SLSITPNR+PPG+ATFFNPIDMALLSA KAGIFVVQAAGNTGP+PK+MSSFSPWIF
Sbjct: 319 VDILSLSITPNRKPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKTMSSFSPWIF 378
Query: 394 TVGAASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALXXXXXXXDDMYVG 451
TVGA+SHDR+Y+NS+ LGN++TI G+G A TD KMY +ISA HAL DMYVG
Sbjct: 379 TVGASSHDRVYSNSLTLGNNVTIPGMGFAIPTDSGKMYKMISAFHALNNSTSVDKDMYVG 438
Query: 452 ECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ 511
ECQD NF+QD V G LLICSYS RFVLGLSTIKQA + AKNLSA G++FY+DP+V+GF+
Sbjct: 439 ECQDYENFDQDRVSGKLLICSYSARFVLGLSTIKQALDVAKNLSATGVIFYIDPYVLGFE 498
Query: 512 LNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571
+NPTPM MPGIIIPS +DSK LL+YYNSS++RD TK+I+ FGAVA I GGL ANFSN A
Sbjct: 499 INPTPMDMPGIIIPSVEDSKTLLKYYNSSIQRDVTTKEIVSFGAVAAIEGGLNANFSNRA 558
Query: 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGT 631
PK+MYYSARGPDPED+ +DAD++KPNLVAPGNSIW AWSS TDS EF+GE FAMMSGT
Sbjct: 559 PKVMYYSARGPDPEDNSFNDADVLKPNLVAPGNSIWGAWSSASTDSTEFEGEKFAMMSGT 618
Query: 632 SMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPA 691
SMAAPH+AG+AALIKQ D G PIMAQR Y+ PD++ A
Sbjct: 619 SMAAPHVAGVAALIKQSYPQFTPSTISSALSTTALLNDNKGSPIMAQRTYSNPDQSLYTA 678
Query: 692 TPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISG 751
TP DMGSGFVNATA+LDPGLVFD S+ DY+SFLCGINGS VV NYTG C A N+ +SG
Sbjct: 679 TPSDMGSGFVNATAALDPGLVFDTSFEDYISFLCGINGSDTVVFNYTGFRCPANNTPVSG 738
Query: 752 ADLNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQV 811
DLNLPSIT++ L+ ++T QR++ NIAGNETY+VGWS PYGVSMKVSPT FSIA GE QV
Sbjct: 739 FDLNLPSITVSTLSGTQTFQRSMRNIAGNETYNVGWSPPYGVSMKVSPTQFSIAMGENQV 798
Query: 812 LNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARLS 851
L+V T + +++SFGRIGLFGN GHIVNIP++V+A+++
Sbjct: 799 LSVTLTVTKNSSSSSFGRIGLFGNTGHIVNIPVTVIAKIA 838
|
|
| UNIPROTKB|Q94EF5 P0665A11.6 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2840 (1004.8 bits), Expect = 8.3e-296, P = 8.3e-296
Identities = 533/820 (65%), Positives = 647/820 (78%)
Query: 39 DEITAVYIVTLKQAPSVHRFAQELRRGNKN--HGFHKQNGTSGRLSRLNNPRNVSISHPR 96
+E TAVYIVT+KQAP H+ R G+ G G + S L PR+
Sbjct: 32 EEGTAVYIVTMKQAPVFHKRLDLERFGSSRVAGGGGGGGGDTPSTSILMKPRHGPAQPMN 91
Query: 97 SGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDF 156
G + R+ +S+L+R +GE+Y+KLYSY YLINGF+V +TPQQAE+LS +EVANV+ DF
Sbjct: 92 YGSYLVRLQNSLLKRTLRGERYIKLYSYRYLINGFAVVITPQQAERLSMTKEVANVMLDF 151
Query: 157 SVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPV 216
SVRTATTHTP+FLGLPQGAW+QEGG + AG+GVV+G IDTGIDPTHPSFADD SYPV
Sbjct: 152 SVRTATTHTPEFLGLPQGAWVQEGGPQCAGQGVVVGLIDTGIDPTHPSFADDLITDSYPV 211
Query: 217 PSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS 276
P+H+SGICEVT DFPSGSCNRKL+GARHFAASAITRG+FN+SQD+ASP D DGHG+HTAS
Sbjct: 212 PAHYSGICEVTNDFPSGSCNRKLVGARHFAASAITRGVFNASQDHASPSDSDGHGTHTAS 271
Query: 277 VAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXX 336
+AAGNHGIPVVV GHHFGNASGMAPR+HIAVYKALYKSFGGF
Sbjct: 272 IAAGNHGIPVVVAGHHFGNASGMAPRAHIAVYKALYKSFGGFAADVVAAIDQAAEDNVDI 331
Query: 337 XSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396
SLSITPNRRPPG+ATFFNPIDMALLSA KAGIFVVQAAGNTGPSPKSMSS+SPWIFTVG
Sbjct: 332 ISLSITPNRRPPGLATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSYSPWIFTVG 391
Query: 397 AASHDRIYTNSIILGNSLTISGVGLAPGTD--KMYTLISALHALXXXXXXXDDMYVGECQ 454
A++HDR Y N ++LGN+LTI+GVGLAPGTD M+TL++A HAL +M +GECQ
Sbjct: 392 ASAHDREYNNYVVLGNNLTITGVGLAPGTDGDSMFTLVAAPHALKNNVASPTEMSLGECQ 451
Query: 455 DSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNP 514
DSS+ ++DL++G +L+CSYSIRFVLGLS++KQA +TAKN+SAAG++FY+DPFVIGFQLNP
Sbjct: 452 DSSHLDEDLIRGKILVCSYSIRFVLGLSSVKQALDTAKNVSAAGVIFYLDPFVIGFQLNP 511
Query: 515 TPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574
TPM MPG+IIPS DDSK+ L YYN SL RDE + KI+ FGA+A ILGG N+ SAPK+
Sbjct: 512 TPMDMPGLIIPSSDDSKVFLNYYNESLVRDETSNKIVSFGAIAKILGGQNPNYGISAPKV 571
Query: 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMA 634
M+YSARGPDPED+ L +ADI+KPNL+APG+SIW AWSSLG DS EF GESFA++SGTSMA
Sbjct: 572 MFYSARGPDPEDNSLANADILKPNLIAPGSSIWGAWSSLGLDSAEFAGESFAIISGTSMA 631
Query: 635 APHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPATPF 694
APH+AGLAAL+KQK D+ G PIMAQR Y P+ QSPATPF
Sbjct: 632 APHVAGLAALVKQKFPYFSPAAIGSALSTTTSLSDREGNPIMAQRTYGNPNSTQSPATPF 691
Query: 695 DMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADL 754
DMG+GFVNATA+LDPGL+FD+SY+D+ SFLCGINGS+PVV+NYTG +C +S ++GADL
Sbjct: 692 DMGNGFVNATAALDPGLIFDSSYDDFFSFLCGINGSAPVVMNYTGNSC--SSSAMTGADL 749
Query: 755 NLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNV 814
NLPSITIA LNQSRT+ RT+TN+A +E Y+V +SAPYGV++ SP F I SG++Q +
Sbjct: 750 NLPSITIAVLNQSRTITRTVTNVASDERYTVSYSAPYGVAVSASPAQFFIPSGQRQQVTF 809
Query: 815 FFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARLSYNA 854
NAT +GT+ASFG +G +G++GH V IP SV++++ + +
Sbjct: 810 VVNATMNGTSASFGSVGFYGDKGHRVMIPFSVISKVVHRS 849
|
|
| TAIR|locus:2204619 AT1G30600 "AT1G30600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2654 (939.3 bits), Expect = 4.3e-276, P = 4.3e-276
Identities = 516/827 (62%), Positives = 622/827 (75%)
Query: 28 FCRAQDDSEPDDEITAVYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNP 87
FC A+ D +AVYIVTLK PSVH +E + H TS ++ R N
Sbjct: 21 FCLAESDQNATVS-SAVYIVTLKDRPSVHFSGRE-----SSDSKHSLTATSSQIYRTLN- 73
Query: 88 RNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRR 147
RS +I RVHDS+LR + E YLKLYSYHYLINGFS +T +QA++L+ R
Sbjct: 74 --------RSA-SIIRVHDSLLRNVLRKENYLKLYSYHYLINGFSAVLTRKQADRLAARE 124
Query: 148 EVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFAD 207
EV NVV DF V ATTHTPQFLGLP+GAW+++GG E AGEGVVIGFIDTGIDPTHPSF+D
Sbjct: 125 EVENVVLDFLVEKATTHTPQFLGLPRGAWLRDGGSEYAGEGVVIGFIDTGIDPTHPSFSD 184
Query: 208 DASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267
S H+Y VP HF+G+CEVT FP GSCNRKLIGARHFA SA++RG+ NSSQD ASPFDG
Sbjct: 185 KISGHTYSVPPHFTGVCEVTIGFPPGSCNRKLIGARHFAESALSRGVLNSSQDDASPFDG 244
Query: 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXX 327
+GHG+HTASVAAGNHGIPVVV GH GNASGMAPR+HIA+YKALYK FGGF
Sbjct: 245 EGHGTHTASVAAGNHGIPVVVAGHRLGNASGMAPRAHIAIYKALYKRFGGFAADIIAAID 304
Query: 328 XXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS 387
+LSITPNRRPPGIATFFNPIDMALLSA KAGIFVVQAAGNTGP+PKSMSS
Sbjct: 305 QAAQDGVDIINLSITPNRRPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKSMSS 364
Query: 388 FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALXXXXXXXDD 447
FSPWIFTVGA SHDR+Y+NSIILGN++TI GVGLA GT M+ L+ A HAL D
Sbjct: 365 FSPWIFTVGATSHDRVYSNSIILGNNVTIPGVGLASGTRIMHKLVLATHALRNGTTVMDA 424
Query: 448 MYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507
+YVGECQDSS+F+Q LVQG +L+CSY++RF+LG+STIKQA TAKNL+AAG+VFY+DP
Sbjct: 425 IYVGECQDSSSFDQKLVQGKILVCSYTVRFILGVSTIKQALLTAKNLTAAGLVFYIDPSA 484
Query: 508 IGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567
GFQ+ +PM +PGI+I SP DS+ LL+YYNSSL R+ + KI+ +VA I+GG++ +
Sbjct: 485 TGFQMTSSPMDIPGILISSPQDSQALLRYYNSSLLRENGSGKIVGSASVAKIVGGMRPTY 544
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+APK+MY+SARGPDPED DADIMKPNLVAPGN+IW AWS LG + +FQGE FAM
Sbjct: 545 GITAPKVMYFSARGPDPEDDSFVDADIMKPNLVAPGNAIWGAWSPLGIGTNDFQGERFAM 604
Query: 628 MSGTSMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDEN 687
SGTSM+APH+ G+AALIKQK D+ G IMAQR PD +
Sbjct: 605 ESGTSMSAPHVTGIAALIKQKFPHFTPAAIASALSTTASLSDRKGEHIMAQRTVLNPDIS 664
Query: 688 QSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNS 747
QSPATPFDMGSGFVNATA+LDPGL+FD YN+YM FLCGINGSSPVVLNYTG++C +YNS
Sbjct: 665 QSPATPFDMGSGFVNATAALDPGLIFDIGYNEYMKFLCGINGSSPVVLNYTGESCSSYNS 724
Query: 748 TISGADLNLPSITIARLNQSRTVQRTLTNIAG---NETYSVGWSAPYGVSMKVSPTHFSI 804
+++ +DLNLPS+TIA+L +R V R +TNIA NETY VGW AP VS+KVSP F+I
Sbjct: 725 SLAASDLNLPSVTIAKLVGTRAVLRWVTNIATTATNETYIVGWMAPDSVSVKVSPAKFTI 784
Query: 805 ASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVARLS 851
+G+ +VL++ F A + + ASFGRIGLFG++GH+VNIP++V+ +++
Sbjct: 785 GNGQTRVLSLVFRAMKNVSMASFGRIGLFGDRGHVVNIPVAVIYKIA 831
|
|
| UNIPROTKB|Q5Z852 P0468G03.18 "Putative meiotic serine proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1633 (579.9 bits), Expect = 6.6e-168, P = 6.6e-168
Identities = 339/753 (45%), Positives = 459/753 (60%)
Query: 100 NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVR 159
++ R HD +L Y KLYSYH+LINGF+V ++P QAE L + V +V D ++
Sbjct: 68 HLRRYHDKLLDSLLVEGTYEKLYSYHHLINGFAVHMSPLQAEFLRKAPGVKHVERDMKIQ 127
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSH 219
TTHTPQFLGLP G W GG++ AGE VVIGF+D+GI P HPSF+ ++ PVP H
Sbjct: 128 KLTTHTPQFLGLPTGVWPTGGGFDRAGEDVVIGFVDSGIYPQHPSFSAHKTDPYGPVP-H 186
Query: 220 FSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA 279
+ G CE+ CN K++GA+HFA +AI G FN D+ASP DGDGHGSHTA++AA
Sbjct: 187 YKGKCEMDPVTRRSFCNGKIVGAQHFAKAAIAAGAFNPDVDFASPLDGDGHGSHTAAIAA 246
Query: 280 GNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSL 339
GN+GIPV + GH FG ASGMAPR+ IAVYK LY+ FGG+ +L
Sbjct: 247 GNNGIPVRMHGHEFGKASGMAPRARIAVYKVLYRLFGGYVSDVVAAIDQAVQDGVDILNL 306
Query: 340 SITPNRRPPGI-ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
S+ PN P TF NP D ALLSA KAG+FV QAAGN GP PK++ SFSPWI TV A
Sbjct: 307 SVGPNSPPTATRTTFLNPFDAALLSAVKAGVFVAQAAGNGGPFPKTLVSFSPWITTVAAG 366
Query: 399 SHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQDS 456
DR Y N ++LGN + G+G++P T +K ++LISA AL +CQ
Sbjct: 367 VDDRRYKNHLVLGNGKLLPGLGVSPATHENKSFSLISAADALLGSSATKYSAL--DCQRP 424
Query: 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTP 516
N+ +QG +L+C YS ++ G ++IK+ ETA++L AAG + ++ G + +P P
Sbjct: 425 ELLNKRKIQGKILLCGYSFNYISGTASIKKVSETARSLGAAGFIVAVENSYPGTKFDPVP 484
Query: 517 MKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576
+ MPGI+I +K L+ YYNSS RD + F A A I GL NSAP++
Sbjct: 485 VSMPGILITDVSRTKDLIDYYNSSTIRDWAGRATT-FQATAAIADGLAPTLYNSAPQVAL 543
Query: 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636
+S+RGPD +D DAD++KP+++APGN IWAAW+ GTD + GE FAM+SGTSMAAP
Sbjct: 544 FSSRGPDVKDFSFQDADVLKPDILAPGNLIWAAWAPNGTDEANYAGEGFAMVSGTSMAAP 603
Query: 637 HIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPATPFDM 696
HIAG+AALIKQK DK P+ AQ+ + ATPFD
Sbjct: 604 HIAGIAALIKQKNPKWSPSAIKSALMTTSNTLDKGSHPLRAQQYSTSEIMTLTRATPFDY 663
Query: 697 GSGFVNATASLDPGLVFDASYNDYMSFLCGI-NGSSPVVLNYTGQNCWAYNSTISGA--D 753
GSG VN A+LDPGLV DA++ DY++FLC I + V N TG C + +S + D
Sbjct: 664 GSGAVNPKAALDPGLVLDATHQDYITFLCSIPDVEHSEVSNITGSTC-SSSSKVQQRPYD 722
Query: 754 LNLPSITIARLNQSRTVQRTLTNIAGN-ETYSVGWSAPYGVSMKVSPTHFSIASGEKQVL 812
LN+PSITI++L ++TV+RT+T++A ETY++ ++++VSP ++ G + +
Sbjct: 723 LNIPSITISQLRGTQTVKRTVTSVAAEAETYTIMTRMSPEIALEVSPPALTVLPGASREI 782
Query: 813 NVFFNA-TTSGTAASFGRIGLFGNQGHIVNIPL 844
A + +GT SFG I + G++GH+V IP+
Sbjct: 783 TATLTARSVTGTY-SFGEITMKGDRGHLVRIPV 814
|
|
| TAIR|locus:2059052 SLP3 "AT2G19170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1590 (564.8 bits), Expect = 2.4e-163, P = 2.4e-163
Identities = 348/811 (42%), Positives = 473/811 (58%)
Query: 41 ITA-VYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGY 99
+TA VYIVT++ P + +G +N GF S +++ + + R
Sbjct: 17 VTAEVYIVTMEGDPIISY------KGGEN-GFEATAVESDE--KIDTSSELVTVYAR--- 64
Query: 100 NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVR 159
++ R HD IL F+ Y KLYSY +LINGF+ V+P+QAE L R V +V D+ VR
Sbjct: 65 HLERKHDMILGMLFEEGSYKKLYSYKHLINGFAAHVSPEQAETLRRAPGVRSVDKDWKVR 124
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSH 219
TTHTP+FLGLP W GG++ AGE +VIGF+D+GI P HPSFA P+P H
Sbjct: 125 RLTTHTPEFLGLPTDVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFASHHRLPYGPLP-H 183
Query: 220 FSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA 279
+ G CE CNRK++GA+HFA +A G FN DYASP DGDGHGSHTA++AA
Sbjct: 184 YKGKCEEDPHTKKSFCNRKIVGAQHFAEAAKAAGAFNPDIDYASPMDGDGHGSHTAAIAA 243
Query: 280 GNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSL 339
GN+GIP+ + G+ FG ASGMAPR+ IAVYKALY+ FGGF SL
Sbjct: 244 GNNGIPLRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSL 303
Query: 340 SITPNRRPPGI-ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
S+ PN P TF NP D LL A KAG+FV QAAGN GP PK++ S+SPWI TV AA
Sbjct: 304 SVGPNSPPTTTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 363
Query: 399 SHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQDS 456
DR Y N + LGN ++G+GL+P T ++YTL+SA L + +CQ
Sbjct: 364 IDDRRYKNHLTLGNGKMLAGMGLSPPTRPHRLYTLVSANDVLLDSSVSKYNP--SDCQRP 421
Query: 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTP 516
FN+ LV+GN+L+C YS FV+G ++IK+ TAK+L AAG V ++ G + +P P
Sbjct: 422 EVFNKKLVEGNILLCGYSFNFVVGTASIKKVVATAKHLGAAGFVLVVENVSPGTKFDPVP 481
Query: 517 MKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576
+PGI+I S L+ YYN+S RD T ++ F A I GL SAP++
Sbjct: 482 SAIPGILITDVSKSMDLIDYYNASTSRDW-TGRVKSFKAEGSIGDGLAPVLHKSAPQVAL 540
Query: 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636
+SARGP+ +D DAD++KP+++APG IWAAW GTD + GE FA++SGTSMAAP
Sbjct: 541 FSARGPNTKDFSFQDADLLKPDILAPGYLIWAAWCPNGTDEPNYVGEGFALISGTSMAAP 600
Query: 637 HIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDE-NQSPATPFD 695
HIAG+AAL+KQK D+ G + AQ+ Y+ + ATPFD
Sbjct: 601 HIAGIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRLLQAQQ-YSDTEAVTLVKATPFD 659
Query: 696 MGSGFVNATASLDPGLVFDASYNDYMSFLCGING-SSPVVLNYTGQNCWAYNSTISGADL 754
GSG VN +A+LDPGL+FDA Y DY+ FLC G S+ + NYT C Y+ ++
Sbjct: 660 YGSGHVNPSAALDPGLIFDAGYEDYLGFLCTTPGISAHEIRNYTNTAC-NYDMK-HPSNF 717
Query: 755 NLPSITIARLNQSRTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLN 813
N PSI ++ L ++TV R +TN+A ETY++ ++++V+P ++ G + +
Sbjct: 718 NAPSIAVSHLVGTQTVTRKVTNVAEVEETYTITARMQPSIAIEVNPPAMTLRPGATRTFS 777
Query: 814 VFFNATTSGTAASFGRIGLFGNQGHIVNIPL 844
V + SFG + L G++GH V IP+
Sbjct: 778 VTMTVRSVSGVYSFGEVKLKGSRGHKVRIPV 808
|
|
| TAIR|locus:2126485 AT4G30020 "AT4G30020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1584 (562.7 bits), Expect = 1.0e-162, P = 1.0e-162
Identities = 348/813 (42%), Positives = 476/813 (58%)
Query: 41 ITA-VYIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGY 99
+TA +YIVT++ P + +G N GF S +++ + S+ R
Sbjct: 17 VTAEIYIVTMEGEPIISY------KGGDN-GFEATAVESDE--KIDTTSELVTSYAR--- 64
Query: 100 NISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVR 159
++ R HD +L F Y KLYSY +LINGF+ V+P QAE L R V +V D+ VR
Sbjct: 65 HLERKHDMLLGMLFVEGSYKKLYSYKHLINGFAAHVSPDQAEMLRRAPGVKSVDRDWKVR 124
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSY-PVPS 218
TTHTPQFLGLP W GGY+ AGE +VIGFID+GI P HPSFA + Y P PS
Sbjct: 125 KLTTHTPQFLGLPTDVWPTGGGYDRAGEDIVIGFIDSGIFPHHPSFASHHTTVPYGPHPS 184
Query: 219 HFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVA 278
+ G CE CN K+IGA+HFA +A G FN D+ASP DGDGHGSHTA++A
Sbjct: 185 -YKGKCEEDPHTKISFCNGKIIGAQHFAEAAKAAGAFNPDIDFASPMDGDGHGSHTAAIA 243
Query: 279 AGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXS 338
AGN+GIPV + G+ FG ASGMAPR+ IAVYKALY+ FGGF S
Sbjct: 244 AGNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILS 303
Query: 339 LSITPNRRPPGIA--TFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396
LS+ PN PP TF NP D LL A KAG+FV QAAGN GP PK++ S+SPWI TV
Sbjct: 304 LSVGPNS-PPATTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVA 362
Query: 397 AASHDRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQ 454
AA DR Y N + LGN ++G+GL+P T + Y ++SA L + +CQ
Sbjct: 363 AAIDDRRYKNHLTLGNGKMLAGIGLSPSTRPHRSYKMVSANDVLLGSSGMKYNP--SDCQ 420
Query: 455 DSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNP 514
N+ LV+GN+L+C YS FV G ++IK+ ETAK+L AAG V ++ G + +P
Sbjct: 421 KPEVLNKKLVEGNILLCGYSFNFVAGSASIKKVAETAKHLGAAGFVLVVENVSPGTKFDP 480
Query: 515 TPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574
P +PGI+I S L+ YYN + RD + + + F A I GL+ SAP++
Sbjct: 481 VPSCIPGILITDVSKSMDLIDYYNVTTSRDWMGR-VKDFKAEGSIGDGLEPILHKSAPEV 539
Query: 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMA 634
+SARGP+ +D DAD++KP+++APG+ IW+AWS+ GTD + GE FA++SGTSMA
Sbjct: 540 ALFSARGPNTKDFSFQDADLLKPDILAPGSLIWSAWSANGTDEANYIGEGFALISGTSMA 599
Query: 635 APHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDE-NQSPATP 693
APHIAG+AAL+KQK D+ G P+ AQ+ Y++ + ATP
Sbjct: 600 APHIAGIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRPLQAQQ-YSETETVTLVKATP 658
Query: 694 FDMGSGFVNATASLDPGLVFDASYNDYMSFLCGING-SSPVVLNYTGQNCWAYNSTISGA 752
FD GSG VN +A+LDPGL+FDA Y DY+ FLC G + + N+T C + +
Sbjct: 659 FDYGSGHVNPSAALDPGLIFDAGYEDYIGFLCTTPGIDAHEIKNFTNTPC--NFKMVHPS 716
Query: 753 DLNLPSITIARLNQSRTVQRTLTNIAGNE-TYSVGWSAPYGVSMKVSPTHFSIASGEKQV 811
+ N PSI I+ L +++TV R +TN+A E TY++ ++++VSP ++ +G +
Sbjct: 717 NFNTPSIAISHLVRTQTVTRRVTNVAEEEETYTITSRMEPAIAIEVSPPAMTVRAGASRT 776
Query: 812 LNVFFNATTSGTAASFGRIGLFGNQGHIVNIPL 844
+V + A SFG++ L G++GH V +P+
Sbjct: 777 FSVTLTVRSVTGAYSFGQVTLKGSRGHKVTLPV 809
|
|
| UNIPROTKB|Q0JBB7 Os04g0543700 "Os04g0543700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 311/750 (41%), Positives = 428/750 (57%)
Query: 105 HDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEK-LSRRREVANVVSDFSVRTATT 163
HD L Y KLYSY +L+NGF+++ ++A K LS + V + D + TT
Sbjct: 72 HDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQEDIKMAKMTT 131
Query: 164 HTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGI 223
+TP+++G W GG E AG+GVVIG +DTGIDP++PSF S+ + P P+ F G
Sbjct: 132 YTPRYIGA-NVVWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLS-TSDQAKPPPASFKGT 189
Query: 224 CEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHG 283
C+ FP SCN K++GAR FA + G FN++ YASP+D DGHGSHTAS AAGN
Sbjct: 190 CQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTASTAAGNFH 249
Query: 284 IPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITP 343
P + G++FG+ASG+AP +H+A+YKA Y SFGG+ SLS+ P
Sbjct: 250 TPAISKGYNFGHASGVAPGAHLAIYKAAY-SFGGYMSDVIAAVDKAVEDGVDIISLSLGP 308
Query: 344 NRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI 403
G A+F N ++ LL A KAGI VVQA GN GP S+ SFSPWI +VGA++ DR
Sbjct: 309 TTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGASTTDRK 368
Query: 404 YTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALXXXXXXXDDMYVGECQDSSNFNQ 461
Y SII+GN S GL+P T + MY L A CQD F +
Sbjct: 369 YNKSIIIGNGQVFSCGGLSPSTPGETMYPLALADDVCNTNSTGGSS----NCQDPDVFIR 424
Query: 462 DLVQGNLLICSY-SIRFVLGLSTIKQAFETAKNLSAAGIVFY-MDPFVIGFQLNPT-PMK 518
LVQG ++IC + S + G + +T + + AAG++ + +PT P
Sbjct: 425 SLVQGKVIICMFVSSNYYEG-DFLAGIVDTIQKIGAAGVIITDRSSSDSDIEYHPTFPTS 483
Query: 519 MPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYS 578
+P I+ + D++ LL+YY+ +L RD+ + KFGA IL G +A ++ AP + YS
Sbjct: 484 IPSAIVVNSADAQALLEYYDDNLVRDK-EGSVTKFGATIRILDGRRAIYTREAPVVAEYS 542
Query: 579 ARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI 638
+RGPD +D + AD++KPN++APG+ IW AWS VEFQGES+AM+SGTSMA PH+
Sbjct: 543 SRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSMATPHV 602
Query: 639 AGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPATPFDMGS 698
AG+ ALI+Q+ D++G P+MA+R + ATPFDMG+
Sbjct: 603 AGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMARRDGGVLER----ATPFDMGA 658
Query: 699 GFVNATASLDPGLVFDASYNDYMSFLCGING-SSPVVLNYTGQNCWAYNSTISGADLNLP 757
G +NA ++DPGLVFDA Y DY+ FLC + G VL G C + +DLN P
Sbjct: 659 GAINAARAVDPGLVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWC-SDLNAP 717
Query: 758 SITIARLNQSRTVQRTLTNI-AGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFF 816
S+T+A L SR V R +T++ A NETY AP GV+++VSP F++A G L +
Sbjct: 718 SVTVASLVGSRRVDRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAPGATATLRIVL 777
Query: 817 NATTSGTAASFGRIGLFGNQGHIVNIPLSV 846
N T G SFG + L G++ H V IPL+V
Sbjct: 778 NTTAPGNTFSFGEVVLRGDKKHTVRIPLAV 807
|
|
| TAIR|locus:2027139 ALE1 "AT1G62340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1331 (473.6 bits), Expect = 6.5e-138, Sum P(2) = 6.5e-138
Identities = 306/761 (40%), Positives = 422/761 (55%)
Query: 101 ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160
I +HD IL + Y KLYS+ ++IN +V T QA+KL + + V V D V+
Sbjct: 78 IEEIHDEILGSTLEKGSYTKLYSFKHVINAIAVRTTASQAKKLGKTKGVKAVEEDKGVKL 137
Query: 161 ATTHTPQFLGLPQGAW--IQEGGYETAGEGVVIGFIDTGIDPTHPSFA--DDASEHSYPV 216
TT+TP FL LPQ W I G AGE +VIGF+DTGI+PTHPSFA D + +S +
Sbjct: 138 MTTYTPDFLELPQQVWQKISNEGDRRAGEDIVIGFVDTGINPTHPSFAALDLTNPYSSNL 197
Query: 217 PS-HFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
HFSG CE+ FP GSCN K+I AR F+A A G NSS D SPFD GHGSH A
Sbjct: 198 SRLHFSGDCEIGPFFPPGSCNGKIISARFFSAGARASGALNSSLDILSPFDASGHGSHVA 257
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXX 335
S+AAGN G+PV+V G +G ASGMAPRS IAVYKA+Y S G
Sbjct: 258 SIAAGNAGVPVIVDGFFYGRASGMAPRSRIAVYKAIYPSIGTLVDVIAAIDQAIMDGVDV 317
Query: 336 XXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTV 395
+LS+ P+ P T D+A+L A KAG+FVVQA GN GPSP S+ S+SPW+ V
Sbjct: 318 L-TLSVGPDEPPVDKPTVLGIFDLAMLLARKAGVFVVQAVGNNGPSPSSVLSYSPWVVGV 376
Query: 396 GAASHDRIYTNSIILGNSLTISGVGLA-P--GTDKM-YTLISALHALXXXXXXXDDMY-- 449
A + DR Y +IL T+ GVGL+ P G + + L+ A A+ +
Sbjct: 377 AAGNTDRSYPAPLILDGGQTVQGVGLSGPTLGAPLVQHRLVLAKDAVRTNGSVLQPLTRD 436
Query: 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG 509
+ ECQ NF+ V G+++IC++S F +ST+ +TA+ L G + +P
Sbjct: 437 IEECQRPENFDPAAVFGSIVICTFSDGFYNQMSTVLAITQTARTLGFMGFILIANPRFGD 496
Query: 510 FQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKII-KFGAVACILGGLKANFS 568
+ P PGI+IP+ ++I+L+YY RD T+ + +FGA A I G + F+
Sbjct: 497 YVAEPVIFSAPGILIPTVSAAQIILRYYEEKTFRD--TRGVATQFGARARIGEGRNSVFA 554
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
AP + +S+RGP D+ D++KP+++APG+ IW AWS G SFA++
Sbjct: 555 GKAPVVSRFSSRGPAFIDATRSPLDVLKPDILAPGHQIWGAWSLPSAFDPILTGRSFAIL 614
Query: 629 SGTSMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQ 688
SGTSMA PHIAG+ ALIKQ YD NG I A+ Y +
Sbjct: 615 SGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISAE--YYELSR-L 671
Query: 689 SPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVL-NYTGQNCWAYNS 747
P+ FD G+G VN +LDPGLV A + DY+SFLC + SP + + TG C +
Sbjct: 672 FPSNHFDHGAGHVNPARALDPGLVLPAGFEDYISFLCSLPNISPATIRDATGVLC---TT 728
Query: 748 TISG-ADLNLPSITIARLNQSRTVQRTLTNIAGN-ETYSVGWSAPYGVSMKVSPTHFSIA 805
T+S A+LN PS+TI+ L +S V+R+ +++ ETY P G +++++PT F++
Sbjct: 729 TLSHPANLNHPSVTISALKESLVVRRSFQDVSNKTETYLGSVLPPNGTTVRLTPTWFTVP 788
Query: 806 SGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSV 846
+ Q L++ FN T +FG + L G+ HI+ IPLSV
Sbjct: 789 PQKTQDLDIEFNVTQVLNKFTFGEVVLTGSLNHIIRIPLSV 829
|
|
| UNIPROTKB|Q6ZKR5 OJ1117_F10.11 "Os08g0452100 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 5.3e-72, Sum P(2) = 5.3e-72
Identities = 126/363 (34%), Positives = 182/363 (50%)
Query: 121 LYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGL---PQGAWI 177
+++Y +GFS ++P A L+ VA VV + + ATT +P+FLGL P A +
Sbjct: 78 IHTYSAAFHGFSARMSPAAAAALAEAPGVAAVVPERVRQLATTRSPRFLGLLSSPPSALL 137
Query: 178 QEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNR 237
+ + G +VI IDTGI PTH SF D PVPS + G+C FP SCNR
Sbjct: 138 ADSDF---GSDLVIAIIDTGISPTHRSFHDRGLG---PVPSKWRGVCSSGPGFPPNSCNR 191
Query: 238 KLIGARHFAAS-AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA 296
KL+GAR F+A T G N + + SP D DGHG+HTAS+AAG + P G+ G A
Sbjct: 192 KLVGARFFSAGYEATSGRMNETAEVRSPLDTDGHGTHTASIAAGRYVFPASTLGYARGVA 251
Query: 297 SGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNP 356
+GMAP++ +A YK + G F SLS+ P + +
Sbjct: 252 AGMAPKARLAAYKVCWVG-GCFDSDILAAFDAAVADGVDVVSLSVGGVVVP----YYLDA 306
Query: 357 IDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416
I + A +AGI V +AGN GP ++++ +PW+ TVGA S DR + ++ LGN +
Sbjct: 307 IAIGAFGATEAGIVVSASAGNGGPGGLTVTNVAPWMATVGAGSMDRAFPANVQLGNGQVL 366
Query: 417 SGVGLAPG----TDKMYTLISALHALXXXXXXXDDMYVGECQDSSNFNQDLVQGNLLICS 472
GV + G + KMY L+ A + D C D S + V+G +++C
Sbjct: 367 DGVSVYGGPALQSGKMYELVYAGASSGAASSAADGYSASMCLDGS-LDPAAVRGKIVVCD 425
Query: 473 YSI 475
+
Sbjct: 426 RGV 428
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 858 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-105 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 8e-31 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-29 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 9e-29 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 7e-20 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-19 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 7e-17 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-15 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-15 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-14 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-12 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-11 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-11 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-10 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 7e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-09 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 1e-09 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 4e-09 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 6e-09 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 2e-08 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-08 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 4e-08 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 9e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-06 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-06 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 3e-05 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 5e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 8e-05 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-04 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-04 | |
| cd07491 | 247 | cd07491, Peptidases_S8_7, Peptidase S8 family doma | 5e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 6e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 7e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 8e-04 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.001 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 0.002 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 0.002 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 0.003 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.003 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.003 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 326 bits (838), Expect = e-105
Identities = 115/239 (48%), Positives = 145/239 (60%), Gaps = 7/239 (2%)
Query: 161 ATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHF 220
TT +P FLGLP G AGEG++IG +DTGI P HPSFAD P P +
Sbjct: 4 HTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFAD---VGGGPYPHTW 60
Query: 221 SGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAG 280
G C DF SCN KLIGAR+F+ G FNS +Y SP D DGHG+HTAS AAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 281 NHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS 340
N + V G FG ASG+APR+ IAVYK + G F +D++AAIDQA DGVD+IS S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399
I P + +PI +A L A +AGIFV +AGN+GP ++ + +PW+ TV A++
Sbjct: 181 IGGGSPDP----YEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-31
Identities = 80/259 (30%), Positives = 112/259 (43%), Gaps = 52/259 (20%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+GV + IDTGID THP G N K+ G F
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGG------------------------PGFPNDKVKGGYDF 36
Query: 246 ---AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPR 302
+ + S AS D GHG+H A + AGN G + G G+AP+
Sbjct: 37 VDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPK 88
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+ + YK L G ++AAI+QA DG+D+I+LS+ + P P +A+
Sbjct: 89 ADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDD-----PDAIAIN 143
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420
+A KAG+ VV AAGN+GP+P ++ S +P TVG AS + +G S +
Sbjct: 144 NAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVG-ASTVADVAEADTVGPSSSRGPPT 202
Query: 421 L---------APGTDKMYT 430
APG D M T
Sbjct: 203 SDSAIKPDIVAPGVDIMST 221
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-29
Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 58/231 (25%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G+ + +DTGID HP F G DF + R
Sbjct: 1 GKGITVAVLDTGIDAPHP---------------DFDGRIIRFADFVNTVNGRT------- 38
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+P+D +GHG+H A + AG+ G G G+AP +++
Sbjct: 39 -----------------TPYDDNGHGTHVAGIIAGS-GRASN------GKYKGVAPGANL 74
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSI-TPNRRPPGIATFFNPIDMA 360
K L S G +D++A ID ++ + +++LS+ P G +P+ A
Sbjct: 75 VGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGE----DPLCQA 130
Query: 361 LLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAASHDRIYTNSII 409
+ AGI VV AAGN+GP P +++S SP + TVG A D + I
Sbjct: 131 VERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVG-AVDDNGPHDDGI 180
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 9e-29
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 592 ADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651
A +KP++ APG I AAW+ G D + +GE FA +SGTSMA+PH+AG+AAL+K P
Sbjct: 233 ASTLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 652 FSPSAIASALSTSAT 666
+SP+AI SAL T+A
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 7e-20
Identities = 66/243 (27%), Positives = 91/243 (37%), Gaps = 58/243 (23%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
V + IDTG+DP HP F
Sbjct: 1 VTVAVIDTGVDPDHPDLDG------------------------------------LFGGG 24
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVY 308
++ P DG+GHG+H A + A + V G+AP + +
Sbjct: 25 DGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANNGGGV---------GVAPGAKLIPV 75
Query: 309 KALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA 367
K L G ++D+ AAID AA G D+I+LS+ P + ID AL AK
Sbjct: 76 KVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG-GPGSPPSSALSEAIDYAL---AKL 131
Query: 368 GIFVVQAAGNTGPSPKSMSSF---SPWIFTVGA-ASHDRIYTNSIILGNSLTISGVGLAP 423
G+ VV AAGN GP + + SP + VGA + S G + I+ AP
Sbjct: 132 GVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIA----AP 187
Query: 424 GTD 426
G D
Sbjct: 188 GGD 190
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
A + S+RGP DS +KP++VAPG I + GT +A
Sbjct: 186 VAEADTVGPSSSRGPPTSDS------AIKPDIVAPGVDIMSTAPGSGTG--------YAR 231
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA-TLYDKNGGPIMAQRAYAKPDE 686
MSGTSMAAPH+AG AAL+KQ P +SP+ I +AL +A LYD +G
Sbjct: 232 MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGV------------- 278
Query: 687 NQSPATPFDMGSGFVNATAS 706
G+G V+A +
Sbjct: 279 ---VYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 7e-17
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 59/195 (30%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
GV + IDTGID +HP
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL---------------------------------------- 20
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPRSHIA 306
I G + D DG+GHG+H A +AA ++G+ VV G+AP + +
Sbjct: 21 -NIVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGVGVV----------GVAPEADLY 69
Query: 307 VYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK 366
K L G +D++A I+ A ++G+DII++S+ P + A+ A
Sbjct: 70 AVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALRE-------AIKKAYA 122
Query: 367 AGIFVVQAAGNTGPS 381
AGI VV AAGN+G
Sbjct: 123 AGILVVAAAGNSGNG 137
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 65/251 (25%), Positives = 91/251 (36%), Gaps = 66/251 (26%)
Query: 179 EGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRK 238
+ T G GV + +DTG+DPTHP Y DF
Sbjct: 20 KAWDITGGSGVTVAVVDTGVDPTHPDLLKVKFVLGY--------------DF-------- 57
Query: 239 LIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASG 298
++ D D +GHG+H A + A T + G A G
Sbjct: 58 ----------------VDNDSD---AMDDNGHGTHVAGIIAAA-------TNNGTGVA-G 90
Query: 299 MAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPID 358
+AP++ I K L + G AD+ I AA G +I+LS+ G +
Sbjct: 91 VAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSL-------GGGLGSTALQ 143
Query: 359 MALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI---YTNSIILGNSLT 415
A+ A G+ VV AAGN G S S + P V A D ++N G +
Sbjct: 144 EAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASFSNY---GKWVD 200
Query: 416 ISGVGLAPGTD 426
+S APG
Sbjct: 201 VS----APGGG 207
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632
I Y+S+RGP + +KP++VAPG +I + S G G + MSGTS
Sbjct: 179 GISYFSSRGPTGDG-------RIKPDVVAPGENIVSCRSPGGNPG-AGVGSGYFEMSGTS 230
Query: 633 MAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666
MA PH++G AL+ Q P +P + L +AT
Sbjct: 231 MATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 407 SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQG 466
+ LGN TI G L PG K Y L+ + D+ C S V+G
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKTYPLVYKSAN-------SGDVDASLCLPGSLDP-SKVKG 52
Query: 467 NLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPS 526
+++C G ++ + K AG++ DP + +P + +
Sbjct: 53 KIVLCDRG-----GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVAD-AHVLPAVHV-D 105
Query: 527 PDDSKILLQYYNSS 540
+D +L Y NS+
Sbjct: 106 YEDGTAILSYINST 119
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 62/218 (28%), Positives = 86/218 (39%), Gaps = 57/218 (26%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GV +G ID+GID +HP FA SE
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAGRVSE---------------------------------- 27
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+ + + YAS DGD HG+H A V A G G G+AP + +
Sbjct: 28 ----ASYYVAVNDAGYASNGDGDSHGTHVAGVIAAA------RDG---GGMHGVAPDATL 74
Query: 306 AVYKALYKSFGGFA-ADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFF--------NP 356
+A + F+ AD+ AA D A GV II+ S N ++T + N
Sbjct: 75 YSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNT 134
Query: 357 IDMALLSAAKAGIFVVQAAGNTG-PSPKSMSSFSPWIF 393
+ AL AA AG V AAGN G +P ++ P++
Sbjct: 135 LLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLE 172
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 50/218 (22%)
Query: 190 VIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA 249
+G +DTGID HP + +Y F
Sbjct: 1 TVGVLDTGIDVNHPDLSGRYIGLAYRNGYDFV---------------------------- 32
Query: 250 ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYK 309
++ D D +GHG+H A + A + G+AP + + K
Sbjct: 33 ------DNDPDPTPDDDNNGHGTHVAGIIAAGDN--------NGSGGVGVAPNAKLESVK 78
Query: 310 ALYKSFGGFAADVVAAIDQAA--QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA 367
L S GG +++ AI+ AA + + +I++S+ P PP + ++A+ A
Sbjct: 79 VLPGS-GGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPS-SWSSAIDELAVNGADNK 136
Query: 368 GIFVVQAAGNTGPSPKSMSSFSP---W-IFTVGAASHD 401
G V AAGN G + P I TVGA + +
Sbjct: 137 GSLFVVAAGNGGDYADNNPVSDPASANNIITVGAVTEN 174
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
KP++VAPG +I ++ + SGTSMAAP +AG AAL+ PS +P
Sbjct: 191 KPDIVAPGGNILSSGPGGDLGG-------YDSHSGTSMAAPLVAGAAALLLSANPSLTPE 243
Query: 656 AIASALSTSATLYDKNG 672
+ + L T+AT G
Sbjct: 244 TLRALLVTTATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 6e-13
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAA 635
Y+S+ GP E KP++ APG +I + + G +A++SGTSMA
Sbjct: 190 YFSSWGPTNELYL-------KPDVAAPGGNILSTYPL--------AGGGYAVLSGTSMAT 234
Query: 636 PHIAGLAALIKQKF-PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPF 694
P++AG AAL+ Q SP+ + L+++A + G A
Sbjct: 235 PYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDG----------TSALPDLAPVA 284
Query: 695 DMGSGFVNATASLD 708
G+G VNA +L
Sbjct: 285 QQGAGLVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 62/275 (22%), Positives = 97/275 (35%), Gaps = 90/275 (32%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+ G GV + +DTGI TH F A DF G +
Sbjct: 20 DSSTGSGVDVYVLDTGIRTTHVEFGGRAI---------------WGADFVGGDPDS---- 60
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
D +GHG+H A G G+A
Sbjct: 61 ------------------------DCNGHGTHVAGTVGGK--------------TYGVAK 82
Query: 302 RSHI-AVYKALYKSFGGFAADVVAAIDQAAQDGVD-----IISLSITPNRRPPGIATFFN 355
++++ AV K L + G + ++A ++ A D + ++S+
Sbjct: 83 KANLVAV-KVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLG--------GGAST 133
Query: 356 PIDMALLSAAKAGIFVVQAAGNTG--PSPKSMSSFSPWIFTVGA-ASHDRI--YTNSIIL 410
+D A+ +A AG+ VV AAGN+ S +S +P TVGA S D ++N
Sbjct: 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPAS-APEAITVGATDSDDARASFSNY--- 189
Query: 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
G+ + I APG D I + ++ T T
Sbjct: 190 GSCVDI----FAPGVD-----ILSAWIGSDTATAT 215
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 65/242 (26%), Positives = 94/242 (38%), Gaps = 42/242 (17%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+GV + +DTGID THP+ G C F G C K+ G F
Sbjct: 12 GKGVKVAVVDTGIDYTHPAL----------------GGC-----FGPG-C--KVAGGYDF 47
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
N P D GHG+H A + A N +G+AP + +
Sbjct: 48 VGDDYDGT--NPPVPDDDPMDCQGHGTHVAGIIAANPNAY---------GFTGVAPEATL 96
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
Y+ S ++AA +A +DG D+I+ S+ P G + +P +
Sbjct: 97 GAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLG---GPSGWS--EDPWAVVASRIV 151
Query: 366 KAGIFVVQAAGNTGPS-PKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPG 424
AG+ V AAGN G P SS + + AS D ++ S N L + APG
Sbjct: 152 DAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVDSYFS-SWGPTNELYLKPDVAAPG 210
Query: 425 TD 426
+
Sbjct: 211 GN 212
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 39/215 (18%)
Query: 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFA-DDASEHSYPVPSHFSGICEVTRDFPSG 233
W +GGY+ GEG+V+ ID+G+DPTH +F DD S+ Y E +
Sbjct: 2 LW-DKGGYK--GEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEF------EAKKKKAGI 52
Query: 234 S----CNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVT 289
N K+ A ++A +++ D DG HG H A + AGN
Sbjct: 53 GYGKYYNEKVPFAYNYA---------DNNDDILDEDDGSSHGMHVAGIVAGNGD-----E 98
Query: 290 GHHFGNASGMAPRSHIAVYKAL-YKSFGG-FAADVVAAIDQAAQDGVDIISLSITPNRRP 347
+ G+AP + + K G + AI+ A + G D+I++S+
Sbjct: 99 EDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG----- 153
Query: 348 PGIATFFNPIDM---ALLSAAKAGIFVVQAAGNTG 379
A F + D A+ A +AG+ VV AAGN G
Sbjct: 154 -STAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES 624
A FS+ + P D + KP++ APG +++A
Sbjct: 165 AWFSSFGSSGASLVSAPDSPPD------EYTKPDVAAPGVDVYSARQG------ANGDGQ 212
Query: 625 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+ +SGTSMAAPH+AG+AAL+ P SP I AL+ +A
Sbjct: 213 YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
+S +S+ GP+ E L APG I + + +A +
Sbjct: 157 DSNNNRASFSSTGPEVE-------------LAAPGVDILSTYP----------NNDYAYL 193
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661
SGTSMA PH+AG+AAL+ K P + + + AL
Sbjct: 194 SGTSMATPHVAGVAALVWSKRPELTNAQVRQAL 226
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 65/264 (24%), Positives = 88/264 (33%), Gaps = 83/264 (31%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
VV+ IDTG+D HP D+ N I
Sbjct: 3 DVVVAVIDTGVDYNHPDLKDNMWV------------------------NPGEIP------ 32
Query: 248 SAITRGIFNSSQDY-------------ASPFDGDGHGSHTASV--AAGNHGIPVVVTGHH 292
GI + Y P D +GHG+H A + A GN+GI +
Sbjct: 33 ---GNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNGIGIA----- 84
Query: 293 FGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIAT 352
G+A I K L G +D + AID A G II+ S G
Sbjct: 85 -----GVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSW-------GGGG 132
Query: 353 FFNPIDMALLSAAKAGIFVVQAAGNTG---------PSPKSMSSFSPWIFTVGAASH-DR 402
+ A+ A AGI V AAGN G P+ S I +V A D
Sbjct: 133 PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPA----SYDLDNIISVAATDSNDA 188
Query: 403 IYTNSIILGNSLTISGVGLAPGTD 426
+ + S ++ ++ APG D
Sbjct: 189 LASFSNYGKKTVDLA----APGVD 208
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
++ APG I ++ ++ G +A +SGTSMAAP +AG+AAL+ P +P+
Sbjct: 181 GVDIAAPGGDILSSPTTGG--------GGYATLSGTSMAAPIVAGVAALLLSANPDLTPA 232
Query: 656 AIASALSTS 664
+ +AL ++
Sbjct: 233 QVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
L APG +I++ G + +SGTS AAPH++G AAL+ QKFP + +
Sbjct: 208 LAAPGENIYSTDPDGGNG--------YGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVR 259
Query: 659 SALSTSAT 666
L T+AT
Sbjct: 260 QTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 40/150 (26%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+ + ++ +S+ GP P+ LD +KP++ APG +I++ ++
Sbjct: 228 NPNGGQMSGFSSWGPTPD---LD----LKPDITAPGGNIYST----------VNDNTYGY 270
Query: 628 MSGTSMAAPHIAGLAALIKQ----KFPSFSPSAIASAL-----STSATLYDKNGGPIMAQ 678
MSGTSMA+PH+AG +AL+KQ K+P S + + +T+ D
Sbjct: 271 MSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE------- 323
Query: 679 RAYAKPDENQSPATPFDMGSGFVNATASLD 708
+ ++ +P G+G ++ ++
Sbjct: 324 -------DTKTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 49/196 (25%), Positives = 67/196 (34%), Gaps = 46/196 (23%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
V + ID+GIDP HP + S +S ++ +
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYS--------------KNLVPKGGYDGKEAGETGDIN 47
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVY 308
I D GHG+ A A N GN G+AP I Y
Sbjct: 48 DIV--------------DKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSY 81
Query: 309 KALYKSFGGFAADVVAAIDQAAQDGVDIISLS-----ITPNRRPPGIATFFNPIDMALLS 363
+ ++ ++ AI AA DGVD+I+LS I +N A+
Sbjct: 82 RVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVE-YNAYKKAINY 140
Query: 364 AAKAGIFVVQAAGNTG 379
A G VV AAGN G
Sbjct: 141 AKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 560 LGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVE 619
G S+++ + +S+RGP D +KP+LVAPG I +A S G
Sbjct: 187 NGEGGLGQSDNSDTVASFSSRGP------TYDG-RIKPDLVAPGTGILSARSGGGGIGDT 239
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKF------PSFSPSA 656
++ SGTSMA P +AG AAL++Q F F+PSA
Sbjct: 240 SD-SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSA 281
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
+ + +S+RGP +KP++ APG +I +A G +
Sbjct: 182 DRNDVLADFSSRGPSTYGR-------IKPDISAPGVNIRSAVP----------GGGYGSS 224
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFS 653
SGTSMAAPH+AG+AAL+ PS
Sbjct: 225 SGTSMAAPHVAGVAALLWSANPSLI 249
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 66/287 (22%), Positives = 100/287 (34%), Gaps = 90/287 (31%)
Query: 186 GEGVVIGFIDTGIDPTHPSFAD-------DASEHSYPVPSHFSGICEVTRDFPSGSCNRK 238
G G+V+ IDTG+D THP+ + +++H Y
Sbjct: 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADHDY------------------------ 36
Query: 239 LIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASG 298
F+ + P+D +GHG+HT GN G G G
Sbjct: 37 --------------NWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGD---------GQQIG 73
Query: 299 MAPRSH-IAVYKALYKSFGGFAADVVAAID------QAAQDGVDIISLSITPNRRP---- 347
+AP + IA +AL GG AD + +A + D P+ P
Sbjct: 74 VAPGARWIAC-RAL-DRNGGNDADYLRCAQWMLAPTDSAGNPAD-------PDLAPDVIN 124
Query: 348 ------PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAA 398
G + P A AGIF V AAGN GP ++++ P F VGA
Sbjct: 125 NSWGGPSGDNEWLQPAVAAW---RAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGAT 181
Query: 399 SHDRIYTNSIILGNSLTISGVG---LAPGTDKMYTLISALHALNNNT 442
+ + + G S T + APG + + + ++ T
Sbjct: 182 DRNDVLADFSSRGPS-TYGRIKPDISAPGVNIRSAVPGGGYGSSSGT 227
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
++ APG I +AW T A +SGTSMAAPH+AGLAA + P SP+ +
Sbjct: 194 DIFAPGVDILSAWIGSDTA--------TATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEV 245
Query: 658 ASALSTSAT 666
+ L AT
Sbjct: 246 KARLLNLAT 254
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
L APG I + G + MSGTSMA PH+AG AAL+ P+ + + I
Sbjct: 202 LAAPGVDILSTSP----------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIK 251
Query: 659 SALSTSAT 666
A+ +SA
Sbjct: 252 DAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 22/105 (20%)
Query: 562 GLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKP--NLVAPGNSIWAAWSSLGTDSVE 619
G +A++SN P + D+ P + + N S+ GT S
Sbjct: 201 GQRASYSNYGPAV------------------DVSAPGGDCASDVNGDGYPDSNTGTTSPG 242
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664
G ++ + GTSMAAPH+AG+AAL+K PS +P+ I S L ++
Sbjct: 243 --GSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 62/296 (20%), Positives = 94/296 (31%), Gaps = 87/296 (29%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G ++G DTG+D H F D P+ T F +RK++
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYD---------PNFNK-----TNLF-----HRKIV----- 41
Query: 246 AASAITRGIFNSSQDYA-SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSH 304
+ + D DGHG+H A + AG G+AP++
Sbjct: 42 -----------RYDSLSDTKDDVDGHGTHVAGIIAGKG-----NDSSSISLYKGVAPKAK 85
Query: 305 IAVYKALYKSFGGFA-ADVVAAIDQAAQDGVDIISLSITPNRRP--PGIA------TFFN 355
+ S + D+ G I S S +A + N
Sbjct: 86 LYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNN 145
Query: 356 PIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPW----IFTVGAASHDRIYTNSIILG 411
P D+ V +AGN G S + SP + TVGA+++ + LG
Sbjct: 146 P-DIL----------FVFSAGNDGNDG-SNTIGSPATAKNVLTVGASNNPSVSNGEGGLG 193
Query: 412 NSLTISGVG-----------------LAPGTDKMYTLISALHALNNNTTTTDDMYV 450
S V +APGT ++SA T+D Y
Sbjct: 194 QSDNSDTVASFSSRGPTYDGRIKPDLVAPGTG----ILSARSGGGGIGDTSDSAYT 245
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-09
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 92 ISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVAN 151
+S + H S A LYSY + NGF+ +T ++AEKL + +V
Sbjct: 10 VSKAAVFSSHKSWHASSKEEAAGASI---LYSYKHGFNGFAAKLTEEEAEKLRKHPDVEY 66
Query: 152 VVSDFSVRTA 161
V D V
Sbjct: 67 VEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 42/215 (19%), Positives = 68/215 (31%), Gaps = 55/215 (25%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
GV + +DTG+D HP A ++ DF
Sbjct: 1 GVTVAVLDTGVDADHPDLAGRVAQ---------------WADFDE--------------- 30
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
N FD GHG+H + G G G G+AP + +
Sbjct: 31 --------NRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLH 73
Query: 308 YKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPG-IATFFNPIDMALLSAAK 366
K L G + ++A ++ A + D++S+S+ + + +
Sbjct: 74 GKVLDDGGGSLSQ-IIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALS------NQ 126
Query: 367 AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
G V +AGN G + +VGA D
Sbjct: 127 TGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 56/242 (23%), Positives = 77/242 (31%), Gaps = 86/242 (35%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GV + +DTGID THP+FA G T+ F G
Sbjct: 7 GAGVRVAVLDTGIDLTHPAFA---------------GRDITTKSFVGGE----------- 40
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAG--NHGIPVVVTGHHFGNASGMAPRS 303
DG GHG+H A G G G+A +
Sbjct: 41 -----------------DVQDGHGHGTHCAGTIFGRDVPGPRY-----------GVARGA 72
Query: 304 HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMA--- 360
IA+ + GG ++A I A +G D+IS+S+ + PG+ P +A
Sbjct: 73 EIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADF--PGLVDQGWPPGLAFSR 130
Query: 361 --------------------LLSAAKAGIFVVQAAGN-----TGPSPKSMSSFSPWIFTV 395
+A G +V AAGN G P + P V
Sbjct: 131 ALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGV 190
Query: 396 GA 397
A
Sbjct: 191 AA 192
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 24/109 (22%)
Query: 597 PNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSA 656
++ APG I +A G S MSGTSMA PH+AG+AAL + P A
Sbjct: 213 VDIAAPGVDIVSAAPGGGYRS----------MSGTSMATPHVAGVAALWAEALPKAGGRA 262
Query: 657 IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATA 705
+A+ L A+ A+ + D G G A A
Sbjct: 263 LAALL--------------QARLTAARTTQFAPGLDLPDRGVGLGLAPA 297
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 61/266 (22%), Positives = 92/266 (34%), Gaps = 68/266 (25%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
VV+ IDTG+D HP + G
Sbjct: 1 VVVAIIDTGVDLNHPDLSGKP-------------------KLVPG--------------- 26
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAA--GNHGIPVVVTGHHFGNASGMAPRSHIA 306
+N + D DGHG+ A VAA GN+G+ V +G+AP + +
Sbjct: 27 ------WNFVSNNDPTSDIDGHGTACAGVAAAVGNNGLGV----------AGVAPGAKLM 70
Query: 307 VYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK 366
+ + +D+ AI AA +G D+IS S G + I A+ +AA
Sbjct: 71 PVRIADSLGYAYWSDIAQAITWAADNGADVISNSW-------GGSDSTESISSAIDNAAT 123
Query: 367 -----AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421
G V+ AAGN+G S S + +P + V A + + GN + +
Sbjct: 124 YGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSNDARASYSNYGNYVDLV---- 179
Query: 422 APGTDKMYTLISALHALNNNTTTTDD 447
APG T A +
Sbjct: 180 APGVGIWTTGTGRGSAGDYPGGGYGS 205
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 36/146 (24%), Positives = 50/146 (34%), Gaps = 36/146 (24%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADI--------MKPNLVAPGNSIWAAWSSLGTDSVE 619
+ + S P S D I KP++ AP GT +
Sbjct: 154 VDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVN-------GTVDGD 206
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQR 679
G+ GTS AAPH AG+AAL+ P +P+ I AL ++A
Sbjct: 207 --GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTAL------------- 251
Query: 680 AYAKPDENQSPATPFDMGSGFVNATA 705
+ P GSG V+A
Sbjct: 252 ------DMGEPGYDNASGSGLVDADR 271
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
I +S RGP + +KP++ APG +I A G + SGTS+
Sbjct: 359 IAIFSGRGPTRDG-------RIKPDIAAPGVNILTASP----------GGGYTTRSGTSV 401
Query: 634 AAPHIAGLAALIKQ------KFPSFSPSAIASALSTSAT 666
AA +AG AL+ Q P I + L A
Sbjct: 402 AAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 601 APG-NSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS-FSPSAIA 658
APG +I + L D G ++ +SGTSMAAPH++G+AAL+ KFP F+P I
Sbjct: 212 APGVGTILSTVPKLDGD----GGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIR 267
Query: 659 SALSTS 664
L S
Sbjct: 268 KLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
+ APG I + +A MSGTSMA PH+AG+AAL+ + P S S +
Sbjct: 201 VSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVR 249
Query: 659 SALSTSA 665
AL +A
Sbjct: 250 DALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 46/196 (23%)
Query: 270 HGSHTASV--AAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327
HG+H A A N+G+ V +G+A + I + L K GG +D+V +
Sbjct: 73 HGTHVAGTIAAVTNNGVGV----------AGVAWGARILPVRVLGKC-GGTLSDIVDGMR 121
Query: 328 QAA---QDGV-------DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGN 377
AA GV +I+LS+ + AT N I+ G+ VV AAGN
Sbjct: 122 WAAGLPVPGVPVNPNPAKVINLSLGGDGACS--ATMQNAINDV----RARGVLVVVAAGN 175
Query: 378 TGPSPKSMSSFSPW----IFTVGAASHDRI---YTNSIILGNSLTISGVGLAPGTDKMYT 430
G S S +P + VGA Y+N G ++ +S APG D
Sbjct: 176 EG---SSASVDAPANCRGVIAVGATDLRGQRASYSN---YGPAVDVS----APGGDCASD 225
Query: 431 LISALHALNNNTTTTD 446
+ + +N TT+
Sbjct: 226 VNGDGYPDSNTGTTSP 241
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 37/135 (27%)
Query: 186 GEGVVIGFIDTGIDPTHPSFAD-DASEHSYPVPSHFSGICEVTR-------DFPSGSCNR 237
G+GV++G IDTGID HP F + D + TR P G
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGT----------------TRILYIWDQTIPGGPPPG 46
Query: 238 KLIGARHFAASAITRGIFNSSQDYAS--PF-DGDGHGSHTASVAAGNHGIPVVVTGHHFG 294
G + I +S + P D +GHG+H A +AAGN G +
Sbjct: 47 GYYGGGEYTEEIINA--ALASDNPYDIVPSRDENGHGTHVAGIAAGN--------GDNNP 96
Query: 295 NASGMAPRSHIAVYK 309
+ G+AP + + V K
Sbjct: 97 DFKGVAPEAELIVVK 111
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
++ +S+ GP + +KP+++A G I+ D +
Sbjct: 181 DANGNKASFSSIGPTADGR-------LKPDVMALGTGIYVI----NGDG------NITYA 223
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+GTS + P IAGL A + Q P+++ I A+ SA
Sbjct: 224 NGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.8 bits (115), Expect = 1e-05
Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 10/195 (5%)
Query: 586 DSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
SF +D ++ APG +I S +++ G + +SGTSMAAPH++G+AAL+
Sbjct: 319 ASFSNDGSPTGVDIAAPGVNIL---SLSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALV 375
Query: 646 KQKFPSF-SPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704
P+ +P+ + + + T+A L +G + AT G+ N T
Sbjct: 376 LSANPNELTPAQVRNLIVTTAGLTPLSGV---DNLVGGGLANLDAAATDVAGGTLPANGT 432
Query: 705 ASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSITIARL 764
S + + L G+ P + G + + A L + A
Sbjct: 433 GSSQGAVEAPGTLALLTPAL---GGTVPAAVAVAGTVTVGLGTAGTIALAALGGASAALA 489
Query: 765 NQSRTVQRTLTNIAG 779
+ L +I
Sbjct: 490 RREARGDLALNDIGT 504
|
Length = 508 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
++ +S+RGP A KP+L A G WA L + E+F + GTSM
Sbjct: 221 VVSWSSRGPSI-------AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSM 273
Query: 634 AAPHIAGLAAL----IKQKF--PSFSPSAIASALSTSA 665
A P AG AAL +K+K + P + + L ++A
Sbjct: 274 ATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.2 bits (111), Expect = 3e-05
Identities = 51/226 (22%), Positives = 77/226 (34%), Gaps = 53/226 (23%)
Query: 177 IQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236
+ G G+GV + IDTG+D +HP A
Sbjct: 132 LVANGAGLTGKGVTVAVIDTGVDASHPDLAG----------------------------- 162
Query: 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNA 296
SA+ G F D +GHG+H A A V +
Sbjct: 163 -----------SAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAA-------VIFDNGAGV 204
Query: 297 SGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDG--VDIISLSITPNRRPPGIATF 353
+G+AP + + + K L G G +DV I+ AA G D+I+LS+ +
Sbjct: 205 AGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPAL 264
Query: 354 FNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399
+ + A A G+ +V AAGN G + P +
Sbjct: 265 GDALAAA---ANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVI 307
|
Length = 508 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPG--------NSIWAAWSSLGT 615
+ ++ A A S +KP++VA G + SL T
Sbjct: 181 DDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLT 240
Query: 616 DSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
G F + GTS AAP A LAA + + P SP I
Sbjct: 241 TLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETI 282
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
A G I A +V SG S AAPH+ G+ AL+ + P + +
Sbjct: 165 FSADGVDIIAPAPHGRYLTV----------SGNSFAAPHVTGMVALLLSEKPDIDANDLK 214
Query: 659 SALSTSAT 666
L A
Sbjct: 215 RLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 53/186 (28%), Positives = 74/186 (39%), Gaps = 33/186 (17%)
Query: 259 QDYASPFDG----DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI--------A 306
D+ DG DGHG+ A + AG G G SG+AP + I A
Sbjct: 38 GDFVGSGDGTDDCDGHGTLVAGIIAGRPGEG---DGF-----SGVAPDARILPIRQTSAA 89
Query: 307 VYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS-ITPNRRPPGIATFFNPIDMALLSAA 365
S G + AI +AA G D+I++S + G + A+ A
Sbjct: 90 FEPDEGTSGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADD--PELGAAVRYAL 147
Query: 366 KAGIFVVQAAGNTGPSPKSMSSFSP--WIFTVGAASHDRIYTNSIILGNSLTISG--VGL 421
G+ VV AAGNTG + + P + + S DR T S S ++ G V L
Sbjct: 148 DKGVVVVAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDRDGTPS-----SFSLPGPWVDL 202
Query: 422 -APGTD 426
APG +
Sbjct: 203 AAPGEN 208
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 61/248 (24%), Positives = 84/248 (33%), Gaps = 89/248 (35%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
G+ I ID G H +FA F N +++G F
Sbjct: 1 GITIAVIDAGFPKVHEAFA-----------------------FKHLFKNLRILGEYDF-- 35
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
+ NS+ + D HG+ S AG P G G AP A
Sbjct: 36 ------VDNSNNTN---YTDDDHGTAVLSTMAGY--TP--------GVMVGTAPN---AS 73
Query: 308 YKALYKSFGGFAADV-----------VAAIDQAAQDGVDIISLSITPNRRPPGIATFFNP 356
Y L ++ DV VAA + A GVDIIS S+ G TF NP
Sbjct: 74 Y-YLART-----EDVASETPVEEDNWVAAAEWADSLGVDIISSSL-------GYTTFDNP 120
Query: 357 I------DM----ALLS-----AAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAA 398
DM + +S AA G+ VV +AGN G + + + +VGA
Sbjct: 121 TYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAV 180
Query: 399 SHDRIYTN 406
+ +
Sbjct: 181 DANGNKAS 188
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 322 VVAAIDQAAQDGVDIISLSIT---PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAA--- 375
AI+ A + VDIIS+S T P I N ++ A+ A GI + +A
Sbjct: 91 AAKAIEAAVEKKVDIISMSWTIKKPEDNDNDI----NELENAIKEALDRGILLFCSASDQ 146
Query: 376 GNTGPSPKSMSSFSPWIFTVGAASHDR 402
G + IF +GAA D
Sbjct: 147 GAFTGDTYPPPAARDRIFRIGAADEDG 173
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
L APG +I SL G+ A SGTS AAP ++G AAL++ +FP + + +
Sbjct: 202 LAAPGENI----VSLSPG-----GDGLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVR 252
Query: 659 SALSTSA 665
+ +A
Sbjct: 253 RRIEATA 259
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 55/264 (20%), Positives = 86/264 (32%), Gaps = 43/264 (16%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
T G G+++ +DTG+D THP + G +
Sbjct: 7 TGGPGIIVAVVDTGVDGTHPDLQGNGD----------------------GDGYDPAVNGY 44
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPR 302
+F N G GHG+H A +AA N+ V G G+AP
Sbjct: 45 NFV--------PNVGDIDNDVSVGGGHGTHVAGTIAAVNNNG-GGVGGIAGAG--GVAPG 93
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS---ITPNRRPPGIA-TFFNPID 358
I + + V AAI AA +G I+ S P + F I+
Sbjct: 94 VKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIE 153
Query: 359 MALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISG 418
A S GI V A + + +++ P + V A + + G + I+
Sbjct: 154 NAGGSPLDGGIVVFSAGNSYTDEHRFPAAY-PGVIAVAALDTNDNKASFSNYGRWVDIA- 211
Query: 419 VGLAPGTDKMYTLISALHALNNNT 442
APG + + + L
Sbjct: 212 ---APGVGTILSTVPKLDGDGGGN 232
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 21/177 (11%)
Query: 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK 313
+F + HG+H AS+ G V G+AP +
Sbjct: 36 LFTYAAAACQDGGASAHGTHVASLIFGQPCSSV----------EGIAPLCRGLNIPIFAE 85
Query: 314 SFGGFA-ADVVAAIDQAAQDGVDIISLS---ITPNRRPPGIATFFNPIDMALLSAAKAGI 369
G + D+ AI+ A + G II++S +T I N + M + +
Sbjct: 86 DRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILA--NAVAM----CQQNNV 139
Query: 370 FVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426
+V AAGN G + + + P + VGA D + G G+ LAPG +
Sbjct: 140 LIVAAAGNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNWGADYRKKGI-LAPGEN 195
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653
L APG +I++ F S+ ++GTSMAAPH+A +A+LI PS S
Sbjct: 534 LAAPGTNIYST----------FPKNSYRKLNGTSMAAPHVAAIASLILSINPSLS 578
|
Length = 639 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 47/194 (24%), Positives = 66/194 (34%), Gaps = 62/194 (31%)
Query: 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248
V +G IDTGID HP +A
Sbjct: 1 VRVGMIDTGIDTAHP----------------------------------------ALSAV 20
Query: 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVY 308
I R F A HG+ AS+ AG G A V+
Sbjct: 21 VIARLFFAGPGAPAPSA----HGTAVASLLAGA--------GAQRPGLLPGADLYGADVF 68
Query: 309 KALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA- 367
G A + A+D A+ GV ++++S+ PP N + A ++AA A
Sbjct: 69 GRAGGGEGASALALARALDWLAEQGVRVVNISLAG---PP------NALLAAAVAAAAAR 119
Query: 368 GIFVVQAAGNTGPS 381
G+ +V AAGN GP+
Sbjct: 120 GMVLVAAAGNDGPA 133
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 623 ESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+ + + SGTS AAP +AG+ AL+ Q P SP S L+ +A
Sbjct: 240 DGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 34/133 (25%)
Query: 536 YYNSSLERD-EVTKKIIKFGAVACILG-GLKANFSNSAPKIMYYSARGPDPEDSFLDDAD 593
+ N + E I GA + L ANFSN Y + D
Sbjct: 191 FPNDYDKNGGEPANNFITVGASSKKYENNLVANFSN-------YGKKNVD---------- 233
Query: 594 IMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653
+ APG I++ + SGTSMAAP ++G+AALI +P+ +
Sbjct: 234 -----VFAPGERIYSTTP----------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLT 278
Query: 654 PSAIASALSTSAT 666
+ + S
Sbjct: 279 AKEVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 51/259 (19%), Positives = 81/259 (31%), Gaps = 76/259 (29%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
GV + ID+G+D HP + A + + I V+
Sbjct: 1 GVRVAVIDSGVDTDHPDLGNLALDG---EVTIDLEIIVVS-------------------- 37
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
A D DGHG+ A + AP + I
Sbjct: 38 --------------AEGGDKDGHGTACAGIIKK------------------YAPEAEIGS 65
Query: 308 YKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA-K 366
K L + + + A+ ++ + I++LS+ G P+ LL A K
Sbjct: 66 IKILGEDGRCNSFVLEKALRACVENDIRIVNLSLG------GPGDRDFPLLKELLEYAYK 119
Query: 367 AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426
AG +V AA N +SF P + V + + D + I A G D
Sbjct: 120 AGGIIVAAAPNNNDIGTPPASF-PNVIGVKSDTADD-------PKSFWYIYVEFSADGVD 171
Query: 427 KMYTLISALHALNNNTTTT 445
+I+ A + T
Sbjct: 172 ----IIAP--APHGRYLTV 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
+ APG +W A G + +SGTS AAP + AL+ Q P +P
Sbjct: 168 DFAAPGVDVWVAAP----------GGGYRYVSGTSFAAPFVTAALALLLQASPL-APDDA 216
Query: 658 ASALSTSA 665
+ L+ +A
Sbjct: 217 RARLAATA 224
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 627 MMSGTSMAAPHIAGLAALI----KQKFPSFSPSAIASALSTSAT 666
+M+GTSM++P+ G AL+ K + ++P ++ AL +A
Sbjct: 367 LMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 622 GESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
+A M GTS+AAP ++G ALI K P P
Sbjct: 251 EGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPP 284
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.9 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.88 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.71 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 99.22 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.68 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.52 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.44 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.38 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.32 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.94 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 97.92 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 97.79 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.77 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.72 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.71 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.7 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.63 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.61 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.58 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.54 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.5 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.48 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.43 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.38 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.12 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.27 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.98 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 94.76 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 94.49 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 94.09 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 93.95 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 93.83 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 93.46 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 93.35 | |
| PF07718 | 140 | Coatamer_beta_C: Coatomer beta C-terminal region; | 91.78 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 91.56 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 89.85 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 89.34 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 87.91 | |
| TIGR02745 | 434 | ccoG_rdxA_fixG cytochrome c oxidase accessory prot | 83.06 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 81.97 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=442.06 Aligned_cols=306 Identities=51% Similarity=0.816 Sum_probs=253.5
Q ss_pred ccccCCCCCcccCCCcccccc-cCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCC
Q 003005 158 VRTATTHTPQFLGLPQGAWIQ-EGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236 (858)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~w~~-~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 236 (858)
++++.++++.+++++. .|.. .+..+++|+||+|||||||||++||+|.+... .++...|.+.|..+..+....++
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGG---GPYPHTWPGDCVTGEDFNPFSCN 76 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCC---CCCCCCCCCcccCCCCcCccCcC
Confidence 3567788899999987 8876 55668999999999999999999999998765 66778899999988888778899
Q ss_pred ceeeeeeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC
Q 003005 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG 316 (858)
Q Consensus 237 ~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~ 316 (858)
+|+++.++|.++.......+...+...+.|..||||||||||||+........|...+.+.||||+|+|+.+|+++....
T Consensus 77 ~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~ 156 (307)
T cd04852 77 NKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG 156 (307)
T ss_pred CeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC
Confidence 99999999987643322222334456678899999999999999876544444555567889999999999999987566
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEe
Q 003005 317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396 (858)
Q Consensus 317 ~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVg 396 (858)
+..+++++++++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|......++..|++|+||
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 888999999999999999999999998643 2245788888889999999999999999987777788888899888
Q ss_pred ecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccc
Q 003005 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR 476 (858)
Q Consensus 397 A~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~ 476 (858)
|++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 631
Q ss_pred cccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeee
Q 003005 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (858)
Q Consensus 477 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (858)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhH
Q 003005 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (858)
Q Consensus 557 ~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 636 (858)
+||||+|||.+|++++............+.|..++|||||||
T Consensus 236 --------------------------------------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP 277 (307)
T cd04852 236 --------------------------------------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASP 277 (307)
T ss_pred --------------------------------------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHH
Confidence 356999999999999864322222224568999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 637 ~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
+|||++|||+|++|+|+|+|||++|++||+
T Consensus 278 ~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 278 HVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999995
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=455.11 Aligned_cols=285 Identities=22% Similarity=0.281 Sum_probs=208.8
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCcee--eeeeecchhhhhcCccCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKL--IGARHFAASAITRGIFNSSQD 260 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv--~g~~~~~~~~~~~~~~~~~~~ 260 (858)
+.+|+||+|||||||||++||||.++.+.+..... |.++.....|+.+ +.+++|.+ +
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~---------GrdgiDdD~nG~vdd~~G~nfVd------------~ 370 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELH---------GRKGIDDDNNGNVDDEYGANFVN------------N 370 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhccccccccc---------CccccccccCCcccccccccccC------------C
Confidence 46899999999999999999999987541111100 1111111111111 22344443 2
Q ss_pred CCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEc
Q 003005 261 YASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS 340 (858)
Q Consensus 261 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S 340 (858)
...|.|.+||||||||||||..+++ .++.||||+|+|+++|+++..+.+..++++.||+||++.|++|||||
T Consensus 371 ~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmS 442 (639)
T PTZ00262 371 DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGS 442 (639)
T ss_pred CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEec
Confidence 3456889999999999999975332 34679999999999999987556889999999999999999999999
Q ss_pred cCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------CCC----CCCceEEEeecccCc
Q 003005 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--------------MSS----FSPWIFTVGAASHDR 402 (858)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVgA~~~~~ 402 (858)
||+.. +...+..|+++|.++|++||+||||++..... +|+ ..++||+|||++.+.
T Consensus 443 lG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~ 515 (639)
T PTZ00262 443 FSFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK 515 (639)
T ss_pred cccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC
Confidence 99642 33578899999999999999999999864321 221 134566666543210
Q ss_pred eeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcc
Q 003005 403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS 482 (858)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~ 482 (858)
.
T Consensus 516 ~------------------------------------------------------------------------------- 516 (639)
T PTZ00262 516 N------------------------------------------------------------------------------- 516 (639)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecc
Q 003005 483 TIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG 562 (858)
Q Consensus 483 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 562 (858)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHH
Q 003005 563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642 (858)
Q Consensus 563 ~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 642 (858)
..-.++.||++|. .++||+|||++|+|+. +++.|..++|||||||||||++
T Consensus 517 -------~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~----------p~g~Y~~~SGTSmAAP~VAGvA 567 (639)
T PTZ00262 517 -------NQYSLSPNSFYSA------------KYCQLAAPGTNIYSTF----------PKNSYRKLNGTSMAAPHVAAIA 567 (639)
T ss_pred -------CcccccccccCCC------------CcceEEeCCCCeeecc----------CCCceeecCCCchhHHHHHHHH
Confidence 0001344566652 2349999999999998 4568999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccc-cccccccccCCCCee
Q 003005 643 ALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMG-SGFVNATASLDPGLV 712 (858)
Q Consensus 643 ALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G-~G~vd~~~A~~~~~v 712 (858)
|||++++|+|+++||+++|++||.++.... ..+| +|+||+++|++..+.
T Consensus 568 ALLlS~~P~LT~~qV~~iL~~TA~~l~~~~---------------------n~~~wgG~LDa~kAV~~Ai~ 617 (639)
T PTZ00262 568 SLILSINPSLSYEEVIRILKESIVQLPSLK---------------------NKVKWGGYLDIHHAVNLAIA 617 (639)
T ss_pred HHHHhhCCCCCHHHHHHHHHHhCccCCCCC---------------------CccccCcEEcHHHHHHHHHh
Confidence 999999999999999999999998764321 1233 389999999986543
|
|
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=420.58 Aligned_cols=291 Identities=27% Similarity=0.314 Sum_probs=192.3
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
|+||+|||||||||.+||||.++.. . .|...++ +.+++..+.++..+ ....+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~---~----~~~~~~d---------~~~~~~~g~d~~~~-----------~~~~~~ 53 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN---F----SWKLKFD---------YKAYLLPGMDKWGG-----------FYVIMY 53 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC---C----CcccccC---------cCCCccCCcCCCCC-----------ccCCCC
Confidence 7999999999999999999986532 0 1110000 00112222222211 113457
Q ss_pred CCCCCcccchhhhccCCCCCcccccc-cccceeecCCcceeeeeehhcCCCCCCHHHHHH-------HHHHHH--HCCCC
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGH-HFGNASGMAPRSHIAVYKALYKSFGGFAADVVA-------AIDQAA--QDGVD 335 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~-~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~-------ai~~a~--~~g~~ 335 (858)
|.+||||||||||||+........++ ....+.||||+|+|+.+|++..........+.. +++|++ +++++
T Consensus 54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCce
Confidence 89999999999999975321110000 113568999999999999996522232222222 444443 67999
Q ss_pred EEEEccCCCCCCCC-CCccCCHHHHHHHHH-HhCCCEEEEecCCCCCCC--CCCCCCCCceEEEeecccCceeeeEEEeC
Q 003005 336 IISLSITPNRRPPG-IATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (858)
Q Consensus 336 VIN~S~G~~~~~~~-~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 411 (858)
|||||||....... .....+....+++.+ .++|+++|+||||+|... ...|+.++++|+|||++.....+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---- 209 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---- 209 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----
Confidence 99999997542211 011122333344433 479999999999999854 3467788999999998643110000
Q ss_pred CceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHH
Q 003005 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (858)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 491 (858)
.+. .
T Consensus 210 ------------------~~~-------------------~--------------------------------------- 213 (311)
T cd07497 210 ------------------LFG-------------------Y--------------------------------------- 213 (311)
T ss_pred ------------------hhc-------------------c---------------------------------------
Confidence 000 0
Q ss_pred HhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCC
Q 003005 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (858)
Q Consensus 492 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 571 (858)
.....
T Consensus 214 ---------------------------------------------------------------------------~~~~~ 218 (311)
T cd07497 214 ---------------------------------------------------------------------------LPGGS 218 (311)
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 00112
Q ss_pred CccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC-
Q 003005 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP- 650 (858)
Q Consensus 572 ~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P- 650 (858)
+.++.||||||+.+ |++||||+|||++|+++.+.............|..|+|||||||||||++|||+|++|
T Consensus 219 ~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~ 291 (311)
T cd07497 219 GDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKE 291 (311)
T ss_pred CCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhh
Confidence 45899999999987 8999999999999999876543211111234799999999999999999999999886
Q ss_pred -----CCCHHHHHHHHHccc
Q 003005 651 -----SFSPSAIASALSTSA 665 (858)
Q Consensus 651 -----~lsp~~ik~~L~~TA 665 (858)
.++|++||++|++||
T Consensus 292 ~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 292 KEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hcCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=413.74 Aligned_cols=271 Identities=28% Similarity=0.308 Sum_probs=203.0
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||||||.+||++.+... . ++.+...+.. ...
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~---~-----------------------~l~~~~~~~~------------~~~ 42 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS---G-----------------------DLPGNVNVLG------------DLD 42 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC---C-----------------------CCCcceeecc------------ccC
Confidence 4799999999999999999885432211 0 0101001100 012
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
...|..+|||||||||+ ||||+|+|+.+++.. ..+++++||+|++++|++|||||||
T Consensus 43 ~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 43 GGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 34578899999999995 999999999988643 3788999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhC-CCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeee
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~ 420 (858)
....+. .....+.++++++.++ |++||+||||++... ...|+..|++|+|||++.+.......
T Consensus 100 ~~~~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------ 164 (275)
T cd05562 100 YLNEPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------ 164 (275)
T ss_pred ccCCCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------
Confidence 754321 1234678888888887 999999999999854 34578899999999987542210000
Q ss_pred cCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEE
Q 003005 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (858)
Q Consensus 421 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 500 (858)
|. +
T Consensus 165 --------------------------------~~-------------------------~-------------------- 167 (275)
T cd05562 165 --------------------------------DP-------------------------A-------------------- 167 (275)
T ss_pred --------------------------------cc-------------------------c--------------------
Confidence 00 0
Q ss_pred EEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccccccc
Q 003005 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (858)
Q Consensus 501 ~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~ 580 (858)
........+.|+++
T Consensus 168 ------------------------------------------------------------------~~~~~s~~~~~~~~ 181 (275)
T cd05562 168 ------------------------------------------------------------------PGGTPSSFDPVGIR 181 (275)
T ss_pred ------------------------------------------------------------------cCCCcccccCCccc
Confidence 00000124567889
Q ss_pred CCCCCCCCCCCcCcCCCcccCCCce-EEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 581 GPDPEDSFLDDADIMKPNLVAPGNS-IWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 581 GPt~~~~~~~~~g~~KPDI~APG~~-I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
||+.+ +++||||+|||+. +.++. .++.|..++|||||||||||++|||+|++|+|+++|||+
T Consensus 182 ~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~ 244 (275)
T cd05562 182 LPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRD 244 (275)
T ss_pred CcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99876 6899999999763 44443 456899999999999999999999999999999999999
Q ss_pred HHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 660 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|++||+++...+ .+..||||+||+.+|++
T Consensus 245 ~L~~tA~~~~~~g-------------------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 245 ALRSTALDMGEPG-------------------YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHhCcccCCCC-------------------CCCCcCcCcccHHHHhh
Confidence 9999998875332 35689999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=409.06 Aligned_cols=245 Identities=26% Similarity=0.393 Sum_probs=197.1
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||||||.+||+|.+... . .+|. +..
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~------~-------------------------~~~~-------------~~~ 39 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE------R-------------------------TNWT-------------NEK 39 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc------c-------------------------cccC-------------CCC
Confidence 8999999999999999999999985311 0 0111 012
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
...|..+|||||||||+|+.+ ...||||+|+|+.+|++.+...+..++++++++|+++++++|||||||
T Consensus 40 ~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G 108 (255)
T cd07479 40 TLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG 108 (255)
T ss_pred CCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeecc
Confidence 345778999999999998742 247999999999999998755567788999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC--CCCCCCCceEEEeecccCceeeeEEEeCCceEEEeee
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~ 420 (858)
.... ....+.+++.++.++|++||+||||+|+... ..|+..+++|+|||++.+
T Consensus 109 ~~~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------- 163 (255)
T cd07479 109 GPDF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------- 163 (255)
T ss_pred CCCC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-------------------
Confidence 7432 2356777788889999999999999997533 356778899999985421
Q ss_pred cCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEE
Q 003005 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (858)
Q Consensus 421 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 500 (858)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccccccc
Q 003005 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (858)
Q Consensus 501 ~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~ 580 (858)
+.++.|||+
T Consensus 164 -----------------------------------------------------------------------~~~~~~S~~ 172 (255)
T cd07479 164 -----------------------------------------------------------------------DNIARFSSR 172 (255)
T ss_pred -----------------------------------------------------------------------CccccccCC
Confidence 236789999
Q ss_pred CCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC----CCCHHH
Q 003005 581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----SFSPSA 656 (858)
Q Consensus 581 GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~lsp~~ 656 (858)
|++... -+...|++||||+|||.+|+++. ..+.|..++|||||||||||++|||+|++| .++|.+
T Consensus 173 g~~~~~-~p~~~g~~~~di~apG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~ 241 (255)
T cd07479 173 GMTTWE-LPGGYGRVKPDIVTYGSGVYGSK----------LKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPAS 241 (255)
T ss_pred CCCccc-ccCCCCCcCccEEecCCCeeccc----------cCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHH
Confidence 975311 01123789999999999999876 345789999999999999999999999999 689999
Q ss_pred HHHHHHccccccc
Q 003005 657 IASALSTSATLYD 669 (858)
Q Consensus 657 ik~~L~~TA~~~~ 669 (858)
||++|++||+++.
T Consensus 242 vk~~L~~sA~~~~ 254 (255)
T cd07479 242 MKQALIESATRLP 254 (255)
T ss_pred HHHHHHhhcccCC
Confidence 9999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=434.39 Aligned_cols=409 Identities=23% Similarity=0.278 Sum_probs=235.2
Q ss_pred CCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecch----hhhhcCccCCCC
Q 003005 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA----SAITRGIFNSSQ 259 (858)
Q Consensus 184 ~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~----~~~~~~~~~~~~ 259 (858)
++|+||+|||||||||+.||+|...+. ..++...|++....+.... ...+...+.. ..... ....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg--~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~~---~~p~ 69 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDG--TTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALAS---DNPY 69 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCC--CchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHhc---CCcc
Confidence 489999999999999999999998765 5788999999876543211 1122222221 11111 1112
Q ss_pred CCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC----------CCHHHHHHHHHHH
Q 003005 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG----------GFAADVVAAIDQA 329 (858)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~----------~~~~~i~~ai~~a 329 (858)
+.....|..||||||||||||+..+. ..+.||||+|+|+++|++..... +..++++.||+|+
T Consensus 70 ~~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~ 141 (455)
T cd07478 70 DIVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYL 141 (455)
T ss_pred ccCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHH
Confidence 22345688999999999999986431 35689999999999999987443 5688999999999
Q ss_pred HHC-----CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhC-CCEEEEecCCCCCCCCCCCCC-C----Cc--eEEEe
Q 003005 330 AQD-----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPKSMSSF-S----PW--IFTVG 396 (858)
Q Consensus 330 ~~~-----g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-~----p~--vitVg 396 (858)
++. .+.|||||||.+.+..+ ..+.++++++.+..+ |++||+||||+|....+.... . .. -|.|+
T Consensus 142 ~~~a~~~~~p~VInlSlG~~~g~~~---g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~ 218 (455)
T cd07478 142 YDKALELNKPLVINISLGTNFGSHD---GTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVG 218 (455)
T ss_pred HHHHHHhCCCeEEEEccCcCCCCCC---CccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEEC
Confidence 874 47799999998766532 346788888888776 999999999999854333211 0 00 12222
Q ss_pred ecccCcee----------eeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccc
Q 003005 397 AASHDRIY----------TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQG 466 (858)
Q Consensus 397 A~~~~~~~----------~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~G 466 (858)
.-.....+ .-.+....|+..............+.+.+. ..
T Consensus 219 ~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~------------------------------~t 268 (455)
T cd07478 219 EGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFE------------------------------GT 268 (455)
T ss_pred CCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEEC------------------------------Ce
Confidence 21111000 000000111111000000000001111111 11
Q ss_pred eEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCc---ccCCCCCCCCeEEecChhhHHHHHHHHhccccc
Q 003005 467 NLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF---QLNPTPMKMPGIIIPSPDDSKILLQYYNSSLER 543 (858)
Q Consensus 467 kivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~ 543 (858)
++.+..+......|...+...+.+ ...|-=-+.++......+. .+......-+...+...+.. .....
T Consensus 269 ~i~v~y~~~~~~~g~~~i~i~~~~-~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~~~~--------~tit~ 339 (455)
T cd07478 269 TVYVYYYLPEPYTGDQLIFIRFKN-IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEPDPY--------TTLTI 339 (455)
T ss_pred EEEEEEcCCCCCCCCeEEEEEccC-CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecCCCC--------ceEec
Confidence 111111111111111000000000 0001111111111110000 00000000011111111000 00011
Q ss_pred ccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCc
Q 003005 544 DEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGE 623 (858)
Q Consensus 544 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~ 623 (858)
+.....+|++++.. ...+.++.||||||+.+ +++||||+|||++|+++. +++
T Consensus 340 Pa~~~~vitVga~~-----------~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~----------~~~ 391 (455)
T cd07478 340 PGTARSVITVGAYN-----------QNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTAS----------PGG 391 (455)
T ss_pred CCCCCCcEEEEEEe-----------CCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEee----------cCC
Confidence 11334556666532 22346999999999987 799999999999999998 456
Q ss_pred cceeecccCchhHHHHHHHHHHHHhC------CCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccc
Q 003005 624 SFAMMSGTSMAAPHIAGLAALIKQKF------PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMG 697 (858)
Q Consensus 624 ~y~~~sGTSMAaP~VAG~aALl~q~~------P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G 697 (858)
.|..++|||||||||||++|||+|++ |.|++++||++|++||+++.. ..+++++||
T Consensus 392 ~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~------------------~~~pn~~~G 453 (455)
T cd07478 392 GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPG------------------DEYPNPEWG 453 (455)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCC------------------CCCCCCCCC
Confidence 89999999999999999999999975 557999999999999998742 235678999
Q ss_pred cc
Q 003005 698 SG 699 (858)
Q Consensus 698 ~G 699 (858)
||
T Consensus 454 yG 455 (455)
T cd07478 454 YG 455 (455)
T ss_pred CC
Confidence 98
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=420.39 Aligned_cols=315 Identities=28% Similarity=0.438 Sum_probs=233.6
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCcc----ccccCCCCCCCCCceeeeeeecchhhh
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGI----CEVTRDFPSGSCNRKLIGARHFAASAI 250 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~n~kv~g~~~~~~~~~ 250 (858)
+|++. .++|+||+|||||||||++||+|.+... ....|.+. ..........+++.+++.+++|.+..
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDD-----SKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNN- 72 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCC-----cccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCC-
Confidence 57662 2489999999999999999999998754 11111100 01112233446678899999888651
Q ss_pred hcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcC--CCCCCHHHHHHHHHH
Q 003005 251 TRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK--SFGGFAADVVAAIDQ 328 (858)
Q Consensus 251 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~--~~~~~~~~i~~ai~~ 328 (858)
.+.....+..+|||||||||+|...... ....+.||||+|+|+.+|++.. ........++.++++
T Consensus 73 --------~~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~ 139 (346)
T cd07475 73 --------DDILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIED 139 (346)
T ss_pred --------CccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 1111144788999999999999864311 1135689999999999999973 344777889999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC----------------CCCCCce
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM----------------SSFSPWI 392 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~v 392 (858)
+++.|++|||||||...... .....+..+++.+.++|++||+||||++...... |+..+++
T Consensus 140 a~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 140 AVKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 99999999999999865432 3457888899999999999999999998754221 2233445
Q ss_pred EEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEE
Q 003005 393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472 (858)
Q Consensus 393 itVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~ 472 (858)
|+||+++..
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 555443200
Q ss_pred eccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEe
Q 003005 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK 552 (858)
Q Consensus 473 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 552 (858)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccC
Q 003005 553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632 (858)
Q Consensus 553 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTS 632 (858)
......+.++.||+|||+.+ +++||||+|||.+|+++. .++.|..++|||
T Consensus 226 -------------~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~----------~~~~~~~~~GTS 275 (346)
T cd07475 226 -------------VPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTV----------NDNTYGYMSGTS 275 (346)
T ss_pred -------------cCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEec----------CCCceEeeCcHH
Confidence 01112345889999999987 799999999999999988 456899999999
Q ss_pred chhHHHHHHHHHHHHh----CCCCCHHH----HHHHHHccccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 003005 633 MAAPHIAGLAALIKQK----FPSFSPSA----IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704 (858)
Q Consensus 633 MAaP~VAG~aALl~q~----~P~lsp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~ 704 (858)
||||+|||++|||+|+ +|.|++.+ ||.+|++||.+..... .....+.+.++|+|+||+.
T Consensus 276 ~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~-------------~~~~~~~~~~~G~G~vn~~ 342 (346)
T cd07475 276 MASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE-------------DTKTYYSPRRQGAGLIDVA 342 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC-------------CCCccCCccccCcchhcHH
Confidence 9999999999999997 78899876 7889999998532111 1244567788999999999
Q ss_pred ccCC
Q 003005 705 ASLD 708 (858)
Q Consensus 705 ~A~~ 708 (858)
+|++
T Consensus 343 ~Av~ 346 (346)
T cd07475 343 KAIA 346 (346)
T ss_pred HhhC
Confidence 9985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=408.76 Aligned_cols=297 Identities=29% Similarity=0.424 Sum_probs=227.9
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||+|||++||+|.++.. .. .++.+.++|..+... .
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~-~~-----------------------~~~~~~~d~~~~~~~--~ 54 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFG-PG-----------------------CKVAGGYDFVGDDYD--G 54 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCC-CC-----------------------ceeccccccCCcccc--c
Confidence 5555 8999999999999999999999998644 00 022222333221100 0
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
.+...+...+.|..+|||||||||+|+..+ ..+.||||+|+|+.+|++..........+++++++++++++
T Consensus 55 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 55 TNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 011123345667899999999999998542 24679999999999999986455677889999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEeC
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILG 411 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~ 411 (858)
+|||||||...... ...+..+++.+.++|+++|+||||+|.... ..|+..+++|+||+++
T Consensus 126 ~iIn~S~g~~~~~~-----~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------ 188 (312)
T cd07489 126 DVITASLGGPSGWS-----EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------ 188 (312)
T ss_pred CEEEeCCCcCCCCC-----CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------
Confidence 99999999865432 367778888999999999999999987532 2355667777777531
Q ss_pred CceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHH
Q 003005 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (858)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 491 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCC
Q 003005 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (858)
Q Consensus 492 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 571 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhC-C
Q 003005 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF-P 650 (858)
Q Consensus 572 ~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-P 650 (858)
+.||+|||+.+ .+.||||+|||++++++++.. .+.|..++|||||||+|||++|||+|++ |
T Consensus 189 ---~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 250 (312)
T cd07489 189 ---SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARHG 250 (312)
T ss_pred ---CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcCC
Confidence 44789999987 689999999999999988532 2369999999999999999999999999 9
Q ss_pred CCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeC
Q 003005 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDA 715 (858)
Q Consensus 651 ~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~~v~~~ 715 (858)
.+++.+||++|++||.++...+.. .....+++..++|+|+||+.+|++....+++
T Consensus 251 ~~~~~~v~~~l~~ta~~~~~~~~~----------~~~~~~~~~~~~G~G~vn~~~a~~~~~~~~~ 305 (312)
T cd07489 251 KLSPAELRDLLASTAKPLPWSDGT----------SALPDLAPVAQQGAGLVNAYKALYATTTLSP 305 (312)
T ss_pred CCCHHHHHHHHHHhCccccccCCC----------ccccCCCCHhhcCcceeeHHHHhcCCccccc
Confidence 999999999999999987544320 0011135677899999999999997655543
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=392.14 Aligned_cols=250 Identities=26% Similarity=0.314 Sum_probs=203.2
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
.|.. +++|+||+|||||+|||++||+|++... ......|
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~~---~~~~~~~---------------------------------- 40 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGANL---TPLFTYA---------------------------------- 40 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCcc---ccccCcc----------------------------------
Confidence 4655 7999999999999999999999997533 0000000
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCC-CHHHHHHHHHHHHHCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG-FAADVVAAIDQAAQDG 333 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~-~~~~i~~ai~~a~~~g 333 (858)
.......|..+|||||||||+|+.. ..+.||||+|+|+.++++.....+ ...++++||+||+++|
T Consensus 41 ----~~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g 106 (267)
T cd07476 41 ----AAACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQG 106 (267)
T ss_pred ----ccCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 0112335678999999999998753 235799999999999999764443 4678999999999999
Q ss_pred CCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCc
Q 003005 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (858)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 413 (858)
++|||||||..... ......+.++++.+.++|++||+||||++.....+|+..+++|+|||++.+
T Consensus 107 ~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------ 171 (267)
T cd07476 107 AHIINISGGRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------ 171 (267)
T ss_pred CCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------
Confidence 99999999975422 224567889999999999999999999998877888899999999986421
Q ss_pred eEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHh
Q 003005 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (858)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 493 (858)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCc
Q 003005 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (858)
Q Consensus 494 ~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 573 (858)
+.
T Consensus 172 ------------------------------------------------------------------------------~~ 173 (267)
T cd07476 172 ------------------------------------------------------------------------------GL 173 (267)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred cccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCC--
Q 003005 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS-- 651 (858)
Q Consensus 574 ~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-- 651 (858)
++.||+||+.. .||||+|||.+|+++. +++.|..++|||||||||||++|||+|++|.
T Consensus 174 ~~~~s~~g~~~----------~~~~l~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~ 233 (267)
T cd07476 174 PLKFSNWGADY----------RKKGILAPGENILGAA----------LGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRG 233 (267)
T ss_pred eeeecCCCCCC----------CCceEEecCCCceeec----------CCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhC
Confidence 46689999864 4789999999999988 4568999999999999999999999999887
Q ss_pred --CCHHHHHHHHHccccccccCC
Q 003005 652 --FSPSAIASALSTSATLYDKNG 672 (858)
Q Consensus 652 --lsp~~ik~~L~~TA~~~~~~g 672 (858)
++|++||++|++||+++...+
T Consensus 234 ~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 234 APPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred CCCCHHHHHHHHHHhCccCCCcc
Confidence 899999999999999986543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=394.61 Aligned_cols=289 Identities=37% Similarity=0.533 Sum_probs=216.5
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc---cCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI---FNSSQDYA 262 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~---~~~~~~~~ 262 (858)
|+||+|||||+|||++||+|.+... .++++...++|......... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDA 56 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------------CCCceeeeeECccCCCCcccccccccccccC
Confidence 8999999999999999999996432 12233444444332100000 00000112
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
...|..+|||||||+|+|..++. ..+.||||+|+|+.+|++.....+...+++++|+|+++++++|||||||
T Consensus 57 ~~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g 128 (295)
T cd07474 57 SAGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG 128 (295)
T ss_pred CCCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 24568899999999999885432 3567999999999999998545678889999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCCCCCceEEEeecccCceeeeEEEeCCceEEEeee
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--MSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~ 420 (858)
..... ..+.+..+++.+.++|+++|+||||+|..... .|+..+++|+|||++....
T Consensus 129 ~~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------- 186 (295)
T cd07474 129 SSVNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------- 186 (295)
T ss_pred CCCCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------
Confidence 75432 34678889999999999999999999876544 3677899999998641100
Q ss_pred cCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEE
Q 003005 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (858)
Q Consensus 421 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 500 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccc-
Q 003005 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA- 579 (858)
Q Consensus 501 ~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS- 579 (858)
........|++
T Consensus 187 --------------------------------------------------------------------~~~~~~~~~~s~ 198 (295)
T cd07474 187 --------------------------------------------------------------------AEADTVGPSSSR 198 (295)
T ss_pred --------------------------------------------------------------------CCCCceeccCCC
Confidence 00011233444
Q ss_pred cCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 580 ~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
.|+... .++||||+|||.+|+++.... ++.|..++|||||||+|||++|||+|++|+|++++||+
T Consensus 199 ~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~ 263 (295)
T cd07474 199 GPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKA 263 (295)
T ss_pred CCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 445543 689999999999999998532 35799999999999999999999999999999999999
Q ss_pred HHHccccccccCCCccccccccCCCCCCCCCCCCCcccccccccccc
Q 003005 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATAS 706 (858)
Q Consensus 660 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 706 (858)
+|++||++....+. ..+++..+|+|+||+.+|
T Consensus 264 ~L~~tA~~~~~~~~---------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 264 ALMNTAKPLYDSDG---------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHhhCcccccCCC---------------CcCChhccCcceeccccC
Confidence 99999998765432 112456899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=383.34 Aligned_cols=227 Identities=29% Similarity=0.444 Sum_probs=187.2
Q ss_pred cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 189 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
|+|||||||||.+||+|.++.. ..+++. .....|..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~------------------------------~~~~~~--------------~~~~~~~~ 36 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI------------------------------ARLFFA--------------GPGAPAPS 36 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc------------------------------ccccCC--------------CCCCCCCC
Confidence 7899999999999999987543 000000 01245678
Q ss_pred CCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC---CCCHHHHHHHHHHHHHCCCCEEEEccCCCC
Q 003005 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF---GGFAADVVAAIDQAAQDGVDIISLSITPNR 345 (858)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~---~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~ 345 (858)
+|||||||||+|+... ..||||+|+|+.+|++.... .+...++++||+||++.|++|||||||+..
T Consensus 37 ~HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~ 105 (239)
T cd05561 37 AHGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP 105 (239)
T ss_pred CCHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 9999999999987531 15999999999999998632 266788999999999999999999999632
Q ss_pred CCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCC
Q 003005 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPG 424 (858)
Q Consensus 346 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (858)
...++++++.+.++|++||+||||+|... ..+|+..+++|+||+++.+
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~----------------------- 154 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR----------------------- 154 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-----------------------
Confidence 25788899999999999999999999753 4577888999999986421
Q ss_pred CCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEEC
Q 003005 425 TDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMD 504 (858)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 504 (858)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCC
Q 003005 505 PFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDP 584 (858)
Q Consensus 505 ~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~ 584 (858)
+.++.||++|+..
T Consensus 155 -------------------------------------------------------------------~~~~~~s~~g~~~ 167 (239)
T cd05561 155 -------------------------------------------------------------------GRLYREANRGAHV 167 (239)
T ss_pred -------------------------------------------------------------------CCccccCCCCCcc
Confidence 2356789999876
Q ss_pred CCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 003005 585 EDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (858)
Q Consensus 585 ~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 664 (858)
||+|||.+|+++. .++.|..++|||||||||||++|||+|++| ++++|||++|++|
T Consensus 168 -------------di~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~t 223 (239)
T cd05561 168 -------------DFAAPGVDVWVAA----------PGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAAT 223 (239)
T ss_pred -------------eEEccccceeccc----------CCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 8999999999976 456899999999999999999999999999 9999999999999
Q ss_pred ccccccCC
Q 003005 665 ATLYDKNG 672 (858)
Q Consensus 665 A~~~~~~g 672 (858)
|+++...+
T Consensus 224 a~~~g~~~ 231 (239)
T cd05561 224 AKDLGPPG 231 (239)
T ss_pred hhccCCCC
Confidence 99875443
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=393.97 Aligned_cols=269 Identities=23% Similarity=0.367 Sum_probs=194.5
Q ss_pred CCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhh-----cCccC-----
Q 003005 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT-----RGIFN----- 256 (858)
Q Consensus 187 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~-----~~~~~----- 256 (858)
|+|+|||||||||++||||+++.+.+..+++. ++....+.++.. -+++++|...... ....+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~--~~~d~d~ng~~d------d~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPG--NGIDDDNNGYID------DVNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCC--CCccCCCCCccc------cccCeeccCCcccccccccCcccccccc
Confidence 68999999999999999999987744444332 222222222111 1344555431100 00000
Q ss_pred -CCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCC
Q 003005 257 -SSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335 (858)
Q Consensus 257 -~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ 335 (858)
...+...+.+..+|||||||||+|...++ .++.||||+|+|+.+|++.. ......++++||+||+++|++
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCc
Confidence 01122345578999999999999975432 23679999999999999864 446778899999999999999
Q ss_pred EEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC---CCC--------CCCceEEEeecccCcee
Q 003005 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS---MSS--------FSPWIFTVGAASHDRIY 404 (858)
Q Consensus 336 VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~--------~~p~vitVgA~~~~~~~ 404 (858)
|||||||..... ....+..+++.+.++|+++|+||||+|.+... +|+ ..+++|+|||++..
T Consensus 144 IiN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--- 215 (291)
T cd07483 144 VINMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--- 215 (291)
T ss_pred EEEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---
Confidence 999999964322 22467889999999999999999999875321 111 12455555553211
Q ss_pred eeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchH
Q 003005 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (858)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~ 484 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccc
Q 003005 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (858)
Q Consensus 485 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 564 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHH
Q 003005 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (858)
Q Consensus 565 ~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 644 (858)
.....++.||++|+. +|||.|||.+|+++. +++.|..++|||||||||||++||
T Consensus 216 ----~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAl 269 (291)
T cd07483 216 ----YENNLVANFSNYGKK------------NVDVFAPGERIYSTT----------PDNEYETDSGTSMAAPVVSGVAAL 269 (291)
T ss_pred ----CCcccccccCCCCCC------------ceEEEeCCCCeEecc----------CcCCeEeeccHHHHHHHHHHHHHH
Confidence 000136789999974 349999999999987 456899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHcccc
Q 003005 645 IKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 645 l~q~~P~lsp~~ik~~L~~TA~ 666 (858)
|+|++|+|++.|||++|++||.
T Consensus 270 ~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 270 IWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=385.19 Aligned_cols=247 Identities=28% Similarity=0.360 Sum_probs=198.4
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC-CCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS-PFD 266 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~-~~d 266 (858)
||+|||||||||++||+|..... ..+.++.+.++|.+. ... ..|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------------~~~~~i~~~~~~~~~------------~~~~~~~ 45 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------------FKNLRILGEYDFVDN------------SNNTNYT 45 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------------ccCCceeeeecCccC------------CCCCCCC
Confidence 79999999999999999963221 112356666776653 112 257
Q ss_pred CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC--CCHHHHHHHHHHHHHCCCCEEEEccCCC
Q 003005 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (858)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~VIN~S~G~~ 344 (858)
..+|||||||||+|+.. +.+.||||+|+|+.+|+...... ....+++.+++|+.+.+++|||||||..
T Consensus 46 ~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~ 115 (261)
T cd07493 46 DDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYT 115 (261)
T ss_pred CCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 88999999999999753 24679999999999998754222 3456789999999999999999999976
Q ss_pred CCCCC--------CCccCCHHHHHHHHHHhCCCEEEEecCCCCCC---CCCCCCCCCceEEEeecccCceeeeEEEeCCc
Q 003005 345 RRPPG--------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (858)
Q Consensus 345 ~~~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 413 (858)
..... .......+.++++.+.++|++||+||||++.. ...+|+..+++|+|||++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------ 183 (261)
T cd07493 116 TFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------ 183 (261)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------
Confidence 43221 11123467888999999999999999999987 35567888999999985421
Q ss_pred eEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHh
Q 003005 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (858)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 493 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCc
Q 003005 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (858)
Q Consensus 494 ~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 573 (858)
+.
T Consensus 184 ------------------------------------------------------------------------------~~ 185 (261)
T cd07493 184 ------------------------------------------------------------------------------GN 185 (261)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred cccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCC
Q 003005 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653 (858)
Q Consensus 574 ~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ls 653 (858)
++.||++||+.+ +++||||+|||.+|++.. ..+.|..++|||||||+|||++|||+|++|+|+
T Consensus 186 ~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt 248 (261)
T cd07493 186 KASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNWT 248 (261)
T ss_pred CCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCC
Confidence 677999999986 799999999999999854 455899999999999999999999999999999
Q ss_pred HHHHHHHHHcccc
Q 003005 654 PSAIASALSTSAT 666 (858)
Q Consensus 654 p~~ik~~L~~TA~ 666 (858)
+.|||++|++||+
T Consensus 249 ~~~i~~~l~~tA~ 261 (261)
T cd07493 249 NLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=382.55 Aligned_cols=247 Identities=34% Similarity=0.478 Sum_probs=196.5
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
|+||+|||||+|||++||+|.+... .|... .+...+.+ ++.......|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~--------~~~~~--------------~~~~~~~~---------~d~~~~~~~~~ 49 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYR--------GWGGG--------------SADHDYNW---------FDPVGNTPLPY 49 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccc--------ccCCC--------------Cccccccc---------ccCCCCCCCCC
Confidence 8999999999999999999998622 00000 00000000 11111234566
Q ss_pred CCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH------------CC
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ------------DG 333 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~------------~g 333 (858)
|..+|||||||||+|..... ...||||+|+|+.+|++... .+...+++++++|+++ .+
T Consensus 50 d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 50 DDNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRN-GGNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCC-CCcHHHHHHHHHHHHhcccccccccccccC
Confidence 88899999999999875321 23799999999999999873 4778899999999975 68
Q ss_pred CCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEe
Q 003005 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIIL 410 (858)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~ 410 (858)
++|||||||.... ....+..+++.+.++|++||+||||++.... .+|+.++++|+|||++.+
T Consensus 120 ~~Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 120 PDVINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred CeEEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 9999999997542 2356778888999999999999999987543 256778899999985421
Q ss_pred CCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHH
Q 003005 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (858)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~ 490 (858)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCC
Q 003005 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (858)
Q Consensus 491 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 570 (858)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC
Q 003005 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (858)
Q Consensus 571 ~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 650 (858)
+.++.||++||... ++.||||+|||.+|+++. .++.|..++|||||||+|||++|||+|++|
T Consensus 185 -~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~----------~~~~~~~~~GTS~AaP~vaG~aAll~~~~p 246 (264)
T cd07481 185 -DVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAV----------PGGGYGSSSGTSMAAPHVAGVAALLWSANP 246 (264)
T ss_pred -CCCccccCCCCCCC-------CCcCceEEECCCCeEEec----------CCCceEeeCcHHHHHHHHHHHHHHHHHhCC
Confidence 23678999999986 799999999999999998 456899999999999999999999999999
Q ss_pred C--CCHHHHHHHHHcccc
Q 003005 651 S--FSPSAIASALSTSAT 666 (858)
Q Consensus 651 ~--lsp~~ik~~L~~TA~ 666 (858)
+ ++++|||.+|++||+
T Consensus 247 ~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 247 SLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 9 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=386.18 Aligned_cols=221 Identities=25% Similarity=0.362 Sum_probs=166.7
Q ss_pred CCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCC--CHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~--~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
.|+.+|||||||||||+..+. ..+.||||+|+|+++|+++...+. ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 377899999999999985321 346799999999999998753332 2356999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHH-HHhCCCEEEEecCCCCCCCCCC--CC-CCCceEEEeecccCceeeeEEEeCCceEEEe
Q 003005 343 PNRRPPGIATFFNPIDMALLS-AAKAGIFVVQAAGNTGPSPKSM--SS-FSPWIFTVGAASHDRIYTNSIILGNSLTISG 418 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~ 418 (858)
.....+.. ..+.+++.+ +.++|++||+||||+|+...+. |+ ..++||+|||+........
T Consensus 254 ~~~~~~~~----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~------------ 317 (412)
T cd04857 254 EATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAA------------ 317 (412)
T ss_pred cCCCCccc----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccc------------
Confidence 86543221 223444443 4568999999999999876553 43 4789999999643211000
Q ss_pred eecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeE
Q 003005 419 VGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAG 498 (858)
Q Consensus 419 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g 498 (858)
.|.+
T Consensus 318 ---------~y~~------------------------------------------------------------------- 321 (412)
T cd04857 318 ---------EYSL------------------------------------------------------------------- 321 (412)
T ss_pred ---------cccc-------------------------------------------------------------------
Confidence 0000
Q ss_pred EEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccccc
Q 003005 499 IVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYS 578 (858)
Q Consensus 499 ~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 578 (858)
.....+.++.||
T Consensus 322 --------------------------------------------------------------------~~~~~~~~~~fS 333 (412)
T cd04857 322 --------------------------------------------------------------------REKLPGNQYTWS 333 (412)
T ss_pred --------------------------------------------------------------------ccccCCcccccc
Confidence 000124588999
Q ss_pred ccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH----hCCCCCH
Q 003005 579 ARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSP 654 (858)
Q Consensus 579 S~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~lsp 654 (858)
||||+.+ |++||||+|||..|.|.- .+ ....|..|+|||||||||||++|||++ .+|+|+|
T Consensus 334 SrGP~~d-------G~~~pdI~APG~~I~s~p-~~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp 398 (412)
T cd04857 334 SRGPTAD-------GALGVSISAPGGAIASVP-NW-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTP 398 (412)
T ss_pred ccCCccc-------CCcCceEEeCCCcEEEcc-cC-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCH
Confidence 9999998 899999999999998752 21 234789999999999999999999985 5789999
Q ss_pred HHHHHHHHcccccc
Q 003005 655 SAIASALSTSATLY 668 (858)
Q Consensus 655 ~~ik~~L~~TA~~~ 668 (858)
.+||++|++||+++
T Consensus 399 ~~Vk~aL~~TA~~~ 412 (412)
T cd04857 399 YSVRRALENTAKKL 412 (412)
T ss_pred HHHHHHHHHhCccC
Confidence 99999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=374.71 Aligned_cols=258 Identities=34% Similarity=0.567 Sum_probs=206.4
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
|+||+|+|||+|||++||+|.+... ..+. +.. .........
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~-------~~~~-----------------------~~~---------~~~~~~~~~ 41 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII-------RFAD-----------------------FVN---------TVNGRTTPY 41 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc-------cccc-----------------------ccc---------cccCCCCCC
Confidence 8999999999999999999998644 0000 000 001123455
Q ss_pred CCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC----CCCEEEEcc
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSI 341 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~VIN~S~ 341 (858)
|..+|||||||||+|+.... ...+.||||+|+|+.+|+++....+...+++++++|+++. +++||||||
T Consensus 42 d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 42 DDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 77899999999999985421 1346899999999999999875557888999999999998 999999999
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC--CCCCCCCceEEEeecccCceeeeEEEeCCceEEEee
Q 003005 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419 (858)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~ 419 (858)
|..... ....+.+.++++.+.++|++||+||||++.... ..|+..+++|+|||++.+...
T Consensus 115 g~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~--------------- 176 (264)
T cd07487 115 GAPPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH--------------- 176 (264)
T ss_pred CCCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC---------------
Confidence 986543 335678899999999999999999999998765 567788999999997533110
Q ss_pred ecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEE
Q 003005 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499 (858)
Q Consensus 420 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~ 499 (858)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccc
Q 003005 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579 (858)
Q Consensus 500 i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 579 (858)
...++.||+
T Consensus 177 -----------------------------------------------------------------------~~~~~~~s~ 185 (264)
T cd07487 177 -----------------------------------------------------------------------DDGISYFSS 185 (264)
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 013678999
Q ss_pred cCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 580 ~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
+||+.+ ++.||||+|||++|++..+..... ....++.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 186 ~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~ 257 (264)
T cd07487 186 RGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKC 257 (264)
T ss_pred CCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHH
Confidence 999987 799999999999999986533111 112456899999999999999999999999999999999999
Q ss_pred HHHcccc
Q 003005 660 ALSTSAT 666 (858)
Q Consensus 660 ~L~~TA~ 666 (858)
+|++||+
T Consensus 258 ~L~~tA~ 264 (264)
T cd07487 258 ILRDTAT 264 (264)
T ss_pred HHHhhcC
Confidence 9999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=369.96 Aligned_cols=263 Identities=29% Similarity=0.403 Sum_probs=200.0
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.+......+.. ....+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~----------------------~~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDP----------------------AVNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCccc----------------------ccCCccccc-------
Confidence 5666 7899999999999999999999998722011100 000000000
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
+.........|..+|||||||||+|+.+......|.. .+.|+||+|+|+.+|++.........+++++|+|+++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 0001123345678999999999999764332222221 3457999999999999987555778889999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhC-------CCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeE
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKA-------GIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~ 407 (858)
+|||||||.... ..+...+.++++.+.++ |++||+||||++......|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGG----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCc----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 999999997542 12345677888888888 9999999999998877778889999999986421
Q ss_pred EEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHH
Q 003005 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (858)
Q Consensus 408 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~ 487 (858)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccccccc
Q 003005 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (858)
Q Consensus 488 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 567 (858)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCc-eEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHH
Q 003005 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGN-SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646 (858)
Q Consensus 568 ~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 646 (858)
+.++.||++|+.. ||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+
T Consensus 196 ----~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 196 ----DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred ----CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 2356799999876 8999999 89888754321 124579999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHHcc
Q 003005 647 QKFPS-FSPSAIASALSTS 664 (858)
Q Consensus 647 q~~P~-lsp~~ik~~L~~T 664 (858)
|++|+ ++|+|||++|++|
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=370.19 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=122.3
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecch
Q 003005 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247 (858)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~ 247 (858)
.+++.. +|.. +++|+||+||||||||+..|| |..... .. ++. +..
T Consensus 7 ~l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~~----------~~---------------~~~----~~~ 51 (298)
T cd07494 7 LLNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESRGY----------QV---------------RVV----LAP 51 (298)
T ss_pred hcChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcCCc----------cc---------------eee----cCC
Confidence 345544 6765 899999999999999999898 665322 00 000 000
Q ss_pred hhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHH
Q 003005 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327 (858)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~ 327 (858)
.......|+.||||||||++. ||||+|+|+.+|+++. ..++++++|+
T Consensus 52 -----------~~~~~~~D~~gHGT~vag~i~------------------GvAP~a~i~~vkv~~~----~~~~~~~ai~ 98 (298)
T cd07494 52 -----------GATDPACDENGHGTGESANLF------------------AIAPGAQFIGVKLGGP----DLVNSVGAFK 98 (298)
T ss_pred -----------CCCCCCCCCCCcchheeecee------------------EeCCCCeEEEEEccCC----CcHHHHHHHH
Confidence 011234578899999998753 9999999999999875 3467899999
Q ss_pred HHHHCCCCEEEEccCCCCCCCCC------CccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeeccc
Q 003005 328 QAAQDGVDIISLSITPNRRPPGI------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400 (858)
Q Consensus 328 ~a~~~g~~VIN~S~G~~~~~~~~------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~ 400 (858)
||++++++|||||||........ ......+++++++|.++|++||+||||++. .+|+..|+||+|||++.
T Consensus 99 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 99 KAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred HHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 99999999999999975432210 112346888999999999999999999975 57999999999999753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=376.18 Aligned_cols=263 Identities=24% Similarity=0.237 Sum_probs=189.8
Q ss_pred cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 189 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
.+|||||||||.+||+|.+... .+ ..+. . ....+.|..
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~--------~~----------------------~~~~----------~--~~~~~~d~~ 38 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALA--------ED----------------------DLDS----------D--EPGWTADDL 38 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhc--------cc----------------------cccc----------c--CCCCcCCCC
Confidence 3799999999999999998643 00 0000 0 001156889
Q ss_pred CCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC----CCCHHHHHHHHHHHHHCC---CCEEEEcc
Q 003005 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF----GGFAADVVAAIDQAAQDG---VDIISLSI 341 (858)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~----~~~~~~i~~ai~~a~~~g---~~VIN~S~ 341 (858)
||||||||||++.... .....|+||+|+|+.+|++...+ .....+++++|+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999975432 12346999999999999998743 256678999999999853 48999999
Q ss_pred CCCCCCCCCCccCCHHHHHHH-HHHhCCCEEEEecCCCCCCCCC------------CCCCCCceEEEeecccCceeeeEE
Q 003005 342 TPNRRPPGIATFFNPIDMALL-SAAKAGIFVVQAAGNTGPSPKS------------MSSFSPWIFTVGAASHDRIYTNSI 408 (858)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~ 408 (858)
|....... .....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.......
T Consensus 111 G~~~~~~~--~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 111 GSPLPIDD--GRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred CCCCCccC--CCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 98654321 11234555554 3568999999999999987543 356678999999987543210000
Q ss_pred EeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHH
Q 003005 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (858)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 488 (858)
.+ +
T Consensus 189 ~~---------------------------------------------------------------------~-------- 191 (291)
T cd04847 189 RY---------------------------------------------------------------------S-------- 191 (291)
T ss_pred cc---------------------------------------------------------------------c--------
Confidence 00 0
Q ss_pred HHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccC
Q 003005 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (858)
Q Consensus 489 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 568 (858)
.
T Consensus 192 -------------------------------------------------------------------------------~ 192 (291)
T cd04847 192 -------------------------------------------------------------------------------A 192 (291)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCC--------CccccCccceeecccCchhHHHHH
Q 003005 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD--------SVEFQGESFAMMSGTSMAAPHIAG 640 (858)
Q Consensus 569 ~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSMAaP~VAG 640 (858)
......+.|||+||..+ +++||||+|||++|.+..+..... .....++.|..++|||||||||||
T Consensus 193 ~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag 265 (291)
T cd04847 193 VGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAAR 265 (291)
T ss_pred cccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHH
Confidence 00011334999999987 799999999999998865422110 011145689999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 641 LAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 641 ~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
++|||+|++|+++|++||++|++||+
T Consensus 266 ~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 266 LAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=363.11 Aligned_cols=229 Identities=32% Similarity=0.476 Sum_probs=192.5
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||+||+++||+|.++.. ..+++... .
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~~~------------------------------~~~~~~~~-------------~ 57 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGRAI------------------------------WGADFVGG-------------D 57 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCCee------------------------------eeeecCCC-------------C
Confidence 6999999999999999999999987532 11122111 1
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC-----CCCEE
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-----GVDII 337 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~~VI 337 (858)
...|..+|||||||||+|+. .||||+|+|+.+|+++....+..++++.+++|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 14578899999999999863 499999999999999875567888999999999987 48999
Q ss_pred EEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEE
Q 003005 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (858)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 416 (858)
|||||... ...+..+++.+.++|++||+||||+|... ...|+..+++|+|||++.+
T Consensus 124 n~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 124 NMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred EeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 99999753 35788889999999999999999999865 4567888999999986422
Q ss_pred EeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCC
Q 003005 417 SGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSA 496 (858)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga 496 (858)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccc
Q 003005 497 AGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576 (858)
Q Consensus 497 ~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 576 (858)
+.++.
T Consensus 181 ---------------------------------------------------------------------------~~~~~ 185 (255)
T cd04077 181 ---------------------------------------------------------------------------DARAS 185 (255)
T ss_pred ---------------------------------------------------------------------------CCccC
Confidence 12577
Q ss_pred ccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHH
Q 003005 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSA 656 (858)
Q Consensus 577 fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ 656 (858)
||++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++++|
T Consensus 186 ~S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ 244 (255)
T cd04077 186 FSNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAE 244 (255)
T ss_pred cccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 89999876 899999999998743 245889999999999999999999999999999999
Q ss_pred HHHHHHccccc
Q 003005 657 IASALSTSATL 667 (858)
Q Consensus 657 ik~~L~~TA~~ 667 (858)
||++|++||++
T Consensus 245 v~~~L~~tA~~ 255 (255)
T cd04077 245 VKARLLNLATK 255 (255)
T ss_pred HHHHHHhhccC
Confidence 99999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=361.18 Aligned_cols=253 Identities=28% Similarity=0.471 Sum_probs=190.5
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||+|||++||+|.+... .| .+|... .........|.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~--------~~----------------------~~~~~~--------~~~~~~~~~d~ 42 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA--------QW----------------------ADFDEN--------RRISATEVFDA 42 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC--------Cc----------------------eeccCC--------CCCCCCCCCCC
Confidence 79999999999999999987543 11 011100 00112344577
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||||+|+..+ +...||||+|+|+.+|++... ++..++++++|+|+++.+++|||||||.....
T Consensus 43 ~~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 43 GGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred CCcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCC-CCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 89999999999998542 235799999999999999873 37788999999999999999999999975432
Q ss_pred CCCCccCCHHHHHHHHHHh-CCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCCCC
Q 003005 348 PGIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426 (858)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (858)
.+.+..+++.+.+ +|++||+||||++......|+..+++|+|||++.+.....+..
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~----------------- 169 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS----------------- 169 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-----------------
Confidence 3566777766665 6999999999999887788899999999999864421000000
Q ss_pred ceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 427 KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 427 ~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
+
T Consensus 170 --------------------------~----------------------------------------------------- 170 (254)
T cd07490 170 --------------------------F----------------------------------------------------- 170 (254)
T ss_pred --------------------------C-----------------------------------------------------
Confidence 0
Q ss_pred CcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCC
Q 003005 507 VIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPED 586 (858)
Q Consensus 507 ~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~ 586 (858)
........+.+|....
T Consensus 171 ----------------------------------------------------------------g~~~~~~~~~~~~~~~ 186 (254)
T cd07490 171 ----------------------------------------------------------------GSSGASLVSAPDSPPD 186 (254)
T ss_pred ----------------------------------------------------------------cccccccccCCCCCcc
Confidence 0001222333444332
Q ss_pred CCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 587 SFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 587 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
...||||+|||.+|+++..... ..+.|..++|||||||+|||++|||+|++|+|+++|||.+|++||+
T Consensus 187 ------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 ------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999652211 4568999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=366.30 Aligned_cols=269 Identities=27% Similarity=0.349 Sum_probs=192.5
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||||||++||+|.++.. ..+. +-.......+.. ....+.....+|..+... .+.........+.
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~-~g~d----~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~ 70 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL-PGYD----FISDPAIANDGD--GRDSDPTDPGDWVTGDDV---PPGGFCGSGVSPS 70 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc-cCcc----cccCcccccCCC--CCCCCCCCcccccccccc---cccccccCCCCCC
Confidence 79999999999999999998753 0111 100000000000 000000000000000000 0011112334567
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH----------HCCCCEE
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA----------QDGVDII 337 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~----------~~g~~VI 337 (858)
.+|||||||||+|...++ ..+.||||+|+|+.+|++.. .++..+++++|++|++ .++++||
T Consensus 71 ~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~-~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Ii 141 (285)
T cd07496 71 SWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGK-CGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVI 141 (285)
T ss_pred CCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecC-CCCcHHHHHHHHHHHhccCcCCCcccCCCCeEE
Confidence 899999999999985422 24579999999999999987 4458889999999998 4578999
Q ss_pred EEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEE
Q 003005 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (858)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 416 (858)
|||||..... ...+.++++.+.++|++||+||||++... ..+|+..+++|+|||++.+
T Consensus 142 n~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 142 NLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred EeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 9999975421 35788899999999999999999999876 6678888999999986422
Q ss_pred EeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCC
Q 003005 417 SGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSA 496 (858)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga 496 (858)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccc
Q 003005 497 AGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576 (858)
Q Consensus 497 ~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 576 (858)
+.++.
T Consensus 201 ---------------------------------------------------------------------------~~~~~ 205 (285)
T cd07496 201 ---------------------------------------------------------------------------GQRAS 205 (285)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 23678
Q ss_pred ccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCC-----CccccCccceeecccCchhHHHHHHHHHHHHhCCC
Q 003005 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD-----SVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (858)
Q Consensus 577 fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 651 (858)
||++||.. ||+|||.+|.++....... ........|..++|||||||+|||++|||+|++|+
T Consensus 206 ~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~ 272 (285)
T cd07496 206 YSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPS 272 (285)
T ss_pred ccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 99999976 8999999999887543210 11223457899999999999999999999999999
Q ss_pred CCHHHHHHHHHcc
Q 003005 652 FSPSAIASALSTS 664 (858)
Q Consensus 652 lsp~~ik~~L~~T 664 (858)
|++++||++|++|
T Consensus 273 lt~~~v~~~L~~t 285 (285)
T cd07496 273 LTPAQIESLLQST 285 (285)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=361.95 Aligned_cols=244 Identities=34% Similarity=0.495 Sum_probs=201.6
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++.+. +|.. + +|+||+|||||+|||++||+|..... ...+++...
T Consensus 16 ~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~~~-----------------------------~~~~~~~~~ 60 (260)
T cd07484 16 IGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKVKF-----------------------------VLGYDFVDN 60 (260)
T ss_pred cChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccCCc-----------------------------ccceeccCC
Confidence 44444 7776 3 99999999999999999999854322 112222211
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
...+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++....+...+++++|++
T Consensus 61 ------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~ 120 (260)
T cd07484 61 ------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRY 120 (260)
T ss_pred ------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHH
Confidence 1235578899999999999874322 24679999999999999987556788899999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEE
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI 408 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~ 408 (858)
+++.+++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 121 a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------- 186 (260)
T cd07484 121 AADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------- 186 (260)
T ss_pred HHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-------
Confidence 99999999999999753 3467888999999999999999999999888889999999999986422
Q ss_pred EeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHH
Q 003005 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (858)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 488 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccC
Q 003005 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (858)
Q Consensus 489 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 568 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHh
Q 003005 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648 (858)
Q Consensus 569 ~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 648 (858)
+.++.||++|+.. |++|||.+|+++. ..+.|..++|||||||+|||++|||+|+
T Consensus 187 ---~~~~~~s~~g~~~-------------~~~apG~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~Al~~~~ 240 (260)
T cd07484 187 ---DKRASFSNYGKWV-------------DVSAPGGGILSTT----------PDGDYAYMSGTSMATPHVAGVAALLYSQ 240 (260)
T ss_pred ---CCcCCcCCCCCCc-------------eEEeCCCCcEeec----------CCCCEEEeeeHHHHHHHHHHHHHHHHhc
Confidence 1356789999765 8999999999987 3458999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcccccc
Q 003005 649 FPSFSPSAIASALSTSATLY 668 (858)
Q Consensus 649 ~P~lsp~~ik~~L~~TA~~~ 668 (858)
+| +++++||++|++||+++
T Consensus 241 ~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 241 GP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-CCHHHHHHHHHHhCccC
Confidence 99 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=365.67 Aligned_cols=278 Identities=27% Similarity=0.355 Sum_probs=201.2
Q ss_pred CCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCC
Q 003005 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261 (858)
Q Consensus 182 ~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~ 261 (858)
.+++|+||+|||||+|||++||+|.+... . ...+.++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~-~------------------~~~~~~~~~~~~~~~~~-------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF-N------------------KTNLFHRKIVRYDSLSD-------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc-C------------------cCccCcccEEEeeccCC--------------
Confidence 47999999999999999999999987532 0 00012223333222221
Q ss_pred CCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC-CCHHHHHHHHHHHHHCCCCEEEEc
Q 003005 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDGVDIISLS 340 (858)
Q Consensus 262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~-~~~~~i~~ai~~a~~~g~~VIN~S 340 (858)
...|..+|||||||||+|+.+.... ...+.||||+|+|+.+|++..... ....++..+++++.+.+++|||||
T Consensus 49 -~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 49 -TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred -CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEecc
Confidence 1227899999999999998643210 114679999999999999886332 455678899999999999999999
Q ss_pred cCCCCCCCCCCccCCHHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEeCCceE
Q 003005 341 ITPNRRPPGIATFFNPIDMALLSAA-K-AGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (858)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 415 (858)
||..... .......++..+. + +|++||+||||++.... ..|+..+++|+|||++......
T Consensus 123 ~G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~---------- 187 (293)
T cd04842 123 WGSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN---------- 187 (293)
T ss_pred CCCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc----------
Confidence 9986432 1234445554443 3 79999999999998765 6778899999999986542200
Q ss_pred EEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCC
Q 003005 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (858)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 495 (858)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred CeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccc
Q 003005 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (858)
Q Consensus 496 a~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 575 (858)
.....+.++
T Consensus 194 -----------------------------------------------------------------------~~~~~~~~~ 202 (293)
T cd04842 194 -----------------------------------------------------------------------QSDNSDTVA 202 (293)
T ss_pred -----------------------------------------------------------------------ccCCCCccc
Confidence 001124589
Q ss_pred cccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC-----
Q 003005 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----- 650 (858)
Q Consensus 576 ~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----- 650 (858)
.||++||+.+ +++||||+|||.+|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 203 ~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~ 274 (293)
T cd04842 203 SFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYP 274 (293)
T ss_pred cccCcCCCCC-------CCcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 9999999986 7999999999999999975421 01111345889999999999999999999999854
Q ss_pred ---CCCHHHHHHHHHcccc
Q 003005 651 ---SFSPSAIASALSTSAT 666 (858)
Q Consensus 651 ---~lsp~~ik~~L~~TA~ 666 (858)
.+++.++|++|++||+
T Consensus 275 ~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 275 TKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCcCcCHHHHHHHHHhcCC
Confidence 5667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=359.37 Aligned_cols=293 Identities=27% Similarity=0.393 Sum_probs=232.2
Q ss_pred eEEEEEcc-eeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccccCC-----CCCcccCCCc---------ccccccCCCC
Q 003005 119 LKLYSYHY-LINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATT-----HTPQFLGLPQ---------GAWIQEGGYE 183 (858)
Q Consensus 119 ~~~~~~~~-~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~~~~-----~~~~~~~~~~---------~~w~~~~~~~ 183 (858)
+..+.... +++++.-..+.+.+..++..|-++.++++..++.... +....|++.. ..|...-...
T Consensus 136 ~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~ 215 (501)
T KOG1153|consen 136 KNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEI 215 (501)
T ss_pred ccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeec
Confidence 33444444 7888888999999999999999999998877655431 2222234321 1233222223
Q ss_pred CCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 003005 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (858)
Q Consensus 184 ~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~ 263 (858)
..|+||...|+||||+..||||.++.. |.- | ++ ....
T Consensus 216 ~aG~gvtaYv~DTGVni~H~dFegRa~---------wGa-~-----i~----------------------------~~~~ 252 (501)
T KOG1153|consen 216 DAGKGVTAYVLDTGVNIEHPDFEGRAI---------WGA-T-----IP----------------------------PKDG 252 (501)
T ss_pred ccCCCeEEEEeccccccccccccccee---------ccc-c-----cC----------------------------CCCc
Confidence 489999999999999999999998754 311 1 00 0123
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC---------CC
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---------GV 334 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---------g~ 334 (858)
..|++||||||||+|++.. .|||.+++|+++||+.+++.+..++++.++|++++. +.
T Consensus 253 ~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~ 318 (501)
T KOG1153|consen 253 DEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKK 318 (501)
T ss_pred ccccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCC
Confidence 4589999999999999874 599999999999999998889999999999999986 47
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCCCCceEEEeecccCceeeeEEEeCCc
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 413 (858)
.|.|||+|+.. +-.++.|++.|.+.|+.+++||||+..+.+ +.|+.+.++|||||++..
T Consensus 319 sv~NlSlGg~~--------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------ 378 (501)
T KOG1153|consen 319 SVANLSLGGFR--------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------ 378 (501)
T ss_pred eEEEEecCCcc--------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------
Confidence 89999999864 358999999999999999999999998765 557889999999997522
Q ss_pred eEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHh
Q 003005 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (858)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 493 (858)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCc
Q 003005 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (858)
Q Consensus 494 ~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 573 (858)
+.
T Consensus 379 ------------------------------------------------------------------------------D~ 380 (501)
T KOG1153|consen 379 ------------------------------------------------------------------------------DT 380 (501)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 35
Q ss_pred cccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCC--
Q 003005 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS-- 651 (858)
Q Consensus 574 ~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-- 651 (858)
++.||+||++. ||.|||.+|+|++-+. .+.-.+.||||||+|||||++|.+++.+|.
T Consensus 381 iA~FSN~G~CV-------------diFAPGv~IlSs~iGs--------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~ 439 (501)
T KOG1153|consen 381 IAFFSNWGKCV-------------DIFAPGVNILSSWIGS--------NNATAILSGTSMASPHVAGLAAYFLSLGPLPD 439 (501)
T ss_pred hhhhcCcccee-------------eeecCchhhhhhhhcC--------ccchheeecccccCcchhhhHHHhhhcCCCCh
Confidence 89999999998 8999999999999653 225578999999999999999999998883
Q ss_pred -------CCHHHHHHHHHccccc
Q 003005 652 -------FSPSAIASALSTSATL 667 (858)
Q Consensus 652 -------lsp~~ik~~L~~TA~~ 667 (858)
.+|.++|..+..-..+
T Consensus 440 ~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 440 SSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred HHhhhccCChHHhhhhhhccccc
Confidence 3788888888776653
|
|
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=367.00 Aligned_cols=148 Identities=32% Similarity=0.470 Sum_probs=110.9
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||+|||.+||+|.+... ...+|.. ..
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------------------------~~~~~~~-------------~~ 40 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDI------------------------------TTKSFVG-------------GE 40 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcc------------------------------cCcccCC-------------CC
Confidence 6999999999999999999999997543 0011111 12
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
.+.|..+|||||||||+|+... +...||||+|+|+.+|++.....+...+++++++|+++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2457889999999999987542 2346999999999999998756677888999999999999999999999
Q ss_pred CCCCC------CCCCccCCHHHHHHHHH---------------HhCCCEEEEecCCCCCCC
Q 003005 343 PNRRP------PGIATFFNPIDMALLSA---------------AKAGIFVVQAAGNTGPSP 382 (858)
Q Consensus 343 ~~~~~------~~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~ 382 (858)
..... .........++...+.+ .++|++||+||||++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 75411 11111223344444444 679999999999998653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=360.61 Aligned_cols=251 Identities=21% Similarity=0.227 Sum_probs=179.6
Q ss_pred CCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhh
Q 003005 170 GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA 249 (858)
Q Consensus 170 ~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~ 249 (858)
+++. +|+.. +.+|+||+|+|||+|||.+||||.++... . +
T Consensus 3 ~~~~-aw~~~---~g~G~gV~VaviDtGid~~Hpdl~~~~~~-----~--~----------------------------- 42 (277)
T cd04843 3 NARY-AWTKP---GGSGQGVTFVDIEQGWNLNHEDLVGNGIT-----L--I----------------------------- 42 (277)
T ss_pred ChHH-HHHhc---CCCCCcEEEEEecCCCCCCChhhcccccc-----c--c-----------------------------
Confidence 3344 78764 24589999999999999999999986430 0 0
Q ss_pred hhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHH
Q 003005 250 ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA 329 (858)
Q Consensus 250 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a 329 (858)
....+.|+++|||||||||+|..+. .++.||||+|+|+.+|++. .++++++|.||
T Consensus 43 ----------~~~~~~d~~gHGT~VAGiIaa~~n~---------~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A 97 (277)
T cd04843 43 ----------SGLTDQADSDHGTAVLGIIVAKDNG---------IGVTGIAHGAQAAVVSSTR------VSNTADAILDA 97 (277)
T ss_pred ----------CCCCCCCCCCCcchhheeeeeecCC---------CceeeeccCCEEEEEEecC------CCCHHHHHHHH
Confidence 0011457789999999999986421 2357999999999999985 23566777777
Q ss_pred HH----CCCCEEEEccCCCCCCCCC--CccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC------------CC-CCC
Q 003005 330 AQ----DGVDIISLSITPNRRPPGI--ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM------------SS-FSP 390 (858)
Q Consensus 330 ~~----~g~~VIN~S~G~~~~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~~-~~p 390 (858)
++ .++.+||||||........ ..+...+.++++++.++|+++|+||||++...... +. ..+
T Consensus 98 ~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (277)
T cd04843 98 ADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDS 177 (277)
T ss_pred HhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCC
Confidence 76 3466799999985422110 12344567789999999999999999998753211 11 124
Q ss_pred ceEEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEE
Q 003005 391 WIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLI 470 (858)
Q Consensus 391 ~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl 470 (858)
++|+|||++.+
T Consensus 178 ~vI~VgA~~~~--------------------------------------------------------------------- 188 (277)
T cd04843 178 GAIMVGAGSST--------------------------------------------------------------------- 188 (277)
T ss_pred CeEEEEeccCC---------------------------------------------------------------------
Confidence 56666654311
Q ss_pred EEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceE
Q 003005 471 CSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKI 550 (858)
Q Consensus 471 ~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 550 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecc
Q 003005 551 IKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSG 630 (858)
Q Consensus 551 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sG 630 (858)
....++.||++||.. ||.|||++|+++.............+.|..++|
T Consensus 189 -------------------~~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sG 236 (277)
T cd04843 189 -------------------TGHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSG 236 (277)
T ss_pred -------------------CCCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecc
Confidence 001268899999976 899999999999865432111223334578999
Q ss_pred cCchhHHHHHHHHHHHH----h-CCCCCHHHHHHHHHcccc
Q 003005 631 TSMAAPHIAGLAALIKQ----K-FPSFSPSAIASALSTSAT 666 (858)
Q Consensus 631 TSMAaP~VAG~aALl~q----~-~P~lsp~~ik~~L~~TA~ 666 (858)
||||||||||++|||++ + +|+|+|+|||++|++|+.
T Consensus 237 TS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 237 TSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred cchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 99999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=353.80 Aligned_cols=241 Identities=31% Similarity=0.446 Sum_probs=191.9
Q ss_pred cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 189 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
|+|||||+|||++||+|.+... ....| ++.. +...+.|..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~-----~~~~~-----------------------~~~~------------~~~~~~~~~ 40 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK-----LVPGW-----------------------NFVS------------NNDPTSDID 40 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC-----ccCCc-----------------------cccC------------CCCCCCCCC
Confidence 6899999999999999998421 11111 1110 112345788
Q ss_pred CCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCCC
Q 003005 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPP 348 (858)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 348 (858)
+|||||||||+|+..+. ..+.||||+|+|+.+|++.....+...++.++++|+++.+++|||||||.....
T Consensus 41 ~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 111 (242)
T cd07498 41 GHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST- 111 (242)
T ss_pred CCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC-
Confidence 99999999999975322 346799999999999999875556788999999999999999999999975432
Q ss_pred CCCccCCHHHHHHHHHHh-CCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCCCCc
Q 003005 349 GIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK 427 (858)
Q Consensus 349 ~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (858)
..+...++.+++.+.. +|++||+||||+|......|+..+++|+|||++..
T Consensus 112 --~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 163 (242)
T cd07498 112 --ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------- 163 (242)
T ss_pred --chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------
Confidence 2345678888888888 99999999999998877778889999999986422
Q ss_pred eeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC
Q 003005 428 MYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (858)
Q Consensus 428 ~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 507 (858)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCC
Q 003005 508 IGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDS 587 (858)
Q Consensus 508 ~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~ 587 (858)
+.++.||++||..
T Consensus 164 ----------------------------------------------------------------~~~~~~s~~g~~~--- 176 (242)
T cd07498 164 ----------------------------------------------------------------DARASYSNYGNYV--- 176 (242)
T ss_pred ----------------------------------------------------------------CCccCcCCCCCCe---
Confidence 2357789999976
Q ss_pred CCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 003005 588 FLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (858)
Q Consensus 588 ~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 664 (858)
|++|||.++++....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 177 ----------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 ----------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999888543211 111245688999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=350.65 Aligned_cols=253 Identities=30% Similarity=0.403 Sum_probs=191.9
Q ss_pred CCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCC
Q 003005 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFD 266 (858)
Q Consensus 187 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d 266 (858)
+||+|||||||||++||+|.++.+.... ...+.+....+..+.. . ...++| ......+.|
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~--~~~~~~~~~~~~~~~~-----~-~~~~~~------------~~~~~~~~d 61 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPG--EIPGNGIDDDGNGYVD-----D-IYGWNF------------VNNDNDPMD 61 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcc--cccccCcccCCCCccc-----C-CCcccc------------cCCCCCCCC
Confidence 6899999999999999999987541100 0011111111111100 0 011111 112345678
Q ss_pred CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCC
Q 003005 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRR 346 (858)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 346 (858)
..+|||||||||+|..... ..+.||||+|+|+.+|++.....+...+++++++++++.+++|||+|||....
T Consensus 62 ~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~ 133 (259)
T cd07473 62 DNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP 133 (259)
T ss_pred CCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 8999999999999975432 23579999999999999987555888899999999999999999999997532
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC---CCCCC--CCCceEEEeecccCceeeeEEEeCCceEEEeeec
Q 003005 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP---KSMSS--FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (858)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~ 421 (858)
...+.++++.+.++|++||+||||++... ..+|+ ..+++|+||+++..
T Consensus 134 -------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------- 186 (259)
T cd07473 134 -------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------- 186 (259)
T ss_pred -------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------
Confidence 46788889999999999999999998762 23443 24678888875321
Q ss_pred CCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEE
Q 003005 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (858)
Q Consensus 422 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 501 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccC
Q 003005 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (858)
Q Consensus 502 ~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 581 (858)
+.++.||++|
T Consensus 187 ----------------------------------------------------------------------~~~~~~s~~g 196 (259)
T cd07473 187 ----------------------------------------------------------------------DALASFSNYG 196 (259)
T ss_pred ----------------------------------------------------------------------CCcCcccCCC
Confidence 2356689998
Q ss_pred CCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003005 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661 (858)
Q Consensus 582 Pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L 661 (858)
|.. ||+.|||.++++.. ..+.|..++|||||||+|||++|||+|++|.+++++||++|
T Consensus 197 ~~~------------~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L 254 (259)
T cd07473 197 KKT------------VDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAI 254 (259)
T ss_pred CCC------------cEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 754 49999999999966 45689999999999999999999999999999999999999
Q ss_pred Hcccc
Q 003005 662 STSAT 666 (858)
Q Consensus 662 ~~TA~ 666 (858)
++||+
T Consensus 255 ~~tA~ 259 (259)
T cd07473 255 LSSAD 259 (259)
T ss_pred HHhCC
Confidence 99985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=347.74 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=120.6
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
+++|+|||||||||++||+|+++.. ..++|.... .+.....+...
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~------------------------------~~~~~~~~~-----~~~~~~~~~~~ 46 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII------------------------------GGKSFSPYE-----GDGNKVSPYYV 46 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc------------------------------cCCCCCCCC-----CCcccCCCCCC
Confidence 6899999999999999999998633 011111100 00000112224
Q ss_pred CCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC------CCCHHHHHHHHHHHHHCCCCEEEE
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF------GGFAADVVAAIDQAAQDGVDIISL 339 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~------~~~~~~i~~ai~~a~~~g~~VIN~ 339 (858)
|..||||||||||+ |+||+|+|+.+|+++... .+....+++||+||+++|+|||||
T Consensus 47 d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~ 108 (247)
T cd07491 47 SADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISM 108 (247)
T ss_pred CCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEe
Confidence 68899999999996 899999999999998643 245678999999999999999999
Q ss_pred ccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-C--CCCCCCceEEEeecc
Q 003005 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-S--MSSFSPWIFTVGAAS 399 (858)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVgA~~ 399 (858)
|||....... ......+.+++++|.++|++||+||||++.... . .|+..++||+|||++
T Consensus 109 S~g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 109 SWTIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 9997543110 123578899999999999999999999998754 3 356688999999865
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=342.06 Aligned_cols=227 Identities=35% Similarity=0.557 Sum_probs=187.7
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||+||+.+||+|.+... ..++|... ......|.
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~------------------------------~~~~~~~~-----------~~~~~~~~ 39 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV------------------------------GGANFTGD-----------DNNDYQDG 39 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc------------------------------CcccccCC-----------CCCCCCCC
Confidence 79999999999999999997533 11111111 00234577
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||||++.... ..+.|+||+|+|+.+|+++....+...+++++++|+++.|++|||||||...
T Consensus 40 ~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-- 108 (229)
T cd07477 40 NGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS-- 108 (229)
T ss_pred CCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC--
Confidence 89999999999987532 1457999999999999998755577789999999999999999999999743
Q ss_pred CCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC--CCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCCC
Q 003005 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGT 425 (858)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (858)
....+..+++.+.++|++||+||||++...... |+..+++|+||+++.+
T Consensus 109 -----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 109 -----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 235678888899999999999999999876654 8889999999986422
Q ss_pred CceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECC
Q 003005 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505 (858)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 505 (858)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCC
Q 003005 506 FVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPE 585 (858)
Q Consensus 506 ~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~ 585 (858)
+.++.||++|+..
T Consensus 160 ------------------------------------------------------------------~~~~~~s~~g~~~- 172 (229)
T cd07477 160 ------------------------------------------------------------------NNRASFSSTGPEV- 172 (229)
T ss_pred ------------------------------------------------------------------CCcCCccCCCCCc-
Confidence 1256689999865
Q ss_pred CCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 003005 586 DSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (858)
Q Consensus 586 ~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 664 (858)
|+.|||.+|+++. ..+.|..++|||||||+|||++|||+|++|+++|++||++|++|
T Consensus 173 ------------~~~apg~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 ------------ELAAPGVDILSTY----------PNNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------------eEEeCCCCeEEec----------CCCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8999999999988 45689999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=356.30 Aligned_cols=155 Identities=30% Similarity=0.378 Sum_probs=110.3
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
.|+|||||||||++||+|.+....... .+. .. ..+.. .......+.....|.
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~----~~~----~~---------------~~~~~-----~~~~~~~~~~~~~d~ 52 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSK----NLV----PK---------------GGYDG-----KEAGETGDINDIVDK 52 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccc----ccc----cC---------------CCcCC-----ccccccCCCCcCCCC
Confidence 389999999999999999975430000 000 00 00000 000111122345678
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||+|+|+.+ ..||||+|+|+.+|+++........+++++|+||++++++|||||||.....
T Consensus 53 ~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 53 LGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred CCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 9999999999998742 2499999999999999874445788999999999999999999999975433
Q ss_pred CCC----CccCCHHHHHHHHHHhCCCEEEEecCCCCCCC
Q 003005 348 PGI----ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP 382 (858)
Q Consensus 348 ~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 382 (858)
... ....+.+.++++.+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 211 22335677888889999999999999999753
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=356.34 Aligned_cols=276 Identities=36% Similarity=0.578 Sum_probs=208.8
Q ss_pred EEEEeccCcCCCCCCCC-CCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 190 VIGFIDTGIDPTHPSFA-DDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 190 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
+|||||||||++||+|. ++.. ..++.+.+.|.++. .......|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~-------------------------~~~~~~~~~~~~~~---------~~~~~~~~~~ 46 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFI-------------------------WSKVPGGYNFVDGN---------PNPSPSDDDN 46 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEE-------------------------EEEEEEEEETTTTB---------STTTSSSTSS
T ss_pred CEEEEcCCcCCCChhHccCCcc-------------------------cccccceeeccCCC---------CCcCccccCC
Confidence 69999999999999999 4322 12344455555431 1123446788
Q ss_pred CCcccchhhhccCC-CCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH-HCCCCEEEEccCCCCC
Q 003005 269 GHGSHTASVAAGNH-GIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRR 346 (858)
Q Consensus 269 gHGThVAGiiag~~-~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~VIN~S~G~~~~ 346 (858)
+|||||||||+|.. .+. ....|+||+|+|+.+|++... +....+++.++++++ +.+++|||||||....
T Consensus 47 ~HGT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~-~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~ 117 (282)
T PF00082_consen 47 GHGTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNS-GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSG 117 (282)
T ss_dssp SHHHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTT-SEEHHHHHHHHHHHHHHTTSSEEEECEEBEES
T ss_pred Cccchhhhhccccccccc--------ccccccccccccccccccccc-ccccccccchhhhhhhccCCcccccccccccc
Confidence 99999999999985 211 245799999999999998763 377888999999999 8999999999987321
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCC
Q 003005 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAP 423 (858)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (858)
.. .....+.+..+++.+.++|+++|+||||++.... ..|+..+++|+||+++..
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------- 174 (282)
T PF00082_consen 118 PP-DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------- 174 (282)
T ss_dssp SS-HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------
T ss_pred cc-ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc----------------------
Confidence 11 0123345667788899999999999999987654 356667888999875421
Q ss_pred CCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEE
Q 003005 424 GTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYM 503 (858)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 503 (858)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCC
Q 003005 504 DPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583 (858)
Q Consensus 504 ~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt 583 (858)
+.++.||++|+.
T Consensus 175 --------------------------------------------------------------------~~~~~~s~~g~~ 186 (282)
T PF00082_consen 175 --------------------------------------------------------------------GQPASYSNYGGP 186 (282)
T ss_dssp --------------------------------------------------------------------SSBSTTSSBSTT
T ss_pred --------------------------------------------------------------------cccccccccccc
Confidence 135778999766
Q ss_pred CCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 003005 584 PEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALST 663 (858)
Q Consensus 584 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~ 663 (858)
... +++||||+|||.+|.++++... ...|..++|||||||+|||++|||+|++|+|++++||.+|++
T Consensus 187 ~~~------~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ 253 (282)
T PF00082_consen 187 SDD------GRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLIN 253 (282)
T ss_dssp ETT------CTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ccc------cccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 532 7999999999999998884321 135888999999999999999999999999999999999999
Q ss_pred cccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 664 SATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 664 TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
||.++...+ ....+..||||+||+.+|++
T Consensus 254 ta~~~~~~~----------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 254 TADDLGSTN----------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HSBESSETT----------------SSSSHHHHTTSBE-HHHHHH
T ss_pred hCcccCcCC----------------CCCCCCCccCChhCHHHHhC
Confidence 999886221 12335578999999999873
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=333.84 Aligned_cols=151 Identities=25% Similarity=0.237 Sum_probs=117.5
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||||||++||+|.+... .+. .+..+ +...+.....|.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------~~~----------------------~~~~~-------~~~~~~~~~~d~ 43 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------DGE----------------------VTIDL-------EIIVVSAEGGDK 43 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------ccc----------------------ccccc-------ccccCCCCCCCC
Confidence 79999999999999999998644 000 00000 000112344578
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||||+ +.+|+++|+.+|+++....+..+++++|++|+++++++|||||||.....
T Consensus 44 ~gHGT~vAgiia------------------~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 44 DGHGTACAGIIK------------------KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred CCcHHHHHHHHH------------------ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 899999999998 44699999999999875557888999999999999999999999975421
Q ss_pred CCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecc
Q 003005 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399 (858)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~ 399 (858)
....+..+++++.++|+++|+||||++.... .|+..++||+||+.+
T Consensus 106 -----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~ 151 (222)
T cd07492 106 -----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDT 151 (222)
T ss_pred -----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecC
Confidence 2356788889999999999999999987543 378889999999753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=349.92 Aligned_cols=249 Identities=24% Similarity=0.263 Sum_probs=177.5
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.+... .. ..++|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~-----~~-----------------------~~~~~~~~------ 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYD-----PE-----------------------ASYDFNDN------ 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhccc-----cc-----------------------ccccccCC------
Confidence 6665 7999999999999999999999997643 00 11111111
Q ss_pred cCCCCCCCCC--CCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC
Q 003005 255 FNSSQDYASP--FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD 332 (858)
Q Consensus 255 ~~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~ 332 (858)
.....+ .|..+|||||||||+|+.... ....||||+|+|+.+|++... ........++.++.+
T Consensus 73 ----~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~- 137 (297)
T cd04059 73 ----DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD- 137 (297)
T ss_pred ----CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-
Confidence 001122 277899999999999985321 134799999999999998763 233344555555544
Q ss_pred CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHh-----CCCEEEEecCCCCCCCC----CCCCCCCceEEEeecccCce
Q 003005 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSPK----SMSSFSPWIFTVGAASHDRI 403 (858)
Q Consensus 333 g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgA~~~~~~ 403 (858)
.++|||||||..............+..+++.+.. +|++||+||||+|.... ..++..+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 4699999999764332111223345555555554 69999999999998322 122456788888886422
Q ss_pred eeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcch
Q 003005 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST 483 (858)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 483 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccc
Q 003005 484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL 563 (858)
Q Consensus 484 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 563 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCce-------EEeeccCCCCCCccccCccceeecccCchhH
Q 003005 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS-------IWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (858)
Q Consensus 564 ~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 636 (858)
+.++.||++|+.. +++|||.. |+++.... ..+.|..++|||||||
T Consensus 216 --------g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 216 --------GVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred --------CCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 2356788888876 68888877 76665321 1246789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 637 ~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
+|||++|||+|++|+|++.|||.+|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=335.97 Aligned_cols=247 Identities=38% Similarity=0.455 Sum_probs=188.6
Q ss_pred CCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 003005 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (858)
Q Consensus 185 ~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~ 264 (858)
+|+||+|||||+||+.+||+|.+...... ...+ .........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---~~~~-----------------------------------~~~~~~~~~ 42 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---YYVA-----------------------------------VNDAGYASN 42 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---cccc-----------------------------------cccccCCCC
Confidence 69999999999999999999998654000 0000 000001234
Q ss_pred CCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC-CCCHHHHHHHHHHHHHCCCCEEEEccCC
Q 003005 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAIDQAAQDGVDIISLSITP 343 (858)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~~VIN~S~G~ 343 (858)
.|..+|||||||||+|+... ....|+||+|+|+.+|+++... ......+.++++++++.+++|||||||.
T Consensus 43 ~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 43 GDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 56789999999999998542 3457999999999999998744 4566778999999999999999999998
Q ss_pred CCCCCCC--------CccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC---------CCCCCceEEEeecccCceeee
Q 003005 344 NRRPPGI--------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM---------SSFSPWIFTVGAASHDRIYTN 406 (858)
Q Consensus 344 ~~~~~~~--------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgA~~~~~~~~~ 406 (858)
....... ......+..+++.+.++|++||+||||++...... ++..+++|+||+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---- 189 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---- 189 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC----
Confidence 6533210 12456778888899999999999999998754332 23456788888765321
Q ss_pred EEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHH
Q 003005 407 SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQ 486 (858)
Q Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 486 (858)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccc
Q 003005 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKAN 566 (858)
Q Consensus 487 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 566 (858)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccc--ccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHH
Q 003005 567 FSNSAPKIMY--YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (858)
Q Consensus 567 ~~~~~~~~a~--fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 644 (858)
.... ||++|+... .++++|||.+|+++.+. ....|..++|||||||+|||++||
T Consensus 190 ------~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~Al 245 (267)
T cd04848 190 ------TIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAAL 245 (267)
T ss_pred ------Ccccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHHH
Confidence 1222 477776543 33799999999998742 144788999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHcccc
Q 003005 645 IKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 645 l~q~~P~lsp~~ik~~L~~TA~ 666 (858)
|+|++|+++++|||++|++||+
T Consensus 246 ~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 246 LAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=326.99 Aligned_cols=287 Identities=23% Similarity=0.328 Sum_probs=220.2
Q ss_pred CCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCC
Q 003005 180 GGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQ 259 (858)
Q Consensus 180 ~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~ 259 (858)
|.+|++|++|+|||.|||+.-+||.|+.--- ...| .+
T Consensus 194 Wk~GyTGa~VkvAiFDTGl~~~HPHFrnvKE------RTNW-------------------------TN------------ 230 (1033)
T KOG4266|consen 194 WKKGYTGAKVKVAIFDTGLRADHPHFRNVKE------RTNW-------------------------TN------------ 230 (1033)
T ss_pred HhccccCCceEEEEeecccccCCccccchhh------hcCC-------------------------cC------------
Confidence 4459999999999999999999999995211 1122 11
Q ss_pred CCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q 003005 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISL 339 (858)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 339 (858)
...-.|.-||||.|||+|||.. ...|.||+++|+++|||.+..-.+.+++++|+.||+...+||+|+
T Consensus 231 -E~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNL 297 (1033)
T KOG4266|consen 231 -EDTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNL 297 (1033)
T ss_pred -ccccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEee
Confidence 1334578899999999999874 346999999999999998855588999999999999999999999
Q ss_pred ccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCC--CCceEEEeecccCceeeeEEEeCCceEEE
Q 003005 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF--SPWIFTVGAASHDRIYTNSIILGNSLTIS 417 (858)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~--~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 417 (858)
|+|++ ++...++-+-+-.+...++++|.|+||+|+-..+..++ -..||.||..
T Consensus 298 SIGGP------DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------- 352 (1033)
T KOG4266|consen 298 SIGGP------DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------- 352 (1033)
T ss_pred ccCCc------ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-------------------
Confidence 99986 34556777777788899999999999999965544322 2244444432
Q ss_pred eeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCe
Q 003005 418 GVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAA 497 (858)
Q Consensus 418 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 497 (858)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccc
Q 003005 498 GIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYY 577 (858)
Q Consensus 498 g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 577 (858)
+-.+.++.|
T Consensus 353 -----------------------------------------------------------------------dfdD~IA~F 361 (1033)
T KOG4266|consen 353 -----------------------------------------------------------------------DFDDHIASF 361 (1033)
T ss_pred -----------------------------------------------------------------------cccchhhhh
Confidence 112569999
Q ss_pred cccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH----hCCCCC
Q 003005 578 SARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFS 653 (858)
Q Consensus 578 SS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~ls 653 (858)
||||-+... -+..-||+||||++.|.+|..+.. .++...+||||.|+|.|||+++||.+ +.--++
T Consensus 362 SSRGMtTWE-LP~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~N 430 (1033)
T KOG4266|consen 362 SSRGMTTWE-LPHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLN 430 (1033)
T ss_pred ccCCcceee-cCCcccccCCceEeeccccccCcc----------cccchhccCCcccchhhhceeeeEeeeheehhhccC
Confidence 999975431 233448999999999999987653 34678899999999999999999976 333469
Q ss_pred HHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC------CCeeeeCCcchhhhhcccc
Q 003005 654 PSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD------PGLVFDASYNDYMSFLCGI 727 (858)
Q Consensus 654 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~------~~~v~~~~~~~~~~~~~~~ 727 (858)
|+.+|.+|+..|.+++..+- +.||+|++|+.++++ |...+-+++.||....-.+
T Consensus 431 PASmKQaLiegA~kLpg~NM--------------------fEQGaGkldLL~syqiL~SYkP~asl~PsylD~t~cpYmW 490 (1033)
T KOG4266|consen 431 PASMKQALIEGAAKLPGPNM--------------------FEQGAGKLDLLESYQILKSYKPRASLFPSYLDYTDCPYMW 490 (1033)
T ss_pred HHHHHHHHHhHHhhCCCCch--------------------hhccCcchhHHHHHHHHHhcCCCceecchhcccccCcccC
Confidence 99999999999999875432 589999999998874 5555555555555433344
Q ss_pred CC
Q 003005 728 NG 729 (858)
Q Consensus 728 ~~ 729 (858)
++
T Consensus 491 Py 492 (1033)
T KOG4266|consen 491 PY 492 (1033)
T ss_pred cc
Confidence 44
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=330.89 Aligned_cols=368 Identities=22% Similarity=0.307 Sum_probs=232.3
Q ss_pred CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC--CCHHHHHHHHHHHHHCCCCEEEEccCCC
Q 003005 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (858)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~VIN~S~G~~ 344 (858)
..-||||||||++|+.... ....||||+|+|+++++.+...+ -+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3569999999999997533 23569999999999999876444 2334689999999999999999999988
Q ss_pred CCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC---CCCceEEEeecccCceeeeEEEeCCceEEEeeec
Q 003005 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS---FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (858)
Q Consensus 345 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~ 421 (858)
..+++.. +.++.+-+.+.+.|+++|.||||.|+.-.++++ ....+|.|||........
T Consensus 381 a~~pn~G---RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~---------------- 441 (1304)
T KOG1114|consen 381 AHLPNSG---RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ---------------- 441 (1304)
T ss_pred CCCCCcc---hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH----------------
Confidence 7776543 333333344557899999999999998776653 355899999853221100
Q ss_pred CCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEE
Q 003005 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (858)
Q Consensus 422 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 501 (858)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccC
Q 003005 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (858)
Q Consensus 502 ~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 581 (858)
+.... ...-.+.+..+||||
T Consensus 442 ------------------------------a~y~~------------------------------~e~vp~~~YtWsSRg 461 (1304)
T KOG1114|consen 442 ------------------------------AEYSV------------------------------REPVPSNPYTWSSRG 461 (1304)
T ss_pred ------------------------------hhhhh------------------------------hccCCCCccccccCC
Confidence 00000 001113477899999
Q ss_pred CCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH----hCCCCCHHHH
Q 003005 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPSAI 657 (858)
Q Consensus 582 Pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~lsp~~i 657 (858)
|+.| |-+--.|+|||+.|.|- |.+ .-..-..|+|||||+|+++|++|||++ .+-.|||.-|
T Consensus 462 P~~D-------G~lGVsi~APggAiAsV-P~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysV 526 (1304)
T KOG1114|consen 462 PCLD-------GDLGVSISAPGGAIASV-PQY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSV 526 (1304)
T ss_pred CCcC-------CCcceEEecCCccccCC-chh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHH
Confidence 9998 78888999999999664 222 112446799999999999999999976 5668999999
Q ss_pred HHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeCCcchhhhhccccCCCcceeeec
Q 003005 658 ASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNY 737 (858)
Q Consensus 658 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~ 737 (858)
|.+|++||.+++.. .++.||.|++++.+|.+-=.-.+-.+..-+.| |.-.
T Consensus 527 rrAlenTa~~l~~i--------------------d~faqG~GmlqVdkAyEyL~q~~~~f~~~l~f----------~~v~ 576 (1304)
T KOG1114|consen 527 RRALENTATKLGDI--------------------DSFAQGQGMLQVDKAYEYLAQSDFSFPNALGF----------INVN 576 (1304)
T ss_pred HHHHHhcccccCcc--------------------chhccCcceeehhHHHHHHHHhhhcCCcccee----------EEEe
Confidence 99999999988643 25789999999999985200000000011111 1111
Q ss_pred cCcccccCCCCCCCCCCCCCe-EEEeecCcceEEEEEEEE-cCC---CceEEEEeecCCcc-eEEEeecEEEEeCCCEEE
Q 003005 738 TGQNCWAYNSTISGADLNLPS-ITIARLNQSRTVQRTLTN-IAG---NETYSVGWSAPYGV-SMKVSPTHFSIASGEKQV 811 (858)
Q Consensus 738 ~~~~~~~~~~~~~~~~~n~~s-i~~~~~~~~~~~~~tv~n-~~~---~~ty~~~~~~~~~~-~v~~~p~~~tl~~g~s~~ 811 (858)
.|.+|.-+--...+-..+.|+ .++. +.-.+.| .++ ...|.+...-.... .|+ .|+.+-| .++.|.
T Consensus 577 VgN~~srGIyLRep~~~~~p~e~~i~-------VePiF~~~~e~~keki~Fe~~L~L~st~pwVq-~p~~l~l-~~~~R~ 647 (1304)
T KOG1114|consen 577 VGNSCSRGIYLREPTQVCSPSEHTIG-------VEPIFENGEENEKEKISFEVQLSLASTQPWVQ-CPEYLML-ANQGRG 647 (1304)
T ss_pred eccccccceEecCCcccCCcccccee-------ccccccCccccccccccceeeEeeecCCccee-Cchhhee-ccCCce
Confidence 122221100001111111110 0110 0001111 010 12222222111111 333 3766666 788999
Q ss_pred EEEEEEEecCCCCeEE----EEEEEEeCCccEEEEeEEEEEEeecccc
Q 003005 812 LNVFFNATTSGTAASF----GRIGLFGNQGHIVNIPLSVVARLSYNAT 855 (858)
Q Consensus 812 ~~v~~~~~~~~~~~~~----G~i~~~~~~~~~l~iP~~~~~~~~~~~~ 855 (858)
|.|.+++.......++ ||-.-..+.++..+||+.+....+-.++
T Consensus 648 i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P~~v~~~ 695 (1304)
T KOG1114|consen 648 INVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKPKVVAND 695 (1304)
T ss_pred eEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEEccccccCC
Confidence 9999998877655444 4444445678999999998777655544
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=288.26 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHH--HHCCCCEEEEcc
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA--AQDGVDIISLSI 341 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a--~~~g~~VIN~S~ 341 (858)
..|.++|||||||||||.. |++|+|+|+..++... ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3478999999999999873 6779999987554322 223456677777 567999999999
Q ss_pred CCCCCCCCC--CccCCHHHHHHHHHHhC-CCEEEEecCCCCCCC-----CCCCCCCCceEEEeecccC
Q 003005 342 TPNRRPPGI--ATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-----KSMSSFSPWIFTVGAASHD 401 (858)
Q Consensus 342 G~~~~~~~~--~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~ 401 (858)
|........ ......+..+++.+.++ |+++|+||||+|... ...|+..+++|+|||++..
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~ 161 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRN 161 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCC
Confidence 976433210 01234577778777766 999999999999853 2345677899999997643
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=272.86 Aligned_cols=123 Identities=36% Similarity=0.524 Sum_probs=101.7
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH-HCCCCEEEEccC
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSIT 342 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~VIN~S~G 342 (858)
..+..+||||||++|++..... ...|+||+++|+.+|+...........+++++++++ +.+++|||||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g 110 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG 110 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCC
Confidence 4467899999999999885432 126999999999999988744467888999999999 899999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhC-CCEEEEecCCCCCCCC---CCCCCCCceEEEeeccc
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASH 400 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~ 400 (858)
..... ....+..++..+.++ |+++|+||||.+.... ..++..+++|+||+++.
T Consensus 111 ~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~ 167 (241)
T cd00306 111 GPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDR 167 (241)
T ss_pred CCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCc
Confidence 86432 235677788888888 9999999999998776 47788999999998653
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=239.36 Aligned_cols=248 Identities=31% Similarity=0.486 Sum_probs=183.6
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+|++|+|||+||+..||+|.+..... ++|... ....
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~~------------------------------~~~~~~----------~~~~ 177 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVAG------------------------------GDFVDG----------DPEP 177 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhcccccc------------------------------cccccC----------CCCC
Confidence 689999999999999999999999864400 111111 0001
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCC-CCCCHHHHHHHHHHHHHCC--CCEEEE
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS-FGGFAADVVAAIDQAAQDG--VDIISL 339 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~-~~~~~~~i~~ai~~a~~~g--~~VIN~ 339 (858)
...|..+|||||+|++++.... +.....|++|+++++.++++... ..+...+++.+++++++.+ +++|||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 2468899999999999984200 01235799999999999999875 4477788899999999999 999999
Q ss_pred ccCCCCCCCCCCccCCHHHHHHHHHHhCC-CEEEEecCCCCCCCC----CCCCCCC--ceEEEeecccCceeeeEEEeCC
Q 003005 340 SITPNRRPPGIATFFNPIDMALLSAAKAG-IFVVQAAGNTGPSPK----SMSSFSP--WIFTVGAASHDRIYTNSIILGN 412 (858)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~p--~vitVgA~~~~~~~~~~~~~~~ 412 (858)
|+|.. .. ......+..++..+...| +++|+|+||.+.... .+|...+ .+++||+.+.
T Consensus 251 s~g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------ 314 (508)
T COG1404 251 SLGGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------ 314 (508)
T ss_pred cCCCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------------
Confidence 99985 11 223467788888888887 999999999997652 2222222 5555554321
Q ss_pred ceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHH
Q 003005 413 SLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAK 492 (858)
Q Consensus 413 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~ 492 (858)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCC
Q 003005 493 NLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAP 572 (858)
Q Consensus 493 ~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 572 (858)
.+
T Consensus 315 ------------------------------------------------------------------------------~~ 316 (508)
T COG1404 315 ------------------------------------------------------------------------------SD 316 (508)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred ccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCcc--ceeecccCchhHHHHHHHHHHHHhCC
Q 003005 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES--FAMMSGTSMAAPHIAGLAALIKQKFP 650 (858)
Q Consensus 573 ~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~--y~~~sGTSMAaP~VAG~aALl~q~~P 650 (858)
.++.||++|+.. ..+++|||.+|.+.. .. ....+.. |..++||||++|||+|++||+++.+|
T Consensus 317 ~~~~~s~~g~~~-----------~~~~~apg~~i~~~~-~~----~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~~ 380 (508)
T COG1404 317 TVASFSNDGSPT-----------GVDIAAPGVNILSLS-AV----NTLPGDGADYVTLSGTSMAAPHVSGVAALVLSANP 380 (508)
T ss_pred ccccccccCCCC-----------CcceeCCCccccccc-cc----eeeeCCccceEeeccccccccHHHHHHHHHHccCc
Confidence 467889999752 128999999998822 00 0003334 99999999999999999999999999
Q ss_pred -CCCHHHHHHHHHccccc
Q 003005 651 -SFSPSAIASALSTSATL 667 (858)
Q Consensus 651 -~lsp~~ik~~L~~TA~~ 667 (858)
.+++.+++..+..++..
T Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 381 NELTPAQVRNLIVTTAGL 398 (508)
T ss_pred ccCCHHHHHHHHhhcccc
Confidence 89999999998888874
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=207.37 Aligned_cols=154 Identities=22% Similarity=0.357 Sum_probs=100.6
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++||+|++||+|.||||-||||+.+.. .. ..++|.+.
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~nyn-----ae-----------------------asydfssn------ 194 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSNYN-----AE-----------------------ASYDFSSN------ 194 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcccC-----ce-----------------------eecccccC------
Confidence 6766 8999999999999999999999997533 11 11222221
Q ss_pred cCCCCCCCCCC--C--CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH
Q 003005 255 FNSSQDYASPF--D--GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA 330 (858)
Q Consensus 255 ~~~~~~~~~~~--d--~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~ 330 (858)
.+.+.|+ | -+.|||.|||-+++..+++.+ | .|||.+.++..+|+++. .+..|+++|-....
T Consensus 195 ----dpfpyprytddwfnshgtrcagev~aardngic--g------vgvaydskvagirmldq---pymtdlieansmgh 259 (629)
T KOG3526|consen 195 ----DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--G------VGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGH 259 (629)
T ss_pred ----CCCCCCcccchhhhccCccccceeeeeccCCce--e------eeeeeccccceeeecCC---chhhhhhhhcccCC
Confidence 1122222 2 368999999987766555543 2 59999999999999876 55677776543322
Q ss_pred H-CCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHh-----CCCEEEEecCCCCCC
Q 003005 331 Q-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPS 381 (858)
Q Consensus 331 ~-~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~ 381 (858)
+ ..++|.+.|||.......-+...+..-+|+-.-++ .|-++|.|.|..|.+
T Consensus 260 ep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 260 EPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred CCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 2 35789999999654321111122233334433333 468899999988864
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-17 Score=180.57 Aligned_cols=103 Identities=24% Similarity=0.294 Sum_probs=82.2
Q ss_pred ceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC---CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEE
Q 003005 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV 371 (858)
Q Consensus 295 ~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~v 371 (858)
...||||+|+|+.|++.+.. ..+++.++.+++.+ +++|||+|||....... ..+.+.++.+++.|..+||+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEE
Confidence 45799999999999987652 34577888888887 99999999998643211 223467888999999999999
Q ss_pred EEecCCCCCCCC-----------CCCCCCCceEEEeecccCc
Q 003005 372 VQAAGNTGPSPK-----------SMSSFSPWIFTVGAASHDR 402 (858)
Q Consensus 372 V~AAGN~g~~~~-----------~~~~~~p~vitVgA~~~~~ 402 (858)
|+||||+|.... .+|+.+|+|++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999997653 3578899999999987553
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=106.94 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=62.7
Q ss_pred EEEeecCcceEEEEEEEEcCC-CceEEEEeec--------CCc----------c-eEEEeecEEEEeCCCEEEEEEEEEE
Q 003005 759 ITIARLNQSRTVQRTLTNIAG-NETYSVGWSA--------PYG----------V-SMKVSPTHFSIASGEKQVLNVFFNA 818 (858)
Q Consensus 759 i~~~~~~~~~~~~~tv~n~~~-~~ty~~~~~~--------~~~----------~-~v~~~p~~~tl~~g~s~~~~v~~~~ 818 (858)
|+|.++....+++++|+|.++ ..+|++++.. ..| . .+++++.+|||+||++++|+|+|++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 345666566788899999999 9999988651 011 1 5777899999999999999999999
Q ss_pred ec----CCCCeEEEEEEEEeCCcc-EEEEeEE
Q 003005 819 TT----SGTAASFGRIGLFGNQGH-IVNIPLS 845 (858)
Q Consensus 819 ~~----~~~~~~~G~i~~~~~~~~-~l~iP~~ 845 (858)
++ ..+.+++|||.|+++++. .||||||
T Consensus 81 p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 81 PSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 88 457899999999998775 9999997
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=90.74 Aligned_cols=102 Identities=23% Similarity=0.321 Sum_probs=72.1
Q ss_pred CCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHH
Q 003005 458 NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYY 537 (858)
Q Consensus 458 ~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~ 537 (858)
.+...+++|||+||.+ |.|.+.+|+.+++.+||.|+|++|+..............+|.+.| +.+++..|++++
T Consensus 40 d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~I-s~~dG~~L~~~l 112 (143)
T cd02133 40 DFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFI-SKEDGEALKAAL 112 (143)
T ss_pred ccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEe-cHHHHHHHHHHH
Confidence 3445678999999998 568899999999999999999999875321111112346888887 789999999998
Q ss_pred hcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCC
Q 003005 538 NSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583 (858)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt 583 (858)
++ . ..+.+..+ .. ....+.++.||||||+
T Consensus 113 ~~-~-------~~i~~~~~--------~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 113 ES-S-------KKLTFNTK--------KE-KATNPDLADFSSRGPW 141 (143)
T ss_pred hC-C-------CeEEEEec--------cc-cccCCccccccCcCCC
Confidence 76 1 11222211 11 2234569999999997
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=78.40 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=40.8
Q ss_pred CCceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccc
Q 003005 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (858)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~ 160 (858)
..+.++++.|+..+|||+++++++++++|+++|+|++|+|+..+++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l 81 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL 81 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence 4468999999989999999999999999999999999999998865
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-06 Score=79.44 Aligned_cols=117 Identities=24% Similarity=0.370 Sum_probs=86.2
Q ss_pred EEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcc-hHHH
Q 003005 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS-TIKQ 486 (858)
Q Consensus 408 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~-~~~~ 486 (858)
++++||+++.++++.+.....+++++..... .......|. ...+...+++|||++|.++ .+ .+..
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~-------~~~~~~~C~-~~~~~~~~v~GkIVlc~~~------~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANS-------GDVDASLCL-PGSLDPSKVKGKIVLCDRG------GNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcC-------CCCccccCC-CCCCChhhccccEEEEeCC------CCccHHH
Confidence 5788999999999986543366776633211 113457786 3445557899999999883 45 7788
Q ss_pred HHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcc
Q 003005 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 487 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~ 540 (858)
+..++++.||.|+|++++....... ......+|.+.| ..+++..|++|+++.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~~~-~~~~~~iP~v~I-~~~~g~~l~~y~~~~ 119 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGLDV-VADAHVLPAVHV-DYEDGTAILSYINST 119 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCcee-cccccccceEEE-CHHHHHHHHHHHHcC
Confidence 9999999999999999977643222 222567999998 779999999999875
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=97.36 Aligned_cols=158 Identities=21% Similarity=0.252 Sum_probs=97.2
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+++.|+|.|+|++..||++....- +...| ++...
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~~-----~~~s~-----------------------d~~~~------ 66 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNYD-----PLGSY-----------------------DVNRH------ 66 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCcccccccC-----cceeE-----------------------eeecC------
Confidence 6665 7999999999999999999999997532 22222 22111
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH-CC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DG 333 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~-~g 333 (858)
-+...+..+......|||-|++-++...++... ..|+++++++..++++... .++...+...... .-
T Consensus 67 ~~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 67 DNDPEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC----VSDAVEAPSLGFGPCH 134 (431)
T ss_pred CCCcccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee----cccceecccccCCCCC
Confidence 011111222234588999999998887533221 3599999999999987541 1122222222222 35
Q ss_pred CCEEEEccCCCCCCCCCCccCCHHHHHHHHHH-----hCCCEEEEecCCCCCCC
Q 003005 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSP 382 (858)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~ 382 (858)
+++-..|||......--..-......++..++ .+|-+.|+|.||.+...
T Consensus 135 ~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred ceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 78999999964322100111223333443333 47899999999998754
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.9e-06 Score=99.52 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=61.8
Q ss_pred ceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC-CEEEEccCCCCCC-CCCCccCCHHHHHHHHHHhCCCEEE
Q 003005 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-DIISLSITPNRRP-PGIATFFNPIDMALLSAAKAGIFVV 372 (858)
Q Consensus 295 ~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-~VIN~S~G~~~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV 372 (858)
...-+||+|+|..+-.-. .....+..++.+....=. -+|-.||+....- +....+.+.++.....|..+|+.++
T Consensus 287 ~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 346899999999876521 222233333333322211 2333566642111 1111245677777888899999999
Q ss_pred EecCCCCCCCCC--------CCCCCCceEEEee
Q 003005 373 QAAGNTGPSPKS--------MSSFSPWIFTVGA 397 (858)
Q Consensus 373 ~AAGN~g~~~~~--------~~~~~p~vitVgA 397 (858)
+|+|.+|....+ .|+.+|+|.+||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999876542 4688999999998
|
|
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.9e-05 Score=69.41 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=62.9
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcC---cccCCCCCCCCeEEecC
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG---FQLNPTPMKMPGIIIPS 526 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~~~~~~~~ip~~~i~~ 526 (858)
...|. ...+...+++|+|+|+.| |.|+|.+|..+|+++||.++|+||+..... .........||.++| +
T Consensus 30 ~~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s 101 (120)
T cd02129 30 SVLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-S 101 (120)
T ss_pred cCCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-e
Confidence 45676 445556678999999999 789999999999999999999999875311 111124567899887 7
Q ss_pred hhhHHHHHHHHhc
Q 003005 527 PDDSKILLQYYNS 539 (858)
Q Consensus 527 ~~~~~~l~~~~~~ 539 (858)
..+|..|++.+..
T Consensus 102 ~~dG~~i~~~l~~ 114 (120)
T cd02129 102 YKDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHHhcc
Confidence 8889999877654
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.2e-05 Score=68.84 Aligned_cols=75 Identities=25% Similarity=0.494 Sum_probs=58.2
Q ss_pred CCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC---cCcccCCCCCCCCeEEecChhhHHH
Q 003005 456 SSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV---IGFQLNPTPMKMPGIIIPSPDDSKI 532 (858)
Q Consensus 456 ~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~---~~~~~~~~~~~ip~~~i~~~~~~~~ 532 (858)
...+...+++|||+||.| |.|++.+|+.+++++||.|+|++|.... ...........||.++| +..++..
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 345567789999999988 7899999999999999999999992221 22233556788999999 8899999
Q ss_pred HHHHH
Q 003005 533 LLQYY 537 (858)
Q Consensus 533 l~~~~ 537 (858)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 98864
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00032 Score=65.60 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=62.9
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCc--c-cCC-CCCCCCeEEec
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF--Q-LNP-TPMKMPGIIIP 525 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~-~~~-~~~~ip~~~i~ 525 (858)
.+.|.. ..+...+++|||+||.| |.|.+.+|..+++++||.++|++|+...... . ... ....+|.++|
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 467864 34445678999999998 6788999999999999999999997763211 1 111 3456888887
Q ss_pred ChhhHHHHHHHHhcc
Q 003005 526 SPDDSKILLQYYNSS 540 (858)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (858)
+..+++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 779999999988654
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=67.36 Aligned_cols=82 Identities=10% Similarity=0.149 Sum_probs=62.1
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcC---cccC----CCCCCCCeE
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG---FQLN----PTPMKMPGI 522 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~~~----~~~~~ip~~ 522 (858)
.+.|..+.. ..+++|+|+|+.| |.|+|.+|..+|+++||.++|+||+..... ..+. .....||.+
T Consensus 21 ~~gC~~~~~--~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELRN--IHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCCC--ccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 467875332 4578999999999 789999999999999999999999765421 1111 234578888
Q ss_pred EecChhhHHHHHHHHhcc
Q 003005 523 IIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 523 ~i~~~~~~~~l~~~~~~~ 540 (858)
+| +..++..|++.+...
T Consensus 93 ~I-s~~dG~~L~~~l~~g 109 (118)
T cd02127 93 FL-LGKNGYMIRKTLERL 109 (118)
T ss_pred Ee-cHHHHHHHHHHHHcC
Confidence 87 778889998887654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=69.10 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=58.0
Q ss_pred CccccccceEEEEEeccccccCcch-----HHHHHHHHHhCCCeEEEEEECCCCcCcc---cC-CC-CCCCCeEEecChh
Q 003005 459 FNQDLVQGNLLICSYSIRFVLGLST-----IKQAFETAKNLSAAGIVFYMDPFVIGFQ---LN-PT-PMKMPGIIIPSPD 528 (858)
Q Consensus 459 ~~~~~~~Gkivl~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~~~~~---~~-~~-~~~ip~~~i~~~~ 528 (858)
+...+++|||+|+.| |.|. |.+|+.+|+++||.|+|+||+....+.. +. .. ...||.++| +..
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~~ 122 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DRA 122 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eHH
Confidence 445578999999999 6677 9999999999999999999998433321 11 22 468999998 788
Q ss_pred hHHHHHHHHhc
Q 003005 529 DSKILLQYYNS 539 (858)
Q Consensus 529 ~~~~l~~~~~~ 539 (858)
++..|++.+..
T Consensus 123 dG~~L~~~l~~ 133 (139)
T cd04817 123 DGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHhcC
Confidence 99999887754
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00027 Score=67.23 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=64.0
Q ss_pred CccccCCCCCC-ccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC-cCcc-c-CCCCCCCCeEEe
Q 003005 449 YVGECQDSSNF-NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV-IGFQ-L-NPTPMKMPGIII 524 (858)
Q Consensus 449 ~~~~c~~~~~~-~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~-~-~~~~~~ip~~~i 524 (858)
..+.|...... ...+..|+|+|+.| |.|+|.+|+.+|+.+||.++|+||+... .... + ......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 35678765542 34678999999998 7899999999999999999999998862 1111 1 222346887776
Q ss_pred cChhhHHHHHHHHhcc
Q 003005 525 PSPDDSKILLQYYNSS 540 (858)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (858)
+..+|..|++++...
T Consensus 117 -s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 -TNPKGMEILELLERG 131 (138)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999988654
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=66.45 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=62.8
Q ss_pred CccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcc--c---CCCCCCCCeEE
Q 003005 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ--L---NPTPMKMPGII 523 (858)
Q Consensus 449 ~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~--~---~~~~~~ip~~~ 523 (858)
..+.|... +..+++|+|+|+.| |.|+|.+|+.+++++||+++|+||+....+.. . ......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 35678644 55788999999998 78999999999999999999999977642211 1 12345788888
Q ss_pred ecChhhHHHHHHHHhcc
Q 003005 524 IPSPDDSKILLQYYNSS 540 (858)
Q Consensus 524 i~~~~~~~~l~~~~~~~ 540 (858)
+ +..++..|..+++.+
T Consensus 97 I-s~~~g~~L~~l~~~~ 112 (117)
T cd04813 97 T-SRTSYHLLSSLLPKS 112 (117)
T ss_pred E-cHHHHHHHHHhcccc
Confidence 8 688999998876543
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00025 Score=66.60 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=62.2
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCc-----Cc-c--cCC---CCCC
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-----GF-Q--LNP---TPMK 518 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~-~--~~~---~~~~ 518 (858)
...|.... ...+++|||+|+.| |.|+|.+|+.+|+++||.++|++|+.... .. . ... ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46787433 25568999999999 78999999999999999999999876532 11 1 111 2457
Q ss_pred CCeEEecChhhHHHHHHHHhccc
Q 003005 519 MPGIIIPSPDDSKILLQYYNSSL 541 (858)
Q Consensus 519 ip~~~i~~~~~~~~l~~~~~~~~ 541 (858)
||.++| +..+|..|++.+....
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~~ 120 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEHQ 120 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhCC
Confidence 888887 7788999998886643
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=65.78 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=60.1
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhh
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDD 529 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~ 529 (858)
.+.|....... .+++|+|+|+.| |.|.+.+|+.+++++||+++|+||+....-.........++.+.+ ..+
T Consensus 41 ~~gC~~~~~~~-~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~~ 111 (129)
T cd02124 41 DDACQPLPDDT-PDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PED 111 (129)
T ss_pred cccCcCCCccc-ccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HHH
Confidence 46787543322 368999999998 679999999999999999999999775321111223344566655 899
Q ss_pred HHHHHHHHhcc
Q 003005 530 SKILLQYYNSS 540 (858)
Q Consensus 530 ~~~l~~~~~~~ 540 (858)
|..|++.+...
T Consensus 112 G~~l~~~l~~G 122 (129)
T cd02124 112 GEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHhcC
Confidence 99999887654
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00041 Score=65.05 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=62.8
Q ss_pred ccccCCCCCCc-cc----cccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCccc----------CC
Q 003005 450 VGECQDSSNFN-QD----LVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL----------NP 514 (858)
Q Consensus 450 ~~~c~~~~~~~-~~----~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----------~~ 514 (858)
.+.|....... +. ...++|+|+.| |.|+|.+|+.+|+++||+++|+||+....-... ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 56788665533 22 36789999999 789999999999999999999999865321111 11
Q ss_pred CCCCCCeEEecChhhHHHHHHHHhccc
Q 003005 515 TPMKMPGIIIPSPDDSKILLQYYNSSL 541 (858)
Q Consensus 515 ~~~~ip~~~i~~~~~~~~l~~~~~~~~ 541 (858)
....||.++| +..++..|++.+....
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g~ 121 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNGE 121 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcCC
Confidence 2346888887 6789999998876543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00047 Score=64.06 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=61.9
Q ss_pred CccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCc-Cccc--CCCCCCCCeEEec
Q 003005 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQL--NPTPMKMPGIIIP 525 (858)
Q Consensus 449 ~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~--~~~~~~ip~~~i~ 525 (858)
....|..... ..+++|||+||.+ +.|++..|..++.++||.|+|++|+.... .+.. ......+|.+.|
T Consensus 26 ~~~~C~~~~~--~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 26 NTDGCTAFTN--AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMI- 96 (118)
T ss_pred cccccCCCCc--CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEe-
Confidence 3567865443 2359999999987 56889999999999999999999987641 1111 112356888887
Q ss_pred ChhhHHHHHHHHhcc
Q 003005 526 SPDDSKILLQYYNSS 540 (858)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (858)
+..++..|++|+...
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 788999999998754
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00052 Score=65.62 Aligned_cols=80 Identities=13% Similarity=0.237 Sum_probs=60.6
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCc-CcccC----CCCCCCCeEEe
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQLN----PTPMKMPGIII 524 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~----~~~~~ip~~~i 524 (858)
.+.|.... .+++|+|+|+.| |.|+|.+|+.+++++||.++|+||+.... .+... .....||.++|
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999998 78999999999999999999999976531 11111 11457886665
Q ss_pred cChhhHHHHHHHHhcc
Q 003005 525 PSPDDSKILLQYYNSS 540 (858)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (858)
+..+|..|++.+...
T Consensus 118 -s~~~G~~L~~~l~~g 132 (139)
T cd02132 118 -PQSAGDALNKSLDQG 132 (139)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999888654
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00057 Score=64.04 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=63.7
Q ss_pred CccccCCCC-CCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCccc-C----CCCCCCCeE
Q 003005 449 YVGECQDSS-NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL-N----PTPMKMPGI 522 (858)
Q Consensus 449 ~~~~c~~~~-~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-~----~~~~~ip~~ 522 (858)
....|.... .+...+++|||+||.+ +.|.+..|+.+++++||+|+|++++........ . .....+|.+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEE
Confidence 356675322 1456778999999987 568899999999999999999999876321111 1 244678988
Q ss_pred EecChhhHHHHHHHHhcc
Q 003005 523 IIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 523 ~i~~~~~~~~l~~~~~~~ 540 (858)
.| +..++..|++++.+.
T Consensus 103 ~i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 103 GI-SYADGEALLSLLEAG 119 (126)
T ss_pred Ee-CHHHHHHHHHHHhcC
Confidence 88 789999999998753
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00063 Score=66.14 Aligned_cols=84 Identities=13% Similarity=0.248 Sum_probs=63.3
Q ss_pred ccccCCCCCC--ccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccC--C---CCCCCCeE
Q 003005 450 VGECQDSSNF--NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLN--P---TPMKMPGI 522 (858)
Q Consensus 450 ~~~c~~~~~~--~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~--~---~~~~ip~~ 522 (858)
.+.|...... ......|+|+|+.| |.|+|.+|+.+|+++||.++|++|+.......+. . ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 4578754432 23678999999999 7899999999999999999999998654222211 1 24578998
Q ss_pred EecChhhHHHHHHHHhcc
Q 003005 523 IIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 523 ~i~~~~~~~~l~~~~~~~ 540 (858)
+| +..++..|+.++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 88 778899998887654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00094 Score=62.42 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=59.7
Q ss_pred cccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCc---ccCCCCCCCCeEEecCh
Q 003005 451 GECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF---QLNPTPMKMPGIIIPSP 527 (858)
Q Consensus 451 ~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~ip~~~i~~~ 527 (858)
..|... .+ +.+++|||+|+.| |.|.+.+|+.+++++||.++|+||+...... ........+|.+.| +.
T Consensus 32 ~gC~~~-~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s~ 102 (122)
T cd02130 32 LGCDAA-DY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-SQ 102 (122)
T ss_pred CCCCcc-cC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-cH
Confidence 456532 22 2468999999998 6788999999999999999999997732111 11223456888876 77
Q ss_pred hhHHHHHHHHhcc
Q 003005 528 DDSKILLQYYNSS 540 (858)
Q Consensus 528 ~~~~~l~~~~~~~ 540 (858)
+++..|++.+.+.
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887654
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0068 Score=57.03 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=56.2
Q ss_pred CccccccceEEEEEeccccccCcc--hHHHHHHHHHhCCCeEEEEEECCCCcCc--c---c-CCCCCCCCeEEecChhhH
Q 003005 459 FNQDLVQGNLLICSYSIRFVLGLS--TIKQAFETAKNLSAAGIVFYMDPFVIGF--Q---L-NPTPMKMPGIIIPSPDDS 530 (858)
Q Consensus 459 ~~~~~~~Gkivl~~~~~~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~---~-~~~~~~ip~~~i~~~~~~ 530 (858)
+...+++|||+++.+ +.+ ++..++.++.++||+|+|++|+....-. . . ......+|.+.| +.+++
T Consensus 38 ~~~~~v~GkIvlv~~------g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~edg 110 (127)
T cd04819 38 FDGLDLEGKIAVVKR------DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGEDG 110 (127)
T ss_pred cCCCCCCCeEEEEEc------CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHHH
Confidence 334568999999998 455 7889999999999999999986543211 1 1 123457999987 78899
Q ss_pred HHHHHHHhcc
Q 003005 531 KILLQYYNSS 540 (858)
Q Consensus 531 ~~l~~~~~~~ 540 (858)
..|.+.++..
T Consensus 111 ~~L~~~l~~g 120 (127)
T cd04819 111 LRLARVAERN 120 (127)
T ss_pred HHHHHHHhcC
Confidence 9999888653
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.13 Score=46.20 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=62.1
Q ss_pred EEEeecC--cceEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEeC
Q 003005 759 ITIARLN--QSRTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGN 835 (858)
Q Consensus 759 i~~~~~~--~~~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~ 835 (858)
|.++++. ...+.+.+|+|.+. ...|.+.........++++|..-.|+||++.++.|++.++...+. +++.|.+.-.
T Consensus 11 ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~-~~~~l~i~~e 89 (102)
T PF14874_consen 11 LDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLGD-YEGSLVITTE 89 (102)
T ss_pred EEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCce-EEEEEEEEEC
Confidence 4444443 33455678899999 889988754323446778888888999999999999996554444 5799999754
Q ss_pred CccEEEEeEEEE
Q 003005 836 QGHIVNIPLSVV 847 (858)
Q Consensus 836 ~~~~l~iP~~~~ 847 (858)
+..+.||.-..
T Consensus 90 -~~~~~i~v~a~ 100 (102)
T PF14874_consen 90 -GGSFEIPVKAE 100 (102)
T ss_pred -CeEEEEEEEEE
Confidence 45778886543
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.088 Score=44.82 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=35.2
Q ss_pred ceEEEEEEEEcCC--CceEEEEeecCCcceEEEeecEE-EEeCCCEEEEEEEEEEecCC
Q 003005 767 SRTVQRTLTNIAG--NETYSVGWSAPYGVSMKVSPTHF-SIASGEKQVLNVFFNATTSG 822 (858)
Q Consensus 767 ~~~~~~tv~n~~~--~~ty~~~~~~~~~~~v~~~p~~~-tl~~g~s~~~~v~~~~~~~~ 822 (858)
..+++.+|+|.+. .....+++..|.|-++..++.++ .|+||+++++++++++|...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 3467789999886 34567777778887766777665 69999999999999999863
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=49.28 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=54.4
Q ss_pred CccccccceEEEEEeccccccCcchHHHH-------HHHHHhCCCeEEEEEECCCC------cCcccC-CCCCCCCeEEe
Q 003005 459 FNQDLVQGNLLICSYSIRFVLGLSTIKQA-------FETAKNLSAAGIVFYMDPFV------IGFQLN-PTPMKMPGIII 524 (858)
Q Consensus 459 ~~~~~~~Gkivl~~~~~~~~~g~~~~~~~-------~~~~~~~Ga~g~i~~n~~~~------~~~~~~-~~~~~ip~~~i 524 (858)
+...+++|||+++.++.+.......+..+ ...+.++||.|+|++|.... .+.... .....+|.+.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 34567999999999854311111155555 68999999999999985422 222222 33456999997
Q ss_pred cChhhHHHHHHHHhcc
Q 003005 525 PSPDDSKILLQYYNSS 540 (858)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (858)
+.+++..|...+...
T Consensus 113 -s~ed~~~L~r~l~~g 127 (134)
T cd04815 113 -SVEDADMLERLAARG 127 (134)
T ss_pred -chhcHHHHHHHHhCC
Confidence 778888888877654
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.6 Score=43.37 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=47.2
Q ss_pred cceEEEEEEEEcCC-CceEEEEeec----CCc--------------c------eEEEeecEEEEeCCCEEEEEEEEEEec
Q 003005 766 QSRTVQRTLTNIAG-NETYSVGWSA----PYG--------------V------SMKVSPTHFSIASGEKQVLNVFFNATT 820 (858)
Q Consensus 766 ~~~~~~~tv~n~~~-~~ty~~~~~~----~~~--------------~------~v~~~p~~~tl~~g~s~~~~v~~~~~~ 820 (858)
.+.++.++|+|.++ +.+|.+.+.. ..| + -+++ |..|+|+||++++|++++++|+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcCC
Confidence 45678889999998 8888876421 111 0 1233 4569999999999999999998
Q ss_pred C-CCCeEEEEEEEE
Q 003005 821 S-GTAASFGRIGLF 833 (858)
Q Consensus 821 ~-~~~~~~G~i~~~ 833 (858)
. -...+-|=|+|+
T Consensus 106 ~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAFDGIILGGIYFS 119 (121)
T ss_pred CCcCCEEEeeEEEE
Confidence 6 244444667775
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.18 Score=48.02 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=47.1
Q ss_pred CceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccc------cCc------chHHHHHHHHHh
Q 003005 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV------LGL------STIKQAFETAKN 493 (858)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~------~g~------~~~~~~~~~~~~ 493 (858)
....++++.+... ....|. ...+...+++|||||+.++.+.. .+. .++..|...+.+
T Consensus 19 ~~~aelVfvGyGi----------~a~~~~-~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~ 87 (142)
T cd04814 19 IKDAPLVFVGYGI----------KAPELS-WDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAAR 87 (142)
T ss_pred ccceeeEEecCCc----------CCCCCC-hhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHH
Confidence 3456777665432 122343 34566678999999998853311 011 157789999999
Q ss_pred CCCeEEEEEECCC
Q 003005 494 LSAAGIVFYMDPF 506 (858)
Q Consensus 494 ~Ga~g~i~~n~~~ 506 (858)
+||.|+|++++..
T Consensus 88 ~GA~gvIii~~~~ 100 (142)
T cd04814 88 HGAAGVLIVHELA 100 (142)
T ss_pred CCCcEEEEEeCCC
Confidence 9999999999765
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.32 Score=46.93 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=38.6
Q ss_pred CCCccccccceEEEEEeccc-------cc-----cCcchHHHHHHHHHhCCCeEEEEEECCCC
Q 003005 457 SNFNQDLVQGNLLICSYSIR-------FV-----LGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (858)
Q Consensus 457 ~~~~~~~~~Gkivl~~~~~~-------~~-----~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 507 (858)
..+...+++|||+|+.++.. .. ...|++..|+.+|...||+|+|+|++...
T Consensus 39 ~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 39 DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 34556789999999987521 00 12267889999999999999999998754
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.28 Score=45.36 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=39.6
Q ss_pred eEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCC
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSG 822 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~ 822 (858)
..++.+|.|.+. +.+|++++....++++......++|+||++.++.|.+.+|...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 357789999999 9999999988778888665689999999999999999999863
|
|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.42 Score=45.32 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCCccccccceEEEEEeccccccC------cchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 457 SNFNQDLVQGNLLICSYSIRFVLG------LSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 457 ~~~~~~~~~Gkivl~~~~~~~~~g------~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
.++...+++|||+|+.++.+...+ ...+..|..+|..+||.|+|++++..
T Consensus 41 ~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 41 DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 345567899999999985431111 02477899999999999999999765
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.11 Score=51.50 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=34.9
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
.+++|||+|+.+ |.|.+.+|+.+|+.+||+|+|+|++..
T Consensus 52 v~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 52 VSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 468999999999 577889999999999999999998753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.3 Score=41.85 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=48.6
Q ss_pred EEEEEEcCC--CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEe
Q 003005 771 QRTLTNIAG--NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFG 834 (858)
Q Consensus 771 ~~tv~n~~~--~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~ 834 (858)
...|.|..+ -+..+++.......++--.|..++|.|++.+++..++++.+....+++|+|++..
T Consensus 74 DvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 74 DVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 345566554 2333444444555666667899999999999999999999999999999999863
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.48 Score=52.87 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=52.7
Q ss_pred cccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC-----cCcccCCCCCCCCeEEecChhhHHHHHH
Q 003005 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV-----IGFQLNPTPMKMPGIIIPSPDDSKILLQ 535 (858)
Q Consensus 461 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-----~~~~~~~~~~~ip~~~i~~~~~~~~l~~ 535 (858)
....+|+++++.| |.|.|..|...|+++||.++++.|+..+ .+.........||.+.+ +.++++.+..
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi-~~~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMI-SYSDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEE-EhhhHHHHHh
Confidence 4567899999999 8999999999999999999999998543 22222334567888887 6677776664
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.85 E-value=2 Score=48.05 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=51.7
Q ss_pred ceEEEEEEEEcCC--CceEEEEeecCCcceEEEeecEE-EEeCCCEEEEEEEEEEecCC-CCeEEEEEEEEeC
Q 003005 767 SRTVQRTLTNIAG--NETYSVGWSAPYGVSMKVSPTHF-SIASGEKQVLNVFFNATTSG-TAASFGRIGLFGN 835 (858)
Q Consensus 767 ~~~~~~tv~n~~~--~~ty~~~~~~~~~~~v~~~p~~~-tl~~g~s~~~~v~~~~~~~~-~~~~~G~i~~~~~ 835 (858)
..++...+.|.|+ =...++++..|+|-.+.+++.++ .|+||++.+|++++++|... ..-|.=.|.-++|
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 4566778899997 34566788889999999998876 56899999999999999874 2233344555544
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.54 Score=44.93 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=33.5
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
-+++|||+++.. |......|+.+|+..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 468999999998 455567899999999999999998764
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.84 Score=46.99 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=34.6
Q ss_pred cccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC
Q 003005 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (858)
Q Consensus 461 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 507 (858)
..+++|||+|+.+ |.+....|+.+|+.+||+|+|+|++...
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4578999999988 4555678999999999999999997653
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG | Back alignment and domain information |
|---|
Probab=83.06 E-value=4 Score=46.64 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=46.6
Q ss_pred eEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecC
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTS 821 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~ 821 (858)
..++.++.|.+. +.+|+++++...++++...+..|+|+||++.++.|.+.++..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechh
Confidence 356778999998 999999998888888887645899999999999999998864
|
Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum. |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.97 E-value=16 Score=41.20 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=45.2
Q ss_pred ceEEEEEEEEcCC-CceEEEEee-cCCcceEEEe-----ecEEEEeCCCEEEEEEEEEEecC
Q 003005 767 SRTVQRTLTNIAG-NETYSVGWS-APYGVSMKVS-----PTHFSIASGEKQVLNVFFNATTS 821 (858)
Q Consensus 767 ~~~~~~tv~n~~~-~~ty~~~~~-~~~~~~v~~~-----p~~~tl~~g~s~~~~v~~~~~~~ 821 (858)
+..+++++.|.+. +.+|.++.. .|.+-+..|. -+++.|.||++++|+|.+.++..
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n 346 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN 346 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC
Confidence 4567888999999 999999987 6766555543 23799999999999999999886
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 858 | ||||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 8e-49 | ||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-48 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 3e-05 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 5e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 8e-04 |
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 509 bits (1311), Expect = e-171
Identities = 203/691 (29%), Positives = 310/691 (44%), Gaps = 80/691 (11%)
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TT + FLG P + +V+G +DTGI P PSF D+ P P +
Sbjct: 1 TTRSWDFLGFPLTVPRRSQ----VESNIVVGVLDTGIWPESPSFDDE---GFSPPPPKWK 53
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
G CE + +F CNRK+IGAR + G S D P D +GHG+HTAS AAG
Sbjct: 54 GTCETSNNFR---CNRKIIGARSYHI-----GRPISPGDVNGPRDTNGHGTHTASTAAGG 105
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
+ G G A G P + IA YK + G D++AA D A DGVDIISLS+
Sbjct: 106 LVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSV 164
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
F + I + A + GI +AGN GP+ + +S SPW+ +V A++ D
Sbjct: 165 GG---ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 221
Query: 402 RIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQ 461
R + + +GN + GV + ++ Y L+S N + + C D S N
Sbjct: 222 RKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRF---CTDKS-VNP 277
Query: 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPG 521
+L++G +++C S K A L + Y D + + P
Sbjct: 278 NLLKGKIVVCEASFGPH---EFFKSLDGAAGVLMTSNTRDYADSYPL-----------PS 323
Query: 522 IIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581
++ P+D L+Y S A I + SAP ++ +S+RG
Sbjct: 324 SVL-DPNDLLATLRYIYSIR------------SPGATIFKS-TTILNASAPVVVSFSSRG 369
Query: 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGL 641
P+ D++KP++ PG I AAW S+ + F ++SGTSM+ PHI G+
Sbjct: 370 PNR-----ATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGI 424
Query: 642 AALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFV 701
A +K P++SP+AI SAL T+A+ + P F GSG V
Sbjct: 425 ATYVKTYNPTWSPAAIKSALMTTASPMNARFN----------------PQAEFAYGSGHV 468
Query: 702 NATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQN-CWAYNSTISGADLNLPSIT 760
N ++ PGLV+DA+ +DY+ FLCG ++ V TG +T DLN PS
Sbjct: 469 NPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFG 528
Query: 761 IA---RLNQSRTVQRTLTNIA-GNETYSVGWSAPYGVSMKVSPTHFSI-ASGEKQVLNVF 815
++ ++ RTLT++A TY SAP G+++ V+P S G+++ +
Sbjct: 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588
Query: 816 FNATTSGTAASFGRIGLFGNQGHIVNIPLSV 846
+ G + ++ + H V P+++
Sbjct: 589 VRGSIKGFVV-SASL-VWSDGVHYVRSPITI 617
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 510 bits (1314), Expect = e-171
Identities = 207/701 (29%), Positives = 312/701 (44%), Gaps = 75/701 (10%)
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TTHT FL L + + G+ V++ +D+GI P SF DD +P +
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG--LGQDVIVAVLDSGIWPESASFQDD---GMPEIPKRWK 55
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
GIC+ F + CNRKLIGA +F + + S D DGHG+H AS+ AGN
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGN 114
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSI 341
V G+ G A G+APR+ +AVYK + G F +D++AA+DQA DGVD+IS+S
Sbjct: 115 FAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISISY 173
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
P + + I +A A G+ V +AGN GP S+++ SPWI V + D
Sbjct: 174 GYRFIP----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229
Query: 402 RIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNF 459
R + ++ LGN L I G L P + +I + ++ +
Sbjct: 230 RTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSS------------EELLS 277
Query: 460 NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKM 519
+ + ++IC + F + I +A +F +
Sbjct: 278 QVENPENTIVICDDNGDFSDQMRIITRA-------RLKAAIFISED---PGVFRSATFPN 327
Query: 520 PGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579
PG+++ + + K ++ Y +S A I + AP + SA
Sbjct: 328 PGVVV-NKKEGKQVINYVKNS------------VTPTATITFQETYLDTKPAPVVAASSA 374
Query: 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSL----GTDSVEFQGESFAMMSGTSMAA 635
RGP I KP+++APG I AA+ + + + SGTSMAA
Sbjct: 375 RGPSR-----SYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAA 429
Query: 636 PHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFD 695
PH AG+AA++K P +SPSAI SA+ T+A D PI K +N ATP D
Sbjct: 430 PHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI-------KDSDNNKAATPLD 482
Query: 696 MGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLN 755
MG+G V+ +LDPGLV+DA+ DY++ LC +N + + ++N + ADLN
Sbjct: 483 MGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA-SHNCSNPSADLN 541
Query: 756 LPS-ITIARLNQS-----RTVQRTLTNIA-GNETYSVGWSAPYGVSMKVSPTHFSIAS-G 807
PS I + + + + +RT+TN+ G TY AP ++ VSP +
Sbjct: 542 YPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKN 601
Query: 808 EKQVLNVFFNATT-SGTAASFGRIGLFGNQG-HIVNIPLSV 846
EKQ + G + + G I G H V P+
Sbjct: 602 EKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVT 642
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 335 bits (859), Expect = e-101
Identities = 104/680 (15%), Positives = 202/680 (29%), Gaps = 112/680 (16%)
Query: 173 QGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPS 232
+ ++ G G G V+ ID G D H ++ E +
Sbjct: 7 KTLQ-EKAGK---GAGTVVAVIDAGFDKNHEAWRLTDK---TKARYQSKEDLEKAKKEHG 59
Query: 233 GS----CNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVV 288
+ N K+ ++ HG+H + + +GN
Sbjct: 60 ITYGEWVNDKVAYYHDYS-------------KDGKTAVDQEHGTHVSGILSGN----APS 102
Query: 289 TGHHFGNASGMAPRSHIAVYKALYKSFGG-FAADVVAAIDQAAQDGVDIISLSITPNRRP 347
G P + + + + + +A + AI A G +I++S
Sbjct: 103 ETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNA--A 160
Query: 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAASH-DRI 403
A + A A G+ +V +AGN P VG + D
Sbjct: 161 LAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST 220
Query: 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDL 463
T + + V + + + D Y +F
Sbjct: 221 LTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFK--D 278
Query: 464 VQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGII 523
V+G + + G K AK A G++ Y + P +MP
Sbjct: 279 VKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAF 332
Query: 524 IPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583
I S D +L ++ K + S K+ +S+ G
Sbjct: 333 I-SRKDGLLLKDNPQKTIT----------------FNATPKVLPTASGTKLSRFSSWGLT 375
Query: 584 PEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAA 643
+ +KP++ APG I ++ + +A +SGTSM+AP +AG+
Sbjct: 376 ADG-------NIKPDIAAPGQDILSSVA----------NNKYAKLSGTSMSAPLVAGIMG 418
Query: 644 LIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703
L+++++ + P S A + + ++ ++ +P G+G V+A
Sbjct: 419 LLQKQYETQYPDMTPSERLDLAKKVLMSSATAL------YDEDEKAYFSPRQQGAGAVDA 472
Query: 704 TASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSITIAR 763
+ + + D S LN +T+
Sbjct: 473 KKASAATMY--VTDKDNTSSKVH--------LNNVSDKF---------------EVTVNV 507
Query: 764 LNQSRTVQRTLT---NIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATT 820
N+S Q L + ++ ++ V + S +I + + + V +A+
Sbjct: 508 HNKSDKPQ-ELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASR 566
Query: 821 SGTAASFGRIGLFGNQGHIV 840
+ +G +
Sbjct: 567 FSKDLLAQMKNGYFLEGFVR 586
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 5e-31
Identities = 82/494 (16%), Positives = 150/494 (30%), Gaps = 116/494 (23%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
++ I ID+G D +H +
Sbjct: 17 SDSQAGNRTICIIDSGYDRSHNDLNAN--------------------------------- 43
Query: 242 ARHFAASAITRGI-FNSSQDYASPFDGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGM 299
G + + ++ P + + HG+H A ++AA + VV G+
Sbjct: 44 --------NVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAIANNEGVV----------GV 85
Query: 300 APRSH--IAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRRPPGIATFFNP 356
P + I + K ++ G+++ +VAAID G +++++S+ G +
Sbjct: 86 MPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL-------GGSGSTTT 138
Query: 357 IDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRI--YTNSIILGNS 413
AL + G+ ++ AAGN G S S + + +V A S+ ++ +
Sbjct: 139 ERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY---TDQ 195
Query: 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSY 473
+ IS PG + T+ L + T +
Sbjct: 196 VEIS----GPGEAILSTVTVGEGRLADITIGGQSYFSN---------------------- 229
Query: 474 SIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKIL 533
V+ + + + + + + M I
Sbjct: 230 ---GVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV-----ER 281
Query: 534 LQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDAD 593
+ SS TK GA I+ A P A S D
Sbjct: 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNP--FLVDANSDITVPSVSVDRA 339
Query: 594 IMKPNLVAPGNSI-WAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSF 652
G S + + + +GTSMA PH++G+A L+ P
Sbjct: 340 TGLALKAKLGQSTTVSNQG----------NQDYEYYNGTSMATPHVSGVATLVWSYHPEC 389
Query: 653 SPSAIASALSTSAT 666
S S + +AL+ +A
Sbjct: 390 SASQVRAALNATAD 403
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-25
Identities = 68/292 (23%), Positives = 110/292 (37%), Gaps = 78/292 (26%)
Query: 127 LINGFSVFVTPQQAEKLSRRRE-----------VANVVSDFSVRTATTHTPQFLGLPQ-- 173
+I +V + + ++ + V + D+ V+ A Q
Sbjct: 68 IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVM 127
Query: 174 --GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFP 231
W G G+ IG IDTGID +HP DF
Sbjct: 128 ATNMW----NLGYDGSGITIGIIDTGIDASHPDLQGKVIG---------------WVDFV 168
Query: 232 SGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGH 291
+G +P+D +GHG+H AS+AAG
Sbjct: 169 NGK---------------------------TTPYDDNGHGTHVASIAAGT-------GAA 194
Query: 292 HFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSITPNRRP 347
G GMAP + + K L G +D++ +D A Q+ G+ +I+LS+ ++
Sbjct: 195 SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSS 254
Query: 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGA 397
G + + A+ +A AG+ VV AAGN+GP+ ++ S + + TVGA
Sbjct: 255 DGT----DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 7e-21
Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 37/242 (15%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+ I +S+RGP ++ +KP +VAPGN I AA +S GT + + +
Sbjct: 303 VDKYDVITDFSSRGPTADNR-------LKPEVVAPGNWIIAARAS-GTSMGQPINDYYTA 354
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
GT+MA PH+AG+AAL+ Q PS++P + +AL +A
Sbjct: 355 APGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETAD------------------IVK 396
Query: 688 QSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNS 747
G+G VNA + ++ Y+S + S ++ G
Sbjct: 397 PDEIADIAYGAGRVNAYKAAYYDNYAKLTFTGYVS--NKGSQSHQFTISGAGFVTATLYW 454
Query: 748 TISGADLNL------PSITIARLNQSRTVQRTLTNIAGNETYSV---GWSAPYGVSMKVS 798
SG+DL+L + ++ T+++ +S + V
Sbjct: 455 DNSGSDLDLYLYDPNGNQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYSGSANYQVDVV 514
Query: 799 PT 800
Sbjct: 515 SD 516
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 5e-24
Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 75/251 (29%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G V + ID+GID +HP D K+ G
Sbjct: 21 YTGSNVKVAVIDSGIDSSHP-------------------------DL-------KVAGGA 48
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPR 302
+ + + + D + HG+H A VAA N+ I V+ G+AP
Sbjct: 49 SM--------VPSETNPFQ---DNNSHGTHVAGTVAALNNSIGVL----------GVAPS 87
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+ + K L G + ++ I+ A + +D+I++S+ G + + A+
Sbjct: 88 ASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSL-------GGPSGSAALKAAVD 140
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSP----WIFTVGA-ASHDRI--YTNSIILGNSLT 415
A +G+ VV AAGN G S S + P + VGA S ++ +++ G L
Sbjct: 141 KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV---GPELD 197
Query: 416 ISGVGLAPGTD 426
+ APG
Sbjct: 198 VM----APGVS 204
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 45/141 (31%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S+ + +S+ GP+ + ++APG SI + G +
Sbjct: 180 VDSSNQRASFSSVGPELD-------------VMAPGVSIQSTLP----------GNKYGA 216
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+GTSMA+PH+AG AALI K P+++ + + S+L + T
Sbjct: 217 YNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT--------------------- 255
Query: 688 QSPATPFDMGSGFVNATASLD 708
F G G +N A+
Sbjct: 256 -KLGDSFYYGKGLINVQAAAQ 275
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 6e-24
Identities = 62/305 (20%), Positives = 92/305 (30%), Gaps = 87/305 (28%)
Query: 126 YLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYE-- 183
LI V V KL + V V D + G Q A G E
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 184 ----------TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSG 233
+ + + +DTG+D HP A + + G
Sbjct: 91 KAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAW---------------CVSTLRG 135
Query: 234 SCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHH 292
S D +GHG+H +AA N+ I VV
Sbjct: 136 ----------------------KVSTKLRDCADQNGHGTHVIGTIAALNNDIGVV----- 168
Query: 293 FGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-------------------- 332
G+AP I + L G +D+ I+QA
Sbjct: 169 -----GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDD 223
Query: 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWI 392
++IS+S+ G + + ++ A AGI +V A+GN G S + P +
Sbjct: 224 AAEVISMSL-------GGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEV 276
Query: 393 FTVGA 397
VGA
Sbjct: 277 IAVGA 281
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 31/141 (21%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S I +S R P+ + APG I + + +S+
Sbjct: 282 IDSNDNIASFSNRQPE---------------VSAPGVDILSTYP----------DDSYET 316
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+ GT+MA PH++G+ ALI+ + + + G I+ A
Sbjct: 317 LMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRG--ILHITADDLGPTG 374
Query: 688 QSPATPFDMGSGFVNATASLD 708
G G V A ++
Sbjct: 375 WDADY----GYGVVRAALAVQ 391
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 63/269 (23%), Positives = 100/269 (37%), Gaps = 84/269 (31%)
Query: 170 GLPQ----GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICE 225
G+P G V + +DTGI +HP
Sbjct: 7 GIPLIKADKVQ----AQGFKGANVKVAVLDTGIQASHP---------------------- 40
Query: 226 VTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGI 284
D ++G F A A DG+GHG+H A VAA ++
Sbjct: 41 ---DL-------NVVGGASFVA------------GEAYNTDGNGHGTHVAGTVAALDNTT 78
Query: 285 PVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPN 344
V+ G+AP + K L S G + +V+ I+ A +G+D+I++S+
Sbjct: 79 GVL----------GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSL--- 125
Query: 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSP----WIFTVGAA-S 399
G A+ + A+ +A G+ VV AAGN+G S + + P + VGA S
Sbjct: 126 ----GGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS 181
Query: 400 HDRI--YTNSIILGNSLTISGVGLAPGTD 426
+ +++ G L + APG
Sbjct: 182 NSNRASFSSV---GAELEVM----APGAG 203
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 45/140 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S +S+ G + E ++APG +++ + ++A
Sbjct: 179 VDSNSNRASFSSVGAELE-------------VMAPGAGVYSTYP----------TNTYAT 215
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
++GTSMA+PH+AG AALI K P+ S S + + LS++AT
Sbjct: 216 LNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT--------------------- 254
Query: 688 QSPATPFDMGSGFVNATASL 707
+ F G G +N A+
Sbjct: 255 -YLGSSFYYGKGLINVEAAA 273
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-23
Identities = 49/355 (13%), Positives = 93/355 (26%), Gaps = 73/355 (20%)
Query: 71 FHKQNGTSGRLSRLNNPRNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLING 130
+ + N ++ Y++ + + + K + +Y+ ++
Sbjct: 19 YFQSNAMGSSHHHYHHENLYFQGSEELYYSVEYKNTATFNKLVKKKSLNVVYNIPE-LHV 77
Query: 131 FSVFVTPQQAEKLSR-RREVANVVSDFSVRTATTHTPQFL---------------GLPQG 174
+ +T A L+ + ++ + + S + T
Sbjct: 78 AQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGA 137
Query: 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGS 234
++ I IDTG+ H +
Sbjct: 138 SYDDLPK----HANTKIAIIDTGVMKNHDDLKN--------------------------- 166
Query: 235 CNRKLIGARHFAASAITRGIFNSSQ-DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHF 293
+++ RG D D GHG+ + + N
Sbjct: 167 --NFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSAN------------ 212
Query: 294 GNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS---------ITPN 344
G G+AP + +Y+ V AI QAA DG +I++S
Sbjct: 213 GKLIGVAPNNKFTMYRVFGSK-KTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQ 271
Query: 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399
++ + A+ A K VV AAGN G G
Sbjct: 272 TFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGE 326
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 22/148 (14%), Positives = 38/148 (25%), Gaps = 31/148 (20%)
Query: 562 GLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQ 621
+ FSN +A G D +I +
Sbjct: 347 SNLSEFSNFGMNYTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTAN---------- 396
Query: 622 GESFAMMSGTSMAAPHIAGLAALIKQKF-PSFSPSAIASALSTSATLYDKNGGPIMAQRA 680
+ +GT++A P ++G ALI K+ P L T +
Sbjct: 397 NGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS------ 450
Query: 681 YAKPDENQSPATPFDMGSGFVNATASLD 708
G G ++ +L+
Sbjct: 451 --------------RYGHGELDVYKALN 464
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 1e-22
Identities = 46/253 (18%), Positives = 73/253 (28%), Gaps = 30/253 (11%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+ I ID D T F +P + S + +
Sbjct: 44 QTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLK 103
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
+ + D + H H S G PV G+AP
Sbjct: 104 GKEK-----EEALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSPVF----------GIAP 148
Query: 302 RSHIAVYKALYKSFG-----GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNP 356
+ G ++ AID A + G +II + RP +
Sbjct: 149 NCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFC---RPTQTSEGEEI 205
Query: 357 IDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI---YTNSIILGNS 413
+ A+ + +V GN + + P VGAA D ++N G +
Sbjct: 206 LVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHFSNW---GGN 262
Query: 414 LTISGVGLAPGTD 426
T G+ LAPG +
Sbjct: 263 NTKEGI-LAPGEE 274
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 50/151 (33%)
Query: 562 GLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQ 621
G +FSN G + K ++APG I A
Sbjct: 251 GTPCHFSN----------WGGNNT----------KEGILAPGEEILGAQPC--------- 281
Query: 622 GESFAMMSGTSMAAPHIAGLAALIK----QKFPSFSPSAIASALSTSATLYDKNGGPIMA 677
E ++GTSMAAP + G++AL+ Q+ A+ +AL +A
Sbjct: 282 TEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAI----------- 330
Query: 678 QRAYAKPDENQSPATPFDMGSGFVNATASLD 708
P + + P GFVN ++
Sbjct: 331 ------PCDPEVVEEPERCLRGFVNIPGAMK 355
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 51/224 (22%), Positives = 81/224 (36%), Gaps = 65/224 (29%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
T G G+ I +DTG++ +HP + + +
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVN------------------------------NVEQCK 52
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAG---NHGIPVVVTGHHFGNASGMA 300
F ++ S D +GHG+H A A + + G+A
Sbjct: 53 DF--------TGATTPINNSCTDRNGHGTHVAGTALADGGSDQAGIY----------GVA 94
Query: 301 PRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-----DIISLSITPNRRPPGIATFFN 355
P + + YK L S G++ D+ AAI AA IIS+S+ G + +
Sbjct: 95 PDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSL-------GSSANNS 147
Query: 356 PIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGA 397
I A+ A G+ +V AAGN+G S ++ P V A
Sbjct: 148 LISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMM 628
N ++ YS+RG + + APG+S+++ W + +
Sbjct: 198 NGTYRVADYSSRGYISTAGDYVIQEG-DIEISAPGSSVYSTWY----------NGGYNTI 246
Query: 629 SGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGP 674
SGTSMA PH++GLAA I + PS S + + S L A D GG
Sbjct: 247 SGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY 292
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 63/301 (20%), Positives = 96/301 (31%), Gaps = 85/301 (28%)
Query: 143 LSRRREVANVVSDFSVRTATT--HTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDP 200
+ + R + D + + P W G G +IG IDTG
Sbjct: 1 MRKFRLIPYKQVDKVSALSEVPMGVEI-VEAPA-VW----RASAKGAGQIIGVIDTGCQV 54
Query: 201 THPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQD 260
HP A+ + + D
Sbjct: 55 DHPDLAERIIG---------------GVNLTTDYGG-----------------------D 76
Query: 261 YASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFA 319
+ D +GHG+H A VAA G VV G+AP++ + + KAL G
Sbjct: 77 ETNFSDNNGHGTHVAGTVAAAETGSGVV----------GVAPKADLFIIKALSGDGSGEM 126
Query: 320 ADVVAAIDQAAQD------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQ 373
+ AI A + II++S+ G T + A+ A + VV
Sbjct: 127 GWIAKAIRYAVDWRGPKGEQMRIITMSL-------GGPTDSEELHDAVKYAVSNNVSVVC 179
Query: 374 AAGNTGPSPKSMSSFS-----PWIFTVGA-ASHDRI--YTNSIILGNSLTISGVGLAPGT 425
AAGN G + + F+ + VGA R+ +TN+ + I APG
Sbjct: 180 AAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNT---NEEIDIV----APGV 232
Query: 426 D 426
Sbjct: 233 G 233
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAA 635
++ + + +VAPG I + + +A +SGT+MAA
Sbjct: 217 DFTNTNEEID-------------IVAPGVGIKSTYL----------DSGYAELSGTAMAA 253
Query: 636 PHIAGLAALIKQKFP-----SFSPSAIASALSTSAT 666
PH+AG ALI S S + I + L AT
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRAT 289
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 55/249 (22%), Positives = 86/249 (34%), Gaps = 71/249 (28%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA 242
G G I +DTG+ HP A G DF
Sbjct: 26 IAEGSGAKIAIVDTGVQSNHPDLAGKV----------VGGW-----DFVDND-------- 62
Query: 243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA--GNHGIPVVVTGHHFGNASGMA 300
++P +G+GHG+H A +AA N+ + G A
Sbjct: 63 -------------------STPQNGNGHGTHCAGIAAAVTNNSTGIA----------GTA 93
Query: 301 PRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMA 360
P++ I + L S G V I AA G +ISLS+ G + + A
Sbjct: 94 PKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSL-------GGTVGNSGLQQA 146
Query: 361 LLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRI--YTNSIILGNSLTIS 417
+ A G VV AAGN G + + ++ V + +D ++ G+ + ++
Sbjct: 147 VNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTY---GSWVDVA 203
Query: 418 GVGLAPGTD 426
APG+
Sbjct: 204 ----APGSS 208
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 46/141 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
++ +S G ++D + APG+SI++ + ++A
Sbjct: 184 TDQNDNKSSFSTYGS-----WVD--------VAAPGSSIYSTYP----------TSTYAS 220
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+SGTSMA PH+AG+A L+ + S S I +A+ +A
Sbjct: 221 LSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTAD--------------------- 257
Query: 688 QSPATPFDMGSGFVNATASLD 708
+ T G VNA ++
Sbjct: 258 KISGTGTYWAKGRVNAYKAVQ 278
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 60/248 (24%), Positives = 85/248 (34%), Gaps = 71/248 (28%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G I IDTG+D THP G DF
Sbjct: 28 KGSSGQEIAVIDTGVDYTHPDLDGKV----------IKGY-----DFVDND--------- 63
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAA--GNHGIPVVVTGHHFGNASGMAP 301
P D + HG+H A +AA N+ + GMAP
Sbjct: 64 ------------------YDPMDLNNHGTHVAGIAAAETNNATGIA----------GMAP 95
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMAL 361
+ I +AL ++ G +D+ AI AA G ++I+LS+ G ++ A+
Sbjct: 96 NTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSL-------GCDCHTTTLENAV 148
Query: 362 LSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRI---YTNSIILGNSLTISG 418
A G VV AAGN G S + + VGA ++N G + +
Sbjct: 149 NYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNY---GTWVDVV- 204
Query: 419 VGLAPGTD 426
APG D
Sbjct: 205 ---APGVD 209
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 46/141 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+ ++ +S G + +VAPG I + + G +A
Sbjct: 185 VDQYDRLASFSNYGTWVD-------------VVAPGVDIVSTIT----------GNRYAY 221
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
MSGTSMA+PH+AGLAAL+ + + I A+ +A
Sbjct: 222 MSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTAD--------------------- 258
Query: 688 QSPATPFDMGSGFVNATASLD 708
+ T G +N+ ++
Sbjct: 259 KISGTGTYFKYGRINSYNAVT 279
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 2e-21
Identities = 62/366 (16%), Positives = 110/366 (30%), Gaps = 101/366 (27%)
Query: 101 ISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160
R+ RR + + L+ +H L+ GF V ++ E + V + D SV
Sbjct: 95 ARRLQAQAARRGYLTKI---LHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 151
Query: 161 ATTHTPQFLGL----PQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPV 216
+ L P E G V + +DT I H
Sbjct: 152 QSIPW----NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI----------- 196
Query: 217 PSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS 276
R + ++ + D HG+H A
Sbjct: 197 ------------------------EGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAG 232
Query: 277 VAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD- 335
V +G +G+A + + + L G + + ++ + +
Sbjct: 233 VVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQ 278
Query: 336 -----IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGP-----SPKSM 385
++ L + + ++ A A+AG+ +V AAGN SP S
Sbjct: 279 PVGPLVVLLPLA--------GGYSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPAS- 329
Query: 386 SSFSPWIFTVGA-------ASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHAL 438
+P + TVGA + + TN G + + APG D +I A
Sbjct: 330 ---APEVITVGATNAQDQPVTLGTLGTNF---GRCVDL----FAPGED----IIGASSDC 375
Query: 439 NNNTTT 444
+ +
Sbjct: 376 STCFVS 381
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APG I A S T F SGTS AA H+AG+AA++ P + + +
Sbjct: 363 APGEDIIGASSDCST--------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQR 414
Query: 661 LSTSAT 666
L +
Sbjct: 415 LIHFSA 420
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 57/247 (23%), Positives = 89/247 (36%), Gaps = 73/247 (29%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G GV + +DTGI THP F G
Sbjct: 21 LTGSGVKVAVLDTGIS-THPDLNIRGG-----------------ASFVPGE--------- 53
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVVVTGHHFGNASGMAPR 302
S DG+GHG+H A +AA N+ I V+ G+AP
Sbjct: 54 ------------------PSTQDGNGHGTHVAGTIAALNNSIGVL----------GVAPS 85
Query: 303 SHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALL 362
+ + K L S G + + ++ A +G+ + +LS+ G + ++ A+
Sbjct: 86 AELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSL-------GSPSPSATLEQAVN 138
Query: 363 SAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRI--YTNSIILGNSLTISGV 419
SA G+ VV A+GN+G S + VGA ++ ++ G L I
Sbjct: 139 SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQY---GAGLDIV-- 193
Query: 420 GLAPGTD 426
APG +
Sbjct: 194 --APGVN 198
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 45/140 (32%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
++ +S G + +VAPG ++ + + G ++A
Sbjct: 174 TDQNNNRASFSQYGAGLD-------------IVAPGVNVQSTYP----------GSTYAS 210
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
++GTSMA PH+AG AAL+KQK PS+S I + L +AT
Sbjct: 211 LNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT--------------------- 249
Query: 688 QSPATPFDMGSGFVNATASL 707
S + GSG VNA A+
Sbjct: 250 -SLGSTNLYGSGLVNAEAAT 268
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 93.4 bits (231), Expect = 2e-19
Identities = 59/311 (18%), Positives = 102/311 (32%), Gaps = 66/311 (21%)
Query: 561 GGLKANFSNSAPK---IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDS 617
++A ++ + +++R P + + APG +I + +
Sbjct: 403 QMMEAEYAMREKLPGNVYTWTSRDPCIDGGQ-------GVTVCAPGGAIASVPQFTMS-- 453
Query: 618 VEFQGESFAMMSGTSMAAPHIAGLAALI----KQKFPSFSPSAIASALSTSATLYDKNGG 673
+M+GTSMAAPH+AG AL+ KQ+ +SP +I A+S +AT K G
Sbjct: 454 ------KSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT---KLGY 504
Query: 674 PIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSF--LCGINGSS 731
PF G G +N + + S ++ + F G N
Sbjct: 505 V-----------------DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK 547
Query: 732 PVVL-NYTGQNCWAYNSTISGADLNLPSITIARLNQSRTVQRTLTNIAGNETYSVGWSAP 790
+ L +N YN I + + A L IA
Sbjct: 548 GIHLRQGVQRNSIDYNVYI---EPIFYNDKEADPKDKFNFNVRLNLIASQPWVQC----- 599
Query: 791 YGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLF----GNQGHIVNIPLSV 846
++ G + + V + T I + +G + IP++V
Sbjct: 600 --------GAFLDLSYGTRSI-AVRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIPVTV 650
Query: 847 VARLSYNATTN 857
V + N
Sbjct: 651 VQPHVLESDQN 661
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 2e-18
Identities = 46/277 (16%), Positives = 87/277 (31%), Gaps = 59/277 (21%)
Query: 136 TPQQAEKLSRRREVANVVSDFSVRTATTHTPQF----LGLPQGAWIQEGGYETAGEGVVI 191
P +A KL +++ DF + ++ + + G+ T +
Sbjct: 166 NPGEASKLPWDKKILKENLDFELEMLNSYEKVYGDIKTSYDCILFPTADGWLTIVDTTEQ 225
Query: 192 GFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT 251
G +D + S + DF S S N
Sbjct: 226 GDLDQALRIGEYSRTHETRNV---------------DDFLSISVN--------------- 255
Query: 252 RGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKAL 311
+ + HG+H +S+A+GNH + G+AP + I
Sbjct: 256 --VHDEGNVLEVVGMSSPHGTHVSSIASGNHS---------SRDVDGVAPNAKIVSMTIG 304
Query: 312 YKSFGGF--AADVVAAIDQAAQ-----DGVDIISLSITPNRRPPGIATFFNPIDMALLSA 364
G +V A+ + + +D+I++S + ++
Sbjct: 305 DGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEV---V 361
Query: 365 AKAGIFVVQAAGNTGPSPKSMSSF----SPWIFTVGA 397
K G+ V +AGN GP+ ++ + P + VGA
Sbjct: 362 NKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGA 398
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 79/250 (31%)
Query: 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTR 228
+ P W G + + + +DTG+D HP A + + + +
Sbjct: 15 VKAPS-VWSITDG---SVSVIQVAVLDTGVDYDHPDLAANIAW----------CVSTLRG 60
Query: 229 DFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVV 287
+ + D +GHG+H +AA N+ I VV
Sbjct: 61 KVSTKLRD---------------------------CADQNGHGTHVIGTIAALNNDIGVV 93
Query: 288 VTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD--------------- 332
G+AP I + L G +D+ I+QA
Sbjct: 94 ----------GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG 143
Query: 333 -----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS 387
++IS+S+ G + + ++ A AGI +V A+GN G S +
Sbjct: 144 DPDDDAAEVISMSL-------GGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPA 196
Query: 388 FSPWIFTVGA 397
P + VGA
Sbjct: 197 AYPEVIAVGA 206
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 31/141 (21%)
Query: 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM 627
+S I +S R P+ + APG I + + +S+
Sbjct: 207 IDSNDNIASFSNRQPE---------------VSAPGVDILSTYP----------DDSYET 241
Query: 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDEN 687
+ GT+MA PH++G+ ALI+ + + + G I+ A
Sbjct: 242 LMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRG--ILHITADDLGPTG 299
Query: 688 QSPATPFDMGSGFVNATASLD 708
G G V A ++
Sbjct: 300 WDADY----GYGVVRAALAVQ 316
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 54/299 (18%), Positives = 96/299 (32%), Gaps = 58/299 (19%)
Query: 164 HTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGI 223
+ + W G+ VV+ +DTGI H + G
Sbjct: 14 FDRYGVKADK-VW----DMGFTGQNVVVAVVDTGIL-HHRDLNANV----------LPGY 57
Query: 224 CEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASV--AAGN 281
++ S + + D HGSH A A N
Sbjct: 58 DFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTN 117
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA----------Q 331
+ I V G+A + + +AL + GG+ +D+ + AA +
Sbjct: 118 NRIGVA----------GVAYGAKVVPVRALGRC-GGYDSDISDGLYWAAGGRIAGIPENR 166
Query: 332 DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGP--SPKSMSSFS 389
+ +I++S+ + A + G VV AAGN S +S
Sbjct: 167 NPAKVINMSLG------SDGQCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSC- 219
Query: 390 PWIFTVGAASHDRI---YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
+ +VGA + I ++N G + ++ APG D + T+ S ++ +
Sbjct: 220 NNVLSVGATTSRGIRASFSNY---GVDVDLA----APGQDILSTVDSGTRRPVSDAYSF 271
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 27/114 (23%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF----PSFSP 654
L APG I S++ + + ++++ M+GTSMA PH++G+AAL+ + +P
Sbjct: 246 LAAPGQDIL---STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
+ + L ++ + + +GSG V+A A+++
Sbjct: 303 AELKDVLVSTTS--------------------PFNGRLDRALGSGIVDAEAAVN 336
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 5e-18
Identities = 44/231 (19%), Positives = 73/231 (31%), Gaps = 56/231 (24%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G ++ DTG+D + F G K+
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSM---------HEAFRG---------------KITA---- 52
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+ + D +GHG+H A GN GMAP++++
Sbjct: 53 ---------LYALGRTNNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANL 92
Query: 306 AVYKALYK--SFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLS 363
+ GG +++ QA G I + S T +D
Sbjct: 93 VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSW-GAAVNGAYTTDSRNVDDY--- 148
Query: 364 AAKAGIFVVQAAGNTGPSPKSMSSF--SPWIFTVGAASHDRIYTNSIILGN 412
K + ++ AAGN GP+ ++S+ + TVGA + R S
Sbjct: 149 VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNI 199
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 8e-17
Identities = 60/278 (21%), Positives = 103/278 (37%), Gaps = 43/278 (15%)
Query: 548 KKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIW 607
K I GA + +++++ + +S+RGP + +KP+++APG I
Sbjct: 177 KNAITVGATENLRPSF-GSYADNINHVAQFSSRGPTKDG-------RIKPDVMAPGTFIL 228
Query: 608 AAWSSLGTDSVEF--QGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSA 665
+A SSL DS + +A M GTSMA P +AG A +++ F +L +A
Sbjct: 229 SARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAA 288
Query: 666 TLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFD---ASYNDYMS 722
+ A + + G G V SL+ V + S + +
Sbjct: 289 LI--------------AGAADIGLGYPNGNQGWGRVTLDKSLNVAYVNESSSLSTSQKAT 334
Query: 723 FLCGINGSSP--VVLNYTGQNCWAYNSTISGADLNL----PSITIARLNQSRTVQRTLTN 776
+ P + L ++ S DL+L P+ T N + +
Sbjct: 335 YSFTATAGKPLKISLVWSDAPASTTASVTLVNDLDLVITAPNGTQYVGNDFTSPYNDNWD 394
Query: 777 IAGNETYSVGWSAP---------YGVSMKVSPTHFSIA 805
N +V +AP ++ V P FS+A
Sbjct: 395 GRNN-VENVFINAPQSGTYTIEVQAYNVPVGPQTFSLA 431
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 87.1 bits (215), Expect = 8e-18
Identities = 46/297 (15%), Positives = 83/297 (27%), Gaps = 80/297 (26%)
Query: 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTR 228
+G+ Q W + +G +++ +DTG+D THP
Sbjct: 141 IGVTQQLWEE-----ASGTNIIVAVVDTGVDGTHPDLEG--------------------- 174
Query: 229 DFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTAS-VAAGNHGIPVV 287
++I G G+H A +AA G +V
Sbjct: 175 ---------QVIAGYRP-------AFDEELPAGTDSSYGGSAGTHVAGTIAAKKDGKGIV 218
Query: 288 VTGHHFGNASGMAPRSHIAVYKALYKSFG------GFAADVVAAIDQAAQDGVDIISLSI 341
G+AP + I V A I A G +++ S
Sbjct: 219 ----------GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSW 268
Query: 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS-SFSPWIFTVGAASH 400
G + + A A + G+ +V +AGN + P + V A +
Sbjct: 269 -------GGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDY 321
Query: 401 DRI------YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVG 451
+++ + +++ APG + T+ G
Sbjct: 322 YGGTFRVAGFSSR---SDGVSVG----APGVTILSTVPGEDSIGYEGHNENVPATNG 371
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 1e-14
Identities = 51/319 (15%), Positives = 94/319 (29%), Gaps = 41/319 (12%)
Query: 566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAW--------SSLGTDS 617
++ ++ +S+R + APG +I + +
Sbjct: 320 DYYGGTFRVAGFSSRSDGVS-------------VGAPGVTILSTVPGEDSIGYEGHNENV 366
Query: 618 VEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNG----- 672
G ++ GTSMAAPH+ G+ A++ QKFP+ P I L +A ++ NG
Sbjct: 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHDT 426
Query: 673 --GPIMAQRAYAKPDENQSPATPF---------DMGSGFVNATASLDPGLVFDASYNDYM 721
G + A P Q F + G V + D G + A
Sbjct: 427 GYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDG 486
Query: 722 SFLCGINGSSPVVLNYTGQNCWAYNSTISGAD----LNLPSITIARLNQSRTVQRTLTNI 777
S + G + W + ++ +A Q+ V ++
Sbjct: 487 IARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPD 546
Query: 778 AGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQG 837
A + + S +S +L + ++ L G
Sbjct: 547 ATQLNVNFNSTLQVKFSTNLSTLKDPQFVVVDPLLRGVYGRVAYARNQTYDLSLLSGQIS 606
Query: 838 HIVNIPLSVVARLSYNATT 856
+ L ++ T
Sbjct: 607 FGIQTLLPAATDITIQGTV 625
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 57/271 (21%), Positives = 88/271 (32%), Gaps = 85/271 (31%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+ G GV IDTG+ TH F AS
Sbjct: 26 TDYDGSGVTAFVIDTGVLNTHNEFGGRAS------------------------------- 54
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
++ + D +GHG+H A G+ G+A
Sbjct: 55 -----------SGYDFIDNDYDATDCNGHGTHVAGTIGGST--------------YGVAK 89
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV--DIISLSITPNRRPPGIATFFNPIDM 359
++ + L S G + V+A I+ + + ++S+ D
Sbjct: 90 NVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLG--------GGASQATDD 141
Query: 360 ALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSIILGNS 413
A+ +A AGI V AAGN SP + TVG+ S+D + S G
Sbjct: 142 AVNAAVAAGITFVVAAGNDNSNACNYSPAR----AADAITVGSTTSNDSRSSFSNY-GTC 196
Query: 414 LTISGVGLAPGTDKMYTLISALHALNNNTTT 444
L I APG+ + S+ + N+ T T
Sbjct: 197 LDI----YAPGSS----ITSSWYTSNSATNT 219
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 8/69 (11%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
++ APG+SI ++W + + + +SGTSMA+PH+AG+AAL + P+ SP+ +
Sbjct: 198 DIYAPGSSITSSWYTSNSAT--------NTISGTSMASPHVAGVAALYLDENPNLSPAQV 249
Query: 658 ASALSTSAT 666
+ L T AT
Sbjct: 250 TNLLKTRAT 258
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 39/284 (13%), Positives = 69/284 (24%), Gaps = 84/284 (29%)
Query: 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTR 228
+GL + VV+ +D+G+ + F+
Sbjct: 30 IGLTETTMSLTDK----NTPVVVSVVDSGVAFIGGLSDSE-----------FAKFSFTQ- 73
Query: 229 DFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVV 288
S HG+ AS+ A +GI
Sbjct: 74 --------------------------DGSPFPVKKSEALYIHGTAMASLIASRYGI---- 103
Query: 289 TGHHFGNASGMAPRSHIAVYKALYKSFGG---FAADVVAAIDQAAQDGVDIISLSITPNR 345
G+ P + I+ + + A + + + A II++S
Sbjct: 104 --------YGVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKG 155
Query: 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG-----------------PSPKSMSSF 388
+V A GN G S++
Sbjct: 156 VASASVWTEL----LSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKK 211
Query: 389 SPWIFTVGAASHDRIYTNSIILGNSLTISGVGL------APGTD 426
+ V A + R ++ G +T S G APG +
Sbjct: 212 QDPVIRVAALAQYRKGETPVLHGGGITGSRFGNNWVDIAAPGQN 255
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 9e-14
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIA 658
+ APG +I SGTS A ++G+ A + P + + +
Sbjct: 249 IAAPGQNITFLRP----------DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELK 298
Query: 659 SALSTSATLYDKNGG 673
L SA Y
Sbjct: 299 RTLLESADKYPSLVD 313
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 49/253 (19%), Positives = 83/253 (32%), Gaps = 81/253 (32%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
G GV IDTG++ H F +
Sbjct: 24 ANFDGFGVTAYVIDTGVNNNHEEFGGRSV------------------------------- 52
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
++ + A D +GHG+H A G+ G+A
Sbjct: 53 -----------SGYDFVDNDADSSDCNGHGTHVAGTIGGSQ--------------YGVAK 87
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV--DIISLSITPNRRPPGIATFFNPIDM 359
+I + L S G + V++ +D AQ+ + ++S+ +D
Sbjct: 88 NVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLG--------GGQSTALDS 139
Query: 360 ALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSIILGNS 413
A+ A ++G+ + AAGN+ SP P TVG+ S D + S G+
Sbjct: 140 AVQGAIQSGVSFMLAAGNSNADACNTSPAR----VPSGVTVGSTTSSDSRSSFSNW-GSC 194
Query: 414 LTISGVGLAPGTD 426
+ + APG+
Sbjct: 195 VDL----FAPGSQ 203
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
+L APG+ I +AW G + +SGTSMA PH+AG+AAL Q+ +P +
Sbjct: 196 DLFAPGSQIKSAWYDGGYKT----------ISGTSMATPHVAGVAALYLQENNGLTPLQL 245
Query: 658 ASALSTSAT 666
L++ A+
Sbjct: 246 TGLLNSRAS 254
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 6e-16
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 84/278 (30%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
G V + +DT I H
Sbjct: 21 PPDGGSLVEVYLLDTSIQSDHREI-----------------------------------E 45
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
R + ++ + D HG+H A V +G +G+A
Sbjct: 46 GRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAK 91
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDIISLSITPNRRPPGIATFFN 355
+ + + L G + + ++ + G ++ L + +
Sbjct: 92 GASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA--------GGYSR 143
Query: 356 PIDMALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSII 409
++ A A+AG+ +V AAGN SP S +P + TVGA + D+ T +
Sbjct: 144 VLNAACQRLARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGATNAQDQPVTLGTL 199
Query: 410 L---GNSLTISGVGLAPGTDKMYTLISALHALNNNTTT 444
G + + APG D +I A + +
Sbjct: 200 GTNFGRCVDL----FAPGED----IIGASSDCSTCFVS 229
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAI 657
+L APG I A S T F SGTS AA H+AG+AA++ P + + +
Sbjct: 208 DLFAPGEDIIGASSDCST--------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAEL 259
Query: 658 ASALSTSAT 666
L +
Sbjct: 260 RQRLIHFSA 268
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 56/271 (20%), Positives = 86/271 (31%), Gaps = 87/271 (32%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
Y G GV + IDTGI TH F A G D G+
Sbjct: 26 YTATGRGVNVYVIDTGIRTTHREFGGRAR----------VGY-----DALGGN------- 63
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
D +GHG+H A G G+A
Sbjct: 64 ----------------------GQDCNGHGTHVAGTIGGVT--------------YGVAK 87
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD--IISLSITPNRRPPGIATFFNPIDM 359
++ + L + G + V+A +D ++ + ++S+ +D
Sbjct: 88 AVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLG--------GGVSTALDN 139
Query: 360 ALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSIILGNS 413
A+ ++ AG+ AAGN SP TVGA S D + S G+
Sbjct: 140 AVKNSIAAGVVYAVAAGNDNANACNYSPAR----VAEALTVGATTSSDARASFSNY-GSC 194
Query: 414 LTISGVGLAPGTDKMYTLISALHALNNNTTT 444
+ + APG + SA + + T T
Sbjct: 195 VDL----FAPGAS----IPSAWYTSDTATQT 217
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APG SI +AW + T + ++GTSMA PH+AG+AAL ++ PS +P+++ASA
Sbjct: 199 APGASIPSAWYTSDTAT--------QTLNGTSMATPHVAGVAALYLEQNPSATPASVASA 250
Query: 661 LSTSAT 666
+ AT
Sbjct: 251 ILNGAT 256
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 59/258 (22%), Positives = 83/258 (32%), Gaps = 89/258 (34%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
+AG G + IDTG++ THP F A + S
Sbjct: 27 DTSAGAGACVYVIDTGVEDTHPDFEGRAK----------QIK-----SYAST-------- 63
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
DG GHG+H A G+A
Sbjct: 64 ----------------------ARDGHGHGTHCAGTIGSKT--------------WGVAK 87
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD-------IISLSITPNRRPPGIATFF 354
+ I K L S G ++++A +D A D + S+S+ +
Sbjct: 88 KVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLG--------GGYS 139
Query: 355 NPIDMALLSAAKAGIFVVQAAGNTGP-----SPKSMSSFSPWIFTVGA-ASHDRIYTNSI 408
++ A +G+FV AAGN SP S P + TVGA S+D T S
Sbjct: 140 AALNQAAARLQSSGVFVAVAAGNDNRDAANTSPAS----EPTVCTVGATDSNDVRSTFSN 195
Query: 409 ILGNSLTISGVGLAPGTD 426
G + I APGT
Sbjct: 196 Y-GRVVDI----FAPGTS 208
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
APG SI + W T++ +SGTSMA PHIAGLAA + S A+
Sbjct: 204 APGTSITSTWIGGRTNT----------ISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGR 252
Query: 661 LSTSAT 666
+ T +T
Sbjct: 253 IQTLST 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 9e-14
Identities = 56/254 (22%), Positives = 89/254 (35%), Gaps = 81/254 (31%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
E+AG+G + IDTGI+ +HP F A + S
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEFEGRAQ----------MVK-----TYYYSS------- 63
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
DG+GHG+H A G+A
Sbjct: 64 -----------------------RDGNGHGTHCAGTVGSRT--------------YGVAK 86
Query: 302 RSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD-------IISLSITPNRRPPGIATFF 354
++ + K L + G + ++A +D A D + + SLS+ +
Sbjct: 87 KTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLG--------GGYS 138
Query: 355 NPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS-SFSPWIFTVGA-ASHDRIYTNSIILGN 412
+ ++ A +G+ V AAGN ++ S + P + TVGA +DR + S G+
Sbjct: 139 SSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNY-GS 197
Query: 413 SLTISGVGLAPGTD 426
L I PGTD
Sbjct: 198 VLDI----FGPGTD 207
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660
PG I + W T S +SGTSMA PH+AGLAA + + + ++
Sbjct: 203 GPGTDILSTWIGGSTRS----------ISGTSMATPHVAGLAAYLMTLGKT-TAASACRY 251
Query: 661 LSTSAT 666
++ +A
Sbjct: 252 IADTAN 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 92/647 (14%), Positives = 183/647 (28%), Gaps = 198/647 (30%)
Query: 36 EPDDEITAVYIVTL---KQAPSVHRFAQELRRGNKNHGF------HKQNGTSGRLSRLNN 86
D + + KQ V +F +E+ R N+ F +Q S
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 87 PRNV--SISHPRSGYNISRVHDSI-LRRAF---KGEKYLKLYSYHYLINGF--SVFVTPQ 138
R+ + + + YN+SR+ + LR+A + K + + + G +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----VLGSGKTW----- 165
Query: 139 QAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQGA-WIQEGGYETAGEGVVIGFIDT- 196
+ +V + V+ + W+ + V+ +
Sbjct: 166 ----V-----ALDVCLSYKVQCK---------MDFKIFWLNLKNCNSPET--VLEMLQKL 205
Query: 197 --GIDPTHPSFADDASEHSYPVPSHFSGICEVTRD-FPSGSCNRKLIGARHFAASAITRG 253
IDP S +D HS + I R S L+ +
Sbjct: 206 LYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLL---------VLLN 252
Query: 254 IFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP--RSHIAVYKAL 311
+ N+ + F+ +++T ++ +HI +L
Sbjct: 253 VQNAK--AWNAFN---------------LSCKILLTTRFKQVTDFLSAATTTHI----SL 291
Query: 312 YKSFGGFAADVVAAIDQAAQDGVDIIS--LSITPNRRPPGIATFFNPIDMALLSAAKAGI 369
D + ++ L P P + T NP +++++ +
Sbjct: 292 DHHSMTLTPD----------EVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESI--- 337
Query: 370 FVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK-M 428
++++ W H + I+ +SL + L P + M
Sbjct: 338 ------------RDGLATWDNW-------KHVNCDKLTTIIESSLNV----LEPAEYRKM 374
Query: 429 Y---------TLISA--LHALNNNTTTTDDM-YVGECQDSSNFNQDLVQGNLLICSYSIR 476
+ I L + + +D M V + S + + + I SI
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIY 432
Query: 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKIL--L 534
L K E L + + Y P F + +IP D +
Sbjct: 433 LEL-----KVKLENEYALHRSIVDHYNIP--KTFDSDD--------LIPPYLDQYFYSHI 477
Query: 535 QYYNSSLERDE--------------VTKKIIKFGAVACILGGL----------KANFSNS 570
++ ++E E + +KI G + K ++
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 571 APKIMYYSARGPDPEDSFL----------DDADIMKPNLVAPGNSIW 607
PK Y D FL D+++ L+A +I+
Sbjct: 538 DPK---YERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-04
Identities = 61/447 (13%), Positives = 131/447 (29%), Gaps = 115/447 (25%)
Query: 16 VVL--LLGF----LVCTSFCRAQD-DSEPDDEITAVYIVTLKQAPSV-----------HR 57
V++ +LG + C + + D +I + + LK S ++
Sbjct: 153 VLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 58 FAQELRRGNKN--HGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNISR-VHDSILRRAFK 114
+ + + + + L RL + + + V ++ AF
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENC-LLVLLNVQNAKAWNAFN 263
Query: 115 GE-KYL-------------KLYSYHYLINGFSVFVTPQQAEKLSRRREVANV-VSDFSVR 159
K L + H ++ S+ +TP + + L + + D R
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLP-R 320
Query: 160 TATTHTPQFLGLPQGAWIQEG-----GYETAGEGVVIGFIDTGIDPTHPS---------- 204
T P+ L + I++G ++ + I++ ++ P+
Sbjct: 321 EVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 205 -FADDASEHSYPVPSH------FSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNS 257
F A +P+ F I + L+ + S I+ I +
Sbjct: 380 VFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTIS--IPSI 431
Query: 258 SQDYASPFDGDGHGSHTASVAA--------GNHGIPVVV-------TGHHFGNASGMAPR 302
+ + + H + V + IP + GHH N R
Sbjct: 432 YLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPER 489
Query: 303 SHIAVYKALYKSFG---------GFAADVVAAIDQAAQDGVDIISLSITPN-----RRPP 348
+ +++ ++ F A + +I Q + I N R
Sbjct: 490 --MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVN 546
Query: 349 GIATFFNPIDMALLSAAKAGIFVVQAA 375
I F I+ L+ + + ++ A
Sbjct: 547 AILDFLPKIEENLICSKYTDL--LRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 61/421 (14%), Positives = 105/421 (24%), Gaps = 152/421 (36%)
Query: 488 FETAK-NLSAAGIVF-YMDPFVIGFQLNPTPMKMPGI--------IIPSPDDSK------ 531
FET + I+ + D FV F I II S D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 532 -ILLQYYNSSLER--DEVTKKIIKFGAVACILGGLKANFSN-SAPKIMYYSARGPDPEDS 587
LL +++ +EV + KF ++ +K S MY R D
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKF-----LMSPIKTEQRQPSMMTRMYIEQR-----DR 118
Query: 588 FLDDADIMKPNLVA---PGNSIWAAWSSLGTDS-VEFQGESFAMMSG---TSMAAPHIAG 640
+D + V+ P + A L V G + G T +A
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-----VLGSGKTWVALD--VC 171
Query: 641 LAALIKQKFP------SF----SPSAIASALSTSATLYDKNGGP---------------- 674
L+ ++ K + SP + L D N
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 675 -----IMAQRAYAKP----DENQSPAT--PFDMG------SGFVNATASLDPGLVFDASY 717
++ + Y Q+ F++ + F T L S
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 718 NDY---------MSFL---------------CGINGSSPVVL---------------NYT 738
+ + S L N P L N+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWK 348
Query: 739 GQNCWAYNSTISGA---------------------DLNLPSITIARL--NQSRTVQRTLT 775
NC + I + ++P+I ++ + + ++ +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 776 N 776
N
Sbjct: 409 N 409
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 3e-11
Identities = 44/265 (16%), Positives = 72/265 (27%), Gaps = 67/265 (25%)
Query: 174 GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSG 233
W G GVV +D G+D + D G
Sbjct: 45 DLWYNN----ITGAGVVAAIVDDGLDYENEDLKD--------------------NFCAEG 80
Query: 234 SCNRKLIGARHFAASAITRGIFNSSQDYASP-FDGDGHGSHTASV--AAGNHGIPVVVTG 290
S + FN + + P D HG+ A A + V
Sbjct: 81 SWD------------------FNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGV--- 119
Query: 291 HHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS-----ITPNR 345
G+ + I+ + L S D A++ D DI S S +
Sbjct: 120 -------GVGYNAKISGIRIL--SGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHL 169
Query: 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS----SFSPWIFTVGAASHD 401
+ P + G V A+GN G + + + S + T+GA H
Sbjct: 170 QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK 229
Query: 402 RIYTNSIILGNSLTISGVGLAPGTD 426
++ +++ G
Sbjct: 230 DLHPPYSEGCSAVMAVTYSSGSGEY 254
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 605 SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664
+++ S S + G GTS AAP AG+ L+ + P+ + + S
Sbjct: 245 VTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILS 304
Query: 665 ATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVF 713
A +KN A K ++ G G ++A ++ +
Sbjct: 305 AVGLEKNADGDWRDSAMGKKYSHR-------YGFGKIDAHKLIEMSKTW 346
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 1e-08
Identities = 45/283 (15%), Positives = 72/283 (25%), Gaps = 66/283 (23%)
Query: 174 GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSG 233
AW Q G G+V+ +D GI+ HP A P
Sbjct: 29 EAWAQGFT----GHGIVVSILDDGIEKNHPDLAG--------------------NYDPGA 64
Query: 234 SCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASV--AAGNHGIPVVVTGH 291
S + Q + + + HG+ A A N+G+ V
Sbjct: 65 SFD--------------VNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGV---- 106
Query: 292 HFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNR-----R 346
G+A + I + L G V A + + I S S P
Sbjct: 107 ------GVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVD 157
Query: 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG----PSPKSMSSFSPWIFTVGAASHDR 402
P G V A+GN G + S + ++ +A+
Sbjct: 158 GPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFG 217
Query: 403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTT 445
+S + + L T +
Sbjct: 218 NVPWYSEACSSTLAT----TYSSGNQNEKQIVTTDLRQKCTES 256
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 7e-06
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 12/142 (8%)
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLV-APGNSIWAAWSSLGTDSVEFQGE 623
N I S + ++ L + + TD + +
Sbjct: 196 CNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDL---RQK 252
Query: 624 SFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAK 683
+GTS +AP AG+ AL + + + + + ++ N K
Sbjct: 253 CTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRK 312
Query: 684 PDENQSPATPFDMGSGFVNATA 705
G G ++A A
Sbjct: 313 VSH--------SYGYGLLDAGA 326
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.99 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.31 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.22 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.06 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 97.91 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.74 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 95.95 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.45 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 94.72 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 93.52 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 91.14 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 88.64 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.58 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 87.17 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 86.29 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 83.04 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 81.54 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 80.36 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-99 Score=889.53 Aligned_cols=620 Identities=33% Similarity=0.522 Sum_probs=526.9
Q ss_pred CCCCcccCCCc--ccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceee
Q 003005 163 THTPQFLGLPQ--GAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLI 240 (858)
Q Consensus 163 ~~~~~~~~~~~--~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~ 240 (858)
+++++++|++. .+|.. +.+|+||+|||||||||++||+|.+... .+++..|++.|+.+.+|....||+|++
T Consensus 2 t~s~~flgl~~~~~~w~~----~~~G~gViVaViDTGId~~Hp~f~d~g~---~p~p~~wkg~c~~g~~f~~~~cN~kii 74 (649)
T 3i6s_A 2 THTSDFLKLNPSSGLWPA----SGLGQDVIVAVLDSGIWPESASFQDDGM---PEIPKRWKGICKPGTQFNASMCNRKLI 74 (649)
T ss_dssp CSHHHHTTCCSSSSHHHH----HGGGTTCEEEEEESCBCTTSGGGCCTTC---CCCCTTCCCCBCCBTTBCTTSCCSSEE
T ss_pred CCChHHcCCCCchhhHhc----cCCCCCCEEEEEccCCCCCChhhccCCC---CCCccccccccccCcccccccccccee
Confidence 56677888863 47877 6899999999999999999999999765 678899999999999999999999999
Q ss_pred eeeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHH
Q 003005 241 GARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAA 320 (858)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~ 320 (858)
+.++|..+..... .+...+..++.|.+||||||||||||+..++.+..|...+.+.||||+|+|+++|+++. .++..+
T Consensus 75 g~~~f~~~~~~~~-~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~ 152 (649)
T 3i6s_A 75 GANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN-EGTFTS 152 (649)
T ss_dssp EEEECCHHHHHHC-TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEET-TEECHH
T ss_pred eeEeccCcccccc-cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCC-CCCCHH
Confidence 9999997754433 44445567788999999999999999987666666776677899999999999999987 458899
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeeccc
Q 003005 321 DVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400 (858)
Q Consensus 321 ~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~ 400 (858)
++++||+||+++|+||||||||.... ..+.+.+..+++.|.++|++||+||||+|+...++++.+||+|+|||++.
T Consensus 153 ~i~~Ai~~A~~~gvdVIn~SlG~~~~----~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~ 228 (649)
T 3i6s_A 153 DLIAAMDQAVADGVDMISISYGYRFI----PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228 (649)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSC----CGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCCccCCc----ccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeec
Confidence 99999999999999999999998632 44678999999999999999999999999998899999999999999999
Q ss_pred CceeeeEEEeCCceEEEeeecCCCC--CceeEEEEcccccCCCCcccCCCCccccCCCCCCccccc--cceEEEEEeccc
Q 003005 401 DRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLV--QGNLLICSYSIR 476 (858)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~--~Gkivl~~~~~~ 476 (858)
++.|+..+.+++++++.+.++.+.. ...+|+++.. ....|.. ..++...+ +|||++|.+
T Consensus 229 dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~-------------~~~~C~~-~~l~~~~vdl~GkIvlc~~--- 291 (649)
T 3i6s_A 229 DRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK-------------TLSDCSS-EELLSQVENPENTIVICDD--- 291 (649)
T ss_dssp SCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT-------------TTTTCCC-HHHHTTSSSGGGCEEEECC---
T ss_pred ccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc-------------ccccccc-ccccccccccCCcEEEEeC---
Confidence 9999999999999999999887765 5678888764 2456763 34555556 999999998
Q ss_pred cccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeee
Q 003005 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (858)
Q Consensus 477 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (858)
|.+.+.++..+++.+|+.|+|++|+. .......+.+|.+.+ +..++..|++|+++.... +
T Consensus 292 ---g~~~~~~k~~~~~~~Ga~g~i~~n~~----~~~~~~~~~~P~~~v-~~~~g~~i~~yi~s~~~~------------~ 351 (649)
T 3i6s_A 292 ---NGDFSDQMRIITRARLKAAIFISEDP----GVFRSATFPNPGVVV-NKKEGKQVINYVKNSVTP------------T 351 (649)
T ss_dssp ---CSCHHHHHHHHHHHTCSEEEEECCCG----GGGGCCCCCSCEEEE-CHHHHHHHHHHHHTCSSC------------E
T ss_pred ---CCccHHHHHHHHHhcCceEEEEecCc----cccccccCcCCEEEE-cHHHHHHHHHHHhcCCCc------------e
Confidence 67889999999999999999999986 233456788999888 588999999999886532 2
Q ss_pred EEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccc----cCccceeecccC
Q 003005 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEF----QGESFAMMSGTS 632 (858)
Q Consensus 557 ~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~----~~~~y~~~sGTS 632 (858)
+++....+.......+.++.||||||+.+ .++++||||+|||++|+++++......... ....|..|||||
T Consensus 352 a~i~~~~t~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTS 426 (649)
T 3i6s_A 352 ATITFQETYLDTKPAPVVAASSARGPSRS-----YLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTS 426 (649)
T ss_dssp EEEEEEEEECCCSSCCEECTTSCCSSCTT-----CTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHH
T ss_pred EEEeecceeeccCCCCcccccCCCCCCCC-----CCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccc
Confidence 33333333334456789999999999986 458999999999999999997653321111 225899999999
Q ss_pred chhHHHHHHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCee
Q 003005 633 MAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLV 712 (858)
Q Consensus 633 MAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~~v 712 (858)
||||||||++|||+|+||+|+|++||++||+||.+++..+.++.+.. ...++.++.||+|+||+.+|++|+||
T Consensus 427 MAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~-------~~~~a~~~~~GaG~vn~~~A~~pGLv 499 (649)
T 3i6s_A 427 MAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD-------NNKAATPLDMGAGHVDPNRALDPGLV 499 (649)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETT-------TSSBCCHHHHTTCBCCHHHHTCCSEE
T ss_pred cccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccccc-------cCCcCCcCCCCeeeeCHHHhcCcccc
Confidence 99999999999999999999999999999999999999998887642 35577889999999999999999999
Q ss_pred eeCCcchhhhhccccCCCcceeeeccCcc----cccCCCCCCCCCCCCCeEEEee-cCcc-----eEEEEEEEEcCC-Cc
Q 003005 713 FDASYNDYMSFLCGINGSSPVVLNYTGQN----CWAYNSTISGADLNLPSITIAR-LNQS-----RTVQRTLTNIAG-NE 781 (858)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~n~~si~~~~-~~~~-----~~~~~tv~n~~~-~~ 781 (858)
||.+.+||+.|||.++++...|+.+++.. |+. .+.+||||||++.. ..+. ++++|||||++. +.
T Consensus 500 yd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~-----~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~ 574 (649)
T 3i6s_A 500 YDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN-----PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAA 574 (649)
T ss_dssp CCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC-----CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CE
T ss_pred ccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC-----chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCc
Confidence 99999999999999999888888887754 863 46799999999987 5666 899999999998 89
Q ss_pred eEEEEeecCCcceEEEeecEEEEe-CCCEEEEEEEEEEecC-CCCeEEEEEEEEeC-CccEEEEeEEEEEE
Q 003005 782 TYSVGWSAPYGVSMKVSPTHFSIA-SGEKQVLNVFFNATTS-GTAASFGRIGLFGN-QGHIVNIPLSVVAR 849 (858)
Q Consensus 782 ty~~~~~~~~~~~v~~~p~~~tl~-~g~s~~~~v~~~~~~~-~~~~~~G~i~~~~~-~~~~l~iP~~~~~~ 849 (858)
+|++++..|.|++|+|+|++|++. .||+++|+|+|+.... .+.+.+|+|+|+++ +.|.|++|++++..
T Consensus 575 ~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 575 TYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 999999999999999999999996 7999999999998754 45688999999974 67999999998765
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-92 Score=839.05 Aligned_cols=612 Identities=32% Similarity=0.527 Sum_probs=484.1
Q ss_pred CCCCCcccCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeee
Q 003005 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241 (858)
Q Consensus 162 ~~~~~~~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g 241 (858)
++++++|+|+++..|.. ..+|+||+|||||||||++||+|.+... .+++..|++.|+.+.+| .||+|+++
T Consensus 1 tt~s~~flGl~~~~~~~----~~~G~gViVgViDTGId~~Hp~f~d~g~---~~~~~~w~g~~~~~~~~---~~n~k~ig 70 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRR----SQVESNIVVGVLDTGIWPESPSFDDEGF---SPPPPKWKGTCETSNNF---RCNRKIIG 70 (621)
T ss_dssp CCSHHHHTTCCTTCCCC----HHHHTTCEEEEEESCBCTTSGGGCCTTC---CCCCTTCCCCBCCSSSC---CCCSSEEE
T ss_pred CCCChhHcCCCcccccc----CCCCCCCEEEEEecCCCCCChhhcCCCC---CCcccccccccccCCCc---ccCcceee
Confidence 35778899998877776 5789999999999999999999998765 67888999999998877 59999999
Q ss_pred eeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHH
Q 003005 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAAD 321 (858)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~ 321 (858)
+++|..+.. ....+...|+|++||||||||||||+........|...+.+.||||+|+|++||+|++ .++..++
T Consensus 71 ~~~~~~~~~-----~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~d 144 (621)
T 3vta_A 71 ARSYHIGRP-----ISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN-DGCSDTD 144 (621)
T ss_dssp EEECCCSSS-----CCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEET-TEECHHH
T ss_pred eeecccCCc-----cCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecC-CCCCHHH
Confidence 999976521 1223456788999999999999999876665556666677899999999999999987 5688899
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccC
Q 003005 322 VVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401 (858)
Q Consensus 322 i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~ 401 (858)
+++||+||+++|+||||||||+..+. ....+.+..+++.|.++|+++|+||||+|+...++++.+||+++|++.+.+
T Consensus 145 i~~a~~~a~~~g~dVin~SlG~~~~~---~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d 221 (621)
T 3vta_A 145 ILAAYDDAIADGVDIISLSVGGANPR---HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 221 (621)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCCCGG---GGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCS
T ss_pred HHHHHHHHHHhCCCEEEecCCCCCCC---CcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecc
Confidence 99999999999999999999986543 345688999999999999999999999999999999999999999999999
Q ss_pred ceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCc
Q 003005 402 RIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGL 481 (858)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~ 481 (858)
+.+...+.++++..+.+..+.......++++...+....... ......|. ...+....++|||++|.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~v~gkivl~~~~------- 290 (621)
T 3vta_A 222 RKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFD---KSTSRFCT-DKSVNPNLLKGKIVVCEAS------- 290 (621)
T ss_dssp EEEEEEEEETTSCEEEEBCCCCSCCEEECEEETTTSCCTTCC---HHHHTTTC-TTCSCGGGTTTSEEECSSC-------
T ss_pred ccceeeEEeccCceeeeeecccCCCccccccccccccccccc---cccccccc-ccccccccccceEEEEecC-------
Confidence 999999999999999998887776777888776654322211 11233454 4667788899999999873
Q ss_pred chHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEec
Q 003005 482 STIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILG 561 (858)
Q Consensus 482 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 561 (858)
+..+.......|+.+++++++... ....+.+|...+ ...++..++.+........ ..+..
T Consensus 291 --~~~~~~~~~~~Ga~gvi~~~~~~~-----~~~~~~lP~~~v-~~~~g~~i~~~~~~~~~~~------------a~~~~ 350 (621)
T 3vta_A 291 --FGPHEFFKSLDGAAGVLMTSNTRD-----YADSYPLPSSVL-DPNDLLATLRYIYSIRSPG------------ATIFK 350 (621)
T ss_dssp --CCHHHHHHHHTTCSEEEEECSCCS-----SCCCCSSSEEEE-CHHHHHHHHHHHHHHSSCC------------EEECC
T ss_pred --CChhHHhhhhcceeEEEEEecCCC-----cccccccceEEE-CHHHHHHHHHHHhccCCcc------------eEEec
Confidence 234556777899999999987543 234567888877 6788889998887654322 11111
Q ss_pred ccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHH
Q 003005 562 GLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGL 641 (858)
Q Consensus 562 ~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 641 (858)
.........+.++.||||||+.. ..+++||||+|||++|+|+++..........+..|..|||||||||||||+
T Consensus 351 -~~~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGv 424 (621)
T 3vta_A 351 -STTILNASAPVVVSFSSRGPNRA-----TKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGI 424 (621)
T ss_dssp -CEEEECTTCCCBCTTSCCCSCTT-----CTTSCSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHH
T ss_pred -ceEeccCCCCceeeecCCCCCCC-----CCCeeccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhH
Confidence 11123345678999999999874 247999999999999999998655433333456899999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeCCcchhh
Q 003005 642 AALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYM 721 (858)
Q Consensus 642 aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~~v~~~~~~~~~ 721 (858)
+|||||+||+|+|++||++||+||++++..+. ++.++.||+|+||+.+|++|+||||.+..||+
T Consensus 425 aALl~q~~P~~spa~IksaLmtTA~~~~~~~~----------------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~ 488 (621)
T 3vta_A 425 ATYVKTYNPTWSPAAIKSALMTTASPMNARFN----------------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYV 488 (621)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTC----------------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHhcCCcccccCC----------------CCCchhcCCCccCHHHhcCCCeEeecccchhh
Confidence 99999999999999999999999998765443 45678999999999999999999999999999
Q ss_pred hhccccCCCcceeeeccC--cccccCCCCCCCCCCCCCeEEEe---ecCcceEEEEEEEEcCC-CceEEEEeecCCcceE
Q 003005 722 SFLCGINGSSPVVLNYTG--QNCWAYNSTISGADLNLPSITIA---RLNQSRTVQRTLTNIAG-NETYSVGWSAPYGVSM 795 (858)
Q Consensus 722 ~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~n~~si~~~---~~~~~~~~~~tv~n~~~-~~ty~~~~~~~~~~~v 795 (858)
.|+|.++++...|+..++ ..|+.. ......+||+|||++. +...+++++|||+|++. ..||++++++|.|++|
T Consensus 489 ~~lc~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v 567 (621)
T 3vta_A 489 KFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTI 567 (621)
T ss_dssp ------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEE
T ss_pred hhhcccCCCchhheeeeccccccCCC-CcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEE
Confidence 999999998888877766 345431 2334678999999985 44457889999999999 9999999999999999
Q ss_pred EEeecEEEEe-CCCEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEEeEEEEE
Q 003005 796 KVSPTHFSIA-SGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVA 848 (858)
Q Consensus 796 ~~~p~~~tl~-~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~iP~~~~~ 848 (858)
+|+|.+|+++ .||+++|+|+|+.. ..+.+.+|+|+|+ ++.|.|++|+++.+
T Consensus 568 ~V~P~~l~f~~~~~~~~~~vt~~~~-~~~~~~~g~l~w~-d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 568 SVNPNVLSFNGLGDRKSFTLTVRGS-IKGFVVSASLVWS-DGVHYVRSPITITS 619 (621)
T ss_dssp EEESSEEEECSTTCEEEEEEEEEEC-CCSSEEEEEEEEE-CSSCCCEEEEEEEC
T ss_pred EEecCEEEEcCCCcEEEEEEEEEec-CCCceEEEEEEEE-cCCEEEEeCEEEEE
Confidence 9999999995 58999999999854 4577899999997 57899999999864
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-75 Score=717.88 Aligned_cols=544 Identities=19% Similarity=0.236 Sum_probs=404.7
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCcccccc----------CCCCCCCCCc
Q 003005 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVT----------RDFPSGSCNR 237 (858)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~n~ 237 (858)
+++++. +|.. +++|+||+|||||||||++||+|.+.. .|++.|..+ ......+||+
T Consensus 3 ~i~~~~-~w~~----~~~G~GV~VaVIDTGId~~Hp~f~~~~---------~~~~~~~~~~~~~~~~~~~g~~~g~~~n~ 68 (926)
T 1xf1_A 3 PSQVKT-LQEK----AGKGAGTVVAVIDAGFDKNHEAWRLTD---------KTKARYQSKEDLEKAKKEHGITYGEWVND 68 (926)
T ss_dssp TTCCHH-HHHH----HCSCTTCEEEEEESCCTTCCCCCSCCS---------CCCSSCCHHHHHHHHHHTTTCCCCBCCSS
T ss_pred ccccHH-HHhc----cCCCCCcEEEEEecCCCCCCHhHcCCC---------CCcccccchhhhcccccccCcccccccCc
Confidence 456655 8876 689999999999999999999999643 344444321 1123458999
Q ss_pred eeeeeeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC-
Q 003005 238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG- 316 (858)
Q Consensus 238 kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~- 316 (858)
|++++++|.++ ... .|..||||||||||||+...... ..+.+.||||+|+|+++|+++....
T Consensus 69 Kii~~~~~~~~------------~~~-~D~~gHGThVAgiiAg~~~~~~~----~~~~~~GvAP~A~l~~~kv~~~~g~~ 131 (926)
T 1xf1_A 69 KVAYYHDYSKD------------GKT-AVDQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNGLA 131 (926)
T ss_dssp SCCEEEESCCC------------SCC-CCSSTTTTHHHHSSCCCCCCCCS----CSCCTTTTCTTSEEEEEECCCCSCHH
T ss_pred ccceeeccccC------------CCC-CCCCCcHHHHHHHHhCCCccCcc----cCCceEEECCCCEEEEEEeecCCCCC
Confidence 99999998753 122 28899999999999998633211 1245789999999999999987332
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC--------------
Q 003005 317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-------------- 382 (858)
Q Consensus 317 ~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------- 382 (858)
+..+++++||+||+++|++|||||||+..... ..+.+.+..+++.|.++|++||+||||+|...
T Consensus 132 ~~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~--~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~ 209 (926)
T 1xf1_A 132 DYARNYAQAIRDAINLGAKVINMSFGNAALAY--ANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYG 209 (926)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCSSCCCTT--CCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCB
T ss_pred CcHHHHHHHHHHHHHhCCcEEEECCCCCCCCc--cccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcc
Confidence 34578999999999999999999999864321 23456788999999999999999999999631
Q ss_pred -CCCCCCCCceEEEeecccCceeeeEEEe-CCceEEEee---ecCCCC-CceeEEEEcccccCCCCcccCCCCccccCCC
Q 003005 383 -KSMSSFSPWIFTVGAASHDRIYTNSIIL-GNSLTISGV---GLAPGT-DKMYTLISALHALNNNTTTTDDMYVGECQDS 456 (858)
Q Consensus 383 -~~~~~~~p~vitVgA~~~~~~~~~~~~~-~~g~~~~~~---~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 456 (858)
...|+.+||+|+|||++.++.+...+.+ +++...... ...+.. ...|++++... .|. .
T Consensus 210 tv~~PA~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~---------------g~~-~ 273 (926)
T 1xf1_A 210 VVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR---------------GTK-E 273 (926)
T ss_dssp CCCSCTTTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT---------------SCS-T
T ss_pred eecCcccCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC---------------CCC-c
Confidence 2345668999999999999998888776 444322222 112222 56788887543 354 2
Q ss_pred CCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHH
Q 003005 457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQY 536 (858)
Q Consensus 457 ~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~ 536 (858)
..+ .+++|||++|.| |.|.+.++..++..+||.|+|++|+..............+|...+ +..++..|..
T Consensus 274 ~~~--~~v~Gkivl~~r------g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i-~~~~g~~l~~- 343 (926)
T 1xf1_A 274 DDF--KDVKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFI-SRKDGLLLKD- 343 (926)
T ss_dssp TTT--TTCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEE-CHHHHHHHHH-
T ss_pred cch--hhcCCeEEEEEC------CCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEE-eHHHHHHHHh-
Confidence 233 589999999998 678899999999999999999998765432222345677898877 6677777763
Q ss_pred HhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCC
Q 003005 537 YNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD 616 (858)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~ 616 (858)
.+ ...+++.... ........+.++.||||||+.+ +++||||+|||++|+|++
T Consensus 344 ---~~------~~ti~~~~~~------~~~~~~~~~~~a~FSSrGp~~~-------~~lKPDI~APG~~I~sa~------ 395 (926)
T 1xf1_A 344 ---NP------QKTITFNATP------KVLPTASGTKLSRFSSWGLTAD-------GNIKPDIAAPGQDILSSV------ 395 (926)
T ss_dssp ---CS------SCEEEECSSC------EEEECSSCSBCCTTSCCCBCTT-------SCBSCCEEEECCCEEESS------
T ss_pred ---CC------ceEEEecccc------eecccCCcceeccccCCCCCCC-------CccCceEECCCCCEEeec------
Confidence 11 1123332221 1112344678999999999976 799999999999999998
Q ss_pred CccccCccceeecccCchhHHHHHHHHHHHH----hCCCCCHHH----HHHHHHccccccccCCCccccccccCCCCCCC
Q 003005 617 SVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPSA----IASALSTSATLYDKNGGPIMAQRAYAKPDENQ 688 (858)
Q Consensus 617 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~lsp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 688 (858)
+++.|..|||||||||||||++|||+| +||+|+|+| ||++||+||+++...+. .
T Consensus 396 ----~~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~--------------~ 457 (926)
T 1xf1_A 396 ----ANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDE--------------K 457 (926)
T ss_dssp ----SCSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGG--------------T
T ss_pred ----cCCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCCC--------------C
Confidence 456899999999999999999999964 699999997 99999999998754321 1
Q ss_pred CCCCCCccccccccccccCCCCeeeeCCcchhhhhccccCCCcceeeeccCcccccCCCCCCCCCCCCCeEEEeecCcce
Q 003005 689 SPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSITIARLNQSR 768 (858)
Q Consensus 689 ~~~~~~~~G~G~vd~~~A~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~n~~si~~~~~~~~~ 768 (858)
..+++++||+|+||+.+|+++.+. +|..++. ..+|.+.++..+.
T Consensus 458 ~~~~~~~~G~G~vn~~~A~~~~~~-----------l~~~~~~-------------------------~~~i~l~~~~~~~ 501 (926)
T 1xf1_A 458 AYFSPRQQGAGAVDAKKASAATMY-----------VTDKDNT-------------------------SSKVHLNNVSDKF 501 (926)
T ss_dssp EECCHHHHTTCBCCHHHHHHCSEE-----------EEESSSS-------------------------CSCEEEEEECSEE
T ss_pred ccCChhccCCCccCHHHhcCCCeE-----------EEcCCCC-------------------------cceeeccccCccE
Confidence 235678999999999999998653 3433321 1245566666677
Q ss_pred EEEEEEEEcCC-C--ceEEEEeec--CCcceEEEe--------ecEEEEeCCCEEEEEEEEEEec---------CCCCeE
Q 003005 769 TVQRTLTNIAG-N--ETYSVGWSA--PYGVSMKVS--------PTHFSIASGEKQVLNVFFNATT---------SGTAAS 826 (858)
Q Consensus 769 ~~~~tv~n~~~-~--~ty~~~~~~--~~~~~v~~~--------p~~~tl~~g~s~~~~v~~~~~~---------~~~~~~ 826 (858)
+++|||+|+++ . .+|++++.. +.+..+++. +.+|||+|||+++|+|+|+++. ..+.++
T Consensus 502 ~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~ 581 (926)
T 1xf1_A 502 EVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFL 581 (926)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEE
T ss_pred EEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEE
Confidence 88999999997 4 456666543 445566554 4579999999999999999862 134689
Q ss_pred EEEEEEEeCCc--cEEEEeEEEEEEeec
Q 003005 827 FGRIGLFGNQG--HIVNIPLSVVARLSY 852 (858)
Q Consensus 827 ~G~i~~~~~~~--~~l~iP~~~~~~~~~ 852 (858)
+|+|+|+++++ +.|++||+++.++-.
T Consensus 582 ~G~i~~~~~~~~~~~v~~P~~~~~g~~~ 609 (926)
T 1xf1_A 582 EGFVRFKQDPTKEELMSIPYIGFRGDFG 609 (926)
T ss_dssp EEEEEEESSTTSCCCEEEEEEEEESCGG
T ss_pred EEEEEEEeCCCCCCEEEeeeEEEecCcc
Confidence 99999996433 459999999998654
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-58 Score=530.38 Aligned_cols=339 Identities=32% Similarity=0.504 Sum_probs=271.8
Q ss_pred ceeEEEEEcceeeEEEEEcCHHHHHHH-----------hcCCCeeEEEeCccccccCCC-----CCcccCCCcccccccC
Q 003005 117 KYLKLYSYHYLINGFSVFVTPQQAEKL-----------SRRREVANVVSDFSVRTATTH-----TPQFLGLPQGAWIQEG 180 (858)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~~~l~~L-----------~~~p~V~~v~~~~~~~~~~~~-----~~~~~~~~~~~w~~~~ 180 (858)
+.+++++|. .++||+++++.+++++| +++|+|++|+++..+++.... ....++++. +|..
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 134 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATN-MWNL-- 134 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSC-CBCC--
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHh-HHhc--
Confidence 467888996 79999999999999999 899999999999988764321 112233333 6665
Q ss_pred CCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCC
Q 003005 181 GYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQD 260 (858)
Q Consensus 181 ~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~ 260 (858)
+++|+||+|||||||||++||+|.++ +++.++|.++
T Consensus 135 --g~~G~gv~VaViDtGid~~Hpdl~~~------------------------------i~~~~d~~~~------------ 170 (539)
T 3afg_A 135 --GYDGSGITIGIIDTGIDASHPDLQGK------------------------------VIGWVDFVNG------------ 170 (539)
T ss_dssp --SCCCTTCEEEEEESBCCTTSGGGTTT------------------------------EEEEEETTTC------------
T ss_pred --CCCCCCcEEEEEecCCCCCChHHhCC------------------------------EeeeEECCCC------------
Confidence 78999999999999999999999863 4444555432
Q ss_pred CCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC----CCCE
Q 003005 261 YASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDI 336 (858)
Q Consensus 261 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~V 336 (858)
...+.|++||||||||||+|+.... .+.+.||||+|+|+++|+++..+.+..++++++|+||+++ |++|
T Consensus 171 ~~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~V 243 (539)
T 3afg_A 171 KTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKV 243 (539)
T ss_dssp CSSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEE
T ss_pred CCCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcE
Confidence 1346788999999999999874221 1346799999999999999875457889999999999975 8999
Q ss_pred EEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC--CCCCCCCCceEEEeecccCceeeeEEEeCCce
Q 003005 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (858)
Q Consensus 337 IN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 414 (858)
||||||..... ...+.+..+++.+.++|++||+||||+|... ...|+..+++|+|||++.+
T Consensus 244 in~SlG~~~~~----~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~------------- 306 (539)
T 3afg_A 244 INLSLGSSQSS----DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY------------- 306 (539)
T ss_dssp EEECCCCCSCC----CSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT-------------
T ss_pred EEeCCCCCCCC----ccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC-------------
Confidence 99999986432 2357889999999999999999999999854 3467888999999986421
Q ss_pred EEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhC
Q 003005 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (858)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~ 494 (858)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcc
Q 003005 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (858)
Q Consensus 495 Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 574 (858)
+.+
T Consensus 307 -----------------------------------------------------------------------------~~~ 309 (539)
T 3afg_A 307 -----------------------------------------------------------------------------DVI 309 (539)
T ss_dssp -----------------------------------------------------------------------------SCB
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 237
Q ss_pred ccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCH
Q 003005 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (858)
Q Consensus 575 a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp 654 (858)
+.||||||+.+ +++||||+|||++|+++++...... ......|..++|||||||||||++|||+|++|+|+|
T Consensus 310 a~fSs~Gp~~~-------~~~kpdi~APG~~I~s~~~~~~~~~-~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~ 381 (539)
T 3afg_A 310 TDFSSRGPTAD-------NRLKPEVVAPGNWIIAARASGTSMG-QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTP 381 (539)
T ss_dssp CSSSCCCCCTT-------CBCCCSEEEECSSEEEECCTTCCCS-EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred ccccCCCCCCC-------CCCcccEecCcCCEEeeccCCCCCC-CCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCH
Confidence 88999999986 7999999999999999986532110 011236999999999999999999999999999999
Q ss_pred HHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCC
Q 003005 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPG 710 (858)
Q Consensus 655 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~ 710 (858)
++||++|++||+++...+ .++..||+|+||+.+|++..
T Consensus 382 ~~vk~~L~~tA~~~~~~~------------------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 382 DKVKTALIETADIVKPDE------------------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHHHSBCSSGGG------------------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHHHhhCccCCCCC------------------CCccCccCCccCHHHHhhhc
Confidence 999999999999875322 23468999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=504.55 Aligned_cols=319 Identities=25% Similarity=0.378 Sum_probs=259.3
Q ss_pred ceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccccCCCC-----------Ccc-----cCCCcccccccC
Q 003005 117 KYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHT-----------PQF-----LGLPQGAWIQEG 180 (858)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~~~~~~-----------~~~-----~~~~~~~w~~~~ 180 (858)
+.+++++|. .+++++++++++++++|+++|+|++|++++.+++..... ... ++++. +|..
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~-~w~~-- 98 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPS-VWSI-- 98 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGG-GGGT--
T ss_pred CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHH-HHhh--
Confidence 568889997 599999999999999999999999999999887643211 111 23323 5665
Q ss_pred CCCCCCCC--cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCC
Q 003005 181 GYETAGEG--VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSS 258 (858)
Q Consensus 181 ~~~~~G~G--v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~ 258 (858)
+ +|+| |+|||||||||++||+|.++. ...++|..+.. .
T Consensus 99 --~-~G~g~~v~VaViDtGid~~Hp~l~~~~------------------------------~~~~~~~~~~~-----~-- 138 (395)
T 2z2z_A 99 --T-DGSVSVIQVAVLDTGVDYDHPDLAANI------------------------------AWCVSTLRGKV-----S-- 138 (395)
T ss_dssp --C-SSCCTTCEEEEEESCBCTTCTTTGGGE------------------------------EEEEECGGGCC-----B--
T ss_pred --c-CCCCCcEEEEEEcCCCCCCChhHhhcc------------------------------ccCccccCCcc-----c--
Confidence 4 9999 999999999999999999742 23334433210 0
Q ss_pred CCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC------
Q 003005 259 QDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD------ 332 (858)
Q Consensus 259 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~------ 332 (858)
.+...+.|.+||||||||||+|..+ + .++.||||+|+|+.+|+++..+.+..++++++|+||+++
T Consensus 139 ~~~~~~~d~~gHGT~vAgiia~~~n-~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~ 209 (395)
T 2z2z_A 139 TKLRDCADQNGHGTHVIGTIAALNN-D--------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVAD 209 (395)
T ss_dssp CCHHHHBCSSSHHHHHHHHHHCCCS-S--------SSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHeecC-C--------CceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCcccccc
Confidence 0001235789999999999998732 1 235799999999999999875557889999999999998
Q ss_pred --------------CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeec
Q 003005 333 --------------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398 (858)
Q Consensus 333 --------------g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~ 398 (858)
+++|||||||.... ...+..+++.+.++|++||+||||+|.....+|+..+++|+|||+
T Consensus 210 ~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~ 282 (395)
T 2z2z_A 210 KDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI 282 (395)
T ss_dssp TTCSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEE
T ss_pred ccccccccccccCCCCeEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEe
Confidence 99999999997532 357888999999999999999999999878889999999999996
Q ss_pred ccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccc
Q 003005 399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478 (858)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~ 478 (858)
+.+
T Consensus 283 ~~~----------------------------------------------------------------------------- 285 (395)
T 2z2z_A 283 DSN----------------------------------------------------------------------------- 285 (395)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 422
Q ss_pred cCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEE
Q 003005 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVAC 558 (858)
Q Consensus 479 ~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (858)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHH
Q 003005 559 ILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI 638 (858)
Q Consensus 559 i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~V 638 (858)
+.++.||++|| +|+|||++|+|++ +++.|..++|||||||||
T Consensus 286 -------------~~~a~fS~~G~---------------~v~APG~~i~s~~----------~~~~y~~~sGTS~AaP~V 327 (395)
T 2z2z_A 286 -------------DNIASFSNRQP---------------EVSAPGVDILSTY----------PDDSYETLMGTAMATPHV 327 (395)
T ss_dssp -------------SCBCTTSCSSC---------------SEEEECSSEEEEE----------TTTEEEEEESHHHHHHHH
T ss_pred -------------CCCCcccCCCC---------------CEEeCCCCeeeec----------CCCceEecCCHHHHHHHH
Confidence 24788999997 5799999999998 456899999999999999
Q ss_pred HHHHHHHHHhCC-------------CCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccc
Q 003005 639 AGLAALIKQKFP-------------SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATA 705 (858)
Q Consensus 639 AG~aALl~q~~P-------------~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~ 705 (858)
||++|||+|++| .|++.+||++|++||+++...+ .+..||+|+||+.+
T Consensus 328 aG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g-------------------~~~~~G~G~vd~~~ 388 (395)
T 2z2z_A 328 SGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-------------------WDADYGYGVVRAAL 388 (395)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS-------------------SBTTTBTCBCCHHH
T ss_pred HHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC-------------------CCCCccCceeCHHH
Confidence 999999999999 9999999999999999875432 24679999999999
Q ss_pred cCCC
Q 003005 706 SLDP 709 (858)
Q Consensus 706 A~~~ 709 (858)
|++.
T Consensus 389 A~~~ 392 (395)
T 2z2z_A 389 AVQA 392 (395)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-54 Score=495.46 Aligned_cols=337 Identities=21% Similarity=0.276 Sum_probs=260.9
Q ss_pred CceeEEEEEcceeeEEEEEcCHHHHHHHhc-CCCeeEEEeCccccccCCCCCc----------ccC-----CCccccccc
Q 003005 116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSR-RREVANVVSDFSVRTATTHTPQ----------FLG-----LPQGAWIQE 179 (858)
Q Consensus 116 ~~~~~~~~~~~~~ng~~v~~~~~~l~~L~~-~p~V~~v~~~~~~~~~~~~~~~----------~~~-----~~~~~w~~~ 179 (858)
.+.++++.|. .+++|+++++++++++|++ +|+|++|+++..+++....... .|+ .+..+|..
T Consensus 64 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~- 141 (471)
T 3t41_A 64 KSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD- 141 (471)
T ss_dssp HTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG-
T ss_pred CCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc-
Confidence 3578888885 5999999999999999999 9999999999888765432211 122 12235554
Q ss_pred CCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCC
Q 003005 180 GGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQ 259 (858)
Q Consensus 180 ~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~ 259 (858)
+++|+||+|||||||||++||+|.++..... ..++....|... ..+...
T Consensus 142 ---~~~G~gv~VaViDtGid~~Hp~~~~~~~~~~-----------------------~~~~~~~~~~~~-----~~~~~~ 190 (471)
T 3t41_A 142 ---LPKHANTKIAIIDTGVMKNHDDLKNNFSTDS-----------------------KNLVPLNGFRGT-----EPEETG 190 (471)
T ss_dssp ---CCSSCCCCEEEEESCCCTTCTTTTTTBCTTC-----------------------EECCCTTCGGGC-----CTTCCC
T ss_pred ---cCCCCCcEEEEEeCCCCCCChhHhcCcccCC-----------------------cccccCCCccCC-----CcccCC
Confidence 6899999999999999999999998654100 001111111111 011112
Q ss_pred CCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q 003005 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISL 339 (858)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 339 (858)
+...+.|..||||||||||+|+. .+.||||+|+|+.+|+++. ..+..+++++||+|+++++++||||
T Consensus 191 ~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~-~~~~~~~i~~ai~~a~~~g~~Vin~ 257 (471)
T 3t41_A 191 DVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGS-KKTELLWVSKAIVQAANDGNQVINI 257 (471)
T ss_dssp CTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSS-SCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccC-CCCcHHHHHHHHHHHHhCCCCEEEe
Confidence 23456789999999999999873 3579999999999999987 5688899999999999999999999
Q ss_pred ccCCCCCCC--CC-------CccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC------------------CCCCCCce
Q 003005 340 SITPNRRPP--GI-------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS------------------MSSFSPWI 392 (858)
Q Consensus 340 S~G~~~~~~--~~-------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~------------------~~~~~p~v 392 (858)
|||...... .. ....+.+..+++.+.++|++||+||||+|..... .|+..+++
T Consensus 258 S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~v 337 (471)
T 3t41_A 258 SVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNV 337 (471)
T ss_dssp CCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTE
T ss_pred CCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCe
Confidence 999732100 00 1234678889999999999999999999986532 56777888
Q ss_pred EEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEE
Q 003005 393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472 (858)
Q Consensus 393 itVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~ 472 (858)
|+|||++.+
T Consensus 338 itVgA~~~~----------------------------------------------------------------------- 346 (471)
T 3t41_A 338 VTVGSTDQK----------------------------------------------------------------------- 346 (471)
T ss_dssp EEEEEECTT-----------------------------------------------------------------------
T ss_pred EEEEeeCCC-----------------------------------------------------------------------
Confidence 888875421
Q ss_pred eccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEe
Q 003005 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK 552 (858)
Q Consensus 473 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 552 (858)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCce----------------------EEeec
Q 003005 553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS----------------------IWAAW 610 (858)
Q Consensus 553 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~----------------------I~Sa~ 610 (858)
+.++.||++||+. |||+|||++ |+++.
T Consensus 347 -------------------~~~a~fS~~G~~~------------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~ 395 (471)
T 3t41_A 347 -------------------SNLSEFSNFGMNY------------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTA 395 (471)
T ss_dssp -------------------SSBCTTCCBCTTT------------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEEC
T ss_pred -------------------CCCCCccCCCCCC------------CeEEecCCCcccccccccccccccccccCceeEecC
Confidence 2478899999964 399999987 88888
Q ss_pred cCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC-CCCHHHHHHHHHccccccccCCCccccccccCCCCCCCC
Q 003005 611 SSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP-SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQS 689 (858)
Q Consensus 611 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 689 (858)
+++.|..++|||||||||||++|||+|++| .++|++||++|++||++...
T Consensus 396 ----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------------- 446 (471)
T 3t41_A 396 ----------NNGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------------- 446 (471)
T ss_dssp ----------TTSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------------
T ss_pred ----------CCCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------------
Confidence 456899999999999999999999999999 89999999999999987532
Q ss_pred CCCCCccccccccccccCCCC
Q 003005 690 PATPFDMGSGFVNATASLDPG 710 (858)
Q Consensus 690 ~~~~~~~G~G~vd~~~A~~~~ 710 (858)
.++..||+|+||+.+|++..
T Consensus 447 -~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 447 -KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp -CCHHHHTTCBBCHHHHTTTT
T ss_pred -CCcCccccChhCHHHHHHHH
Confidence 23468999999999999753
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=513.77 Aligned_cols=340 Identities=21% Similarity=0.233 Sum_probs=40.6
Q ss_pred ceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccccCCCCCcccCCCc--------ccccccCCCCCCCCC
Q 003005 117 KYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQ--------GAWIQEGGYETAGEG 188 (858)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~--------~~w~~~~~~~~~G~G 188 (858)
..++++.|..+|+||+++++++++++|+++|+|++||++..+.... ..|++.. ..|. .+.+|+|
T Consensus 108 ~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~----~pWgL~~i~~~~~~~~~w~----~~~~G~G 179 (692)
T 2p4e_P 108 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS----IPWNLERITPPRYRADEYQ----PPDGGSL 179 (692)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-----------------------------------
T ss_pred ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC----CCcchhhcccccccccccc----cCCCCCC
Confidence 3578899999999999999999999999999999999998875421 1133321 1343 3689999
Q ss_pred cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 189 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
|+|||||||||++||+|.++... ..|.. +.+. +.......+.|.+
T Consensus 180 V~VaVIDTGId~~HpdL~gr~~~------~~~~~----------------------~~d~-------dg~~~~~~~~D~~ 224 (692)
T 2p4e_P 180 VEVYLLDTSIQSDHREIEGRVMV------TDFEN----------------------VPEE-------DGTRFHRQASKCD 224 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEcCCCCCCChhhcCceEe------ccccc----------------------ccCC-------CCCcccCCCCCCC
Confidence 99999999999999999986430 00100 0000 0000013456889
Q ss_pred CCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC------CCCEEEEccC
Q 003005 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDIISLSIT 342 (858)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~~VIN~S~G 342 (858)
||||||||||+|+. .||||+|+|+++|+++..+.+..+++++||+|++++ +++|||||||
T Consensus 225 GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlG 290 (692)
T 2p4e_P 225 SHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA 290 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCC
Confidence 99999999999862 499999999999999875557888999999999986 8999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeec
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~ 421 (858)
+.. ...++.+++.+.++|++||+||||+|.+.. ..|+..+++|+|||++.+....
T Consensus 291 g~~--------s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~a---------------- 346 (692)
T 2p4e_P 291 GGY--------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPV---------------- 346 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC--------cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCcc----------------
Confidence 642 356778888999999999999999998754 3478899999999975331000
Q ss_pred CCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEE
Q 003005 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (858)
Q Consensus 422 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 501 (858)
T Consensus 347 -------------------------------------------------------------------------------- 346 (692)
T 2p4e_P 347 -------------------------------------------------------------------------------- 346 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccC
Q 003005 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (858)
Q Consensus 502 ~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 581 (858)
..-+.||+||
T Consensus 347 ----------------------------------------------------------------------~~ss~fSn~G 356 (692)
T 2p4e_P 347 ----------------------------------------------------------------------TLGTLGTNFG 356 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------ccccccCCCC
Confidence 0012388888
Q ss_pred CCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003005 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661 (858)
Q Consensus 582 Pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L 661 (858)
|.+ ||+|||++|+|+++.. ++.|..++|||||||||||++|||+|++|+|+|+|||++|
T Consensus 357 ~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L 415 (692)
T 2p4e_P 357 RCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRL 415 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cce-------------eEEecCCcEEeeccCC--------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 744 9999999999998532 2479999999999999999999999999999999999999
Q ss_pred HccccccccCCCccccccccCCCCCCC-CCCCCCcccccc--ccccccCC
Q 003005 662 STSATLYDKNGGPIMAQRAYAKPDENQ-SPATPFDMGSGF--VNATASLD 708 (858)
Q Consensus 662 ~~TA~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~G~G~--vd~~~A~~ 708 (858)
++||.+....+.++........|+.-. .+.....+|+|+ .++..+..
T Consensus 416 ~~tA~~~~~~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 416 IHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp --------------------------------------------------
T ss_pred HHhccccccCCCCCccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence 999986432221110000000111001 111345678888 88877764
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-53 Score=495.46 Aligned_cols=338 Identities=23% Similarity=0.307 Sum_probs=253.3
Q ss_pred eeEEEEEcceeeEEEEEcCH----HHHHHHh--cCCCeeEEEeCccccccC----CCC----------------------
Q 003005 118 YLKLYSYHYLINGFSVFVTP----QQAEKLS--RRREVANVVSDFSVRTAT----THT---------------------- 165 (858)
Q Consensus 118 ~~~~~~~~~~~ng~~v~~~~----~~l~~L~--~~p~V~~v~~~~~~~~~~----~~~---------------------- 165 (858)
.++.+++. .+++++++++. +.+++|+ ++|+|++|||++.+++.. ...
T Consensus 53 ~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (671)
T 1r6v_A 53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL 131 (671)
T ss_dssp CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred CeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCcccccccccccccccccccccccc
Confidence 46677775 68899999864 3457776 489999999997765431 000
Q ss_pred -Ccc-----cCCCccc-ccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCce
Q 003005 166 -PQF-----LGLPQGA-WIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRK 238 (858)
Q Consensus 166 -~~~-----~~~~~~~-w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~k 238 (858)
... ++++. + |+. ++|+||+|||||||||++||+|.++..
T Consensus 132 ~~~~W~l~~I~~~~-a~w~~-----~tG~gV~VAVIDTGVd~~HpdL~~~~~---------------------------- 177 (671)
T 1r6v_A 132 SNELWGLEAIGVTQ-QLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQVI---------------------------- 177 (671)
T ss_dssp GGGCHHHHHTTCCH-HHHHH-----CSCTTCEEEEEESCCBTTSGGGTTTBC----------------------------
T ss_pred cccCCchhccCCch-hhhhc-----cCCCCCEEEEEeCCCCCCCccccccEE----------------------------
Confidence 001 22222 3 554 789999999999999999999998643
Q ss_pred eeeeeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCC----
Q 003005 239 LIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS---- 314 (858)
Q Consensus 239 v~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~---- 314 (858)
.++++..+. ..+ ...+..|.+||||||||||+|..+ + .++.||||+|+|+++|+++..
T Consensus 178 --~g~~~~~~~-----~~p--~~~d~~d~~gHGThVAGiIAa~~n------g---~gv~GVAP~A~I~~vkv~~~~~~~~ 239 (671)
T 1r6v_A 178 --AGYRPAFDE-----ELP--AGTDSSYGGSAGTHVAGTIAAKKD------G---KGIVGVAPGAKIMPIVIFDDPALVG 239 (671)
T ss_dssp --CEEEGGGTE-----EEC--TTCBCCTTCSHHHHHHHHHHCCCS------S---SSCCCSCTTSEEEEEESBCCHHHHC
T ss_pred --ecccccCCC-----cCC--CCCCCccCCCcchhhhhhhhccCC------C---CceEEECCCCEEEEEEeccCccccC
Confidence 001110000 000 012234678999999999999742 1 246799999999999999751
Q ss_pred -CC-CCHHHHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCc
Q 003005 315 -FG-GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPW 391 (858)
Q Consensus 315 -~~-~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~ 391 (858)
.+ .....+++||+||+++|++|||||||+.. +...+.++++.|.++|++||+||||+|.+. ..+|+..++
T Consensus 240 g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~ 312 (671)
T 1r6v_A 240 GNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPG 312 (671)
T ss_dssp TTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTT
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCC
Confidence 12 34567899999999999999999999742 235788999999999999999999999875 567888999
Q ss_pred eEEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEE
Q 003005 392 IFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLIC 471 (858)
Q Consensus 392 vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~ 471 (858)
+|+|||++.+..
T Consensus 313 VItVgA~d~~g~-------------------------------------------------------------------- 324 (671)
T 1r6v_A 313 VIQVAALDYYGG-------------------------------------------------------------------- 324 (671)
T ss_dssp CEEEEEEEEETT--------------------------------------------------------------------
T ss_pred eEEEEEEcCCCC--------------------------------------------------------------------
Confidence 999999753210
Q ss_pred EeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEE
Q 003005 472 SYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKII 551 (858)
Q Consensus 472 ~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 551 (858)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCC--------ccccCc
Q 003005 552 KFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDS--------VEFQGE 623 (858)
Q Consensus 552 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~~ 623 (858)
...++.||++||.. ||+|||++|+|+++...... ....++
T Consensus 325 -------------------~~~~a~fSn~G~~v-------------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~ 372 (671)
T 1r6v_A 325 -------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGG 372 (671)
T ss_dssp -------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSC
T ss_pred -------------------ceeeccccCCCCCe-------------eEEecCCCEEeecCCCCccccccccccccccCCC
Confidence 01268899999975 99999999999987542210 011345
Q ss_pred cceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccc
Q 003005 624 SFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703 (858)
Q Consensus 624 ~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~ 703 (858)
.|..++|||||||||||++|||+|++|+|+|+|||++|++||+++...+. +..+|+|+||+
T Consensus 373 ~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~-------------------d~~~G~G~vna 433 (671)
T 1r6v_A 373 TYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------------------DHDTGYGLVKL 433 (671)
T ss_dssp CEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC-------------------BTTTBTCBCCH
T ss_pred ceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC-------------------CCCcccceeCH
Confidence 89999999999999999999999999999999999999999998754432 45799999999
Q ss_pred cccCCCCeeee
Q 003005 704 TASLDPGLVFD 714 (858)
Q Consensus 704 ~~A~~~~~v~~ 714 (858)
.+|++..+..+
T Consensus 434 ~~Al~~~l~~~ 444 (671)
T 1r6v_A 434 DAALQGPLPTQ 444 (671)
T ss_dssp HHHHHCCCCSS
T ss_pred HHHhhhhcCCC
Confidence 99998765443
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-52 Score=472.50 Aligned_cols=389 Identities=20% Similarity=0.289 Sum_probs=271.6
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +|+||+|||||||||++||+|.++.. ..+++..
T Consensus 11 i~~~~-~w~~------~g~gv~VaViDtGvd~~Hp~l~~~~~------------------------------~~~~~~~- 52 (441)
T 1y9z_A 11 VGATV-LSDS------QAGNRTICIIDSGYDRSHNDLNANNV------------------------------TGTNNSG- 52 (441)
T ss_dssp TTCSS-SCCT------TGGGCEEEEEESCCCTTSTTTTTSEE------------------------------EECCCTT-
T ss_pred cChhh-hhhc------CCCCcEEEEEcCCCCCCChhHhcCcc------------------------------cCcccCC-
Confidence 44444 6764 47799999999999999999987532 1111110
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcc--eeeeeehhcCCCCCCHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS--HIAVYKALYKSFGGFAADVVAAI 326 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A--~l~~~kv~~~~~~~~~~~i~~ai 326 (858)
..++..+.|..||||||||||+|..+. .++.||||+| +|+.+|+++....+..+++++||
T Consensus 53 ---------~~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai 114 (441)
T 1y9z_A 53 ---------TGNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAI 114 (441)
T ss_dssp ---------SCCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHH
T ss_pred ---------CCCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHH
Confidence 011234568899999999999997531 2368999995 89999999874447778999999
Q ss_pred HHHHHC-CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceee
Q 003005 327 DQAAQD-GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYT 405 (858)
Q Consensus 327 ~~a~~~-g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~ 405 (858)
+||+++ |++|||||||.... ...+.++++++.++|++||+||||+|.....+|+..+++|+|||++.+....
T Consensus 115 ~~a~~~~g~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~ 187 (441)
T 1y9z_A 115 DTCVNSGGANVVTMSLGGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA 187 (441)
T ss_dssp HHHHHTTCCSEEEECCCBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBC
T ss_pred HHHHHhcCCcEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCC
Confidence 999999 99999999997532 2467889999999999999999999998888899999999999998876543
Q ss_pred eEEEeCCceEEE-----------------------eeecCCCC----CceeE--EEEcccccCCCCcccCCCCccccCCC
Q 003005 406 NSIILGNSLTIS-----------------------GVGLAPGT----DKMYT--LISALHALNNNTTTTDDMYVGECQDS 456 (858)
Q Consensus 406 ~~~~~~~g~~~~-----------------------~~~~~~~~----~~~~~--l~~~~~~~~~~~~~~~~~~~~~c~~~ 456 (858)
.+..++....+. +.++.... ...++ +.+........ .......|...
T Consensus 188 ~~S~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~----~~~~~~~C~~~ 263 (441)
T 1y9z_A 188 AFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINAS----ATGALAECTVN 263 (441)
T ss_dssp TTSCCCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCE----EEEEEEEEEEE
T ss_pred ccccCCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccc----cccchhccccc
Confidence 333232222111 11110000 00000 00111100000 00112346532
Q ss_pred -CCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcc-----cCCCCCCCCeEEecChhhH
Q 003005 457 -SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ-----LNPTPMKMPGIIIPSPDDS 530 (858)
Q Consensus 457 -~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~~~~~~~ip~~~i~~~~~~ 530 (858)
..+...+++|||++|.|+.+. .....+..+..+++++|+.|+|++|+....+.. .....+.+|.+.+ +..++
T Consensus 264 ~~~~~~~~~~gkivl~~rg~~~-~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v-~~~~g 341 (441)
T 1y9z_A 264 GTSFSCGNMANKICLVERVGNQ-GSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSV-DRATG 341 (441)
T ss_dssp TTEEECCCCTTEEEEEECCSCS-SSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEE-CHHHH
T ss_pred cccccCCCccccEEEEeccccC-cccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEE-eHHHH
Confidence 245677899999999985321 112356788999999999999999986544321 1223467888776 56777
Q ss_pred HHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeec
Q 003005 531 KILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAW 610 (858)
Q Consensus 531 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~ 610 (858)
..|++++.+ .+. +++.
T Consensus 342 ~~l~~~~~~----------------------------------------------------------~~t------~~~~ 357 (441)
T 1y9z_A 342 LALKAKLGQ----------------------------------------------------------STT------VSNQ 357 (441)
T ss_dssp HHHHTTTTS----------------------------------------------------------EEE------EEEE
T ss_pred HHHHHHhcC----------------------------------------------------------Ccc------cccc
Confidence 777654321 000 0111
Q ss_pred cCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCC
Q 003005 611 SSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSP 690 (858)
Q Consensus 611 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~ 690 (858)
.++.|..+||||||||||||++|||+|+||+|+|++||++||+||++++..+.
T Consensus 358 ----------~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~----------------- 410 (441)
T 1y9z_A 358 ----------GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR----------------- 410 (441)
T ss_dssp ----------EEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC-----------------
T ss_pred ----------cCCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCCC-----------------
Confidence 34589999999999999999999999999999999999999999998765432
Q ss_pred CCCCccccccccccccCCCCeeeeCCcchhhhhccccCCC
Q 003005 691 ATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGS 730 (858)
Q Consensus 691 ~~~~~~G~G~vd~~~A~~~~~v~~~~~~~~~~~~~~~~~~ 730 (858)
+.+||+|+||+.+|+ ||+.|+|..+.+
T Consensus 411 --~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 411 --DNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp --BTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred --cccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 457999999999996 788999988753
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=437.96 Aligned_cols=257 Identities=32% Similarity=0.447 Sum_probs=208.8
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|+. +..|+||+|||||||||++||+|.++ ++..++|.+.
T Consensus 23 aw~~----~~g~~gv~VaViDtGvd~~hp~l~~~------------------------------~~~~~~~~~~------ 62 (280)
T 1dbi_A 23 AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK------------------------------VIKGYDFVDN------ 62 (280)
T ss_dssp HTTT----CCCCTTCEEEEEESCCCTTSTTTTTT------------------------------EEEEEETTTT------
T ss_pred HHhh----cCCCCCCEEEEEeCCcCCCChhhccC------------------------------cccceeccCC------
Confidence 6665 55667999999999999999999864 3334455432
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
...+.|..+|||||||||+|..++. .++.||||+|+|+.+|+++....+..++++++|+|++++|+
T Consensus 63 ------~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~ 128 (280)
T 1dbi_A 63 ------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA 128 (280)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 1345688999999999999975332 23579999999999999987555888999999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCce
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 414 (858)
+|||||||.... ...++.+++.+.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 129 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 188 (280)
T 1dbi_A 129 EVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY------------- 188 (280)
T ss_dssp SEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-------------
T ss_pred CEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-------------
Confidence 999999997532 357888999999999999999999998877888999999999986422
Q ss_pred EEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhC
Q 003005 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (858)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~ 494 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcc
Q 003005 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (858)
Q Consensus 495 Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 574 (858)
+.+
T Consensus 189 -----------------------------------------------------------------------------~~~ 191 (280)
T 1dbi_A 189 -----------------------------------------------------------------------------DRL 191 (280)
T ss_dssp -----------------------------------------------------------------------------SCB
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 236
Q ss_pred ccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCH
Q 003005 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (858)
Q Consensus 575 a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp 654 (858)
+.||++||.. ||+|||++|+++. .++.|..++|||||||||||++|||++ |.+++
T Consensus 192 ~~~S~~G~~~-------------dv~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~ 246 (280)
T 1dbi_A 192 ASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAALLAS--QGRNN 246 (280)
T ss_dssp CTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHH--TTCCH
T ss_pred CCCCCCCCCc-------------eEEEecCCeEeec----------CCCCEEEccCHHHHHHHHHHHHHHHHC--CCCCH
Confidence 8899999865 8999999999998 456899999999999999999999987 89999
Q ss_pred HHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 655 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|||++|++||+++... ...||+|+||+.+|++
T Consensus 247 ~~v~~~L~~ta~~~~~~---------------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 247 IEIRQAIEQTADKISGT---------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHHHTSBCCTTB---------------------TTTBSSEECCHHHHHT
T ss_pred HHHHHHHHHhCccCCCC---------------------CCcccCCEECHHHHhc
Confidence 99999999999987532 2368999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-53 Score=467.89 Aligned_cols=305 Identities=22% Similarity=0.226 Sum_probs=194.9
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
.++.+ +|.. +..|+||+|||||||||++||+|++... .+....|...++.... .......+..+
T Consensus 18 pG~~~-~w~~----~~g~~~V~VaViDtGiD~~Hpdf~g~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 81 (357)
T 4h6x_A 18 PGLAD-LHNQ----TLGDPQITIVIIDGDPDYTLSCFEGAEV---SKVFPYWHEPAEPITP--------EDYAAFQSIRD 81 (357)
T ss_dssp TTHHH-HHHH----CSCCTTSEEEEEESCCCTTSGGGTTCEE---EECCCTTSCCCCCCCH--------HHHHHHHHHHH
T ss_pred cCHHH-HHHh----cCCCCCCEEEEEcCCCCCCChhHcCCCc---ccccccccccccccCc--------ccccccccccC
Confidence 34544 8887 5678999999999999999999998654 3334455543321100 00000000000
Q ss_pred h------hhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC-----C
Q 003005 249 A------ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-----G 317 (858)
Q Consensus 249 ~------~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~-----~ 317 (858)
. ..........+...+.|.+||||||||||+|+.+ +++.||||+|+|+.+|++....+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~ 151 (357)
T 4h6x_A 82 QGLKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVM 151 (357)
T ss_dssp HTCCSHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC---------
T ss_pred ccccccccccccccccCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccc
Confidence 0 0000000111223345678999999999999753 23579999999999999754221 2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEee
Q 003005 318 FAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGA 397 (858)
Q Consensus 318 ~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA 397 (858)
...+++++|+|++++|++|||||||..... ....+.+..+++.+.++|++||+||||+|.....+|+..+++|+|||
T Consensus 152 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~---~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga 228 (357)
T 4h6x_A 152 SPLNLARAIDLALELGANIIHCAFCRPTQT---SEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGA 228 (357)
T ss_dssp -CHHHHHHHHHHHHTTCSEEEEC--------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEeeccccCCcc---ccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEE
Confidence 335688999999999999999999975433 33457889999999999999999999999988888999999999999
Q ss_pred cccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEecccc
Q 003005 398 ASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRF 477 (858)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~ 477 (858)
++.+
T Consensus 229 ~~~~---------------------------------------------------------------------------- 232 (357)
T 4h6x_A 229 AKVD---------------------------------------------------------------------------- 232 (357)
T ss_dssp ECTT----------------------------------------------------------------------------
T ss_pred eccC----------------------------------------------------------------------------
Confidence 6422
Q ss_pred ccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeE
Q 003005 478 VLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVA 557 (858)
Q Consensus 478 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (858)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHH
Q 003005 558 CILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPH 637 (858)
Q Consensus 558 ~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~ 637 (858)
+.++.||+||+. +.||||+|||.+|+|+.+ .++.|..++||||||||
T Consensus 233 --------------~~~~~fSn~G~~----------~~~~di~APG~~i~s~~~---------~~~~~~~~sGTS~AaP~ 279 (357)
T 4h6x_A 233 --------------GTPCHFSNWGGN----------NTKEGILAPGEEILGAQP---------CTEEPVRLTGTSMAAPV 279 (357)
T ss_dssp --------------SSBCTTCC---C----------TTTTEEEEECSSEEECCT---------TCSCCEEECSHHHHHHH
T ss_pred --------------CcccccccCCCC----------CCccceeecCCCeEeccC---------CCCcccccCcHHHHHHH
Confidence 247889999975 368999999999999985 23467889999999999
Q ss_pred HHHHHHHHHH----hCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 638 IAGLAALIKQ----KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 638 VAG~aALl~q----~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
|||++|||++ ++|.|+++|||++|++||++++... ...+.+||+|+||+.+|++
T Consensus 280 vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~-----------------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 280 MTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV-----------------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------------------CTTCBCCHHHHHH
T ss_pred HHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC-----------------CCCcccceeEEecHHHHHH
Confidence 9999999995 4668999999999999999875322 1235679999999999986
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=434.55 Aligned_cols=261 Identities=31% Similarity=0.487 Sum_probs=219.0
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|+. .+|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 18 i~~~~-aw~~-----~~G~gv~VaViDtGvd~~h~~l~~~------------------------------~~~~~~~~~~ 61 (279)
T 1thm_A 18 IQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK------------------------------VVGGWDFVDN 61 (279)
T ss_dssp TTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTT------------------------------EEEEEETTTT
T ss_pred CChHH-HHhc-----CCCCCCEEEEEccCCCCCCcchhcC------------------------------ccccccccCC
Confidence 34444 7876 4799999999999999999999964 3334455432
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
...+.|..+|||||||||+|..+++ .++.||||+|+|+.+|+++....+..++++++|+|
T Consensus 62 ------------~~~~~d~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~ 121 (279)
T 1thm_A 62 ------------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITY 121 (279)
T ss_dssp ------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHH
T ss_pred ------------CCCCCCCCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHH
Confidence 1345688999999999999975432 23579999999999999987556788999999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEE
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI 408 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~ 408 (858)
|+++|++|||||||.... ...+.++++.+.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 122 a~~~g~~Vin~S~G~~~~-------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------- 187 (279)
T 1thm_A 122 AADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------- 187 (279)
T ss_dssp HHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------
T ss_pred HHHCCCCEEEEecCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC-------
Confidence 999999999999997532 357888999999999999999999999888889999999999986422
Q ss_pred EeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHH
Q 003005 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (858)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 488 (858)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccC
Q 003005 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (858)
Q Consensus 489 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 568 (858)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHh
Q 003005 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648 (858)
Q Consensus 569 ~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 648 (858)
+.++.||++||.. ||+|||++|++++ +++.|..++|||||||||||++||| +
T Consensus 188 ---~~~~~fS~~G~~~-------------dv~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll--~ 239 (279)
T 1thm_A 188 ---DNKSSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSMATPHVAGVAGLL--A 239 (279)
T ss_dssp ---SCBCTTCCCCTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHH--H
T ss_pred ---CCcCCcCCCCCce-------------EEEEcCCCeEEEe----------CCCCEEEcccHHHHHHHHHHHHHHH--H
Confidence 2367899999865 8999999999998 4568999999999999999999999 5
Q ss_pred CCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 649 ~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|.+++++||++|++||+++...+ ..||+|+||+.+|++
T Consensus 240 ~p~~t~~~v~~~L~~ta~~~~~~~---------------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 240 SQGRSASNIRAAIENTADKISGTG---------------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TTTCCHHHHHHHHHHTCBCCTTBT---------------------TTBSSEECCHHHHHH
T ss_pred CCCcCHHHHHHHHHHhCccCCCCC---------------------ccccCCeeCHHHHhc
Confidence 899999999999999999875432 368999999999974
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=432.19 Aligned_cols=254 Identities=33% Similarity=0.494 Sum_probs=214.9
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||| .+||+|+. ...++|..+
T Consensus 16 a~~~----g~~G~gv~VaViDtGi-~~h~~l~~--------------------------------~~~~~~~~~------ 52 (269)
T 1gci_A 16 AHNR----GLTGSGVKVAVLDTGI-STHPDLNI--------------------------------RGGASFVPG------ 52 (269)
T ss_dssp HHHT----TCSCTTCEEEEEESCC-CCCTTCCE--------------------------------EEEEECSTT------
T ss_pred HHhc----CCCCCCCEEEEECCCC-CCCHhhcc--------------------------------cCCcccCCC------
Confidence 6765 7899999999999999 89999942 112233221
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
...+.|..+|||||||||+|..+. ..+.||||+|+|+.+|+++....+..++++++|+|++++++
T Consensus 53 ------~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 117 (269)
T 1gci_A 53 ------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM 117 (269)
T ss_dssp ------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCChHHHHHHHhcCcCC---------CCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCC
Confidence 123567899999999999987321 23579999999999999987556788999999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCce
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 414 (858)
+|||||||.... ...++.+++.+.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 118 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 177 (269)
T 1gci_A 118 HVANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------- 177 (269)
T ss_dssp SEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------------
T ss_pred eEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-------------
Confidence 999999997532 357888999999999999999999999888889999999999986421
Q ss_pred EEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhC
Q 003005 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (858)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~ 494 (858)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcc
Q 003005 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (858)
Q Consensus 495 Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 574 (858)
+.+
T Consensus 178 -----------------------------------------------------------------------------~~~ 180 (269)
T 1gci_A 178 -----------------------------------------------------------------------------NNR 180 (269)
T ss_dssp -----------------------------------------------------------------------------SCB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 236
Q ss_pred ccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCH
Q 003005 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (858)
Q Consensus 575 a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp 654 (858)
+.||++||.. ||+|||++|++++ +++.|..++|||||||||||++|||+|++|+|++
T Consensus 181 ~~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~ 237 (269)
T 1gci_A 181 ASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237 (269)
T ss_dssp CTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred CCCCCCCCCc-------------ceEecCCCeEeec----------CCCCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 7899999865 9999999999998 4568999999999999999999999999999999
Q ss_pred HHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 655 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|||++|++||+++. ++..||+|+||+.+|++
T Consensus 238 ~~v~~~L~~tA~~~g----------------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 238 VQIRNHLKNTATSLG----------------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHTSBCCS----------------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHhCccCC----------------------CCCCcccCccCHHHHcC
Confidence 999999999999763 13479999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-51 Score=434.83 Aligned_cols=255 Identities=32% Similarity=0.510 Sum_probs=212.9
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|+. ...++|..+
T Consensus 16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~--------------------------------~~g~~~~~~------ 53 (274)
T 1r0r_E 16 VQAQ----GFKGANVKVAVLDTGIQASHPDLNV--------------------------------VGGASFVAG------ 53 (274)
T ss_dssp HHHH----TCSCTTCEEEEEESCCCTTCTTCCE--------------------------------EEEEECSTT------
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCCHhHcC--------------------------------CCCccccCC------
Confidence 6765 7899999999999999999999942 112233221
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
...+.|..+|||||||||+|..+. ..+.||||+|+|+.+|+++....+..++++++|+|++++++
T Consensus 54 ------~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~ 118 (274)
T 1r0r_E 54 ------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 118 (274)
T ss_dssp ------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCCHHHHHHHHHccCCC---------CceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 122457889999999999987321 23579999999999999987555788899999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC----CCCCCCCCceEEEeecccCceeeeEEEe
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP----KSMSSFSPWIFTVGAASHDRIYTNSIIL 410 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~ 410 (858)
+|||||||.... ...+..+++++.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 119 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------- 182 (274)
T 1r0r_E 119 DVINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------- 182 (274)
T ss_dssp SEEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------
T ss_pred CEEEeCCCCCCC-------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC---------
Confidence 999999997532 35788899999999999999999999763 4567888999999986421
Q ss_pred CCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHH
Q 003005 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (858)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~ 490 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCC
Q 003005 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (858)
Q Consensus 491 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 570 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC
Q 003005 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (858)
Q Consensus 571 ~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 650 (858)
+.++.||++||.. ||+|||.+|++++ +++.|..++|||||||||||++|||+|++|
T Consensus 183 -~~~~~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p 238 (274)
T 1r0r_E 183 -SNRASFSSVGAEL-------------EVMAPGAGVYSTY----------PTNTYATLNGTSMASPHVAGAAALILSKHP 238 (274)
T ss_dssp -SCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHST
T ss_pred -CCcCccCCCCCCc-------------eEEeCCCCeEeec----------CCCCEEEeccHHHHHHHHHHHHHHHHHHCC
Confidence 2367899999854 9999999999998 456899999999999999999999999999
Q ss_pred CCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 651 ~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|+++|||++|++||+++. ++..||+|+||+.+|++
T Consensus 239 ~lt~~~v~~~L~~tA~~~g----------------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 239 NLSASQVRNRLSSTATYLG----------------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp TCCHHHHHHHHHHTCBCCS----------------------CHHHHTTCBCCHHHHTC
T ss_pred CCCHHHHHHHHHHhCcccC----------------------CCCCcccCccCHHHHhC
Confidence 9999999999999999763 13479999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=433.00 Aligned_cols=257 Identities=30% Similarity=0.457 Sum_probs=213.8
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|+.. .+++|..+
T Consensus 16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~~--------------------------------~g~~~~~~------ 53 (281)
T 1to2_E 16 LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVA--------------------------------GGASMVPS------ 53 (281)
T ss_dssp HHHH----TCSCTTCEEEEEESCCCTTCTTCCEE--------------------------------EEEECCTT------
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCCHHHcCc--------------------------------CCccccCC------
Confidence 6765 78999999999999999999999521 11222211
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
+.....|..+|||||||||+|..+. ..+.||||+|+|+.+|+++....+..++++++|+|++++++
T Consensus 54 -----~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~ 119 (281)
T 1to2_E 54 -----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM 119 (281)
T ss_dssp -----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred -----CCCCCCCCCCcHHHHHHHHhccCCC---------CcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCC
Confidence 1112357889999999999997421 23579999999999999987555788999999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC----CCCCCCCCceEEEeecccCceeeeEEEe
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP----KSMSSFSPWIFTVGAASHDRIYTNSIIL 410 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~ 410 (858)
+|||||||.... ...+..+++.+.++|++||+||||+|... ..+|+..|++|+|||++.+
T Consensus 120 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------- 183 (281)
T 1to2_E 120 DVINMSLGGPSG-------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--------- 183 (281)
T ss_dssp SEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------
T ss_pred cEEEECCcCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC---------
Confidence 999999997532 35788899999999999999999999862 4567888999999986421
Q ss_pred CCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHH
Q 003005 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (858)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~ 490 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCC
Q 003005 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (858)
Q Consensus 491 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 570 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC
Q 003005 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (858)
Q Consensus 571 ~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 650 (858)
+.++.||++||.. ||+|||.+|+++. +++.|..++|||||||||||++|||+|++|
T Consensus 184 -~~~~~fS~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p 239 (281)
T 1to2_E 184 -NQRASFSSVGPEL-------------DVMAPGVSIQSTL----------PGNKYGAYNGTSMASPHVAGAAALILSKHP 239 (281)
T ss_dssp -SCBCTTCCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECBHHHHHHHHHHHHHHHHHHST
T ss_pred -CCcCCcCCCCCCc-------------eEEecCCCeEeec----------CCCCEEecCcHHHHHHHHHHHHHHHHHhCC
Confidence 2367899999865 8999999999998 456899999999999999999999999999
Q ss_pred CCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 651 ~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
+|+++|||++|++||+++. +++.||+|+||+.+|++.
T Consensus 240 ~lt~~~v~~~L~~tA~~~g----------------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 240 NWTNTQVRSSLENTTTKLG----------------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp TCCHHHHHHHHHTTCBCCS----------------------CHHHHTTCBCCHHHHTSS
T ss_pred CCCHHHHHHHHHhhCcccC----------------------CCCCcccceecHHHHhhh
Confidence 9999999999999999763 134799999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-51 Score=438.61 Aligned_cols=265 Identities=23% Similarity=0.297 Sum_probs=211.2
Q ss_pred CCC-CCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 184 TAG-EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 184 ~~G-~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
++| +||+|||||||||++||+|.++.. ..+++... ....
T Consensus 4 l~G~~gV~VaViDtGid~~Hpdl~g~~~------------------------------~~~~~~~~----------~~~~ 43 (282)
T 3zxy_A 4 LKGDHNIRVAILDGPVDIAHPCFQGADL------------------------------TVLPTLAP----------TAAR 43 (282)
T ss_dssp CCCCTTSEEEEEESCCCTTSGGGTTCEE------------------------------EECCCSSC----------CCCC
T ss_pred CcCCCCCEEEEEcCCCCCCChhHCCCee------------------------------ecCcCCCC----------CCCC
Confidence 678 699999999999999999997543 00111100 0111
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDGVDIISLSI 341 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~-~~~~~i~~ai~~a~~~g~~VIN~S~ 341 (858)
...|.+||||||||||+|+.+. .+.||||+|+|+.+|++.+..+ ....+++++|+||++++++||||||
T Consensus 44 ~d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~ 113 (282)
T 3zxy_A 44 SDGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISG 113 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccC
Confidence 2234578999999999997532 3579999999999999865333 6778899999999999999999999
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeec
Q 003005 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (858)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~ 421 (858)
|..... ......++.+++.+.++|+++|+||||+|......|+..+++|+|||++.+
T Consensus 114 G~~~~~---~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 170 (282)
T 3zxy_A 114 GELTDF---GEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH-------------------- 170 (282)
T ss_dssp CEEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT--------------------
T ss_pred cccccc---ccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC--------------------
Confidence 964322 223457888999999999999999999999888888999999999986422
Q ss_pred CCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEE
Q 003005 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (858)
Q Consensus 422 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 501 (858)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccC
Q 003005 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (858)
Q Consensus 502 ~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 581 (858)
+.++.||+||
T Consensus 171 ----------------------------------------------------------------------~~~~~~S~~~ 180 (282)
T 3zxy_A 171 ----------------------------------------------------------------------GHPLDFSNWG 180 (282)
T ss_dssp ----------------------------------------------------------------------SCBCSSSCCC
T ss_pred ----------------------------------------------------------------------CccccccCCC
Confidence 2367789998
Q ss_pred CCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhC----CCCCHHHH
Q 003005 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF----PSFSPSAI 657 (858)
Q Consensus 582 Pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~----P~lsp~~i 657 (858)
+. +.||||+|||.+|+++. +++.|..++|||||||||||++|||+|++ |.++|+||
T Consensus 181 ~~----------~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~v 240 (282)
T 3zxy_A 181 ST----------YEQQGILAPGEDILGAK----------PGGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKV 240 (282)
T ss_dssp HH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CC----------ccccceeccCcceeeec----------CCCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHH
Confidence 75 46889999999999998 56689999999999999999999999875 78999999
Q ss_pred HHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 658 ASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 658 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
|++|++||++++... +.....+|+|+||+.+|++
T Consensus 241 k~~L~~tA~~~~~~~-----------------~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 241 RQLLLQSALPCDDDA-----------------PEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHCBCC------------------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHhhCeeCCCCC-----------------CCccCceeeeEeCHHHHHH
Confidence 999999998764321 2334579999999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=441.44 Aligned_cols=263 Identities=29% Similarity=0.407 Sum_probs=212.4
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.++ +..+++|..+..
T Consensus 33 aw~~----~~~G~gv~VaViDtGid~~Hp~l~~~------------------------------~~~~~~~~~~~~---- 74 (327)
T 2x8j_A 33 VWRA----SAKGAGQIIGVIDTGCQVDHPDLAER------------------------------IIGGVNLTTDYG---- 74 (327)
T ss_dssp HHHH----HGGGTTCEEEEEESCCCTTCTTTGGG------------------------------EEEEEECSSGGG----
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCChhHhhc------------------------------ccCCccccCCCC----
Confidence 7776 68999999999999999999999863 333444443210
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH---
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--- 331 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~--- 331 (858)
.+...+.|..||||||||||+|..+ + .++.||||+|+|+.+|+++....+..+++++||+||++
T Consensus 75 ----~~~~~~~d~~gHGT~VAgiia~~~~-~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~ 141 (327)
T 2x8j_A 75 ----GDETNFSDNNGHGTHVAGTVAAAET-G--------SGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRG 141 (327)
T ss_dssp ----GCTTCCCCSSSHHHHHHHHHHCCCC-S--------SBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCC
T ss_pred ----CCCCCCCCCCCchHHHHHHHhccCC-C--------CCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcc
Confidence 0112346889999999999999742 1 23579999999999999987555788999999999999
Q ss_pred ---CCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCC-----CCCCCCCCCceEEEeecccCce
Q 003005 332 ---DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS-----PKSMSSFSPWIFTVGAASHDRI 403 (858)
Q Consensus 332 ---~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-----~~~~~~~~p~vitVgA~~~~~~ 403 (858)
.+++|||||||.... ...+..+++.+.++|++||+||||+|.. ...+|+..+++|+|||++.+
T Consensus 142 ~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~-- 212 (327)
T 2x8j_A 142 PKGEQMRIITMSLGGPTD-------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD-- 212 (327)
T ss_dssp TTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT--
T ss_pred cccCCceEEEECCCcCCC-------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC--
Confidence 899999999997532 3578889999999999999999999975 24567888999999986422
Q ss_pred eeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcch
Q 003005 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST 483 (858)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 483 (858)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccc
Q 003005 484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL 563 (858)
Q Consensus 484 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 563 (858)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHH
Q 003005 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAA 643 (858)
Q Consensus 564 ~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aA 643 (858)
+.++.||++||.+ ||+|||++|++++ .++.|..++|||||||||||++|
T Consensus 213 --------~~~~~fS~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aA 261 (327)
T 2x8j_A 213 --------LRLSDFTNTNEEI-------------DIVAPGVGIKSTY----------LDSGYAELSGTAMAAPHVAGALA 261 (327)
T ss_dssp --------CCBSCC---CCCC-------------SEEEECSSEEEEC----------STTCEEEEESGGGTHHHHHHHHH
T ss_pred --------CCCCCccCCCCCc-------------eEecCcCceEeec----------CCCCEEeecCHHHHHHHHHHHHH
Confidence 2368899999855 9999999999998 45689999999999999999999
Q ss_pred HHHHh-----CCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 644 LIKQK-----FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 644 Ll~q~-----~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
||+|+ +|.+++.+||++|++||+++.. ++..+|+|+||+.+|++.
T Consensus 262 ll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~---------------------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 262 LIINLAEDAFKRSLSETEIYAQLVRRATPIGF---------------------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS---------------------CHHHHTTCEECTTHHHHH
T ss_pred HHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC---------------------CCCceeeeEECHHHHHHh
Confidence 99999 9999999999999999997632 235799999999999863
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=440.87 Aligned_cols=277 Identities=23% Similarity=0.321 Sum_probs=220.0
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecch
Q 003005 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247 (858)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~ 247 (858)
+.|+++ +|+. ...++||+|||||||||++||+|.++.. ....++..
T Consensus 7 i~G~~~-aW~~----~~G~~gV~VaViDtGid~~Hpdl~g~~~-----------------------------~~~~~~~~ 52 (306)
T 4h6w_A 7 IPGLKK-LWSE----TRGDPKICVAVLDGIVDQNHPCFIGADL-----------------------------TRLPSLVS 52 (306)
T ss_dssp CTTHHH-HHHH----CSCCTTCEEEEESSCCCTTSGGGTTCEE-----------------------------EECC----
T ss_pred CcCHHH-HHhh----hCCCCCCEEEEEcCCCCCCChhHcCCcc-----------------------------cCCCcccC
Confidence 345655 8987 3445899999999999999999997543 11112221
Q ss_pred hhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC-CCCHHHHHHHH
Q 003005 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAI 326 (858)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~~i~~ai 326 (858)
+ +.....|.++|||||||||+|+.+ +.+.||||+|+|+.+|++.+.. .....+++++|
T Consensus 53 ~-----------~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai 111 (306)
T 4h6w_A 53 G-----------EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAI 111 (306)
T ss_dssp -----------------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHH
T ss_pred C-----------CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHH
Confidence 1 112234678999999999999753 2457999999999999986533 36778899999
Q ss_pred HHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeee
Q 003005 327 DQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTN 406 (858)
Q Consensus 327 ~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~ 406 (858)
+||++++++|||+|||..... ......++.+++.+.++|+++|+||||+|.....+|+..+++|+|||++..
T Consensus 112 ~~a~~~g~~vi~~s~g~~~~~---~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~----- 183 (306)
T 4h6w_A 112 EQAVNNGANIINVSAGQLTDA---GEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ----- 183 (306)
T ss_dssp HHHHHTTCSEEEECCCEEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT-----
T ss_pred HHhhcccceeeeccccccccC---CCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC-----
Confidence 999999999999999964322 223457888999999999999999999999888888999999999986422
Q ss_pred EEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHH
Q 003005 407 SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQ 486 (858)
Q Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 486 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccc
Q 003005 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKAN 566 (858)
Q Consensus 487 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 566 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHH
Q 003005 567 FSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646 (858)
Q Consensus 567 ~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 646 (858)
+.++.||++|+. ..||||+|||.+|+|+. +++.|..++|||||||||||++|||+
T Consensus 184 -----~~~~~~s~~g~~----------~~~~di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~~All~ 238 (306)
T 4h6w_A 184 -----GKPVDFSNWGDA----------YQKQGILAPGKDILGAK----------PNGGTIRLSGTSFATPIVSGVAALLL 238 (306)
T ss_dssp -----SCBCSSSCBCHH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHH
T ss_pred -----CCccccccccCC----------cCcceeecCCcCccccc----------CCCceeccCCCcchhHHHHHHHHHHH
Confidence 235678899874 46899999999999998 45689999999999999999999998
Q ss_pred H----hCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 647 Q----KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 647 q----~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
+ ++|.|+|+|||++|++||+++...+. .....||+|+||+.+|++.
T Consensus 239 s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~-----------------~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 239 SLQIKRGEKPDPQKVKNALLASATPCNPKDT-----------------DDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTCBCCCTTTC-----------------SCGGGGTTCBCCHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHhhCccCCCCCC-----------------CCCCCcceeecCHHHHHHH
Confidence 6 46999999999999999998765432 2234799999999999963
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=430.19 Aligned_cols=285 Identities=30% Similarity=0.463 Sum_probs=221.2
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.++. ...++|....
T Consensus 18 ~w~~----~~~G~gv~VaViDtGvd~~H~~l~~~~------------------------------~~~~~~~~~~----- 58 (310)
T 2ixt_A 18 TLTS----TTGGSGINIAVLDTGVNTSHPDLVNNV------------------------------EQCKDFTGAT----- 58 (310)
T ss_dssp TCCC----CCCCTTCEEEEEESCCCTTCTTTTTTE------------------------------EEEEESSSSS-----
T ss_pred hhhc----cCCCCCcEEEEEecCCCCCCHHHhhcc------------------------------cccccccCCC-----
Confidence 6665 789999999999999999999999742 2233333210
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
........|..||||||||||+|.... +...+.||||+|+|+.+|++.....+..++++++|+|++++++
T Consensus 59 ---~~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 128 (310)
T 2ixt_A 59 ---TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQAT 128 (310)
T ss_dssp ---SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhh
Confidence 001123457889999999999987421 1134679999999999999987555788999999999999887
Q ss_pred -----CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCC--CCCCCCCCCceEEEeecccCceeeeE
Q 003005 335 -----DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS--PKSMSSFSPWIFTVGAASHDRIYTNS 407 (858)
Q Consensus 335 -----~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~vitVgA~~~~~~~~~~ 407 (858)
+|||||||.... ...+..+++.+.++|++||+||||+|.. ...+|+..+++|+|||++....
T Consensus 129 ~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~---- 197 (310)
T 2ixt_A 129 ATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ---- 197 (310)
T ss_dssp HHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE----
T ss_pred ccCCCeEEEEcCCCCCC-------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc----
Confidence 999999997532 3578889999999999999999999976 4567888999999999652100
Q ss_pred EEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHH
Q 003005 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (858)
Q Consensus 408 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~ 487 (858)
.|
T Consensus 198 ---------------------------------------------------------~g--------------------- 199 (310)
T 2ixt_A 198 ---------------------------------------------------------NG--------------------- 199 (310)
T ss_dssp ---------------------------------------------------------TT---------------------
T ss_pred ---------------------------------------------------------CC---------------------
Confidence 00
Q ss_pred HHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccccccc
Q 003005 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (858)
Q Consensus 488 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 567 (858)
T Consensus 200 -------------------------------------------------------------------------------- 199 (310)
T 2ixt_A 200 -------------------------------------------------------------------------------- 199 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH
Q 003005 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ 647 (858)
Q Consensus 568 ~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q 647 (858)
...++.||++||...... -..++.||||+|||.+|++++ .++.|..++|||||||||||++|||+|
T Consensus 200 ---~~~~~~~S~~G~~~~~g~-~~~~~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~ 265 (310)
T 2ixt_A 200 ---TYRVADYSSRGYISTAGD-YVIQEGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLAAKIWA 265 (310)
T ss_dssp ---EEEECTTSCCCCTTTTTS-SSCCTTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHH
T ss_pred ---CeeeccccCCCCccCCcc-ccccCCCeeEECCCCCEeeec----------CCCCEEeeccHHHHHHHHHHHHHHHHH
Confidence 003678999999542100 001345999999999999998 456899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccc
Q 003005 648 KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703 (858)
Q Consensus 648 ~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~ 703 (858)
++|+|+++|||++|++||++++..+. ....+.++..+|||++|+
T Consensus 266 ~~p~lt~~~v~~~L~~tA~~~~~~~~------------~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 266 ENPSLSNTQLRSNLQERAKSVDIKGG------------YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp HSTTCCHHHHHHHHHHHHHTSCCCBS------------TTCCSSSBTTTBTCBCCC
T ss_pred hCCCCCHHHHHHHHHhhCcccCCCCC------------cccccCCccccccceeec
Confidence 99999999999999999998764332 013455678999999996
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=434.37 Aligned_cols=268 Identities=26% Similarity=0.428 Sum_probs=217.8
Q ss_pred cCCCcccccccCCCCCCCC--CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecc
Q 003005 169 LGLPQGAWIQEGGYETAGE--GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFA 246 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~ 246 (858)
++++. +|.. + +|+ ||+|||||||||++||+|.++. ...++|.
T Consensus 15 i~~~~-aw~~----~-~G~~~gv~VaViDtGid~~Hp~l~~~~------------------------------~~~~~~~ 58 (320)
T 2z30_A 15 VKAPS-VWSI----T-DGSVSVIQVAVLDTGVDYDHPDLAANI------------------------------AWCVSTL 58 (320)
T ss_dssp TTCGG-GTTT----C-CSCCTTCEEEEEESCBCTTCTTTGGGE------------------------------EEEEECG
T ss_pred cChHH-HHHh----c-CCCcCCeEEEEECCCCCCCChhHhccc------------------------------ccCcccc
Confidence 44444 7775 3 899 9999999999999999999742 2333343
Q ss_pred hhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHH
Q 003005 247 ASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI 326 (858)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai 326 (858)
.+.. . .+.....|..||||||||||+|..+ + .++.||||+|+|+.+|+++....+..++++++|
T Consensus 59 ~~~~-----~--~~~~~~~d~~gHGT~vAgiia~~~n-~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai 122 (320)
T 2z30_A 59 RGKV-----S--TKLRDCADQNGHGTHVIGTIAALNN-D--------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGI 122 (320)
T ss_dssp GGCC-----B--CCHHHHBCSSSHHHHHHHHHHCCSS-S--------BSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHH
T ss_pred CCcc-----C--CCCCCCCCCCCCHHHHHHHHHcccC-C--------CceEeeCCCCEEEEEEeeCCCCCccHHHHHHHH
Confidence 3210 0 0001235788999999999998732 1 235799999999999999875557889999999
Q ss_pred HHHHHC--------------------CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Q 003005 327 DQAAQD--------------------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS 386 (858)
Q Consensus 327 ~~a~~~--------------------g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~ 386 (858)
+||+++ +++|||||||.... ...+..+++++.++|++||+||||+|.....+|
T Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~P 195 (320)
T 2z30_A 123 EQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP 195 (320)
T ss_dssp HHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBT
T ss_pred HHHHhCcccccccccccccccccccCCceEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCc
Confidence 999987 99999999997542 357888899999999999999999999888889
Q ss_pred CCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccc
Q 003005 387 SFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQG 466 (858)
Q Consensus 387 ~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~G 466 (858)
+..|++|+|||++.+
T Consensus 196 a~~~~vi~Vga~~~~----------------------------------------------------------------- 210 (320)
T 2z30_A 196 AAYPEVIAVGAIDSN----------------------------------------------------------------- 210 (320)
T ss_dssp TTSTTEEEEEEECTT-----------------------------------------------------------------
T ss_pred ccCCCeEEEEeeCCC-----------------------------------------------------------------
Confidence 999999999996422
Q ss_pred eEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccc
Q 003005 467 NLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEV 546 (858)
Q Consensus 467 kivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~ 546 (858)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccce
Q 003005 547 TKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFA 626 (858)
Q Consensus 547 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~ 626 (858)
+.++.||++|| +|+|||.+|++++ +++.|.
T Consensus 211 -------------------------~~~~~~S~~g~---------------~v~APG~~i~s~~----------~~~~~~ 240 (320)
T 2z30_A 211 -------------------------DNIASFSNRQP---------------EVSAPGVDILSTY----------PDDSYE 240 (320)
T ss_dssp -------------------------SCBCTTSCSSC---------------SEEEECSSEEEEE----------TTTEEE
T ss_pred -------------------------CCcCcccCCCC---------------CEEeCCCCeEEec----------cCCCeE
Confidence 23678999986 6799999999998 456899
Q ss_pred eecccCchhHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCC
Q 003005 627 MMSGTSMAAPHIAGLAALIKQKF-------------PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATP 693 (858)
Q Consensus 627 ~~sGTSMAaP~VAG~aALl~q~~-------------P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 693 (858)
.++|||||||||||++|||+|++ |+|++++||++|++||+++...+ .+
T Consensus 241 ~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g-------------------~~ 301 (320)
T 2z30_A 241 TLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-------------------WD 301 (320)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSS-------------------SB
T ss_pred eccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCCC-------------------CC
Confidence 99999999999999999999999 99999999999999999875433 24
Q ss_pred CccccccccccccCCC
Q 003005 694 FDMGSGFVNATASLDP 709 (858)
Q Consensus 694 ~~~G~G~vd~~~A~~~ 709 (858)
..||+|+||+.+|++.
T Consensus 302 ~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 302 ADYGYGVVRAALAVQA 317 (320)
T ss_dssp TTTBTCBCCHHHHHHH
T ss_pred CCcCCceeCHHHHHHH
Confidence 5799999999999863
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=444.36 Aligned_cols=295 Identities=27% Similarity=0.369 Sum_probs=225.4
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEeccCcCC------CCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeee
Q 003005 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDP------THPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241 (858)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g 241 (858)
.++++. +|... +++|+||+|||||||||. .||+|.++ +..
T Consensus 7 ~i~~~~-~~~~~---g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~------------------------------i~~ 52 (434)
T 1wmd_A 7 IVKADV-AQSSY---GLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK------------------------------ITA 52 (434)
T ss_dssp HTTHHH-HHHHH---CCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC------------------------------EEE
T ss_pred hhCchh-hhhcc---CCCCcccEEEEEecCcCCCCCCcccCcccCCC------------------------------Eee
Confidence 455554 77632 689999999999999999 79999864 223
Q ss_pred eeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCC--CH
Q 003005 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FA 319 (858)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~--~~ 319 (858)
.++|.+. ..+.|..||||||||||+|+.. .+.||||+|+|+.+|+++..... ..
T Consensus 53 ~~~~~~~-------------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~ 108 (434)
T 1wmd_A 53 LYALGRT-------------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLP 108 (434)
T ss_dssp EEETTTT-------------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSC
T ss_pred eccccCC-------------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCcccccc
Confidence 3344321 3456789999999999998631 24699999999999999763322 45
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHH-HhCCCEEEEecCCCCCCC--CCCCCCCCceEEEe
Q 003005 320 ADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVG 396 (858)
Q Consensus 320 ~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVg 396 (858)
+++.++|+|++++|++|||||||..... .......+++.+ .++|++||+||||+|... ...|+.++++|+||
T Consensus 109 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~-----~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVg 183 (434)
T 1wmd_A 109 SNLQTLFSQAYSAGARIHTNSWGAAVNG-----AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVG 183 (434)
T ss_dssp SSHHHHHHHHHHTTCSEEEECCCBCCTT-----CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCcCC-----cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEe
Confidence 6799999999999999999999986421 124556666655 689999999999999864 45678899999999
Q ss_pred ecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccc
Q 003005 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR 476 (858)
Q Consensus 397 A~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~ 476 (858)
|++..+...
T Consensus 184 a~~~~~~~~----------------------------------------------------------------------- 192 (434)
T 1wmd_A 184 ATENLRPSF----------------------------------------------------------------------- 192 (434)
T ss_dssp EECCSCGGG-----------------------------------------------------------------------
T ss_pred cccccCccc-----------------------------------------------------------------------
Confidence 976431100
Q ss_pred cccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeee
Q 003005 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (858)
Q Consensus 477 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (858)
+.
T Consensus 193 ---~~--------------------------------------------------------------------------- 194 (434)
T 1wmd_A 193 ---GS--------------------------------------------------------------------------- 194 (434)
T ss_dssp ---CG---------------------------------------------------------------------------
T ss_pred ---Cc---------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCc--cccCccceeecccCch
Q 003005 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSV--EFQGESFAMMSGTSMA 634 (858)
Q Consensus 557 ~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSMA 634 (858)
+....+.++.||++||+.+ +++||||+|||++|+++.+....... ...++.|..++|||||
T Consensus 195 ----------~~~~~~~~a~fS~~G~~~~-------g~~kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~A 257 (434)
T 1wmd_A 195 ----------YADNINHVAQFSSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMA 257 (434)
T ss_dssp ----------GGSCTTSBCTTSCCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHH
T ss_pred ----------ccCCCCccccccCCCCCCC-------CCCCceEEcCCCCeEecCCCCCCCcccccCCCCceEeecchhHH
Confidence 0011246899999999987 89999999999999999864321100 0124689999999999
Q ss_pred hHHHHHHHHHHHHhCCCC-----CHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 635 APHIAGLAALIKQKFPSF-----SPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 635 aP~VAG~aALl~q~~P~l-----sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
||||||++|||+|++|++ ++++||++|++||+++.. ..+++.||||++|+.+|++.
T Consensus 258 aP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-------------------~~~~~~~G~G~vd~~~a~~~ 318 (434)
T 1wmd_A 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-------------------GYPNGNQGWGRVTLDKSLNV 318 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------------------CSSCTTTTTCBCCHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-------------------CCCCccCCcCeEeHHHhccc
Confidence 999999999999999875 899999999999987532 13467899999999999975
Q ss_pred C
Q 003005 710 G 710 (858)
Q Consensus 710 ~ 710 (858)
.
T Consensus 319 ~ 319 (434)
T 1wmd_A 319 A 319 (434)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=433.30 Aligned_cols=273 Identities=18% Similarity=0.164 Sum_probs=216.0
Q ss_pred cCCCcccccccCCCCCCCC--CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecc
Q 003005 169 LGLPQGAWIQEGGYETAGE--GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFA 246 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~ 246 (858)
++++. +|.. ++|+ ||+||||||||| +||+|.++. ...++|.
T Consensus 30 i~~~~-aw~~-----~~G~~~gv~VaViDsGid-~Hp~l~~~~------------------------------~~~~~~~ 72 (347)
T 2iy9_A 30 IGLTE-TTMS-----LTDKNTPVVVSVVDSGVA-FIGGLSDSE------------------------------FAKFSFT 72 (347)
T ss_dssp HTCCH-HHHH-----TSCTTSCCEEEEEESCCC-CCGGGTTCE------------------------------EEEEECB
T ss_pred CChHH-HHHH-----hcCCCCCCEEEEEcCCCc-CChhhhcCc------------------------------ccCCccc
Confidence 44444 7876 6899 999999999999 999998742 2333443
Q ss_pred hhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHH
Q 003005 247 ASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI 326 (858)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai 326 (858)
.+. ...+...+.|..||||||||||+|+. ++.||||+|+|+.+|+++..... ++++||
T Consensus 73 ~~~-------~~~~~~~~~d~~gHGT~vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~~~~---~~~~ai 130 (347)
T 2iy9_A 73 QDG-------SPFPVKKSEALYIHGTAMASLIASRY------------GIYGVYPHALISSRRVIPDGVQD---SWIRAI 130 (347)
T ss_dssp TTC-------CSSCCSSSHHHHHHHHHHHHHHHCSS------------SSCCSSTTCEEEEEECCSSBCTT---HHHHHH
T ss_pred CCC-------CCCCCCCCCCCCCcHHHHHHHHhccc------------CCcccCCCCEEEEEEEecCCCHH---HHHHHH
Confidence 220 00011234567899999999999871 24799999999999999763322 999999
Q ss_pred HHHHHC------CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCC-------CCCCCCCCC---
Q 003005 327 DQAAQD------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS-------PKSMSSFSP--- 390 (858)
Q Consensus 327 ~~a~~~------g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p--- 390 (858)
+||+++ +++|||||||..... .....+..+++.+.++|++||+||||+|.. ...+|+..+
T Consensus 131 ~~a~~~~~~~~~~~~Vin~S~G~~~~~----~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~ 206 (347)
T 2iy9_A 131 ESIMSNVFLAPGEEKIINISGGQKGVA----SASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVS 206 (347)
T ss_dssp HHHHTCTTSCTTEEEEEEESSCBCCC-----CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCS
T ss_pred HHHHhhhhcccCCceEEEeccccCCCC----CcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCcccc
Confidence 999999 999999999975321 234678899999999999999999999985 456778888
Q ss_pred -------ceEEEeeccc--CceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCcc
Q 003005 391 -------WIFTVGAASH--DRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQ 461 (858)
Q Consensus 391 -------~vitVgA~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 461 (858)
++|+|||++. +...
T Consensus 207 ~~~~~~~~vi~Vga~~~~~~g~~--------------------------------------------------------- 229 (347)
T 2iy9_A 207 SVNKKQDPVIRVAALAQYRKGET--------------------------------------------------------- 229 (347)
T ss_dssp HHHHHTCCEEEEEEECCCCTTSC---------------------------------------------------------
T ss_pred ccccccCCEEEEEEcccCCCCce---------------------------------------------------------
Confidence 9999999764 1100
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhccc
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSL 541 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~ 541 (858)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCcccc
Q 003005 542 ERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQ 621 (858)
Q Consensus 542 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~ 621 (858)
....+.++.||++||+ ||||+|||++|+++. +
T Consensus 230 --------------------------~~~~~~~~~fS~~G~~------------~~di~APG~~i~s~~----------~ 261 (347)
T 2iy9_A 230 --------------------------PVLHGGGITGSRFGNN------------WVDIAAPGQNITFLR----------P 261 (347)
T ss_dssp --------------------------CCBCCCSSSCBCBCTT------------TCSEEEECSSEEEEC----------T
T ss_pred --------------------------ecccCCCCCCCCCCCC------------CCEEEeCCCCeEeec----------C
Confidence 0001236789999983 459999999999998 4
Q ss_pred CccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 003005 622 GESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFV 701 (858)
Q Consensus 622 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~v 701 (858)
++.|..++|||||||||||++|||+|++|+|+++|||++|++||+++...+ +..+|+|+|
T Consensus 262 ~~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~--------------------~~~~G~G~l 321 (347)
T 2iy9_A 262 DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV--------------------DKVTEGRVL 321 (347)
T ss_dssp TSCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT--------------------TTSGGGEEC
T ss_pred CCCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC--------------------CccccCCEe
Confidence 568999999999999999999999999999999999999999999875432 247999999
Q ss_pred cccccCCC
Q 003005 702 NATASLDP 709 (858)
Q Consensus 702 d~~~A~~~ 709 (858)
|+.+|++.
T Consensus 322 d~~~A~~~ 329 (347)
T 2iy9_A 322 NAEKAISM 329 (347)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999964
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-48 Score=427.13 Aligned_cols=304 Identities=23% Similarity=0.344 Sum_probs=219.9
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +++|+||+||||||||+ +||+|.++... ...+........+.. +.... .....++.+.
T Consensus 19 i~~~~-aw~~----g~~G~gV~VaViDtGi~-~hp~l~~~~~~-----~~~~~~~~~~~~d~~-~~~~~-~~~~~~~~~~ 85 (340)
T 3lpc_A 19 VKADK-VWDM----GFTGQNVVVAVVDTGIL-HHRDLNANVLP-----GYDFISNSQISLDGD-GRDAD-PFDEGDWFDN 85 (340)
T ss_dssp CCHHH-HHHH----TCSCTTCEEEEEESCBC-CCTTTGGGBCC-----CEECCCCHHHHCSSS-SSBSC-CBCCCCCBCT
T ss_pred CCHHH-HHHh----cCCCCCeEEEEEcCCCC-CChhhhccccc-----CccccCCccccccCC-CccCC-cccccccccc
Confidence 34434 7876 78999999999999998 99999976440 001100000000000 00000 0000000000
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
.. ......+.....|..||||||||||+|...+. .++.||||+|+|+.+|++.. .++..++++++|+|
T Consensus 86 ~~---~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~~v~~~-~~~~~~~~~~ai~~ 153 (340)
T 3lpc_A 86 WA---CGGRPDPRKERSDSSWHGSHVAGTIAAVTNNR--------IGVAGVAYGAKVVPVRALGR-CGGYDSDISDGLYW 153 (340)
T ss_dssp TT---TSCTTCGGGSCBCCCCHHHHHHHHHHCCCSSS--------SSCCCTTTTSEEEEEECCBT-TBCCHHHHHHHHHH
T ss_pred cc---ccCCCCcccCCCCCCCCHHHHHHHHHccCCCC--------CcceeecCCCEEEEEEEecC-CCCcHHHHHHHHHH
Confidence 00 00001112234688999999999999975432 23579999999999999987 44788999999999
Q ss_pred HHH----------CCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCCCCceEEEee
Q 003005 329 AAQ----------DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGA 397 (858)
Q Consensus 329 a~~----------~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA 397 (858)
+++ .+++|||||||.... ....+..+++.+.++|++||+||||+|.... .+|+..+++|+|||
T Consensus 154 a~~~~~~~~~~~~~~~~Vin~S~G~~~~------~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga 227 (340)
T 3lpc_A 154 AAGGRIAGIPENRNPAKVINMSLGSDGQ------CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGA 227 (340)
T ss_dssp HHTCCCTTSCCCSSCCSEEEECCCEESC------CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEE
T ss_pred HhcccccccccccCCCeEEEeCcCCCCC------cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEec
Confidence 998 899999999997432 2356788899999999999999999998653 46788899999998
Q ss_pred cccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEecccc
Q 003005 398 ASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRF 477 (858)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~ 477 (858)
++.+
T Consensus 228 ~~~~---------------------------------------------------------------------------- 231 (340)
T 3lpc_A 228 TTSR---------------------------------------------------------------------------- 231 (340)
T ss_dssp ECTT----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 6422
Q ss_pred ccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeE
Q 003005 478 VLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVA 557 (858)
Q Consensus 478 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (858)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHH
Q 003005 558 CILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPH 637 (858)
Q Consensus 558 ~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~ 637 (858)
+.++.||++||.+ ||+|||.+|+++.+...... ..+.|..++||||||||
T Consensus 232 --------------~~~~~~S~~g~~~-------------di~ApG~~i~s~~~~~~~~~---~~~~~~~~sGTS~AaP~ 281 (340)
T 3lpc_A 232 --------------GIRASFSNYGVDV-------------DLAAPGQDILSTVDSGTRRP---VSDAYSFMAGTSMATPH 281 (340)
T ss_dssp --------------SSBCTTCCBSTTC-------------CEEEECSSEEEEEESCSSSC---CSEEEEEECSHHHHHHH
T ss_pred --------------CCcCCCCCCCCCc-------------eEEecCCCeecccCCCCcCC---CCCcceecccHhHHHHH
Confidence 2368899999754 99999999999986543211 23469999999999999
Q ss_pred HHHHHHHHHHh-C---CCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 638 IAGLAALIKQK-F---PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 638 VAG~aALl~q~-~---P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
|||++|||+|+ + |.+++++||++|++||+++.. .++..+|+|+||+.+|++.
T Consensus 282 vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~--------------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG--------------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS--------------------CCSSCCCSSBCCHHHHHHH
T ss_pred HHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC--------------------CCCCCcccceecHHHHHHH
Confidence 99999999998 5 999999999999999987642 1245899999999999864
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=458.50 Aligned_cols=361 Identities=21% Similarity=0.288 Sum_probs=250.8
Q ss_pred CCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCC--CHHHHHHHHHHHHH-----CCCCEE
Q 003005 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQ-----DGVDII 337 (858)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~--~~~~i~~ai~~a~~-----~g~~VI 337 (858)
.|++||||||||||+|.. ++ .++.||||+|+|+.+|+++...+. ...+++.+|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478899999999999985 21 346799999999999999764332 45677777777777 799999
Q ss_pred EEccCCCCCCCCCCccCCHHHHHHHHHH-hCCCEEEEecCCCCCCCC--CCCCC--CCceEEEeecccCceeeeEEEeCC
Q 003005 338 SLSITPNRRPPGIATFFNPIDMALLSAA-KAGIFVVQAAGNTGPSPK--SMSSF--SPWIFTVGAASHDRIYTNSIILGN 412 (858)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~--~~~~~--~p~vitVgA~~~~~~~~~~~~~~~ 412 (858)
|||||...... ..+.+..+++++. ++|++||+||||+|.... ..|+. ++++|+|||++.+........
T Consensus 338 NmS~G~~~~~~----~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys--- 410 (1354)
T 3lxu_X 338 NMSYGEHANWS----NSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYA--- 410 (1354)
T ss_dssp EECCCCCCSCS----SCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC------
T ss_pred EcCCccCCCCC----ccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccccc---
Confidence 99999865322 2357788888885 899999999999998643 35664 899999999864421100000
Q ss_pred ceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHH
Q 003005 413 SLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAK 492 (858)
Q Consensus 413 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~ 492 (858)
.
T Consensus 411 -------------------------------------~------------------------------------------ 411 (1354)
T 3lxu_X 411 -------------------------------------M------------------------------------------ 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred hCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCC
Q 003005 493 NLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAP 572 (858)
Q Consensus 493 ~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 572 (858)
.....+
T Consensus 412 --------------------------------------------------------------------------~~~~~g 417 (1354)
T 3lxu_X 412 --------------------------------------------------------------------------REKLPG 417 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------ccCCCC
Confidence 000114
Q ss_pred ccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH----h
Q 003005 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----K 648 (858)
Q Consensus 573 ~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~ 648 (858)
.++.|||+||+.+ +++||||+|||++|+++... .++.|..++|||||||||||++|||++ +
T Consensus 418 ~~asFSS~GPt~d-------g~~KpDIaAPG~~I~St~~~--------~~~~y~~~SGTSmAAP~VAGvAALLLSalkq~ 482 (1354)
T 3lxu_X 418 NVYTWTSRDPCID-------GGQGVTVCAPGGAIASVPQF--------TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQ 482 (1354)
T ss_dssp CCCCCCCCSCCSS-------SSCCEEEEEEC-----------------------CCCCGGGCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCcc-------CCCcceEEecCceEEEeecC--------CCCceecCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 5899999999987 79999999999999997532 245899999999999999999999986 8
Q ss_pred CCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeCCcchhhhhccccC
Q 003005 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGIN 728 (858)
Q Consensus 649 ~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~~v~~~~~~~~~~~~~~~~ 728 (858)
+|+|++++||++|++||+++.. .+++.||+|+||+.+|++....++....+++.|.|..+
T Consensus 483 ~P~LTp~qVk~lL~~TA~~~~~--------------------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~ 542 (1354)
T 3lxu_X 483 NIEYSPYSIKRAISVTATKLGY--------------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVG 542 (1354)
T ss_dssp TCCCCHHHHHHHHHTTSBCCTT--------------------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCccCCC--------------------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEec
Confidence 9999999999999999998643 22467999999999999987777777778899998776
Q ss_pred C-CcceeeeccCcccccCCCCCCCCCCCCCeEEEeecCcceEEEE----EEEE---cCC--CceEEEEeec-CCcceEEE
Q 003005 729 G-SSPVVLNYTGQNCWAYNSTISGADLNLPSITIARLNQSRTVQR----TLTN---IAG--NETYSVGWSA-PYGVSMKV 797 (858)
Q Consensus 729 ~-~~~~i~~~~~~~~~~~~~~~~~~~~n~~si~~~~~~~~~~~~~----tv~n---~~~--~~ty~~~~~~-~~~~~v~~ 797 (858)
. +...|..... . . ....++++ ++.| ... ...|.+.+.- ...-.|++
T Consensus 543 ~~~~rgIylR~~------------~-~----------~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~~wv~~ 599 (1354)
T 3lxu_X 543 NNADKGIHLRQG------------V-Q----------RNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQC 599 (1354)
T ss_dssp TTTBSSEEECSS------------C-C----------CSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESSTTEEE
T ss_pred CCCCCceEEecc------------c-c----------CCceEEEEEEeeeecCcccCChhhccceEEEEEEecCCCceec
Confidence 5 3444433211 0 0 01122222 2311 111 2222222111 11124454
Q ss_pred eecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEe----CCccEEEEeEEEEEEeeccc
Q 003005 798 SPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFG----NQGHIVNIPLSVVARLSYNA 854 (858)
Q Consensus 798 ~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~----~~~~~l~iP~~~~~~~~~~~ 854 (858)
|..+.| .++.++|.|.+++.......+++.|.... ..++..+||+.+......+.
T Consensus 600 -p~~l~l-~~~~r~~~v~vDp~~L~~G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P~~~~~ 658 (1354)
T 3lxu_X 600 -GAFLDL-SYGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIPVTVVQPHVLES 658 (1354)
T ss_dssp -CSCEEC-TTSCEEEEEEECGGGCCSEEEEEEEEEEESSCTTSCCSEEEEEEEEECBCCCC
T ss_pred -ccceee-cCCCceEEEEECCCCCCCcceeEEEEEEEcCCcccCceEEeeEEEEeeeeccC
Confidence 777877 79999999999988887788889998764 24689999999998865443
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=402.73 Aligned_cols=234 Identities=29% Similarity=0.446 Sum_probs=199.6
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.++ +...++|.+.
T Consensus 21 aw~~----~~~G~gv~VaViDtGvd~~h~~l~~~------------------------------~~~~~~~~~~------ 60 (284)
T 1sh7_A 21 NYNA----NFDGFGVTAYVIDTGVNNNHEEFGGR------------------------------SVSGYDFVDN------ 60 (284)
T ss_dssp BCCC----SCCCTTCEEEEEESCCCTTCTTTTTC------------------------------EEEEEETTTT------
T ss_pred hhhc----CCCCCCCEEEEEcCCCCCCChhHcCC------------------------------ccccccccCC------
Confidence 5665 78999999999999999999999964 2233444432
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC--
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-- 332 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~-- 332 (858)
...+.|..+|||||||||+|+. .||||+|+|+.+|+++....+..++++++|+|++++
T Consensus 61 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~ 120 (284)
T 1sh7_A 61 ------DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNAS 120 (284)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCC
T ss_pred ------CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCC
Confidence 1345688999999999999862 499999999999999875567889999999999984
Q ss_pred CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeC
Q 003005 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (858)
Q Consensus 333 g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 411 (858)
+++|||||||... ...++.+++.+.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 121 ~~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 182 (284)
T 1sh7_A 121 GPSVANMSLGGGQ--------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS---------- 182 (284)
T ss_dssp SSEEEEECCCBSC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT----------
T ss_pred CCcEEEeCCCCCC--------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC----------
Confidence 7999999999752 35788999999999999999999999764 3567889999999986421
Q ss_pred CceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHH
Q 003005 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (858)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 491 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCC
Q 003005 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (858)
Q Consensus 492 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 571 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCC
Q 003005 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (858)
Q Consensus 572 ~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 651 (858)
+.++.||++||.. ||+|||++|++++ .++.|..++|||||||||||++|||+|++|+
T Consensus 183 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 239 (284)
T 1sh7_A 183 DSRSSFSNWGSCV-------------DLFAPGSQIKSAW----------YDGGYKTISGTSMATPHVAGVAALYLQENNG 239 (284)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCcccCCCCcc-------------EEEeccCCeEEec----------CCCCEEEccChHHHHHHHHHHHHHHHHHCCC
Confidence 2368899999875 8999999999998 4558999999999999999999999999999
Q ss_pred CCHHHHHHHHHccccccc
Q 003005 652 FSPSAIASALSTSATLYD 669 (858)
Q Consensus 652 lsp~~ik~~L~~TA~~~~ 669 (858)
|+++|||++|++||++..
T Consensus 240 lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 240 LTPLQLTGLLNSRASENK 257 (284)
T ss_dssp CCHHHHHHHHHHHSEESC
T ss_pred CCHHHHHHHHHhhCccCC
Confidence 999999999999998764
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=400.19 Aligned_cols=225 Identities=30% Similarity=0.461 Sum_probs=193.3
Q ss_pred CCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 003005 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (858)
Q Consensus 184 ~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~ 263 (858)
.+|+||+|||||||||++||+|.++. ...++|. ..
T Consensus 28 ~~G~gv~VaViDsGvd~~H~~l~~~~------------------------------~~~~~~~---------------~~ 62 (279)
T 2pwa_A 28 SAGQGSCVYVIDTGIEASHPEFEGRA------------------------------QMVKTYY---------------YS 62 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTCE------------------------------EEEEESS---------------SC
T ss_pred CCCCCCEEEEEeCCCCCCChhHhCcc------------------------------ccccCCC---------------CC
Confidence 79999999999999999999999642 2223332 12
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC-------CE
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-------DI 336 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-------~V 336 (858)
+.|..+|||||||||+|+. .||||+|+|+.+|+++....+..++++++|+|++++++ +|
T Consensus 63 ~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~V 128 (279)
T 2pwa_A 63 SRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVV 128 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred CCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccE
Confidence 4578899999999999862 59999999999999987555888999999999999887 99
Q ss_pred EEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCCCCceEEEeecccCceeeeEEEeCCceE
Q 003005 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (858)
Q Consensus 337 IN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 415 (858)
||||||.. ..+.+.++++.+.++|++||+||||+|.+.. .+|+..+++|+|||++.+
T Consensus 129 in~S~G~~--------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 186 (279)
T 2pwa_A 129 ASLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY-------------- 186 (279)
T ss_dssp EEECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------
T ss_pred EEecCCCC--------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC--------------
Confidence 99999964 2367889999999999999999999998653 457889999999986422
Q ss_pred EEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCC
Q 003005 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (858)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 495 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccc
Q 003005 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (858)
Q Consensus 496 a~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 575 (858)
+.++
T Consensus 187 ----------------------------------------------------------------------------~~~~ 190 (279)
T 2pwa_A 187 ----------------------------------------------------------------------------DRRS 190 (279)
T ss_dssp ----------------------------------------------------------------------------SBBC
T ss_pred ----------------------------------------------------------------------------CCcC
Confidence 2468
Q ss_pred cccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHH
Q 003005 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655 (858)
Q Consensus 576 ~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~ 655 (858)
.||++||.. ||+|||++|++++ .++.|..++|||||||||||++|||+|+ |+++++
T Consensus 191 ~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~ 246 (279)
T 2pwa_A 191 SFSNYGSVL-------------DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLMTL-GKTTAA 246 (279)
T ss_dssp TTCCBSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTT
T ss_pred CcCCCCCcc-------------eEEEecCCeEEee----------cCCCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHH
Confidence 899999865 8999999999998 4558999999999999999999999999 999999
Q ss_pred HHHHHHHccccccc
Q 003005 656 AIASALSTSATLYD 669 (858)
Q Consensus 656 ~ik~~L~~TA~~~~ 669 (858)
|||++|++||++..
T Consensus 247 ~v~~~L~~tA~~~~ 260 (279)
T 2pwa_A 247 SACRYIADTANKGD 260 (279)
T ss_dssp THHHHHHHHSEESC
T ss_pred HHHHHHHHhCcccc
Confidence 99999999998753
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-46 Score=396.29 Aligned_cols=236 Identities=30% Similarity=0.414 Sum_probs=198.9
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.++. ...++|.++
T Consensus 23 ~~~~----~~~G~gv~VaViDtGid~~Hpdl~~~~------------------------------~~~~d~~~~------ 62 (278)
T 2b6n_A 23 NYHT----DYDGSGVTAFVIDTGVLNTHNEFGGRA------------------------------SSGYDFIDN------ 62 (278)
T ss_dssp EEEC----SCCCTTCEEEEEESCCCTTCGGGTTCE------------------------------EEEEETTTT------
T ss_pred hccc----CCCCCCCEEEEEeCCCCCCChhHhccc------------------------------ccCeecCCC------
Confidence 6765 789999999999999999999998642 233444432
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH--C
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--D 332 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~--~ 332 (858)
...+.|..+|||||||||+|+. .||||+|+|+.+|++++...+..++++++|+|+++ .
T Consensus 63 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 122 (278)
T 2b6n_A 63 ------DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNAS 122 (278)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred ------CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCC
Confidence 1345688999999999999862 49999999999999987556788999999999998 5
Q ss_pred CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCCCCceEEEeecccCceeeeEEEeC
Q 003005 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILG 411 (858)
Q Consensus 333 g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~ 411 (858)
+++|||||||... .+.+.++++++.++|++||+||||++.... .+|+..+++|+|||++.+
T Consensus 123 g~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 184 (278)
T 2b6n_A 123 GPAVANMSLGGGA--------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN---------- 184 (278)
T ss_dssp SSEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------
T ss_pred CCeEEEECCCCCc--------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC----------
Confidence 9999999999743 357888999999999999999999998653 357888999999986422
Q ss_pred CceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHH
Q 003005 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (858)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 491 (858)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCC
Q 003005 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (858)
Q Consensus 492 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 571 (858)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCC
Q 003005 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (858)
Q Consensus 572 ~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 651 (858)
+.++.||++||.. ||+|||++|++++.. .++.|..++|||||||||||++|||+|++|+
T Consensus 185 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~~~--------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 243 (278)
T 2b6n_A 185 DSRSSFSNYGTCL-------------DIYAPGSSITSSWYT--------SNSATNTISGTSMASPHVAGVAALYLDENPN 243 (278)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEECTT--------STTCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCCcCCCCCCC-------------eEEeCCCCeECcccC--------CCCCEEEeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 2367899999865 899999999998753 2358999999999999999999999999999
Q ss_pred CCHHHHHHHHHccccccc
Q 003005 652 FSPSAIASALSTSATLYD 669 (858)
Q Consensus 652 lsp~~ik~~L~~TA~~~~ 669 (858)
|+++|||++|++||++..
T Consensus 244 lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 244 LSPAQVTNLLKTRATADK 261 (278)
T ss_dssp CCHHHHHHHHHHHSEESC
T ss_pred CCHHHHHHHHHHhCccCC
Confidence 999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=395.65 Aligned_cols=236 Identities=29% Similarity=0.396 Sum_probs=200.1
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.++. ...++|..
T Consensus 23 a~~~----~~~G~gv~VaViDtGvd~~h~~l~~~~------------------------------~~~~~~~~------- 61 (276)
T 4dzt_A 23 SYTY----TATGRGVNVYVIDTGIRTTHREFGGRA------------------------------RVGYDALG------- 61 (276)
T ss_dssp CEEC----SCCCTTCEEEEEESCCCTTCGGGTTCE------------------------------EEEEETTS-------
T ss_pred ceec----CCCCCCcEEEEEccCCCCCChhHccCe------------------------------eccccCCC-------
Confidence 6766 789999999999999999999998642 22233322
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC--
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-- 332 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~-- 332 (858)
..+.|..||||||||||+|.. .||||+|+|+.+|+++....+..++++++++|++++
T Consensus 62 -------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~ 120 (276)
T 4dzt_A 62 -------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHR 120 (276)
T ss_dssp -------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred -------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCC
Confidence 234578899999999999862 499999999999999876668899999999999987
Q ss_pred CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC-CCCCCCceEEEeecccCceeeeEEEeC
Q 003005 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILG 411 (858)
Q Consensus 333 g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~ 411 (858)
+++|||||||... ...++++++.+.++|++||+||||++..... .|+..+++|+|||++.+
T Consensus 121 ~~~vin~S~g~~~--------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 182 (276)
T 4dzt_A 121 RPAVANMSLGGGV--------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS---------- 182 (276)
T ss_dssp SSEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------
T ss_pred CCeEEEECCCCCC--------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC----------
Confidence 8999999999642 3678899999999999999999999986543 47888999999986422
Q ss_pred CceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHH
Q 003005 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (858)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 491 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCC
Q 003005 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (858)
Q Consensus 492 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 571 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCC
Q 003005 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (858)
Q Consensus 572 ~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 651 (858)
+.++.||++||.. ||+|||++|++++... +..|..++|||||||||||++|||+|++|+
T Consensus 183 ~~~~~~S~~g~~~-------------dv~ApG~~i~s~~~~~--------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 241 (276)
T 4dzt_A 183 DARASFSNYGSCV-------------DLFAPGASIPSAWYTS--------DTATQTLNGTSMATPHVAGVAALYLEQNPS 241 (276)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEECTTS--------SSCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCCcCCCCCCc-------------eEEeCCCCeEccccCC--------CCceEEeeEHHHHHHHHHHHHHHHHHHCCC
Confidence 2478899999976 8999999999998532 347999999999999999999999999999
Q ss_pred CCHHHHHHHHHccccccccC
Q 003005 652 FSPSAIASALSTSATLYDKN 671 (858)
Q Consensus 652 lsp~~ik~~L~~TA~~~~~~ 671 (858)
++++|||++|++||++....
T Consensus 242 lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 242 ATPASVASAILNGATTGRLS 261 (276)
T ss_dssp CCHHHHHHHHHHHSEESCCB
T ss_pred CCHHHHHHHHHhhCcCCccC
Confidence 99999999999999986543
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-46 Score=426.95 Aligned_cols=296 Identities=19% Similarity=0.216 Sum_probs=216.2
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +++|+||+|||||||||++||+|.++.. . ...++|.+.
T Consensus 25 i~~~~-aw~~----g~~G~gv~VaViDtGvd~~Hpdl~~~~~-----~-----------------------~~~~d~~~~ 71 (471)
T 1p8j_A 25 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD-----P-----------------------GASFDVNDQ 71 (471)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC-----G-----------------------GGCEETTTT
T ss_pred CChHH-HHhc----CCCCCCCEEEEEeCCcCCCChhHhhccC-----c-----------------------cCcccccCC
Confidence 44433 7776 7899999999999999999999997533 0 012233322
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
. ....+...+.|.++|||||||||+|..+++ ..+.||||+|+|+.+|+++. ..+++++|++|
T Consensus 72 ~------~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~g----~~~~~~~ai~~ 133 (471)
T 1p8j_A 72 D------PDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDG----EVTDAVEARSL 133 (471)
T ss_dssp B------SCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSS----CCCHHHHHHHH
T ss_pred C------CCCCCccCCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccCC----chhHHHHHHHh
Confidence 0 000111234678999999999999975432 23579999999999999863 35689999999
Q ss_pred HHH-CCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHh-----CCCEEEEecCCCCCCCCC----CCCCCCceEEEeec
Q 003005 329 AAQ-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSPKS----MSSFSPWIFTVGAA 398 (858)
Q Consensus 329 a~~-~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgA~ 398 (858)
+++ ++++|||||||..............+.+++..+.+ +|++||+||||+|..... .+..++++|+|||+
T Consensus 134 a~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~ 213 (471)
T 1p8j_A 134 GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA 213 (471)
T ss_dssp TSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE
T ss_pred hhccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecc
Confidence 999 89999999999754211111122345556655543 699999999999975321 12345789999986
Q ss_pred ccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccc
Q 003005 399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478 (858)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~ 478 (858)
+.+
T Consensus 214 ~~~----------------------------------------------------------------------------- 216 (471)
T 1p8j_A 214 TQF----------------------------------------------------------------------------- 216 (471)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 422
Q ss_pred cCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEE
Q 003005 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVAC 558 (858)
Q Consensus 479 ~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (858)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHH
Q 003005 559 ILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI 638 (858)
Q Consensus 559 i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~V 638 (858)
+.++.||++||... ...+|...+||..|+++.. .++.|..++|||||||||
T Consensus 217 -------------g~~a~~S~~g~~~~-------~~~~~~~~~~g~~i~st~~---------~~~~~~~~sGTS~AaP~V 267 (471)
T 1p8j_A 217 -------------GNVPWYSEACSSTL-------ATTYSSGNQNEKQIVTTDL---------RQKCTESHTGTSASAPLA 267 (471)
T ss_dssp -------------SCCCTTCCBCTTCC-------EEEECCCSTTSCCEEEEET---------TTEEEEEECSHHHHHHHH
T ss_pred -------------CCcccccCCCCcce-------EEeCCCCCCCCCCEEEeeC---------CCCccccCCCcccccchh
Confidence 23688999999876 4567888888899999974 234799999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 639 AGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 639 AG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
||++|||+|++|+|++++||++|++||+++.......... ......+..||+|+||+.+|++.
T Consensus 268 AG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n--------~~g~~~~~~~G~G~vda~~Av~~ 330 (471)
T 1p8j_A 268 AGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--------GVGRKVSHSYGYGLLDAGAMVAL 330 (471)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--------TTSCEEBTTTBTCBCCHHHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec--------CCCcccCCCCCCEEEcHhHHHHH
Confidence 9999999999999999999999999999876432211100 01112356899999999999974
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=422.19 Aligned_cols=283 Identities=23% Similarity=0.251 Sum_probs=210.8
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.++.. ..+.++|.++.
T Consensus 46 aw~~----g~tG~gv~VaViDtGvd~~Hpdl~~~~~----------------------------~~~~~d~~~~~----- 88 (503)
T 2id4_A 46 LWYN----NITGAGVVAAIVDDGLDYENEDLKDNFC----------------------------AEGSWDFNDNT----- 88 (503)
T ss_dssp HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTBC----------------------------GGGCEETTTTB-----
T ss_pred HHhc----CCCCCCeEEEEEeCCCCCCChhHhhccc----------------------------ccCcccCCCCC-----
Confidence 6765 7899999999999999999999998643 00123343320
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
.+.....|.++|||||||||+|..+++ ..+.||||+|+|+.+|+++. .+...+++++|+|+++++
T Consensus 89 ----~~~~p~~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~- 153 (503)
T 2id4_A 89 ----NLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN- 153 (503)
T ss_dssp ----SCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-
T ss_pred ----CCCCCCCCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-
Confidence 011122578899999999999975332 23479999999999999975 367888999999999988
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHH-----hCCCEEEEecCCCCCCCC--CCC--CCCCceEEEeecccCceee
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPK--SMS--SFSPWIFTVGAASHDRIYT 405 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~~p~vitVgA~~~~~~~~ 405 (858)
+|||||||..............+.++++.+. .+|++||+||||+|.... .++ ..++++|+|||++.+
T Consensus 154 ~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~---- 229 (503)
T 2id4_A 154 DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK---- 229 (503)
T ss_dssp SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT----
T ss_pred CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC----
Confidence 9999999975422111122345677777666 479999999999997532 222 245679999886422
Q ss_pred eEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHH
Q 003005 406 NSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIK 485 (858)
Q Consensus 406 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~ 485 (858)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccccc
Q 003005 486 QAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKA 565 (858)
Q Consensus 486 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 565 (858)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccccccCCCCCCCCCCCcCcCCCcccC----CCceEEeeccCCCCCCccccCccceeecccCchhHHHHHH
Q 003005 566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVA----PGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGL 641 (858)
Q Consensus 566 ~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~A----PG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 641 (858)
+.++.||++||.. |++| ||..|+++.. .++.|..++|||||||||||+
T Consensus 230 ------~~~a~~S~~g~~~-------------~~~a~~~gpG~~I~st~~---------~~~~~~~~sGTS~AaP~VAG~ 281 (503)
T 2id4_A 230 ------DLHPPYSEGCSAV-------------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAAGV 281 (503)
T ss_dssp ------SCCCTTCCCCTTE-------------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHHHH
T ss_pred ------CCcCCcCCCCCcc-------------eEeecCCCCCCceEeecC---------CCCceecCCCccccchhhhHH
Confidence 2367899999986 5665 9999999942 345899999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHccccccccC-CCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 642 AALIKQKFPSFSPSAIASALSTSATLYDKN-GGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 642 aALl~q~~P~lsp~~ik~~L~~TA~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
+|||+|++|+|+++|||.+|++||+++... ....... ......+..||+|+||+.+|++.
T Consensus 282 aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~--------~~g~~~~~~~G~G~vda~~Av~~ 342 (503)
T 2id4_A 282 YTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDS--------AMGKKYSHRYGFGKIDAHKLIEM 342 (503)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEEC--------SSSSEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceec--------CCCCccCcccCCcEecHHHHHHH
Confidence 999999999999999999999999987643 1100000 01112345799999999999974
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-45 Score=413.24 Aligned_cols=283 Identities=21% Similarity=0.241 Sum_probs=204.6
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||||||++||+|.++.. ...+++..+ .+......
T Consensus 22 ~~tG~GV~VaVIDTGId~~HpdL~gr~~-----------------------------~~~~~~v~~------~dg~~f~~ 66 (546)
T 2qtw_B 22 PDGGSLVEVYLLDTSIQSDHREIEGRVM-----------------------------VTDFENVPE------EDGTRFHR 66 (546)
T ss_dssp --CCTTSEEEEEESCCCTTSTTTTTTEE-----------------------------EEEEECCCC------CC------
T ss_pred CCCCCCcEEEEECCCCCCCChHHccccc-----------------------------ccCcccccC------CCCccccC
Confidence 6899999999999999999999997532 000010000 00000012
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC------CCCE
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDI 336 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~~V 336 (858)
.+.|..||||||||||+|+. .||||+|+|+.+|+++..+.+..++++++|+|+++. +++|
T Consensus 67 ~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~V 132 (546)
T 2qtw_B 67 QASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLV 132 (546)
T ss_dssp -CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeE
Confidence 34678999999999999873 499999999999999875557889999999999984 8999
Q ss_pred EEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCCCCceEEEeecccCceeeeEEEeCCceE
Q 003005 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (858)
Q Consensus 337 IN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 415 (858)
||||||+. +...++.+++++.++|++||+||||+|.+.. .+|+..+++|+|||++.+....
T Consensus 133 INmSlGg~--------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~a---------- 194 (546)
T 2qtw_B 133 VLLPLAGG--------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPV---------- 194 (546)
T ss_dssp EEECEEEE--------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCBC----------
T ss_pred EEecCCCC--------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCcc----------
Confidence 99999963 2367889999999999999999999998653 4588899999999976331100
Q ss_pred EEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCC
Q 003005 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (858)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 495 (858)
T Consensus 195 -------------------------------------------------------------------------------- 194 (546)
T 2qtw_B 195 -------------------------------------------------------------------------------- 194 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccc
Q 003005 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (858)
Q Consensus 496 a~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 575 (858)
..-.
T Consensus 195 ----------------------------------------------------------------------------~~s~ 198 (546)
T 2qtw_B 195 ----------------------------------------------------------------------------TLGT 198 (546)
T ss_dssp ----------------------------------------------------------------------------EETT
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 0001
Q ss_pred cccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHH
Q 003005 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655 (858)
Q Consensus 576 ~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~ 655 (858)
.||++||.. ||+|||++|+|+++.. ++.|..++|||||||||||++|||+|++|+|+|+
T Consensus 199 ~fSn~G~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~ 257 (546)
T 2qtw_B 199 LGTNFGRCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLA 257 (546)
T ss_dssp EECCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred CcCCCCCcc-------------eEEecCccEEeeccCC--------CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHH
Confidence 278888744 9999999999998532 2479999999999999999999999999999999
Q ss_pred HHHHHHHccccccccCCCccccccccCCCCCC-CCCCCCCcccccc--ccccccCCC
Q 003005 656 AIASALSTSATLYDKNGGPIMAQRAYAKPDEN-QSPATPFDMGSGF--VNATASLDP 709 (858)
Q Consensus 656 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~G~G~--vd~~~A~~~ 709 (858)
|||++|++||.+....+..+........|+.- ..+.....+|+|+ .++..+...
T Consensus 258 qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s~ 314 (546)
T 2qtw_B 258 ELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHSG 314 (546)
T ss_dssp HHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCCC
T ss_pred HHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCCC
Confidence 99999999997643222100000000011100 1122456789999 888888753
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=390.18 Aligned_cols=226 Identities=32% Similarity=0.462 Sum_probs=192.9
Q ss_pred CCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 003005 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (858)
Q Consensus 184 ~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~ 263 (858)
.+|+||+|||||||||++||+|.++. ...++|.. .
T Consensus 29 ~~G~gv~VaViDtGvd~~h~~l~~~~------------------------------~~~~~~~~---------------~ 63 (279)
T 3f7m_A 29 SAGAGACVYVIDTGVEDTHPDFEGRA------------------------------KQIKSYAS---------------T 63 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTCE------------------------------EEEEECSS---------------S
T ss_pred CCCCCCEEEEEcCCCCCCChhhcccc------------------------------ccccCCCC---------------C
Confidence 59999999999999999999998742 22233322 1
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCC-------CCE
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDG-------VDI 336 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g-------~~V 336 (858)
..|..||||||||||+|+. .||||+|+|+.+|+++....+..++++++++|+++++ ++|
T Consensus 64 ~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~V 129 (279)
T 3f7m_A 64 ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTV 129 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeE
Confidence 1278899999999999862 5999999999999998766688999999999999876 899
Q ss_pred EEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC-CCCCCCceEEEeecccCceeeeEEEeCCceE
Q 003005 337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (858)
Q Consensus 337 IN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 415 (858)
||||||.. ....++++++.+.++|++||+||||+|..... .|+..+++|+|||++.+
T Consensus 130 in~S~g~~--------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 187 (279)
T 3f7m_A 130 ASMSLGGG--------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN-------------- 187 (279)
T ss_dssp EEECCCEE--------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------
T ss_pred EEeCCCcC--------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC--------------
Confidence 99999964 34688999999999999999999999986543 47888999999986422
Q ss_pred EEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCC
Q 003005 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (858)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 495 (858)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccc
Q 003005 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (858)
Q Consensus 496 a~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 575 (858)
+.++
T Consensus 188 ----------------------------------------------------------------------------~~~~ 191 (279)
T 3f7m_A 188 ----------------------------------------------------------------------------DVRS 191 (279)
T ss_dssp ----------------------------------------------------------------------------SBBC
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2468
Q ss_pred cccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHH
Q 003005 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655 (858)
Q Consensus 576 ~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~ 655 (858)
.||++||.. ||+|||++|+++. .++.|..++|||||||||||++|||+|++|+ +++
T Consensus 192 ~~S~~g~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~ 247 (279)
T 3f7m_A 192 TFSNYGRVV-------------DIFAPGTSITSTW----------IGGRTNTISGTSMATPHIAGLAAYLFGLEGG-SAG 247 (279)
T ss_dssp TTCCBSTTC-------------CEEEECSSEEEEC----------GGGCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTT
T ss_pred CCCCCCCCC-------------eEEECCCCeEeec----------CCCCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHH
Confidence 899999865 8999999999998 4568999999999999999999999999999 999
Q ss_pred HHHHHHHcccccccc
Q 003005 656 AIASALSTSATLYDK 670 (858)
Q Consensus 656 ~ik~~L~~TA~~~~~ 670 (858)
+||++|++||++...
T Consensus 248 ~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 248 AMCGRIQTLSTKNVL 262 (279)
T ss_dssp THHHHHHHHSEESCC
T ss_pred HHHHHHHHhcccccc
Confidence 999999999987543
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=407.12 Aligned_cols=155 Identities=21% Similarity=0.300 Sum_probs=108.2
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||||.++.. .+.++|..+
T Consensus 62 aw~~----g~tG~GV~VaViDtGid~~HpDL~~n~~-----------------------------~~~~~~~~~------ 102 (600)
T 3hjr_A 62 AHRT----GVLGQGVNVAVVDDGLAIAHPDLADNVR-----------------------------PGSKNVVTG------ 102 (600)
T ss_dssp HHHH----TCSCTTCEEEEESSCCCTTCTTTGGGBC-----------------------------SCCBCTTTS------
T ss_pred HHHc----CCCCCCeEEEEEcCCCCCCChhHhhccc-----------------------------cCcceeecC------
Confidence 6666 7999999999999999999999997643 011222211
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHH-HHHHHCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI-DQAAQDG 333 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai-~~a~~~g 333 (858)
..+.....|.++|||||||||||..+ + ..+.||||+|+|+.+|++++...+..++++.++ +++..++
T Consensus 103 ---~~dp~p~~~~~gHGThVAGiIAa~~n-~--------~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~ 170 (600)
T 3hjr_A 103 ---SDDPTPTDPDTAHGTSVSGIIAAVDN-A--------IGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRD 170 (600)
T ss_dssp ---SSCCCCCSTTCCHHHHHHHHHHCCSS-S--------SSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHT
T ss_pred ---CCCCCCCCCCCChHHHHHHHHhEeCC-C--------CCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcC
Confidence 01112233578999999999998632 1 135799999999999999886667788887776 6778889
Q ss_pred CCEEEEccCCCCCCCCC--CccCCHHHHHHHHH--HhCCCEEEEecCCCCC
Q 003005 334 VDIISLSITPNRRPPGI--ATFFNPIDMALLSA--AKAGIFVVQAAGNTGP 380 (858)
Q Consensus 334 ~~VIN~S~G~~~~~~~~--~~~~~~~~~a~~~a--~~~Gi~vV~AAGN~g~ 380 (858)
++|||||||........ ......++.++..+ ..+|+++|+||||.+.
T Consensus 171 ~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~ 221 (600)
T 3hjr_A 171 NRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFN 221 (600)
T ss_dssp CSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSS
T ss_pred CCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccc
Confidence 99999999975432111 11111223333222 2579999999999875
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-25 Score=258.83 Aligned_cols=100 Identities=28% Similarity=0.390 Sum_probs=79.5
Q ss_pred ceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH---CCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEE
Q 003005 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ---DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV 371 (858)
Q Consensus 295 ~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~---~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~v 371 (858)
.+.||||+|+|+.+++.+ ..++++++|+||++ ++++|||||||....... ..+.+.++.++..|..+||+|
T Consensus 273 ~~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWA-PASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSC-HHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCcccCC-HHHHHHHHHHHHHHHhCCeEE
Confidence 457999999999998632 35789999999998 799999999997532100 112346788888899999999
Q ss_pred EEecCCCCCCC--------CCCCCCCCceEEEeeccc
Q 003005 372 VQAAGNTGPSP--------KSMSSFSPWIFTVGAASH 400 (858)
Q Consensus 372 V~AAGN~g~~~--------~~~~~~~p~vitVgA~~~ 400 (858)
|+||||+|... ..+|+.+|+||+|||++.
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999999643 346788999999999864
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-22 Score=220.48 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=80.4
Q ss_pred ecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecC
Q 003005 298 GMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAG 376 (858)
Q Consensus 298 GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 376 (858)
.+||+++++.+++.+. .....++++.+|+||++ ++++|||||||..........+.+.++.+++.|..+||+||+|||
T Consensus 91 ~~aP~a~~~~~~~~~~-~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 91 SAGGAVQQLLFYMADQ-SASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HTTSCEEEEEEEEECT-TSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hcCCCCcEEEEEeCCC-CCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 5799999999998765 33566889999999998 899999999997431100011235788888999999999999999
Q ss_pred CCCCCCC-------------CCCCCCCceEEEeeccc
Q 003005 377 NTGPSPK-------------SMSSFSPWIFTVGAASH 400 (858)
Q Consensus 377 N~g~~~~-------------~~~~~~p~vitVgA~~~ 400 (858)
|+|...+ .+|+.+|+|++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9997532 45688999999999864
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.4e-10 Score=126.50 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=64.4
Q ss_pred ecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH--HCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEec
Q 003005 298 GMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA--QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAA 375 (858)
Q Consensus 298 GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~--~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AA 375 (858)
+++++..++.+-.-.. ......++..+++.. .+-++|||+|||.....-. ..+.+.++.++..+..+||.|++|+
T Consensus 263 a~~~~i~~~~~~~~g~--~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~-~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 263 SAGANISTWVYSSPGR--HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLS-SAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHSTTSEEEEECCCSC--CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSC-HHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCceEEEEecCCc--ccccccHHHHHHHHhccCCCCcEEEecCCCcccccC-HHHHHHHHHHHHHHHhCCeEEEEec
Confidence 4555555554432211 111123444444433 2468999999997542211 1233567778888999999999999
Q ss_pred CCCCCCC----------CCCCCCCCceEEEeeccc
Q 003005 376 GNTGPSP----------KSMSSFSPWIFTVGAASH 400 (858)
Q Consensus 376 GN~g~~~----------~~~~~~~p~vitVgA~~~ 400 (858)
||+|... ..+|+.+|+|++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999753 246788999999999863
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=73.02 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=42.7
Q ss_pred CceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccccCC
Q 003005 116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATT 163 (858)
Q Consensus 116 ~~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~~~~ 163 (858)
.+.+++++|.+ ++||+++++++++++|+++|+|.+||++..+++..+
T Consensus 32 ~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt 78 (80)
T 3cnq_P 32 KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSA 78 (80)
T ss_dssp TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC
T ss_pred cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeee
Confidence 35688999998 999999999999999999999999999999887654
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-06 Score=77.95 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=41.0
Q ss_pred CceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccc
Q 003005 116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (858)
Q Consensus 116 ~~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~ 160 (858)
.+.+++++|.+.|+||+++++++++++|+++|+|.+||++..++.
T Consensus 69 ~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 69 YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp CCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred cCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 356889999989999999999999999999999999999987754
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.06 E-value=7.8e-06 Score=74.91 Aligned_cols=44 Identities=25% Similarity=0.176 Sum_probs=40.5
Q ss_pred ceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccc
Q 003005 117 KYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (858)
Q Consensus 117 ~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~ 160 (858)
+.++.++|.+.+|||++++++++++.|+++|+|.+|+++..++.
T Consensus 80 g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 80 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 56889999989999999999999999999999999999987753
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4e-05 Score=63.90 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=37.6
Q ss_pred eeEEEEE-cceeeEEEEEcCHHHHHHHhcC--CCeeEEEeCccccc
Q 003005 118 YLKLYSY-HYLINGFSVFVTPQQAEKLSRR--REVANVVSDFSVRT 160 (858)
Q Consensus 118 ~~~~~~~-~~~~ng~~v~~~~~~l~~L~~~--p~V~~v~~~~~~~~ 160 (858)
.++.+.| ..+++||+++++++.++.|+++ |.|.+||++..+..
T Consensus 30 g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 30 GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 3567778 3699999999999999999999 89999999987753
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=71.98 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=62.8
Q ss_pred CccccCCCCCCccc------cccceEEEEEeccccccCc-chHHHHHHHHHhCCCeEEEEEECCCCc--Cccc-CCCCCC
Q 003005 449 YVGECQDSSNFNQD------LVQGNLLICSYSIRFVLGL-STIKQAFETAKNLSAAGIVFYMDPFVI--GFQL-NPTPMK 518 (858)
Q Consensus 449 ~~~~c~~~~~~~~~------~~~Gkivl~~~~~~~~~g~-~~~~~~~~~~~~~Ga~g~i~~n~~~~~--~~~~-~~~~~~ 518 (858)
....|.....+... ..+|+|+|+.| |. |+|.+|+.+|+++||.++|+||+.... ...+ .+....
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R------G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~ 155 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR------GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVD 155 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES------CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCS
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEEC------CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCc
Confidence 35678765433211 25789999999 78 999999999999999999999975221 1111 223457
Q ss_pred CCeEEecChhhHHHHHHHHhccc
Q 003005 519 MPGIIIPSPDDSKILLQYYNSSL 541 (858)
Q Consensus 519 ip~~~i~~~~~~~~l~~~~~~~~ 541 (858)
||.++| +..+|..|++++....
T Consensus 156 IPsv~I-s~~~G~~L~~~L~~G~ 177 (194)
T 3icu_A 156 IVAIMI-GNLKGTKILQSIQRGI 177 (194)
T ss_dssp SEEEEE-CHHHHHHHHHHHHTTC
T ss_pred eeEEEE-CHHHHHHHHHHHHCCC
Confidence 898877 7788999999987653
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=95.95 E-value=0.006 Score=48.86 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=39.5
Q ss_pred CCceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCcccc
Q 003005 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVR 159 (858)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~ 159 (858)
..+.++.++|. .++++++++|++.++.|+++|+|++||+|..++
T Consensus 20 ~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 20 GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 44679999996 799999999999999999999999999998764
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.028 Score=51.08 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=57.2
Q ss_pred CcceEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEEe
Q 003005 765 NQSRTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIP 843 (858)
Q Consensus 765 ~~~~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~iP 843 (858)
..+.+.+..|+|.|. +..|++... . ..+++|.+.+|+||++..++|+|.+... ..+++.|.+.-+++..+.++
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~--~--~F~i~P~~g~L~pg~~~~i~V~F~P~~~--g~~~~~l~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTC--R--PFSIEPAIGTLNVGESMQLEVEFEPQSV--GDHSGRLIVCYDTGEKVFVS 113 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECC--T--TEEEESSEEEECTTCEEEEEEEECCSSS--BCCCCBCEEEESSSCEECCE
T ss_pred CCeEEEEEEEEECCCCCEEEEEecC--C--CeEEECCcCEECCCCEEEEEEEEEcCCC--ccEEEEEEEEECCCCEEEEE
Confidence 345667789999998 788876642 2 5778899999999999999999997753 33456666665666777776
Q ss_pred EEEE
Q 003005 844 LSVV 847 (858)
Q Consensus 844 ~~~~ 847 (858)
..+.
T Consensus 114 L~G~ 117 (122)
T 2ys4_A 114 LYGA 117 (122)
T ss_dssp ECCC
T ss_pred EEEE
Confidence 5543
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.35 Score=44.90 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=67.2
Q ss_pred eEEEeecC--cceEEEEEEEEcCC-CceEEEEeecC----CcceEEEeecEEEEeCCCEEEEEEEEEEecC-------CC
Q 003005 758 SITIARLN--QSRTVQRTLTNIAG-NETYSVGWSAP----YGVSMKVSPTHFSIASGEKQVLNVFFNATTS-------GT 823 (858)
Q Consensus 758 si~~~~~~--~~~~~~~tv~n~~~-~~ty~~~~~~~----~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~-------~~ 823 (858)
.|-++++. ...+-+++|+|.|. +.+|.+..... ..-.++++|..-+|+||++.+|.|++.+.+. ..
T Consensus 33 ~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~ 112 (140)
T 3qbt_B 33 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGE 112 (140)
T ss_dssp EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCHHHHHHHHHSS
T ss_pred eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEEccCcccccccch
Confidence 34445443 34556778999999 99998875321 1235778899999999999999999997552 11
Q ss_pred CeEEEEEEEEeCCccEEEEeEEEEEEe
Q 003005 824 AASFGRIGLFGNQGHIVNIPLSVVARL 850 (858)
Q Consensus 824 ~~~~G~i~~~~~~~~~l~iP~~~~~~~ 850 (858)
.-++.-|++.=.+|.+..||+.+.+..
T Consensus 113 ~~l~diLvL~Ve~G~d~fI~v~g~~~p 139 (140)
T 3qbt_B 113 DKIEDILVLHLDRGKDYFLTISGNYLP 139 (140)
T ss_dssp SCSCEEEEEEETTSCEEEEEEEEEECC
T ss_pred hhhheeEEEEeecCCcEEEEEeccccC
Confidence 334566777767899999999887654
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.21 Score=55.62 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=55.0
Q ss_pred CCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCc--CcccCCCCCCCCeEEecChhhHHHHHH
Q 003005 458 NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI--GFQLNPTPMKMPGIIIPSPDDSKILLQ 535 (858)
Q Consensus 458 ~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~--~~~~~~~~~~ip~~~i~~~~~~~~l~~ 535 (858)
.+...+++|||+|+.+ |.|.+..|+.+|..+||.|+|++++.... +.........+|.+.+ +.+++..|++
T Consensus 107 D~~~~dv~GkIvlv~~------g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~I-s~~~a~~L~~ 179 (421)
T 2ek8_A 107 DVAGKDLNGKIALIQR------GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGI-TKQEGDALAA 179 (421)
T ss_dssp TTTTSCCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEE-CHHHHHHHHH
T ss_pred hcCCCCcCceEEEEeC------CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEe-CHHHHHHHHH
Confidence 3444478999999998 66789999999999999999999976321 1111123456888876 6778888888
Q ss_pred HHh
Q 003005 536 YYN 538 (858)
Q Consensus 536 ~~~ 538 (858)
.+.
T Consensus 180 ~l~ 182 (421)
T 2ek8_A 180 NLR 182 (421)
T ss_dssp HHH
T ss_pred Hhh
Confidence 773
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=91.14 E-value=1.1 Score=40.03 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=43.6
Q ss_pred eEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecC
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTS 821 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~ 821 (858)
..+++.|.|... +.+|.+++....++.+. .+..|+|+||+.+++.|.+.++..
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEPGEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECTTCEEEEEEEEEECGG
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECCCCEEEEEEEEEEChH
Confidence 467788999999 99999999866665543 255799999999999999999875
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.64 E-value=1.7 Score=38.20 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=57.6
Q ss_pred CeEEEeecC--cceEEEEEEEEcCC-CceEEEEeec-CCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEE
Q 003005 757 PSITIARLN--QSRTVQRTLTNIAG-NETYSVGWSA-PYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGL 832 (858)
Q Consensus 757 ~si~~~~~~--~~~~~~~tv~n~~~-~~ty~~~~~~-~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~ 832 (858)
..+-++.+. ...+.+.+++|.|+ +..|++.... ..+...+++|.+=+|+||++.+|.|++.+... +.| .=.|.+
T Consensus 15 ~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~~-g~f-~~~i~v 92 (112)
T 2e6j_A 15 ELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSIIL-GNF-EEEFLV 92 (112)
T ss_dssp SEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCCC-EEE-EEEECE
T ss_pred ccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCCc-ceE-EEEEEE
Confidence 345555543 34566788999999 8888874211 11235778899999999999999999997643 333 345666
Q ss_pred EeCCc-cEEEEeEEEE
Q 003005 833 FGNQG-HIVNIPLSVV 847 (858)
Q Consensus 833 ~~~~~-~~l~iP~~~~ 847 (858)
.-++. ..+.+-+-+.
T Consensus 93 ~~~g~~~~~~L~i~G~ 108 (112)
T 2e6j_A 93 NVNGSPEPVKLTIRGC 108 (112)
T ss_dssp EESSCSSCCCEEEEEE
T ss_pred EECCCCceEEEEEEEE
Confidence 54432 3344544443
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.58 E-value=0.19 Score=62.61 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=23.1
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFAD 207 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~ 207 (858)
.|+|+||+|||+|||||+.+|.|+-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 5999999999999999999999953
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=87.17 E-value=6 Score=42.84 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=67.0
Q ss_pred eEEEeecC--cceEEEEEEEEcCC-CceEEEEeecCC----cceEEEeecEEEEeCCCEEEEEEEEEEecCC-------C
Q 003005 758 SITIARLN--QSRTVQRTLTNIAG-NETYSVGWSAPY----GVSMKVSPTHFSIASGEKQVLNVFFNATTSG-------T 823 (858)
Q Consensus 758 si~~~~~~--~~~~~~~tv~n~~~-~~ty~~~~~~~~----~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~-------~ 823 (858)
.|.++++. ...+-+.+|+|+|. +.+|.+...... .-.++++|..-+|+||++.+|.|++.+.... .
T Consensus 36 ~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~ 115 (366)
T 3qis_A 36 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGE 115 (366)
T ss_dssp EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCTTTHHHHHHTS
T ss_pred eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECHHHHHHHhcCc
Confidence 34444433 44566778999999 999988654221 2347889999999999999999999988731 2
Q ss_pred CeEEEEEEEEeCCccEEEEeEEEEEEee
Q 003005 824 AASFGRIGLFGNQGHIVNIPLSVVARLS 851 (858)
Q Consensus 824 ~~~~G~i~~~~~~~~~l~iP~~~~~~~~ 851 (858)
.-.+--+++.=.+|.+.-+|.-+.+..+
T Consensus 116 ~~l~diLvL~ve~G~d~FI~v~~~~~~s 143 (366)
T 3qis_A 116 DKIEDILVLHLDRGKDYFLTISGNYLPS 143 (366)
T ss_dssp SCSCEEEEEEETTSCEEEEEEEEEECCC
T ss_pred cccceEEEEEEeCCCcEEEEeccccCCc
Confidence 2344567777677888888887776643
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=86.29 E-value=1.4 Score=49.21 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=25.0
Q ss_pred CCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccC
Q 003005 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSS 612 (858)
Q Consensus 571 ~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~ 612 (858)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 183 ~~~~~~~S~~g~~v-------------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 183 NLDHAAFSQYTDQV-------------EISGPGEAILSTVTV 211 (441)
T ss_dssp TCCBCTTSCCCTTE-------------EEEEECSSEEEECST
T ss_pred CCCCCccccCCCce-------------EEEeccCCeeccccC
Confidence 45789999999865 999999999999863
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=83.04 E-value=2.8 Score=46.77 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=51.2
Q ss_pred cccccceEEEEEeccccccC---cchHHHH----HHHHHhCCCeEEEEEECCCCc------C-cccCCCCCCCCeEEecC
Q 003005 461 QDLVQGNLLICSYSIRFVLG---LSTIKQA----FETAKNLSAAGIVFYMDPFVI------G-FQLNPTPMKMPGIIIPS 526 (858)
Q Consensus 461 ~~~~~Gkivl~~~~~~~~~g---~~~~~~~----~~~~~~~Ga~g~i~~n~~~~~------~-~~~~~~~~~ip~~~i~~ 526 (858)
..+++|||||+.++.+.... .+.+..+ ..+|.++||+|+|++|+.... + .........||.+.| +
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~I-s 202 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAI-S 202 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEE-C
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEe-c
Confidence 46899999999884332110 1123333 457999999999999864321 1 111223457899888 7
Q ss_pred hhhHHHHHHHHhcc
Q 003005 527 PDDSKILLQYYNSS 540 (858)
Q Consensus 527 ~~~~~~l~~~~~~~ 540 (858)
.+++..|...+...
T Consensus 203 ~~da~~L~~~l~~g 216 (444)
T 3iib_A 203 NPDADLINAMLKRD 216 (444)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCC
Confidence 78888888887653
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=81.54 E-value=1.1 Score=52.99 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=34.3
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 505 (858)
.+++|||+|+.+ |.|.+.+|+.+|+.+||+|+|+|++.
T Consensus 151 ~~v~GkIvlv~~------G~~~~~~Kv~~A~~~GA~gviiy~dp 188 (707)
T 3fed_A 151 INCTGKIVIARY------GKIFRGNKVKNAMLAGAIGIILYSDP 188 (707)
T ss_dssp CCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCCCCeEEEEEC------CCCCHhHHHHHHHHCCCEEEEEEcCc
Confidence 468999999998 67889999999999999999999863
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=80.36 E-value=1.2 Score=51.91 Aligned_cols=39 Identities=31% Similarity=0.523 Sum_probs=35.1
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
.+++|||+|+.+ |.|.+..|+.+|..+||+|+|+|++..
T Consensus 128 vdv~GkIvlv~~------g~~~~~~K~~~A~~~GA~gvii~~~~~ 166 (640)
T 3kas_A 128 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT 166 (640)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHTTTCSEEEEECCTT
T ss_pred cccCCcEEEEec------CCCCHHHHHHHHHHCCCeEEEEEeccc
Confidence 478999999998 678899999999999999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 858 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 3e-30 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 1e-11 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-04 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 1e-11 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 4e-05 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 8e-11 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-09 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 2e-09 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-09 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-08 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 7e-09 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-08 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 1e-08 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 8e-06 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-08 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-06 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 4e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 6e-05 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 4e-08 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-04 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 5e-08 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 8e-08 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 7e-04 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 4e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 122 bits (306), Expect = 3e-30
Identities = 84/534 (15%), Positives = 159/534 (29%), Gaps = 131/534 (24%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG 241
++ I ID+G D +H +
Sbjct: 17 SDSQAGNRTICIIDSGYDRSHNDLNANN-------------------------------- 44
Query: 242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP 301
+T + + ++ P + + HG+H A A + G+ P
Sbjct: 45 --------VTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAI---------ANNEGVVGVMP 87
Query: 302 RSHIAVY--KALYKSFGGFAADVVAAIDQAAQDG-VDIISLSITPNRRPPGIATFFNPID 358
+ ++ K ++ G+++ +VAAID G +++++S+ + N
Sbjct: 88 NQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHY 147
Query: 359 MALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISG 418
G+ ++ AAGN G S S + + +V A + + + + I
Sbjct: 148 N-------NGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEI-- 198
Query: 419 VGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV 478
+ L + D+ +G SN + SY+
Sbjct: 199 ---------SGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYA---- 245
Query: 479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYN 538
N SA G + F K+ + S
Sbjct: 246 ----------PAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINST 295
Query: 539 SSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDD--ADIMK 596
+ + I+Y ++ P ++ FL D +DI
Sbjct: 296 K------------------------ACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV 331
Query: 597 PNLVAPGNSIWAAWSSLG--TDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654
P++ + A + LG T + + +GTSMA PH++G+A L+ P S
Sbjct: 332 PSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391
Query: 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
S + +AL+ +A G G +NA A+
Sbjct: 392 SQVRAALNATADDLS-------------------VAGRDNQTGYGMINAVAAKA 426
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 64.2 bits (155), Expect = 1e-11
Identities = 57/243 (23%), Positives = 87/243 (35%), Gaps = 63/243 (25%)
Query: 166 PQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICE 225
PQ AW G G I IDTG+D THP +
Sbjct: 15 PQNTYTDY-AWDVTKG----SSGQEIAVIDTGVDYTHPDLDGKVIKG------------- 56
Query: 226 VTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIP 285
++ + P D + HG+H A +AA
Sbjct: 57 -----------------------------YDFVDNDYDPMDLNNHGTHVAGIAAAET--- 84
Query: 286 VVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNR 345
++ +GMAP + I +AL ++ G +D+ AI AA G ++I+LS+ +
Sbjct: 85 -----NNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC 139
Query: 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA-SHDRIY 404
++ A+ A G VV AAGN G S + + VGA +DR+
Sbjct: 140 -------HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLA 192
Query: 405 TNS 407
+ S
Sbjct: 193 SFS 195
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 41.1 bits (95), Expect = 4e-04
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 610 WSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666
+ G +A MSGTSMA+PH+AGLAAL+ + + I A+ +A
Sbjct: 204 VAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTAD 258
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 64.1 bits (154), Expect = 1e-11
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 595 MKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654
+ APG+S+++ W + G + +SGTSMA PH++GLAA I + PS S
Sbjct: 223 GDIEISAPGSSVYSTWYNGG----------YNTISGTSMATPHVSGLAAKIWAENPSLSN 272
Query: 655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVN 702
+ + S L A D GG + + G GF
Sbjct: 273 TQLRSNLQERAKSVDIKGGY------------GAAIGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 44.1 bits (102), Expect = 4e-05
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFAD 207
T G G+ I +DTG++ +HP +
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 63.1 bits (152), Expect = 8e-11
Identities = 49/267 (18%), Positives = 88/267 (32%), Gaps = 41/267 (15%)
Query: 597 PNLVAPGNSIWAAWSSLGTDSVEFQ--------GESFAMMSGTSMAAPHIAGLAALIKQK 648
++ APG +I + + E G ++ GTSMAAPH+ G+ A++ QK
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
FP+ P I L +A ++ NG D G G V A+L
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNG-------------------WDHDTGYGLVKLDAALQ 438
Query: 709 PGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISGADLNLPSITIARLNQSR 768
L ++ + + + + N + A I S
Sbjct: 439 GPLPTQGGVEEFQ--VVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSG 496
Query: 769 TVQRTLTNIAGNETYSVGWSA-----PYGVSMKVSPTHFSIASG-----EKQVLNVFFNA 818
T + + + Y ++++++ + G + LNV FN+
Sbjct: 497 TYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNFNS 556
Query: 819 TTSGTAASFGRIGLFGNQGHIVNIPLS 845
T + + + +V PL
Sbjct: 557 TLQVKFS--TNLSTLKDPQFVVVDPLL 581
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 59.7 bits (143), Expect = 1e-09
Identities = 62/420 (14%), Positives = 103/420 (24%), Gaps = 81/420 (19%)
Query: 45 YIVTLKQAPSVHRFAQELRRGNKNHGFHKQNGTSGRLSRLNNPRNVSISHPRSGYNISRV 104
+V V + + + NG ++ ++ G + +
Sbjct: 34 ILVGYNDRSEVDKIVKAV------------NGKVVLELPQIKVVSIKLN----GMTVKQA 77
Query: 105 HDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTH 164
+D I A KG +Y++ LI V P + +
Sbjct: 78 YDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWG 137
Query: 165 TPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGIC 224
+G+ Q W E +G +++ +DTG+D THP P
Sbjct: 138 LEA-IGVTQQLW-----EEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPA-------- 183
Query: 225 EVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGI 284
G G+H A A
Sbjct: 184 -----------------------------FDEELPAGTDSSYGGSAGTHVAGTIAAKKDG 214
Query: 285 PVVVTGHHFGNASGMAPRSHIAVYKALYKSFG------GFAADVVAAIDQAAQDGVDIIS 338
+V G+AP + I V A I A G +++
Sbjct: 215 KGIV---------GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMN 265
Query: 339 LSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
S + F+ + + VV A NT S + P + V A
Sbjct: 266 HSWGGWGYSYTMKEAFD------YAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAAL 319
Query: 399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSN 458
+ + VG APG + T+ G D
Sbjct: 320 DYYGGTFRVAGFSSRSDGVSVG-APGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 58.5 bits (140), Expect = 2e-09
Identities = 27/268 (10%), Positives = 55/268 (20%), Gaps = 55/268 (20%)
Query: 160 TATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPS-FADDASEHSYPVPS 218
TA H P I + +G I G S +
Sbjct: 3 TAKGHNPTEF-----PTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQFTSANGLA--- 54
Query: 219 HFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVA 278
++Q + +
Sbjct: 55 ------------------------------------SVNTQTIQTGSSNGDYSDDQQGQG 78
Query: 279 AGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-GVDII 337
+ +V A + + + + A +QA D +I
Sbjct: 79 EWDLDSQSIVG---------SAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVI 129
Query: 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGA 397
++S+ D +AA G ++G+ G + + +
Sbjct: 130 NVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVS 189
Query: 398 ASHDRIYTNSIILGNSLTISGVGLAPGT 425
++ T S + T
Sbjct: 190 WPASSPNVIAVGGTTLYTTSAGAYSNET 217
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 56.8 bits (136), Expect = 3e-09
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 32/113 (28%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
+ +++APG SI + G + +GTSMA+PH+AG AALI K P+++ +
Sbjct: 195 ELDVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNT 244
Query: 656 AIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708
+ S+L + T F G G +N A+
Sbjct: 245 QVRSSLENTTT----------------------KLGDSFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 54.5 bits (130), Expect = 1e-08
Identities = 42/245 (17%), Positives = 68/245 (27%), Gaps = 59/245 (24%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G V + ID+GID +HP
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKV-------------------------------------- 44
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
G + +PF + G H V ++ G+AP + +
Sbjct: 45 ------AGGASMVPSETNPFQDNNSH--------GTHVAGTVAALNNSIGVLGVAPSASL 90
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
K L G + ++ I+ A + +D+I+ P G A +D A+ S
Sbjct: 91 YAVKVLGADGSGQYSWIINGIEWAIANNMDVIN---MSLGGPSGSAALKAAVDKAVASGV 147
Query: 366 KAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGT 425
+ S P + VGA + +G L + APG
Sbjct: 148 VVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVM----APGV 203
Query: 426 DKMYT 430
T
Sbjct: 204 SIQST 208
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 55.3 bits (132), Expect = 7e-09
Identities = 55/261 (21%), Positives = 88/261 (33%), Gaps = 68/261 (26%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G V + +DTGI +HP F +G
Sbjct: 23 GANVKVAVLDTGIQASHPDLNVVGG-----------------ASFVAGE----------- 54
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
A DG+GH G H V + G+AP +
Sbjct: 55 ----------------AYNTDGNGH---------GTHVAGTVAALDNTTGVLGVAPSVSL 89
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
K L S G + +V+ I+ A +G+D+I++S+ + A+ +A
Sbjct: 90 YAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS-------GSTAMKQAVDNAY 142
Query: 366 KAGIFVVQAAGNTGPSPKSMS----SFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421
G+ VV AAGN+G S + + + + VGA + + +G L +
Sbjct: 143 ARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVM---- 198
Query: 422 APGTDKMYTLISALHALNNNT 442
APG T + +A N T
Sbjct: 199 APGAGVYSTYPTNTYATLNGT 219
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 55.0 bits (131), Expect = 1e-08
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS 655
+ ++APG +++ + + ++A ++GTSMA+PH+AG AALI K P+ S S
Sbjct: 194 ELEVMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 656 AIASALSTSAT 666
+ + LS++AT
Sbjct: 244 QVRNRLSSTAT 254
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 621 QGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRA 680
G GTS AAP AG+ L+ + P+ + + SA +KN A
Sbjct: 253 NGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA 312
Query: 681 YAKPDENQSPATPFDMGSGFVNATASLD 708
K ++ G G ++A ++
Sbjct: 313 MGKKYSHR-------YGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.7 bits (109), Expect = 8e-06
Identities = 31/213 (14%), Positives = 53/213 (24%), Gaps = 53/213 (24%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GVV +D G+D + D+
Sbjct: 45 GAGVVAAIVDDGLDYENEDLKDN------------------------------------- 67
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
G ++ + + P H A + G+ + I
Sbjct: 68 ---FCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAK-----KGNNFCGVGVGYNAKI 119
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
+ + L D A++ D DI S S P + + + AL+
Sbjct: 120 SGIRILSGDITT--EDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGV 176
Query: 366 -----KAGIFVVQAAGNTGPSPKSMSSFSPWIF 393
G V A+GN G + +
Sbjct: 177 TEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNS 209
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 53.8 bits (128), Expect = 2e-08
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVA--PGNSIWAAWSSLGT------- 615
A S ++ ++ +A G S A V N+ A++S G
Sbjct: 136 AVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAP 195
Query: 616 ---DSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666
+ G ++A ++GTSMA PH+AG AAL+KQK PS+S I + L +AT
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT 249
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 47.6 bits (112), Expect = 3e-06
Identities = 49/232 (21%), Positives = 76/232 (32%), Gaps = 61/232 (26%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G GV + +DTGI THP F G
Sbjct: 23 GSGVKVAVLDTGIS-THPDLNIRGG-----------------ASFVPGE----------- 53
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
S DG+GHG+H A A ++ G+AP + +
Sbjct: 54 ----------------PSTQDGNGHGTHVAGTIA---------ALNNSIGVLGVAPSAEL 88
Query: 306 AVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAA 365
K L S G + + ++ A +G+ + +LS+ ++ A+ SA
Sbjct: 89 YAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-------PSATLEQAVNSAT 141
Query: 366 KAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTIS 417
G+ VV A+GN+G S + VGA + + G L I
Sbjct: 142 SRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 604 NSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALST 663
S+ + + G S +SGTSMA PH+AGLAA + + + SA T
Sbjct: 196 GSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYIADT 255
Query: 664 SATLYDKNGG 673
+ N
Sbjct: 256 ANKGDLSNIP 265
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 43.2 bits (100), Expect = 6e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 182 YETAGEGVVIGFIDTGIDPTHPSFA---------DDASEHSYPVPSHFSGIC 224
E+AG+G + IDTGI+ +HP F +S +H +G
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTV 77
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 26/121 (21%)
Query: 595 MKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAM--MSGTSMAAPHIAGLAALIKQKFP-- 650
+KP+++APG I +A SSL DS + M GTSMA P +AG A +++ F
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKN 275
Query: 651 ---SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASL 707
+ PS + +AL A + + G G V SL
Sbjct: 276 RGITPKPSLLKAALIAGA-------------------ADIGLGYPNGNQGWGRVTLDKSL 316
Query: 708 D 708
+
Sbjct: 317 N 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 42.6 bits (98), Expect = 1e-04
Identities = 27/177 (15%), Positives = 46/177 (25%), Gaps = 50/177 (28%)
Query: 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245
G+G ++ DTG+D + F G +
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSMH---------EAFRGKITALYALGRTN----------- 60
Query: 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHI 305
+ D +GHG+H A + GMAP++++
Sbjct: 61 -----------------NANDTNGHGTHVAG-----------SVLGNGSTNKGMAPQANL 92
Query: 306 AVYKALYK--SFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMA 360
+ GG +++ QA G I + S N D
Sbjct: 93 VFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYV 149
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 53.6 bits (127), Expect = 5e-08
Identities = 41/225 (18%), Positives = 58/225 (25%), Gaps = 63/225 (28%)
Query: 160 TATTHTPQFL----GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYP 215
T +TP + P+G G+G I I G S A +
Sbjct: 2 APTAYTPLDVAQAYQFPEG---------LDGQGQCIAIIALGGGYDETSLAQYFASLGVS 52
Query: 216 VPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
P DG +
Sbjct: 53 APQV-------------------------------------------VSVSVDGATNQPT 69
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335
G G A +AP + IAVY A G A
Sbjct: 70 GDPNGPDGE----VELDIEVAGALAPGAKIAVYFAPNTDAGFLNAI--TTAVHDPTHKPS 123
Query: 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGP 380
I+S+S A+ ++ A L AA G+ V+ AAG++G
Sbjct: 124 IVSISWGGPEDSWAPAS-IAAMNRAFLDAAALGVTVLAAAGDSGS 167
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.9 bits (125), Expect = 8e-08
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 622 GESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAY 681
+ +GTS +AP AG+ AL + + + + + ++ N
Sbjct: 250 QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVG 309
Query: 682 AKPDENQSPATPFDMGSGFVNATASLD 708
K G G ++A A +
Sbjct: 310 RKVSH--------SYGYGLLDAGAMVA 328
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 186 GEGVVIGFIDTGIDPTHPSFAD 207
G G+V+ +D GI+ HP A
Sbjct: 36 GHGIVVSILDDGIEKNHPDLAG 57
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 50.5 bits (119), Expect = 4e-07
Identities = 40/218 (18%), Positives = 63/218 (28%), Gaps = 57/218 (26%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
G G I +DTG+ HP A
Sbjct: 27 AEGSGAKIAIVDTGVQSNHPDLAG------------------------------------ 50
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+ + +G+G T + ++ +G AP++
Sbjct: 51 --------KVVGGWDFVDNDSTPQNGNGHGT------HCAGIAAAVTNNSTGIAGTAPKA 96
Query: 304 HIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLS 363
I + L S G V I AA G +ISLS G + + A+
Sbjct: 97 SILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLS-------LGGTVGNSGLQQAVNY 149
Query: 364 AAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHD 401
A G VV AAGN G + + ++ V + +
Sbjct: 150 AWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN 187
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 624 SFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAK 683
++A +SGTSMA PH+AG+A L+ + S S I +A+ +A
Sbjct: 217 TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTAD----------------- 257
Query: 684 PDENQSPATPFDMGSGFVNATASLD 708
+ T G VNA ++
Sbjct: 258 ----KISGTGTYWAKGRVNAYKAVQ 278
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.22 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.88 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.02 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 91.06 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 89.38 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=4.8e-52 Score=493.63 Aligned_cols=336 Identities=23% Similarity=0.292 Sum_probs=249.3
Q ss_pred eeEEEEEcceeeEEEEEcCHH----HHHHH--hcCCCeeEEEeCccccccCC----CCCc--------------------
Q 003005 118 YLKLYSYHYLINGFSVFVTPQ----QAEKL--SRRREVANVVSDFSVRTATT----HTPQ-------------------- 167 (858)
Q Consensus 118 ~~~~~~~~~~~ng~~v~~~~~----~l~~L--~~~p~V~~v~~~~~~~~~~~----~~~~-------------------- 167 (858)
.+++.++. .++.+.++++.. ..+.+ ..+|+|++|||+...++... ..+.
T Consensus 53 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (671)
T d1r6va_ 53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL 131 (671)
T ss_dssp CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred CEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccc
Confidence 45555554 456677776542 22333 35899999999865543210 0000
Q ss_pred ---c-----cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCcee
Q 003005 168 ---F-----LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKL 239 (858)
Q Consensus 168 ---~-----~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv 239 (858)
. +++++..|+. ++|+||+|||||||||++||||.++..
T Consensus 132 ~~~~w~l~~i~~~~a~~~~-----~tG~gV~VaViDtGvd~~Hpdl~~~~~----------------------------- 177 (671)
T d1r6va_ 132 SNELWGLEAIGVTQQLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQVI----------------------------- 177 (671)
T ss_dssp GGGCHHHHHTTCCHHHHHH-----CSCTTCEEEEEESCCBTTSGGGTTTBC-----------------------------
T ss_pred cccCcChhhcCccHHHHhc-----CCCCCCEEEEEcCCcCCCChhhcCCcc-----------------------------
Confidence 1 2222223443 799999999999999999999997643
Q ss_pred eeeeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCC-----
Q 003005 240 IGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS----- 314 (858)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~----- 314 (858)
..+++..+. ......++.|..+|||||||||+|+.+. .++.||||+|+|+++|++++.
T Consensus 178 -~~~~~~~~~-------~~~~~~~~~d~~gHGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~~ 240 (671)
T d1r6va_ 178 -AGYRPAFDE-------ELPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGG 240 (671)
T ss_dssp -CEEEGGGTE-------EECTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHCT
T ss_pred -cCccccccC-------CCCCCCcCcccCCCCccccceeeeeccc---------cceeeecCcceEEEEEecccccccCC
Confidence 112221110 0011234557889999999999997531 246799999999999998641
Q ss_pred -CCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCce
Q 003005 315 -FGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWI 392 (858)
Q Consensus 315 -~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~v 392 (858)
......+++++|+||+++|++|||||||+.. ....+..+++.+.++|+++|+||||++.+. ..+|+..|++
T Consensus 241 ~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-------~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~v 313 (671)
T d1r6va_ 241 NGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGV 313 (671)
T ss_dssp TSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTC
T ss_pred CCcccHHHHHHHHHHHHhCCCcEEeccccccc-------CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCce
Confidence 2256778999999999999999999998743 235788899999999999999999998764 4678889999
Q ss_pred EEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEE
Q 003005 393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472 (858)
Q Consensus 393 itVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~ 472 (858)
|+|||++....
T Consensus 314 i~Vga~~~~~~--------------------------------------------------------------------- 324 (671)
T d1r6va_ 314 IQVAALDYYGG--------------------------------------------------------------------- 324 (671)
T ss_dssp EEEEEEEEETT---------------------------------------------------------------------
T ss_pred EEEEEecCCCC---------------------------------------------------------------------
Confidence 99999753210
Q ss_pred eccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEe
Q 003005 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK 552 (858)
Q Consensus 473 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 552 (858)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCC--------ccccCcc
Q 003005 553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDS--------VEFQGES 624 (858)
Q Consensus 553 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~~~ 624 (858)
...++.||+|||.. ||+|||++|+|+++...... ....++.
T Consensus 325 ------------------~~~~a~fS~~g~~~-------------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~ 373 (671)
T d1r6va_ 325 ------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGT 373 (671)
T ss_dssp ------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCC
T ss_pred ------------------cceeeeccCCCCCc-------------eEEecCCCeEeecCCCCccccccccccccccCCCe
Confidence 01368899999876 89999999999986543211 1234568
Q ss_pred ceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 003005 625 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704 (858)
Q Consensus 625 y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~ 704 (858)
|..++|||||||||||++|||+|++|+|+++|||++|++||+++...+. +..||||+||+.
T Consensus 374 y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~-------------------~~~~G~G~vna~ 434 (671)
T d1r6va_ 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------------------DHDTGYGLVKLD 434 (671)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC-------------------BTTTBTCBCCHH
T ss_pred eeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC-------------------CCCcccChhCHH
Confidence 9999999999999999999999999999999999999999998765433 468999999999
Q ss_pred ccCCCCe
Q 003005 705 ASLDPGL 711 (858)
Q Consensus 705 ~A~~~~~ 711 (858)
+||+..+
T Consensus 435 ~Av~~~~ 441 (671)
T d1r6va_ 435 AALQGPL 441 (671)
T ss_dssp HHHHCCC
T ss_pred HHhhCcC
Confidence 9997543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=3e-48 Score=441.29 Aligned_cols=371 Identities=19% Similarity=0.267 Sum_probs=233.1
Q ss_pred CCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 003005 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (858)
Q Consensus 184 ~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~ 263 (858)
.+|+||+|||||||||++||+|.++.. ..+++.. ..+...
T Consensus 19 ~~G~gv~VaviDtGid~~Hp~~~~~~~------------------------------~~~~~~~----------~~~~~~ 58 (435)
T d1v6ca_ 19 SQAGNRTICIIDSGYDRSHNDLNANNV------------------------------TGTNNSG----------TGNWYQ 58 (435)
T ss_dssp TTGGGCEEEEEESCCCTTSTTTTTSEE------------------------------EECCCTT----------SCCTTC
T ss_pred cCCCCcEEEEEcCCCCCCChhhccCee------------------------------eeeccCC----------CCCCCC
Confidence 589999999999999999999987532 1222211 112345
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCC--cceeeeeehhcCCCCCCHHHHHHHHHHHHH-CCCCEEEEc
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAP--RSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DGVDIISLS 340 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP--~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~~VIN~S 340 (858)
+.|++||||||||||||+.+. .++.|||| +++|+.+|++.....+...++++||+++++ .+++|||+|
T Consensus 59 ~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S 129 (435)
T d1v6ca_ 59 PGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMS 129 (435)
T ss_dssp CCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecc
Confidence 678899999999999997532 24679999 899999999987555677789999999996 599999999
Q ss_pred cCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCceEEEe--
Q 003005 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISG-- 418 (858)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~-- 418 (858)
||.... ...+.++++.+.++|+++|+||||+|....++|+.++++|+|||++.+.....+..++....+..
T Consensus 130 ~g~~~~-------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG 202 (435)
T d1v6ca_ 130 LGGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPG 202 (435)
T ss_dssp CCBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEEC
T ss_pred cCCCCC-------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecc
Confidence 997543 35677888999999999999999999998899999999999999987754433322222221111
Q ss_pred eec---CCCCCceeE-EEEcccccCCCCcc-cCCCCccccCC-------------------CCCCccccccceEEEEEec
Q 003005 419 VGL---APGTDKMYT-LISALHALNNNTTT-TDDMYVGECQD-------------------SSNFNQDLVQGNLLICSYS 474 (858)
Q Consensus 419 ~~~---~~~~~~~~~-l~~~~~~~~~~~~~-~~~~~~~~c~~-------------------~~~~~~~~~~Gkivl~~~~ 474 (858)
..+ .+.....+. .............. ........|.. ...+....+.+++.++.+.
T Consensus 203 ~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (435)
T d1v6ca_ 203 EAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV 282 (435)
T ss_dssp SSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC
T ss_pred cceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeecc
Confidence 000 000000000 00000000000000 00000000000 0011122233444444432
Q ss_pred cccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeee
Q 003005 475 IRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFG 554 (858)
Q Consensus 475 ~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 554 (858)
.... ...........+...++.+++.+
T Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 309 (435)
T d1v6ca_ 283 GNQG-SSYPEINSTKACKTAGAKGIIVY---------------------------------------------------- 309 (435)
T ss_dssp SCSS-SSCTHHHHHHHHHHTTCSEEEEE----------------------------------------------------
T ss_pred CCcc-ccceeeeeceeecccCCcceEEe----------------------------------------------------
Confidence 1111 11112222233333333333333
Q ss_pred eeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCC-----CC--CCccccCcccee
Q 003005 555 AVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSL-----GT--DSVEFQGESFAM 627 (858)
Q Consensus 555 ~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~-----~~--~~~~~~~~~y~~ 627 (858)
+++.+|.... ...+..||||.+||..|.++.... .. ......++.|..
T Consensus 310 ----------------------~~~~~~~~~~---~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~ 364 (435)
T d1v6ca_ 310 ----------------------SNSALPGLQN---PFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEY 364 (435)
T ss_dssp ----------------------CCSSSCSCCC---CEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEE
T ss_pred ----------------------ccCCCCCcCC---ccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeE
Confidence 2333333211 012468999999999887553210 00 000123457999
Q ss_pred ecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccC
Q 003005 628 MSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASL 707 (858)
Q Consensus 628 ~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~ 707 (858)
|||||||||||||++|||+|+||+|+|+|||++||+||+++... +++++||+|+||+.+|+
T Consensus 365 ~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~~-------------------~~~~~~G~G~vn~~~A~ 425 (435)
T d1v6ca_ 365 YNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA-------------------GRDNQTGYGMINAVAAK 425 (435)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSS-------------------SCBTTTBTCBCCHHHHH
T ss_pred EccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCCC-------------------CCCCCcccceecHHHHH
Confidence 99999999999999999999999999999999999999977433 34678999999999996
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=2.7e-48 Score=414.80 Aligned_cols=265 Identities=32% Similarity=0.434 Sum_probs=212.3
Q ss_pred CcccCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeec
Q 003005 166 PQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHF 245 (858)
Q Consensus 166 ~~~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~ 245 (858)
.+.++++. +|.. +++|+||+|||||||||++||+|.++ ++..++|
T Consensus 15 l~~i~~~~-aw~~----~~~G~gv~VaviDsGi~~~h~~l~~~------------------------------~~~~~~~ 59 (280)
T d1dbia_ 15 PQNTYTDY-AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK------------------------------VIKGYDF 59 (280)
T ss_dssp TGGGTHHH-HTTT----CCCCTTCEEEEEESCCCTTSTTTTTT------------------------------EEEEEET
T ss_pred hhhCCHHH-HHhc----cCCCCCeEEEEEccCcCCCChhhcCC------------------------------eeecccc
Confidence 34455544 7776 78999999999999999999999964 2333343
Q ss_pred chhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHH
Q 003005 246 AASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAA 325 (858)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~a 325 (858)
... ...+.|.++|||||||+|+|..... ..+.||||+|+|+.+|+++....+...++++|
T Consensus 60 ~~~------------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a 119 (280)
T d1dbia_ 60 VDN------------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADA 119 (280)
T ss_dssp TTT------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHH
T ss_pred cCC------------CCccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHHH
Confidence 321 2445688999999999999875322 34679999999999999987666889999999
Q ss_pred HHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceee
Q 003005 326 IDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYT 405 (858)
Q Consensus 326 i~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~ 405 (858)
|+|++++|++|||||||.... ......++..+.++|+++|+||||+|......|+..+++|+|||++.+
T Consensus 120 i~~a~~~g~~iin~S~g~~~~-------~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~---- 188 (280)
T d1dbia_ 120 IIYAADSGAEVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY---- 188 (280)
T ss_dssp HHHHHHTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT----
T ss_pred HHHHHHcCCcEeecccccccc-------chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC----
Confidence 999999999999999997542 346677888999999999999999998888888999999999986422
Q ss_pred eEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHH
Q 003005 406 NSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIK 485 (858)
Q Consensus 406 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~ 485 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccccc
Q 003005 486 QAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKA 565 (858)
Q Consensus 486 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 565 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHH
Q 003005 566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645 (858)
Q Consensus 566 ~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 645 (858)
+.++.||++||.. |++|||.+|++.. .+..|..++|||||||+|||++|||
T Consensus 189 ------~~~a~~S~~g~~~-------------d~~apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~All 239 (280)
T d1dbia_ 189 ------DRLASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAALL 239 (280)
T ss_dssp ------SCBCTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHH
T ss_pred ------CCcCCcCCCCCcc-------------cccCCccceeccc----------cCcceeccCCccccchHHHHHHHHH
Confidence 2478899999876 8999999999988 4568999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 646 KQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 646 ~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|. .+++.|||++|++||+++... +..||+|+||+.+||+
T Consensus 240 ~~~--~~t~~~v~~~L~~tA~~~~~~---------------------~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 240 ASQ--GRNNIEIRQAIEQTADKISGT---------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHT--TCCHHHHHHHHHHTSBCCTTB---------------------TTTBSSEECCHHHHHT
T ss_pred hCC--CcCHHHHHHHHHHhCcCCCCC---------------------CCcCCCCeEcHHHHcC
Confidence 995 458999999999999876432 3479999999999985
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.8e-47 Score=408.79 Aligned_cols=262 Identities=31% Similarity=0.472 Sum_probs=219.8
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecch
Q 003005 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247 (858)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~ 247 (858)
.+++++ +|+. .+|+||+|||||||||++||+|.++ ++..++|.+
T Consensus 17 ~i~a~~-aw~~-----~tG~Gv~VaViDsGi~~~H~~~~~~------------------------------~~~~~~~~~ 60 (279)
T d1thma_ 17 KIQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK------------------------------VVGGWDFVD 60 (279)
T ss_dssp HTTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTT------------------------------EEEEEETTT
T ss_pred hCCHHH-HHhc-----cCCCCcEEEEEcCCCCCCChhhcCC------------------------------eeccccccc
Confidence 345544 7875 3899999999999999999999864 334444443
Q ss_pred hhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHH
Q 003005 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327 (858)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~ 327 (858)
+ ...+.|..+|||||||+|++..... ..+.||||+|+|+.+|++.....+...+++++|+
T Consensus 61 ~------------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~ 120 (279)
T d1thma_ 61 N------------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGIT 120 (279)
T ss_dssp T------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHH
T ss_pred c------------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHH
Confidence 2 2456788999999999999875322 3467999999999999998756688899999999
Q ss_pred HHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeE
Q 003005 328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (858)
Q Consensus 328 ~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~ 407 (858)
++.+.+++|+|+|||.... ...+..++..+.++|+++|+|+||+|......++..+++|+|||++.+
T Consensus 121 ~~~~~~~~i~n~S~G~~~~-------~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~------ 187 (279)
T d1thma_ 121 YAADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------ 187 (279)
T ss_dssp HHHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT------
T ss_pred HHhhcCCceeccccCcccc-------chhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC------
Confidence 9999999999999997532 356778889999999999999999999888888999999999986422
Q ss_pred EEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHH
Q 003005 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (858)
Q Consensus 408 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~ 487 (858)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccccccc
Q 003005 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (858)
Q Consensus 488 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 567 (858)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH
Q 003005 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ 647 (858)
Q Consensus 568 ~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q 647 (858)
+.++.||++|++. ||+|||.+|+++. +++.|..++|||||||+|||++|||+|
T Consensus 188 ----~~~~~~S~~G~~~-------------di~Apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~ALl~~ 240 (279)
T d1thma_ 188 ----DNKSSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSMATPHVAGVAGLLAS 240 (279)
T ss_dssp ----SCBCTTCCCCTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHT
T ss_pred ----CCCccccCCCceE-------------EEeeeeecccccc----------CcccccccCCcchhhHHHHHHHHHHhc
Confidence 2478899999886 8999999999998 566899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 648 KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 648 ~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
++| ++.+||++|++||+++... +..||+|+||+.+||+
T Consensus 241 ~~~--s~~~i~~~L~~tA~~~~g~---------------------~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 241 QGR--SASNIRAAIENTADKISGT---------------------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TTC--CHHHHHHHHHHTCBCCTTB---------------------TTTBSSEECCHHHHHH
T ss_pred CCc--CHHHHHHHHHhhCccCCCC---------------------CCcceeeeEcHHHhhC
Confidence 766 7899999999999876432 3479999999999974
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=3.3e-47 Score=405.64 Aligned_cols=260 Identities=31% Similarity=0.493 Sum_probs=213.4
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +++|+||+|||||||||++||+|+.. ..++|..+
T Consensus 11 i~~~~-~~~~----g~tG~gv~VaViDtGv~~~Hp~l~~~--------------------------------~~~~~~~~ 53 (274)
T d1r0re_ 11 IKADK-VQAQ----GFKGANVKVAVLDTGIQASHPDLNVV--------------------------------GGASFVAG 53 (274)
T ss_dssp TTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCCEE--------------------------------EEEECSTT
T ss_pred cChHH-HHHc----CCCCCCeEEEEECCCCCCCChhhccc--------------------------------CCccccCC
Confidence 44444 6776 79999999999999999999999631 22333321
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
...+.|.++|||||||||++.... ..+.|+||+|+|+.+++++....+..+++++++++
T Consensus 54 ------------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~ 112 (274)
T d1r0re_ 54 ------------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW 112 (274)
T ss_dssp ------------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred ------------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 234567889999999999987532 23579999999999999987555788999999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC----CCCCCCCCceEEEeecccCcee
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP----KSMSSFSPWIFTVGAASHDRIY 404 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~ 404 (858)
+.+++++|+|+|||.... .........++.++++++|+||||++... ..+|+..+++|+|||++.+
T Consensus 113 a~~~~~~i~n~S~~~~~~-------~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--- 182 (274)
T d1r0re_ 113 ATTNGMDVINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--- 182 (274)
T ss_dssp HHHTTCSEEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---
T ss_pred HHhcCCceeccccccccc-------hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC---
Confidence 999999999999997543 24566777889999999999999998753 3446778899999986422
Q ss_pred eeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchH
Q 003005 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (858)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~ 484 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccc
Q 003005 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (858)
Q Consensus 485 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 564 (858)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHH
Q 003005 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (858)
Q Consensus 565 ~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 644 (858)
+.++.||++||.+ ||+|||++|+++. ..+.|..++|||||||+|||++||
T Consensus 183 -------~~~~~~s~~g~~~-------------di~APG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~~Al 232 (274)
T d1r0re_ 183 -------SNRASFSSVGAEL-------------EVMAPGAGVYSTY----------PTNTYATLNGTSMASPHVAGAAAL 232 (274)
T ss_dssp -------SCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHH
T ss_pred -------CCcccccCCCCCE-------------EEEecCCCccccc----------CCCCeEeecCCchhHHHHHHHHHH
Confidence 2367899999754 9999999999998 456899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 645 IKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 645 l~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
|+|++|+|+++|||++|++||+++.. +..||+|+||+.+|++
T Consensus 233 l~~~~p~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 233 ILSKHPNLSASQVRNRLSSTATYLGS----------------------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHSTTCCHHHHHHHHHHTCBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred HHHHCCCCCHHHHHHHHHhhCccCCC----------------------CCceEcCeecHHHhcC
Confidence 99999999999999999999987532 3479999999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=4.5e-47 Score=403.31 Aligned_cols=259 Identities=32% Similarity=0.487 Sum_probs=217.3
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +++|+||+||||||||| +||+|.... .++|...
T Consensus 11 i~~~~-aw~~----g~tG~gv~V~ViDsGv~-~h~~l~~~~--------------------------------~~~~~~~ 52 (269)
T d1gcia_ 11 VQAPA-AHNR----GLTGSGVKVAVLDTGIS-THPDLNIRG--------------------------------GASFVPG 52 (269)
T ss_dssp TTHHH-HHHT----TCSCTTCEEEEEESCCC-CCTTCCEEE--------------------------------EEECSTT
T ss_pred hCcHH-HHhC----CCCCCCeEEEEECCCCC-CCcccCccc--------------------------------cccccCC
Confidence 45544 7876 79999999999999998 899996421 1222221
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
...+.|.++|||||||||++..+. ....|+||+|+|+.+|++.....+....+.++++|
T Consensus 53 ------------~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~ 111 (269)
T d1gcia_ 53 ------------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEW 111 (269)
T ss_dssp ------------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHH
T ss_pred ------------CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHH
Confidence 234567889999999999987532 23569999999999999988666888899999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEE
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI 408 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~ 408 (858)
+..+++++||+|||.... ......++..+.++|+++|+||||+|.....+|+..|++|+||+++.+
T Consensus 112 ~~~~~~~~in~s~g~~~~-------~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------- 177 (269)
T d1gcia_ 112 AGNNGMHVANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------- 177 (269)
T ss_dssp HHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------
T ss_pred HHhccccccccccccccc-------cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-------
Confidence 999999999999997532 245677888999999999999999999888889999999999986422
Q ss_pred EeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHH
Q 003005 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (858)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 488 (858)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccC
Q 003005 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (858)
Q Consensus 489 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 568 (858)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHh
Q 003005 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648 (858)
Q Consensus 569 ~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 648 (858)
+.++.||++||.. ||+|||.++.++. .++.|..++|||||||+|||++|||+|+
T Consensus 178 ---~~~~~~S~~G~~~-------------di~Apg~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~ 231 (269)
T d1gcia_ 178 ---NNRASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQK 231 (269)
T ss_dssp ---SCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcccccCCCCCc-------------eEEEeeecceecc----------CCCceEecCCcchHHHHHHHHHHHHHHH
Confidence 2367899999875 8999999999988 5568999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 649 ~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|+|+++|||++|++||+++.. +..||+|+||+++|++
T Consensus 232 ~p~lt~~~i~~~L~~tA~~~g~----------------------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 232 NPSWSNVQIRNHLKNTATSLGS----------------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp CTTCCHHHHHHHHHHTSBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred CCCCCHHHHHHHHHhhCccCCC----------------------CCCcccCeEcHHHhcC
Confidence 9999999999999999987632 2368999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=7.8e-47 Score=404.17 Aligned_cols=262 Identities=29% Similarity=0.445 Sum_probs=214.4
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +++|+||+|||||||||++||+|+.... +++...
T Consensus 11 i~a~~-aw~~----g~tG~Gv~IaviDtGv~~~Hp~l~~~~~--------------------------------~~~~~~ 53 (281)
T d1to2e_ 11 IKAPA-LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVAGG--------------------------------ASMVPS 53 (281)
T ss_dssp TTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCCEEEE--------------------------------EECCTT
T ss_pred hCcHH-HHHC----CCCCCCeEEEEECCCCCCCChhhhhcCC--------------------------------ccccCC
Confidence 45444 7876 7999999999999999999999974311 122111
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
+.....+..+|||||||||+|.... ....||||+|+|+.+|++..+..+...+++++|+|
T Consensus 54 -----------~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~ 113 (281)
T d1to2e_ 54 -----------ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEW 113 (281)
T ss_dssp -----------CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred -----------CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 1112234578999999999987432 23579999999999999987555788899999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC----CCCCCCCCceEEEeecccCcee
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP----KSMSSFSPWIFTVGAASHDRIY 404 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~ 404 (858)
+++.+++|||+|||... ....+..+++.+.++|+++|+||||++... ...|+..+++|+|||++.+
T Consensus 114 a~~~~~~v~n~S~g~~~-------~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--- 183 (281)
T d1to2e_ 114 AIANNMDVINMSLGGPS-------GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--- 183 (281)
T ss_dssp HHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---
T ss_pred HHhccccccccccCCCc-------chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC---
Confidence 99999999999999743 345788889999999999999999998753 3356778899999986422
Q ss_pred eeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchH
Q 003005 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (858)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~ 484 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccc
Q 003005 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (858)
Q Consensus 485 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 564 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHH
Q 003005 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (858)
Q Consensus 565 ~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 644 (858)
+.++.||++||.. |++|||.+|+++. .++.|..++|||||||+|||++||
T Consensus 184 -------~~~~~~S~~G~~~-------------d~~apG~~i~s~~----------~~~~~~~~~GTS~Aap~vaG~~Al 233 (281)
T d1to2e_ 184 -------NQRASFSSVGPEL-------------DVMAPGVSIQSTL----------PGNKYGAYNGTSMASPHVAGAAAL 233 (281)
T ss_dssp -------SCBCTTCCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECBHHHHHHHHHHHHHH
T ss_pred -------CCCCcccCCCCCc-------------cccCCCCCceeec----------CCCeeEcccCcchhHHHHHHHHHH
Confidence 2367899999876 8999999999998 466899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 645 IKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 645 l~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
|+|++|+|+++|||++|++||+++.. +..||+|+||+.+|++.
T Consensus 234 l~~~~p~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 234 ILSKHPNWTNTQVRSSLENTTTKLGD----------------------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp HHHHSTTCCHHHHHHHHHTTCBCCSC----------------------HHHHTTCBCCHHHHTSS
T ss_pred HHHHCCCCCHHHHHHHHHhhCccCCC----------------------CCCcccCcccHHHHHhh
Confidence 99999999999999999999987632 23689999999999974
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=3.2e-42 Score=373.38 Aligned_cols=289 Identities=29% Similarity=0.423 Sum_probs=216.1
Q ss_pred CCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhh
Q 003005 170 GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA 249 (858)
Q Consensus 170 ~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~ 249 (858)
+++. +|.. +++|+||+|||||||||++||+|.++.. ..++|....
T Consensus 14 ~~~~-aw~~----~~~G~gv~V~ViDsGv~~~Hp~~~~~~~------------------------------~~~~~~~~~ 58 (309)
T d2ixta1 14 YNND-TLTS----TTGGSGINIAVLDTGVNTSHPDLVNNVE------------------------------QCKDFTGAT 58 (309)
T ss_dssp HTCT-TCCC----CCCCTTCEEEEEESCCCTTCTTTTTTEE------------------------------EEEESSSSS
T ss_pred CChh-hhcc----CCCCCCeEEEEEccCCCCCChhHhcccc------------------------------ccccccCCC
Confidence 3444 6765 7899999999999999999999997422 223333210
Q ss_pred hhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHH
Q 003005 250 ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA 329 (858)
Q Consensus 250 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a 329 (858)
........|..+|||||||||+|+... ....+.||||+|+|+.++++.....+..++++.+++++
T Consensus 59 --------~~~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a 123 (309)
T d2ixta1 59 --------TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (309)
T ss_dssp --------SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred --------CCCCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCccccccccccccc
Confidence 011234457889999999999987422 12346799999999999999876668888999999998
Q ss_pred HHC-----CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC--CCCCCCCceEEEeecccCc
Q 003005 330 AQD-----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDR 402 (858)
Q Consensus 330 ~~~-----g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~ 402 (858)
++. ...|+|+||+... .......++..+.++|+++|+||||++.... ..|+..+++|+|++.+...
T Consensus 124 ~~~~~~~~~~~v~~~s~~~~~-------~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~ 196 (309)
T d2ixta1 124 ADQATATGTKTIISMSLGSSA-------NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ 196 (309)
T ss_dssp HHHHHHHTCCEEEEECCCBSS-------CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE
T ss_pred ccccccccccccccccccccc-------cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccc
Confidence 875 3468999998743 2346677888899999999999999987643 3566778999998764321
Q ss_pred eeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcc
Q 003005 403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS 482 (858)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~ 482 (858)
......
T Consensus 197 ~~~~~~-------------------------------------------------------------------------- 202 (309)
T d2ixta1 197 QNGTYR-------------------------------------------------------------------------- 202 (309)
T ss_dssp ETTEEE--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 100000
Q ss_pred hHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecc
Q 003005 483 TIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG 562 (858)
Q Consensus 483 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 562 (858)
T Consensus 203 -------------------------------------------------------------------------------- 202 (309)
T d2ixta1 203 -------------------------------------------------------------------------------- 202 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHH
Q 003005 563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642 (858)
Q Consensus 563 ~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 642 (858)
.........++++|+... ...||||+|||.+|+++. .+..|..++|||||||+|||++
T Consensus 203 -----~~~~~~~~~~~~~~~~~~-------~~~~vdi~apG~~~~s~~----------~~~~~~~~sGTS~AaP~VaG~~ 260 (309)
T d2ixta1 203 -----VADYSSRGYISTAGDYVI-------QEGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLA 260 (309)
T ss_dssp -----ECTTSCCCCTTTTTSSSC-------CTTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHH
T ss_pred -----cccccccccccccccccc-------CCCcceeecCCCceeeec----------CCCcceeecCccchhHHHHHHH
Confidence 000012445677777665 468999999999999998 4568999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccc
Q 003005 643 ALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNA 703 (858)
Q Consensus 643 ALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~ 703 (858)
|||+|++|+|+++|||++|++||++++..+.. ......++.+|+|++|+
T Consensus 261 Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~------------g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 261 AKIWAENPSLSNTQLRSNLQERAKSVDIKGGY------------GAAIGDDYASGFGFARV 309 (309)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST------------TCCSSSBTTTBTCBCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc------------CCccCCCcccCCCEecC
Confidence 99999999999999999999999987654321 12345567889999885
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2e-41 Score=361.48 Aligned_cols=225 Identities=31% Similarity=0.477 Sum_probs=185.6
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
..+|+||+|||||||||++||+|.++.. ....+ ..
T Consensus 27 ~~tG~Gv~VaViDsGid~~Hpdf~g~~~------------------------------~~~~~---------------~~ 61 (279)
T d2pwaa1 27 ESAGQGSCVYVIDTGIEASHPEFEGRAQ------------------------------MVKTY---------------YY 61 (279)
T ss_dssp TTTTTTEEEEEEESCCCTTCGGGTTCEE------------------------------EEEES---------------SS
T ss_pred CCCCCCeEEEEECcCCCCCChhhcCCce------------------------------eccCC---------------CC
Confidence 3699999999999999999999997532 00110 12
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC-------CCC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-------GVD 335 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~-------g~~ 335 (858)
.+.|.++|||||||||+|+. .|+||+|+|+.+|++........+++..+++++... ++.
T Consensus 62 ~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (279)
T d2pwaa1 62 SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGV 127 (279)
T ss_dssp CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred CcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheeccccccccccccc
Confidence 33577899999999999863 499999999999999876667888999999998864 345
Q ss_pred EEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC-CCCCCCceEEEeecccCceeeeEEEeCCce
Q 003005 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (858)
Q Consensus 336 VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 414 (858)
|+|+|||.. ..+.+..++..+.++|+++|+||||++.+... .|+..|++|+|||++.+
T Consensus 128 i~n~s~g~~--------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~------------- 186 (279)
T d2pwaa1 128 VASLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY------------- 186 (279)
T ss_dssp EEEECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------
T ss_pred ceeccCCCc--------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec-------------
Confidence 999999964 23578888899999999999999999876433 56778999999986422
Q ss_pred EEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhC
Q 003005 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (858)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~ 494 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcc
Q 003005 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (858)
Q Consensus 495 Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 574 (858)
+.+
T Consensus 187 -----------------------------------------------------------------------------g~~ 189 (279)
T d2pwaa1 187 -----------------------------------------------------------------------------DRR 189 (279)
T ss_dssp -----------------------------------------------------------------------------SBB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 247
Q ss_pred ccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCH
Q 003005 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP 654 (858)
Q Consensus 575 a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp 654 (858)
+.||++||.. ||+|||.+|+++. .++.|..++|||||||+|||++|||+|++|.+++
T Consensus 190 ~~~S~~G~~~-------------dv~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~ 246 (279)
T d2pwaa1 190 SSFSNYGSVL-------------DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAA 246 (279)
T ss_dssp CTTCCBSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred ccccCCCCcc-------------ccccccccccccc----------cCCcccCCCcchhHHHHHHHHHHHHHHhCCCChH
Confidence 8899999876 8999999999998 5668999999999999999999999999999998
Q ss_pred HHHHHHHHcccccc
Q 003005 655 SAIASALSTSATLY 668 (858)
Q Consensus 655 ~~ik~~L~~TA~~~ 668 (858)
+++|. |++||++.
T Consensus 247 ~~~~~-ll~ta~~~ 259 (279)
T d2pwaa1 247 SACRY-IADTANKG 259 (279)
T ss_dssp THHHH-HHHHSEES
T ss_pred HHHHH-HHHhCcCC
Confidence 87775 67788753
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=5e-40 Score=357.38 Aligned_cols=289 Identities=27% Similarity=0.382 Sum_probs=214.7
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
|++|+||+|||||||||++||+|..... | .+++...+.+.. ..
T Consensus 18 G~tG~Gv~VaIiDsGi~~~h~~~~~~~~---------~---------------~~~~~~~~~~~~-------------~~ 60 (318)
T d1wmda2 18 GLYGQGQIVAVADTGLDTGRNDSSMHEA---------F---------------RGKITALYALGR-------------TN 60 (318)
T ss_dssp CCSCTTCEEEEEESCCTTSCSSTTSCTT---------T---------------TTCEEEEEETTT-------------TT
T ss_pred CccccCeEEEEEcCCcCCCCcccccCcc---------c---------------CCcEEeecCCCC-------------CC
Confidence 7999999999999999999999986422 1 123333333322 13
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC--CCHHHHHHHHHHHHHCCCCEEEEc
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLS 340 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~VIN~S 340 (858)
.+.|..+|||||||||+|+.. ...||||+|+|+.+|++..... .....+..+++++...+++|+|+|
T Consensus 61 ~~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 129 (318)
T d1wmda2 61 NANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNS 129 (318)
T ss_dssp CCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecc
Confidence 456788999999999998742 2369999999999999976432 334457889999999999999999
Q ss_pred cCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC--CCCCCceEEEeecccCceeeeEEEeCCceEEEe
Q 003005 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTISG 418 (858)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~ 418 (858)
||...... .......+.+.+.++++++|+||||.+.+.... ++..+++|++.+........
T Consensus 130 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------- 192 (318)
T d1wmda2 130 WGAAVNGA----YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF------------- 192 (318)
T ss_dssp CCBCCTTC----CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-------------
T ss_pred cccccccc----cchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-------------
Confidence 99764432 334566667778899999999999999876544 34567777777654221100
Q ss_pred eecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeE
Q 003005 419 VGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAG 498 (858)
Q Consensus 419 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g 498 (858)
T Consensus 193 -------------------------------------------------------------------------------- 192 (318)
T d1wmda2 193 -------------------------------------------------------------------------------- 192 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccccc
Q 003005 499 IVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYS 578 (858)
Q Consensus 499 ~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 578 (858)
.........+..||
T Consensus 193 ------------------------------------------------------------------~~~~~~~~~~~~~s 206 (318)
T d1wmda2 193 ------------------------------------------------------------------GSYADNINHVAQFS 206 (318)
T ss_dssp ------------------------------------------------------------------CGGGSCTTSBCTTS
T ss_pred ------------------------------------------------------------------cccccccccccccc
Confidence 00001113467789
Q ss_pred ccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCc--cccCccceeecccCchhHHHHHHHHHHHHhCC-----C
Q 003005 579 ARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSV--EFQGESFAMMSGTSMAAPHIAGLAALIKQKFP-----S 651 (858)
Q Consensus 579 S~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-----~ 651 (858)
++||... ...|||++|||.+|+++......... ......|..++|||||||||||++|||+|++| .
T Consensus 207 ~~G~~~~-------~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~ 279 (318)
T d1wmda2 207 SRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGIT 279 (318)
T ss_dssp CCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred ccCCCcC-------CCcccceeecCceEEeccccccccCccccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCC
Confidence 9999876 47899999999999998865543221 11234688899999999999999999999754 5
Q ss_pred CCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 652 FSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 652 lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
++|.+||++|++||+++... .++..||||+||+.+||+
T Consensus 280 ~~~~~i~~~l~~tA~~~~~~-------------------~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 280 PKPSLLKAALIAGAADIGLG-------------------YPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp CCHHHHHHHHHHHCBCCSSC-------------------SSCTTTTTCBCCHHHHHT
T ss_pred CCHHHHHHHHHhhCccCCCC-------------------CCCCCeeeceecHHHHhC
Confidence 78999999999999876432 335689999999999985
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-38 Score=346.91 Aligned_cols=293 Identities=20% Similarity=0.213 Sum_probs=202.7
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +++|+||+|||||||||++||+|.++... -+.++|.+.
T Consensus 33 in~~~-aw~~----g~~G~gv~VaViDtGid~~Hp~l~~~~~~----------------------------~~~~~~~~~ 79 (339)
T d2id4a2 33 INVLD-LWYN----NITGAGVVAAIVDDGLDYENEDLKDNFCA----------------------------EGSWDFNDN 79 (339)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTBCG----------------------------GGCEETTTT
T ss_pred cCHHH-HHhc----CCCCCCcEEEEECcCcCCCChHHhcCccc----------------------------ccccccccC
Confidence 34444 7776 79999999999999999999999986430 011222221
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
........+..+|||||||+|+|..+.. ....||||+|+|+.++++.. .....++..++.+
T Consensus 80 ---------~~~~~~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~--~~~~~~~~~~~~~ 140 (339)
T d2id4a2 80 ---------TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIY 140 (339)
T ss_dssp ---------BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTT
T ss_pred ---------CCccCCCcccccccceeeeccccccccc--------ccccccccccccceEEEeec--cccchHHHHHHHH
Confidence 0112334567899999999999875332 23579999999999998764 4667778888887
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCC-----HHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCC--CCCceEEEeecc
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFN-----PIDMALLSAAKAGIFVVQAAGNTGPSPKS--MSS--FSPWIFTVGAAS 399 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~-----~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~--~~p~vitVgA~~ 399 (858)
+++. .+|+|+|||............. ....++..+..+|+++|+||||++..... +++ ..+.+++|++++
T Consensus 141 ~~~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (339)
T d2id4a2 141 GLDV-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID 219 (339)
T ss_dssp TTTT-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC
T ss_pred HHhh-CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc
Confidence 7665 5899999996533211111111 23344556667999999999998764322 111 123344444322
Q ss_pred cCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEecccccc
Q 003005 400 HDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVL 479 (858)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~ 479 (858)
.
T Consensus 220 ~------------------------------------------------------------------------------- 220 (339)
T d2id4a2 220 H------------------------------------------------------------------------------- 220 (339)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEE
Q 003005 480 GLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACI 559 (858)
Q Consensus 480 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 559 (858)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHH
Q 003005 560 LGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIA 639 (858)
Q Consensus 560 ~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VA 639 (858)
.+..+.||++|+.. ...++..+||..+.++.. .+..|..++||||||||||
T Consensus 221 -----------~g~~~~~s~~~~~~---------~~~~~~~~~g~~~~s~~~---------~~~~~~~~sGTS~AtP~va 271 (339)
T d2id4a2 221 -----------KDLHPPYSEGCSAV---------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAA 271 (339)
T ss_dssp -----------TSCCCTTCCCCTTE---------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHH
T ss_pred -----------cccccccccccCcc---------ceeeeeeccccccceecc---------CCCccccCCCCcchHHHHH
Confidence 12356667777654 355688999999988763 3557899999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 003005 640 GLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (858)
Q Consensus 640 G~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 709 (858)
|++|||+|++|+|++.|||.+|++||++++......... .......+..||||+||+.+||+.
T Consensus 272 G~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~-------~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 272 GVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRD-------SAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEE-------CSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccc-------cCCCCCcCCCccchhhCHHHHHHH
Confidence 999999999999999999999999999875433211000 012233456799999999999964
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-38 Score=345.70 Aligned_cols=179 Identities=22% Similarity=0.272 Sum_probs=115.4
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++++. +|.. +++|+||+|||||||||++||+|.++.. ..+.|...
T Consensus 24 in~~~-aw~~----g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------------------------~~~~~~~~ 68 (334)
T d1p8ja2 24 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD------------------------------PGASFDVN 68 (334)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC------------------------------GGGCEETT
T ss_pred CCHHH-HHhc----CCCCCCeEEEEEccCCCCCChhHhhccc------------------------------cCCCcccc
Confidence 33333 7776 7999999999999999999999997543 00011000
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
. ......+.....|..+|||||||||+|...++ ....|+||+++++.+|++.. ...+.+.++.+
T Consensus 69 ~----~~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~----~~~~~~~~~~~ 132 (334)
T d1p8ja2 69 D----QDPDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDG----EVTDAVEARSL 132 (334)
T ss_dssp T----TBSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSS----CCCHHHHHHHH
T ss_pred C----CCCccccccccccCccchhhhhhhhhhccccc--------cccccccccccccchhhccc----cccchHHHHHH
Confidence 0 00011122334578899999999999876432 23469999999999998754 22356667777
Q ss_pred HHH-CCCCEEEEccCCCCCCCCCCc-----cCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC----CCCCceEEEeec
Q 003005 329 AAQ-DGVDIISLSITPNRRPPGIAT-----FFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS----SFSPWIFTVGAA 398 (858)
Q Consensus 329 a~~-~g~~VIN~S~G~~~~~~~~~~-----~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVgA~ 398 (858)
+++ ++++++|||||.......... ....+..++..+..+|+++|+||||++....... ...+.+++|+++
T Consensus 133 ~~~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (334)
T d1p8ja2 133 GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA 212 (334)
T ss_dssp TSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE
T ss_pred HhhhcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccc
Confidence 765 689999999997543211111 1122334455667899999999999876543221 223455555554
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=1.2e-30 Score=287.37 Aligned_cols=164 Identities=24% Similarity=0.318 Sum_probs=110.5
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||||||++||||.+... . +.......
T Consensus 20 G~tG~Gv~VaViDtGvd~~H~dl~~~~~-----------~--------------------------------~~~~~~~~ 56 (357)
T d1t1ga_ 20 GLDGQGQCIAIIALGGGYDETSLAQYFA-----------S--------------------------------LGVSAPQV 56 (357)
T ss_dssp TCCCTTCEEEEEESSCCCCHHHHHHHHH-----------H--------------------------------TTCCCCCE
T ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHHHh-----------h--------------------------------cCCCCCCC
Confidence 7899999999999999999999986321 0 00000011
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH---HCCCCEEEE
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA---QDGVDIISL 339 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~---~~g~~VIN~ 339 (858)
.+.+.++|+|||+|++++..... ......+.||||+|+|+.+++... ...++.++++++ +++++||||
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~----~~d~~~~~GvAp~A~i~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~Vin~ 127 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEV----ELDIEVAGALAPGAKIAVYFAPNT-----DAGFLNAITTAVHDPTHKPSIVSI 127 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHH----HHHHHHHHHHSTTSEEEEEECCSS-----HHHHHHHHHHHHHCTTTCCSEEEE
T ss_pred ceeCCCCCCCCCCCccccccccc----cCCcccceeecccCeEEEEecccC-----CCchHHHHHHHHHhhhcCCeEEec
Confidence 22356789999998877543110 001123579999999999998765 234555566655 458999999
Q ss_pred ccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC--------CCCCCCceEEEeecc
Q 003005 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--------MSSFSPWIFTVGAAS 399 (858)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVgA~~ 399 (858)
|||....... ......++.+++.+..+|+++|+|+||+|..... .++..+++++|++..
T Consensus 128 S~G~~~~~~~-~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 128 SWGGPEDSWA-PASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp CCCEEGGGSC-HHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred ccccCcCccc-cchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 9997432111 1223456777788888999999999999864322 234567889888764
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=2.3e-28 Score=270.45 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=96.3
Q ss_pred CCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCCC
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DGVDIISLSITPN 344 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~~VIN~S~G~~ 344 (858)
+..+||||+++++.+..+. ..+.||||+|+|+.++++.+.......+++.+|+|+++ ++++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 4568999999998865321 23579999999999999987555777899999999986 5799999999974
Q ss_pred CCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-------------CCCCCCCceEEEeecc
Q 003005 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-------------SMSSFSPWIFTVGAAS 399 (858)
Q Consensus 345 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVgA~~ 399 (858)
..........+.++++++++..+|++||+||||+|.... ..|+..+++++|+++.
T Consensus 137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 321111224466788889999999999999999986432 2345678999999865
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=1.9e-06 Score=68.75 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=40.1
Q ss_pred CCceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccc
Q 003005 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (858)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~ 160 (858)
..+.++.+.|. .+|||+++++++.++.|+++|+|.+||+|..++.
T Consensus 26 ~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 26 QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 34678899997 7999999999999999999999999999987653
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.88 E-value=2.2e-05 Score=62.56 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=31.4
Q ss_pred eEEEEEc-ceeeEEEEEcCHHHHHHHhcCCC--eeEEEeCc
Q 003005 119 LKLYSYH-YLINGFSVFVTPQQAEKLSRRRE--VANVVSDF 156 (858)
Q Consensus 119 ~~~~~~~-~~~ng~~v~~~~~~l~~L~~~p~--V~~v~~~~ 156 (858)
.+.+.|. ..||||+++++++.++.|+++|+ |.+||++.
T Consensus 31 ~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 31 TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred ceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 3444554 47999999999999999999665 99999985
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.02 E-value=0.015 Score=48.99 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=54.9
Q ss_pred CCeEEEeecCcceEEEEEEEEcCC-C-ceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCC-CeEEEEEEE
Q 003005 756 LPSITIARLNQSRTVQRTLTNIAG-N-ETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGT-AASFGRIGL 832 (858)
Q Consensus 756 ~~si~~~~~~~~~~~~~tv~n~~~-~-~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~-~~~~G~i~~ 832 (858)
.|++.+. -....+++.+|+|.++ . ..-.+....|.|=+ +.+..+.|+||+++++++++++|.... ..|.=.+..
T Consensus 8 ~p~~~v~-pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~--v~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~a 84 (103)
T d1w8oa1 8 IPDVALE-PGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQ--VQGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGATL 84 (103)
T ss_dssp CCCEEEC-TTCEEEEEEEEECCSSSCBSSCEEEEECCTTSE--EEEEECCBCTTCEEEEEEEEECCTTCCCEEEEEEEEE
T ss_pred CcceeeC-CCCeEEEEEEEEeCCCCceeeeeEEEcCCCCcc--ccCcceeeCCCCcEEEEEEEECCCCCCCceEEEEEEE
Confidence 3555542 2345678889999998 3 33456666788744 456677899999999999999988632 233223444
Q ss_pred EeCCccEEEEeEEE
Q 003005 833 FGNQGHIVNIPLSV 846 (858)
Q Consensus 833 ~~~~~~~l~iP~~~ 846 (858)
+.+ +...+..|.+
T Consensus 85 ~~~-~~~~s~t~tv 97 (103)
T d1w8oa1 85 RTS-AGNASTTFTV 97 (103)
T ss_dssp EET-TEEEEEEEEE
T ss_pred EeC-CcceEEEEEE
Confidence 443 3333444443
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.08 Score=49.34 Aligned_cols=39 Identities=31% Similarity=0.523 Sum_probs=34.8
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
.+++|||+|+.+ |.+.+.+|+.+|+..||.|+|+|.+..
T Consensus 59 ~~v~GkI~l~r~------G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 59 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred cccCceEEEEeC------CCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 468999999998 677889999999999999999998754
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.15 Score=48.93 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=34.1
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 505 (858)
-+++|||+|+.+ |...+.+|+.+|+..||+|+|+|++.
T Consensus 77 i~~~gkIvl~ry------G~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 77 INCSGKIVIARY------GKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CcccceEEEEeC------CCCchhHHHHHHHHcCceEEEEecCh
Confidence 468999999998 56778999999999999999999875
|